Citrus Sinensis ID: 040136
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 681 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FMF6 | 730 | Pentatricopeptide repeat- | yes | no | 0.922 | 0.860 | 0.588 | 0.0 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.875 | 0.781 | 0.300 | 1e-81 | |
| O49436 | 660 | Pentatricopeptide repeat- | no | no | 0.816 | 0.842 | 0.301 | 1e-77 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.726 | 0.783 | 0.328 | 1e-76 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.672 | 0.745 | 0.332 | 5e-75 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.719 | 0.777 | 0.325 | 6e-75 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.861 | 0.778 | 0.290 | 9e-75 | |
| Q9M302 | 659 | Pentatricopeptide repeat- | no | no | 0.857 | 0.886 | 0.290 | 4e-74 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.719 | 0.779 | 0.321 | 1e-73 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.726 | 0.785 | 0.318 | 1e-73 |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/675 (58%), Positives = 498/675 (73%), Gaps = 47/675 (6%)
Query: 54 SESENEWERLLKPFDLNELRKSLHKITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHT 113
++S NEWE+LLKPFDL+ LR S HKITPFQL KLL LPL+V TSME+F+W GSQ GY H+
Sbjct: 51 TDSANEWEKLLKPFDLDSLRNSFHKITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHS 110
Query: 114 FDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLL 173
FDVY VLI KLGAN EFK ID +L+QMK+EGI+ +ESLFI IM+ Y + G PGQ TRL+L
Sbjct: 111 FDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLML 170
Query: 174 DMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMV 233
+M++VY C+PTF+SYNVVL++LV+GNCHKVA N+FYDMLS+ I PT++TFGVVMKA C V
Sbjct: 171 EMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAV 230
Query: 234 NEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTF 293
NE+DSA SLLRDMTKHGCVPNSV+YQTLIH+LSK NRV+EAL LLEEM LMGC D +TF
Sbjct: 231 NEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETF 290
Query: 294 NDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS 353
NDVI GLCK +RI+EAAK+V+RML+RGF PDDITYG LM+GLC+ GRVD A+ L +IP
Sbjct: 291 NDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK 350
Query: 354 ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALE 413
+V+ NT+I+G+V GR D+AKA+ D + S G +PDV T+N LI+G K+ G ALE
Sbjct: 351 PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALE 410
Query: 414 LVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT----------- 462
+++ M KGC+PN+ +YTILVDGFCK G++++A ++NEM A GL NT
Sbjct: 411 VLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFC 470
Query: 463 ------------------------------------GDRIEEALGLYQDMLLEGVTANTV 486
D I+ AL L +DM+ EGV ANTV
Sbjct: 471 KEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTV 530
Query: 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEM 546
TYNTLI+AFLRRG + EA KLVN+M+F+G PLDEITYN LIK LC AG VDK LFE+M
Sbjct: 531 TYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590
Query: 547 MRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI 606
+R G PS+ISCNILINGLCR+ A+EF ++M+ RG TPDIVT+NSLINGLC+ G I
Sbjct: 591 LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 650
Query: 607 QEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYIL 666
++ L +F KLQAEGI PD VT+NTL+SW K G DA L+L +G+ +GFVPN TW IL
Sbjct: 651 EDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSIL 710
Query: 667 VRNLVKEINMESWNF 681
+++++ + ++ F
Sbjct: 711 LQSIIPQETLDRRRF 725
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (779), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 185/616 (30%), Positives = 312/616 (50%), Gaps = 20/616 (3%)
Query: 79 ITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLL 138
+ P + +++ D ++E+F + G+ HT Y +I+KLG +F+ ++ VL+
Sbjct: 5 LLPKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLV 64
Query: 139 QMKEE-GIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVA 197
M+E G E +++ MK YGR G +A + M Y C+PT SYN ++ VLV
Sbjct: 65 DMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERM-DFYDCEPTVFSYNAIMSVLVD 123
Query: 198 GNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVV 257
A ++ M +GI+P VY+F + MK+ C + +A LL +M+ GC N V
Sbjct: 124 SGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVA 183
Query: 258 YQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML 317
Y T++ + N +E L +M+ G + + TFN ++ LCK + E KL+D+++
Sbjct: 184 YCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVI 243
Query: 318 VRGFTPDDITYGVLMHGLCRTGRVDEA----RALLNKIPSANVVLLNTVINGYVISGRFD 373
RG P+ TY + + GLC+ G +D A L+ + P +V+ N +I G + +F
Sbjct: 244 KRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQ 303
Query: 374 EAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTIL 433
EA+ ++ M++ G PD +T+N LI G CK A +V G P+ TY L
Sbjct: 304 EAE-VYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSL 362
Query: 434 VDGFCKEGQLEKANIIINEMLAKGL------------SLNTGDRIEEALGLYQDMLLEGV 481
+DG C EG+ +A + NE L KG+ L+ I EA L +M +G+
Sbjct: 363 IDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGL 422
Query: 482 TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLG 541
T+N L++ + G + +A LV M+ +G D T+N LI ++ L
Sbjct: 423 IPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALE 482
Query: 542 LFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC 601
+ + M+ G+ P + N L+NGLC+T K +E + M+ +G P++ T+N L+ LC
Sbjct: 483 ILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLC 542
Query: 602 KMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHK-GVANGFVPND 660
+ + EAL L ++++ + + PDAVT+ TLI K G D A+ + K A +
Sbjct: 543 RYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSST 602
Query: 661 ATWYILVRNLVKEINM 676
T+ I++ +++N+
Sbjct: 603 PTYNIIIHAFTEKLNV 618
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (745), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 186/616 (30%), Positives = 306/616 (49%), Gaps = 60/616 (9%)
Query: 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRES 150
PL+ S ++F A + +I+ + +F ++ +L +++ E + E
Sbjct: 54 PLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIER 113
Query: 151 LFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLV-AGNCHKVAPNLFY 209
FI++ + YG+ +P +A L M + C+ + +S+N VL+V++ G H+ FY
Sbjct: 114 SFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLE--FY 171
Query: 210 DM-----LSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHA 264
D ++ ISP +F +V+KALC + VD A + R M + C+P+ Y TL+
Sbjct: 172 DYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDG 231
Query: 265 LSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD 324
L K R+ EA++LL+EM GC+ +N +I GLCK + KLVD M ++G P+
Sbjct: 232 LCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPN 291
Query: 325 DITYGVLMHGLCRTGRVDEARALLNKIPSA----NVVLLNTVINGYVISGRFDEAKAIFY 380
++TY L+HGLC G++D+A +LL ++ S+ N V T+ING V R +A +
Sbjct: 292 EVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLL- 350
Query: 381 DSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKE 440
SM G + +++LI GL K+ + A+ L MA KGC+PNIV Y++LVDG C+E
Sbjct: 351 SSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCRE 410
Query: 441 GQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGS 500
G+ +A I+N M+A G N TY++L+ F + G
Sbjct: 411 GKPNEAKEILNRMIA-----------------------SGCLPNAYTYSSLMKGFFKTGL 447
Query: 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNI 560
EA ++ +M GC ++ Y+ LI LC G V + + ++ +M+ GIKP +++ +
Sbjct: 448 CEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSS 507
Query: 561 LINGLCRTRKANTALEFLRDMI---HRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQ 617
+I GLC + AL+ +M+ PD+VTYN L++GLC I A++L + +
Sbjct: 508 IIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSML 567
Query: 618 AEGIYPDAVTYNT---------------------LISWHFKEGLFDDAFLILHKGVANGF 656
G PD +T NT L+ K A I+ +
Sbjct: 568 DRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLGKYL 627
Query: 657 VPNDATWYILVRNLVK 672
P +TW ++VR + K
Sbjct: 628 APKTSTWAMIVREICK 643
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (736), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 168/512 (32%), Positives = 285/512 (55%), Gaps = 17/512 (3%)
Query: 183 PTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSL 242
P+ +N +L + N ++ +L M + GIS +YT+ + + C +++ A ++
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 243 LRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCK 302
L M K G P+ V +L++ S R+S+A+ L+++M+ MG D TF +IHGL
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 303 VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIP----SANVVL 358
N+ EA LVD+M+ RG PD +TYG +++GLC+ G +D A +LL K+ A+VV+
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260
Query: 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAM 418
NT+I+G D+A +F + M + G PDVFT++ LI LC R+ A L++ M
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTE-MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM 319
Query: 419 AVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGL--------SLNTG----DRI 466
+ PN+VT++ L+D F KEG+L +A + +EM+ + + SL G DR+
Sbjct: 320 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 379
Query: 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGL 526
+EA +++ M+ + N VTY+TLI F + + E +L +M RG + +TY L
Sbjct: 380 DEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTL 439
Query: 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL 586
I A D +F++M+ G+ P+ ++ NIL++GLC+ K A+ + +
Sbjct: 440 IHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTM 499
Query: 587 TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFL 646
PDI TYN +I G+CK G +++ LF L +G+ P+ + YNT+IS ++G ++A
Sbjct: 500 EPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADS 559
Query: 647 ILHKGVANGFVPNDATWYILVRNLVKEINMES 678
+L K +G +PN T+ L+R +++ + E+
Sbjct: 560 LLKKMKEDGPLPNSGTYNTLIRARLRDGDREA 591
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (722), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 158/475 (33%), Positives = 267/475 (56%), Gaps = 17/475 (3%)
Query: 215 GISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEA 274
G+S +YT+ +++ LC +++ A ++L M K G P+ V +L++ NR+SEA
Sbjct: 95 GVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEA 154
Query: 275 LMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHG 334
+ L+++M+ MG D TF ++HGL + N+ EA LV+RM+V+G PD +TYG +++G
Sbjct: 155 VALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVING 214
Query: 335 LCRTGRVDEARALLNKIP----SANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIP 390
LC+ G D A LLNK+ A+VV+ +TVI+ D+A +F + M + G P
Sbjct: 215 LCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTE-MDNKGIRP 273
Query: 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIII 450
DVFT++ LI LC R+ A L++ M + PN+VT+ L+D F KEG+L +A +
Sbjct: 274 DVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLF 333
Query: 451 NEMLAKGLSLNT------------GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRR 498
+EM+ + + N DR++EA ++ M+ + + VTYNTLI+ F +
Sbjct: 334 DEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKA 393
Query: 499 GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISC 558
+ + +L DM RG + +TY LI A D +F++M+ G+ P+ ++
Sbjct: 394 KKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTY 453
Query: 559 NILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618
N L++GLC+ K A+ + + PDI TYN + G+CK G +++ +LF L
Sbjct: 454 NTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSL 513
Query: 619 EGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKE 673
+G+ PD + YNT+IS K+GL ++A+ + K +G +P+ T+ L+R +++
Sbjct: 514 KGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRD 568
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (722), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 165/507 (32%), Positives = 280/507 (55%), Gaps = 17/507 (3%)
Query: 183 PTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSL 242
P+ ++ +L + N + +L M + GIS +YT+ +++ C +++ A ++
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 243 LRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCK 302
L M K G P+ V +L++ NR+S+A+ L+ +M+ MG D TFN +IHGL +
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198
Query: 303 VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSAN----VVL 358
NR EA LVDRM+V+G PD +TYG++++GLC+ G +D A +LL K+ VV+
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVI 258
Query: 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAM 418
NT+I+ ++A +F + M + G P+V T+N LI LC R+ A L++ M
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTE-MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 419 AVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGL--------SLNTG----DRI 466
+ PN+VT++ L+D F KEG+L +A + +EM+ + + SL G DR+
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGL 526
+EA +++ M+ + N VTYNTLI F + + E +L +M RG + +TY L
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL 586
I A D +F++M+ G+ P ++ +IL++GLC K TAL + +
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKM 497
Query: 587 TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFL 646
PDI TYN +I G+CK G +++ +LF L +G+ P+ VTY T++S ++GL ++A
Sbjct: 498 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADA 557
Query: 647 ILHKGVANGFVPNDATWYILVRNLVKE 673
+ + G +P+ T+ L+R +++
Sbjct: 558 LFREMKEEGPLPDSGTYNTLIRAHLRD 584
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (720), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 176/605 (29%), Positives = 292/605 (48%), Gaps = 18/605 (2%)
Query: 80 TPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQ 139
T +L LR D ++ +F A + + +Y ++ +LG + F + +L
Sbjct: 49 TDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILED 108
Query: 140 MKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGN 199
MK S F+++++ Y + + + ++ M +G +P YN +L++LV GN
Sbjct: 109 MKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGN 168
Query: 200 CHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQ 259
K+ M GI P V TF V++KALC +++ A +L DM +G VP+ +
Sbjct: 169 SLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFT 228
Query: 260 TLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVR 319
T++ + + AL + E+M+ GC+ + N ++HG CK R+ +A + M +
Sbjct: 229 TVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ 288
Query: 320 -GFTPDDITYGVLMHGLCRTGRVDEA----RALLNKIPSANVVLLNTVINGYVISGRFDE 374
GF PD T+ L++GLC+ G V A +L + +V N+VI+G G E
Sbjct: 289 DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKE 348
Query: 375 AKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILV 434
A + D M++ C P+ T+N LI LCK+ + A EL + KG P++ T+ L+
Sbjct: 349 AVEVL-DQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407
Query: 435 DGFCKEGQLEKANIIINEMLAKGL------------SLNTGDRIEEALGLYQDMLLEGVT 482
G C A + EM +KG SL + +++EAL + + M L G
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467
Query: 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGL 542
+ +TYNTLI F + EA ++ ++M G + +TYN LI LC + V+ L
Sbjct: 468 RSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQL 527
Query: 543 FEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK 602
++M+ +G KP + N L+ CR A + ++ M G PDIVTY +LI+GLCK
Sbjct: 528 MDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587
Query: 603 MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDAT 662
G ++ A L +Q +GI YN +I F++ +A + + + P DA
Sbjct: 588 AGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAV 647
Query: 663 WYILV 667
Y +V
Sbjct: 648 SYRIV 652
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (715), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 177/609 (29%), Positives = 300/609 (49%), Gaps = 25/609 (4%)
Query: 78 KITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVL 137
+I + K LR V ++ F + + HT + V+I KL + + + +L
Sbjct: 40 EIKELDVVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLL 99
Query: 138 LQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVA 197
QMK +G C E LFI ++ Y + G+ +A + +K +GC P+ + YN VLD L+
Sbjct: 100 QQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKE-FGCDPSVKIYNHVLDTLLG 158
Query: 198 GNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVV 257
N ++ ++ DM G P V+T+ V++KALC N+VD A LL +M+ GC P++V
Sbjct: 159 ENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVS 218
Query: 258 YQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML 317
Y T+I ++ + V E L E V +N +I+GLCK + A +L+ M+
Sbjct: 219 YTTVISSMCEVGLVKEGRELAERF-----EPVVSVYNALINGLCKEHDYKGAFELMREMV 273
Query: 318 VRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS----ANVVLLNTVINGYVISGRFD 373
+G +P+ I+Y L++ LC +G+++ A + L ++ N+ L++++ G + G
Sbjct: 274 EKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTF 333
Query: 374 EAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTIL 433
+A ++ + G P+V +N L+ G C A+ + + M GC PNI TY L
Sbjct: 334 DALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSL 393
Query: 434 VDGFCKEGQLEKANIIINEMLAKGLSLNT------------GDRIEEALGLYQDMLLEGV 481
++GF K G L+ A I N+ML G N + +EA L + M E
Sbjct: 394 INGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENC 453
Query: 482 TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG-CPLDEITYNGLIKALCNAGAVDKGL 540
+ T+N I G L A K+ M + CP + +TYN L+ L A +++
Sbjct: 454 APSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAY 513
Query: 541 GLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600
GL E+ +G++ SS + N L++G C AL+ + M+ G +PD +T N +I
Sbjct: 514 GLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAY 573
Query: 601 CKMGCIQEALNLFDKLQA--EGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVP 658
CK G + A + D + PD ++Y +I + +D ++L + ++ G VP
Sbjct: 574 CKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVP 633
Query: 659 NDATWYILV 667
+ ATW +L+
Sbjct: 634 SIATWSVLI 642
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 163/507 (32%), Positives = 279/507 (55%), Gaps = 17/507 (3%)
Query: 183 PTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSL 242
P+ +N +L + N + +L M + IS +Y++ +++ C +++ A ++
Sbjct: 78 PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137
Query: 243 LRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCK 302
L M K G P+ V +L++ R+SEA+ L+++M +M + TFN +IHGL
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFL 197
Query: 303 VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIP----SANVVL 358
N+ EA L+DRM+ RG PD TYG +++GLC+ G +D A +LL K+ A+VV+
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257
Query: 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAM 418
T+I+ ++A +F + M + G P+V T+N LI LC R+ A L++ M
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTE-MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 316
Query: 419 AVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGL--------SLNTG----DRI 466
+ PN+VT++ L+D F KEG+L +A + +EM+ + + SL G DR+
Sbjct: 317 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 376
Query: 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGL 526
+EA +++ M+ + N VTYNTLI F + + E +L +M RG + +TYN L
Sbjct: 377 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436
Query: 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL 586
I+ L AG D +F++M+ G+ P I+ +IL++GLC+ K AL + +
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496
Query: 587 TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFL 646
PDI TYN +I G+CK G +++ +LF L +G+ P+ + Y T+IS ++GL ++A
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 647 ILHKGVANGFVPNDATWYILVRNLVKE 673
+ + +G +PN T+ L+R +++
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRD 583
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 163/512 (31%), Positives = 280/512 (54%), Gaps = 17/512 (3%)
Query: 183 PTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSL 242
P+ ++ +L + N V +L M + GI YT+ +++ C +++ A ++
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 243 LRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCK 302
L M K G PN V +L++ S R+SEA+ L+++M + G + TFN +IHGL
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 303 VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSAN----VVL 358
N+ EA L+DRM+ +G PD +TYGV+++GLC+ G D A LLNK+ V++
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258
Query: 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAM 418
NT+I+G D+A +F + M + G P+V T++ LI LC R+ A L++ M
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKE-METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 317
Query: 419 AVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGL--------SLNTG----DRI 466
+ P++ T++ L+D F KEG+L +A + +EM+ + + SL G DR+
Sbjct: 318 IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRL 377
Query: 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGL 526
+EA +++ M+ + + VTYNTLI F + + E ++ +M RG + +TYN L
Sbjct: 378 DEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 437
Query: 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL 586
I+ L AG D +F+EM+ G+ P+ ++ N L++GLC+ K A+ + +
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497
Query: 587 TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFL 646
P I TYN +I G+CK G +++ +LF L +G+ PD V YNT+IS ++G ++A
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADA 557
Query: 647 ILHKGVANGFVPNDATWYILVRNLVKEINMES 678
+ + +G +PN + L+R +++ + E+
Sbjct: 558 LFKEMKEDGTLPNSGCYNTLIRARLRDGDREA 589
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 681 | ||||||
| 147798083 | 722 | hypothetical protein VITISV_039434 [Viti | 0.976 | 0.921 | 0.671 | 0.0 | |
| 359497112 | 740 | PREDICTED: pentatricopeptide repeat-cont | 0.920 | 0.847 | 0.698 | 0.0 | |
| 255539805 | 774 | pentatricopeptide repeat-containing prot | 0.977 | 0.860 | 0.662 | 0.0 | |
| 224086515 | 724 | predicted protein [Populus trichocarpa] | 0.980 | 0.922 | 0.652 | 0.0 | |
| 356499327 | 725 | PREDICTED: pentatricopeptide repeat-cont | 0.910 | 0.855 | 0.660 | 0.0 | |
| 357494039 | 948 | Auxin response factor [Medicago truncatu | 0.953 | 0.684 | 0.624 | 0.0 | |
| 449443698 | 732 | PREDICTED: pentatricopeptide repeat-cont | 0.964 | 0.897 | 0.581 | 0.0 | |
| 449508997 | 732 | PREDICTED: pentatricopeptide repeat-cont | 0.964 | 0.897 | 0.579 | 0.0 | |
| 297797449 | 724 | pentatricopeptide repeat-containing prot | 0.916 | 0.861 | 0.600 | 0.0 | |
| 15237662 | 730 | pentatricopeptide repeat-containing prot | 0.922 | 0.860 | 0.588 | 0.0 |
| >gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/724 (67%), Positives = 565/724 (78%), Gaps = 59/724 (8%)
Query: 1 MLKSPKLTSHVSKTLFKSLSKRPSFVFFSFGFSNSCTIDYSNCTARSICQSNDSESENEW 60
MLK PK T ++ + FK+ PSF GF+ + N T + +N +S EW
Sbjct: 10 MLKIPKFTKNL-QYFFKT----PSFSISPSGFNR-----FYNDTVFN--NTNGLDSGTEW 57
Query: 61 ERLLKPFDLNELRKSLHKITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVL 120
ERLLKPFDL ELR SL +ITP+QLCKLL LPLDV TSME+F WAG+Q+GYCH FDVYY+L
Sbjct: 58 ERLLKPFDLPELRTSLTRITPYQLCKLLELPLDVPTSMELFQWAGTQKGYCHMFDVYYML 117
Query: 121 IDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYG 180
IDKLGA EFK ID++L+QMK+EGI+ RESLFILIMK+YGR G+PGQATRLLLDM+ VY
Sbjct: 118 IDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYS 177
Query: 181 CQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSAC 240
C+PTFRSYNVVLDVL+AGNC KV PN+FY+MLSKGISPTVYTFGVVMKALC+VNEVDSAC
Sbjct: 178 CEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSAC 237
Query: 241 SLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGL 300
+LL+DMT+HGCVPN++VYQTLIHAL K RV+E L LLEEM+LMGC DV TFND IHGL
Sbjct: 238 ALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGL 297
Query: 301 CKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLN 360
CK+ RIHEAAKLVDRML+RGFTP+ TYGVLMHGLCR G+VDEAR LLNK+P+ NVVL N
Sbjct: 298 CKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFN 357
Query: 361 TVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAV 420
T+INGYV GR DEAKA+ ++SMLSVGC PD+FT+N LI GLCK+ SA EL+N M +
Sbjct: 358 TLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQI 417
Query: 421 KGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT------------------ 462
KGCEPN++TYTIL+D FCKEG+LE+A +++EM KGL+LN
Sbjct: 418 KGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQD 477
Query: 463 -----GD------------------------RIEEALGLYQDMLLEGVTANTVTYNTLIH 493
GD + EEALGLYQDMLLEGV ANT+TYNTLIH
Sbjct: 478 ALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIH 537
Query: 494 AFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP 553
AFLRRG++ EA KLVNDMLFRGCPLD+ITYNGLIKALC AG ++KGL LFE+MM KG+ P
Sbjct: 538 AFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNP 597
Query: 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLF 613
++ISCNILINGLCRT ALEFLRDMIHRGLTPDIVTYNSLINGLCK G QEALNLF
Sbjct: 598 NNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF 657
Query: 614 DKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKE 673
DKLQ EGI PDA+TYNTLISWH KEG+FDDA L+L +GV +GF+PN+ TWYILV N +KE
Sbjct: 658 DKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKE 717
Query: 674 INME 677
+ E
Sbjct: 718 GDQE 721
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 954 bits (2466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/674 (69%), Positives = 543/674 (80%), Gaps = 47/674 (6%)
Query: 51 SNDSESENEWERLLKPFDLNELRKSLHKITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGY 110
+N +S EWERLLKPFDL ELR SL +ITP+QLCKLL LPLDV TSME+F WAG+Q+GY
Sbjct: 66 TNGLDSGTEWERLLKPFDLPELRTSLTRITPYQLCKLLELPLDVPTSMELFQWAGTQKGY 125
Query: 111 CHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATR 170
CH FDVYY+LIDKLGA EFK D++L+QMK+EGI+ RESLFILIMK+YGR G+PGQATR
Sbjct: 126 CHMFDVYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATR 185
Query: 171 LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKAL 230
LLLDM+ VY C+PTFRSYNVVLDVL+AGNC KV PN+FY+MLSKGISPTVYTFGVVMKAL
Sbjct: 186 LLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKAL 245
Query: 231 CMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDV 290
C+VNEVDSAC+LL+DMT+HGCVPN++VYQTLIHALSK RV+E L LLEEM+LMGC DV
Sbjct: 246 CLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDV 305
Query: 291 QTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNK 350
TFND IHGLCK+ RIHEAAKLVDRML+RGFTP+ TYGVLMHGLCR G+VDEAR LLNK
Sbjct: 306 NTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNK 365
Query: 351 IPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGS 410
+P+ NVVL NT+INGYV GR DEAKA+ ++SMLSVGC PD+FT+N LI GLCK+ S
Sbjct: 366 VPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVS 425
Query: 411 ALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT-------- 462
A EL+N M +KGCEPN++TYTIL+D FCKEG+LE+A +++EM KGL+LN
Sbjct: 426 ARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLIS 485
Query: 463 ---------------GD------------------------RIEEALGLYQDMLLEGVTA 483
GD + EEALGLYQDMLLEGV A
Sbjct: 486 ALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIA 545
Query: 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLF 543
NT+TYNTLIHAFLRRG++ EA KLVNDMLFRGCPLD+ITYNGLIKALC AG ++KGL LF
Sbjct: 546 NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALF 605
Query: 544 EEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM 603
E+MM KG+ P++ISCNILINGLCRT ALEFLRDMIHRGLTPDIVTYNSLINGLCK
Sbjct: 606 EDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKT 665
Query: 604 GCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATW 663
G QEALNLFDKLQ EGI PDA+TYNTLISWH KEG+FDDA L+L +GV +GF+PN+ TW
Sbjct: 666 GRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTW 725
Query: 664 YILVRNLVKEINME 677
YILV N +KE + E
Sbjct: 726 YILVSNFIKEGDQE 739
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 949 bits (2453), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/725 (66%), Positives = 553/725 (76%), Gaps = 59/725 (8%)
Query: 1 MLKSPKLTSHVSKTLFKSLSKRPSFVFFSFGFSNSCTIDYSNCTARSICQSNDSESENEW 60
MLK KL HV +TL +SL PS +F GF + + S + +DSE+E EW
Sbjct: 1 MLKGAKLMVHVGETL-QSL---PSLQYFILGFPRNYSF--------SKLKDDDSENETEW 48
Query: 61 ERLLKPFDLNELRKSLHKITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVL 120
ERLLKPFDL ELR+S ++ITPFQLCKLL LPLDV TSM IF WAGSQ+GYCHTFDVY+VL
Sbjct: 49 ERLLKPFDLKELRRSFNQITPFQLCKLLLLPLDVSTSMAIFQWAGSQKGYCHTFDVYHVL 108
Query: 121 IDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYG 180
IDKLGA KEFKVID +LLQ+KEEGI RESLFI IMKYYGR +PGQATR+LLDMK VY
Sbjct: 109 IDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDMKGVYC 168
Query: 181 CQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSAC 240
C+PTF+SYNVVLD+LV+ NC VA N+FY+MLSKG+ PTVYTFGVVMKALCMVNEVD+AC
Sbjct: 169 CEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNAC 228
Query: 241 SLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGL 300
SLLRDMTKHGCVPNSVVYQTLIHALSK +RV+EAL LLEEM LMGC DV TFNDVI+GL
Sbjct: 229 SLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGL 288
Query: 301 CKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLN 360
C++NRIHE AKLVDRML RGFTP+DITYGVLM+GLCR G+VDEA+ LLNK+P+ N V
Sbjct: 289 CRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFT 348
Query: 361 TVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAV 420
+INGYV SGR DEA A YD M+ GC PDVFTFN LIHGLCK+ GSA+++VN M+
Sbjct: 349 ILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSA 408
Query: 421 KGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTG----------------- 463
GC PN++TYT L+DGFCK+ QLE+A ++NEM AKG LN
Sbjct: 409 NGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPK 468
Query: 464 ------------------------------DRIEEALGLYQDMLLEGVTANTVTYNTLIH 493
DR E+AL LY+DMLL+GV ANTVTYNTLIH
Sbjct: 469 ALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIH 528
Query: 494 AFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP 553
AFLR G++ EA KLVNDMLFRGCPLDEITYNGLIKA C GA +K LGLF+EM+RK + P
Sbjct: 529 AFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVP 588
Query: 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLF 613
S+ISCN+LINGLCR K ALE LRDMIHRGL PD+VTYNSLINGLCKMG I+EA NLF
Sbjct: 589 SNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLF 648
Query: 614 DKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKE 673
+KLQAEGI PDA+TYNTLI WH + G+FDDA+L+L +GV N F+PND TWYILV N +KE
Sbjct: 649 NKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIKE 708
Query: 674 INMES 678
I E+
Sbjct: 709 IGKEN 713
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa] gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 949 bits (2452), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/725 (65%), Positives = 553/725 (76%), Gaps = 57/725 (7%)
Query: 1 MLKSPKLTSHVSKTLFKSLSKRPSFVFFSFGFSNSCTIDYSNCTARSICQSNDSESENEW 60
MLK PKL + VSKTL + K S F GF +S ++ N+S E EW
Sbjct: 1 MLKGPKL-APVSKTL-QIFIKTQSLSLFPSGFVRK----FSGFNSKD----NESAHETEW 50
Query: 61 ERLLKPFDLNELRKSLHKITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVL 120
ERLLKPFDL ELR+S +KITPFQLCKLL LPLDV+TSMEIF WAG+Q+GYCH+F VYY+L
Sbjct: 51 ERLLKPFDLKELRRSFNKITPFQLCKLLELPLDVETSMEIFKWAGAQKGYCHSFSVYYLL 110
Query: 121 IDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYG 180
IDKLGA FKVID +LLQMKEEGI+ RESLFILIMKYYGR G+PGQATRLLLDMK VY
Sbjct: 111 IDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYC 170
Query: 181 CQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSAC 240
C+P+FRSYNVVLDVLV GNC VA N+FYDMLSKG+SP YTFG+VMKALCMVNEVD+AC
Sbjct: 171 CEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNAC 230
Query: 241 SLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGL 300
LLRDMTKHGCVPNS++YQTLI ALSK +RV EAL LLEEM LMGC DV TFN VI+G
Sbjct: 231 LLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGF 290
Query: 301 CKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLN 360
C++NR+ E AKLVDRM+++GFTP+D+TYG LMHGLC+T R+DEA+ALL+K+P NVV N
Sbjct: 291 CRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFN 350
Query: 361 TVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAV 420
T++NG+V +GR +EA A YD M++ G +PDVFTF+ L++GLCK+ FGSALELVN M
Sbjct: 351 TLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDA 410
Query: 421 KGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT------------------ 462
KGC+PN+ TYTIL+DGFCK+GQLE+A +I+ EML KG SLNT
Sbjct: 411 KGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHE 470
Query: 463 -----------------------------GDRIEEALGLYQDMLLEGVTANTVTYNTLIH 493
D +E+AL LY+DM+LEGV AN+VT+NTLIH
Sbjct: 471 ALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIH 530
Query: 494 AFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP 553
AFLRRG + EA KLVNDMLFRGCPLDEITYNGLIKALC GAV+KGLGLFEEM+RKG+ P
Sbjct: 531 AFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTP 590
Query: 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLF 613
S I+CNILING C K + ALEF+RDMIHRG +PDIVTYNSLINGLCK G IQEALNLF
Sbjct: 591 SIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLF 650
Query: 614 DKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKE 673
+KLQAEGI PD++TYNTLI W +EG FDDA +L++GV NGFVPND TW ILV N K+
Sbjct: 651 EKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGKQ 710
Query: 674 INMES 678
N E
Sbjct: 711 SNSEG 715
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/669 (66%), Positives = 527/669 (78%), Gaps = 49/669 (7%)
Query: 55 ESENEWERLLKPFDLNELRKSLH--KITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCH 112
++E EWERLLKPFDL +LR+SL I+PFQLCKLL LPLD+ TSME+F AG+Q+GY H
Sbjct: 38 DNETEWERLLKPFDLKQLRRSLSLTPISPFQLCKLLELPLDIPTSMELFQRAGAQKGYSH 97
Query: 113 TFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLL 172
TFD Y+LIDKLGA +FKVI+ +L QMK+EG++ +ESLFILIMK+YG+ G+PGQATRLL
Sbjct: 98 TFDACYLLIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLL 157
Query: 173 LDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCM 232
LDM VY C PTF+SYNVVLD+LV G+C +VAPN+FYDMLS+G+SPTVYTFGVVMKALCM
Sbjct: 158 LDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCM 217
Query: 233 VNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQT 292
V+EVDSACSLLRDM KHGCVPNSV+YQTLIHAL ++NRVSEAL LLE+M LM C DVQT
Sbjct: 218 VSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQT 277
Query: 293 FNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIP 352
FNDVIHGLC+ RIHEAAKL+DRML+RGF+ D +TYG LMHGLCR G+VDEARALLNKIP
Sbjct: 278 FNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIP 337
Query: 353 SANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSAL 412
+ N VL NT+I+GYV SGRF+EAK + Y++M+ G PD +TFNI+I GL K+ SAL
Sbjct: 338 NPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSAL 397
Query: 413 ELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT---------- 462
EL+N M K EPN++TYTIL++GFCK+G+LE+A I+N M AKGLSLNT
Sbjct: 398 ELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICAL 457
Query: 463 -------------------------------------GDRIEEALGLYQDMLLEGVTANT 485
++EEAL LY DM LEGV ANT
Sbjct: 458 CKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANT 517
Query: 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEE 545
VTYNTL+HAFL R S+ +A KLV++MLFRGCPLD ITYNGLIKALC GAV+KGLGLFEE
Sbjct: 518 VTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEE 577
Query: 546 MMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC 605
M+ KGI P+ ISCNILI+GLCRT K N AL+FL+DMIHRGLTPDIVTYNSLINGLCKMG
Sbjct: 578 MLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGH 637
Query: 606 IQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYI 665
+QEA NLF+KLQ+EGI PDA+TYNTLIS H EG+F+DA L+L+KGV +GF+PN+ TW I
Sbjct: 638 VQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSI 697
Query: 666 LVRNLVKEI 674
L+ +VK+I
Sbjct: 698 LINYIVKKI 706
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula] gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/713 (62%), Positives = 526/713 (73%), Gaps = 64/713 (8%)
Query: 29 SFGFSNSCTI-----DYSNCTARSICQSNDSESENEWERLLKPFDLNELRKSLHKITPFQ 83
SFGFS + + + CT + +++D+E WE LLKP+DL L++SL+ ITP Q
Sbjct: 8 SFGFSRTLLVCIKIQSFPLCTTTPLGKNDDTE----WENLLKPYDLKHLQRSLNPITPSQ 63
Query: 84 LCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEE 143
LCKLL LPLDV TSM++F AG Q GY H+F VYY+LIDKLG EFK+ID +L QMK+E
Sbjct: 64 LCKLLELPLDVPTSMDLFEKAGLQRGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDE 123
Query: 144 GIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKV 203
G + +ESLFILIM+YYG+ G+PGQATRLLLDM VY +PTF+SYNVVL++LVAGNC KV
Sbjct: 124 GCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKV 183
Query: 204 APNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIH 263
APN+FYDMLS+GISPTVYTFGVVMKA CMVNEVDSACSLLRDMTKHGCVPNS++YQ LIH
Sbjct: 184 APNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIH 243
Query: 264 ALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTP 323
ALS++NRV+EA+ LLEEM LMGC DVQTFNDVIHGLCK RIHEAAKL DRML+R FT
Sbjct: 244 ALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTA 303
Query: 324 DDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSM 383
D + G LMHGLCR G+VDEARA+L+KIP+ N VL NT+INGYV+SGRF+EAK + Y +M
Sbjct: 304 DALIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNM 363
Query: 384 LSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQL 443
+ G PD FTFNI+I GLCK+ SALE ++ M KG EPN++TYTIL+DGFCK+G
Sbjct: 364 VIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHF 423
Query: 444 EKANIIINEMLAKGLSLNT----------------------------------------- 462
E+A+ ++N M AKGLSLNT
Sbjct: 424 EEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSL 483
Query: 463 ------GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC 516
D++EEALGLY+DMLLEGV ANTVTYNTLIHAFLR + +A KLV +M FRGC
Sbjct: 484 IYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGC 543
Query: 517 PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALE 576
PLD ITYNGLIKALC GA +K LGL E+M + I PS SCNILIN CRT K N AL+
Sbjct: 544 PLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQ 603
Query: 577 FLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHF 636
FLRDMI RGLTPDIVTYNSLINGLCKMG QEALNLF+ LQA+GI+PDAVTYNTLIS +
Sbjct: 604 FLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYC 663
Query: 637 KEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKE--------INMESWNF 681
EGLF+DA +L KGV+NGF+PN+ TW IL+ VK I M +W F
Sbjct: 664 YEGLFNDACQLLFKGVSNGFIPNEITWSILINYFVKNNSDSEQFTILMGNWGF 716
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/716 (58%), Positives = 526/716 (73%), Gaps = 59/716 (8%)
Query: 17 KSLSKRPSFVFFSFGFSNSCTIDYSNCTARSICQSND-------SESENEWERLLKPFDL 69
KSLS S + F NSC + A +I +D SE EWE LL+PFDL
Sbjct: 13 KSLSSSESKIIILF--ENSCKASF---LAGNIGDGSDPIKMNVESEPATEWESLLEPFDL 67
Query: 70 NELRKSLHKITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKE 129
+LRKS ITP QLCKLL LPLDV T +EIF G Q+GYCHTFDVYYV I+KLGA +
Sbjct: 68 TKLRKSHILITPVQLCKLLELPLDVPTLLEIFERVGGQKGYCHTFDVYYVFINKLGAIGK 127
Query: 130 FKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYN 189
FK+ID +L+QMKEEGI+ RES+F++IMK+YG+ G PGQA RLLLDM++VY C+PTF+SY+
Sbjct: 128 FKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYD 187
Query: 190 VVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKH 249
+VL++LV GNC +VA N+FYDMLSKG+SPTV+TFG+VMKALCM NEVDSACSLLRDMTKH
Sbjct: 188 LVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKH 247
Query: 250 GCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEA 309
GCVPNS+VYQTLIHALS+ N+VSEAL LLEEM +MGC DVQTFNDVIHGLCKVN+IH+A
Sbjct: 248 GCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDA 307
Query: 310 AKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVIS 369
KLVDRML+RGF PD++TYG L+HGLCR G+++EAR +L KIP N +LNT+INGYV+S
Sbjct: 308 TKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMS 367
Query: 370 GRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVT 429
G+ EA++ ++M++ G PD+FT+NIL+HGLCK+ A +LVN M+ +GCEPN++T
Sbjct: 368 GQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVIT 427
Query: 430 YTILVDGFCKEGQLEKANIIINEMLAKGLSLNT--------------------------- 462
Y ILV+G CK G LE+A ++++EM A+GL++N+
Sbjct: 428 YAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMC 487
Query: 463 --------------------GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLH 502
DRI+EA L+ +MLL+G AN VTYNTLIHA LRRG+
Sbjct: 488 TKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQ 547
Query: 503 EAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILI 562
+A LVNDMLFRGC LD+ITYNGLIKA C G ++KGL L+E+M+ G+ +ISCNI+I
Sbjct: 548 KALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMI 607
Query: 563 NGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIY 622
NGLC+ K + A EFLRD I+RG PDIVTYNS++NGLCK+G I+EALNLFD+LQ EG+
Sbjct: 608 NGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVR 667
Query: 623 PDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINMES 678
PDA TYNT ISW KEG+ +DA L ++G+ NGFVP++ TW +LV L+K+ N E+
Sbjct: 668 PDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQSNQEN 723
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 849 bits (2194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/716 (57%), Positives = 525/716 (73%), Gaps = 59/716 (8%)
Query: 17 KSLSKRPSFVFFSFGFSNSCTIDYSNCTARSICQSND-------SESENEWERLLKPFDL 69
KSLS S + F NSC + A +I +D SE EWE LL+PFDL
Sbjct: 13 KSLSSSESKIIILF--ENSCKASF---LAGNIGDGSDPIKMNVESEPATEWESLLEPFDL 67
Query: 70 NELRKSLHKITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKE 129
+LRKS ITP QLCKLL LPLDV T +EIF G Q+GYCHTFDVYYV I+KLGA +
Sbjct: 68 TKLRKSRILITPVQLCKLLELPLDVPTLLEIFERVGGQKGYCHTFDVYYVFINKLGAIGK 127
Query: 130 FKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYN 189
FK+ID +L+QMKEEGI+ RES+F++IMK+YG+ G PGQA RLLLDM++VY C+PTF+SY+
Sbjct: 128 FKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYD 187
Query: 190 VVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKH 249
+VL++LV GNC +VA N+FYDMLSKG+SPTV+TFG+VMKALCM NEVDSACSLLRDMTKH
Sbjct: 188 LVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKH 247
Query: 250 GCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEA 309
GCVPNS+VYQTLIHALS+ N+VSEAL LLEEM +MGC DVQTFNDVIHGLCKVN+IH+A
Sbjct: 248 GCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDA 307
Query: 310 AKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVIS 369
KLVDRML+RGF PD++TYG L+HGLCR G+++EAR +L KIP N +LNT+INGYV+S
Sbjct: 308 TKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMS 367
Query: 370 GRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVT 429
G+ EA++ ++M++ G PD+FT+NIL+HGLCK+ A +LVN M+ +GCEPN++T
Sbjct: 368 GQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVIT 427
Query: 430 YTILVDGFCKEGQLEKANIIINEMLAKGLSLNT--------------------------- 462
Y ILV+G CK G LE+A ++++EM A+GL++N+
Sbjct: 428 YAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMC 487
Query: 463 --------------------GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLH 502
DRI+EA L+ +MLL+G AN VTYNTLIHA LRRG+
Sbjct: 488 TKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQ 547
Query: 503 EAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILI 562
+A LVNDMLFRGC LD+ITYNGLIKA C G ++KGL L+E+M+ G+ +ISCNI+I
Sbjct: 548 KALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMI 607
Query: 563 NGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIY 622
NGLC+ K + A EFLRD I+RG PDIVTYNS++NGLCK+G I+EALNLFD+LQ EG+
Sbjct: 608 NGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVR 667
Query: 623 PDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINMES 678
PDA TYNT ISW KEG+ +DA ++G+ NGFVP++ TW +LV L+K+ N E+
Sbjct: 668 PDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQEN 723
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/671 (60%), Positives = 498/671 (74%), Gaps = 47/671 (7%)
Query: 58 NEWERLLKPFDLNELRKSLHKITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVY 117
NEWE+LLKPFDL+ LR S HKITPFQLCKLL LPLDV TSME+F+W GSQ+GY H+FDVY
Sbjct: 49 NEWEKLLKPFDLDSLRNSFHKITPFQLCKLLELPLDVSTSMELFSWTGSQKGYRHSFDVY 108
Query: 118 YVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKS 177
VLI KLG+N EFK ID +L+QMK+EGI+ +ESLFI IM+ Y + G PGQ TRL+L+M++
Sbjct: 109 QVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRN 168
Query: 178 VYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVD 237
VY C+PTF+SYNVVL++LV+GNCHKVA N+FYDMLS+ I PT++TFGVVMKALC VNEVD
Sbjct: 169 VYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVD 228
Query: 238 SACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVI 297
SA S+LRDMTKHGCVPNSV+YQTLIH+LSK NRV+EAL LLEEM LMGC D +TFNDVI
Sbjct: 229 SALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVI 288
Query: 298 HGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVV 357
GLCK +RI+EAAK+V+RML+RGFTPDDITYG LM+GLC+ GRVD A+ L +IP V
Sbjct: 289 LGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSV 348
Query: 358 LLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNA 417
+ NT+I+G+V GR D+AKA+ D + S G +PDV T+N LI+G K+ G ALE++
Sbjct: 349 IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRD 408
Query: 418 MAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT--------------- 462
M KGC+PN+ +YTILVDGFCK G++++A ++NEM A GL NT
Sbjct: 409 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHR 468
Query: 463 --------------------------------GDRIEEALGLYQDMLLEGVTANTVTYNT 490
D I+ AL L +DM+ EGV ANTVTYNT
Sbjct: 469 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 528
Query: 491 LIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550
LI+AFLRRG + EA KLVN+M+F+G LDEITYN LIK LC AG VDK LFE+M+R G
Sbjct: 529 LINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 588
Query: 551 IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEAL 610
+ PSSISCNILINGLCR+ A+EF ++M+ RG TPDIVT+NSLINGLC+ G I++ L
Sbjct: 589 LVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 648
Query: 611 NLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNL 670
+F KLQAEGI PD VTYNTL+SW K G DA L+L +G+ +GFVPND TW IL+++L
Sbjct: 649 TMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSL 708
Query: 671 VKEINMESWNF 681
V + ++ F
Sbjct: 709 VPQETLDRRTF 719
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g64320, mitochondrial; Flags: Precursor gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana] gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/675 (58%), Positives = 498/675 (73%), Gaps = 47/675 (6%)
Query: 54 SESENEWERLLKPFDLNELRKSLHKITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHT 113
++S NEWE+LLKPFDL+ LR S HKITPFQL KLL LPL+V TSME+F+W GSQ GY H+
Sbjct: 51 TDSANEWEKLLKPFDLDSLRNSFHKITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHS 110
Query: 114 FDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLL 173
FDVY VLI KLGAN EFK ID +L+QMK+EGI+ +ESLFI IM+ Y + G PGQ TRL+L
Sbjct: 111 FDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLML 170
Query: 174 DMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMV 233
+M++VY C+PTF+SYNVVL++LV+GNCHKVA N+FYDMLS+ I PT++TFGVVMKA C V
Sbjct: 171 EMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAV 230
Query: 234 NEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTF 293
NE+DSA SLLRDMTKHGCVPNSV+YQTLIH+LSK NRV+EAL LLEEM LMGC D +TF
Sbjct: 231 NEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETF 290
Query: 294 NDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS 353
NDVI GLCK +RI+EAAK+V+RML+RGF PDDITYG LM+GLC+ GRVD A+ L +IP
Sbjct: 291 NDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK 350
Query: 354 ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALE 413
+V+ NT+I+G+V GR D+AKA+ D + S G +PDV T+N LI+G K+ G ALE
Sbjct: 351 PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALE 410
Query: 414 LVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT----------- 462
+++ M KGC+PN+ +YTILVDGFCK G++++A ++NEM A GL NT
Sbjct: 411 VLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFC 470
Query: 463 ------------------------------------GDRIEEALGLYQDMLLEGVTANTV 486
D I+ AL L +DM+ EGV ANTV
Sbjct: 471 KEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTV 530
Query: 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEM 546
TYNTLI+AFLRRG + EA KLVN+M+F+G PLDEITYN LIK LC AG VDK LFE+M
Sbjct: 531 TYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590
Query: 547 MRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI 606
+R G PS+ISCNILINGLCR+ A+EF ++M+ RG TPDIVT+NSLINGLC+ G I
Sbjct: 591 LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 650
Query: 607 QEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYIL 666
++ L +F KLQAEGI PD VT+NTL+SW K G DA L+L +G+ +GFVPN TW IL
Sbjct: 651 EDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSIL 710
Query: 667 VRNLVKEINMESWNF 681
+++++ + ++ F
Sbjct: 711 LQSIIPQETLDRRRF 725
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 681 | ||||||
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.908 | 0.847 | 0.513 | 9.4e-169 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.875 | 0.781 | 0.297 | 7.1e-77 | |
| TAIR|locus:2119747 | 660 | EMB1025 "embryo defective 1025 | 0.847 | 0.874 | 0.297 | 3.8e-69 | |
| TAIR|locus:2099458 | 659 | AT3G48810 "AT3G48810" [Arabido | 0.856 | 0.884 | 0.286 | 1e-68 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.712 | 0.769 | 0.320 | 2.7e-68 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.866 | 0.782 | 0.285 | 3.5e-68 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.726 | 0.785 | 0.310 | 2.8e-66 | |
| TAIR|locus:2015218 | 590 | AT1G63070 [Arabidopsis thalian | 0.715 | 0.825 | 0.321 | 5.8e-66 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.719 | 0.779 | 0.311 | 9.4e-66 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.703 | 0.830 | 0.320 | 1.5e-65 |
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1641 (582.7 bits), Expect = 9.4e-169, P = 9.4e-169
Identities = 324/631 (51%), Positives = 429/631 (67%)
Query: 54 SESENEWERLLKPFDLNELRKSLHKITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHT 113
++S NEWE+LLKPFDL+ LR S HKITPFQL KLL LPL+V TSME+F+W GSQ GY H+
Sbjct: 51 TDSANEWEKLLKPFDLDSLRNSFHKITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHS 110
Query: 114 FDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLL 173
FDVY VLI KLGAN EFK ID +L+QMK+EGI+ +ESLFI IM+ Y + G PGQ TRL+L
Sbjct: 111 FDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLML 170
Query: 174 DMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMV 233
+M++VY C+PTF+SYNVVL++LV+GNCHKVA N+FYDMLS+ I PT++TFGVVMKA C V
Sbjct: 171 EMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAV 230
Query: 234 NEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSXXXXXXXXXXXXGCTSDVQTF 293
NE+DSA SLLRDMTKHGCVPNSV+YQTLIH+LSK NRV+ GC D +TF
Sbjct: 231 NEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETF 290
Query: 294 NDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS 353
NDVI GLCK +RI+EAAK+V+RML+RGF PDDITYG LM+GLC+ GRVD A+ L +IP
Sbjct: 291 NDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK 350
Query: 354 ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALE 413
+V+ NT+I+G+V GR D+AKA+ D + S G +PDV T+N LI+G K+ G ALE
Sbjct: 351 PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALE 410
Query: 414 LVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT-G--------- 463
+++ M KGC+PN+ +YTILVDGFCK G++++A ++NEM A GL NT G
Sbjct: 411 VLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFC 470
Query: 464 --DRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEI 521
RI EA+ ++++M +G + T+N+LI + A L+ DM+ G + +
Sbjct: 471 KEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTV 530
Query: 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDM 581
TYN LI A G + + L EM+ +G I+ N LI GLCR + + A M
Sbjct: 531 TYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590
Query: 582 IHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLF 641
+ G P ++ N LINGLC+ G ++EA+ ++ G PD VT+N+LI+ + G
Sbjct: 591 LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 650
Query: 642 DDAFLILHKGVANGFVPNDATWYILVRNLVK 672
+D + K A G P+ T+ L+ L K
Sbjct: 651 EDGLTMFRKLQAEGIPPDTVTFNTLMSWLCK 681
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 183/616 (29%), Positives = 308/616 (50%)
Query: 79 ITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLL 138
+ P + +++ D ++E+F + G+ HT Y +I+KLG +F+ ++ VL+
Sbjct: 5 LLPKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLV 64
Query: 139 QMKEE-GIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVA 197
M+E G E +++ MK YGR G +A + M Y C+PT SYN ++ VLV
Sbjct: 65 DMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERM-DFYDCEPTVFSYNAIMSVLVD 123
Query: 198 GNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVV 257
A ++ M +GI+P VY+F + MK+ C + +A LL +M+ GC N V
Sbjct: 124 SGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVA 183
Query: 258 YQTLIHALSKSNRVSXXXXXXXXXXXXGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML 317
Y T++ + N + G + + TFN ++ LCK + E KL+D+++
Sbjct: 184 YCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVI 243
Query: 318 VRGFTPDDITYGVLMHGLCRTGRVDEA-R---ALLNKIPSANVVLLNTVINGYVISGRFD 373
RG P+ TY + + GLC+ G +D A R L+ + P +V+ N +I G + +F
Sbjct: 244 KRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQ 303
Query: 374 EAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTIL 433
EA+ ++ M++ G PD +T+N LI G CK A +V G P+ TY L
Sbjct: 304 EAE-VYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSL 362
Query: 434 VDGFCKEGQLEKANIIINEMLAKGLS------------LNTGDRIEEALGLYQDMLLEGV 481
+DG C EG+ +A + NE L KG+ L+ I EA L +M +G+
Sbjct: 363 IDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGL 422
Query: 482 TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLG 541
T+N L++ + G + +A LV M+ +G D T+N LI ++ L
Sbjct: 423 IPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALE 482
Query: 542 LFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC 601
+ + M+ G+ P + N L+NGLC+T K +E + M+ +G P++ T+N L+ LC
Sbjct: 483 ILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLC 542
Query: 602 KMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHK-GVANGFVPND 660
+ + EAL L ++++ + + PDAVT+ TLI K G D A+ + K A +
Sbjct: 543 RYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSST 602
Query: 661 ATWYILVRNLVKEINM 676
T+ I++ +++N+
Sbjct: 603 PTYNIIIHAFTEKLNV 618
|
|
| TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 184/619 (29%), Positives = 308/619 (49%)
Query: 79 ITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLL 138
++P +++ PL+ S ++F A + +I+ + +F ++ +L
Sbjct: 42 VSPNPSMEVVENPLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLS 101
Query: 139 QMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLV-A 197
+++ E + E FI++ + YG+ +P +A L M + C+ + +S+N VL+V++
Sbjct: 102 RIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINE 161
Query: 198 GNCHKVAPNLFYDM-----LSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCV 252
G H+ FYD ++ ISP +F +V+KALC + VD A + R M + C+
Sbjct: 162 GLYHRGLE--FYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCL 219
Query: 253 PNSVVYQTLIHALSKSNRVSXXXXXXXXXXXXGCTSDVQTFNDVIHGLCKVNRIHEAAKL 312
P+ Y TL+ L K R+ GC+ +N +I GLCK + KL
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKL 279
Query: 313 VDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSA----NVVLLNTVINGYVI 368
VD M ++G P+++TY L+HGLC G++D+A +LL ++ S+ N V T+ING V
Sbjct: 280 VDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVK 339
Query: 369 SGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIV 428
R +A + SM G + +++LI GL K+ + A+ L MA KGC+PNIV
Sbjct: 340 QRRATDAVRLL-SSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIV 398
Query: 429 TYTILVDGFCKEGQLEKANIIINEMLAKGL--------SLNTG----DRIEEALGLYQDM 476
Y++LVDG C+EG+ +A I+N M+A G SL G EEA+ ++++M
Sbjct: 399 VYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEM 458
Query: 477 LLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAV 536
G + N Y+ LI G + EA + + ML G D + Y+ +IK LC G++
Sbjct: 459 DKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSM 518
Query: 537 DKGLGLFEEMM---RKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTY 593
D L L+ EM+ +P ++ NIL++GLC + + A++ L M+ RG PD++T
Sbjct: 519 DAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITC 578
Query: 594 NSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653
N+ +N L E N DK ++ + + + L K A I+ +
Sbjct: 579 NTFLNTL------SEKSNSCDKGRS---FLEELVVRLL-----KRQRVSGACTIVEVMLG 624
Query: 654 NGFVPNDATWYILVRNLVK 672
P +TW ++VR + K
Sbjct: 625 KYLAPKTSTWAMIVREICK 643
|
|
| TAIR|locus:2099458 AT3G48810 "AT3G48810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 175/610 (28%), Positives = 298/610 (48%)
Query: 78 KITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVL 137
+I + K LR V ++ F + + HT + V+I KL + + + +L
Sbjct: 40 EIKELDVVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLL 99
Query: 138 LQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVA 197
QMK +G C E LFI ++ Y + G+ +A + +K +GC P+ + YN VLD L+
Sbjct: 100 QQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKE-FGCDPSVKIYNHVLDTLLG 158
Query: 198 GNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVV 257
N ++ ++ DM G P V+T+ V++KALC N+VD A LL +M+ GC P++V
Sbjct: 159 ENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVS 218
Query: 258 YQTLIHALSKSNRVSXXXXXXXXXXXXGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML 317
Y T+I ++ + V V +N +I+GLCK + A +L+ M+
Sbjct: 219 YTTVISSMCEVGLVKEGRELAERFEPV-----VSVYNALINGLCKEHDYKGAFELMREMV 273
Query: 318 VRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSA----NVVLLNTVINGYVISGRFD 373
+G +P+ I+Y L++ LC +G+++ A + L ++ N+ L++++ G + G
Sbjct: 274 EKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTF 333
Query: 374 EAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTIL 433
+A ++ + G P+V +N L+ G C A+ + + M GC PNI TY L
Sbjct: 334 DALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSL 393
Query: 434 VDGFCKEGQLEKANIIINEMLAKGLSLNT------------GDRIEEALGLYQDMLLEGV 481
++GF K G L+ A I N+ML G N + +EA L + M E
Sbjct: 394 INGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENC 453
Query: 482 TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG-CPLDEITYNGLIKALCNAGAVDKGL 540
+ T+N I G L A K+ M + CP + +TYN L+ L A +++
Sbjct: 454 APSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAY 513
Query: 541 GLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600
GL E+ +G++ SS + N L++G C AL+ + M+ G +PD +T N +I
Sbjct: 514 GLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAY 573
Query: 601 CKMGCIQEALNLFDKLQA--EGIYPDAVTYNTLISWHF-KEGLFDDAFLILHKGVANGFV 657
CK G + A + D + PD ++Y +I W + +D ++L + ++ G V
Sbjct: 574 CKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVI-WGLCRSNCREDGVILLERMISAGIV 632
Query: 658 PNDATWYILV 667
P+ ATW +L+
Sbjct: 633 PSIATWSVLI 642
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| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 161/502 (32%), Positives = 268/502 (53%)
Query: 183 PTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSL 242
P+ ++ +L + N + +L M + GIS +YT+ +++ C +++ A ++
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 243 LRDMTKHGCVPNSVVYQTLIHALSKSNRVSXXXXXXXXXXXXGCTSDVQTFNDVIHGLCK 302
L M K G P+ V +L++ NR+S G D TFN +IHGL +
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198
Query: 303 VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSAN----VVL 358
NR EA LVDRM+V+G PD +TYG++++GLC+ G +D A +LL K+ VV+
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVI 258
Query: 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAM 418
NT+I+ ++A +F + M + G P+V T+N LI LC R+ A L++ M
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTE-MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 419 AVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGL--------SLNTG----DRI 466
+ PN+VT++ L+D F KEG+L +A + +EM+ + + SL G DR+
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGL 526
+EA +++ M+ + N VTYNTLI F + + E +L +M RG + +TY L
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL 586
I A D +F++M+ G+ P ++ +IL++GLC K TAL + +
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKM 497
Query: 587 TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFL 646
PDI TYN +I G+CK G +++ +LF L +G+ P+ VTY T++S ++GL ++A
Sbjct: 498 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADA 557
Query: 647 ILHKGVANGFVPNDATWYILVR 668
+ + G +P+ T+ L+R
Sbjct: 558 LFREMKEEGPLPDSGTYNTLIR 579
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| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 174/609 (28%), Positives = 287/609 (47%)
Query: 80 TPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQ 139
T +L LR D ++ +F A + + +Y ++ +LG + F + +L
Sbjct: 49 TDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILED 108
Query: 140 MKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGN 199
MK S F+++++ Y + + + ++ M +G +P YN +L++LV GN
Sbjct: 109 MKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGN 168
Query: 200 CHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQ 259
K+ M GI P V TF V++KALC +++ A +L DM +G VP+ +
Sbjct: 169 SLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFT 228
Query: 260 TLIHALSKSNRVSXXXXXXXXXXXXGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVR 319
T++ + + GC+ + N ++HG CK R+ +A + M +
Sbjct: 229 TVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ 288
Query: 320 -GFTPDDITYGVLMHGLCRTGRVDEA----RALLNKIPSANVVLLNTVINGYVISGRFDE 374
GF PD T+ L++GLC+ G V A +L + +V N+VI+G G E
Sbjct: 289 DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKE 348
Query: 375 AKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILV 434
A + D M++ C P+ T+N LI LCK+ + A EL + KG P++ T+ L+
Sbjct: 349 AVEVL-DQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407
Query: 435 DGFCKEGQLEKANIIINEMLAKGL------------SLNTGDRIEEALGLYQDMLLEGVT 482
G C A + EM +KG SL + +++EAL + + M L G
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467
Query: 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGL 542
+ +TYNTLI F + EA ++ ++M G + +TYN LI LC + V+ L
Sbjct: 468 RSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQL 527
Query: 543 FEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK 602
++M+ +G KP + N L+ CR A + ++ M G PDIVTY +LI+GLCK
Sbjct: 528 MDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587
Query: 603 MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDAT 662
G ++ A L +Q +GI YN +I F++ +A + + + P DA
Sbjct: 588 AGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAV 647
Query: 663 WY-ILVRNL 670
Y I+ R L
Sbjct: 648 SYRIVFRGL 656
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 159/512 (31%), Positives = 271/512 (52%)
Query: 183 PTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSL 242
P+ ++ +L + N V +L M + GI YT+ +++ C +++ A ++
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 243 LRDMTKHGCVPNSVVYQTLIHALSKSNRVSXXXXXXXXXXXXGCTSDVQTFNDVIHGLCK 302
L M K G PN V +L++ S R+S G + TFN +IHGL
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 303 VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSAN----VVL 358
N+ EA L+DRM+ +G PD +TYGV+++GLC+ G D A LLNK+ V++
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258
Query: 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAM 418
NT+I+G D+A +F + M + G P+V T++ LI LC R+ A L++ M
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKE-METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 317
Query: 419 AVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGL--------SLNTG----DRI 466
+ P++ T++ L+D F KEG+L +A + +EM+ + + SL G DR+
Sbjct: 318 IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRL 377
Query: 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGL 526
+EA +++ M+ + + VTYNTLI F + + E ++ +M RG + +TYN L
Sbjct: 378 DEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 437
Query: 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL 586
I+ L AG D +F+EM+ G+ P+ ++ N L++GLC+ K A+ + +
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497
Query: 587 TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFL 646
P I TYN +I G+CK G +++ +LF L +G+ PD V YNT+IS ++G ++A
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADA 557
Query: 647 ILHKGVANGFVPNDATWYILVRNLVKEINMES 678
+ + +G +PN + L+R +++ + E+
Sbjct: 558 LFKEMKEDGTLPNSGCYNTLIRARLRDGDREA 589
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| TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 164/510 (32%), Positives = 271/510 (53%)
Query: 183 PTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSL 242
P+ ++ +L + N + +L M + GIS +YT+ + + C +++ A ++
Sbjct: 73 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132
Query: 243 LRDMTKHGCVPNSVVYQTLIHALSKSNRVSXXXXXXXXXXXXGCTSDVQTFNDVIHGLCK 302
L M K G P+ V +L++ NR+S G D TF ++HGL +
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 192
Query: 303 VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS----ANVVL 358
N+ EA LV+RM+V+G PD +TYG +++GLC+ G D A LLNK+ A+VV+
Sbjct: 193 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 252
Query: 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAM 418
NT+I+G D+A +F + M + G PDVFT+N LI LC R+ A L++ M
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLF-NKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDM 311
Query: 419 AVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKG------LSLNT---G----DR 465
K P++V + L+D F KEG+L +A + +EM+ ++ NT G R
Sbjct: 312 LEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKR 371
Query: 466 IEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNG 525
+EE + ++++M G+ NTVTY TLIH F + A + M+ G D +TYN
Sbjct: 372 VEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNI 431
Query: 526 LIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG 585
L+ LCN G V+ L +FE M ++ +K ++ +I LC+ K + + +G
Sbjct: 432 LLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKG 491
Query: 586 LTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAF 645
+ P++VTY ++++G C+ G +EA LF +++ +G P++ TYNTLI ++G D+A
Sbjct: 492 VKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDG--DEAA 549
Query: 646 LI-LHKGVAN-GFVPNDATWYILVRNLVKE 673
L K + + GF DA+ + LV N++ +
Sbjct: 550 SAELIKEMRSCGFA-GDASTFGLVTNMLHD 578
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| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 158/507 (31%), Positives = 269/507 (53%)
Query: 183 PTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSL 242
P+ +N +L + N + +L M + IS +Y++ +++ C +++ A ++
Sbjct: 78 PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137
Query: 243 LRDMTKHGCVPNSVVYQTLIHALSKSNRVSXXXXXXXXXXXXGCTSDVQTFNDVIHGLCK 302
L M K G P+ V +L++ R+S + TFN +IHGL
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFL 197
Query: 303 VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS----ANVVL 358
N+ EA L+DRM+ RG PD TYG +++GLC+ G +D A +LL K+ A+VV+
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257
Query: 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAM 418
T+I+ ++A +F + M + G P+V T+N LI LC R+ A L++ M
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTE-MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 316
Query: 419 AVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGL--------SLNTG----DRI 466
+ PN+VT++ L+D F KEG+L +A + +EM+ + + SL G DR+
Sbjct: 317 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 376
Query: 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGL 526
+EA +++ M+ + N VTYNTLI F + + E +L +M RG + +TYN L
Sbjct: 377 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436
Query: 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL 586
I+ L AG D +F++M+ G+ P I+ +IL++GLC+ K AL + +
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496
Query: 587 TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFL 646
PDI TYN +I G+CK G +++ +LF L +G+ P+ + Y T+IS ++GL ++A
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 647 ILHKGVANGFVPNDATWYILVRNLVKE 673
+ + +G +PN T+ L+R +++
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRD 583
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| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 159/496 (32%), Positives = 261/496 (52%)
Query: 183 PTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSL 242
P+ +N +L + + +L M GIS +YT+ +++ C +++ A +L
Sbjct: 83 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142
Query: 243 LRDMTKHGCVPNSVVYQTLIHALSKSNRVSXXXXXXXXXXXXGCTSDVQTFNDVIHGLCK 302
L M K G P+ V +L++ R+S G D TF +IHGL
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 303 VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSA----NVVL 358
N+ EA LVDRM+ RG P+ +TYGV+++GLC+ G +D A LLNK+ +A NVV+
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVI 262
Query: 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAM 418
+TVI+ D+A +F + M + G P+V T++ LI LC R+ A L++ M
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTE-MENKGVRPNVITYSSLISCLCNYERWSDASRLLSDM 321
Query: 419 AVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGL--------SLNTG----DRI 466
+ PN+VT+ L+D F KEG+L +A + +EM+ + + SL G DR+
Sbjct: 322 IERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 381
Query: 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGL 526
+EA +++ M+ + N VTYNTLI+ F + + E +L +M RG + +TY L
Sbjct: 382 DEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTL 441
Query: 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL 586
I A D +F++M+ G+ P+ ++ N L++GLC+ K A+ + +
Sbjct: 442 IHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 501
Query: 587 TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFL 646
P I TYN +I G+CK G +++ +LF L +G+ PD + YNT+IS ++GL ++A
Sbjct: 502 EPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADA 561
Query: 647 ILHKGVANGFVPNDAT 662
+ K +G +P+ T
Sbjct: 562 LFRKMREDGPLPDSGT 577
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FMF6 | PP444_ARATH | No assigned EC number | 0.5881 | 0.9221 | 0.8602 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_VI000146 | hypothetical protein (724 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 681 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-32 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-31 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-28 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 5e-32
Identities = 97/416 (23%), Positives = 171/416 (41%), Gaps = 53/416 (12%)
Query: 218 PTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALML 277
PT+ TF ++M ++D A +LR + + G + +Y TLI +KS +V +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 278 LEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCR 337
EM+ G ++V TF +I G + ++ +A M + PD + + L+ +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 338 TGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNI 397
+G VD A +L ++ + E I PD T
Sbjct: 555 SGAVDRAFDVLAEMKA--------------------ETHPI----------DPDHITVGA 584
Query: 398 LIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKG 457
L+ + A E+ + + YTI V+ C +
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN-SCSQ----------------- 626
Query: 458 LSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP 517
GD + AL +Y DM +GV + V ++ L+ G L +A +++ D +G
Sbjct: 627 ----KGD-WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681
Query: 518 LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEF 577
L ++Y+ L+ A NA K L L+E++ ++P+ + N LI LC + ALE
Sbjct: 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741
Query: 578 LRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633
L +M GL P+ +TY+ L+ + L+L + + +GI P+ V +
Sbjct: 742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 4e-31
Identities = 114/439 (25%), Positives = 188/439 (42%), Gaps = 44/439 (10%)
Query: 262 IHALSKSNRVSEALMLLEEMILMGC--TSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVR 319
I L R EAL L E ++ GC T T++ ++ + I + +
Sbjct: 94 IEKLVACGRHREALELFE-ILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS 152
Query: 320 GFTPDDITYG--VLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKA 377
GF PD +LMH C G + +AR L +++P N+ T+I G V +G + EA A
Sbjct: 153 GFEPDQYMMNRVLLMHVKC--GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFA 210
Query: 378 IFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNA------MAVK-GCEPNIVTY 430
+F + M G + TF +++ R + L A +K G +
Sbjct: 211 LFRE-MWEDGSDAEPRTFVVML-------RASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262
Query: 431 TILVDGFCKEGQLEKANIII-----------NEMLAKGLSLNTGDRIEEALGLYQDMLLE 479
L+D + K G +E A + N MLA G +L+ EEAL LY +M
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLA-GYALH--GYSEEALCLYYEMRDS 319
Query: 480 GVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKG 539
GV+ + T++ +I F R L A + ++ G PLD + L+ G ++
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379
Query: 540 LGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLING 599
+F+ M RK + IS N LI G + A+E MI G+ P+ VT+ ++++
Sbjct: 380 RNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 600 LCKMGCIQEALNLFDKL-QAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVP 658
G ++ +F + + I P A+ Y +I +EGL D+A+ ++ + F P
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKP 492
Query: 659 NDATWYILVRNLVKEINME 677
W L+ N+E
Sbjct: 493 TVNMWAALLTACRIHKNLE 511
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 9e-28
Identities = 94/417 (22%), Positives = 185/417 (44%), Gaps = 30/417 (7%)
Query: 265 LSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNR-IHEA---AKLVDRMLVRG 320
L + R+ + + LLE+M G + ++ CK R + EA AKL+
Sbjct: 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR------ 433
Query: 321 FTPDDITYGVLMHGLCRTGRVDEARALLNKIPS----ANVVLLNTVINGYVISGRFDEAK 376
P T+ +LM + +D A +L + A+ L T+I+ SG+ D
Sbjct: 434 -NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 377 AIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDG 436
+F++ M++ G +V TF LI G + + A M K +P+ V + L+
Sbjct: 493 EVFHE-MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 437 FCKEGQLEKANIIINEMLAKGLSLN--------------TGDRIEEALGLYQDMLLEGVT 482
+ G +++A ++ EM A+ ++ +++ A +YQ + +
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGL 542
Y +++ ++G A + +DM +G DE+ ++ L+ +AG +DK +
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671
Query: 543 FEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK 602
++ ++GIK ++S + L+ + ALE D+ L P + T N+LI LC+
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731
Query: 603 MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN 659
+ +AL + +++ G+ P+ +TY+ L+ ++ D +L + +G PN
Sbjct: 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 8e-23
Identities = 90/368 (24%), Positives = 139/368 (37%), Gaps = 64/368 (17%)
Query: 207 LFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALS 266
+F++M++ G+ V+TFG ++ +V A M P+ VV+ LI A
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 267 KSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDI 326
+S V A +L EM +D PD I
Sbjct: 554 QSGAVDRAFDVLAEM-------------------------KAETHPID--------PDHI 580
Query: 327 TYGVLMHGLCRTGRVDEARALLNKIPSANV----VLLNTVINGYVISGRFDEAKAIFYDS 382
T G LM G+VD A+ + I N+ + +N G +D A +I YD
Sbjct: 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI-YDD 639
Query: 383 MLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQ 442
M G PD F+ L+ A E++ +G + V+Y+ L+
Sbjct: 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699
Query: 443 LEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLH 502
+K AL LY+D+ + T N LI A L
Sbjct: 700 WKK-----------------------ALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736
Query: 503 EAHKLVNDMLFRG-CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNIL 561
+A +++++M G CP + ITY+ L+ A D GL L + GIKP+ + C +
Sbjct: 737 KALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795
Query: 562 INGLCRTR 569
GLC R
Sbjct: 796 T-GLCLRR 802
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 8e-19
Identities = 114/512 (22%), Positives = 190/512 (37%), Gaps = 74/512 (14%)
Query: 204 APNLFYDMLSKGISPTVYTFGVVMKA------LCMVNEVDSACSLLRDMTKHGCVPNSVV 257
A L++ ML G+ P VYTF V++ L EV + + + G + V
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA------HVVRFGFELDVDV 224
Query: 258 YQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML 317
LI K V A ++ + M C S +N +I G + E +L M
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRRDCIS----WNAMISGYFENGECLEGLELFFTMR 280
Query: 318 VRGFTPD---------------DITYGVLMHGLCRT--------------------GRVD 342
PD D G MHG G
Sbjct: 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340
Query: 343 EARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGL 402
EA + +++ + + V +I+GY +G D+A Y M PD T ++
Sbjct: 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET-YALMEQDNVSPDEITIASVLSAC 399
Query: 403 CKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAK------ 456
++L KG +V L++ + K ++KA + + + K
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459
Query: 457 ----GLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDML 512
GL LN +R EAL ++ MLL + N+VT + A R G+L ++ +L
Sbjct: 460 SIIAGLRLN--NRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVL 516
Query: 513 FRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKAN 572
G D N L+ G ++ F + +S NIL+ G K +
Sbjct: 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGS 571
Query: 573 TALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE-GIYPDAVTYNTL 631
A+E M+ G+ PD VT+ SL+ + G + + L F ++ + I P+ Y +
Sbjct: 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631
Query: 632 ISWHFKEGLFDDAFLILHKGVANGFVPNDATW 663
+ + G +A+ ++K P+ A W
Sbjct: 632 VDLLGRAGKLTEAYNFINK---MPITPDPAVW 660
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 77.4 bits (192), Expect = 5e-18
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 390 PDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCK 439
PDV T+N LI G CK+ + AL+L N M +G +PN+ TY+IL+DG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 6e-16
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 553 PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK 602
P ++ N LI+G C+ K AL+ +M RG+ P++ TY+ LI+GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 6e-16
Identities = 24/46 (52%), Positives = 35/46 (76%)
Query: 588 PDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633
PD+VTYN+LI+G CK G ++EAL LF++++ GI P+ TY+ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 1e-15
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN 532
+ VTYNTLI + ++G + EA KL N+M RG + TY+ LI LC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 3e-14
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR 567
D +TYN LI C G V++ L LF EM ++GIKP+ + +ILI+GLC+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 4e-14
Identities = 73/352 (20%), Positives = 132/352 (37%), Gaps = 47/352 (13%)
Query: 353 SANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGC--IPDVFTFNILIHGLCKQRRFGS 410
+ V L + I V GR EA +F +L GC T++ L+ +
Sbjct: 84 RKSGVSLCSQIEKLVACGRHREALELF--EILEAGCPFTLPASTYDALVEACIALKSIRC 141
Query: 411 ALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAK-GLSLNT------- 462
+ + G EP+ ++ K G L A + +EM + S T
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVD 201
Query: 463 GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKL--------VNDMLFR 514
EA L+++M +G A T+ ++ A GS +L V F
Sbjct: 202 AGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261
Query: 515 GCPL----------DE-------------ITYNGLIKALCNAGAVDKGLGLFEEMMRKGI 551
C L ++ + +N ++ G ++ L L+ EM G+
Sbjct: 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321
Query: 552 KPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALN 611
+ +I+I R A + +I G DIV +L++ K G +++A N
Sbjct: 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
Query: 612 LFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATW 663
+FD++ + + +++N LI+ + G A + + +A G PN T+
Sbjct: 382 VFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 7e-14
Identities = 91/382 (23%), Positives = 152/382 (39%), Gaps = 58/382 (15%)
Query: 294 NDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEA-----RALL 348
N + LC ++ +A KL++ M D+ Y L LC R E L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRAL 113
Query: 349 NKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIP--DVFTFNILIHGLCKQR 406
+ PS V L N +++ +V G A +F G +P D+F++N+L+ G K
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVF-------GKMPERDLFSWNVLVGGYAKAG 166
Query: 407 RFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRI 466
F AL L + M G P++ T+ + L I + LA+G ++
Sbjct: 167 YFDEALCLYHRMLWAGVRPDVYTFPCV---------LRTCGGIPD--LARGREVHA---- 211
Query: 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGL 526
++ G + N LI +++ G + A + + M R C I++N +
Sbjct: 212 --------HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAM 259
Query: 527 IKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDM--- 581
I G +GL LF M + P +I+ I L + R+M
Sbjct: 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER------LGREMHGY 313
Query: 582 -IHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGL 640
+ G D+ NSLI +G EA +F +++ + DAV++ +IS + K GL
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGL 369
Query: 641 FDDAFLILHKGVANGFVPNDAT 662
D A + P++ T
Sbjct: 370 PDKALETYALMEQDNVSPDEIT 391
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 9e-14
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 355 NVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCK 404
+VV NT+I+GY G+ +EA +F + M G P+V+T++ILI GLCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLF-NEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.3 bits (158), Expect = 2e-13
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 289 DVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCR 337
DV T+N +I G CK ++ EA KL + M RG P+ TY +L+ GLC+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 3e-13
Identities = 99/451 (21%), Positives = 187/451 (41%), Gaps = 70/451 (15%)
Query: 117 YYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDM- 175
Y L++ A K + + +V ++ G + + ++ + + G+ A RL +M
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185
Query: 176 -KSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKA----- 229
+++ S+ ++ LV ++ A LF +M G TF V+++A
Sbjct: 186 ERNLA-------SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238
Query: 230 --------------LCMVNEVDSACSLLRDMTKHG----------CVP--NSVVYQTLIH 263
+V + +C+L+ +K G +P +V + +++
Sbjct: 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLA 298
Query: 264 ALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVR-GFT 322
+ EAL L EM G + D TF+ +I ++ + E AK L+R GF
Sbjct: 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL-EHAKQAHAGLIRTGFP 357
Query: 323 PDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDS 382
D + L+ + GR+++AR + +++P N++ N +I GY GR +A +F +
Sbjct: 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF-ER 416
Query: 383 MLSVGCIPDVFTFNILIH-----GLCKQ--RRFGSALELVNAMAVKGCEPNIVTYTILVD 435
M++ G P+ TF ++ GL +Q F S E +P + Y +++
Sbjct: 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE------NHRIKPRAMHYACMIE 470
Query: 436 GFCKEGQLEKANIIINE--------MLAKGLSLNTGDRIEEALGLYQ---DMLLEGVTAN 484
+EG L++A +I M A +L T RI + L L + + L
Sbjct: 471 LLGREGLLDEAYAMIRRAPFKPTVNMWA---ALLTACRIHKNLELGRLAAEKLYGMGPEK 527
Query: 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG 515
Y L++ + G EA K+V + +G
Sbjct: 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 3e-13
Identities = 95/413 (23%), Positives = 164/413 (39%), Gaps = 50/413 (12%)
Query: 258 YQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIH---GLCKVNRIHEAAKLVD 314
+ L+ +K+ EAL L M+ G DV TF V+ G+ + R E V
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214
Query: 315 RMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDE 374
R GF D L+ + G V AR + +++P + + N +I+GY +G E
Sbjct: 215 RF---GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLE 271
Query: 375 AKAIFYDSMLSVGCIPDVFTFNILIH--GLCKQRRFGSALELVNAMAVK-GCEPNIVTYT 431
+F+ +M + PD+ T +I L R G ++ VK G ++
Sbjct: 272 GLELFF-TMRELSVDPDLMTITSVISACELLGDERLGRE---MHGYVVKTGFAVDVSVCN 327
Query: 432 ILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTL 491
L+ + G +A + + M K + V++ +
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRMETK---------------------------DAVSWTAM 360
Query: 492 IHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI 551
I + + G +A + M DEIT ++ A G +D G+ L E RKG+
Sbjct: 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420
Query: 552 KPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALN 611
+ N LI + + + ALE ++ + D++++ S+I GL EAL
Sbjct: 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALI 476
Query: 612 LFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLI----LHKGVA-NGFVPN 659
F ++ + P++VT +S + G I L G+ +GF+PN
Sbjct: 477 FFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 3e-12
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 253 PNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCK 302
P+ V Y TLI K +V EAL L EM G +V T++ +I GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 1e-11
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 23/71 (32%)
Query: 425 PNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTAN 484
P++VTY L+DG+CK+G++ EEAL L+ +M G+ N
Sbjct: 1 PDVVTYNTLIDGYCKKGKV-----------------------EEALKLFNEMKKRGIKPN 37
Query: 485 TVTYNTLIHAF 495
TY+ LI
Sbjct: 38 VYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 4e-11
Identities = 41/145 (28%), Positives = 70/145 (48%)
Query: 204 APNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIH 263
A +++ DM KG+ P F ++ ++D A +L+D K G +V Y +L+
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 264 ALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTP 323
A S + +AL L E++ + V T N +I LC+ N++ +A +++ M G P
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752
Query: 324 DDITYGVLMHGLCRTGRVDEARALL 348
+ ITY +L+ R D LL
Sbjct: 753 NTITYSILLVASERKDDADVGLDLL 777
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 8e-11
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 218 PTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSK 267
P V T+ ++ C +V+ A L +M K G PN Y LI L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 9e-11
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 5/179 (2%)
Query: 135 SVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDV 194
S+ MK++G+ E F ++ G G +A +L D + G + SY+ ++
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGA 693
Query: 195 LV-AGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVP 253
A N K A L+ D+ S + PTV T ++ ALC N++ A +L +M + G P
Sbjct: 694 CSNAKNWKK-ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752
Query: 254 NSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKL 312
N++ Y L+ A + + L LL + G ++ I GLC R +A L
Sbjct: 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL-VMCRCITGLCL-RRFEKACAL 809
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 1e-09
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 623 PDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVK 672
PD VTYNTLI + K+G ++A + ++ G PN T+ IL+ L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.5 bits (130), Expect = 1e-09
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 584 RGLTPDIVTYNSLINGLCKMGCIQEALNLFDK 615
+GL PD+VTYN+LI+GLC+ G + EA+ L D+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (129), Expect = 1e-09
Identities = 14/33 (42%), Positives = 26/33 (78%)
Query: 421 KGCEPNIVTYTILVDGFCKEGQLEKANIIINEM 453
KG +P++VTY L+DG C+ G++++A +++EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (123), Expect = 9e-09
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 387 GCIPDVFTFNILIHGLCKQRRFGSALELVNAM 418
G PDV T+N LI GLC+ R A+EL++ M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 5e-08
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 319 RGFTPDDITYGVLMHGLCRTGRVDEARALLNK 350
+G PD +TY L+ GLCR GRVDEA LL++
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 1e-07
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 514 RGCPLDEITYNGLIKALCNAGAVDKGLGLFEEM 546
+G D +TYN LI LC AG VD+ + L +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 591 VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA 625
VTYN+LI+GLCK G ++EAL LF +++ GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (114), Expect = 2e-07
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 284 MGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRM 316
G DV T+N +I GLC+ R+ EA +L+D M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 6e-07
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 480 GVTANTVTYNTLIHAFLRRGSLHEAHKLVNDM 511
G+ + VTYNTLI R G + EA +L+++M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 8e-07
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 187 SYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALC 231
+YN ++D + A LF +M +GI P VYT+ +++ LC
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 8e-07
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 591 VTYNSLINGLCKMGCIQEALNLFDKLQAEGI 621
VTYNSLI+G CK G ++EAL LF +++ +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDE 520
VTYNTLI + G + EA +L +M RG D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 393 FTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNI 427
T+N LI GLCK R ALEL M +G EP++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-06
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS 555
+TYN LI LC AG V++ L LF+EM +GI+P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 5e-06
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 250 GCVPNSVVYQTLIHALSKSNRVSEALMLLEEM 281
G P+ V Y TLI L ++ RV EA+ LL+EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 1e-05
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 549 KGIKPSSISCNILINGLCRTRKANTALEFLRDM 581
KG+KP ++ N LI+GLCR + + A+E L +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGI 551
+TYN LI C AG +++ L LF+EM KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Query: 482 TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLG 541
+++T N+ + A G L +A KL+ M P+DE Y L + AV++G
Sbjct: 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSR 107
Query: 542 LF----EEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLI 597
+ G++ N +++ R + A M R D+ ++N L+
Sbjct: 108 VCSRALSSHPSLGVRLG----NAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLV 159
Query: 598 NGLCKMGCIQEALNLFDKLQAEGIYPDAVTY 628
G K G EAL L+ ++ G+ PD T+
Sbjct: 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI 590
++ N LI+GLC+ + ALE ++M RG+ PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 292 TFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDD 325
T+N +I GLCK R+ EA +L M RG PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 428 VTYTILVDGFCKEGQLEKANIIINEMLAKGL 458
VTY L+ G+CK G+LE+A + EM KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 523 YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANT-ALEFLRDM 581
YN L++ G + + L E+M ++G+ + C+ ++A A F + +
Sbjct: 377 YNRLLRD----GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432
Query: 582 IHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLF 641
P + T+N L++ I AL + +Q G+ D Y TLIS K G
Sbjct: 433 ----RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 642 DDAFLILHKGVANGFVPNDATWYILV 667
D F + H+ V G N T+ L+
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALI 514
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 6e-05
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 620 GIYPDAVTYNTLISWHFKEGLFDDAFLILHK 650
G+ PD VTYNTLI + G D+A +L +
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 59/298 (19%), Positives = 124/298 (41%), Gaps = 24/298 (8%)
Query: 174 DMKSVYGCQP--TFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALC 231
D + V+ P T ++N +L + A L+Y+M G+S +TF ++++
Sbjct: 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
Query: 232 MVNEVDSACSLLRDMTKHGCVPNSVVYQT-LIHALSKSNRVSEALMLLEEMILMGCTSDV 290
+ ++ A + + G P +V T L+ SK R+ +A + + M ++
Sbjct: 337 RLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391
Query: 291 QTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNK 350
++N +I G R +A ++ +RM+ G P+ +T+ ++ +G ++ +
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451
Query: 351 I-------PSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLC 403
+ P A + +I G DEA A+ + P V + L+
Sbjct: 452 MSENHRIKPRA--MHYACMIELLGREGLLDEAYAMIRRAPF----KPTVNMWAALLTACR 505
Query: 404 KQRRFGSALELVNAMAVKGCEP-NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSL 460
+ L + A + G P + Y +L++ + G+ +A ++ + KGLS+
Sbjct: 506 IHKNL--ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 214 KGISPTVYTFGVVMKALCMVNEVDSACSLLRDM 246
KG+ P V T+ ++ LC VD A LL +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 256 VVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDV 290
V Y TLI L K+ RV EAL L +EM G DV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC 516
VTYN+LI + + G L EA +L +M +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 1e-04
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP 553
TYN L+ AL AG D L + EEM G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 256 VVYQTLIHALSKSNRVSEALMLLEEMILMGC 286
V Y +LI K+ ++ EAL L +EM G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 221 YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNS 255
T+ ++ LC V+ A L ++M + G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 428 VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT 462
VTY L+DG CK G++E+A + EM +G+ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 357 VLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDV 392
V NT+I+G +GR +EA +F M G PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELF-KEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 31/159 (19%), Positives = 68/159 (42%), Gaps = 7/159 (4%)
Query: 204 APNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTK-HGCVPNSVVYQTLI 262
A +F M+++G++P TF V+ A + + + M++ H P ++ Y +I
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469
Query: 263 HALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFT 322
L + + EA ++ V + ++ C++++ E +L L G
Sbjct: 470 ELLGREGLLDEAYAMIRRAPF---KPTVNMWAALLTA-CRIHKNLELGRLAAEKLY-GMG 524
Query: 323 PDDI-TYGVLMHGLCRTGRVDEARALLNKIPSANVVLLN 360
P+ + Y VL++ +GR EA ++ + + +
Sbjct: 525 PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 326 ITYGVLMHGLCRTGRVDEARALLNKIPSANVV 357
+TY L+ GLC+ GRV+EA L ++ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 485 TVTYNTLIHAFLRRGSLHEAHKLVNDM 511
TYN L+ A + G A ++ +M
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEM 27
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 393 FTFNILIHGLCKQRRFGSALELVNAMAVKGC 423
T+N LI G CK + ALEL M KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 626 VTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND 660
VTYNTLI K G ++A + + G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 681 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.83 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.71 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.62 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.58 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.48 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.45 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.4 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.4 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.36 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.34 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.33 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.32 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.32 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.32 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.29 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.28 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.27 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.25 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.19 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.18 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.16 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.16 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.15 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.06 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.04 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.03 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.03 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.93 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.93 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.9 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.89 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.86 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.83 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.82 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.79 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.79 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.74 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.68 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.65 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.65 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.64 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.62 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.55 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.55 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.55 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.51 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.5 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.49 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.48 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.47 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.45 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.44 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.43 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.43 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.41 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.41 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.36 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.36 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.33 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.26 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.19 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.1 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.09 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.06 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.0 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.96 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.93 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.86 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.85 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.84 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.83 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.81 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.8 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.79 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.79 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.78 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.77 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.75 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.73 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.73 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.72 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.7 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.69 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.68 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.67 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.65 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.64 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.63 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.63 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.62 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.61 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.6 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.58 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.58 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.55 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.55 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.54 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.54 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.54 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.53 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.53 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.52 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.49 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.48 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.44 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.44 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.43 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.43 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.39 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.35 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.3 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.26 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.25 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.24 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.23 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.22 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.13 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.07 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.06 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.05 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.03 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.01 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.95 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.92 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.91 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.86 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.86 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.77 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.68 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.67 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.63 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.52 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.48 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.46 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.4 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.4 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.39 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.31 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.3 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.2 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.16 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.15 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.11 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.08 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.06 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.79 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.77 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.67 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.66 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.58 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.52 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.46 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.44 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.36 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.33 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.33 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.3 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.23 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.11 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.07 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.04 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.01 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.99 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.97 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.8 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.78 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.67 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.59 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.48 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.45 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.42 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.3 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.02 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.96 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.96 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.81 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.75 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.72 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.7 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.64 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.48 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.48 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.33 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.23 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.17 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.12 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.08 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.01 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.86 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.68 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.63 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.59 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.48 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.45 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.18 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.94 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.67 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.29 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.25 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.94 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.89 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.79 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.72 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.69 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.65 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.6 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.35 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.28 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.91 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.89 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 89.74 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.59 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.46 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.06 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.67 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.57 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.47 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.13 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.03 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 88.02 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.87 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.8 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.46 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.42 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.39 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.97 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 86.84 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.52 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.45 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.35 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.21 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.58 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.25 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 85.08 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.62 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 84.21 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.97 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.76 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.75 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.72 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.62 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.54 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 82.97 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.96 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.91 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.77 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.52 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 82.38 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.05 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 81.61 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.56 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 81.22 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 80.78 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.78 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.74 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 80.65 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.08 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.04 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-74 Score=642.84 Aligned_cols=574 Identities=20% Similarity=0.255 Sum_probs=530.8
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 040136 84 LCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG 163 (681)
Q Consensus 84 ~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (681)
+...+...+..+.+..++..+.+ .+..++...++.++..|++.|+++.|.++|++|.+ ++..+|+.++.+|++.|
T Consensus 92 ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g 166 (857)
T PLN03077 92 LFRLCEWKRAVEEGSRVCSRALS-SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAG 166 (857)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCC
Confidence 33444556778888888887654 45567777888888888888888888888888864 35568888888888888
Q ss_pred ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 040136 164 VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLL 243 (681)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 243 (681)
++++|+++|++|. ..|+.||..+|+.++.++...++...+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|
T Consensus 167 ~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 167 YFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 8888888888888 678888888888888888888888888888888888888888888999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 244 RDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTP 323 (681)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (681)
++|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.|
T Consensus 246 ~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 246 DRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred hcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 99864 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040136 324 DDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLC 403 (681)
Q Consensus 324 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 403 (681)
|..+|+.++.+|++.|++++|.++|++|..+|..+||.++.+|.+.|++++|++ +++.|...|+.||..||+.++.+|+
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~-lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE-TYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHH-HHHHHHHhCCCCCceeHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc--------cccHHHHHHHHHH
Q 040136 404 KQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT--------GDRIEEALGLYQD 475 (681)
Q Consensus 404 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~~a~~~~~~ 475 (681)
+.|+++.|.++++.+.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+.+..... .++.++|+.+|++
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876554332 7889999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 476 MLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS 555 (681)
Q Consensus 476 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 555 (681)
|.. ++.||..+|+.++.+|++.|+.+.+.+++..+.+.|..+|..++++|+++|+++|++++|..+|+.+ .||.
T Consensus 481 m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~ 554 (857)
T PLN03077 481 MLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDV 554 (857)
T ss_pred HHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCCh
Confidence 986 5899999999999999999999999999999999999999999999999999999999999999987 5799
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQ-AEGIYPDAVTYNTLISW 634 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~ 634 (681)
.+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++++
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 56999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040136 635 HFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINME 677 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 677 (681)
|.+.|++++|.+++++|. +.||..+|..|+.+|...|+.+
T Consensus 635 l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChH
Confidence 999999999999999994 7999999999999999888765
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-72 Score=625.12 Aligned_cols=573 Identities=19% Similarity=0.237 Sum_probs=548.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040136 81 PFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYG 160 (681)
Q Consensus 81 ~~~~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (681)
...+...+...|++++|+.+|+.+. ..|++|+..+|..++..|.+.+.+..+.+++..+.+.+..++...++.|+..|+
T Consensus 54 ~n~~i~~l~~~g~~~~A~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 54 SNSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 3445666777899999999999965 467889999999999999999999999999999999998889999999999999
Q ss_pred hCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHH
Q 040136 161 RGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSAC 240 (681)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 240 (681)
+.|+.+.|.++|++|. +||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.+.
T Consensus 133 ~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 133 RFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred hCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 9999999999999999 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 241 SLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRG 320 (681)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 320 (681)
+++..|.+.|+.||+.+|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999997 5789999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 040136 321 FTPDDITYGVLMHGLCRTGRVDEARALLNKIPS----ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFN 396 (681)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 396 (681)
+.||..+|+.++.+|++.|+.+.|.+++..+.. +|..+||.|+.+|++.|++++|.+ +++.|. .||..+|+
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~-vf~~m~----~~d~~s~n 358 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK-VFSRME----TKDAVSWT 358 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH-HHhhCC----CCCeeeHH
Confidence 999999999999999999999999999998876 899999999999999999999999 888886 47889999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc------------cc
Q 040136 397 ILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT------------GD 464 (681)
Q Consensus 397 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~ 464 (681)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|..++. .+
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999988765 78
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040136 465 RIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFE 544 (681)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (681)
++++|.++|++|.+ +|..+|+++|.+|++.|+.++|+++|++|.. +++||..+|+.++.+|++.|+++.+.+++.
T Consensus 439 ~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 439 CIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred CHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 99999999999965 5889999999999999999999999999986 589999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 545 EMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 545 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 624 (681)
.+.+.|+.++..+++.++++|++.|++++|.++|+++ .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999987 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCcccc
Q 040136 625 AVTYNTLISWHFKEGLFDDAFLILHKGV-ANGFVPNDATWYILVRNLVKEINMES 678 (681)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~g~~~~ 678 (681)
..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.+++.|.+.|+.++
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 9999999999999999999999999999 67999999999999999999998765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-69 Score=587.60 Aligned_cols=520 Identities=20% Similarity=0.268 Sum_probs=490.4
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHH
Q 040136 111 CHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGI-ICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYN 189 (681)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 189 (681)
.++...|..+...+++.|++++|.++|++|.+.|+ +++...+..++..|.+.|..++|..+|+.|. .|+..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHH
Confidence 35677888888999999999999999999999985 4566677789999999999999999999998 59999999
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 040136 190 VVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSN 269 (681)
Q Consensus 190 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 269 (681)
.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 040136 270 RVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLV--RGFTPDDITYGVLMHGLCRTGRVDEARAL 347 (681)
Q Consensus 270 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 347 (681)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HhhcCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040136 348 LNKIPS----ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGC 423 (681)
Q Consensus 348 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 423 (681)
|++|.+ ++..+|+.+|.+|++.|++++|.+ +++.|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~-lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS-IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999987 677999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 424 EPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHE 503 (681)
Q Consensus 424 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 503 (681)
.|+..+|+.++.+|++.|++++|.++|++|.+.+ +.||..+|+.||.+|++.|++++
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-----------------------~~PdvvtyN~LI~gy~k~G~~ee 737 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-----------------------LRPTVSTMNALITALCEGNQLPK 737 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------------------CCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999988887654 57899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-----------
Q 040136 504 AHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR----T----------- 568 (681)
Q Consensus 504 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~----------- 568 (681)
|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+ .
T Consensus 738 Alelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~ 817 (1060)
T PLN03218 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFD 817 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999876432 1
Q ss_pred --------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 569 --------RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGL 640 (681)
Q Consensus 569 --------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 640 (681)
+..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+.+++++.+.
T Consensus 818 ~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~-- 895 (1060)
T PLN03218 818 SGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY-- 895 (1060)
T ss_pred ccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--
Confidence 2246799999999999999999999999998889999999999999998888899999999999998432
Q ss_pred hhHHHHHHHHHHHCCCCCCHH
Q 040136 641 FDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 641 ~~~A~~~~~~~~~~g~~~~~~ 661 (681)
.++|..++++|.+.|+.|+..
T Consensus 896 ~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 896 DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hHHHHHHHHHHHHcCCCCCcc
Confidence 368999999999999999874
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=566.45 Aligned_cols=512 Identities=16% Similarity=0.207 Sum_probs=480.7
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 040136 84 LCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG 163 (681)
Q Consensus 84 ~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (681)
+...+.+.|+++.|+++|+++....-.+++...+..++..|.+.|..++|..+++.|.. |+..+|+.++.+|++.|
T Consensus 376 ~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCc
Confidence 44444567999999999999876555667888888899999999999999999999975 68999999999999999
Q ss_pred ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 040136 164 VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLL 243 (681)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 243 (681)
+++.|.++|+.|. ..|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 452 ~~e~A~~lf~~M~-~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 452 DIDGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred CHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040136 244 RDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMIL--MGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGF 321 (681)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 321 (681)
+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999986 67899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 040136 322 TPDDITYGVLMHGLCRTGRVDEARALLNKIPS----ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNI 397 (681)
Q Consensus 322 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 397 (681)
.|+..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|+.++|.+ +++.|.+.|+.||..+|+.
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~-l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE-ILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999987 899999999999999999999999 9999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHH
Q 040136 398 LIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDML 477 (681)
Q Consensus 398 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 477 (681)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~--------------------- 748 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL--------------------- 748 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---------------------
Confidence 99999999999999999999999999999999999999999999999999998888775
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC-------------------
Q 040136 478 LEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN----AG------------------- 534 (681)
Q Consensus 478 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g------------------- 534 (681)
|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ ++
T Consensus 749 --Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 749 --GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred --CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc
Confidence 46789999999999999999999999999999999999999999999876432 11
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 535 AVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFD 614 (681)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (681)
..++|..+|++|++.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+++++++.+. .++|..+++
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~ 904 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLE 904 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHH
Confidence 236799999999999999999999999999989999999999999999888899999999999998543 478999999
Q ss_pred HHHHCCCCCCHH
Q 040136 615 KLQAEGIYPDAV 626 (681)
Q Consensus 615 ~~~~~~~~p~~~ 626 (681)
+|.+.|+.|+..
T Consensus 905 em~~~Gi~p~~~ 916 (1060)
T PLN03218 905 EAASLGVVPSVS 916 (1060)
T ss_pred HHHHcCCCCCcc
Confidence 999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=542.57 Aligned_cols=473 Identities=20% Similarity=0.305 Sum_probs=451.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHH
Q 040136 148 RESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVM 227 (681)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 227 (681)
+...++.++..|.+.|++++|+++|+.|....++.||..+|+.++.++.+.++.+.|.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34467888899999999999999999998445578999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIH 307 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 307 (681)
.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999964 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040136 308 EAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVG 387 (681)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (681)
.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|+++||.++.+|++.|+.++|++ +|+.|...|
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~-lf~~M~~~g 320 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC-LYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH-HHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHH
Q 040136 388 CIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIE 467 (681)
Q Consensus 388 ~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 467 (681)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|++++|.++|++|.+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~------------ 388 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR------------ 388 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999988854
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040136 468 EALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMM 547 (681)
Q Consensus 468 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (681)
||..+|++||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.
T Consensus 389 ---------------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 389 ---------------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred ---------------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999998
Q ss_pred H-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H
Q 040136 548 R-KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-A 625 (681)
Q Consensus 548 ~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~ 625 (681)
+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+ +.|+ .
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~ 528 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKL 528 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCC
Confidence 7 599999999999999999999999999999876 4789999999999999999999999999999976 4564 6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 040136 626 VTYNTLISWHFKEGLFDDAFLILHKGVANGFV 657 (681)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 657 (681)
.+|..|++.|.+.|++++|.+++++|.++|+.
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 79999999999999999999999999999874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-61 Score=524.54 Aligned_cols=507 Identities=18% Similarity=0.256 Sum_probs=444.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040136 82 FQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGR 161 (681)
Q Consensus 82 ~~~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (681)
..+...+...+++++|+++|+|+....++.|+..+|..++.+|.+.++++.+.+++..|.+.|+.|+..+++.|+..|++
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k 170 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK 170 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc
Confidence 34455566789999999999998877778899999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 040136 162 GGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACS 241 (681)
Q Consensus 162 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 241 (681)
.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+
T Consensus 171 ~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 171 CGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred CCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 999999999999998 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040136 242 LLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGF 321 (681)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 321 (681)
++..+.+.|+.||..+|+++|.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|.++|++|.+.|+
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999996 56999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040136 322 TPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHG 401 (681)
Q Consensus 322 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~ 401 (681)
.||..||+.++.+|++.|++++|.++ +..|.+.|+.||..+|+.++.+
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i--------------------------------~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQA--------------------------------HAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHH--------------------------------HHHHHHhCCCCCeeehHHHHHH
Confidence 99999999999988888888877774 5556677888999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCC
Q 040136 402 LCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGV 481 (681)
Q Consensus 402 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 481 (681)
|++.|++++|.++|++|. .||..+|+.++.+|++.|+.++|.++|++|.+. |+
T Consensus 370 y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----------------------g~ 422 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-----------------------GV 422 (697)
T ss_pred HHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CC
Confidence 999999999999999886 468889999999999999998888888877765 45
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 482 TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLF-RGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNI 560 (681)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 560 (681)
.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| +..|+..+|+.
T Consensus 423 ~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~ 499 (697)
T PLN03081 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAA 499 (697)
T ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHH
Confidence 78999999999999999999999999999976 588999999999999999999999999988765 56789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH------
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA-VTYNTLI------ 632 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~------ 632 (681)
++.+|+..|+++.|..+++++.+ ..| +..+|..|++.|++.|++++|.++++.|.+.|+.... .+|..+.
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f 577 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSF 577 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEE
Confidence 99999999999999999998875 345 4678999999999999999999999999998875332 2221110
Q ss_pred -HH---HH-hcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 633 -SW---HF-KEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 633 -~~---~~-~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
.. +- ...-++...++..+|.+.|+.||..
T Consensus 578 ~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 578 FSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 00 00 0011345566788888889988753
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=325.97 Aligned_cols=570 Identities=12% Similarity=0.044 Sum_probs=445.7
Q ss_pred cCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHH
Q 040136 89 RLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQA 168 (681)
Q Consensus 89 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 168 (681)
...|+++.|...|+.+....+ .+...+..+...+.+.|++++|...++.+.+.++ .+...+..+...+.+.|++++|
T Consensus 306 ~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQILKYAP--NSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 345667777777766655433 3445556666677777777777777777776653 3566777777777777888888
Q ss_pred HHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040136 169 TRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTK 248 (681)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 248 (681)
.++|+++. ... +.+...+..+...+...|++++|.+.|+++.+.+.. .......++..+.+.|++++|..+++.+..
T Consensus 383 ~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 383 AEYLAKAT-ELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHH-hcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 87777776 222 345566667777777777888888887777765422 234455566777788888888888888876
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 040136 249 HGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITY 328 (681)
Q Consensus 249 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (681)
.. +++..++..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++...+ +.+..++
T Consensus 460 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 536 (899)
T TIGR02917 460 KQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAI 536 (899)
T ss_pred hC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 53 5667788888888888888888888888887754 4456677778888888888888888888888764 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040136 329 GVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQ 405 (681)
Q Consensus 329 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 405 (681)
..+...+.+.|+.++|...++++.. .+...+..++..|...|++++|.. +++.+... .+.+...|..+...+...
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~-~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA-ILNEAADA-APDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHH-HHHHHHHc-CCCCHHHHHHHHHHHHHc
Confidence 8888888888999999888888755 455677788888899999999998 77777653 345677888888899999
Q ss_pred CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-----------cccHHHHHHHHH
Q 040136 406 RRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT-----------GDRIEEALGLYQ 474 (681)
Q Consensus 406 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~ 474 (681)
|++++|...++.+.+.. +.+...+..+..++.+.|++++|...++++.+....... .++.++|..+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999888763 446677888888899999999999999988876543222 678899999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 040136 475 DMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS 554 (681)
Q Consensus 475 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 554 (681)
.+....+ .+...+..+...+...|++++|.+.++.+...+ |+..++..++.++.+.|++++|...++++.+.. +.+
T Consensus 694 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~ 769 (899)
T TIGR02917 694 SLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND 769 (899)
T ss_pred HHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 8887753 467778888889999999999999999988874 444677788899999999999999999998874 347
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
...+..++..|...|+.++|.+.|+++.+.. +.+..+++.+...+...|+ .+|+.+++++.+.. +-+..++..++..
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 846 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWL 846 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 7888999999999999999999999999863 4577889999999999999 88999999998852 3346677888999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcccc
Q 040136 635 HFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINMES 678 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 678 (681)
+...|++++|.++++++++.+. .+..++..+...+.+.|+.++
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999753 388899999999999998765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=320.81 Aligned_cols=551 Identities=13% Similarity=0.057 Sum_probs=477.6
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 040136 84 LCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG 163 (681)
Q Consensus 84 ~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (681)
+..++...|+++.|+..++.+....+ .+...+..+...+.+.|++++|.++|+++.+..+ .+...+..+...+...|
T Consensus 335 la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 411 (899)
T TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDP--DDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQG 411 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCC
Confidence 44455678999999999998876543 5677888899999999999999999999998764 46778889999999999
Q ss_pred ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 040136 164 VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLL 243 (681)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 243 (681)
++++|.+.|+++. ... +........++..+.+.|++++|..+++++.... +++..++..+...+...|++++|.+.|
T Consensus 412 ~~~~A~~~~~~a~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 412 DPSEAIADLETAA-QLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred ChHHHHHHHHHHH-hhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999988 332 3344566778889999999999999999998863 446788999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 244 RDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTP 323 (681)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (681)
+++.+.. +.+...+..+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|..+++++...+ +.
T Consensus 489 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 565 (899)
T TIGR02917 489 EKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQ 565 (899)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 9998875 5567788889999999999999999999998765 5678889999999999999999999999998764 34
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040136 324 DDITYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIH 400 (681)
Q Consensus 324 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~ 400 (681)
+...+..++..|...|++++|..+++++.. .+...|..++.+|...|++++|+. .++.+.+.. +.+...+..+..
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~ 643 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS-SFKKLLALQ-PDSALALLLLAD 643 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCChHHHHHHHH
Confidence 566788899999999999999999998875 567889999999999999999999 777777643 346677888999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-----------cccHHHH
Q 040136 401 GLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT-----------GDRIEEA 469 (681)
Q Consensus 401 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~a 469 (681)
.+...|++++|...++.+.+.. +.+...+..++..+...|++++|..+++.+.+....... .++.++|
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998763 446788999999999999999999999999887644332 6899999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 470 LGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
...++.+...++ +..++..++.++.+.|++++|.+.++.+.+.. |.+..++..+...|...|++++|...|+++.+.
T Consensus 723 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 723 IQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 999999988754 44777889999999999999999999999874 778899999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 550 GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYN 629 (681)
Q Consensus 550 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 629 (681)
.. .+...++.++..+...|+ .+|+..++++.+.. +-+..++..+..++...|++++|..+++++++.+ +.+..++.
T Consensus 800 ~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~ 875 (899)
T TIGR02917 800 AP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRY 875 (899)
T ss_pred CC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHH
Confidence 53 478889999999999999 88999999999852 3356778889999999999999999999999975 34888999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 040136 630 TLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.++.++.+.|++++|.+++++|++
T Consensus 876 ~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 876 HLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhC
Confidence 999999999999999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-25 Score=254.12 Aligned_cols=554 Identities=12% Similarity=0.043 Sum_probs=370.8
Q ss_pred HHhcCCCChHHHHHHHHHhhhCCCCCCCHHH--------------HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHH
Q 040136 86 KLLRLPLDVDTSMEIFTWAGSQEGYCHTFDV--------------YYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESL 151 (681)
Q Consensus 86 ~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 151 (681)
++....|+.++|.+.++.+....|-.+.... .....+.+.+.|++++|.+.++.+.+.+++.....
T Consensus 70 ~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la 149 (1157)
T PRK11447 70 RLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLA 149 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHH
Confidence 3444678888888888887776653332211 12234467788888888888888887664322212
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCC--------------
Q 040136 152 FILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGIS-------------- 217 (681)
Q Consensus 152 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-------------- 217 (681)
...........|+.++|++.|+++.... +.+...+..+...+...|++++|+..++++......
T Consensus 150 ~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~ 227 (1157)
T PRK11447 150 VEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKD 227 (1157)
T ss_pred HHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 2122222234588888888888887331 445667777888888888888888888888654210
Q ss_pred ----CCh-hhHHH----------------------------------HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 040136 218 ----PTV-YTFGV----------------------------------VMKALCMVNEVDSACSLLRDMTKHGCVPNSVVY 258 (681)
Q Consensus 218 ----p~~-~~~~~----------------------------------ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 258 (681)
+.. ..+.. ....+...|++++|...|++..+.. +.+..++
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~ 306 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEAL 306 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 000 00110 0122345567777777777776654 4456666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 040136 259 QTLIHALSKSNRVSEALMLLEEMILMGCTS-DVQTFN------------DVIHGLCKVNRIHEAAKLVDRMLVRGFTPDD 325 (681)
Q Consensus 259 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 325 (681)
..+..++.+.|++++|+..|++..+..... ....+. .....+.+.|++++|+..+++++... +.+.
T Consensus 307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~ 385 (1157)
T PRK11447 307 GALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDS 385 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 777777777777777777777766543111 111111 12334556677777777777776652 2234
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--------CCHHH
Q 040136 326 ITYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCI--------PDVFT 394 (681)
Q Consensus 326 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------p~~~~ 394 (681)
..+..+..++...|++++|++.|+++.. .+...+..+...|. .++.++|+. +++.+...... .....
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~-~l~~l~~~~~~~~~~~~~~l~~~~ 463 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALA-FIASLSASQRRSIDDIERSLQNDR 463 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHH-HHHhCCHHHHHHHHHHHHHhhhhH
Confidence 4556666777777777777777776654 33445555555553 345666666 44433221100 01122
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-----------c
Q 040136 395 FNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT-----------G 463 (681)
Q Consensus 395 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~ 463 (681)
+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|...++++.+....... .
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 3445566778899999999999988763 335667788888999999999999999998876443221 4
Q ss_pred ccHHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 040136 464 DRIEEALGLYQDMLLEGVTANT---------VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG 534 (681)
Q Consensus 464 ~~~~~a~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 534 (681)
++.++|+..++.+......++. ..+..+...+...|+.++|.++++. .|.+...+..+...+.+.|
T Consensus 543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcC
Confidence 6677788877765433222221 1233456778899999999999872 3667778888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 535 AVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFD 614 (681)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (681)
++++|+..|+++++... .+...+..++..|...|++++|++.++...+.. +.+...+..+..++...|++++|.++++
T Consensus 618 ~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 618 DYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999743 367888999999999999999999999888642 2345667778888999999999999999
Q ss_pred HHHHCCC--CC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 615 KLQAEGI--YP---DAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 615 ~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+++...- .| +...+..+...+...|++++|.+.|++++.
T Consensus 696 ~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 696 RLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9987521 12 234666778889999999999999999974
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-23 Score=240.66 Aligned_cols=573 Identities=13% Similarity=0.020 Sum_probs=400.1
Q ss_pred HhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHH--------------
Q 040136 87 LLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLF-------------- 152 (681)
Q Consensus 87 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------- 152 (681)
+-...++++.|.+.++.+....+ .++..+..++.++.+.|+.++|.+.++++.+..+. +....
T Consensus 37 ~~~~~~~~d~a~~~l~kl~~~~p--~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 37 LGEATHREDLVRQSLYRLELIDP--NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHhhCChHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchh
Confidence 33468999999999999877655 56888888999999999999999999999998853 43332
Q ss_pred --HHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHh-HHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHH
Q 040136 153 --ILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRS-YNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKA 229 (681)
Q Consensus 153 --~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 229 (681)
..+.+.+.+.|++++|++.|+++. .. .+++... ...........|+.++|++.++++.+.. +-+...+..+...
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l-~~-~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLF-NG-APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHc-cC-CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344557889999999999999988 22 2444321 1111222234689999999999999975 2356778888999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChh---h-----------------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 040136 230 LCMVNEVDSACSLLRDMTKHGCVPNSV---V-----------------YQTLIHALSKSNRVSEALMLLEEMILMGCTSD 289 (681)
Q Consensus 230 ~~~~g~~~~A~~~~~~~~~~~~~~~~~---~-----------------~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~ 289 (681)
+...|+.++|+..++++.... ..+.. . +...+..+-.......|...+.++......|+
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~-~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSP-AGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCC-CchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 999999999999999987643 11111 1 11111111112223455555555544322333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh---HHHH----
Q 040136 290 VQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS--ANV---VLLN---- 360 (681)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~---- 360 (681)
... ......+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|++..+ ++. ..|.
T Consensus 270 ~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 270 FRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred hHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 221 234566778999999999999999863 23677889999999999999999999998776 221 1121
Q ss_pred --------HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHH
Q 040136 361 --------TVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTI 432 (681)
Q Consensus 361 --------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 432 (681)
.+...+.+.|++++|++ .++...... +.+...+..+...+...|++++|.+.|++..+.. +.+...+..
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~-~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~ 424 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAER-LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRG 424 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 23456788999999999 777777654 3456777888999999999999999999999763 334556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC--------------------CCccccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040136 433 LVDGFCKEGQLEKANIIINEMLAKGLS--------------------LNTGDRIEEALGLYQDMLLEGVTANTVTYNTLI 492 (681)
Q Consensus 433 ll~~~~~~g~~~~A~~~~~~~~~~~~~--------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 492 (681)
+...|. .++.++|..+++.+...... ....++.++|+..+++..+..+. +...+..+.
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA 502 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLA 502 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 666664 45678887777654321100 01157788888888888876543 567777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----------------------
Q 040136 493 HAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK----------------------- 549 (681)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------- 549 (681)
..|.+.|++++|...++++.+.. |.+...+..+...+...++.++|...++.+...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 88888888888888888887653 334444433333344445555554444332110
Q ss_pred ----------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 550 ----------------GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLF 613 (681)
Q Consensus 550 ----------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (681)
..+.+...+..+...+.+.|++++|++.+++.++.. +.+...+..++..+...|++++|++.+
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 012345566778888899999999999999998862 336778888999999999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCccc
Q 040136 614 DKLQAEGIYP-DAVTYNTLISWHFKEGLFDDAFLILHKGVANGF--VP---NDATWYILVRNLVKEINME 677 (681)
Q Consensus 614 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~---~~~~~~~ll~~~~~~g~~~ 677 (681)
+.+.+. .| +..++..+..++...|++++|.+++++++...- .| +...+..+...+...|+.+
T Consensus 661 ~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 661 AKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred HHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 988874 44 455667788888899999999999999987421 11 1234445556666666654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-21 Score=207.72 Aligned_cols=543 Identities=13% Similarity=0.047 Sum_probs=374.4
Q ss_pred HhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChH
Q 040136 87 LLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPG 166 (681)
Q Consensus 87 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (681)
.....|++++|+..|+.+....| .+..++..++.++...|++++|+..+++..+.++ .+...+..+. ..++.+
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La----~i~~~~ 125 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLA----AIPVEV 125 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHH----HhccCh
Confidence 34457999999999999988776 4588889999999999999999999999999875 3444444442 228999
Q ss_pred HHHHHHHHcHhhcCCCCCHHhHHHHHHH--------HHhcCCcCcHHHHHHHHHHCCCCCChhhHHHH-HHHHHhcCChh
Q 040136 167 QATRLLLDMKSVYGCQPTFRSYNVVLDV--------LVAGNCHKVAPNLFYDMLSKGISPTVYTFGVV-MKALCMVNEVD 237 (681)
Q Consensus 167 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~ 237 (681)
+|..+++++.... +-+...+..+... |.+. ++|.+.++ .......|+..+.... .+.|.+.|+++
T Consensus 126 kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 126 KSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred hHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 9999999998432 3345555555444 5555 55555554 3333334445544444 89999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 238 SACSLLRDMTKHGCVPNSVVYQTLIHALSK-SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRM 316 (681)
Q Consensus 238 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (681)
+|++++.++.+.+ +.+......+..+|.. .++ +++..+++. ..+.+...+..++..+.+.|+.++|.++++++
T Consensus 200 ~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 200 QADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 9999999999987 5556667778788887 466 777777553 23467888999999999999999999999887
Q ss_pred HHCCCC-CCcccH------------------------------HHHHHHHHhcCCHHHHHHHHhhcCC------------
Q 040136 317 LVRGFT-PDDITY------------------------------GVLMHGLCRTGRVDEARALLNKIPS------------ 353 (681)
Q Consensus 317 ~~~~~~-~~~~~~------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~------------ 353 (681)
...-.. |+..++ ..++..+.+.++++.+.++..--+.
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 353 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSV 353 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcc
Confidence 543111 222211 2235666777778777766432221
Q ss_pred --------------------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCC---h
Q 040136 354 --------------------ANVVLLNTVINGYVISGRFDEAKAIFYDSMLS-V-GCIPDVFTFNILIHGLCKQRR---F 408 (681)
Q Consensus 354 --------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~p~~~~~~~ll~~~~~~~~---~ 408 (681)
.+......+....++.|+.++|.+ +++.... . ...++......++..|.+.+. .
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAAD-LLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHH-HHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 011122222333456788888888 5554443 1 122333444466777766655 2
Q ss_pred hHHHHH----------------------HHHHHhc-CC-Cc--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 040136 409 GSALEL----------------------VNAMAVK-GC-EP--NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLN- 461 (681)
Q Consensus 409 ~~A~~~----------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~- 461 (681)
.++..+ ++..... +. ++ +...|..+..++.. ++.++|...+.+.....+...
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~ 511 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ 511 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH
Confidence 222222 1111111 11 23 45667777777766 788888887777766543321
Q ss_pred ---------ccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 040136 462 ---------TGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN 532 (681)
Q Consensus 462 ---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 532 (681)
..++.++|...++++... +|+...+..+..++.+.|+.++|...++..++.. +.+...+..+.....+
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 157788888888887554 3344456667778888899999999998888764 4444444444445556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 533 AGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNL 612 (681)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 612 (681)
.|++++|...++++++. .|+...+..+..++.+.|++++|+..+++.++.. +.+...++.+..++...|++++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 69999999999998875 4567788888888999999999999999988852 33566777888888889999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 040136 613 FDKLQAEGIYP-DAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 613 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
++++.+. .| +...+..+..++...|++++|+..++++++ +.|+.
T Consensus 666 l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 666 LERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 9998884 44 466788888889999999999999999987 45654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-21 Score=199.26 Aligned_cols=552 Identities=13% Similarity=0.066 Sum_probs=422.5
Q ss_pred HhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChH
Q 040136 87 LLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPG 166 (681)
Q Consensus 87 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (681)
++....+.+.|...|..+.++.| ++...+..-+.+....|++..|..+|..+....+...+.....+..++.+.|+.+
T Consensus 139 l~~~~~~~~~A~a~F~~Vl~~sp--~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~ 216 (1018)
T KOG2002|consen 139 LLEGDKSMDDADAQFHFVLKQSP--DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSE 216 (1018)
T ss_pred hhcCCccHHHHHHHHHHHHhhCC--cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchh
Confidence 33344557999999999988876 6666666666777789999999999999888776556667777778889999999
Q ss_pred HHHHHHHHcHhhcCCCCCHHhHHHHHHHH---Hhc---CCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHH
Q 040136 167 QATRLLLDMKSVYGCQPTFRSYNVVLDVL---VAG---NCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSAC 240 (681)
Q Consensus 167 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 240 (681)
.|+..|.+.. +.|+...++++... ... ..+..+++++...-... .-++...+.|.+.|.-.|++..++
T Consensus 217 ~a~~a~~ral-----qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 217 KALLAFERAL-----QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred hHHHHHHHHH-----hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHH
Confidence 9999999998 34444444443322 222 33566777777766654 236788899999999999999999
Q ss_pred HHHHHHHhCCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 241 SLLRDMTKHGCV--PNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSD--VQTFNDVIHGLCKVNRIHEAAKLVDRM 316 (681)
Q Consensus 241 ~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (681)
.+...+...... .-...|-.+.++|-..|++++|...|.+..... ++ +..+--+...+.+.|+++.+...|+.+
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 999988875311 123457789999999999999999999888654 34 344556788999999999999999999
Q ss_pred HHCCCCCCcccHHHHHHHHHhcC----CHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHH----HHHHh
Q 040136 317 LVRGFTPDDITYGVLMHGLCRTG----RVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFY----DSMLS 385 (681)
Q Consensus 317 ~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~----~~~~~ 385 (681)
.+. .+.+..+...|...|+..+ ..+.|..++.+... .|...|-.+...+....-+.. +. ++ +.+..
T Consensus 369 ~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~-~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 369 LKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LD-AYGNALDILES 445 (1018)
T ss_pred HHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HH-HHHHHHHHHHH
Confidence 987 2335677788888887775 56778888877766 566678888777766554443 44 33 23445
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCcCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 386 VGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK---GCEPNI------VTYTILVDGFCKEGQLEKANIIINEMLAK 456 (681)
Q Consensus 386 ~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 456 (681)
.+..+.....|.+...+...|++..|...|...... ...++. .+--.+..++-..++++.|.+.|..+.+.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 555577888999999999999999999999988765 122232 23334556667788999999999999887
Q ss_pred CCCCCc-----------cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHH
Q 040136 457 GLSLNT-----------GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG-CPLDEITYN 524 (681)
Q Consensus 457 ~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 524 (681)
.+.... .+...+|...+.+.....- .++..+..+...+.+...+..|.+-|+.+...- ..+|..+..
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 654433 4677888888888877543 366667777778889889988888776665542 236888888
Q ss_pred HHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 525 GLIKALCN------------AGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVT 592 (681)
Q Consensus 525 ~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 592 (681)
+|.+.|.+ .+..++|+++|.++++..+. |...-|.+.-+++..|++.+|..+|.+..+... -+..+
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv 682 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDV 682 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCce
Confidence 88886653 34578899999999987544 778888999999999999999999999998733 35567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 593 YNSLINGLCKMGCIQEALNLFDKLQAEGI-YPDAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
|-.+.++|..+|++-.|+++|+...+.-. .-+..+...|.+++...|.+.+|.+.+..+...
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 88999999999999999999999988722 335778899999999999999999999999874
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-19 Score=198.30 Aligned_cols=526 Identities=12% Similarity=0.022 Sum_probs=365.7
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCc
Q 040136 122 DKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCH 201 (681)
Q Consensus 122 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 201 (681)
..+...|++++|...|+++.+..+. +..++..|...|...|+.++|+..+++.. ... +.|...+..+ ..+ +++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv-~ld-P~n~~~~~~L-a~i---~~~ 124 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQL-KRH-PGDARLERSL-AAI---PVE 124 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-cccHHHHHHH-HHh---ccC
Confidence 3445569999999999999999875 58899999999999999999999999998 322 3344444443 333 899
Q ss_pred CcHHHHHHHHHHCCCCCChhhHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCChh
Q 040136 202 KVAPNLFYDMLSKGISPTVYTFGVVMKA--------LCMVNEVDSACSLLRDMTKHGCVPNSVVYQTL-IHALSKSNRVS 272 (681)
Q Consensus 202 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~ 272 (681)
++|..+++++...... +..++..+... |.+. ++|.+.++ .......|+..+.... .+.|.+.|+++
T Consensus 125 ~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 125 VKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred hhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 9999999999998532 45555555554 5444 55555555 3333323345544444 89999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhc
Q 040136 273 EALMLLEEMILMGCTSDVQTFNDVIHGLCK-VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKI 351 (681)
Q Consensus 273 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 351 (681)
+|+++++++.+.+ +.+......|...|.. .++ +++..+++. ...-+......++..|.+.|+.++|..+++++
T Consensus 200 ~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 200 QADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 9999999999987 4456667777778877 466 777777553 23357788899999999999999999999988
Q ss_pred CC-----CChHHH------------------------------HHHHHHHHhcCCHHHHHHHHHH---------------
Q 040136 352 PS-----ANVVLL------------------------------NTVINGYVISGRFDEAKAIFYD--------------- 381 (681)
Q Consensus 352 ~~-----~~~~~~------------------------------~~l~~~~~~~g~~~~a~~~~~~--------------- 381 (681)
.. +...+| -.++..+.+.++++-+.+ +..
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK-LLATLPANEMLEERYAVS 352 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH-HhcCCCcchHHHHHHhhc
Confidence 66 111111 122455666666665554 211
Q ss_pred --------------HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-C-CCcCHhhHHHHHHHHHhcCC---
Q 040136 382 --------------SMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK-G-CEPNIVTYTILVDGFCKEGQ--- 442 (681)
Q Consensus 382 --------------~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~g~--- 442 (681)
.|... .+-+......+.-...+.|+.++|.++++..... + -..+.....-++..|.+.+.
T Consensus 353 ~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred cccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 00000 0012222222233345677788888888777652 1 12234445567777777665
Q ss_pred HHHHHHH----------------------HHHHHHC-CCCCC--c------------cccHHHHHHHHHHHHhcCCCCCH
Q 040136 443 LEKANII----------------------INEMLAK-GLSLN--T------------GDRIEEALGLYQDMLLEGVTANT 485 (681)
Q Consensus 443 ~~~A~~~----------------------~~~~~~~-~~~~~--~------------~~~~~~a~~~~~~~~~~~~~~~~ 485 (681)
..++..+ +...... +..+. . .+..++|+..+.+..... |+.
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~ 509 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDA 509 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--Cch
Confidence 3333222 1111111 11111 1 345567888777776653 454
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGL 565 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (681)
.....+...+...|++++|...++++... +|+...+..+..++.+.|+.++|...++++++.+. .+...+..+....
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l 586 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQR 586 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHH
Confidence 44444555567899999999999997665 45555667778888999999999999999988642 2333344444455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHH
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 644 (681)
...|++++|...+++.++. .|+...+..+..++.+.|++++|+..++++.+. .|+ ...+..+..++...|++++|
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5669999999999999984 577888999999999999999999999999995 554 66778888899999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcccc
Q 040136 645 FLILHKGVANGFVP-NDATWYILVRNLVKEINMES 678 (681)
Q Consensus 645 ~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~ 678 (681)
+..++++++. .| +...+..+..++...|+.++
T Consensus 663 i~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 663 REMLERAHKG--LPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999984 45 46778889999999998764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-21 Score=188.11 Aligned_cols=440 Identities=17% Similarity=0.136 Sum_probs=313.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 040136 154 LIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMV 233 (681)
Q Consensus 154 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 233 (681)
.|..-.-+.|++.+|++.-..+-++. +.+....-.+-..+.+..+.+.....-...++.. +.-..+|..+.+.+-..
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 34444445566666655544433110 1111222222233444444444443333333332 12356777777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHH
Q 040136 234 NEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFND-VIHGLCKVNRIHEAAKL 312 (681)
Q Consensus 234 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~ 312 (681)
|+++.|+.+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +...+-..|++++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 77777777777777765 445677777777777777777777777777764 355443333 33334456777777777
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040136 313 VDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSAN---VVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCI 389 (681)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 389 (681)
+.+.++... -=...|..|.-.+...|+...|+..|++....| ...|-.|...|-..+.+++|+. .|...... .
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs-~Y~rAl~l--r 282 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS-CYLRALNL--R 282 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH-HHHHHHhc--C
Confidence 777766521 124567777777777788888888777776633 3467777778888888888888 44444432 3
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHH
Q 040136 390 P-DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPN-IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIE 467 (681)
Q Consensus 390 p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 467 (681)
| ....+..+...|...|.++.|+..+++.++. .|+ ...|+.|..++-..|+..+|...+++.+...
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~---------- 350 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC---------- 350 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC----------
Confidence 4 3566777777888999999999999999886 444 6789999999999999999999998888763
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040136 468 EALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMM 547 (681)
Q Consensus 468 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (681)
+......+.|...|...|.+++|..+|....+. .|.-....+.|...|-+.|++++|+..|++++
T Consensus 351 --------------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 351 --------------PNHADAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred --------------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 225677889999999999999999999999886 34456788899999999999999999999999
Q ss_pred HCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 040136 548 RKGIKPS-SISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD- 624 (681)
Q Consensus 548 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 624 (681)
+ +.|+ ...|+.+...|-..|+...|.+.+.+.+. +.|. ....+.|...|..+|++.+|++-+++..+ ++||
T Consensus 416 r--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 416 R--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred h--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 8 5666 47899999999999999999999999998 4554 46788999999999999999999999998 6887
Q ss_pred HHHHHHHHHHHH
Q 040136 625 AVTYNTLISWHF 636 (681)
Q Consensus 625 ~~~~~~l~~~~~ 636 (681)
...|..++.++-
T Consensus 490 pdA~cNllh~lq 501 (966)
T KOG4626|consen 490 PDAYCNLLHCLQ 501 (966)
T ss_pred chhhhHHHHHHH
Confidence 445666665543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-20 Score=181.62 Aligned_cols=377 Identities=15% Similarity=0.136 Sum_probs=219.3
Q ss_pred HhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH-HHHHHH
Q 040136 186 RSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVY-QTLIHA 264 (681)
Q Consensus 186 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~ 264 (681)
.+|.-+...+-..|++++|+.+++.+++.... ....|..+..++...|+.+.|.+.|.+..+.+ |+.... +.+...
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnL 193 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHH
Confidence 34444444444445555555555444443211 23444444444444455555554444444432 222221 222223
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCCHHH
Q 040136 265 LSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD-DITYGVLMHGLCRTGRVDE 343 (681)
Q Consensus 265 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 343 (681)
+-..|+.++|...+.+..+.. +--...|+.|...+-.+|+...|++.|++.++. .|+ ...|-.|...|...+.+++
T Consensus 194 lka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 333444555544444444321 112334444444444455555555555554433 222 2234444455555555555
Q ss_pred HHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 344 ARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPD-VFTFNILIHGLCKQRRFGSALELVNAMA 419 (681)
Q Consensus 344 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 419 (681)
|...|.+... ...+++..+...|...|..+-|+. .|+...+. .|+ ...|+.+..++-..|++.+|.+.+.+.+
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~-~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAID-TYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHH-HHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 5555444333 223344444455555555555555 44444433 233 4567778888888888888888887777
Q ss_pred hcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 040136 420 VKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRG 499 (681)
Q Consensus 420 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 499 (681)
... +.-....+.|...|...|.++.|..+|....+-. +--....+.|...|-+.|
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~------------------------p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF------------------------PEFAAAHNNLASIYKQQG 402 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC------------------------hhhhhhhhhHHHHHHhcc
Confidence 652 2235567777888888888888877777666542 112355677888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 500 SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS-SISCNILINGLCRTRKANTALEFL 578 (681)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 578 (681)
++++|+..|++.+... |.-...|+.+...|-..|+++.|.+.+.+++.. .|. ....+.|...|...|+..+|++-+
T Consensus 403 nl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 403 NLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred cHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 8888888888888762 445667888888888889999999988888875 343 467788888888999999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHH
Q 040136 579 RDMIHRGLTPDI-VTYNSLINGLC 601 (681)
Q Consensus 579 ~~~~~~~~~p~~-~~~~~l~~~~~ 601 (681)
++.+. ++||. ..|..++.++-
T Consensus 480 ~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 480 RTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHc--cCCCCchhhhHHHHHHH
Confidence 88887 45653 44555555443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-19 Score=188.86 Aligned_cols=426 Identities=12% Similarity=0.046 Sum_probs=253.6
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 040136 189 NVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKS 268 (681)
Q Consensus 189 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 268 (681)
......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|.+.++...+.+ +.+..+|..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 34455566677777777777776654 3555666667777777777777777777777654 44556667777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 040136 269 NRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALL 348 (681)
Q Consensus 269 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 348 (681)
|++++|+.-|......+. .+......++..+.. ..+........+.. +++...+..+.. |......+.+..-+
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 777777766665544321 111111111111111 12222222222221 112222222222 21111111111111
Q ss_pred hhcCCCCh---HHHHHHHHH---HHhcCCHHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040136 349 NKIPSANV---VLLNTVING---YVISGRFDEAKAIFYDSMLSVG-CIP-DVFTFNILIHGLCKQRRFGSALELVNAMAV 420 (681)
Q Consensus 349 ~~~~~~~~---~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~-~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 420 (681)
......+. ..+..+... ....+++++|.+ .++.....+ ..| ....+..+...+...|++++|...+++..+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~-~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAAR-AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHH-HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111111 111111111 122366777777 666665543 222 345566667777778888888888888776
Q ss_pred cCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 040136 421 KGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGS 500 (681)
Q Consensus 421 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 500 (681)
.. +.....|..+...+...|++++|...|+++++.. +.+...|..+...+...|+
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------------------------p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN------------------------SEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHcCC
Confidence 52 2235567777777788888888888887776653 2256677777888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRD 580 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (681)
+++|...|++.++.. |.+...+..+..++.+.|++++|+..|+++++.. +.+...++.+...+...|++++|++.|++
T Consensus 415 ~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 415 FAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888888888887763 5566777777788888888888888888887753 23567777788888888888888888888
Q ss_pred HHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 581 MIHRGLTPDI------VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 581 ~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.++.....+. ..++..+..+...|++++|.++++++.+. .|+ ...+..++..+...|++++|.+.|+++.+
T Consensus 493 Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 493 AIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7764211111 11122222333468888888888887774 344 44677788888888888888888888876
Q ss_pred C
Q 040136 654 N 654 (681)
Q Consensus 654 ~ 654 (681)
.
T Consensus 571 l 571 (615)
T TIGR00990 571 L 571 (615)
T ss_pred H
Confidence 3
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-18 Score=175.32 Aligned_cols=570 Identities=15% Similarity=0.068 Sum_probs=404.3
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHc
Q 040136 96 TSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDM 175 (681)
Q Consensus 96 ~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 175 (681)
.|.-+|+.+..-.-..+....+...........+.+.|.+.|..+.+..++ +.-.+..-.......|++..|+.+|..+
T Consensus 112 ~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~a 190 (1018)
T KOG2002|consen 112 KATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKA 190 (1018)
T ss_pred HHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 444555544333222333333333332222223358999999999988753 4444444444455678999999999995
Q ss_pred Hh-hcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHhCCC
Q 040136 176 KS-VYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMV---NEVDSACSLLRDMTKHGC 251 (681)
Q Consensus 176 ~~-~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~~ 251 (681)
.. ...+++|+.. .+...+++.|+.+.|+..|.+.++.+. -++.++..|.-.-... ..+..+..++...-..+
T Consensus 191 l~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n- 266 (1018)
T KOG2002|consen 191 LRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN- 266 (1018)
T ss_pred HhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-
Confidence 41 3444566542 333566799999999999999999753 2344444443333233 34556777777766654
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 040136 252 VPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGC--TSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYG 329 (681)
Q Consensus 252 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (681)
+-|+.+.+.|.+.|...|++..+..+...+..... ..-...|-.+.+++...|++++|..+|.+..+....--...+.
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 56889999999999999999999999999886431 1223457788999999999999999999888763221133455
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 040136 330 VLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISG----RFDEAKAIFYDSMLSVGCIPDVFTFNILIHGL 402 (681)
Q Consensus 330 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~ 402 (681)
-+.+.|.+.|+++.+...|+++.. .+..+...|...|...+ ..+.|.. +.....+.. +.|...|-.+...+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~-~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN-VLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH-HHHHHHhcc-cccHHHHHHHHHHH
Confidence 688999999999999999999877 45667777788887775 4566666 444444332 44777787777666
Q ss_pred HhcCChhHHHHHHHHHH----hcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCCc-------------
Q 040136 403 CKQRRFGSALELVNAMA----VKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGL---SLNT------------- 462 (681)
Q Consensus 403 ~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~------------- 462 (681)
....-+ .++..|.... ..+..+.+...|.+...+...|+++.|...|......-. ..+.
T Consensus 425 e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 654443 3366665543 445567788999999999999999999999999877611 1111
Q ss_pred -----cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 040136 463 -----GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVD 537 (681)
Q Consensus 463 -----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 537 (681)
.++.+.|.+.|..+....+. =+..|..++-.-...+...+|...++...... ..++..+..++..+.+...+.
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhc
Confidence 45667777888888876422 22333333322233467889999999988764 567778888888999988999
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 538 KGLGLFEEMMRK-GIKPSSISCNILINGLCRT------------RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG 604 (681)
Q Consensus 538 ~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (681)
.|..-|..+.+. ...+|..+.-.|.+.|... +..++|+++|.+.+... +-|...-|.+.-+++..|
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc
Confidence 999888877765 2236777777777766542 45788999999998863 447778888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCccc
Q 040136 605 CIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANG-FVPNDATWYILVRNLVKEINME 677 (681)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~ 677 (681)
++.+|..+|.+..+.. .-+..+|..+..+|...|+|-.|.+.|+...+.- -..+..+...|.+++++.|...
T Consensus 661 ~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred CchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 9999999999999873 3356788899999999999999999999999763 3446788889999999988743
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=190.39 Aligned_cols=278 Identities=18% Similarity=0.153 Sum_probs=209.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHH
Q 040136 358 LLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPD---VFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILV 434 (681)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 434 (681)
++..+...+...|++++|.. +++.+...+..++ ...+..+...|.+.|+++.|..+|+++.+.. +.+..++..++
T Consensus 71 ~~~~la~~~~~~g~~~~A~~-~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la 148 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIR-IHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLL 148 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 34444444444555555555 4444444322111 2456677788888888888888888887652 44667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040136 435 DGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR 514 (681)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (681)
..+.+.|++++|...++.+.+.+..... ......+..+...+.+.|++++|...++++.+.
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 149 EIYQQEKDWQKAIDVAERLEKLGGDSLR-------------------VEIAHFYCELAQQALARGDLDAARALLKKALAA 209 (389)
T ss_pred HHHHHhchHHHHHHHHHHHHHhcCCcch-------------------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence 8888888888888888887765321100 001224566777888999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 515 GCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYN 594 (681)
Q Consensus 515 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 594 (681)
. +.+...+..+...+.+.|++++|..+|+++.+.+......+++.++.+|...|++++|.+.++++.+. .|+...+.
T Consensus 210 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~ 286 (389)
T PRK11788 210 D-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLL 286 (389)
T ss_pred C-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHH
Confidence 4 55677888888999999999999999999998643333467888999999999999999999999885 56766778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHH
Q 040136 595 SLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFK---EGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
.++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|+++++.|++.
T Consensus 287 ~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 287 ALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999999999884 7898889888887764 568999999999999988777765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-17 Score=179.54 Aligned_cols=426 Identities=12% Similarity=-0.025 Sum_probs=281.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040136 152 FILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALC 231 (681)
Q Consensus 152 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 231 (681)
+......|.+.|++++|+..|++... ..|+...|..+..+|.+.|++++|+..+...++.+. .+...+..+..++.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 44566677788888888888887762 256677777777788888888888888888877642 24567777788888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 232 MVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAK 311 (681)
Q Consensus 232 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 311 (681)
..|++++|...|..+...+- .+......++..+.. ..+.....+..+.. +++...+..+.. +...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 88888888877766655431 111111112211111 12222222222221 122222222211 211111111111
Q ss_pred HHHHHHHCCCCCC-cccHHHHHHHH---HhcCCHHHHHHHHhhcCC------CChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 312 LVDRMLVRGFTPD-DITYGVLMHGL---CRTGRVDEARALLNKIPS------ANVVLLNTVINGYVISGRFDEAKAIFYD 381 (681)
Q Consensus 312 ~~~~~~~~~~~~~-~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 381 (681)
-+....+ ..++ ...+..+...+ ...+++++|.+.|++... .....|+.+...+...|++++|+. .++
T Consensus 279 ~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~-~~~ 355 (615)
T TIGR00990 279 GLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALA-DLS 355 (615)
T ss_pred hhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH-HHH
Confidence 1111111 1111 11111111111 234677888888877654 234467777888888899999988 666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 382 SMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLN 461 (681)
Q Consensus 382 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 461 (681)
...... +-+...|..+...+...|++++|...++...+.. +.+..+|..+...+...|++++|...|++.++..
T Consensus 356 kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~---- 429 (615)
T TIGR00990 356 KSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD---- 429 (615)
T ss_pred HHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Confidence 666542 2245677888888899999999999999988763 4467788889999999999999999999888763
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040136 462 TGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLG 541 (681)
Q Consensus 462 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 541 (681)
+.+...+..+..++.+.|++++|+..+++.++. .|.+...++.+...+...|++++|+.
T Consensus 430 --------------------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 430 --------------------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred --------------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 235677788888999999999999999998876 36678889999999999999999999
Q ss_pred HHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 542 LFEEMMRKGIKPSSI------SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDK 615 (681)
Q Consensus 542 ~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (681)
.|+++++.....+.. .++..+..+...|++++|.+++++.++.. +.+...+..+..++.+.|++++|+..|++
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999998863221111 12222233445699999999999988753 23456788899999999999999999999
Q ss_pred HHHC
Q 040136 616 LQAE 619 (681)
Q Consensus 616 ~~~~ 619 (681)
+.+.
T Consensus 568 A~~l 571 (615)
T TIGR00990 568 AAEL 571 (615)
T ss_pred HHHH
Confidence 9875
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-19 Score=182.51 Aligned_cols=301 Identities=15% Similarity=0.125 Sum_probs=176.6
Q ss_pred HHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCC
Q 040136 194 VLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPN---SVVYQTLIHALSKSNR 270 (681)
Q Consensus 194 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~ 270 (681)
.+...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34455666666666666666531 2344566666666677777777777766665431111 2345666677777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHHH
Q 040136 271 VSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDD----ITYGVLMHGLCRTGRVDEARA 346 (681)
Q Consensus 271 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 346 (681)
+++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~------------ 189 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ------------ 189 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH------------
Confidence 777777777776542 345566677777777777777777777777654322111 012223333
Q ss_pred HHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC
Q 040136 347 LLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPN 426 (681)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 426 (681)
+.+.|+.++|.. .++.+.+.. +.+...+..+...+.+.|++++|.++++++.+.+....
T Consensus 190 -------------------~~~~~~~~~A~~-~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 190 -------------------ALARGDLDAARA-LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred -------------------HHhCCCHHHHHH-HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 334444444444 333333322 12344555556666666666666666666665421212
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 427 IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 427 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
..++..++.+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|..
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-------------------------~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE-------------------------YPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------CCCchHHHHHHHHHHHhCCHHHHHH
Confidence 345566666777777777777777666554 2344445666677777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 507 LVNDMLFRGCPLDEITYNGLIKALCN---AGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
+++++.+. .|+...++.++..+.. .|+.+++..+++++.++++.|++.
T Consensus 304 ~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 304 LLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77776665 4566666666666554 446777777777777665555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-17 Score=179.06 Aligned_cols=360 Identities=13% Similarity=0.071 Sum_probs=187.1
Q ss_pred HHhcCCcCcHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 040136 195 LVAGNCHKVAPNLFYDMLSKG--ISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVS 272 (681)
Q Consensus 195 ~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 272 (681)
+.++.+++...-+|....+.. -.-+..-...++..+.+.|+.++|..+++...... +-+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 344555555554444433220 01122233344555556666666666666665543 333444445555555566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcC
Q 040136 273 EALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIP 352 (681)
Q Consensus 273 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 352 (681)
+|...++++.... +.+...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...+++
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~-- 169 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLART-- 169 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHH--
Confidence 6666666666543 3344555555566666666666666666665431 11233444455555555555555554443
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHH
Q 040136 353 SANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTI 432 (681)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 432 (681)
+...... +...+..+ ..+...|++++|...++.+......++...+..
T Consensus 170 ------------------------------~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 217 (656)
T PRK15174 170 ------------------------------QAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGL 217 (656)
T ss_pred ------------------------------HHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 3322211 12222222 234555666666666655554422222333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHH
Q 040136 433 LVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHE----AHKLV 508 (681)
Q Consensus 433 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~ 508 (681)
+...+.+.|++++|...++++.... +.+...+..+...+...|++++ |...+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~------------------------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARG------------------------LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC------------------------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 4445555666666666655555432 1244555556666666666654 56666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 509 NDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP 588 (681)
Q Consensus 509 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 588 (681)
+++.+.. |.+..++..+...+...|++++|...++++.+.... +...+..+..++...|++++|++.++++.+. .|
T Consensus 274 ~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P 349 (656)
T PRK15174 274 RHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KG 349 (656)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cc
Confidence 6666552 445556666666666666666666666666654322 3444555666666666666666666666653 23
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 589 DIV-TYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 589 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
+.. .+..+..++...|+.++|+..|+++.+.
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 332 2223345556666666666666666653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-17 Score=174.96 Aligned_cols=358 Identities=13% Similarity=0.045 Sum_probs=249.7
Q ss_pred HHhCCChHHHHHHHHHcHhhcCCCC-CHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh
Q 040136 159 YGRGGVPGQATRLLLDMKSVYGCQP-TFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVD 237 (681)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 237 (681)
+.++.+++..--+|....+....+. +......++..+.+.|++++|..+++..+..... +......++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 3466666665556655543221111 2233455677888999999999999999987544 4455666667777899999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 238 SACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML 317 (681)
Q Consensus 238 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (681)
+|...++++.... |.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999999986 6667889999999999999999999999999863 4567788889999999999999999999887
Q ss_pred HCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH
Q 040136 318 VRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSA----NVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVF 393 (681)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 393 (681)
..... +...+..+ ..+...|++++|...++.+... +...+..+...+...|++++|+. .++...... +.+..
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~-~~~~al~~~-p~~~~ 247 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ-TGESALARG-LDGAA 247 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH-HHHHHHhcC-CCCHH
Confidence 65332 22233333 3477888999998888776542 22334445566777777777777 556555543 23455
Q ss_pred HHHHHHHHHHhcCChhH----HHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHH
Q 040136 394 TFNILIHGLCKQRRFGS----ALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEA 469 (681)
Q Consensus 394 ~~~~ll~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a 469 (681)
.+..+...+...|++++ |...++...+.. +.+...+..+...+.+.|++++|...++++....
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~------------ 314 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH------------ 314 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------
Confidence 66667777777777764 677777776652 3355667777777777777777777777766642
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 470 LGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
+.+...+..+..++.+.|++++|...++.+...+ |.+...+..+..++...|+.++|...|+++.+.
T Consensus 315 ------------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 315 ------------PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1245556666777777777777777777776652 223333444456667777777777777777765
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-16 Score=172.64 Aligned_cols=411 Identities=13% Similarity=0.048 Sum_probs=178.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHH
Q 040136 148 RESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVM 227 (681)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 227 (681)
++....-.+......|+.++|++++.+... .. +.+...+..+...+...|++++|.+++++.++.. +.+...+..+.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~-~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRV-HM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 444444445555555555555555555441 11 2333344555555555555555555555554442 11233344444
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIH 307 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 307 (681)
.++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 44555555555555555554442 33333 4444455555555555555555555432 223333333444444445555
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHH-----HhcCCH---HHHHHHH
Q 040136 308 EAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGY-----VISGRF---DEAKAIF 379 (681)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~---~~a~~~~ 379 (681)
.|++.++.+.. .|+. ..-+ +. .....++..+ ...+++ ++|++ .
T Consensus 168 ~Al~~l~~~~~---~p~~---~~~l-------~~---------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~-~ 218 (765)
T PRK10049 168 PALGAIDDANL---TPAE---KRDL-------EA---------------DAAAELVRLSFMPTRSEKERYAIADRALA-Q 218 (765)
T ss_pred HHHHHHHhCCC---CHHH---HHHH-------HH---------------HHHHHHHHhhcccccChhHHHHHHHHHHH-H
Confidence 55544443332 1110 0000 00 0000111111 111122 44454 4
Q ss_pred HHHHHhC-CCCCCHH-HH----HHHHHHHHhcCChhHHHHHHHHHHhcCCC-cCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 380 YDSMLSV-GCIPDVF-TF----NILIHGLCKQRRFGSALELVNAMAVKGCE-PNIVTYTILVDGFCKEGQLEKANIIINE 452 (681)
Q Consensus 380 ~~~~~~~-~~~p~~~-~~----~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 452 (681)
++.+.+. ...|+.. .+ ...+..+...|++++|...|+.+.+.+.+ |+. ....+...|...|++++|...|++
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4444422 1122211 11 01122344556666666666666655321 211 111234456666666666666666
Q ss_pred HHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------------CC-
Q 040136 453 MLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP------------LD- 519 (681)
Q Consensus 453 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~- 519 (681)
+....... ..........+..++...|++++|.++++.+.... | |+
T Consensus 298 ~l~~~p~~--------------------~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 298 LFYHPETI--------------------ADLSDEELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYGSPTSIPND 356 (765)
T ss_pred HhhcCCCC--------------------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecCCCCCCCCc
Confidence 55432100 00012233444445566666666666666655441 1 11
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 040136 520 --EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSL 596 (681)
Q Consensus 520 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 596 (681)
...+..+...+...|+.++|+..++++..... .+...+..++..+...|++++|++.+++.++. .|+ ...+...
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~ 433 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQ 433 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHH
Confidence 11223334444455555555555555544321 13444445555555555555555555555542 232 3333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 040136 597 INGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+..+...|++++|+.+++++++
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 4444455555555555555554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-16 Score=171.73 Aligned_cols=431 Identities=11% Similarity=0.050 Sum_probs=301.5
Q ss_pred CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 040136 182 QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTL 261 (681)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 261 (681)
+.++.-..-.+.+....|+.++|++++.+..... +.+...+..+...+.+.|++++|.+++++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444445566777788889999998888887632 3345568888888888899999999999888764 5556777788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCH
Q 040136 262 IHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRV 341 (681)
Q Consensus 262 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 341 (681)
+.++...|++++|...++++.+.. +.+.. +..+...+...|+.++|+..++++.+.... +...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 888888899999999998888763 44555 777888888889999999999888876322 444556677777778888
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHH
Q 040136 342 DEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRF---GSALELVNAM 418 (681)
Q Consensus 342 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~---~~A~~~~~~~ 418 (681)
+.|+..++++.. ++.....+ ....+.. ..+ ..+.......+++ ++|+..++.+
T Consensus 167 e~Al~~l~~~~~-~p~~~~~l--------~~~~~~~-~~r--------------~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRDL--------EADAAAE-LVR--------------LSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHH--------HHHHHHH-HHH--------------hhcccccChhHHHHHHHHHHHHHHHH
Confidence 888887776655 22100000 0000000 000 0000111122233 6788888888
Q ss_pred Hhc-CCCcCHh-hH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040136 419 AVK-GCEPNIV-TY----TILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLI 492 (681)
Q Consensus 419 ~~~-~~~~~~~-~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 492 (681)
.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. .|+. ....+.
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~----------------------~P~~-a~~~la 279 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI----------------------IPPW-AQRWVA 279 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC----------------------CCHH-HHHHHH
Confidence 754 1122221 11 11133445678889988888887765311 1221 122256
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCC---
Q 040136 493 HAFLRRGSLHEAHKLVNDMLFRGCPLD----EITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-----------KPS--- 554 (681)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~--- 554 (681)
.+|...|++++|+..|+++.+.. +.+ ......+..++...|++++|..+++.+.+... .|+
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 78999999999999999987653 212 34566677788999999999999999987531 123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLIS 633 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 633 (681)
...+..++..+...|+.++|++.++++... .+.+...+..+...+...|++++|++.++++.+. .|+ ...+..++.
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~ 435 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHH
Confidence 234567788899999999999999999886 3446788889999999999999999999999985 566 566677888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 634 WHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNL 670 (681)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 670 (681)
.+...|++++|.++++++++ ..|+......+-..+
T Consensus 436 ~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 89999999999999999998 467766655554444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-15 Score=160.31 Aligned_cols=445 Identities=11% Similarity=0.044 Sum_probs=254.0
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHh---HHHHHHHHHhcC
Q 040136 123 KLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRS---YNVVLDVLVAGN 199 (681)
Q Consensus 123 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~ 199 (681)
...+.|++..|...|+++.+..+...+.++ .++..+...|+.++|+..+++.. .|+... ...+...+...|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHHHcC
Confidence 344555555555555555555432111222 44455555555555555555554 222111 111233444455
Q ss_pred CcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 040136 200 CHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLE 279 (681)
Q Consensus 200 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 279 (681)
++++|+++|+++++.... +...+..++..+...++.++|++.++.+.+.. |+...+..++..+...++..+|++.++
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 555555555555554322 23344444455555555555555555555442 333333333333333344434555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH------HHHHHHH---H--hcC---CHHHHH
Q 040136 280 EMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITY------GVLMHGL---C--RTG---RVDEAR 345 (681)
Q Consensus 280 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~g---~~~~A~ 345 (681)
++.+.. +.+...+..++.++.+.|-...|.++..+-... +.+....+ ..+++.- . ... -.+.|+
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 555543 333444455555555555555555444331100 00000000 0000000 0 001 123344
Q ss_pred HHHhhcCC-----CCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040136 346 ALLNKIPS-----ANV-----VLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELV 415 (681)
Q Consensus 346 ~~~~~~~~-----~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~ 415 (681)
.-++.+.. |.. ....-.+-++...|++.++++ -++.+...+.+....+-..+..+|...++.++|..++
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~-~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIK-EYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHH-HHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 44444332 211 112234557788899999999 8999998887656667888999999999999999999
Q ss_pred HHHHhcC-----CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCccccHHHHHHHHHHHHhcCCCCCHH-HH
Q 040136 416 NAMAVKG-----CEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLS-LNTGDRIEEALGLYQDMLLEGVTANTV-TY 488 (681)
Q Consensus 416 ~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~ 488 (681)
+.+.... .+++......|.-+|...+++++|..+++.+.+..+. ...-+. ....+.||-. .+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~-----------~~~~pn~d~~~~~ 419 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL-----------PGKEPNDDWIEGQ 419 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC-----------CCCCCCccHHHHH
Confidence 9987642 1224444578888999999999999999999874220 000000 0011122322 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT 568 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (681)
..++..+...|+..+|++.++++... .|-|......+.+.+...|.+.+|+..++.+.... +-+..+....+.++...
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhh
Confidence 44566778889999999999998777 37788888999999999999999999997776653 22556677788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 569 RKANTALEFLRDMIHRGLTPDIVTYN 594 (681)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~p~~~~~~ 594 (681)
|++.+|..+.+...+. .|+.....
T Consensus 498 ~e~~~A~~~~~~l~~~--~Pe~~~~~ 521 (822)
T PRK14574 498 QEWHQMELLTDDVISR--SPEDIPSQ 521 (822)
T ss_pred hhHHHHHHHHHHHHhh--CCCchhHH
Confidence 9999999999888874 45544333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-15 Score=159.15 Aligned_cols=440 Identities=13% Similarity=0.058 Sum_probs=307.5
Q ss_pred HHHHHhCCChHHHHHHHHHcHhhcCCCCCH--HhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 040136 156 MKYYGRGGVPGQATRLLLDMKSVYGCQPTF--RSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMV 233 (681)
Q Consensus 156 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 233 (681)
+-...+.|+++.|+..|+++.+. .|+. ..+ .++..+...|+.++|+..+++..... .........+...+...
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHc
Confidence 33455999999999999999832 3442 233 88888889999999999999988321 11223333335688888
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 234 NEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLV 313 (681)
Q Consensus 234 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 313 (681)
|++++|.++|+++.+.. +.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999986 566788888889999999999999999999876 466666655555555567776799999
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC-CChHHHHH----HHHHHHh---------cCC---HHHHH
Q 040136 314 DRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS-ANVVLLNT----VINGYVI---------SGR---FDEAK 376 (681)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~----l~~~~~~---------~g~---~~~a~ 376 (681)
+++.+.. +-+...+..+..++.+.|-...|.++..+-+. -+...+.- .+.-.++ .++ .+.|+
T Consensus 193 ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 9999873 33567778889999999999999999888765 11111111 0111111 112 23344
Q ss_pred HHHHHHHHh-CCCCCCH-HH----HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 040136 377 AIFYDSMLS-VGCIPDV-FT----FNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIII 450 (681)
Q Consensus 377 ~~~~~~~~~-~~~~p~~-~~----~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 450 (681)
. -++.+.. .+..|.. .. ..-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|..++
T Consensus 272 a-~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 272 A-DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred H-HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4 3333332 2222322 11 12335567788889999999999988776655667788888999999999999888
Q ss_pred HHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CC-
Q 040136 451 NEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC-----------PL- 518 (681)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~- 518 (681)
.++....... ....++......|..+|...+++++|..+++.+.+... .|
T Consensus 351 ~~~~~~~~~~------------------~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 351 SSLYYSDGKT------------------FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHhhccccc------------------cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 8886642110 00122344456788888889999999999988887411 11
Q ss_pred -CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 040136 519 -DE-ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNS 595 (681)
Q Consensus 519 -~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 595 (681)
|- ..+..++..+...|++.+|++.++++....+ -|......+.+.+...|.+.+|++.++..... .| +..+...
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~ 489 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERA 489 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHH
Confidence 11 2233455667778888888888888877643 37777888888888888888888888666653 44 4456667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040136 596 LINGLCKMGCIQEALNLFDKLQAEGIYPDAVTY 628 (681)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 628 (681)
.+.++...|++.+|..+.+.+.+. .|+....
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~ 520 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISR--SPEDIPS 520 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--CCCchhH
Confidence 777788888888888888888874 5665433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-14 Score=138.39 Aligned_cols=551 Identities=11% Similarity=0.054 Sum_probs=403.9
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH-
Q 040136 92 LDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATR- 170 (681)
Q Consensus 92 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~- 170 (681)
+|...|..++..+...+|-.|....-. .+.--..|.+..|..++..--+.- +-++++|...+ +...++.|..
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAs--ArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIAS--ARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHH--HHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHHH----hcCChHHHHHH
Confidence 567788888888776666444443333 333345566666666555443332 22444443332 2222222322
Q ss_pred ------------------------------HHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCh
Q 040136 171 ------------------------------LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTV 220 (681)
Q Consensus 171 ------------------------------~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 220 (681)
++++..+ ..+.++..|... +...+.+.|.-++.+..+. + |.
T Consensus 338 vA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe--~iP~sv~LWKaA----VelE~~~darilL~rAvec-c-p~- 408 (913)
T KOG0495|consen 338 VANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALE--HIPRSVRLWKAA----VELEEPEDARILLERAVEC-C-PQ- 408 (913)
T ss_pred HHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHH--hCCchHHHHHHH----HhccChHHHHHHHHHHHHh-c-cc-
Confidence 3333331 112333334332 3344555677777777664 1 22
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHH
Q 040136 221 YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMI----LMGCTSDVQTFNDV 296 (681)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~----~~~~~~~~~~~~~l 296 (681)
-.-|.-++.+...++.|..++....+. ++.+...|.+-...--.+|+.+...+++.+-. ..|+..+...|..=
T Consensus 409 --s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 409 --SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 223445667778899999999999876 67788899888888888999999988877654 57888899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCC
Q 040136 297 IHGLCKVNRIHEAAKLVDRMLVRGFTPD--DITYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGR 371 (681)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 371 (681)
...|-..|..-.+..+....+..|+.-. ..+|..-...|.+.+.++-|+.+|....+ .+...|...+..--..|.
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCc
Confidence 9999999999999999999988877633 46888889999999999999999998877 556778888887778899
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 040136 372 FDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIIN 451 (681)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 451 (681)
.++... +++..... ++-....|......+-..|++..|..++....+.. +-+...|-.-+..-....+++.|..+|.
T Consensus 566 ~Esl~A-llqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 566 RESLEA-LLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred HHHHHH-HHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 998888 66666653 45566677777778888999999999999988874 3367788888888999999999999999
Q ss_pred HHHHCCCCCCc----------cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 040136 452 EMLAKGLSLNT----------GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEI 521 (681)
Q Consensus 452 ~~~~~~~~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 521 (681)
+....+.+... .+..++|..++++.++.- +.-...|..+...+-+.++.+.|.+.|..-.+. +|....
T Consensus 643 kar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip 720 (913)
T KOG0495|consen 643 KARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP 720 (913)
T ss_pred HHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence 98886554433 688899999998888763 223567788888899999999999999877666 566777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC 601 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 601 (681)
.|..|...-.+.|.+-+|..++++..-+++. +...|-..+.+-.+.|+.+.|..+..+.++. ++.+...|..-|...-
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 8888888888899999999999999888655 7888999999999999999999999998875 5556677777777666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCc
Q 040136 602 KMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN-DATWYILVRNLVKEIN 675 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~ 675 (681)
+.++-......+++. .-|..+...+...+....+++.|++.|.+.++. .|| ..+|..+..-....|.
T Consensus 799 ~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred CcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCC
Confidence 666654444444433 446777777888888888888888888888874 344 4667666666666663
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-14 Score=145.33 Aligned_cols=558 Identities=15% Similarity=0.092 Sum_probs=376.5
Q ss_pred hcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHH
Q 040136 88 LRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQ 167 (681)
Q Consensus 88 l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (681)
+-.+|+.+.|.+++..+.++.+ ..+..|..+..++-.+|+.+.+...+-.+.-..+ .+...|..+.....+.|++++
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHH
Confidence 3347999999999999999886 6678899999999999999999988777766664 467999999999999999999
Q ss_pred HHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHH----HHHHHHHhcCChhHHHHHH
Q 040136 168 ATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFG----VVMKALCMVNEVDSACSLL 243 (681)
Q Consensus 168 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~g~~~~A~~~~ 243 (681)
|.-.|.++.+ .. +++...+---...|-+.|+...|...|.++.....+.|..-+. .+++.+...++.+.|.+.+
T Consensus 226 A~~cy~rAI~-~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 226 ARYCYSRAIQ-AN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHh-cC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999983 32 4555555556778889999999999999999985433333233 3456677778889999999
Q ss_pred HHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH----------------------HH----HH
Q 040136 244 RDMTKHG-CVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQT----------------------FN----DV 296 (681)
Q Consensus 244 ~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~----------------------~~----~l 296 (681)
+.....+ -..+...++.++..+.+...++.|......+......+|..- |. .+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 9887632 234556788999999999999999998888776222222111 11 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCCHHHHHHHHhhcCC----CChHHHHHHHHHHHhcC
Q 040136 297 IHGLCKVNRIHEAAKLVDRMLVRGFTP--DDITYGVLMHGLCRTGRVDEARALLNKIPS----ANVVLLNTVINGYVISG 370 (681)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g 370 (681)
.-++.+....+....+.....+....| +...|.-+..+|...|++.+|+.+|..+.. .+...|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 234445555666666666666666443 456788899999999999999999999877 56778999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--------cCCCcCHhhHHHHHHHHHhcCC
Q 040136 371 RFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAV--------KGCEPNIVTYTILVDGFCKEGQ 442 (681)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~g~ 442 (681)
..++|.+ +|+...... +-+...-..|...+.+.|+.++|.+.++.+.. .+..|+..........+.+.|+
T Consensus 464 e~e~A~e-~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 464 EYEEAIE-FYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hHHHHHH-HHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 9999999 888777653 22444556677788999999999999988542 2334455555566677888888
Q ss_pred HHHHHHHHHHHHHCCC-----CCCc------------c--------------------ccHHHHH---HHHHHHHhcCCC
Q 040136 443 LEKANIIINEMLAKGL-----SLNT------------G--------------------DRIEEAL---GLYQDMLLEGVT 482 (681)
Q Consensus 443 ~~~A~~~~~~~~~~~~-----~~~~------------~--------------------~~~~~a~---~~~~~~~~~~~~ 482 (681)
.++-..+..+|+.... -+.. . ...+.+. ..+......+..
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 8776655555543211 0100 0 0000000 001111111111
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC
Q 040136 483 ANT--VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP-LDEI----TYNGLIKALCNAGAVDKGLGLFEEMMRK-GIKPS 554 (681)
Q Consensus 483 ~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~ 554 (681)
.+. ..+..++.++++.+++++|..+...+.+.... .+.. .-...+.+.+..+++..|...++.|+.. +...+
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~ 701 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLD 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhh
Confidence 111 23455677888999999999998888765321 1222 2234456667788899998888888765 11111
Q ss_pred ---HHHHHHHHHHH-----------------------------------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 555 ---SISCNILINGL-----------------------------------CRTRKANTALEFLRDMIHRGLTPDIVTYNSL 596 (681)
Q Consensus 555 ---~~~~~~l~~~~-----------------------------------~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 596 (681)
...|+...+.. ..++.+..|+..+-+.... .||...++.+
T Consensus 702 ~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~ 779 (895)
T KOG2076|consen 702 VYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLC 779 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHH
Confidence 12333222211 2235566777776666653 5664444433
Q ss_pred HH-HHH----------hcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 597 IN-GLC----------KMGCIQEALNLFDKLQAEGIY-PDAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 597 ~~-~~~----------~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
+. ++. ++-.+-.++.++++..+.... --..++-.++++|...|-..-|..+|++.++.
T Consensus 780 lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 780 LGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 32 121 111234566676666654211 13567778999999999999999999999974
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-14 Score=135.14 Aligned_cols=365 Identities=15% Similarity=0.163 Sum_probs=175.5
Q ss_pred CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 040136 182 QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTL 261 (681)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 261 (681)
+.+..+|..+|.++|+--..+.|.+++++......+.+..+||.+|.+-.- ....+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 345556666666666666666666666666655555566666666554322 1225566666666666666666666
Q ss_pred HHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCCC----CcccH
Q 040136 262 IHALSKSNRVSE----ALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHE-AAKLVDRMLV----RGFTP----DDITY 328 (681)
Q Consensus 262 i~~~~~~~~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~ 328 (681)
+.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++| |...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 666666665543 34556666666666666666666666666555533 3333333332 11222 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 040136 329 GVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPD---VFTFNILIHGLCKQ 405 (681)
Q Consensus 329 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~ 405 (681)
...+..|.+..+.+-|.++..-....+ -.. -+.|+ ..-|..+....|+.
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~----------------N~~------------~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGD----------------NWK------------FIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCC----------------chh------------hcChHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554443322200 000 01111 12234444445555
Q ss_pred CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCH
Q 040136 406 RRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANT 485 (681)
Q Consensus 406 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 485 (681)
...+.-..+|+.|.-.-.-|+..+...++.+..-.+.++-..+++..+..-|... +-+-..+++..+....+.|+.
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~----r~~l~eeil~~L~~~k~hp~t 487 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF----RSDLREEILMLLARDKLHPLT 487 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh----hHHHHHHHHHHHhcCCCCCCC
Confidence 5555555555555544444445555555555555555555555555554443221 011112222222222222222
Q ss_pred HHHHHHHHHHHhc-CCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC---CHHHHH
Q 040136 486 VTYNTLIHAFLRR-GSLHEAH-KLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-KP---SSISCN 559 (681)
Q Consensus 486 ~~~~~li~~~~~~-g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p---~~~~~~ 559 (681)
..-..+-.+..+. -++.++. ..-.++.+. .......+.+.-.+.+.|..++|.++|..+.+++- .| ......
T Consensus 488 p~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 488 PEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 2111111111110 0111211 122233333 33444566666667777888888888777765432 22 223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
-+++.....++...|..+++-|...
T Consensus 566 El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 566 ELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 4455555566666777777666554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-14 Score=143.78 Aligned_cols=541 Identities=12% Similarity=0.063 Sum_probs=346.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHH
Q 040136 117 YYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLV 196 (681)
Q Consensus 117 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 196 (681)
....+..+..+|++++|..++.++++..+ .....|..|...|-..|+.+++...+-.+. ... +-|...|..+.....
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHH-hcC-CCChHHHHHHHHHHH
Confidence 34445566777999999999999999986 478899999999999999999998776665 222 566788999999999
Q ss_pred hcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH----HHHHHHHHhcCChh
Q 040136 197 AGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVY----QTLIHALSKSNRVS 272 (681)
Q Consensus 197 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~ 272 (681)
+.|++++|.-.|.+.++.. +++...+-.-...|-+.|+...|..-|.++.....+.|..-. ..+++.+...++.+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999985 335555556677888999999999999999987522222222 23456677778889
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------------------CCCC
Q 040136 273 EALMLLEEMILM-GCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRG---------------------------FTPD 324 (681)
Q Consensus 273 ~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~ 324 (681)
.|.+.++..... +-..+...++.++..+.+...++.|......+.... ..++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 999999888762 224456678888999999999999999888877611 1222
Q ss_pred ccc-HHHHHHHHHhcCCHHHHHHHHhhcCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 040136 325 DIT-YGVLMHGLCRTGRVDEARALLNKIPS----ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILI 399 (681)
Q Consensus 325 ~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll 399 (681)
..+ ...+.-...+.++..+++.-|..... .++..|..+..+|...|++.+|+. ++..+......-+...|..+.
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~-~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALR-LLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHH-HHHHHhcCccccchhhhHHHH
Confidence 222 11122222334445555444433222 456678899999999999999999 888888776666788899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-----------------
Q 040136 400 HGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT----------------- 462 (681)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------- 462 (681)
.+|...|.++.|...|+..+... +.+...-..|...+.+.|+.++|.+.+..+...+.....
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999998763 335666777888899999999999999987633211000
Q ss_pred ---cccHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------------
Q 040136 463 ---GDRIEEALGLYQDMLLEGV-----TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR-------------------- 514 (681)
Q Consensus 463 ---~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------- 514 (681)
.|+.++-+.....|..... -|+..--.....+-...+...+-......+...
T Consensus 536 l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~ 615 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAV 615 (895)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhh
Confidence 2233322222222221110 000000000000000000011101111111110
Q ss_pred ---CCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 515 ---GCPLD-E-ITYNGLIKALCNAGAVDKGLGLFEEMMRKGI--KPSS---ISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 515 ---~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
|...+ . ..+..++.++++.+++++|..+...+..... .++. ..-...+.+.+..+++..|...++.|...
T Consensus 616 e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 616 ELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11111 1 2344566677888888888888888776521 1111 22345566677788888888888888764
Q ss_pred -CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 040136 585 -GL--TPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA--VTYNTLISWHFKEGLFDDAFLILHKGVANGFVP 658 (681)
Q Consensus 585 -~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 658 (681)
+. .|. ...|+...+...+.++-.--.+++..+... .|+. ..+......+...+.+..|++.+-++.. ..|
T Consensus 696 ~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~p 771 (895)
T KOG2076|consen 696 FQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNP 771 (895)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCC
Confidence 11 121 234554555555555544444444444432 3332 2222233345677888999998888887 467
Q ss_pred CHHHHHHHH
Q 040136 659 NDATWYILV 667 (681)
Q Consensus 659 ~~~~~~~ll 667 (681)
|....+.++
T Consensus 772 d~Pl~nl~l 780 (895)
T KOG2076|consen 772 DSPLINLCL 780 (895)
T ss_pred CCcHHHHHH
Confidence 766555444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-14 Score=131.77 Aligned_cols=352 Identities=16% Similarity=0.146 Sum_probs=257.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 040136 252 VPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVL 331 (681)
Q Consensus 252 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (681)
+.+..++..||.++|+.-..+.|.+++++......+.+..+||.+|.+-.-. ...+++.+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 4457899999999999999999999999998877788999999998765433 338889999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH-
Q 040136 332 MHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGS- 410 (681)
Q Consensus 332 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~- 410 (681)
+.+.++-|+++.|+..+-+ +..+|++-|+.|...+|..+|..+++.++..+
T Consensus 280 L~c~akfg~F~~ar~aalq----------------------------il~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQ----------------------------ILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred HHHHHHhcchHHHHHHHHH----------------------------HHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 9999999999998886554 77889999999999999999999998887644
Q ss_pred HHHHHHHHHh----cCCCc----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCC
Q 040136 411 ALELVNAMAV----KGCEP----NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVT 482 (681)
Q Consensus 411 A~~~~~~~~~----~~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 482 (681)
+..++.++.. +.++| |...|...+..|.+..+.+-|..+-.-+.... .... +.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~-N~~~------------------ig 392 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD-NWKF------------------IG 392 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhh------------------cC
Confidence 4444444433 22333 44566777788888888888887766554431 1100 11
Q ss_pred C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 483 A---NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCN 559 (681)
Q Consensus 483 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 559 (681)
| ...-|..+..+.|+....+.-...|+.|+-.-+-|+..+...++.+..-.|.++-.-++|.+++..|...+.....
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e 472 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE 472 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH
Confidence 1 2234666777888888899999999998877777888888888888888888888888888888877555555554
Q ss_pred HHHHHHHhcC-CH--------H-----HHHHHH-------HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 560 ILINGLCRTR-KA--------N-----TALEFL-------RDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 560 ~l~~~~~~~g-~~--------~-----~A~~~~-------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.++..+++.. +. . -|..++ .++... .......+..+-.+.+.|+.++|.+++..+.+
T Consensus 473 eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~ 550 (625)
T KOG4422|consen 473 EILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLR 550 (625)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHh
Confidence 5555555443 11 0 011111 122222 33444566777778899999999999999976
Q ss_pred CC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 040136 619 EG----IYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGF 656 (681)
Q Consensus 619 ~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 656 (681)
.+ ..|.......+++.-...+....|...++-|...+.
T Consensus 551 ~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 551 KHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred cCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 53 233333444666777888889999999999887654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-13 Score=128.64 Aligned_cols=476 Identities=11% Similarity=0.071 Sum_probs=296.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHH
Q 040136 148 RESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVM 227 (681)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 227 (681)
+...|.....--..+++...|..+|++.. ... ..+...|--.+..=.++.+...|..++++....-+.. ...|--.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERAL-dvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-dqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERAL-DVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-DQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-hcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-HHHHHHHH
Confidence 34455555555555667777888888777 222 5566667777777777778888888887777652221 22344444
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIH 307 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 307 (681)
..--..|++..|.++|+...+- .|+..+|++.|+.-.+.+..+.|..++++..-. .|++.+|-....--.+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 4445567788888888877653 577888888888878888888888888777653 577777777777777778888
Q ss_pred HHHHHHHHHHHC-CC-CCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChHHHHHHHHHHHhcCCHHHHHHHH-
Q 040136 308 EAAKLVDRMLVR-GF-TPDDITYGVLMHGLCRTGRVDEARALLNKIPS-----ANVVLLNTVINGYVISGRFDEAKAIF- 379 (681)
Q Consensus 308 ~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~- 379 (681)
.+..+++.+.+. |- ..+...+.+....-.++..++.|.-+|+-..+ .....|..+...--+-|+.....+.+
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 888887777653 11 11233444455545566677777777654433 11334444444333444444333211
Q ss_pred ------HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCH--hhHHHHHHHHHhcCCHHHHHHHHH
Q 040136 380 ------YDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNI--VTYTILVDGFCKEGQLEKANIIIN 451 (681)
Q Consensus 380 ------~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~ 451 (681)
++.+.+. -+-|-.+|-..++.-...|+.+...++++..... ++|-. ..|.-.|-.+..- .+|.
T Consensus 305 ~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinY-------alye 375 (677)
T KOG1915|consen 305 GKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINY-------ALYE 375 (677)
T ss_pred hhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHH-------HHHH
Confidence 2222222 2335556666666666667777777777766654 23311 1122222221110 0111
Q ss_pred HHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 040136 452 EMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAF----LRRGSLHEAHKLVNDMLFRGCPLDEITYNGLI 527 (681)
Q Consensus 452 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 527 (681)
++. ..+++.+.++|+..+.. ++....|+..+--.| .++.+...|.+++...+. ..|-..+|...|
T Consensus 376 Ele--------~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YI 444 (677)
T KOG1915|consen 376 ELE--------AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYI 444 (677)
T ss_pred HHH--------hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHH
Confidence 111 12344444444444441 333445554443333 467788889888887764 467788888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCH
Q 040136 528 KALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL-TPDIVTYNSLINGLCKMGCI 606 (681)
Q Consensus 528 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~ 606 (681)
..=.+.+++|....++++.++-++. +..+|......-...|+.+.|..+|+-.++... ......|.+.|..-...|.+
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 8888889999999999999887644 678888887777788999999999998887521 12235677777777788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHHH
Q 040136 607 QEALNLFDKLQAEGIYPDAVTYNTLISWHF-----KEG-----------LFDDAFLILHKGVA 653 (681)
Q Consensus 607 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 653 (681)
+.|..+++.+++. .+...+|..+...-. +.| ....|..+|+++..
T Consensus 524 ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 524 EKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 9999999999885 455556666665433 334 45677788877765
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.8e-15 Score=137.64 Aligned_cols=466 Identities=12% Similarity=0.059 Sum_probs=293.0
Q ss_pred HHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCC----CChhhHHHHHHHH
Q 040136 191 VLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTF-GVVMKALCMVNEVDSACSLLRDMTKHGCV----PNSVVYQTLIHAL 265 (681)
Q Consensus 191 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~ 265 (681)
+.+-|..+....+|+..|+-+.++...|+.... ..+.+.+.+...+.+|++.++.....-.. ......+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 344555566778888888888888777776543 34556677888889999988877654211 1123455555567
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH--------HHHHHHHHh
Q 040136 266 SKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITY--------GVLMHGLCR 337 (681)
Q Consensus 266 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~ 337 (681)
.+.|+++.|+.-|+...+. .|+..+-..|+-++...|+.++..+.|.+|+.....||..-| ..|+.-..+
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 7889999999999888776 578777666777777889999999999998765333332211 122221111
Q ss_pred c---------C--CHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 040136 338 T---------G--RVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIP-DVFTFNILIHGLCKQ 405 (681)
Q Consensus 338 ~---------g--~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~ 405 (681)
. + +.++++-.-.++..|-+. -++....++..+.+......| -...-..-..-+.+.
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~------------~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIA------------PDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccc------------cchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 1 1 112222111111111000 000000010111111111000 000001112346677
Q ss_pred CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH-Hh-cCCHHHHHHHHHHHHHCCC-----------CCCccccHHHHHHH
Q 040136 406 RRFGSALELVNAMAVKGCEPNIVTYTILVDGF-CK-EGQLEKANIIINEMLAKGL-----------SLNTGDRIEEALGL 472 (681)
Q Consensus 406 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~-~g~~~~A~~~~~~~~~~~~-----------~~~~~~~~~~a~~~ 472 (681)
|+++.|.++++-+.+..-+.....-+.|-..+ .+ -.++..|..+-+..+..+. ..-..|+.+.|.+.
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHH
Confidence 78888777777666543222222223232222 22 2345666655555443221 11126778888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 040136 473 YQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK 552 (681)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 552 (681)
|++.+.....-....| .+.-.+-..|+.++|++.|-++... ...+..+...+.+.|....+...|++++.+.... ++
T Consensus 513 ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip 589 (840)
T KOG2003|consen 513 YKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP 589 (840)
T ss_pred HHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence 8877765222111222 2333467789999999988776543 2446777888888898899999999999888775 55
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 553 PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
.|+....-|...|-+.|+-.+|.+..-+--.. ++-+..+..+|..-|....-+++|+.+|+++.- +.|+..-|..++
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi 666 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI 666 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 67888899999999999999998887654443 566788888888888888889999999998876 689999998877
Q ss_pred HH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040136 633 SW-HFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINME 677 (681)
Q Consensus 633 ~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 677 (681)
.. +.+.|++..|..+++...++ ++.|......|++.+...|-.+
T Consensus 667 asc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 55 46689999999999999875 6778888888888887777544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-12 Score=126.37 Aligned_cols=453 Identities=11% Similarity=0.049 Sum_probs=253.2
Q ss_pred hCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHH----HHCCCCCChhhHHHHHHHHHhcCCh
Q 040136 161 RGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDM----LSKGISPTVYTFGVVMKALCMVNEV 236 (681)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~g~~ 236 (681)
+...++.|..++++..+ .++.+...|.+-...=-.+|+.+.+.+++.+- ...|+..+..-|..=...|-..|.+
T Consensus 418 rLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 418 RLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 33444555555555441 22444444444444444455555544444332 2234444444444444455555555
Q ss_pred hHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 237 DSACSLLRDMTKHGCVP--NSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVD 314 (681)
Q Consensus 237 ~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 314 (681)
-.+..+....+..|+.- .-.+|+.-...|.+.+.++-|..+|...++.- +-+...|...+..--..|..+....+++
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 55555555555444321 12345555555555555555555555554432 2334444444444444455555555555
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 040136 315 RMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPD 391 (681)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 391 (681)
++... ++-....|.....-+-..|++..|+.++.+.-+ .+...|-.-+.....+..++.|.. ++..... ..|+
T Consensus 575 kav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~-llakar~--~sgT 650 (913)
T KOG0495|consen 575 KAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARD-LLAKARS--ISGT 650 (913)
T ss_pred HHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHH-HHHHHhc--cCCc
Confidence 55544 122333344444444455555555555554433 233445555555555555555555 4433332 2344
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHH
Q 040136 392 VFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALG 471 (681)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 471 (681)
...|..-+...--.+..++|.+++++.++. ++.-...|..+.+.+-+.++++.|...|..-.+.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--------------- 714 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--------------- 714 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc---------------
Confidence 444444444444445555555555555543 1222344555555555555555555544433332
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 040136 472 LYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI 551 (681)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 551 (681)
++-.+..|..+...--+.|++-.|..+++...-.+ |-+...|...+.+=.+.|..+.|..+..++++. .
T Consensus 715 ---------cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c 783 (913)
T KOG0495|consen 715 ---------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-C 783 (913)
T ss_pred ---------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 23345667777777777788888888888877764 667888888888888888888888888888776 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 552 KPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTL 631 (681)
Q Consensus 552 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 631 (681)
+-+-..|..-|....+.++-....+.+++. .-|..+.-.+...+.....+++|.+.|.+.++.+ +.+-.+|..+
T Consensus 784 p~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~f 857 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWF 857 (913)
T ss_pred CccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHH
Confidence 334556666666666666655555444443 3466666677777777788888888888888753 3335677778
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 040136 632 ISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
...+...|.-++-.+++.+...
T Consensus 858 ykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhc
Confidence 8888888887777788887776
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-14 Score=131.41 Aligned_cols=483 Identities=12% Similarity=0.072 Sum_probs=290.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhCCChHHHHHHHHHcHhhc-CCCC--CHHhH
Q 040136 113 TFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFI-LIMKYYGRGGVPGQATRLLLDMKSVY-GCQP--TFRSY 188 (681)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~ 188 (681)
+..++..+..-|..+....+|...++-+++...-|+..... .+...+.+...+.+|+++|+...... .+.. .+...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 44555556666666667777777777777765444444332 45666777778888888877665211 0011 11233
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH--------HH
Q 040136 189 NVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVY--------QT 260 (681)
Q Consensus 189 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~ 260 (681)
+-+...+++.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|......+|..-| ..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44445567788888888888877765 467666555555666678888888888887654222221111 11
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 040136 261 LIHALSKSNRVSEALMLLEEMILMGCTSDVQTF----NDVIHGLCKVN----RIHEAAKLVDRMLVRGFTPDDITYGVLM 332 (681)
Q Consensus 261 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~----~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (681)
|+.--.+. +.++.|.+.. +.+..-+ ..+|.- .-.- ..+..++.++.-....+..+. -..-.
T Consensus 358 ll~eai~n-------d~lk~~ek~~-ka~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~~la~dl--ei~ka 426 (840)
T KOG2003|consen 358 LLNEAIKN-------DHLKNMEKEN-KADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHAELAIDL--EINKA 426 (840)
T ss_pred HHHHHHhh-------HHHHHHHHhh-hhhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhhhhhhhh--hhhHH
Confidence 11111111 1122222111 0111000 000000 0000 012222222221111000000 01112
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChHH----HHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040136 333 HGLCRTGRVDEARALLNKIPSANVVL----LNTVINGYVI--SGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQR 406 (681)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 406 (681)
.-|.+.|+++.|.++++-+...|..+ -+.|-..+.. ..++.+|.+ +-+...... +-+......-.+.....|
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq-yad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ-YADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH-HHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 34678888888888887776644433 2223222222 234555555 333332211 112222222222334578
Q ss_pred ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHH
Q 040136 407 RFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTV 486 (681)
Q Consensus 407 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 486 (681)
++++|...+++.+...-.-....|+ +.-.+-..|++++|+..|-.+..- + ..+..
T Consensus 505 d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i--------------------l----~nn~e 559 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI--------------------L----LNNAE 559 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH--------------------H----HhhHH
Confidence 8889988888887652111112222 223456678888888777655432 1 12677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
+...+.+.|-...+...|++++-+.... +|.|+.+...|...|-+.|+-..|.+.+-+--+. ++.+..+...|...|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHH
Confidence 7788888999999999999999888766 6889999999999999999999999877665554 4568889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 567 RTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL-CKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGL 640 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 640 (681)
...-+++|+.+|++..- +.|+..-|..++..| .+.|++++|.++++...++ ++-|.....-|++.+...|.
T Consensus 638 dtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999999998765 789999999887755 5899999999999999986 67778888888888887775
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-11 Score=116.23 Aligned_cols=465 Identities=12% Similarity=0.072 Sum_probs=320.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHH
Q 040136 116 VYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVL 195 (681)
Q Consensus 116 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 195 (681)
.+.....--..++++..|..+|+.+...+. .+...|...+.+-.++..+..|..++++.... ++.-...|.-.+-.=
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHH
Confidence 333334444466778888888888888764 46677888888888888888888888887621 122223444445445
Q ss_pred HhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 040136 196 VAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEAL 275 (681)
Q Consensus 196 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 275 (681)
-..|+...|.++|++..+. .|+...|.+.++.-.+.+..+.|..+++...-. .|++.+|-...+.-.+.|+...|.
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 5678888888888888775 688888888888888888888888888887764 388888888888888888888888
Q ss_pred HHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCC---HHHHHHH-
Q 040136 276 MLLEEMILM-GC-TSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD--DITYGVLMHGLCRTGR---VDEARAL- 347 (681)
Q Consensus 276 ~~~~~m~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~---~~~A~~~- 347 (681)
.+++...+. |- ..+...+.+...--..+..++.|.-+++-.++. ++.+ ...|..+...--+-|+ +++++--
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 888877753 10 111223333334344566777888888777765 2222 2334434333334444 3333321
Q ss_pred ----HhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH--HHHHH--------HHHHHhcCChhH
Q 040136 348 ----LNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVF--TFNIL--------IHGLCKQRRFGS 410 (681)
Q Consensus 348 ----~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~l--------l~~~~~~~~~~~ 410 (681)
++.... .|..+|-..+......|+.+...+ .|+.... +++|-.. .|... +-.-....+.+.
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire-~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE-TYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH-HHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222222 455677777777778899999988 7776665 4555321 12211 112235788999
Q ss_pred HHHHHHHHHhcCCCcCHhhHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHH
Q 040136 411 ALELVNAMAVKGCEPNIVTYTILVDG----FCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTV 486 (681)
Q Consensus 411 A~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 486 (681)
+.++++..++. ++....|+..+--. -.++.++..|.+++...+.. .|...
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~-------------------------cPK~K 438 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK-------------------------CPKDK 438 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc-------------------------CCchh
Confidence 99999998874 34455555554444 44677888888888776654 57788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG-IKPSSISCNILINGL 565 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~ 565 (681)
++...|..-.+.++++.+..+|++.++-+ |-+..+|......=...|+.+.|..+|.-+++.. .......|...|+.-
T Consensus 439 lFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFE 517 (677)
T KOG1915|consen 439 LFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFE 517 (677)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhh
Confidence 88888998899999999999999999985 6788899888888888999999999999998862 333456777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHHC
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC-----KMG-----------CIQEALNLFDKLQAE 619 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~ 619 (681)
...|.++.|..+++++++. .+...+|-.+...-. +.+ ....|..+|+.+...
T Consensus 518 i~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 518 IEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred hhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 8899999999999999986 344556665554332 333 456788888876653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-11 Score=113.50 Aligned_cols=386 Identities=14% Similarity=0.081 Sum_probs=252.2
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHH
Q 040136 217 SPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSD--VQTFN 294 (681)
Q Consensus 217 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~ 294 (681)
..|.+.+-.....+-+.|....|+..|......- |-.-.+|..|.+... + ++.+..... |.+.| ...=-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~----~e~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---D----IEILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---h----HHHHHHHHh-cCcccchHHHHH
Confidence 3454444444455666777888888887776653 334444444433322 1 122222221 11211 11111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHH
Q 040136 295 DVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDE 374 (681)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 374 (681)
-+..++....+.+++.+-.+.....|++.+...-+....+.....++++|+.+|+++.+.|+.-
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR---------------- 295 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR---------------- 295 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc----------------
Confidence 2345555666777777777777777776555555555555556667777777666654422100
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 375 AKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEML 454 (681)
Q Consensus 375 a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 454 (681)
--|..+|+.++-. +..+- .+..+.+-...--+-.+.|...+.+-|.-.++.++|...|+..+
T Consensus 296 --------------l~dmdlySN~LYv--~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL 357 (559)
T KOG1155|consen 296 --------------LDDMDLYSNVLYV--KNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL 357 (559)
T ss_pred --------------chhHHHHhHHHHH--HhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH
Confidence 1144555555532 22211 11111111111012345567777778888888888888888888
Q ss_pred HCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 040136 455 AKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG 534 (681)
Q Consensus 455 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 534 (681)
+.+. .....|+.+.+-|...++...|++-++.+++.+ |.|-..|-.|+.+|.-.+
T Consensus 358 kLNp------------------------~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 358 KLNP------------------------KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred hcCc------------------------chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhc
Confidence 7642 256678888888999999999999999998874 778889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 535 AVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFD 614 (681)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (681)
.+.-|+-+|+++.+-. +.|...|.+|+.+|.+.++.++|++.|++....|-. +...+..|.+.+-+.++.++|...|+
T Consensus 413 Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 413 MHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred chHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999998863 337788999999999999999999999998886533 55778889999999999999999888
Q ss_pred HHHHC----CCCCC-H-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 615 KLQAE----GIYPD-A-VTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEI 674 (681)
Q Consensus 615 ~~~~~----~~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 674 (681)
+.++. |...+ . ....-|...+.+.+++++|..+...... | .+...--..|++.+.+..
T Consensus 491 k~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 491 KYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ETECEEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-CchHHHHHHHHHHHHHhc
Confidence 87763 33323 2 1223356677888999999988887776 3 677777778888777654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-11 Score=113.09 Aligned_cols=332 Identities=11% Similarity=0.034 Sum_probs=233.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChHHHHHHHHH
Q 040136 287 TSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSA-NVVLLNTVING 365 (681)
Q Consensus 287 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~ 365 (681)
..|...+-.....+-+.|....|++.|...+.. -+..|.+-+....-..+.+.+..+...+... ....--.+..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 445444444444556677788888888777654 2233433333333333444444433333331 11122233455
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CcCHhhHHHHHHHHHhcCCH
Q 040136 366 YVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGC--EPNIVTYTILVDGFCKEGQL 443 (681)
Q Consensus 366 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~ 443 (681)
+....+.++++. =.+.....|++-+...-+....+.....+++.|+.+|+++.+... -.|..+|..++-. +..+-
T Consensus 237 ~~el~q~~e~~~-k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s 313 (559)
T KOG1155|consen 237 YQELHQHEEALQ-KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS 313 (559)
T ss_pred HHHHHHHHHHHH-HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence 666667777777 556666666665555555555566677888888888888887621 0155667666533 22221
Q ss_pred HHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 040136 444 EKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITY 523 (681)
Q Consensus 444 ~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 523 (681)
.- ..+.+-... + . +--+.|...+.+-|.-.++.++|...|+..++.+ |-...+|
T Consensus 314 kL--s~LA~~v~~-------------------i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aW 367 (559)
T KOG1155|consen 314 KL--SYLAQNVSN-------------------I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAW 367 (559)
T ss_pred HH--HHHHHHHHH-------------------h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHH
Confidence 11 111110000 0 0 1134566777788889999999999999999985 5677889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 524 NGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM 603 (681)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 603 (681)
+.+++-|...++...|++-++++++-.. .|...|-.|+.+|.-.+...-|+-+|++..+. .+-|...|.+|.++|.+.
T Consensus 368 TLmGHEyvEmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 368 TLMGHEYVEMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHhhHHHHHhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999753 38899999999999999999999999999985 244789999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 604 GCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 604 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
++.++|++.|......| ..+...+..|.+.|-+.++.++|.+.+++.++.
T Consensus 446 ~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred ccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999976 446789999999999999999999999988873
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.5e-10 Score=109.07 Aligned_cols=507 Identities=13% Similarity=0.146 Sum_probs=288.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHH
Q 040136 117 YYVLIDKLGANKEFKVIDSVLLQMKEEG-IICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVL 195 (681)
Q Consensus 117 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 195 (681)
+..-+..+..+|+.......|+.....- +.....+|...++.....|.++-+..+|++.. +.++..-+-.|..+
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL-----k~~P~~~eeyie~L 179 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL-----KVAPEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH-----hcCHHHHHHHHHHH
Confidence 3344455567777778888887766543 23345677788888888888888888888888 56666677888888
Q ss_pred HhcCCcCcHHHHHHHHHHCC------CCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCh--hhHHHHHHH
Q 040136 196 VAGNCHKVAPNLFYDMLSKG------ISPTVYTFGVVMKALCMVNEV---DSACSLLRDMTKHGCVPNS--VVYQTLIHA 264 (681)
Q Consensus 196 ~~~~~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~~--~~~~~li~~ 264 (681)
+..+++++|.+.+...+... -+.+...|..+-....+.-+. -....+++.+...- +|. ..|++|.+-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--tDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--TDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--cHHHHHHHHHHHHH
Confidence 88888888888887776542 122444555555544443322 23444555554432 333 568888888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCC-
Q 040136 265 LSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVN----------------------RIHEAAKLVDRMLVRGF- 321 (681)
Q Consensus 265 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~a~~~~~~~~~~~~- 321 (681)
|.+.|.+++|.+++++.... ...+.-|..+.+.|..-. +++....-|+.+...+.
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 99999999999998887754 223333444444443211 12223333333333210
Q ss_pred ----------CCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC---------CChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 322 ----------TPDDITYGVLMHGLCRTGRVDEARALLNKIPS---------ANVVLLNTVINGYVISGRFDEAKAIFYDS 382 (681)
Q Consensus 322 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 382 (681)
+-++..|..-+.. ..|+..+-...|.+... .-...|..+...|-..|+.+.|.. +++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv-ifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV-IFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH-HHHH
Confidence 1112222222222 23444444445544332 222468888889999999999998 7777
Q ss_pred HHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----------CCc------CHhhHHHHHHHHHhcCC
Q 040136 383 MLSVGCIPD---VFTFNILIHGLCKQRRFGSALELVNAMAVKG-----------CEP------NIVTYTILVDGFCKEGQ 442 (681)
Q Consensus 383 ~~~~~~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-----------~~~------~~~~~~~ll~~~~~~g~ 442 (681)
..+...+-- ..+|.....+-.+..+++.|+++++.....- .++ +...|...++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 666544322 2445555666667888888888887765321 111 23356666666666778
Q ss_pred HHHHHHHHHHHHHCCCCCCc-----------cccHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHh---cCCHHHHHHH
Q 040136 443 LEKANIIINEMLAKGLSLNT-----------GDRIEEALGLYQDMLLEGVTANT-VTYNTLIHAFLR---RGSLHEAHKL 507 (681)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~ 507 (681)
++....+++.+++..+..+. ..-++++...|++-+..-..|+. ..|+..+.-+.+ ...++.|..+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 88888888888776554332 34455555555554444344444 345554444432 2246667777
Q ss_pred HHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 508 VNDMLFRGCPLDEITYNGLIK--ALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
|++.++ |+||...-+.-|+- .=.+.|....|+.+++++... +++. ...||..|.-....=-+.....++++.++
T Consensus 573 FEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 573 FEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 777666 45543322222211 112346666666666665543 2222 24455555444444444555666666666
Q ss_pred CCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCC
Q 040136 584 RGLTPDIVTYNS---LINGLCKMGCIQEALNLFDKLQAEGIYP--DAVTYNTLISWHFKEGL 640 (681)
Q Consensus 584 ~~~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 640 (681)
. -|+...-.. ..+.-++.|..+.|..++....+. +.| +...|.+.=..-.+.|+
T Consensus 651 ~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 651 S--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred h--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 3 444433322 223335667777777776666554 233 34455655555666666
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-11 Score=123.18 Aligned_cols=536 Identities=14% Similarity=0.078 Sum_probs=312.4
Q ss_pred hCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCH
Q 040136 106 SQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTF 185 (681)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 185 (681)
...|..|+..+|..++.-|+..|+.+.|- +|.-|.-...+.+..+|..++.+..++|+.+.+. .|-.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~a 83 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLA 83 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCch
Confidence 44678888889999999999999999888 8888887777778888888888877777776552 5677
Q ss_pred HhHHHHHHHHHhcCCcCcHHHHHHH-HHH-------CCC-----------------CCChhhHHHHHHHHHhcCChhHHH
Q 040136 186 RSYNVVLDVLVAGNCHKVAPNLFYD-MLS-------KGI-----------------SPTVYTFGVVMKALCMVNEVDSAC 240 (681)
Q Consensus 186 ~~~~~ll~~~~~~~~~~~A~~~~~~-m~~-------~~~-----------------~p~~~~~~~ll~~~~~~g~~~~A~ 240 (681)
.+|..++.+|.+.|+... ++..++ |.. .|+ -||..+ ++......|-++.+.
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqll 159 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLL 159 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHH
Confidence 788888888888887654 222222 111 111 112111 111111112222222
Q ss_pred ------------------------------HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 040136 241 ------------------------------SLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDV 290 (681)
Q Consensus 241 ------------------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 290 (681)
+++.......-.|++.+|.+++++-...|+.+.|..++.+|.+.|.+.+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 22222221111488999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcC
Q 040136 291 QTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISG 370 (681)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (681)
..|-.|+-+ .++...++.++.-|.+.|+.|+..|+..-+-.+..+|....+......-.......+..+..+.....
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 877777755 88889999999999999999999999887777777665333222211111111222333333211111
Q ss_pred CHHHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--C-CcCHhhHHHHHHHHHhcCC
Q 040136 371 RFDEA-----KAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKG--C-EPNIVTYTILVDGFCKEGQ 442 (681)
Q Consensus 371 ~~~~a-----~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~ll~~~~~~g~ 442 (681)
+.+.- .. .++...-.|.......|.... -...+|.-+...++...+..-- . ..++..|..++.-|.+.-+
T Consensus 317 ~l~~nl~~~v~~-s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 317 RLRQNLRKSVIG-STKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred HHHHHHHHHHHH-HhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 11111 11 111111113222223333222 2233677777777776665321 1 1234455555555544322
Q ss_pred HHHHHHHHH--HHHHCCCCCCc-------------cccHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHhcCC
Q 040136 443 LEKANIIIN--EMLAKGLSLNT-------------GDRIEEALGLYQDMLLEGVT-------ANTVTYNTLIHAFLRRGS 500 (681)
Q Consensus 443 ~~~A~~~~~--~~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g~ 500 (681)
......++. +.+........ +.....-..+...-...... +-...-+.++..+++.-+
T Consensus 395 ~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n 474 (1088)
T KOG4318|consen 395 RHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYN 474 (1088)
T ss_pred hhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 111111111 11111111000 00000000000000000000 111233455666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK--GIKPSSISCNILINGLCRTRKANTALEFL 578 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (681)
..+++..-+.....-++ ..|..|++-++.....+.|..+.++.... .+..+..-+..+.+.+.+.+....+..++
T Consensus 475 ~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 475 KLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 66666444433332111 57889999999999999999999988654 33445666788899999999999999999
Q ss_pred HHHHHCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 040136 579 RDMIHRGL-TPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGF 656 (681)
Q Consensus 579 ~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 656 (681)
+++.+.-. .|+ ..+.-.+++.....|+.+.-.++++-+...|+... ..++..+.+.++...|.+..+..... +
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qk-y 626 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQK-Y 626 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHH-h
Confidence 99987411 222 34555677777888999999999988888775442 44555666777777777777666553 4
Q ss_pred CCCHHHHHHHHHHHH
Q 040136 657 VPNDATWYILVRNLV 671 (681)
Q Consensus 657 ~~~~~~~~~ll~~~~ 671 (681)
+|.+.....+.+.+.
T Consensus 627 k~~P~~~e~lcrlv~ 641 (1088)
T KOG4318|consen 627 KPYPKDLEGLCRLVY 641 (1088)
T ss_pred cCChHHHHHHHHHHH
Confidence 555555444444433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-11 Score=113.63 Aligned_cols=220 Identities=19% Similarity=0.145 Sum_probs=167.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCC
Q 040136 402 LCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGV 481 (681)
Q Consensus 402 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 481 (681)
+.-.|+...|..-|+........ +...|-.+..+|....+.++....|+...+.+.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp----------------------- 391 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP----------------------- 391 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-----------------------
Confidence 33467888888888888876422 333477777788899999998888888877653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 482 TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNIL 561 (681)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 561 (681)
.|+.+|..-...+.-.+++++|..-|++.+... |-+...|..+.-+..+.+++++++..|++.+++ ++..+..|+..
T Consensus 392 -~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~f 468 (606)
T KOG0547|consen 392 -ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLF 468 (606)
T ss_pred -CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHH
Confidence 366777777777888888999999999888774 557777877777778888999999999998887 44467888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-------H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 040136 562 INGLCRTRKANTALEFLRDMIHRGLTPD-------I--VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTL 631 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 631 (681)
...+..++++++|.+.|+..++. .|+ . .+-..++. +.-.+++..|++++.++.+. .|- ...|..|
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tl 543 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIEL--DPKCEQAYETL 543 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHcc--CchHHHHHHHH
Confidence 89999999999999999988874 333 1 11122222 22348888999999998884 554 5678888
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 040136 632 ISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.......|+.++|+++|++...
T Consensus 544 aq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 544 AQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888999999999999988764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=140.39 Aligned_cols=260 Identities=15% Similarity=0.145 Sum_probs=109.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcC
Q 040136 363 INGYVISGRFDEAKAIFYDSMLSVG-CIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEG 441 (681)
Q Consensus 363 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 441 (681)
...+.+.|++++|++ +++...... .+.|...|..+.......++++.|...++++...+. .+...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~-~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALE-VLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccc
Confidence 445556666666666 443222222 122344444455566677888888888888877642 255566666666 6788
Q ss_pred CHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH
Q 040136 442 QLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG-CPLDE 520 (681)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 520 (681)
++++|..++....+. .+++..+..++..+.+.++++++.++++.+.... .+.+.
T Consensus 92 ~~~~A~~~~~~~~~~-------------------------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (280)
T PF13429_consen 92 DPEEALKLAEKAYER-------------------------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA 146 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-H
T ss_pred ccccccccccccccc-------------------------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH
Confidence 888888777665443 2356667778888889999999999998876542 34577
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
..|..+...+.+.|+.++|+..++++++..+. |....+.++..+...|+.+++.++++...... +.|...+..+..++
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAY 224 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHh
Confidence 78888889999999999999999999987432 57778889999999999999888888887752 44566788899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
...|+.++|...+++..+.. +.|..+...+++++...|+.++|.++++++.+
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 99999999999999998852 44677778899999999999999999888764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-11 Score=124.42 Aligned_cols=116 Identities=11% Similarity=0.031 Sum_probs=56.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH--HHHHHHHhcCCHHHHH
Q 040136 268 SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYG--VLMHGLCRTGRVDEAR 345 (681)
Q Consensus 268 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~ 345 (681)
.|+++.|.+.+....+..-. ....|........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 46666666666654443211 1222222334445666667776666666553 33332221 2244555666666666
Q ss_pred HHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040136 346 ALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVG 387 (681)
Q Consensus 346 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (681)
..++++.+ .++.....+...|.+.|++++|.+ ++..+.+.+
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~-~l~~l~k~~ 217 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD-ILPSMAKAH 217 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHcC
Confidence 65555444 233344444445555555555555 444444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-09 Score=103.09 Aligned_cols=502 Identities=10% Similarity=0.038 Sum_probs=330.3
Q ss_pred HhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChH
Q 040136 87 LLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPG 166 (681)
Q Consensus 87 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (681)
.+-.+++...-...|+.++..-+.......+...+......|-++-+.+++++..+..+ .....-+..++..++.+
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P----~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP----EAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH----HHHHHHHHHHHhccchH
Confidence 33457888888888888888777777777888888888899999999999999998654 45667788888999999
Q ss_pred HHHHHHHHcHhh------cCCCCCHHhHHHHHHHHHhcCC---cCcHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCC
Q 040136 167 QATRLLLDMKSV------YGCQPTFRSYNVVLDVLVAGNC---HKVAPNLFYDMLSKGISPT--VYTFGVVMKALCMVNE 235 (681)
Q Consensus 167 ~A~~~~~~~~~~------~~~~~~~~~~~~ll~~~~~~~~---~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~ 235 (681)
+|.+.+..+... .| +.+-..|..+-...+++-+ --....+++.++.. -+| ...|..|.+.|.+.|.
T Consensus 187 eaa~~la~vln~d~f~sk~g-kSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKG-KSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred HHHHHHHHhcCchhhhhhcc-cchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhh
Confidence 999999887621 11 4455567777666665533 33444555555544 334 4578999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----------------------ChhHHHHHHHHHHHCC--------
Q 040136 236 VDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSN----------------------RVSEALMLLEEMILMG-------- 285 (681)
Q Consensus 236 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~A~~~~~~m~~~~-------- 285 (681)
+++|..+|++....- .++.-|..+.++|+... +++-.+.-|+.+...+
T Consensus 264 ~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 264 FEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 999999999987652 33444555555554321 1222333444444321
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------cccHHHHHHHHHhcCCHHHHHHHHhhcCCCCh
Q 040136 286 ---CTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD------DITYGVLMHGLCRTGRVDEARALLNKIPSANV 356 (681)
Q Consensus 286 ---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 356 (681)
-+.++..|..-+. +..|+..+-...+.++.+. +.|. ...|..+.+.|-..|+++.|+.+|++....+-
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 1223344443333 2356777888888888764 3332 23578889999999999999999999887332
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-----------------CHHHHHHHHHHHHhcCChhHHH
Q 040136 357 -------VLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIP-----------------DVFTFNILIHGLCKQRRFGSAL 412 (681)
Q Consensus 357 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-----------------~~~~~~~ll~~~~~~~~~~~A~ 412 (681)
.+|-.-...-.+..+++.|++ +.+......-.| +...|...+......|-++...
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~-lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALK-LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHH-HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 345555566667788888988 544443221111 2234455566666678888999
Q ss_pred HHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----------------cccHHHHHHHHHHH
Q 040136 413 ELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT----------------GDRIEEALGLYQDM 476 (681)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~~a~~~~~~~ 476 (681)
.+++.+.+..+.. +.......-.+-.+..++++.+++++-+..-.-|+. ..+++.|..+|++.
T Consensus 498 ~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 498 AVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999998875432 222222222234455677777776543332222221 56889999999999
Q ss_pred HhcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 040136 477 LLEGVTANTVTYNTLIH--AFLRRGSLHEAHKLVNDMLFRGCPLD--EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK 552 (681)
Q Consensus 477 ~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 552 (681)
++ |.+|...-+.-|+- .--+.|-...|+.+++++... +++. ...||..|.--...=.+.....+|+++++. -
T Consensus 577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--L 652 (835)
T KOG2047|consen 577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--L 652 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--C
Confidence 98 55554332222221 223457788899999997654 4432 346777666544444467788999999986 4
Q ss_pred CCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCH
Q 040136 553 PSSIS---CNILINGLCRTRKANTALEFLRDMIHR-GLTPDIVTYNSLINGLCKMGCI 606 (681)
Q Consensus 553 p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~ 606 (681)
|+... .--+.+.-++.|..+.|..++.-..+- +..-+...|.+.-..-.+.|+-
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 55433 334455667889999999999877664 2333567788888888899993
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-11 Score=124.50 Aligned_cols=259 Identities=12% Similarity=0.049 Sum_probs=184.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHH
Q 040136 367 VISGRFDEAKAIFYDSMLSVGCIPDVFTFN--ILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLE 444 (681)
Q Consensus 367 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 444 (681)
.+.|+++.|.. .+..+.+. .|+..... .....+...|+++.|...++.+.+.. +-+...+..+...|.+.|+++
T Consensus 129 ~~~g~~~~A~~-~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 129 QQRGDEARANQ-HLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHCCCHHHHHH-HHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence 45555555555 55555432 34433222 23556777888888888888887764 446677788888888888888
Q ss_pred HHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 040136 445 KANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYN 524 (681)
Q Consensus 445 ~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 524 (681)
+|..++..+.+...... ++..++ ....|..++.......+.+...++++.+.+. .+.++....
T Consensus 205 ~a~~~l~~l~k~~~~~~-----~~~~~l-----------~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~ 267 (398)
T PRK10747 205 SLLDILPSMAKAHVGDE-----EHRAML-----------EQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQV 267 (398)
T ss_pred HHHHHHHHHHHcCCCCH-----HHHHHH-----------HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHH
Confidence 88888888877643210 000000 0012333333334445566666777666544 356888889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 525 GLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG 604 (681)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (681)
.+...+...|+.++|...+++..+. .|+.... ++.+....++.+++++..++..+. .+-|...+..+...|.+.|
T Consensus 268 ~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~ 342 (398)
T PRK10747 268 AMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHG 342 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999885 4454322 234444669999999999999886 3345667888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 605 CIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
++++|.+.|+++.+ ..|+..++..+..++.+.|+.++|.+++++.+.
T Consensus 343 ~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 343 EWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999998 489999999999999999999999999998875
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.6e-11 Score=114.51 Aligned_cols=490 Identities=13% Similarity=0.058 Sum_probs=236.3
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATR 170 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 170 (681)
+..+..|+-+-+. ..+...++....++...+.-.|.+..|..++..-.-.+ .+......+..++.+..++++|..
T Consensus 29 q~~y~~a~f~adk---V~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~--~d~~cryL~~~~l~~lk~~~~al~ 103 (611)
T KOG1173|consen 29 QHRYKTALFWADK---VAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEK--RDIACRYLAAKCLVKLKEWDQALL 103 (611)
T ss_pred HHhhhHHHHHHHH---HHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555443333 33445666666777777777777777777776654433 255666777777777777777777
Q ss_pred HHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040136 171 LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHG 250 (681)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 250 (681)
++.+.. +..++..|..--. ...-..+.+. ++.. +......+-.-.+.|....+.++|...+.+....+
T Consensus 104 vl~~~~----~~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 104 VLGRGH----VETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred Hhcccc----hhhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 765332 0112222111100 0000011111 0000 11111122222334555566777777777766543
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 040136 251 CVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMG----CTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDI 326 (681)
Q Consensus 251 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 326 (681)
...+..+...-.. ..-.+.+.++.+.... ...+......+.........-+.....-.+..-.+..-+..
T Consensus 172 ----~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~d 245 (611)
T KOG1173|consen 172 ----AKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLD 245 (611)
T ss_pred ----hhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHH
Confidence 3333332221111 1111222222222110 00111111111111100000000000000000111222333
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040136 327 TYGVLMHGLCRTGRVDEARALLNKIPSA---NVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLC 403 (681)
Q Consensus 327 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 403 (681)
....-.+-+...+++.+..++++.+.+. ....+..-|.++...|+..+-.. +-..+.+. .+-...+|-++.-.|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~-lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFL-LSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHH-HHHHHHHh-CCCCCcchhhHHHHHH
Confidence 3344444455555666666655555442 22233334445555555555544 33334432 2334455666655555
Q ss_pred hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCC
Q 040136 404 KQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTA 483 (681)
Q Consensus 404 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 483 (681)
..|+..+|.+.|.+..... +.=...|-.+...|+-.|..++|...+...-+.- +-
T Consensus 324 ~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~------------------------~G 378 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM------------------------PG 378 (611)
T ss_pred HhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc------------------------cC
Confidence 6666666666665554331 1112345555556666666666655555443320 00
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC----CCHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK--GIK----PSSIS 557 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~ 557 (681)
...-+.-+.--|.+.++.+.|.+.|.+.... .|.|+..++-+.-.....+.+.+|..+|+..+.. ... -...+
T Consensus 379 ~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~ 457 (611)
T KOG1173|consen 379 CHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT 457 (611)
T ss_pred CcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence 1111222333456667777777777776665 3556667776666666667777777777766521 000 12345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
++.|+.+|.+.+++++|+..+++.+.. .+-|..++.++.-.|...|+++.|++.|.+.+. +.||..+...+++.
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 666777777777777777777776664 334666666676677777777777777777665 46666555555543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-11 Score=124.22 Aligned_cols=132 Identities=13% Similarity=-0.015 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIK--ALCNAGAVDKGLGLFEEMMRKGIKPSS--ISCN 559 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~ 559 (681)
+...+..+...+...|+.++|.+++++..+.. +.+......++. .....++.+.+...++...+... -|. ....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHHH
Confidence 34444444445555555555555555554431 111110000111 11223444555555555554321 122 3444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555555532222234555555555555555566555655555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-11 Score=122.85 Aligned_cols=230 Identities=13% Similarity=0.054 Sum_probs=160.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHH
Q 040136 398 LIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDML 477 (681)
Q Consensus 398 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 477 (681)
....+...|+++.|...++.+.+.. +-+..++..+...+.+.|+++.|.+.+..+.+.+..
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~------------------ 219 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF------------------ 219 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC------------------
Confidence 4666777888888888888887764 335667777888888888888888888887776422
Q ss_pred hcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 478 LEGVTANTVTYN----TLIHAFLRRGSLHEAHKLVNDMLFRG---CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 478 ~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
+...+. .........+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|...+++..+..
T Consensus 220 ------~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 220 ------DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Confidence 222111 11111122233333344444444431 12478889999999999999999999999999974
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 551 IKPSSIS-CNILINGLCRTRKANTALEFLRDMIHRGLTPDI--VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 551 ~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
....... ...........++.+.+.+.+++..+. .+-|. ....++.+.+.+.|++++|.+.|+........|+...
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 3322111 122222234457889999999988875 22244 5667899999999999999999995444335899999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+..+...+.+.|+.++|.+++++.+.
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999998765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.7e-13 Score=130.53 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGL 565 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (681)
.+|+.+.+-+.....+|.|...|+..+... +-+-.+|-.++..|.+.++++.|+-.|+.+++.++. +.+....++..+
T Consensus 456 YayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 456 YAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQ 533 (638)
T ss_pred hhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHH
Confidence 344444444444444444444444444331 122233444444555555555555555555543322 334444444445
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHH
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 644 (681)
-+.|+.++|+++++++...+.+ |+-.--.-+..+...+++++|...++++.+. .|+ ..++..++..|.+.|+.+.|
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHH
Confidence 5555555555555555443211 2222222333444445555555555555552 332 33444455555555555555
Q ss_pred HHHHHHHHH
Q 040136 645 FLILHKGVA 653 (681)
Q Consensus 645 ~~~~~~~~~ 653 (681)
+.-|.-|.+
T Consensus 611 l~~f~~A~~ 619 (638)
T KOG1126|consen 611 LLHFSWALD 619 (638)
T ss_pred HHhhHHHhc
Confidence 555555544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-14 Score=137.22 Aligned_cols=260 Identities=16% Similarity=0.161 Sum_probs=69.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 040136 261 LIHALSKSNRVSEALMLLEEMILMG-CTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTG 339 (681)
Q Consensus 261 li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 339 (681)
+...+.+.|++++|++++++..... .+.|...|..+...+...++++.|++.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3445555555555555554332221 1223333344444444555555555555555544322 33334444433 3444
Q ss_pred CHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 340 RVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMA 419 (681)
Q Consensus 340 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 419 (681)
++++|.+++++.-+ . .++...+..++..+.+.++++++..+++.+.
T Consensus 92 ~~~~A~~~~~~~~~--------------------------------~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~ 137 (280)
T PF13429_consen 92 DPEEALKLAEKAYE--------------------------------R--DGDPRYLLSALQLYYRLGDYDEAEELLEKLE 137 (280)
T ss_dssp ------------------------------------------------------------H-HHHTT-HHHHHHHHHHHH
T ss_pred cccccccccccccc--------------------------------c--ccccchhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44544444333111 1 1233333444444555555555555555544
Q ss_pred hcC-CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040136 420 VKG-CEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRR 498 (681)
Q Consensus 420 ~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 498 (681)
... .+.+...|..+...+.+.|+.++|...+++.++.. +.|......++..+...
T Consensus 138 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~------------------------P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 138 ELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD------------------------PDDPDARNALAWLLIDM 193 (280)
T ss_dssp H-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------------------------TT-HHHHHHHHHHHCTT
T ss_pred hccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------------CCCHHHHHHHHHHHHHC
Confidence 321 22344455555555555555555555555555542 11344555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 499 GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFL 578 (681)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (681)
|+.+++.++++...+.. +.|+..+..+..+|...|+.++|..+|++..+.. +.|+.....+..++...|+.++|.++.
T Consensus 194 ~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp CHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT------------
T ss_pred CChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 55555555555554442 3344455555556666666666666666655542 225555555556666666666666555
Q ss_pred HHHH
Q 040136 579 RDMI 582 (681)
Q Consensus 579 ~~~~ 582 (681)
++..
T Consensus 272 ~~~~ 275 (280)
T PF13429_consen 272 RQAL 275 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 5543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-10 Score=110.14 Aligned_cols=510 Identities=13% Similarity=0.047 Sum_probs=323.0
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
.+..-+..+++-+..+.++.-|.-+-+++...+ .++.-...++.++.-.|+++.|..+...-.-+ ..|..+....
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le---~~d~~cryL~ 88 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE---KRDIACRYLA 88 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh---hhhHHHHHHH
Confidence 456667777777777777888877777777666 35555556677777777777777766654311 5666666677
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRV 271 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 271 (681)
...+.+..++++|..++..-. +.-+.+.|...=. ...-..+.+.+.. .. ......+-.-...|....+.
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~~----~~--~~essic~lRgk~y~al~n~ 157 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAGEDL----MI--NLESSICYLRGKVYVALDNR 157 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCcccccc----cc--cchhceeeeeeehhhhhccH
Confidence 777777777777777765320 1111111111000 0111111111000 00 00111111122345556677
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhcCCHHHHHHHH-
Q 040136 272 SEALMLLEEMILMGCTSDVQTFNDVIHGLCKV-NRIHEAAKLVDRMLVR-GFTPDDITYGVLMHGLCRTGRVDEARALL- 348 (681)
Q Consensus 272 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~- 348 (681)
++|...+.+.... |...+..+...-... -..++-..+++.+--. -..-+......+.....-...-+.....-
T Consensus 158 ~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~ 233 (611)
T KOG1173|consen 158 EEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNE 233 (611)
T ss_pred HHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCc
Confidence 8888888877743 444443332211110 0011112222210000 00011111111211110000000000000
Q ss_pred -hhcCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040136 349 -NKIPS--ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEP 425 (681)
Q Consensus 349 -~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 425 (681)
+.+.. .++.......+-+...+++.+..+ +.+.+.+. .++....+..-|.++...|+..+-..+=.++.+. .|.
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~k-it~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~ 310 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLK-ITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPS 310 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHH-HhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCC
Confidence 01111 455566666777888999999999 66665553 2445555555667888899888877777777766 355
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAH 505 (681)
Q Consensus 426 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (681)
...+|-++.--|.-.|..++|++.|.+....+.. =...|....+.|+-.|..++|.
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~------------------------fgpaWl~fghsfa~e~EhdQAm 366 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT------------------------FGPAWLAFGHSFAGEGEHDQAM 366 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc------------------------ccHHHHHHhHHhhhcchHHHHH
Confidence 6788999998888899999999999887665321 2457888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 040136 506 KLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHR- 584 (681)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 584 (681)
..+..+.+. .+-....+--+.--|.+.+..+.|.++|.++.... +-|+..++-+.-.....+.+.+|..+|+..+..
T Consensus 367 aaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 367 AAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred HHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 999887765 23333344455667888999999999999998863 337788888888888899999999999988742
Q ss_pred -CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 040136 585 -GLT----PDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN 659 (681)
Q Consensus 585 -~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 659 (681)
.+. --..+++.|..+|.+.+.+++|+..+++.+.. .+-|..++.+++-.|...|+++.|.+.|.+.+- +.|+
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~ 521 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPD 521 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCc
Confidence 111 13456889999999999999999999999986 356788999999999999999999999999995 8899
Q ss_pred HHHHHHHHHHHHhc
Q 040136 660 DATWYILVRNLVKE 673 (681)
Q Consensus 660 ~~~~~~ll~~~~~~ 673 (681)
..+...++..+...
T Consensus 522 n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 522 NIFISELLKLAIED 535 (611)
T ss_pred cHHHHHHHHHHHHh
Confidence 98888887766544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-11 Score=108.57 Aligned_cols=221 Identities=15% Similarity=0.128 Sum_probs=142.1
Q ss_pred cCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChhHH
Q 040136 198 GNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVP---NSVVYQTLIHALSKSNRVSEA 274 (681)
Q Consensus 198 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A 274 (681)
.++.++|...|.+|.+.+ +.+..+-.+|.+.|.+.|.+|.|+++...+.++.--+ ...+...|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888888864 2255666778888888888999998888887652111 112344566778888888999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHHHHHhh
Q 040136 275 LMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDD----ITYGVLMHGLCRTGRVDEARALLNK 350 (681)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 350 (681)
.++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|+.++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99988888754 334566778888888888899999888888877554332 2355555555566667777776666
Q ss_pred cCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040136 351 IPSAN---VVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK 421 (681)
Q Consensus 351 ~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 421 (681)
..+.| +.+--.+.+.+...|+++.|++ .++.+.+.+..--..+...|..+|...|+.++....+..+.+.
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~-~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVE-ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHH-HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 55422 2233334455555566666655 4455554433323344455555566666666665555555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.2e-12 Score=124.14 Aligned_cols=277 Identities=15% Similarity=0.119 Sum_probs=223.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC------CChHHHHHHHHHHHhcCCHHHHHH
Q 040136 304 NRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS------ANVVLLNTVINGYVISGRFDEAKA 377 (681)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~ 377 (681)
=+..+|...|.....+ +.-...+...+..+|...+++++|+++|+.+.+ .+..+|.+.+..+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 3678999999995544 333346778899999999999999999999877 6677888888766433 2333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 378 IFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEP-NIVTYTILVDGFCKEGQLEKANIIINEMLAK 456 (681)
Q Consensus 378 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 456 (681)
.+-+.+.+. .+-.+.+|.++.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 233444443 2446789999999999999999999999999876 44 6788888888888888999999988887664
Q ss_pred CCCCCccccHHHHHHHHHHHHhcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 040136 457 GLSLNTGDRIEEALGLYQDMLLEGVTANTVTYN---TLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNA 533 (681)
Q Consensus 457 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 533 (681)
|+..|+ .+...|.+.++++.|+-.|+++.+.+ |-+......++..+.+.
T Consensus 485 ---------------------------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 485 ---------------------------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQL 536 (638)
T ss_pred ---------------------------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHh
Confidence 555555 46778999999999999999999885 66888888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 534 GAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNSLINGLCKMGCIQEALNL 612 (681)
Q Consensus 534 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 612 (681)
|+.|+|+++++++.....+ |+..--..+..+...+++++|+..++++++. .| +...+..+...|.+.|+.+.|+.-
T Consensus 537 k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 537 KRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred hhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHh
Confidence 9999999999999987655 4444445677788899999999999999984 55 457788889999999999999999
Q ss_pred HHHHHHC
Q 040136 613 FDKLQAE 619 (681)
Q Consensus 613 ~~~~~~~ 619 (681)
|--+.+.
T Consensus 614 f~~A~~l 620 (638)
T KOG1126|consen 614 FSWALDL 620 (638)
T ss_pred hHHHhcC
Confidence 9999885
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-10 Score=115.15 Aligned_cols=450 Identities=16% Similarity=0.136 Sum_probs=231.4
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh
Q 040136 178 VYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVV 257 (681)
Q Consensus 178 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 257 (681)
..|..|+..+|..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .|-..+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 4566677777777777777777777666 6666666655556666777776666666666554 355667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH-HH-------HCC-----------------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 258 YQTLIHALSKSNRVSEALMLLEE-MI-------LMG-----------------CTSDVQTFNDVIHGLCKVNRIHEAAKL 312 (681)
Q Consensus 258 ~~~li~~~~~~~~~~~A~~~~~~-m~-------~~~-----------------~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (681)
|..|..+|...|+... ++..++ |. ..| .-||. ..++....-.|-++.++++
T Consensus 86 yt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred HHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHHHHHH
Confidence 7777777777776543 111111 11 111 11111 1222333334445555554
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHH-hcCCHHHHHHHHhhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q 040136 313 VDRMLVRGFTPDDITYGVLMHGLC-RTGRVDEARALLNKIPS-ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIP 390 (681)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 390 (681)
+..+-..... . ....+++-+. ....+++-..+.....+ +++.++..++..-..+|+.+.|.. +...|.+.|.+.
T Consensus 162 l~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~-ll~emke~gfpi 237 (1088)
T KOG4318|consen 162 LAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKN-LLYEMKEKGFPI 237 (1088)
T ss_pred HhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHH-HHHHHHHcCCCc
Confidence 4443211100 0 1111122222 22334544455444444 777777777777777777777777 677777777777
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHH-----------HHHHHHHCCCC
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANI-----------IINEMLAKGLS 459 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~-----------~~~~~~~~~~~ 459 (681)
+..-|-.++-+ .++...+..+++.|.+.|+.|+..|+...+..+..+|....+.. +...+......
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a 314 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLA 314 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHh
Confidence 76655555543 67777777777777777777777777766665555443222111 11111110000
Q ss_pred CCc--cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcC
Q 040136 460 LNT--GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG---CPLDEITYNGLIKALCNAG 534 (681)
Q Consensus 460 ~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g 534 (681)
... .....-....+.+..-.|......+|...+. ....|.-++..++...+..-- .+.+...|..++.-|.+.-
T Consensus 315 ~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 315 NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 000 0011111122222222233333334433333 223555555555555443211 1112333333333332211
Q ss_pred ----------------------CHHHHHHHHHHHHHC----------------CCCC-------CHHHHHHHHHHHHhcC
Q 040136 535 ----------------------AVDKGLGLFEEMMRK----------------GIKP-------SSISCNILINGLCRTR 569 (681)
Q Consensus 535 ----------------------~~~~A~~~~~~~~~~----------------~~~p-------~~~~~~~l~~~~~~~g 569 (681)
+..+..+........ .+.| -...-+.++..++..-
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 111111111111000 0000 0122244555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 040136 570 KANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE--GIYPDAVTYNTLISWHFKEGLFDDAFLI 647 (681)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 647 (681)
+..+++..-++....-+ + ..|..|++-+......+.|..+.++.... .+..|..-+..+.+.+.+.+...++..+
T Consensus 474 n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ti 550 (1088)
T KOG4318|consen 474 NKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTI 550 (1088)
T ss_pred HHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHH
Confidence 55555554444433211 1 56788888888888888888888887654 2344556677888888899999999999
Q ss_pred HHHHHHC
Q 040136 648 LHKGVAN 654 (681)
Q Consensus 648 ~~~~~~~ 654 (681)
++++.+.
T Consensus 551 L~e~ks~ 557 (1088)
T KOG4318|consen 551 LYEDKSS 557 (1088)
T ss_pred HhhhhHH
Confidence 8888763
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-10 Score=107.33 Aligned_cols=209 Identities=13% Similarity=0.098 Sum_probs=161.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 040136 438 CKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP 517 (681)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 517 (681)
.-.|+.-.|..-|+..++... . +...|-.+..+|....+.++..+.|++....+ |
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~-----------------------~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p 391 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDP-----------------------A-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-P 391 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCc-----------------------c-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-C
Confidence 335666666666666666532 2 33337778888999999999999999999885 6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 518 LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLI 597 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 597 (681)
-|+.+|..=...+.-.+++++|..-|++.++.... +...|-.+..+..+.+++++++..|++.+.+ ++--+..|+-..
T Consensus 392 ~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fA 469 (606)
T KOG0547|consen 392 ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFA 469 (606)
T ss_pred CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHH
Confidence 68888888888888899999999999999986433 5677777778888999999999999999986 665678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-------H--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 040136 598 NGLCKMGCIQEALNLFDKLQAEGIYPD-------A--VTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND-ATWYILV 667 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~ll 667 (681)
+.+...++++.|.+.|+..++. .|. . .+.-.++-.- -.++++.|..++.++.+ +.|.. ..+..|.
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tla 544 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLA 544 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHH
Confidence 9999999999999999999984 444 1 1222222222 33899999999999998 55654 5566777
Q ss_pred HHHHhcCcccc
Q 040136 668 RNLVKEINMES 678 (681)
Q Consensus 668 ~~~~~~g~~~~ 678 (681)
..-...|+.++
T Consensus 545 q~~lQ~~~i~e 555 (606)
T KOG0547|consen 545 QFELQRGKIDE 555 (606)
T ss_pred HHHHHHhhHHH
Confidence 77777776654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-10 Score=103.82 Aligned_cols=296 Identities=16% Similarity=0.141 Sum_probs=191.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 303 VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS-ANVVLLNTVINGYVISGRFDEAKAIFYD 381 (681)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 381 (681)
.++.++|.++|-+|.+.. +-...+..+|.+.|-+.|..|.|+.+...+.. ||. ++..
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl-T~~q-------------------- 105 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL-TFEQ-------------------- 105 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC-chHH--------------------
Confidence 456777777777777641 11233445666666777777777766555433 221 0000
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 382 SMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLN 461 (681)
Q Consensus 382 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 461 (681)
-....-.|..-|...|-+|.|+.+|..+.+.+ .--......|+..|-+..+|++|+++-+++.+.+....
T Consensus 106 ---------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 106 ---------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred ---------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 01122334555666777777777777766543 22344566677777777777777777666665532110
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040136 462 TGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLG 541 (681)
Q Consensus 462 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 541 (681)
. ..-...|..+...+....+.+.|..++.+..+.+ +....+-..+.+.....|+++.|++
T Consensus 176 ~-------------------~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~ 235 (389)
T COG2956 176 R-------------------VEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVE 235 (389)
T ss_pred h-------------------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHH
Confidence 0 0012345556666667788888899888888774 4455566667788888999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040136 542 LFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGI 621 (681)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 621 (681)
.|+.+.+.+..--..+...|..+|...|+.++...++.++.+.. +....-..+.+.-....-.+.|...+.+-+..
T Consensus 236 ~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-- 311 (389)
T COG2956 236 ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR-- 311 (389)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence 99999988655556778888999999999999999999988853 33334444444444444456666666555553
Q ss_pred CCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHC
Q 040136 622 YPDAVTYNTLISWHFK---EGLFDDAFLILHKGVAN 654 (681)
Q Consensus 622 ~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 654 (681)
.|+...+..+++.... .|++.+.+..+++|+..
T Consensus 312 ~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 312 KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 8899888888887643 45677788888888764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-09 Score=100.70 Aligned_cols=282 Identities=13% Similarity=0.099 Sum_probs=165.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 040136 268 SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARAL 347 (681)
Q Consensus 268 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 347 (681)
.|++.+|++++.+-.+.+ +-....|..-+.+....|+.+.+-.++.++.+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 678888888888877766 2334556666677777888888888888877653344555666667777777887777776
Q ss_pred HhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCChhHHHHHHHH
Q 040136 348 LNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVF-------TFNILIHGLCKQRRFGSALELVNA 417 (681)
Q Consensus 348 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------~~~~ll~~~~~~~~~~~A~~~~~~ 417 (681)
++++.. .++........+|.+.|++.+... +...+.+.+.-.|.. +|..++.-....+..+.-...++.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~-~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA-ILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHH-HHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 665544 556666667777777777777777 667777766554442 334444433333333333334444
Q ss_pred HHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 040136 418 MAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLR 497 (681)
Q Consensus 418 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 497 (681)
.... .+-++..-..++.-+.++|+.++|.++..+..+++. |.. . ...-.+.+
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-------------------------D~~-L-~~~~~~l~ 306 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW-------------------------DPR-L-CRLIPRLR 306 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-------------------------Chh-H-HHHHhhcC
Confidence 3322 223444445555556666666666666665555431 111 1 11112344
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 498 RGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEF 577 (681)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 577 (681)
.++...-++..++..+. .+.++..+.+|+..|.+.+.+.+|...|+..++. .|+..+|+.+.+++.+.|+..+|.++
T Consensus 307 ~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 307 PGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred CCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHH
Confidence 45555555555554444 2444455666666666666666666666655553 45666666666666666666666666
Q ss_pred HHHHH
Q 040136 578 LRDMI 582 (681)
Q Consensus 578 ~~~~~ 582 (681)
.++.+
T Consensus 384 r~e~L 388 (400)
T COG3071 384 RREAL 388 (400)
T ss_pred HHHHH
Confidence 65554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-08 Score=101.17 Aligned_cols=460 Identities=15% Similarity=0.110 Sum_probs=234.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040136 151 LFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKAL 230 (681)
Q Consensus 151 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 230 (681)
.|..+++.| ..+++...+++.+.+...+ +....+.....-.+...|+-++|......-++.++. +.+.|.++.-.+
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHH
Confidence 344555555 5566666666666666322 233333333333445566677777766666665433 455666665555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 231 CMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAA 310 (681)
Q Consensus 231 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 310 (681)
....++++|++.|......+ +.|...+.-+.-.-++.++++.....-..+.+.. +.....|..++.++.-.|++..|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777665 5556666666666666666666666555555432 334556666666777777777777
Q ss_pred HHHHHHHHCC-CCCCcccHHHHH------HHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 311 KLVDRMLVRG-FTPDDITYGVLM------HGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFY 380 (681)
Q Consensus 311 ~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 380 (681)
.++++..+.. ..|+...+.... ....+.|..++|.+.+..... .....--+-...+.+.++.++|.. ++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~-~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVK-VY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHH-HH
Confidence 7777776543 234444443222 233455666666666555443 112222333455666777777777 55
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH-hcCChhHHH-HHHHHHHhcCCCcCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 381 DSMLSVGCIPDVFTFNILIHGLC-KQRRFGSAL-ELVNAMAVKGCEPNIVT-YTILVDGFCKEGQLEKANIIINEMLAKG 457 (681)
Q Consensus 381 ~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~A~-~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 457 (681)
..+... .||...|...+..+. +..+.-++. .+|....+. .|.... -..=+.......-.+....++...+++|
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 555543 355555544443333 233333333 444433332 111000 0000111111111222233344444443
Q ss_pred CCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CCCCCHHHH
Q 040136 458 LSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR--------------GCPLDEITY 523 (681)
Q Consensus 458 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~~~~ 523 (681)
+++ ++..+...|-.....+-..++...+... --+|....|
T Consensus 319 ~p~--------------------------vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW 372 (700)
T KOG1156|consen 319 VPS--------------------------VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW 372 (700)
T ss_pred CCc--------------------------hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHH
Confidence 321 1222222221111111111111111100 014555444
Q ss_pred H--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 524 N--GLIKALCNAGAVDKGLGLFEEMMRKGIKPSS-ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 524 ~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
. .+...+-+.|+++.|..+.+.++.. .|+. ..|..=.+.+...|++++|..++++..+.+ .+|...-..-..-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHH
Confidence 3 3455566777777777777777764 3442 445555667777777777777777777653 34544433555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH--------HHHH--HHHHHHhcCChhHHHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQAEGIYPDAV--------TYNT--LISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~~~p~~~--------~~~~--l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
.++++.++|.++.....+.|. +.. .|.. -+.+|.+.|++-+|++=|..+.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 677777777777777776653 211 2222 2245666677666665444433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9e-10 Score=100.69 Aligned_cols=157 Identities=12% Similarity=0.033 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 501 LHEAHKLVNDMLFRGCPLD-EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLR 579 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 579 (681)
..-|.+.|...-+.+..-| ..-..++...+.-..++++.+.+++.+...-...|...+ .+..+++..|++.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 4556666665555443333 233456666677777889999988888876544455554 46788999999999999998
Q ss_pred HHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHCCCC
Q 040136 580 DMIHRGLTPDIVTYN-SLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNT-LISWHFKEGLFDDAFLILHKGVANGFV 657 (681)
Q Consensus 580 ~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g~~ 657 (681)
++....++ |..+|. .|..+|.+.+..+.|..++-++-. +.+..+... +..-|.+.+.+--|-+.|+.+.. ..
T Consensus 418 ~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lD 491 (557)
T KOG3785|consen 418 RISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LD 491 (557)
T ss_pred hhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cC
Confidence 87765444 445554 566788899999988877765542 334444444 44668899998888888888876 56
Q ss_pred CCHHHHH
Q 040136 658 PNDATWY 664 (681)
Q Consensus 658 ~~~~~~~ 664 (681)
|++..|.
T Consensus 492 P~pEnWe 498 (557)
T KOG3785|consen 492 PTPENWE 498 (557)
T ss_pred CCccccC
Confidence 8877775
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.9e-10 Score=103.32 Aligned_cols=186 Identities=13% Similarity=0.141 Sum_probs=126.7
Q ss_pred HHHHHHH--hcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 040136 190 VVLDVLV--AGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSK 267 (681)
Q Consensus 190 ~ll~~~~--~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 267 (681)
.+..++. -.|++.+|.+...+-.+.+..| ...|..-..+--..|+.+.+-.++.++.+.--.++...+-+..+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 3444443 4688999999988877766443 345666677777889999999999998886335667777788888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc-------cHHHHHHHHHhcCC
Q 040136 268 SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDI-------TYGVLMHGLCRTGR 340 (681)
Q Consensus 268 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~ 340 (681)
.|+++.|..-+.++.+.+ +.+.........+|.+.|++.....++..+.+.|.--|.. +|..+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999998888888876 5567778888899999999999999999999887654432 34444444444444
Q ss_pred HHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHH
Q 040136 341 VDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKA 377 (681)
Q Consensus 341 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 377 (681)
.+.-...++..+. .++..-..++.-+.+.|+.++|.+
T Consensus 245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHH
Confidence 4444444444443 334444444444444444444444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-08 Score=99.53 Aligned_cols=469 Identities=12% Similarity=0.050 Sum_probs=236.2
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATR 170 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 170 (681)
.+.+...+.+.+......+ -..++.....-.+...|+-++|..........++. +...|-.+.-.+....++++|++
T Consensus 20 ~kQYkkgLK~~~~iL~k~~--eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFP--EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhCC--ccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 4556666666666555332 33333333333455556666666666665555442 44455555555555566666666
Q ss_pred HHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040136 171 LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHG 250 (681)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 250 (681)
.|.... ..+ +.|...|.-+.-.-++.++++.....-.++++.. +-....|..+..+..-.|+...|..+++...+..
T Consensus 97 cy~nAl-~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 97 CYRNAL-KIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHH-hcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666655 222 4445555544444455555555555555555542 1123345555555555566666666665555432
Q ss_pred -CCCChhhHHHHHHH------HHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 251 -CVPNSVVYQTLIHA------LSKSNRVSEALMLLEEMILMGCTSDVQT-FNDVIHGLCKVNRIHEAAKLVDRMLVRGFT 322 (681)
Q Consensus 251 -~~~~~~~~~~li~~------~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (681)
-.|+...+.-.... ..+.|..+.|++.+..-... ..|... -..-...+.+.+++++|..++..++.. .
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--n 249 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--N 249 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--C
Confidence 12444444332222 22344445554444433221 112221 122333444555555555555555544 3
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH-HHHH
Q 040136 323 PDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNI-LIHG 401 (681)
Q Consensus 323 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-ll~~ 401 (681)
||...|..... .++.+-.+.-+++..++....+.- |-...-.. =+..
T Consensus 250 Pdn~~Yy~~l~------------------------------~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsv 297 (700)
T KOG1156|consen 250 PDNLDYYEGLE------------------------------KALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSV 297 (700)
T ss_pred chhHHHHHHHH------------------------------HHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHH
Confidence 33333332222 222222223333322444333321 11100000 0111
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCccccHHHHHHHHHHHHh
Q 040136 402 LCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLA---KGLSLNTGDRIEEALGLYQDMLL 478 (681)
Q Consensus 402 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~ 478 (681)
.....-.+..-.++..+.+.|+++ ++..+...|-.-...+ +++++.. .+..........+.-
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~-------- 362 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDG-------- 362 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCccccc--------
Confidence 111222334445566666667554 2333333332211111 2222211 111111000000000
Q ss_pred cCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 479 EGVTANTVT--YNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 479 ~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
..-+|.+.. +--++..|-+.|+++.|...++..+.+ .|.-...|..=...+...|++++|..++++..+.+ .+|..
T Consensus 363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~ 440 (700)
T KOG1156|consen 363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRA 440 (700)
T ss_pred ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHH
Confidence 001445544 455778889999999999999999987 23334455556688899999999999999999875 34665
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLT--PD----IVTYNSL--INGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.-.--+....++.+.++|.++.......|.. -+ .-+|-.+ ..+|.+.|++..|++-|..+.+
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 5556677778899999999999998887641 01 1223332 4567788888888776665544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-08 Score=91.30 Aligned_cols=449 Identities=10% Similarity=0.027 Sum_probs=243.1
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATR 170 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 170 (681)
++|+.-|..+++.... .+-.-...+-.++..++.+.|++++|...+.-+.+..- ++...+..|.-++.-.|.+.+|..
T Consensus 35 ~rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~-~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD-APAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC-CCcccchhHHHHHHHHHHHHHHHH
Confidence 4699999999988543 23233345566777888999999999999998877553 566777788888888899999988
Q ss_pred HHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040136 171 LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHG 250 (681)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 250 (681)
+-.... .++..-..+...-.+.|+-++-..+-+.+.+. ..--.+|.......-.+++|++++..+...+
T Consensus 113 ~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 113 IAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 876554 34444455566666777776666665554432 2223344444444556889999999988765
Q ss_pred CCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 040136 251 CVPNSVVYQTL-IHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYG 329 (681)
Q Consensus 251 ~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (681)
|+-...|.. .-+|.+..-++-+.++++-..+. ++.+..+.|..+....+.=.-..|++-...+...+-. .|
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~- 253 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EY- 253 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cc-
Confidence 555555543 34567777788888888877765 2334555555554444433333344444444433211 01
Q ss_pred HHHHHHHhcC-----CHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-
Q 040136 330 VLMHGLCRTG-----RVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLC- 403 (681)
Q Consensus 330 ~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~- 403 (681)
-.+.-+++.+ .-+.|++++-.+...-+.+.-.|+--|.+.++..+|.. +.+.+. ...|-......+..+-.
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~-L~Kdl~--PttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAIS-LCKDLD--PTTPYEYILKGVVFAALG 330 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHH-HHhhcC--CCChHHHHHHHHHHHHhh
Confidence 1222223322 23555665554444334444555556777777777777 433221 11122222222221111
Q ss_pred ----hcCChhHHHHHHHHHHhcCCCcCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHh
Q 040136 404 ----KQRRFGSALELVNAMAVKGCEPNI-VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLL 478 (681)
Q Consensus 404 ----~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 478 (681)
....+.-|.+.|+..-+.+..-|. .--..+...+.-..++++.+..++.+..-
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY---------------------- 388 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY---------------------- 388 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 111233444555444444333222 12233333333444455554444443332
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-H
Q 040136 479 EGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNG-LIKALCNAGAVDKGLGLFEEMMRKGIKPSS-I 556 (681)
Q Consensus 479 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~ 556 (681)
-.. |...-..+..+++..|++.+|.++|-.+....+. |..+|.+ |..+|.+.+.++.|+.++-.+-.. .+. .
T Consensus 389 -F~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fs 462 (557)
T KOG3785|consen 389 -FTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFS 462 (557)
T ss_pred -hcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHH
Confidence 111 2222233556666677777777776655443322 3444433 345566666666666554433221 122 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTY 593 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 593 (681)
....+.+-|.+.+.+--|-+.|+.+.. ..|++..|
T Consensus 463 LLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 463 LLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 233444556666666666666665554 34555444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-11 Score=108.09 Aligned_cols=233 Identities=12% Similarity=0.072 Sum_probs=185.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHH
Q 040136 396 NILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQD 475 (681)
Q Consensus 396 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 475 (681)
+.+.++|.+.|.+.+|.+.++..+++ .|-+.+|-.|-..|.+..++..|+.++.+.++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~------------------- 285 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS------------------- 285 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-------------------
Confidence 56778888888888888888888776 566777888888888888888888888887765
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 476 MLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS 555 (681)
Q Consensus 476 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 555 (681)
++-|+.....+...+-..++.++|.++|+...+.. +.+.....++...|...++++-|+.+|+++++.|+. +.
T Consensus 286 -----fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-sp 358 (478)
T KOG1129|consen 286 -----FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SP 358 (478)
T ss_pred -----CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-Ch
Confidence 12244444456677778888999999999988874 667777778888888889999999999999998876 88
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPD--IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 633 (681)
..|+.+.-+|...++++-++.-|++.+..-..|+ ..+|-.+.......||+..|.+.|+-....+ .-+...++.|.-
T Consensus 359 eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLav 437 (478)
T KOG1129|consen 359 ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAV 437 (478)
T ss_pred HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHH
Confidence 8888888888889999999999988887544444 3668788888888999999999999888763 334678888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC
Q 040136 634 WHFKEGLFDDAFLILHKGVANGFVPN 659 (681)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~g~~~~ 659 (681)
.-.+.|+.++|..++..+.. ..|+
T Consensus 438 L~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 438 LAARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred HHhhcCchHHHHHHHHHhhh--hCcc
Confidence 88899999999999988876 4454
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-08 Score=93.73 Aligned_cols=274 Identities=16% Similarity=0.114 Sum_probs=183.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------
Q 040136 389 IPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPN-IVTYTILVDGFCKEGQLEKANIIINEMLAKG---------- 457 (681)
Q Consensus 389 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---------- 457 (681)
+-|......+...+...|+.+.|...|++.... .|+ +.......-.+.+.|+++....+...+....
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 334445555555555555555555555554433 121 1111111222334444444444444433321
Q ss_pred -CCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 040136 458 -LSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAV 536 (681)
Q Consensus 458 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 536 (681)
.......+.+.|+.+-.+.++.... +...|..-..++...|++++|.-.|+..+... |-+...|..|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 1111144555555555555554322 55566666678889999999999999988763 56889999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 040136 537 DKGLGLFEEMMRKGIKPSSISCNILI-NGLCR-TRKANTALEFLRDMIHRGLTPDI-VTYNSLINGLCKMGCIQEALNLF 613 (681)
Q Consensus 537 ~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 613 (681)
.+|..+-+...+. +..+..+.+.+. ..+.. -..-++|.+++++.+. +.|+. ...+.+...|...|..++++.++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 9999888877765 344666666653 33332 2335789999998876 46764 56778888899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 614 DKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKE 673 (681)
Q Consensus 614 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 673 (681)
++... ..||....+.|.+.+...+.+++|...|..+++ +.|+......=++.+-|+
T Consensus 462 e~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 462 EKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHhc
Confidence 99998 489999999999999999999999999999997 567765544444444444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.3e-08 Score=99.48 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=39.7
Q ss_pred HHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040136 600 LCKMG-CIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHK 650 (681)
Q Consensus 600 ~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (681)
+.+.. =+++|.++++-+.+.+ ..+..+|..-...|.+.|++--|++.+.+
T Consensus 466 L~~t~dPLe~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 33444 4688999999999863 44677999999999999999999887765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-07 Score=85.07 Aligned_cols=196 Identities=15% Similarity=0.118 Sum_probs=139.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHH
Q 040136 398 LIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDML 477 (681)
Q Consensus 398 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 477 (681)
-+......+++..|+.+-++..+.. +-++..|-.-...+...++.++|.-.|+......
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-------------------- 364 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-------------------- 364 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------------------
Confidence 3344456677888888877777653 2244555555566777888888888887776542
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCCH
Q 040136 478 LEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLI-KALCN-AGAVDKGLGLFEEMMRKGIKPSS 555 (681)
Q Consensus 478 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~ 555 (681)
+-+..+|..|+++|...|+..+|..+-+..... .+.+..+...+. ..+.- ..--++|..+++..++. .|+.
T Consensus 365 ----p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y 437 (564)
T KOG1174|consen 365 ----PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY 437 (564)
T ss_pred ----hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence 226678888888888888888888777776655 355666665553 22221 22247788888877764 4543
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 556 -ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 556 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
...+.+...+...|+.++++.++++.+. ..||....+.|.+.+...+.+++|...|..+.. +.|+.
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 4556777888888999999999998886 468888888999999999999999999988887 45654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-09 Score=102.82 Aligned_cols=200 Identities=16% Similarity=0.119 Sum_probs=148.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 427 IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 427 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------------------------p~~~~~~~~la~~~~~~~~~~~A~~ 86 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD------------------------PDDYLAYLALALYYQQLGELEKAED 86 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666777777888888877777766542 2245667777778888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 507 LVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-KPSSISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
.+++..+.. +.+...+..+...+...|++++|...++++.+... ......+..+...+...|++++|.+.+++..+..
T Consensus 87 ~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 87 SFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888877763 45666777778888888888888888888876422 2234566677788888888888888888888752
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 586 LTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|+.++|..+.+.+.+
T Consensus 166 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 166 -PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred -cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 234567777888888888898888888888875 244556666777888888888888888877765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-08 Score=99.88 Aligned_cols=448 Identities=13% Similarity=0.037 Sum_probs=226.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhH
Q 040136 109 GYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSY 188 (681)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 188 (681)
.+..++..|..+.-++.+.|++..+-+.|++....-+ .....|..+...|..+|.-..|..+++.-......++++..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3445677777777777777777777777777765443 255667777777777777777777776654222112233333
Q ss_pred HHHHHHHH-hcCCcCcHHHHHHHHHHC--CC--CCChhhHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCC
Q 040136 189 NVVLDVLV-AGNCHKVAPNLFYDMLSK--GI--SPTVYTFGVVMKALCMV-----------NEVDSACSLLRDMTKHGCV 252 (681)
Q Consensus 189 ~~ll~~~~-~~~~~~~A~~~~~~m~~~--~~--~p~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 252 (681)
-..-..|. +.+..++++.+-.+.+.. +. ......|..+.-+|... -...++.+.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 33333333 345666666666665552 11 11222333333333211 12345666666666654 2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 040136 253 PNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLM 332 (681)
Q Consensus 253 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (681)
.|+.+.-.+.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....- .-|-.....-+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 33333333444566677777777777777776545667777777777777777777777777666431 11111122222
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 040136 333 HGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSAL 412 (681)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~ 412 (681)
+.-..-++.++++.....+.. .|... ......++-....+ ....+.-. + ++..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~-lk~~l~la---~---------------~q~~~-- 608 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLLR-LKAGLHLA---L---------------SQPTD-- 608 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhhh-hhcccccC---c---------------ccccc--
Confidence 223334555555554433221 00000 00000011001111 10000000 0 00000
Q ss_pred HHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040136 413 ELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLI 492 (681)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 492 (681)
.+.++..+.......+ +.+..-.. +......+.....+.. ....|....
T Consensus 609 -------------a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~---------------~~~lwllaa 657 (799)
T KOG4162|consen 609 -------------AISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYL---------------LQKLWLLAA 657 (799)
T ss_pred -------------cchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHH---------------HHHHHHHHH
Confidence 1111111111111000 00000000 0000000000000000 022344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 493 HAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKAN 572 (681)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 572 (681)
..+.+.+..++|.-.+.+.... .+..+..|......+...|...+|.+.|..+...++. ++.+..++..++.+.|+..
T Consensus 658 ~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 658 DLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPR 735 (799)
T ss_pred HHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcc
Confidence 5566666777776666666555 3556666666666777777777777777777765322 4456667777777777766
Q ss_pred HHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 573 TALE--FLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 573 ~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
-|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|.+.|....+.
T Consensus 736 la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6666 777777653 335677777777777777777777777777664
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-07 Score=93.15 Aligned_cols=124 Identities=13% Similarity=0.044 Sum_probs=80.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 040136 154 LIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMV 233 (681)
Q Consensus 154 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 233 (681)
.=++.+...|++++|.+...++. .. .+.+...+..-+-++++.+.+++|+.+.+.-... ..+..-+---..+..+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil-~~-~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKIL-SI-VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHH-hc-CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 34566778888888888888888 33 3666777778888888888888888554432211 11111111112333477
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 234 NEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMG 285 (681)
Q Consensus 234 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 285 (681)
+..|+|...+.-..+ .+..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 93 nk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred ccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 888888888872221 223355556677788888888888888887765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-08 Score=103.89 Aligned_cols=287 Identities=14% Similarity=0.121 Sum_probs=200.3
Q ss_pred HHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC--
Q 040136 86 KLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG-- 163 (681)
Q Consensus 86 ~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 163 (681)
.++...|++++|++++..... -+......+...+..+.+.|+.++|..++..+++.++ .+...|..+..+.+-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 466778999999999977332 3445566778888999999999999999999999996 36666667777663332
Q ss_pred ---ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCc-CcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHH
Q 040136 164 ---VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCH-KVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSA 239 (681)
Q Consensus 164 ---~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 239 (681)
..+...++|+.+...+ |.......+.-.+.....+ ..+...+..++..|+++ +|..+-..|......+-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 5677788888887432 3222222221111221222 34556677778888763 556665556544555555
Q ss_pred HHHHHHHHhC----C----------CCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 240 CSLLRDMTKH----G----------CVPNS--VVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKV 303 (681)
Q Consensus 240 ~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 303 (681)
.+++..+... + -+|.. .++..+...|-..|++++|++.+++.++.. +..+..|..-...+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 5555555432 1 12444 344566777889999999999999999874 33477888888999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChH----------HH--HHHHHHHHhcCC
Q 040136 304 NRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVV----------LL--NTVINGYVISGR 371 (681)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~g~ 371 (681)
|++++|.+.++........ |...-+..+..+.+.|++++|.+++......+.. .| .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999877433 6667777888889999999999999888774411 22 344678889999
Q ss_pred HHHHHHHHHHHHH
Q 040136 372 FDEAKAIFYDSML 384 (681)
Q Consensus 372 ~~~a~~~~~~~~~ 384 (681)
+..|++ .+..+.
T Consensus 321 ~~~ALk-~~~~v~ 332 (517)
T PF12569_consen 321 YGLALK-RFHAVL 332 (517)
T ss_pred HHHHHH-HHHHHH
Confidence 999888 444443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-07 Score=96.12 Aligned_cols=131 Identities=14% Similarity=-0.008 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 040136 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLIN 598 (681)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 598 (681)
...|......+.+.+..++|...+.++.+.. .-....|......+...|..++|.+.|...... .|+ .....++..
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHH
Confidence 3456667778888899999998888887753 335677888888899999999999999998874 554 577889999
Q ss_pred HHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 599 GLCKMGCIQEALN--LFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 599 ~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
++.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.++|.+.|..+.+.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999998888877 999999864 556889999999999999999999999999873
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.6e-07 Score=95.06 Aligned_cols=549 Identities=13% Similarity=0.145 Sum_probs=296.2
Q ss_pred ChhHHhhhcCCCCHHHHHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc-C--
Q 040136 68 DLNELRKSLHKITPFQLCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEE-G-- 144 (681)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-- 144 (681)
|+.+...+.+.++|.-+..-+.. -.++.+++.+..++. .+++.+......+..-|..+=..+...++|+....- |
T Consensus 634 DIKR~vVhth~L~pEwLv~yFg~-lsve~s~eclkaml~-~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~ 711 (1666)
T KOG0985|consen 634 DIKRVVVHTHLLNPEWLVNYFGS-LSVEDSLECLKAMLS-ANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLY 711 (1666)
T ss_pred HHHHHHHHhccCCHHHHHHHHHh-cCHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHH
Confidence 44555556667777665554443 366777777777654 344555555555555555554555555666654431 1
Q ss_pred --------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHcH--------------------------hhcCCCCCHHhHH-
Q 040136 145 --------IICRESLFILIMKYYGRGGVPGQATRLLLDMK--------------------------SVYGCQPTFRSYN- 189 (681)
Q Consensus 145 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------------~~~~~~~~~~~~~- 189 (681)
...++.+....+.+.++.|+..+..++.++-. .++++-+|...|-
T Consensus 712 yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLy 791 (1666)
T KOG0985|consen 712 YFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 791 (1666)
T ss_pred HHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHH
Confidence 34567777888888888888887777654321 1122222322221
Q ss_pred -----HHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHH------------HHhcCChhHHHHHHHHHHhCCCC
Q 040136 190 -----VVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKA------------LCMVNEVDSACSLLRDMTKHGCV 252 (681)
Q Consensus 190 -----~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~------------~~~~g~~~~A~~~~~~~~~~~~~ 252 (681)
-.|..|++.=++...-.+...++..+.. ....-+.++.. .-+.++..--...++.....| .
T Consensus 792 rnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~-E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~ 869 (1666)
T KOG0985|consen 792 RNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCS-EDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-S 869 (1666)
T ss_pred HhhHHHHHHHHHhhcCCcccchhhhhhhcCCCc-HHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-C
Confidence 1234444444444444444444333221 11222222221 223344444444555555555 3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCcccH
Q 040136 253 PNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLV----RGFTPDDITY 328 (681)
Q Consensus 253 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 328 (681)
.+..++|+|...|...++-.+-. .+ -+...=+..+.-||..+++..|.-.+++-.. .++......|
T Consensus 870 ~d~a~hnAlaKIyIDSNNnPE~f------Lk----eN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlf 939 (1666)
T KOG0985|consen 870 QDPATHNALAKIYIDSNNNPERF------LK----ENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLF 939 (1666)
T ss_pred cchHHHhhhhheeecCCCChHHh------cc----cCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHH
Confidence 45566666666665544322110 00 0111111122223332222211111110000 0000011122
Q ss_pred HHHHHHHHhcCCHHHHHH-----------HHhhcCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CC-
Q 040136 329 GVLMHGLCRTGRVDEARA-----------LLNKIPS------ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVG-CI- 389 (681)
Q Consensus 329 ~~l~~~~~~~g~~~~A~~-----------~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~- 389 (681)
....+.+.+..+.+-=.+ +.+++.+ .|+...+.-+.+++..+-..+.++ +++.+.-.+ .-
T Consensus 940 K~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE-LLEKIvL~~S~Fs 1018 (1666)
T KOG0985|consen 940 KSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE-LLEKIVLDNSVFS 1018 (1666)
T ss_pred HHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH-HHHHHhcCCcccc
Confidence 223333333333222111 1122111 555666666777777777777777 555444322 11
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCcccc
Q 040136 390 PDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGL----SLNTGDR 465 (681)
Q Consensus 390 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~ 465 (681)
-+...-+.++-...+. +.....+..+++.... .|+ +.......+-+++|..+|+..-..+. ....-+.
T Consensus 1019 e~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ 1090 (1666)
T KOG0985|consen 1019 ENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGS 1090 (1666)
T ss_pred cchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhh
Confidence 1122223333333332 3344444444443321 112 23334445556666666655322110 0011234
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040136 466 IEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEE 545 (681)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 545 (681)
++.|.+.-++.- .+..|..+..+-.+.|...+|++-|-+ ..|+..|..+++...+.|.+++-..++..
T Consensus 1091 ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1091 LDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred HHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 444444443332 567899999999999999999887754 23777899999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 546 MMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 546 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
+.++.-+|.+.+ .|+-+|++.++..+-.+++ ..||......+.+-|...|.++.|.-++.. .
T Consensus 1159 aRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------v 1220 (1666)
T KOG0985|consen 1159 ARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------V 1220 (1666)
T ss_pred HHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------h
Confidence 888877776664 7888899999987765544 358888888899999999999988776653 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 040136 626 VTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEIN 675 (681)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 675 (681)
..|..|...+...|.+..|....+++ .+..||.-+-.+|...+.
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhh
Confidence 45788888899999998888776655 356788888777776543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-09 Score=115.25 Aligned_cols=149 Identities=11% Similarity=-0.037 Sum_probs=66.8
Q ss_pred hHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 040136 165 PGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLR 244 (681)
Q Consensus 165 ~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 244 (681)
.++|...+++.. ... +.+...+..+...+...|++++|...|++.++.+. .+...+..+...+...|++++|...++
T Consensus 320 ~~~A~~~~~~Al-~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKAT-ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445555555544 221 23344444444445555555555555555555431 123344444455555555555555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 245 DMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML 317 (681)
Q Consensus 245 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (681)
+..+.+ +.+...+..++..+...|++++|...++++.+...+.+...+..+...+...|+.++|...+.++.
T Consensus 397 ~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 397 ECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 555443 112222222233344445555555555554433211123333444444445555555555554443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-09 Score=106.57 Aligned_cols=246 Identities=19% Similarity=0.164 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----CC-CcCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc
Q 040136 392 VFTFNILIHGLCKQRRFGSALELVNAMAVK-----GC-EPNIV-TYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGD 464 (681)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 464 (681)
..+...+...|...|+++.|..+++...+. |. .|.+. ..+.+...|...+++++|..+|++++.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~--------- 269 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT--------- 269 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH---------
Confidence 345566888899999999999998887654 21 22222 334467788999999999999877654
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHHcCCHH
Q 040136 465 RIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR-----GC-PLDE-ITYNGLIKALCNAGAVD 537 (681)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~ 537 (681)
+++.......+.-..+++.|..+|.+.|++++|...++.+.+. +. .+.. ..++.+...|+..++++
T Consensus 270 -------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 270 -------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred -------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence 3444433333334567788888999999999988887776542 11 1222 24566677888999999
Q ss_pred HHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhc
Q 040136 538 KGLGLFEEMMRK---GIKPS----SISCNILINGLCRTRKANTALEFLRDMIHR----GL--TP-DIVTYNSLINGLCKM 603 (681)
Q Consensus 538 ~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~ 603 (681)
+|..+++...+. -+.++ ..+++.|...|...|++++|.+++++++.. +. .+ ....++.+...|.+.
T Consensus 343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~ 422 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL 422 (508)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh
Confidence 999999987653 12222 367899999999999999999999998863 11 22 245678899999999
Q ss_pred CCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 604 GCIQEALNLFDKLQAE----GI-YPD-AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 604 g~~~~A~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+++.+|.++|.+...- |. .|+ ..+|..|+..|...|++++|.++.+.+..
T Consensus 423 k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 423 KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred cccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9999999988876543 21 333 45888999999999999999999988874
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-09 Score=99.39 Aligned_cols=200 Identities=16% Similarity=0.066 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHH
Q 040136 392 VFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALG 471 (681)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 471 (681)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 4556666777777888888888887776653 3345667777777888888888888877776642
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 472 LYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC-PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
+.+...+..+...+...|++++|.+.+++...... +.....+..+...+...|++++|...+++..+..
T Consensus 96 ----------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 96 ----------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred ----------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22455667777778888888888888888776421 2344566677778888888899988888888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 551 IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 551 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
. .+...+..+...+...|++++|.+.+++..+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 166 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 166 P-QRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred c-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 2 24567778888888889999999888888775 344566666777778888888888888887765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-09 Score=112.60 Aligned_cols=249 Identities=12% Similarity=0.056 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCC
Q 040136 372 FDEAKAIFYDSMLSVGCIPDVFTFNILIHGLC---------KQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQ 442 (681)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 442 (681)
.++|++ +++...+.. +-+...|..+..++. ..+++++|...+++..+.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~-~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALK-LLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHH-HHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 445666 445444432 113334444443332 2344778888888888763 3356677777777888888
Q ss_pred HHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 040136 443 LEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEIT 522 (681)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 522 (681)
+++|...|+++++.+ +.+...+..+..++...|++++|...++++.+.. |.+...
T Consensus 354 ~~~A~~~~~~Al~l~------------------------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~ 408 (553)
T PRK12370 354 YIVGSLLFKQANLLS------------------------PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAA 408 (553)
T ss_pred HHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhh
Confidence 888888888887764 2256677778888888888998988888888774 334334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 040136 523 YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLINGLC 601 (681)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 601 (681)
+..++..+...|++++|+..++++.+...+-+...+..+..++...|+.++|...++++... .|+ ....+.+...++
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 44445556678888888888888876532224555677778888889999998888887653 333 344555556666
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 602 KMGCIQEALNLFDKLQAE-GIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANG 655 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 655 (681)
..| ++|...++.+.+. ...+....+ +...+.-.|+.+.+..+ +++.+.|
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 4777777776654 112222222 33334445665555555 7776543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-07 Score=89.87 Aligned_cols=463 Identities=11% Similarity=0.071 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHH--HH
Q 040136 115 DVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNV--VL 192 (681)
Q Consensus 115 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--ll 192 (681)
..+..=++.....|++++|.+...++...++ .+..++..-+.++.+.+++++|+.+.+.-. -..+++. +=
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~-------~~~~~~~~~fE 84 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNG-------ALLVINSFFFE 84 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcc-------hhhhcchhhHH
Confidence 4455567778899999999999999999884 577778777888889999999996655432 1122222 23
Q ss_pred HHHH--hcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcC
Q 040136 193 DVLV--AGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALS-KSN 269 (681)
Q Consensus 193 ~~~~--~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~ 269 (681)
.+|| +.|..++|+..++-..+ .+..+...-...+.+.|++++|..+|+.+.+.+. ++ +...+++-+ ..+
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVA 156 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHH
Confidence 4444 78999999999882222 2445677777888999999999999999988762 22 222222111 111
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 040136 270 RVSEALMLLEEMILMGCTSDVQTFNDV---IHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARA 346 (681)
Q Consensus 270 ~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 346 (681)
-...+ ++++... ..| ..+|..+ ...+...|++.+|+++++.....+..- +. .++.. -.+
T Consensus 157 a~l~~-~~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-----------l~-~~d~~-eEe 218 (652)
T KOG2376|consen 157 AALQV-QLLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREK-----------LE-DEDTN-EEE 218 (652)
T ss_pred HhhhH-HHHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-----------hc-ccccc-hhh
Confidence 11111 1222222 222 2344433 344567899999999999884432110 00 00000 000
Q ss_pred HHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCChhH--HHHHHHHHHhc
Q 040136 347 LLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIH---GLCKQRRFGS--ALELVNAMAVK 421 (681)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~---~~~~~~~~~~--A~~~~~~~~~~ 421 (681)
+-.+ =..+...|...+...|+.++|.+ ++....+.. ++|........+ +...-.++-+ ++..++.....
T Consensus 219 ie~e----l~~IrvQlayVlQ~~Gqt~ea~~-iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~ 292 (652)
T KOG2376|consen 219 IEEE----LNPIRVQLAYVLQLQGQTAEASS-IYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK 292 (652)
T ss_pred HHHH----HHHHHHHHHHHHHHhcchHHHHH-HHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH
Confidence 0000 00112223344555666666666 555554433 223322111111 1111111111 11111111110
Q ss_pred -----------CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHH
Q 040136 422 -----------GCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNT 490 (681)
Q Consensus 422 -----------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 490 (681)
.-...+.--+.++..|. +..+.+.++..... +..|. ..+..
T Consensus 293 l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp-------------------------~~~p~-~~~~~ 344 (652)
T KOG2376|consen 293 LAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP-------------------------GMSPE-SLFPI 344 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC-------------------------ccCch-HHHHH
Confidence 00001111112222221 11222222111110 11122 22223
Q ss_pred HHHH-HH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHH
Q 040136 491 LIHA-FL-RRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFE--------EMMRKGIKPSSISCNI 560 (681)
Q Consensus 491 li~~-~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~ 560 (681)
++.. .. +...+..+.+++...-+....-...+....+......|+++.|.+++. .+.+.+..|.. ...
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~a 422 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGA 422 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHH
Confidence 3322 21 222456666666665554211123344455555667777777777777 44443444433 344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 561 LINGLCRTRKANTALEFLRDMIHR--GLTPDI----VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
+...+.+.++-+.|..++.+.... .-.+.. .++..+...-.+.|+-++|..+++++.+.+ ++|..+...++.+
T Consensus 423 iv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 423 IVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTA 501 (652)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHH
Confidence 555666666655566666555432 011111 223333334446677788888888887753 5566777777777
Q ss_pred HHhcCChhHHHHHHH
Q 040136 635 HFKEGLFDDAFLILH 649 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~ 649 (681)
|++. +.+.|..+-+
T Consensus 502 ~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 502 YARL-DPEKAESLSK 515 (652)
T ss_pred HHhc-CHHHHHHHhh
Confidence 7765 3455555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.7e-10 Score=102.09 Aligned_cols=223 Identities=14% Similarity=0.064 Sum_probs=112.7
Q ss_pred HHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 040136 191 VLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNR 270 (681)
Q Consensus 191 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 270 (681)
+..+|.+.|.+.+|.+.|+.-+.. .|-+.||..|-++|.+..++..|+.++.+-.+. +|-|+....-+.+.+-..++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 444555555555555555554443 334445555555555555555555555555443 23333333444555555555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhh
Q 040136 271 VSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNK 350 (681)
Q Consensus 271 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 350 (681)
.++|.++++...+.. +.++.....+...|.-.++++-|+.++++++..|+. +...|+.+.-+|.-.+++|-++..|++
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 555555555555443 334444444555555555555666666655555544 445555555555555555555555544
Q ss_pred cCC----CC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040136 351 IPS----AN--VVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAV 420 (681)
Q Consensus 351 ~~~----~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 420 (681)
... ++ ..+|-.+.......|++.-|.. .|+.....+ .-+...++.|.-.-.+.|+++.|..++.....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~r-cfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR-CFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHH-HHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 332 11 2234444444444455555555 444443322 22344555555555566666666666655544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-06 Score=88.62 Aligned_cols=244 Identities=12% Similarity=0.142 Sum_probs=139.9
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRV 271 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 271 (681)
+.+|+..|+++++.-.. .+.|..|| |..+++...+ -..|.+.+....+.... +...-++.+...+...+..
T Consensus 488 i~cfAE~Gqf~KiilY~---kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~i 558 (1666)
T KOG0985|consen 488 IQCFAETGQFKKIILYA---KKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLI 558 (1666)
T ss_pred HHHHHHhcchhHHHHHH---HHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhh
Confidence 34444444444443332 34567776 4556666555 56888888887777654 2344466677777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhc
Q 040136 272 SEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKI 351 (681)
Q Consensus 272 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 351 (681)
..+...+-..++.. .|+.....+-+---...+ |.++.+.++..+. ....-+..+.+.|.+.|-+..|++.+..+
T Consensus 559 Qq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL~~----aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl 632 (1666)
T KOG0985|consen 559 QQCTSFLLDALKLN-SPDEGHLQTRLLEMNLVH----APQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDL 632 (1666)
T ss_pred hhhHHHHHHHhcCC-ChhhhhHHHHHHHHHhcc----chHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccH
Confidence 77777766666543 455444333222122222 2333333332221 12333677888888999999998888776
Q ss_pred CC-CChHHHHHH-----HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----
Q 040136 352 PS-ANVVLLNTV-----INGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK---- 421 (681)
Q Consensus 352 ~~-~~~~~~~~l-----~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---- 421 (681)
.+ .-.++...+ +-.|...-.++++.+ ..+.|...+++.|..+...+..-|...=-.+...++|+.....
T Consensus 633 ~DIKR~vVhth~L~pEwLv~yFg~lsve~s~e-clkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~ 711 (1666)
T KOG0985|consen 633 YDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLE-CLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLY 711 (1666)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHH
Confidence 65 112222221 234555566777777 7777777777767666666555555554455555555554332
Q ss_pred -------CCCcCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 040136 422 -------GCEPNIVTYTILVDGFCKEGQLEKANIIIN 451 (681)
Q Consensus 422 -------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 451 (681)
++..|+.+....+.+-|+.|++.+..++.+
T Consensus 712 yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicr 748 (1666)
T KOG0985|consen 712 YFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICR 748 (1666)
T ss_pred HHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHh
Confidence 234455556666777777777777666554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.7e-09 Score=105.66 Aligned_cols=252 Identities=19% Similarity=0.169 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCccc-HHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHH
Q 040136 290 VQTFNDVIHGLCKVNRIHEAAKLVDRMLVR-----G-FTPDDIT-YGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTV 362 (681)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 362 (681)
..+...+...|...|+++.|+.+++..++. | ..|...+ .+.+...|...+++++|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~--------- 269 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT--------- 269 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH---------
Confidence 345555677777777777777777766543 1 1122222 22355566666777777766655322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----CC-CcCH-hhHHHHHH
Q 040136 363 INGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK-----GC-EPNI-VTYTILVD 435 (681)
Q Consensus 363 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~ll~ 435 (681)
+++...-...+.-..+++.|...|.+.|++++|...++...+. |. .|.+ ..++.+..
T Consensus 270 ----------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 270 ----------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred ----------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 2221111111112244556666677777777776666655432 11 1222 34666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040136 436 GFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG 515 (681)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (681)
.++..+++++|..++....+ ++.+.....-.--..+++.|...|.+.|++++|.+++++++...
T Consensus 334 ~~~~~~~~Eea~~l~q~al~----------------i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALK----------------IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHhcchhHHHHHHHHHHH----------------HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 88889999999998875544 33322222111234678888888888888888888888876531
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 516 -------CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK----GIK-P-SSISCNILINGLCRTRKANTALEFLRDMI 582 (681)
Q Consensus 516 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 582 (681)
..-....++.|...|.+.+.+.+|.++|.+...- |.. | ...+|..|...|...|+++.|.++.+...
T Consensus 398 ~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 398 RELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1223456677777788888888787777765432 211 1 23556667777777777777777766655
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.6e-07 Score=93.06 Aligned_cols=225 Identities=13% Similarity=0.072 Sum_probs=131.9
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhC
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEG--------IICRESLFILIMKYYGRG 162 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 162 (681)
-|+.+.|.+-.+.. .+..+|..+.+.|.+..+++.|.-.+..|.... ....+..-..........
T Consensus 741 iG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 57777777666553 235678888998988888887766555543321 010112222333334577
Q ss_pred CChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 040136 163 GVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSL 242 (681)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 242 (681)
|..++|..+|++-+ + |..|-..|-..|.+++|+++-+.--+... ..||....+.+-..++.+.|++.
T Consensus 814 gMlEeA~~lYr~ck-R---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 814 GMLEEALILYRQCK-R---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred hhHHHHHHHHHHHH-H---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHH
Confidence 89999999998887 2 23444556677889999888765333222 24566666666667777777777
Q ss_pred HHHHH----------hCC---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 243 LRDMT----------KHG---------CVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKV 303 (681)
Q Consensus 243 ~~~~~----------~~~---------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 303 (681)
|++.. ... -..|...|......+-..|+++.|+.++....+ |-++++..|-+
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 66532 111 012334444444455557888888888776653 34445555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhh
Q 040136 304 NRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNK 350 (681)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 350 (681)
|+.++|-++-++- -|......+.+.|-..|++.+|...|-+
T Consensus 952 Gk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 952 GKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred cCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6666555554432 1333444455555555555555555544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.3e-11 Score=79.92 Aligned_cols=49 Identities=43% Similarity=0.693 Sum_probs=30.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 253 PNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLC 301 (681)
Q Consensus 253 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 301 (681)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4556666666666666666666666666666666666666666666554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-08 Score=88.41 Aligned_cols=186 Identities=15% Similarity=0.099 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
+...|.-.|.+.|+...|.+-+++.++.. |.+..++..+...|.+.|+.+.|.+.|+++++.... +-...|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 45566778999999999999999999984 667888999999999999999999999999987433 5678889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHH
Q 040136 567 RTRKANTALEFLRDMIHRGLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 644 (681)
..|++++|...|++......-+ -..+|..+.-+..+.|+.+.|...|++.++. .|+ ..+...+...+.+.|++..|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999863222 2468888888889999999999999999985 454 56778899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040136 645 FLILHKGVANGFVPNDATWYILVRNLVKEINME 677 (681)
Q Consensus 645 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 677 (681)
..++++....+ .++..+....++.-.+.|+.+
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHH
Confidence 99999998865 488888777777777777654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.2e-07 Score=88.10 Aligned_cols=244 Identities=16% Similarity=0.100 Sum_probs=154.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHH
Q 040136 395 FNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQ 474 (681)
Q Consensus 395 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 474 (681)
...+.++..+..++..|.+-+....+.. .++.-++....+|...|.+...........+.|.. ....++
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre---------~rad~k 295 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE---------LRADYK 295 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH---------HHHHHH
Confidence 4567778888888999999888888764 56666777778888888888877776665554311 111111
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 040136 475 DMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS 554 (681)
Q Consensus 475 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 554 (681)
-+ ...+..+..+|.+.++++.|+..|.+.+.....|+. ..+....+++........-.+..-
T Consensus 296 lI--------ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~- 357 (539)
T KOG0548|consen 296 LI--------AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK- 357 (539)
T ss_pred HH--------HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-
Confidence 11 112233555777788888899888887665434332 122333445554444443322221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLIS 633 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 633 (681)
..-...-...+.+.|++..|++.|.+++... +-|...|..-.-+|.+.|.+..|+.-.+..++. .|+ ...|..=..
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGA 434 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHH
Confidence 1112222556677788888888888888764 446677777777888888888888877777774 444 445555556
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 634 WHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVK 672 (681)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 672 (681)
++....+|++|.+.|.+.++ ..|+..-+.--+.-|..
T Consensus 435 al~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHH
Confidence 66666778888888888877 44666555555555544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.1e-08 Score=86.48 Aligned_cols=404 Identities=14% Similarity=0.140 Sum_probs=232.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHH
Q 040136 220 VYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFND-VIH 298 (681)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~-li~ 298 (681)
..-+..++..+.+..+++.|++++....++. +.+......+..+|....++..|.+.++++-.. .|...-|.. -..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 3346666777777788888888888777765 335666777778888888888888888887764 455444443 345
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHhcCCHHHHHHHHhhcCC-CChHHHHHHHHHHHhcCCHHHH
Q 040136 299 GLCKVNRIHEAAKLVDRMLVRGFTPDDI--TYGVLMHGLCRTGRVDEARALLNKIPS-ANVVLLNTVINGYVISGRFDEA 375 (681)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 375 (681)
.+.+.+.+..|+.+...|... ++.. +...-..+....+++..+..+.++.+. .+..+.+.......+.|++++|
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHH
Confidence 666778888888888777542 1111 111111223456788888888888885 6666777777778888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-------------CHh--------------
Q 040136 376 KAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEP-------------NIV-------------- 428 (681)
Q Consensus 376 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~-------------- 428 (681)
.+-+-..+.-.|.. ....|+..+ +..+.|+++.|++...++.++|++. |+.
T Consensus 164 vqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 98444444445555 445666555 4557788999999999988876531 110
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 429 -TYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKL 507 (681)
Q Consensus 429 -~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (681)
.+|.-...+.+.|+++.|.+.+-.|..+. ....|++|...+.-. -..+++.+..+-
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa----------------------E~elDPvTLHN~Al~-n~~~~p~~g~~K 298 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRA----------------------EEELDPVTLHNQALM-NMDARPTEGFEK 298 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcc----------------------cccCCchhhhHHHHh-cccCCccccHHH
Confidence 12222223445566666655554443221 112355665544322 123445555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCC
Q 040136 508 VNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-KPSSISCNILINGLC-RTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 585 (681)
+.-+...+ |-...||..++-.||+..-++.|-.++.+-..... -.+...|+. ++++. ..-..++|.+-++.+...
T Consensus 299 LqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~- 375 (459)
T KOG4340|consen 299 LQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGM- 375 (459)
T ss_pred HHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHH-
Confidence 55555553 45677888888889998888888777654322111 113334433 33333 345677777666655432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 040136 586 LTPDIVTYNSLINGLCKMGCIQE---ALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDAT 662 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 662 (681)
+.-......+-++.-...++-.+ |++-+++..+. =..+..+-.+.|++..++..+.++|+.-++ +..+..+
T Consensus 376 l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve--fC~ehd~ 449 (459)
T KOG4340|consen 376 LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE--FCNDHDV 449 (459)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh--hhcccce
Confidence 00011111111222222222221 22222222221 112233445667788889999999988876 3444444
Q ss_pred H
Q 040136 663 W 663 (681)
Q Consensus 663 ~ 663 (681)
|
T Consensus 450 W 450 (459)
T KOG4340|consen 450 W 450 (459)
T ss_pred e
Confidence 4
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-06 Score=89.71 Aligned_cols=551 Identities=12% Similarity=-0.023 Sum_probs=298.2
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATR 170 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 170 (681)
+++...|+..|=.+.+... .-...|..+..+|..-.|...|...|..+-+.+. .+......+...|++..+.+.|..
T Consensus 471 rK~~~~al~ali~alrld~--~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDV--SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhhHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHH
Confidence 4567777777766555432 2345677777777777788888888888888774 366777888888999998888888
Q ss_pred HHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040136 171 LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHG 250 (681)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 250 (681)
+.-..-+......-...|-.+.-.+.+.++..+|+.-|+..++..+. |...|..++.+|...|++..|.++|.++....
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 74443311110111122333444566778888888888888887544 77888889999999999999999998887754
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------H
Q 040136 251 CVPNSVVYQTLIHALSKSNRVSEALMLLEEMILM------GCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRM-------L 317 (681)
Q Consensus 251 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------~ 317 (681)
|.+...---..-..+..|.+.+|+..+...... +...-..++..+...+...|-..++.+.++.. .
T Consensus 627 -P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 -PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred -cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 222222222334456788888888888776532 11111223333333333333333333333322 2
Q ss_pred HCCCCCCcccHHHHHH-------------------HHHh----cCCH---H---HHHHHHhhcCC--CChHHHHHHHHHH
Q 040136 318 VRGFTPDDITYGVLMH-------------------GLCR----TGRV---D---EARALLNKIPS--ANVVLLNTVINGY 366 (681)
Q Consensus 318 ~~~~~~~~~~~~~l~~-------------------~~~~----~g~~---~---~A~~~~~~~~~--~~~~~~~~l~~~~ 366 (681)
.+...-+...|-.+.+ ++.+ .+.. | -+.+.+-.-.+ .+...|..|+..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 2211111111211111 1111 1110 0 00000000000 2234455554444
Q ss_pred Hh----c---C-CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHH
Q 040136 367 VI----S---G-RFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFC 438 (681)
Q Consensus 367 ~~----~---g-~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 438 (681)
.+ . + +...|+. .+....+.. .-+..+|+.|. .....|.+.-|.--|-+-... .+....+|..+...+.
T Consensus 786 lr~f~~l~et~~~~~~Ai~-c~KkaV~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIR-CCKKAVSLC-ANNEGLWNALG-VLSGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHcCCcchhHHHHHH-HHHHHHHHh-hccHHHHHHHH-Hhhccchhhhhhhhhhhhhhc-cccchhheeccceeEE
Confidence 33 1 1 1123444 222222211 12444555443 334445555554444433332 1335567777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCc-----------cccHHHHHHHHHHH--H--hcCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 439 KEGQLEKANIIINEMLAKGLSLNT-----------GDRIEEALGLYQDM--L--LEGVTANTVTYNTLIHAFLRRGSLHE 503 (681)
Q Consensus 439 ~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~--~--~~~~~~~~~~~~~li~~~~~~g~~~~ 503 (681)
+..+++.|...|.......+.... .|++-++..+|..- . ..|-.++..-|-.........|+.++
T Consensus 862 ~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 888888888888877665433222 34455555555441 1 12334455445444445566666655
Q ss_pred HHHHHHHHHh---------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcC
Q 040136 504 AHKLVNDMLF---------RGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK-GIKPSSISCN----ILINGLCRTR 569 (681)
Q Consensus 504 A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g 569 (681)
-+...+.+.. .+.|.+...|...+....+.+.+..|.....+++.. ..+-+...|+ .+.+.++..|
T Consensus 942 ~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslg 1021 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLG 1021 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 4444333322 135667788888888888888888888777775432 1122334444 3445556667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChhHHHHH
Q 040136 570 KANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE-GIYPDA-VTYNTLISWHFKEGLFDDAFLI 647 (681)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 647 (681)
.++.|..-+..... ..+......-+.. .-.|+++++.+.|+++... +-.-+. +....++-+....|..+.|...
T Consensus 1022 efe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~l 1097 (1238)
T KOG1127|consen 1022 EFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFL 1097 (1238)
T ss_pred chhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHH
Confidence 77765544432211 1122221111111 3458999999999998874 112232 3445556666777888888887
Q ss_pred HHHHHHC
Q 040136 648 LHKGVAN 654 (681)
Q Consensus 648 ~~~~~~~ 654 (681)
+-+....
T Consensus 1098 Lfe~~~l 1104 (1238)
T KOG1127|consen 1098 LFEVKSL 1104 (1238)
T ss_pred HHHHHHh
Confidence 7777653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=78.31 Aligned_cols=44 Identities=43% Similarity=0.794 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.+++
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.1e-07 Score=91.43 Aligned_cols=195 Identities=15% Similarity=0.192 Sum_probs=122.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHH
Q 040136 397 ILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDM 476 (681)
Q Consensus 397 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 476 (681)
..+.+....+.+.+|+.+++.+..+. .....|..+.+.|...|+++.|.++|.+.
T Consensus 737 kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~----------------------- 791 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA----------------------- 791 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-----------------------
Confidence 34556667788888888888887763 34456778888899999999988888543
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 477 LLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 477 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
..++-.|..|.+.|+|+.|.++-.+.. |.......|.+-..-+-++|++.+|.++|-.+. .|+
T Consensus 792 ---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-- 854 (1636)
T KOG3616|consen 792 ---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-- 854 (1636)
T ss_pred ---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch--
Confidence 234455677888888888888776653 223344455555556667788888877764432 233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHF 636 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 636 (681)
.-|.+|-+.|..+..+++.++--.. .-..|...+..-+-..|+..+|...|-+..+ |.+-+..|.
T Consensus 855 ---~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk 919 (1636)
T KOG3616|consen 855 ---KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYK 919 (1636)
T ss_pred ---HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhh
Confidence 2355677777777777666553211 1123445556666677777777766655443 334445555
Q ss_pred hcCChhHHHHHH
Q 040136 637 KEGLFDDAFLIL 648 (681)
Q Consensus 637 ~~g~~~~A~~~~ 648 (681)
..+.|++|.++.
T Consensus 920 ~s~lw~dayria 931 (1636)
T KOG3616|consen 920 ASELWEDAYRIA 931 (1636)
T ss_pred hhhhHHHHHHHH
Confidence 555566555543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.3e-08 Score=84.44 Aligned_cols=207 Identities=15% Similarity=0.092 Sum_probs=172.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 429 TYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLV 508 (681)
Q Consensus 429 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 508 (681)
+...|.-.|.+.|++..|..-+++.++.++ -+..+|..+...|-+.|+.+.|.+.|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP------------------------s~~~a~~~~A~~Yq~~Ge~~~A~e~Y 92 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP------------------------SYYLAHLVRAHYYQKLGENDLADESY 92 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------------------------ccHHHHHHHHHHHHHcCChhhHHHHH
Confidence 345566679999999999999999888753 26678889999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 509 NDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG-IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLT 587 (681)
Q Consensus 509 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 587 (681)
++.+... |-+..+.|-...-+|..|++++|...|++++..- ..--..+|..+.-+..+.|+.+.|.+.|++.++.. +
T Consensus 93 rkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p 170 (250)
T COG3063 93 RKALSLA-PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-P 170 (250)
T ss_pred HHHHhcC-CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-c
Confidence 9999874 6688899999999999999999999999999862 12234688888888999999999999999999863 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 040136 588 PDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWY 664 (681)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 664 (681)
-...+.-.+.....+.|++..|..+++.....+ .++.......|..-...|+.+.|.++=..+.+ .-|.+.-+-
T Consensus 171 ~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q 244 (250)
T COG3063 171 QFPPALLELARLHYKAGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQ 244 (250)
T ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHH
Confidence 245667788888999999999999999999876 48888888888888999999988888777776 356555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.8e-08 Score=92.75 Aligned_cols=227 Identities=17% Similarity=0.083 Sum_probs=152.6
Q ss_pred CChhHHHHHHHHHHhcC-CCc--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCC
Q 040136 406 RRFGSALELVNAMAVKG-CEP--NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVT 482 (681)
Q Consensus 406 ~~~~~A~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 482 (681)
+..+.++.-+.+++... ..| ....|..+...|...|+.++|...|++.++.. +
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~------------------------P 95 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR------------------------P 95 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------------------------C
Confidence 45566666666666532 122 23457777778888898888888888887763 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILI 562 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 562 (681)
.+...|+.+...+...|++++|...|+..++.. |.+..++..+..++...|++++|...|++..+.. |+........
T Consensus 96 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~ 172 (296)
T PRK11189 96 DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWL 172 (296)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 367888888899999999999999999988763 5567788888888888999999999999988864 3322122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHH
Q 040136 563 NGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE---G--IYP-DAVTYNTLISWHF 636 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~ 636 (681)
..+...++.++|.+.+++.... ..|+...+ .......|+..++ +.++.+.+. . +.| ....|..+...+.
T Consensus 173 ~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~ 247 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQRYEK-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYL 247 (296)
T ss_pred HHHHccCCHHHHHHHHHHHHhh-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 2334567889999999776543 23332222 2233345666554 345555432 0 111 2357888899999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 637 KEGLFDDAFLILHKGVANGFVPNDATWYI 665 (681)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 665 (681)
+.|++++|...|+++++.. +||..-+..
T Consensus 248 ~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 248 SLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred HCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 9999999999999999743 346655544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-06 Score=89.10 Aligned_cols=484 Identities=11% Similarity=-0.001 Sum_probs=269.9
Q ss_pred CchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHH
Q 040136 129 EFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLF 208 (681)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 208 (681)
+...|...|-+..+.++. -..+|..|...|....+...|.+.|+... +.. ..+...+......|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAF-eLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAF-ELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 355566666666665532 34578888888888888888999998887 332 445667788888999999999998884
Q ss_pred HHHHHCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 040136 209 YDMLSKGIS-PTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCT 287 (681)
Q Consensus 209 ~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 287 (681)
-..-+.... .-..-|..+.-.|...++...|..-|+...+.. |.|...|..+..+|...|++..|.++|.+.... .
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 333332100 001112223344667788888888888888876 667888999999999999999999999888764 3
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC-------
Q 040136 288 SD-VQTFNDVIHGLCKVNRIHEAAKLVDRMLVRG------FTPDDITYGVLMHGLCRTGRVDEARALLNKIPS------- 353 (681)
Q Consensus 288 ~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 353 (681)
|+ ...---.....+..|.+.+|+..+....... ..--..++..+...+.-.|-..+|...+++..+
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 33 2222223344577889999988888776431 111112222222333333444444444443222
Q ss_pred ----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---h---HHHHHHHHHHhcCC
Q 040136 354 ----ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRF---G---SALELVNAMAVKGC 423 (681)
Q Consensus 354 ----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~---~---~A~~~~~~~~~~~~ 423 (681)
.+...|-.+.+ |.. ++-... .. .|+......+..-....+.. + -+.+.+-.-. .+
T Consensus 707 h~~~~~~~~Wi~asd----------ac~-~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl 771 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASD----------ACY-IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SL 771 (1238)
T ss_pred HhhhhhHHHHHHHhH----------HHH-HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HH
Confidence 11222222222 112 222121 11 22322222222212222222 1 0111110001 11
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 424 EPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHE 503 (681)
Q Consensus 424 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 503 (681)
..+...|..++..|.+ .....+-. ..+...|+..+++..+.. ..+..+|+.|.-. ...|++.-
T Consensus 772 ~~~~~~WyNLGinylr------------~f~~l~et---~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~ 834 (1238)
T KOG1127|consen 772 AIHMYPWYNLGINYLR------------YFLLLGET---MKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVAC 834 (1238)
T ss_pred hhccchHHHHhHHHHH------------HHHHcCCc---chhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhh
Confidence 1223344444333322 11111000 011123333333333321 2266777776655 66678888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--H
Q 040136 504 AHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRD--M 581 (681)
Q Consensus 504 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~ 581 (681)
|...|-+-... .|....+|..+...+.+..+++-|...|.......+. +...|-.........|+.-++..+|.. .
T Consensus 835 aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~e 912 (1238)
T KOG1127|consen 835 AQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDE 912 (1238)
T ss_pred hhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHH
Confidence 88777776655 3557778888888888899999999999988875322 455565555555677888888888776 2
Q ss_pred HH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040136 582 IH--RGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE---------GIYPDAVTYNTLISWHFKEGLFDDAFLILHK 650 (681)
Q Consensus 582 ~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (681)
.. .|-.|+..-|-.........|+.++-+...+++-.. +.+-+...|...+...-+.+.+.+|.....+
T Consensus 913 l~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 913 LCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred hhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 22 244555555555445555666666654444433221 3344466777777777777777777776666
Q ss_pred HH
Q 040136 651 GV 652 (681)
Q Consensus 651 ~~ 652 (681)
+.
T Consensus 993 li 994 (1238)
T KOG1127|consen 993 LI 994 (1238)
T ss_pred HH
Confidence 54
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.5e-05 Score=85.71 Aligned_cols=339 Identities=12% Similarity=0.039 Sum_probs=208.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC----C----C----hHHHHHHHHHHH
Q 040136 300 LCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS----A----N----VVLLNTVINGYV 367 (681)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~----~~~~~~l~~~~~ 367 (681)
....|+++.+..++..+.......+..........+...|+++++...+..... . + ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445677777777666542211112223334445556677888888877765432 1 1 112223344567
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC---Cc--CHhhHHHHHHHHH
Q 040136 368 ISGRFDEAKAIFYDSMLSVGCIPDV----FTFNILIHGLCKQRRFGSALELVNAMAVKGC---EP--NIVTYTILVDGFC 438 (681)
Q Consensus 368 ~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~ll~~~~ 438 (681)
..|++++|.. ..+.........+. ...+.+...+...|+++.|...+++.....- .+ ....+..+...+.
T Consensus 464 ~~g~~~~A~~-~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAER-LAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHH-HHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999998 66655442111121 2345556667789999999999988765311 11 1234556667788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C
Q 040136 439 KEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG--C 516 (681)
Q Consensus 439 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~ 516 (681)
..|+++.|...+++.... ...............+..+...+...|++++|...+.+..... .
T Consensus 543 ~~G~~~~A~~~~~~al~~----------------~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQL----------------IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred HCCCHHHHHHHHHHHHHH----------------HHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 899999999988776542 1111000001122344555666778899999999988875531 1
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 517 PL--DEITYNGLIKALCNAGAVDKGLGLFEEMMRKG--IKPSSI--S--CNILINGLCRTRKANTALEFLRDMIHRGLTP 588 (681)
Q Consensus 517 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~--~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 588 (681)
.+ ....+..+...+...|++++|...++++.... ...... . ....+..+...|+.+.|.+.+..........
T Consensus 607 ~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~ 686 (903)
T PRK04841 607 QPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFAN 686 (903)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCcc
Confidence 11 23344456667788999999999998886531 111111 0 0112244556889999999987765421111
Q ss_pred CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 589 DI---VTYNSLINGLCKMGCIQEALNLFDKLQAE----GIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVANG 655 (681)
Q Consensus 589 ~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 655 (681)
.. ..+..+..++...|+.++|...++++... |...+ ..+...+..++.+.|+.++|...+.++++..
T Consensus 687 ~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 687 NHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 11 11345677788999999999999988764 32222 3456677788999999999999999998853
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.9e-06 Score=84.55 Aligned_cols=411 Identities=14% Similarity=0.110 Sum_probs=198.7
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCC--------CCCHHhHHHHHHHH
Q 040136 124 LGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGC--------QPTFRSYNVVLDVL 195 (681)
Q Consensus 124 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~~ll~~~ 195 (681)
|..-|+.+.|.+-+.-++ +..+|..+.+.+.+..+.+-|.-.+-.|....|. .++ ..-.-+...-
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 445566666655555443 3346667777666666666665555444422221 111 1111111222
Q ss_pred HhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 040136 196 VAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEAL 275 (681)
Q Consensus 196 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 275 (681)
.+.|..++|..+|.+-.+ |..|=+.|-..|.+++|.++-+.--+... ..||.....-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 345556666666655443 33344445555666666665544322211 234444444445555566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 040136 276 MLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSAN 355 (681)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 355 (681)
+.|++.-. +--..+..|. .++....++.+++. |...|.--...+-..|+.+.|+.+|...++
T Consensus 879 eyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 879 EYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 55554210 1111111110 12222222222222 334455555556667888888887776543
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHH
Q 040136 356 VVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVD 435 (681)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 435 (681)
|-.+++..+-.|+.++|-. +-+ +. -|......+.+.|...|++.+|...|.+... +...|.
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~-iA~---es---gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIR 1001 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAAR-IAE---ES---GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIR 1001 (1416)
T ss_pred ---hhhheeeEeeccCchHHHH-HHH---hc---ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHH
Confidence 5566666777788887777 322 22 2556667778888888888888887766542 223333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----
Q 040136 436 GFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVND----- 510 (681)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----- 510 (681)
.| +.+++++-+.-+.-|.. ..+.-.|...|++..- -....+..|.+.|.+.+|+++-=+
T Consensus 1002 lc-KEnd~~d~L~nlal~s~-------~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 1002 LC-KENDMKDRLANLALMSG-------GSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred HH-HhcCHHHHHHHHHhhcC-------chhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence 22 22222222111111110 1122222233322210 112233446666666666554211
Q ss_pred ---HHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-C
Q 040136 511 ---MLFR--GCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIH-R 584 (681)
Q Consensus 511 ---~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 584 (681)
++.. ....|+...+.-.+.++...++++|..++-...+. ..-+. +|...+..-..++-+.|.- +
T Consensus 1066 aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee~aE~mTp~K 1135 (1416)
T KOG3617|consen 1066 ALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEEFAELMTPTK 1135 (1416)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHHHHHhcCcCc
Confidence 1111 22346666666677777777777777776655442 11121 2333333333333333321 1
Q ss_pred CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 585 GLTPDI----VTYNSLINGLCKMGCIQEALNLFDKL 616 (681)
Q Consensus 585 ~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (681)
+-.|+. .....+...|.++|.+..|-+-|-++
T Consensus 1136 d~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1136 DDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred CCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 122332 34566677788888887776655544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-07 Score=89.07 Aligned_cols=150 Identities=10% Similarity=-0.111 Sum_probs=81.1
Q ss_pred ChHHHHHHHHHcHhhcCCCCC--HHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 040136 164 VPGQATRLLLDMKSVYGCQPT--FRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACS 241 (681)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 241 (681)
..+.++.-+.++.......|+ ...|..+...+...|+.++|...|++.++... .+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 444455555444422111222 23455555556666666666666666666532 245566666666666666666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 242 LLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML 317 (681)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (681)
.|+...+.. +.+..+|..+..++...|++++|.+.+++..+.. |+..............++.++|...+.+..
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666666654 3345566666666666667777776666666542 222111111122234556666666665544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.3e-05 Score=77.20 Aligned_cols=522 Identities=14% Similarity=0.106 Sum_probs=283.8
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATR 170 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 170 (681)
.++...|+.-...+++++|-.+...++..+. +.|.|+.++|..+++.....+.. +..+...+...|.+.|+.++|..
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 4678889998988888876544444444444 67889999999888887776654 77888889999999999999999
Q ss_pred HHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----------ChhHHH
Q 040136 171 LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVN----------EVDSAC 240 (681)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----------~~~~A~ 240 (681)
+|++..+. -|+......+..+|++.+++.+-.+.--+|.+. .+-+.+.+=++++.....- -..-|.
T Consensus 99 ~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 99 LYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 99998833 455555556666777777766554444444443 2335566666666554331 123466
Q ss_pred HHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 241 SLLRDMTKHG-CVPNSVVYQTLIHALSKSNRVSEALMLL-EEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLV 318 (681)
Q Consensus 241 ~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (681)
+.++.+.+.+ -.-+..-.......+-..|.+++|++++ ....+.-...+...-+.-+..+...+++.+..++..++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 6777776654 1122222333345566788899999888 3444432233444444556667778888888888888887
Q ss_pred CCCCCCcccHHHHHHHHH----------------hcCCHHHHHHHHhhcCC---CChH-HHHHHHHHHHhcCCHHHHHHH
Q 040136 319 RGFTPDDITYGVLMHGLC----------------RTGRVDEARALLNKIPS---ANVV-LLNTVINGYVISGRFDEAKAI 378 (681)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~~~~---~~~~-~~~~l~~~~~~~g~~~~a~~~ 378 (681)
.|.. | |...++.+. ..+..+...+...+... +++. ++-.+..-+..-|+.+++...
T Consensus 255 k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 255 KGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred hCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence 7543 2 333222211 11223333333322222 2222 122222223345777776654
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHh-------hHHHHHHHHHhcCC-----HHHH
Q 040136 379 FYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIV-------TYTILVDGFCKEGQ-----LEKA 446 (681)
Q Consensus 379 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~g~-----~~~A 446 (681)
+++.. |..| .|..=+..|...=..+.-..++...... .++.. -+...+..-.-.|. -+.-
T Consensus 331 y~~kf---g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i 402 (932)
T KOG2053|consen 331 YFKKF---GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSI 402 (932)
T ss_pred HHHHh---CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 44433 3222 1111222222222222333333333221 11111 01111111111221 1111
Q ss_pred HHHHHHHH---HCCCCCCccccHHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHH
Q 040136 447 NIIINEML---AKGLSLNTGDRIEEALGLYQDMLLEGVTANT---------VTYNTLIHAFLRRGSLH---EAHKLVNDM 511 (681)
Q Consensus 447 ~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~---~A~~~~~~~ 511 (681)
..++.+.. +.|... .++.-|+. -+-+.|++.|.+.++.. +|+-+++..
T Consensus 403 ~a~~~kl~~~ye~gls~-----------------~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~g 465 (932)
T KOG2053|consen 403 LAYVRKLKLTYEKGLSL-----------------SKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENG 465 (932)
T ss_pred HHHHHHHHHHHhccccc-----------------cccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 22221111 111000 00111121 23467788888888755 566666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-
Q 040136 512 LFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI- 590 (681)
Q Consensus 512 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 590 (681)
.... +.|..+-..++..|+-.|-+..|..+|+.+--+.+..|...|- +...+...|++..+...++....- ...+.
T Consensus 466 lt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~k 542 (932)
T KOG2053|consen 466 LTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLK 542 (932)
T ss_pred hhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-Hhhhhh
Confidence 6553 6677777889999999999999999999987776666655443 344556677888777777765542 11111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLF---DKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
.+-..+..+| +.|.+.+..++. +++......--..+-+..++.++..++.++-...++.|.
T Consensus 543 E~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 543 ETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 1222223333 456665544432 233222111123344566677777888877777777665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-08 Score=93.10 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 040136 500 SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKA-NTALEFL 578 (681)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 578 (681)
.+.+|..+|+++.+. .++++.+.+.+..++...|++++|..++.++.+.+.. +..+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 345555555554433 3444455555555555555555555555554443222 334444444444444444 3344444
Q ss_pred HHHHH
Q 040136 579 RDMIH 583 (681)
Q Consensus 579 ~~~~~ 583 (681)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.5e-06 Score=83.61 Aligned_cols=203 Identities=13% Similarity=0.097 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 428 VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKL 507 (681)
Q Consensus 428 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (681)
.....+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~------------------------p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELN------------------------PDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------------CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 344455567778888888888888877753 22556677778888888888888888
Q ss_pred HHHHHhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--H
Q 040136 508 VNDMLFRGC-PLDE--ITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-KPSSISC-N--ILINGLCRTRKANTALEF--L 578 (681)
Q Consensus 508 ~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~ 578 (681)
+++...... .++. ..|..+...+...|++++|..+++++..... .+..... + .++.-+...|....+.+. +
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~ 250 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDL 250 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHH
Confidence 888776531 1222 3455677778888888888888888764322 1112111 1 233333444443333332 1
Q ss_pred HHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHHHhcCChhHHHHHH
Q 040136 579 RDMIHRGLT--PDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIY---P-----DAVTYNTLISWHFKEGLFDDAFLIL 648 (681)
Q Consensus 579 ~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p-----~~~~~~~l~~~~~~~g~~~~A~~~~ 648 (681)
......... ...........++...|+.+.|..+++.+...... - .........-++...|++++|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L 330 (355)
T cd05804 251 ADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELL 330 (355)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHH
Confidence 111111001 11122224566777888999999999888764211 0 1222233334567889999999999
Q ss_pred HHHHHC
Q 040136 649 HKGVAN 654 (681)
Q Consensus 649 ~~~~~~ 654 (681)
.+.+..
T Consensus 331 ~~al~~ 336 (355)
T cd05804 331 GPVRDD 336 (355)
T ss_pred HHHHHH
Confidence 888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.5e-06 Score=82.62 Aligned_cols=310 Identities=11% Similarity=-0.049 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 114 FDVYYVLIDKLGANKEFKVIDSVLLQMKEEGI-ICRE-SLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
...|..+...+...|+.+.+...+........ ..+. .........+...|++++|...+++.... .+.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence 34455555555566666666555555444332 1121 12222333445667777777777666522 1333333332
Q ss_pred HHHHHhc----CCcCcHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 040136 192 LDVLVAG----NCHKVAPNLFYDMLSKGISPT-VYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALS 266 (681)
Q Consensus 192 l~~~~~~----~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 266 (681)
...+... +....+.+.+.. .....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 2222222 333333333332 1111122 2233344455566666666666666666654 444555666666666
Q ss_pred hcCChhHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHH
Q 040136 267 KSNRVSEALMLLEEMILMGC-TSDV--QTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDE 343 (681)
Q Consensus 267 ~~~~~~~A~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 343 (681)
..|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .......+..
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~--~~~~~~~~~~---------- 227 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA--ESDPALDLLD---------- 227 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc--CCChHHHHhh----------
Confidence 66666666666666654321 1221 2233455566666666666666666543211 0111100000
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040136 344 ARALLNKIPSANVVLLNTVINGYVISGRFDEAKAI--FYDSMLSVGC-IPDVFTFNILIHGLCKQRRFGSALELVNAMAV 420 (681)
Q Consensus 344 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~--~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 420 (681)
...++.-+...|....+..+ +......... ............++...|+.+.|..+++.+..
T Consensus 228 ---------------~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 228 ---------------AASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred ---------------HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 00111111222222222220 1111111000 11112223456677888999999999988766
Q ss_pred cCCC---c-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 421 KGCE---P-----NIVTYTILVDGFCKEGQLEKANIIINEMLAK 456 (681)
Q Consensus 421 ~~~~---~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 456 (681)
.... - .+...-...-++...|++++|...+...+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3222 0 1122222233456789999999988877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-05 Score=81.18 Aligned_cols=107 Identities=17% Similarity=0.290 Sum_probs=59.5
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 040136 332 MHGLCRTGRVDEARALLNKIPSANVV--LLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFG 409 (681)
Q Consensus 332 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 409 (681)
+.+.....++.+|+.+++.+...++. -|..+.+.|...|+++-|.+ +|.. ...++-.|.+|.+.|+++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~-lf~e---------~~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEE-LFTE---------ADLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHH-HHHh---------cchhHHHHHHHhccccHH
Confidence 34444556666666666666553332 35555666666677666666 3321 123445566667777777
Q ss_pred HHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 040136 410 SALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIII 450 (681)
Q Consensus 410 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 450 (681)
+|.++-++.. |....+..|-.-..-+-+.|++.+|.+++
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 7666655443 22334445555555555666666665554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.4e-05 Score=72.68 Aligned_cols=190 Identities=12% Similarity=0.164 Sum_probs=139.0
Q ss_pred cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 040136 463 GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRG---SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKG 539 (681)
Q Consensus 463 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 539 (681)
....+++..++++....-..-+..+|..+...--..- ..+....+++++...-...-..+|..+++.-.+..-+..|
T Consensus 306 ~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaa 385 (656)
T KOG1914|consen 306 KSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAA 385 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHH
Confidence 3445556666666554333334455554443221111 2566667777766553333345788888888888889999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 540 LGLFEEMMRKGIKP-SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 540 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+.+|.++.+.+..+ ++..+++++..|| +++.+.|.++|+--+.. ...+..-....+.-+...|+-..|..+|++.+.
T Consensus 386 R~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 386 RKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 99999999987666 7788888888776 67889999999987765 333445556788888999999999999999999
Q ss_pred CCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 619 EGIYPD--AVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 619 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
.++.|+ ..+|..+++.-...|+++.+.++-+++...
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 876666 579999999999999999999988887763
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-05 Score=75.92 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=123.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHH------
Q 040136 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTI------ 432 (681)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------ 432 (681)
...+.....+..+++.|++ -+....... -+..-++....+|...|.+..+........+.|.. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q-~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~ 302 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQ-HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHhhhHHHHHH-HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHH
Confidence 4456667777778888887 666555543 35555666777888888888888777776666522 1222332
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 433 -LVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLE-GVTANT-VTYNTLIHAFLRRGSLHEAHKLVN 509 (681)
Q Consensus 433 -ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 509 (681)
+..+|.+.++++.++..|.+.+.....++......++.+........ -+.|.. .-...-...+.+.|++..|.+.|.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 33356667788888888888777655544433333333333222211 111111 111222444556666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 510 DMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 510 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
+++... |.|...|.--.-+|.+.|.+..|+.-.+..++.. ++....|..=+.++....+++.|++.|.+.++.
T Consensus 383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666653 5566666666666666666666666555555542 112333433344444455566666666666553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9e-06 Score=74.84 Aligned_cols=313 Identities=13% Similarity=0.124 Sum_probs=209.8
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHH---HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 040136 324 DDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVI---NGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFN-ILI 399 (681)
Q Consensus 324 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~ll 399 (681)
++.-...+...+...|++.+|+.-|....+.|+..|.++. ..|...|+..-|+. =+....+ .+||...-. .-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~-Dl~rVle--lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQ-DLSRVLE--LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchh-hHHHHHh--cCccHHHHHHHhc
Confidence 3344456788888899999999999999888877777664 46888888888887 4444544 356653321 123
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhc
Q 040136 400 HGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLE 479 (681)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 479 (681)
..+.+.|.++.|..-|+.++... |+.. ....++.+.-..++-..+..+++.. ...|+...+++....+++-
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~l~~ql~s~----~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWVLVQQLKSA----SGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHHHHHHHHHH----hcCCchhhHHHHHHHHHhc
Confidence 45778999999999999988773 3211 1122222222222222222222211 1124444555555555544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 480 GVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCN 559 (681)
Q Consensus 480 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 559 (681)
. +.+...|..-..+|...|++..|+.-++...+.. ..+..++-.+-..+...|+.+.++...++.++. .||...+-
T Consensus 185 ~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf 260 (504)
T KOG0624|consen 185 Q-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCF 260 (504)
T ss_pred C-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHH
Confidence 3 3488888888999999999999999888887764 456666777778888999999999988888875 45543221
Q ss_pred ----HH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 560 ----IL---------INGLCRTRKANTALEFLRDMIHRGLTPDIVT---YNSLINGLCKMGCIQEALNLFDKLQAEGIYP 623 (681)
Q Consensus 560 ----~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 623 (681)
.+ +......+++.++++-.+...+.......+. +..+-.++...|++.+|++.-.+.++ +.|
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~ 338 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCc
Confidence 11 2223456777777777777776432212233 33455667788899999999999988 466
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 624 D-AVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 624 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
| ..++..-..+|.-...+++|+.-|+++.+.
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5 778888889999999999999999999873
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5e-07 Score=88.98 Aligned_cols=247 Identities=14% Similarity=0.092 Sum_probs=173.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcC
Q 040136 401 GLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEG 480 (681)
Q Consensus 401 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 480 (681)
-+.+.|++.+|.-.|+...... +-+...|..|.......++-..|+..+.+.++.++
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP---------------------- 350 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP---------------------- 350 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC----------------------
Confidence 3567788888888888877663 33567777777777777777777777777766542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-------HHHHHcCCHHHHHHHHHHHH-HCCCC
Q 040136 481 VTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLI-------KALCNAGAVDKGLGLFEEMM-RKGIK 552 (681)
Q Consensus 481 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~~-~~~~~ 552 (681)
.|.....+|.-.|...|.-..|++.++..+....+ -...-..=. ..+.....+....++|-++. ..+..
T Consensus 351 --~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~ 427 (579)
T KOG1125|consen 351 --TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK 427 (579)
T ss_pred --ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 26777788888888888888888888888665311 100000000 01111112334444554444 44545
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 040136 553 PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNT 630 (681)
Q Consensus 553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 630 (681)
+|+.....|.-.|.-.|++++|.+.|+.++.. .| |..+||.|...++...+.++|+..|+++++ +.|+ +.+...
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyN 503 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYN 503 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehh
Confidence 77888888888899999999999999999984 45 678899999999999999999999999998 6888 446667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCccc
Q 040136 631 LISWHFKEGLFDDAFLILHKGVAN---------GFVPNDATWYILVRNLVKEINME 677 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~~---------g~~~~~~~~~~ll~~~~~~g~~~ 677 (681)
|.-.|...|.+.||.+.|-+++.- +..++...|..|-.++.-.++.|
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 888899999999999988877652 11223457777776666665544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.2e-05 Score=68.42 Aligned_cols=312 Identities=12% Similarity=0.054 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 040136 221 YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTF-NDVIHG 299 (681)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~ 299 (681)
.-..-+.+.+...|++..|+.-|....+.+ +.+-.++-.-...|...|+...|+.=|.+.++. +||-..- ..-...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 334445555666666666666666666543 112222223334566666666666666666654 4553221 112334
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCc--c------------cHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHH
Q 040136 300 LCKVNRIHEAAKLVDRMLVRGFTPDD--I------------TYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTV 362 (681)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 362 (681)
+.++|.++.|..-|+.++++....+. . .....+..+...|+...|+.....+.+ -+...+..-
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 55666677776666666655221110 0 112233445566777777777666655 445556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCC
Q 040136 363 INGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQ 442 (681)
Q Consensus 363 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 442 (681)
..+|...|.+..|+. =.+...+... -+..++..+-..+...|+.+.++...++.++. .||....... |-+...
T Consensus 196 akc~i~~~e~k~AI~-Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~---YKklkK 268 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIH-DLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF---YKKLKK 268 (504)
T ss_pred HHHHHhcCcHHHHHH-HHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH---HHHHHH
Confidence 777777777777776 3333333322 24445555666677777777777777777655 4554322111 111122
Q ss_pred HHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 040136 443 LEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTV---TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD 519 (681)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 519 (681)
+.+.+.-.++.++. +.+.++++..+...+..+..... .+..+-.++...|++.+|++.-.+++... +.|
T Consensus 269 v~K~les~e~~ie~-------~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~d 340 (504)
T KOG0624|consen 269 VVKSLESAEQAIEE-------KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDD 340 (504)
T ss_pred HHHHHHHHHHHHhh-------hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chH
Confidence 22222222222221 34555555555555443332222 23345556667778888888888887762 445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
..++.--..+|.-...++.|+.-|+.+.+.+
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777777788887888888888888887753
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-05 Score=87.13 Aligned_cols=370 Identities=12% Similarity=0.010 Sum_probs=214.7
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSKGISPT-VYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNR 270 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 270 (681)
...+...|++.+|....... +..+. ..............|+++.+...++.+.......+..........+...|+
T Consensus 348 a~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 34455666666665544332 21110 011112223344567777777777665322111223333344455567788
Q ss_pred hhHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhc
Q 040136 271 VSEALMLLEEMILMGC------TSDV--QTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDD----ITYGVLMHGLCRT 338 (681)
Q Consensus 271 ~~~A~~~~~~m~~~~~------~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 338 (681)
++++...+......-- .+.. .....+...+...|++++|...+++....-...+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 8888888877654210 1111 12222334456788888888888887653111111 2345566677788
Q ss_pred CCHHHHHHHHhhcCC-------CC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHH
Q 040136 339 GRVDEARALLNKIPS-------AN--VVLLNTVINGYVISGRFDEAKAIFYDSMLS----VGCI--P-DVFTFNILIHGL 402 (681)
Q Consensus 339 g~~~~A~~~~~~~~~-------~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~--p-~~~~~~~ll~~~ 402 (681)
|++++|...+++... .. ...+..+...+...|++++|.. .++.... .+.. + ....+..+...+
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYE-TQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 888888888776653 11 2345556677888899999888 5444332 2211 1 223344555667
Q ss_pred HhcCChhHHHHHHHHHHhcC--CCc--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHh
Q 040136 403 CKQRRFGSALELVNAMAVKG--CEP--NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLL 478 (681)
Q Consensus 403 ~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 478 (681)
...|++++|...+++..... ..+ ....+..+...+...|+++.|...+.+.......
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~------------------- 644 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN------------------- 644 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-------------------
Confidence 77899999999988875531 112 2334445666778899999999888776542100
Q ss_pred cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----
Q 040136 479 EGVTANT--VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDE---ITYNGLIKALCNAGAVDKGLGLFEEMMRK---- 549 (681)
Q Consensus 479 ~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 549 (681)
.+..... ......+..+...|+.+.|.+.+............ ..+..+..++...|++++|...++++...
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~ 724 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL 724 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 0000000 00011224455678999999988775543211111 11345667788899999999999988763
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 550 GIKPS-SISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 550 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
|...+ ..+...+..++...|+.++|...+.+..+.
T Consensus 725 g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 725 RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32222 245667778888999999999999998875
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-05 Score=71.31 Aligned_cols=302 Identities=13% Similarity=0.039 Sum_probs=176.4
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhCCChHHHH
Q 040136 91 PLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFI-LIMKYYGRGGVPGQAT 169 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~ 169 (681)
..++..|.+++..-....+ .+...++.+..++.+..++..|...++++-...+ ...-|. --...+-+.+.+.+|+
T Consensus 23 d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P--~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP--ELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHHHHHHhcccHHHH
Confidence 3567777777765443322 3666677777888888888888888888877653 333332 2244455788888888
Q ss_pred HHHHHcHhhcCCCCCHHhHHHHHH--HHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 170 RLLLDMKSVYGCQPTFRSYNVVLD--VLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMT 247 (681)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 247 (681)
++...|.. .++...-..-+. .....+++-.+..++++....| +..+.+...-...+.|+++.|.+-|....
T Consensus 99 rV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 99 RVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHH
Confidence 88887772 233332222222 2345677888888887765433 34444555555567888888888888877
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 248 KHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTF----NDVIHGLCKVNRIHEAAKLVDRMLVRGFTP 323 (681)
Q Consensus 248 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (681)
+.+.-....+||..+ +..+.|+++.|++...++.++|++..+..- ...+++- ..|+ -..+....
T Consensus 172 qvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN---t~~lh~Sa------- 239 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN---TLVLHQSA------- 239 (459)
T ss_pred hhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---hHHHHHHH-------
Confidence 754333355666444 445668888888888888887754322210 0000000 0000 00000000
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 040136 324 DDITYGVLMHGLCRTGRVDEARALLNKIPS-----ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNIL 398 (681)
Q Consensus 324 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 398 (681)
-...+|.-..++.+.|+.+.|.+.+-.|+. .|+++...+.-.-+. +++.+..+ -+..+...+. -...||..+
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~-KLqFLL~~nP-fP~ETFANl 316 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFE-KLQFLLQQNP-FPPETFANL 316 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHH-HHHHHHhcCC-CChHHHHHH
Confidence 011233344556788889999988888876 566666555433222 22222222 1223333332 345678888
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 040136 399 IHGLCKQRRFGSALELVNAM 418 (681)
Q Consensus 399 l~~~~~~~~~~~A~~~~~~~ 418 (681)
+-.||+..-++.|.+++.+-
T Consensus 317 LllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhC
Confidence 88889988888888887553
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-05 Score=71.20 Aligned_cols=248 Identities=12% Similarity=0.099 Sum_probs=145.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 300 LCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIF 379 (681)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 379 (681)
+.-.|.+..++.......... -+...-..+.++|...|++.....-...-..+.......+......-++.++.+.-+
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 334455554444333332221 223333334455555555443333222222233333333333333344444444446
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 380 YDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLS 459 (681)
Q Consensus 380 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 459 (681)
.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|...+++|.+-+
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-- 167 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID-- 167 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--
Confidence 6666665555454444444556788888888888776522 33333333455666777777777777776642
Q ss_pred CCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 040136 460 LNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLR----RGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGA 535 (681)
Q Consensus 460 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 535 (681)
+..+.+-|..++.+ .+.+.+|.-+|++|.+. .+|+..+.+....++...|+
T Consensus 168 ------------------------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 168 ------------------------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred ------------------------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 55566666666543 34688888889888876 58888888888888888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 040136 536 VDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANT-ALEFLRDMIH 583 (681)
Q Consensus 536 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 583 (681)
+++|..+++.++.+... ++.+...++-.-...|...+ ..+.+.++..
T Consensus 223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999888887544 56666666666666666544 4455555554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.7e-07 Score=86.96 Aligned_cols=249 Identities=15% Similarity=0.118 Sum_probs=123.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040136 230 LCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEA 309 (681)
Q Consensus 230 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (681)
+.-.|++..++.-.+ .....-..+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666665444 222221222334445666777777665433 3332222 45555554444433333444445
Q ss_pred HHHHHHHHHCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040136 310 AKLVDRMLVRGFTP-DDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGC 388 (681)
Q Consensus 310 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (681)
+.-+++....+... +.........++...|++++|++++.+. .+.......+..|.+.++++.|.+ .++.|.+..
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k-~l~~~~~~~- 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEK-ELKNMQQID- 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHH-HHHHHHCCS-
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHH-HHHHHHhcC-
Confidence 44444433332221 2222223334455667777777766654 445555556666667777777776 556665532
Q ss_pred CCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc
Q 040136 389 IPDVFTFNILIHGLCK----QRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGD 464 (681)
Q Consensus 389 ~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 464 (681)
.| .+...+..++.. .+.+.+|..+|+++.+. +.+++.+.+.+..++...|++++|..++.+....+
T Consensus 162 -eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~------- 231 (290)
T PF04733_consen 162 -ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD------- 231 (290)
T ss_dssp -CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--------
T ss_pred -Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-------
Confidence 22 333334443332 23566777777776543 34566666666666666777777766666654432
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 040136 465 RIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSL-HEAHKLVNDMLFR 514 (681)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~ 514 (681)
+-++.+...++.+....|+. +.+.+.+.++...
T Consensus 232 -----------------~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 -----------------PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred -----------------cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 12445555556555566655 4455555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.8e-06 Score=82.28 Aligned_cols=256 Identities=15% Similarity=0.124 Sum_probs=119.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHH
Q 040136 366 YVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEK 445 (681)
Q Consensus 366 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 445 (681)
+.+.|++.+|.- +|+...+.. +-+...|..|.......++-..|+..+++..+.. +.+......|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~L-afEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAAL-AFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHH-HHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 344455555544 444444432 2245555555555555666566666666665542 2345555666666666666666
Q ss_pred HHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHH
Q 040136 446 ANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDM-LFRGCPLDEITYN 524 (681)
Q Consensus 446 A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~ 524 (681)
|...|+.-+...+.... ....+. +...-.. ..+..........++|-++ ...+..+|+.+..
T Consensus 372 Al~~L~~Wi~~~p~y~~-------------l~~a~~--~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~ 434 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVH-------------LVSAGE--NEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQS 434 (579)
T ss_pred HHHHHHHHHHhCccchh-------------ccccCc--cccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHh
Confidence 66666655443211100 000000 0000000 0000011112222233222 2222234555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc
Q 040136 525 GLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI-VTYNSLINGLCKM 603 (681)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 603 (681)
.|.-.|.-.|++++|++.|+.++...+. |..+||-|...++...+.++|+..|++.++ +.|+. .+.-.|.-+|...
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNL 511 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhh
Confidence 5555566666666666666666654221 445566666666666666666666666665 34442 2233344455566
Q ss_pred CCHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCChhHH
Q 040136 604 GCIQEALNLFDKLQAE---------GIYPDAVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 604 g~~~~A~~~~~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A 644 (681)
|.+++|.+.|-.++.. +-.++..+|.+|=.++.-.++.|-+
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 6666666655544432 0111234555555555555554433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-05 Score=81.38 Aligned_cols=216 Identities=18% Similarity=0.167 Sum_probs=148.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHH
Q 040136 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFC 438 (681)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 438 (681)
-..+...+...|-..+|+. +++.+ ..|..+|.+|+..|+..+|..+..+..++ +|+...|..+.+...
T Consensus 401 q~~laell~slGitksAl~-I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALV-IFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHcchHHHHHH-HHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 4456778888899999988 66543 35677888999999999999998888874 788888888888877
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 040136 439 KEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPL 518 (681)
Q Consensus 439 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 518 (681)
...-+++|.++.+....+ .-..+.....+.+++.++.+.++.-.+.+ +.
T Consensus 469 d~s~yEkawElsn~~sar------------------------------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-pl 517 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR------------------------------AQRSLALLILSNKDFSEADKHLERSLEIN-PL 517 (777)
T ss_pred ChHHHHHHHHHhhhhhHH------------------------------HHHhhccccccchhHHHHHHHHHHHhhcC-cc
Confidence 777788888887765432 11111112233567777777777666653 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
...+|-.+..+..+.++++.|.+.|.......+ -+...||.+-.+|.+.++..+|...+++..+.+ .-+...|...+-
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENyml 595 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYML 595 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhh
Confidence 666677777777777777777777777766421 144667777777777777777777777777665 334455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 040136 599 GLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~ 619 (681)
...+.|.+++|++.+.++...
T Consensus 596 vsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 596 VSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhcccHHHHHHHHHHHHHh
Confidence 666777777777777766654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00086 Score=70.30 Aligned_cols=516 Identities=11% Similarity=-0.001 Sum_probs=265.4
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcH
Q 040136 125 GANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVA 204 (681)
Q Consensus 125 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 204 (681)
...+++..|.+-..++.+..+. ...+...=.-.+.+.|+.++|..+++... ..+ ..|..+..++-.+|...|+.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~-~~~-~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALY-GLK-GTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhc-cCC-CCchHHHHHHHHHHHHHhhhhHH
Confidence 4568899999999998887642 22222222334568999999998888876 333 33778888999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----------hhHH
Q 040136 205 PNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNR----------VSEA 274 (681)
Q Consensus 205 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A 274 (681)
..+|++.... -|+......+..+|.+.+++.+-.++--++.+. ++-+...+-+++..+...-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999876 467777788888999999887766665555553 34556666666666654221 2235
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcC
Q 040136 275 LMLLEEMILMG-CTSDVQTFNDVIHGLCKVNRIHEAAKLVDR-MLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIP 352 (681)
Q Consensus 275 ~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 352 (681)
.+.++.+.+.+ -.-+..-...-...+...|.+++|.+++.. ..+.-..-+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 56666666543 111222233334556678889999998843 3333222233334455677778888887777666554
Q ss_pred CCChHHHHHHHHHHH----------------hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCChhHHHH
Q 040136 353 SANVVLLNTVINGYV----------------ISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLC---KQRRFGSALE 413 (681)
Q Consensus 353 ~~~~~~~~~l~~~~~----------------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~---~~~~~~~A~~ 413 (681)
..+..-|...++.+. ..+..+...+ ..+...... ....|-+-+.... ..|+.+++..
T Consensus 254 ~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~e-k~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 254 EKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIE-KAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred HhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHH-HHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHH
Confidence 411111332222211 1122222222 111111110 0111222222222 2344444433
Q ss_pred HHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040136 414 LVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIH 493 (681)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 493 (681)
.|-+ .-|..| .|..=+..|...=..+.-..++........... .+.+.+. -+...+.
T Consensus 330 ~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s------~~~k~l~------------~h~c~l~ 386 (932)
T KOG2053|consen 330 YYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSS------GDEKVLQ------------QHLCVLL 386 (932)
T ss_pred HHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcch------hhHHHHH------------HHHHHHH
Confidence 3221 112111 111111112111122222222222222111000 0000000 0111111
Q ss_pred HHHhcCC-----HHHHHHHHHHHH---hCC------CCCCH---------HHHHHHHHHHHHcCCHH---HHHHHHHHHH
Q 040136 494 AFLRRGS-----LHEAHKLVNDML---FRG------CPLDE---------ITYNGLIKALCNAGAVD---KGLGLFEEMM 547 (681)
Q Consensus 494 ~~~~~g~-----~~~A~~~~~~~~---~~~------~~~~~---------~~~~~l~~~~~~~g~~~---~A~~~~~~~~ 547 (681)
.-.-.|. -+....++.+.. ++| .-|+. .+.+.|++.+-+.++.. +|+.+++.-.
T Consensus 387 ~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~gl 466 (932)
T KOG2053|consen 387 LLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGL 466 (932)
T ss_pred HHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 1111111 112222221111 111 11221 24556778888888755 5555666655
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 548 RKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 548 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
... .-|..+--.+++.|+-.|-...|.++++.+--+.+.-|..-|- +...+...|++..+...++....- ..-+..-
T Consensus 467 t~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE 543 (932)
T KOG2053|consen 467 TKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKE 543 (932)
T ss_pred hcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-Hhhhhhh
Confidence 542 2255566678999999999999999999887665665654442 344566788998888888877663 1111111
Q ss_pred HHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcc
Q 040136 628 YNTLISWHFKEGLFDD---AFLILHKGVANGFVPNDATWYILVRNLVKEINM 676 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 676 (681)
-.-+|..-++.|.+.. ....-+++..+-......+-+..++.++..++.
T Consensus 544 ~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 544 TPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred hHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 1223333345555543 333444444322222334445555555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.6e-05 Score=73.77 Aligned_cols=224 Identities=10% Similarity=0.023 Sum_probs=144.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHh
Q 040136 400 HGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEG-QLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLL 478 (681)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 478 (681)
..+...+..++|+.+..++++.. +-+..+|+....++...| ++++++..++++.+.+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-------------------- 103 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-------------------- 103 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC--------------------
Confidence 33445567778888887777652 223345555545555555 45666666666655432
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 479 EGVTANTVTYNTLIHAFLRRGSL--HEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 479 ~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
.+..+|+.....+.+.|+. ++++.+++++++.. +-|..+|+....++.+.|++++++..++++++.+.. +..
T Consensus 104 ----knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~s 177 (320)
T PLN02789 104 ----KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNS 177 (320)
T ss_pred ----cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chh
Confidence 2555566555555555553 66788888887764 567888888888888888888888888888887654 566
Q ss_pred HHHHHHHHHHhc---CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCH
Q 040136 557 SCNILINGLCRT---RK----ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM----GCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 557 ~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
.|+.....+.+. |. .++++++..+++... +-|...|+.+...+... ++..+|...+.+..+.+ ..+.
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~ 255 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHV 255 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcH
Confidence 676666555544 22 246777777777642 33567787777777663 34566888888877642 3356
Q ss_pred HHHHHHHHHHHhcC------------------ChhHHHHHHHHHH
Q 040136 626 VTYNTLISWHFKEG------------------LFDDAFLILHKGV 652 (681)
Q Consensus 626 ~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 652 (681)
.....|++.|+... ..++|.+++..+.
T Consensus 256 ~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 256 FALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 67777888887532 2366778887774
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-05 Score=87.21 Aligned_cols=225 Identities=12% Similarity=0.075 Sum_probs=149.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAH 505 (681)
Q Consensus 426 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (681)
....|-..+....+.++.++|++++++++..= .+ .+- .--...|.++++.-..-|.-+...
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tI-N~------REe------------eEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTI-NF------REE------------EEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC-Cc------chh------------HHHHHHHHHHHhHHHhhCcHHHHH
Confidence 45567777777777888888888887776541 00 000 001235666666666667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 506 KLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
++|+++.+. ......|..|...|.+.+.+++|.++++.|.++ .......|...+..+.++.+-+.|..++++.++.
T Consensus 1518 kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~- 1593 (1710)
T KOG1070|consen 1518 KVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS- 1593 (1710)
T ss_pred HHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-
Confidence 888877765 223456777778888888888888888888776 2346677777888888888888888888887764
Q ss_pred CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--
Q 040136 586 LTPD---IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND-- 660 (681)
Q Consensus 586 ~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~-- 660 (681)
-|. .......++.-.+.|+.+.+..+|+..+.. .+--...|+.+++.-.++|+.+.++.+|++++..++.|-.
T Consensus 1594 -lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1594 -LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred -cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 333 233444455556778888888888887775 2334667888888888888888888888888877766543
Q ss_pred HHHHHHHHHHHhcCc
Q 040136 661 ATWYILVRNLVKEIN 675 (681)
Q Consensus 661 ~~~~~ll~~~~~~g~ 675 (681)
.-|...+..=...|+
T Consensus 1672 fffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1672 FFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHHHHHHHHHhcCc
Confidence 334444443333343
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.5e-06 Score=73.26 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKAL-CNAGA--VDKGLGLFEEMMRKGIKPSSISCNI 560 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~ 560 (681)
|...|..+...|...|++++|...|++..+.. |.+...+..+..++ ...|+ .++|..+++++++.+.. +...+..
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~ 149 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALML 149 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHH
Confidence 55555566666666666666666666655553 44555555555542 44444 35666666666554332 4455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 561 LINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
+...+...|++++|+..|+++++.
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555555666666666666665554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-05 Score=85.20 Aligned_cols=227 Identities=9% Similarity=0.043 Sum_probs=142.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCc---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVK-GCEP---NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRI 466 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 466 (681)
+...|-..|......++.++|.++.++.+.. ++.- -.-.|.++++.-...|.-+...++|+++.+..
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--------- 1527 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--------- 1527 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---------
Confidence 4456666666677777777777777766543 1111 12356666666666666666777777766542
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040136 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEM 546 (681)
Q Consensus 467 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 546 (681)
-.-..|..|...|.+.+..++|.++++.|.+. +......|...+..+.+..+-+.|..++.++
T Consensus 1528 ----------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1528 ----------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred ----------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 12345666777777777777777777777766 3345667777777777777777777777777
Q ss_pred HHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 040136 547 MRKGIK-PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD- 624 (681)
Q Consensus 547 ~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 624 (681)
++.=.+ -......-.+..-.+.|+.+.+..+|+..+.. .+--...|+.+++.-.++|+.+.++.+|+++...++.|-
T Consensus 1591 L~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1591 LKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 764111 12233344455556677777777777777664 233456677777777777777777777777777766654
Q ss_pred -HHHHHHHHHHHHhcCChhHH
Q 040136 625 -AVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 625 -~~~~~~l~~~~~~~g~~~~A 644 (681)
...|...+..--+.|+-..+
T Consensus 1670 mKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1670 MKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hHHHHHHHHHHHHhcCchhhH
Confidence 23455555555555554433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.1e-06 Score=77.15 Aligned_cols=168 Identities=18% Similarity=0.118 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDE---ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS--ISC 558 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~ 558 (681)
....+..+...+...|++++|...++++.... |.+. .++..+..++...|++++|...++++.+....... ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 56677788888999999999999999988763 3333 46677888999999999999999999986432121 245
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHH
Q 040136 559 NILINGLCRT--------RKANTALEFLRDMIHRGLTPDI-VTY-----------------NSLINGLCKMGCIQEALNL 612 (681)
Q Consensus 559 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~~~ 612 (681)
..+..++... |+.++|.+.++++... .|+. ..+ ..+...+.+.|++++|+..
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 5566666654 7889999999999875 3332 221 1345667888999999999
Q ss_pred HHHHHHCCC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 613 FDKLQAEGI-YP-DAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 613 ~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
++++.+..- .| ....+..++.++.+.|++++|..+++.+...
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999998510 12 2568889999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.7e-05 Score=73.13 Aligned_cols=203 Identities=7% Similarity=0.006 Sum_probs=96.8
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCc--CcH
Q 040136 128 KEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG-VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCH--KVA 204 (681)
Q Consensus 128 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~A 204 (681)
+..++|..+..++++..+ -+..+|.....++...| .+++++..++++.+ .. +.+..+|+....++.+.|.. +++
T Consensus 51 e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~-~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 51 ERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAE-DN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH-HC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 445555555555555443 23344444444444444 34556666555552 11 33334444443333344432 445
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCh----hHHHHH
Q 040136 205 PNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKS---NRV----SEALML 277 (681)
Q Consensus 205 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~----~~A~~~ 277 (681)
+.+++++++.+.+ +..+|+....++.+.|+++++++.++++++.+ +.|..+|+....++.+. |+. ++.++.
T Consensus 128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 5555565555422 45555555555555566666666666666554 33445555444443332 111 234444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 040136 278 LEEMILMGCTSDVQTFNDVIHGLCKV----NRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCR 337 (681)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (681)
..+++... +-|...|+-+...+... +...+|...+.+....+ +.+......|++.|+.
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 44444432 34455555555555442 23344555555544432 1234445555555553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-05 Score=80.21 Aligned_cols=212 Identities=13% Similarity=0.075 Sum_probs=119.0
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 040136 188 YNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSK 267 (681)
Q Consensus 188 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 267 (681)
-..+...+...|....|..+|+++.. +..++.+|+..|+.++|..+..+-.++ +|+...|..+.++...
T Consensus 401 q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 34445555666666666666655432 344555666666666666666665553 3566666666555555
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 040136 268 SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARAL 347 (681)
Q Consensus 268 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 347 (681)
..-+++|.++.+....+ +-..+.......++++++.+.++.-.+.. +.-..+|..+.-++.+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 55555565555543321 11111111223566666666666555432 22344555555566666666666666
Q ss_pred HhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040136 348 LNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAV 420 (681)
Q Consensus 348 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 420 (681)
|..... .+...||.+..+|.+.++-.+|.. .+.+..+.+ .-+-..|...+....+.|.+++|.+.+.++..
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~-~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR-KLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH-HHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 665544 334567777777777777777777 445555444 22444555566666777777777777777654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.1e-05 Score=82.57 Aligned_cols=169 Identities=11% Similarity=0.085 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHH
Q 040136 113 TFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVL 192 (681)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 192 (681)
....+..++..+...+++++|.++.+...+..+ -....|..+...+.+.++.+++..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~----------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL--N----------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh--h----------------hh
Confidence 445566666666666666666666665555543 2334444444455555554444333 1 11
Q ss_pred HHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 040136 193 DVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVS 272 (681)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 272 (681)
+......++..+..+...|... .-+...+..+..+|-+.|+.++|..+++++.+.+ +.|+.+.|.+...|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 2222222332222233333332 1233456666666666666666666666666665 55666666666666666 666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 273 EALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVR 319 (681)
Q Consensus 273 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (681)
+|.+++.+.... +...+++..+.+++.++...
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 666666655532 44455666666666666654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-05 Score=70.70 Aligned_cols=164 Identities=15% Similarity=0.117 Sum_probs=122.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 492 IHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKA 571 (681)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (681)
+..|...|+++.+..-.+.+... .. .+...++.+++...++..++.+. .+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~---~~---------~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP---LH---------QFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc---cc---------cccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCH
Confidence 45688999988875544332211 10 12235677888888888888753 4788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040136 572 NTALEFLRDMIHRGLTPDIVTYNSLINGL-CKMGC--IQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLIL 648 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 648 (681)
++|...+++..... +.+...+..+..++ ...|+ .++|.++++++.+.+ +-+..++..+...+...|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999863 33677788888764 67777 599999999999963 335778889999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 649 HKGVANGFVPNDATWYILVRNLVK 672 (681)
Q Consensus 649 ~~~~~~g~~~~~~~~~~ll~~~~~ 672 (681)
+++++. .+|+.... .+|.+...
T Consensus 168 ~~aL~l-~~~~~~r~-~~i~~i~~ 189 (198)
T PRK10370 168 QKVLDL-NSPRVNRT-QLVESINM 189 (198)
T ss_pred HHHHhh-CCCCccHH-HHHHHHHH
Confidence 999985 35555443 34455433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-07 Score=56.51 Aligned_cols=28 Identities=43% Similarity=0.694 Sum_probs=10.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHH
Q 040136 252 VPNSVVYQTLIHALSKSNRVSEALMLLE 279 (681)
Q Consensus 252 ~~~~~~~~~li~~~~~~~~~~~A~~~~~ 279 (681)
.||..+|+++|++|++.|++++|.++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333333333333333333333333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-05 Score=69.03 Aligned_cols=160 Identities=15% Similarity=0.073 Sum_probs=109.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 431 TILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVND 510 (681)
Q Consensus 431 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 510 (681)
..+-..+...|+-+.+..+........ +.+.......+....+.|++..|...+++
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~------------------------~~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY------------------------PKDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC------------------------cccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 444555666666666655555443321 23555566677777788888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 511 MLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI 590 (681)
Q Consensus 511 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 590 (681)
..... |+|..+|+.+.-+|.+.|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+. -|.
T Consensus 126 A~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~ 202 (257)
T COG5010 126 AARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADS 202 (257)
T ss_pred HhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-Cch
Confidence 77663 778888888888888888888888888888776322 556667777777778888888888877776532 255
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
.+-..+.-+....|++++|.++...-.
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhhccccc
Confidence 556666667777888888877765544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-07 Score=56.14 Aligned_cols=28 Identities=61% Similarity=1.166 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 587 TPDIVTYNSLINGLCKMGCIQEALNLFD 614 (681)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (681)
.||..+|++||.+|++.|++++|.++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333333333333333333333333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-05 Score=68.63 Aligned_cols=94 Identities=6% Similarity=-0.153 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFK 637 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 637 (681)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|+++.+.+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555566666666666666666542 2245556666666666666666666666666532 2345556666666666
Q ss_pred cCChhHHHHHHHHHHH
Q 040136 638 EGLFDDAFLILHKGVA 653 (681)
Q Consensus 638 ~g~~~~A~~~~~~~~~ 653 (681)
.|++++|...++++++
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666665
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0016 Score=62.87 Aligned_cols=146 Identities=12% Similarity=0.185 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 040136 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKG-IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVT-YNSLI 597 (681)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~ 597 (681)
..+|...++.-.+...++.|..+|-++.+.+ ..+++..+++++..++ +|+...|.++|+--+.. -||... .+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777887777777888999999988887 5677888888887664 67888888888876654 344433 35566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 598 NGLCKMGCIQEALNLFDKLQAEGIYPD--AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLV 671 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 671 (681)
..+...++-+.|..+|+..++. +..+ ..+|..+++.-..-|+...+..+=+++.+ ..|...+.....+.+.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 7777888889999999977664 3334 56888888888888999888888888877 4565555544444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0019 Score=63.85 Aligned_cols=98 Identities=9% Similarity=0.072 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNIL 561 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l 561 (681)
++.++++++..||. ++.+-|.++|+--++. .+.++.--...++-+...++-..|..+|++.+..++.|+ ...|..+
T Consensus 401 hVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~ 478 (656)
T KOG1914|consen 401 HVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRM 478 (656)
T ss_pred hhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHH
Confidence 45555666665443 5566666666655444 233444444555566666666666666666666544333 3556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 040136 562 INGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
+..-..-|+...++++-+++..
T Consensus 479 l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 479 LEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666666554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00027 Score=69.05 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=119.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 040136 494 AFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS-SISCNILINGLCRTRKAN 572 (681)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 572 (681)
.+...|+.++|+..++.++.. .|.|+..+......+.+.++.++|.+.++.++.. .|+ ....-.+..+|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 356778999999999998876 4667777788888999999999999999999986 344 566677888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 573 TALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 573 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
+|+.++++.... .+-|+..|..|.++|...|+..+|..... ..|...|++++|...+..+.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHH
Confidence 999999998876 45688899999999999999888765443 34667799999999998888
Q ss_pred HCCCCCCHHHHH
Q 040136 653 ANGFVPNDATWY 664 (681)
Q Consensus 653 ~~g~~~~~~~~~ 664 (681)
+. ..++..+|.
T Consensus 453 ~~-~~~~~~~~a 463 (484)
T COG4783 453 QQ-VKLGFPDWA 463 (484)
T ss_pred Hh-ccCCcHHHH
Confidence 75 355555553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00032 Score=62.38 Aligned_cols=167 Identities=15% Similarity=0.169 Sum_probs=131.1
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 482 TANTV-TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNI 560 (681)
Q Consensus 482 ~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 560 (681)
.++.. .|..++-+....|+.+.|..+++.+... +|-+..+-..-...+-..|.+++|+++++.+++.+ +.|.+++--
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KR 125 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKR 125 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHH
Confidence 34543 3455666677889999999999998877 35455544444445667899999999999999986 346777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLISWHFKEG 639 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 639 (681)
=+.....+|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-. .| +...+..+.+.++-.|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHh
Confidence 777778889988999999998886 7779999999999999999999999999999974 55 4555667888776655
Q ss_pred ---ChhHHHHHHHHHHH
Q 040136 640 ---LFDDAFLILHKGVA 653 (681)
Q Consensus 640 ---~~~~A~~~~~~~~~ 653 (681)
+..-|+++|.+.++
T Consensus 203 g~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 203 GAENLELARKYYERALK 219 (289)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45678999999998
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.002 Score=62.41 Aligned_cols=217 Identities=18% Similarity=0.168 Sum_probs=121.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 427 IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 427 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
+.++..++....+.++...|...+.-+.-.++.....++.--..+.+.++... |...++.+ ..=+.
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~----DD~~~Tkl----------r~yL~ 363 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCE----DDESYTKL----------RDYLN 363 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhc----chHHHHHH----------HHHHH
Confidence 34567777777777888887777777666554444444443334444444432 22222221 12233
Q ss_pred HHHHHHhCCCCCCHHHHHHHH---HHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHh---cCCHHHHH
Q 040136 507 LVNDMLFRGCPLDEITYNGLI---KALCNAGA-VDKGLGLFEEMMRKGIKPSSISCNILIN----GLCR---TRKANTAL 575 (681)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~----~~~~---~g~~~~A~ 575 (681)
+++......+.- ......|+ .-+-+.|. -++|+.+++.+++-. .-|...-|.+.. .|.. .....+-+
T Consensus 364 lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLl 441 (549)
T PF07079_consen 364 LWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLL 441 (549)
T ss_pred HHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344433332111 11111121 12334444 677888888777641 224333333221 2211 12334444
Q ss_pred HHHHHHHHCCCCCCH----HHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 040136 576 EFLRDMIHRGLTPDI----VTYNSLING--LCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILH 649 (681)
Q Consensus 576 ~~~~~~~~~~~~p~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 649 (681)
++-+-+.+.|++|-. ..-|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..++-++....++++|..++.
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444445556777643 334444443 4578999999887777776 78999999999999999999999999887
Q ss_pred HHHHCCCCCCHHHHHHH
Q 040136 650 KGVANGFVPNDATWYIL 666 (681)
Q Consensus 650 ~~~~~g~~~~~~~~~~l 666 (681)
.+ +|+..+++.-
T Consensus 520 ~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 520 KL-----PPNERMRDSK 531 (549)
T ss_pred hC-----CCchhhHHHH
Confidence 65 5666666543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.3e-05 Score=67.31 Aligned_cols=165 Identities=16% Similarity=0.092 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
|... ..+-..+...|+-+....+....... .+.|.......+....+.|++.+|+..++++.... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3444 56667788889999888888886654 36677788889999999999999999999999864 568899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDD 643 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 643 (681)
+|.+.|+.+.|..-|.+..+. ..-+...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.-.....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 999999999999999999985 22355678888888999999999999999999863 3367777888888999999999
Q ss_pred HHHHHHHHHH
Q 040136 644 AFLILHKGVA 653 (681)
Q Consensus 644 A~~~~~~~~~ 653 (681)
|..+...-+.
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9998766553
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00013 Score=78.83 Aligned_cols=232 Identities=11% Similarity=0.091 Sum_probs=142.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPN-IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEA 469 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a 469 (681)
+...+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++++++..+ .+... .....++...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~---~~~~~~~~~v 102 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS---FSQNLKWAIV 102 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh---cccccchhHH
Confidence 3455666666666667777777766655544 232 33333333355566666655554 22211 1122233333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 470 LGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
..++..+... .-+...+..+..+|-+.|+.++|..+|+++++.. +.|+.+.|-+...|... ++++|.+++.+++..
T Consensus 103 e~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 103 EHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 3333344432 2255688889999999999999999999999986 77999999999999999 999999999998875
Q ss_pred CCCCCHHHHHHHHH---HH--HhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 550 GIKPSSISCNILIN---GL--CRTRKANTALEFLRDMIHR-GLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP 623 (681)
Q Consensus 550 ~~~p~~~~~~~l~~---~~--~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 623 (681)
-+ +..-|+.+.. -+ ....+++.-.++.+.+... |..--..++-.+...|...++|++++.+++.+.+.. +-
T Consensus 179 ~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~ 255 (906)
T PRK14720 179 FI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NK 255 (906)
T ss_pred HH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-Cc
Confidence 11 1111111111 11 1122334444444444433 222234455566677888889999999999999863 33
Q ss_pred CHHHHHHHHHHHH
Q 040136 624 DAVTYNTLISWHF 636 (681)
Q Consensus 624 ~~~~~~~l~~~~~ 636 (681)
|.....-++.+|.
T Consensus 256 n~~a~~~l~~~y~ 268 (906)
T PRK14720 256 NNKAREELIRFYK 268 (906)
T ss_pred chhhHHHHHHHHH
Confidence 5667777777776
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-05 Score=72.08 Aligned_cols=187 Identities=9% Similarity=0.009 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCH-HhH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIIC--RESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTF-RSY 188 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 188 (681)
.....+...+..+...|+++.|...++++.+..+.. ...++..+..+|.+.|++++|...|+++.+...-.+.. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345556666666667777777777777766654321 12355566666777777777777777666322211111 123
Q ss_pred HHHHHHHHhc--------CCcCcHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH
Q 040136 189 NVVLDVLVAG--------NCHKVAPNLFYDMLSKGISPTV-YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQ 259 (681)
Q Consensus 189 ~~ll~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 259 (681)
..+..++.+. |++++|.+.|+++.+.. |+. .....+... .. ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~------~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHH------HH--------HHHHH
Confidence 3333333332 44555555555555442 221 111111100 00 000 00 00011
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 260 TLIHALSKSNRVSEALMLLEEMILMG--CTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLV 318 (681)
Q Consensus 260 ~li~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (681)
.+...+.+.|++++|...+++..+.. .+.....+..+..++.+.|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445556666666666666665431 111234555566666666666666666555543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0006 Score=61.18 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=62.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 493 HAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN----AGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT 568 (681)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (681)
..+.+..+.+-|.+.+++|.+.. +..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh
Confidence 33455556666666666665532 44455555555443 23456666666666554 345666666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 040136 569 RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI-QEALNLFDKLQA 618 (681)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 618 (681)
|++++|..++++.+.+. .-++.+...++-+-...|.. +...+.+.++..
T Consensus 221 ~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred cCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 66666666666666542 22344443333333333332 333344444444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.9e-05 Score=79.02 Aligned_cols=147 Identities=10% Similarity=0.054 Sum_probs=122.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 482 TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNIL 561 (681)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 561 (681)
+.++..+..|.....+.|..++|..+++...+. .|.+......+...+.+.+++++|+...++....... +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 346888889999999999999999999999987 3667778888899999999999999999999987543 66778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 562 INGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
..++.+.|++++|..+|+++... .+-+..++..+..++.+.|+.++|...|++..+. ..|....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 89999999999999999999984 2334788889999999999999999999999886 344455554433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0001 Score=78.89 Aligned_cols=134 Identities=9% Similarity=0.031 Sum_probs=101.4
Q ss_pred CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH
Q 040136 182 QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPT-VYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQT 260 (681)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 260 (681)
+.+...+-.|..+..+.|.+++|..+++...+. .|+ ......+...+.+.+++++|...+++..... +.+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 456777777778888888888888888888776 344 4566677777888888888888888888775 455666777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 261 LIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVR 319 (681)
Q Consensus 261 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (681)
+..++.+.|++++|..+|+++...+ +.+..++..+...+-..|+.++|...|++..+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777888888888888888888743 344677777888888888888888888887764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.2e-05 Score=64.34 Aligned_cols=92 Identities=10% Similarity=-0.043 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTR 569 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 569 (681)
.+..++...|++++|...|+...... |.+...+..+..++...|++++|...|+++.+... .+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcC
Confidence 34444445555555555555544442 33444445555555555555555555555554321 13444444444455555
Q ss_pred CHHHHHHHHHHHHH
Q 040136 570 KANTALEFLRDMIH 583 (681)
Q Consensus 570 ~~~~A~~~~~~~~~ 583 (681)
+.++|+..|++.++
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.8e-05 Score=65.74 Aligned_cols=103 Identities=13% Similarity=0.079 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWH 635 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 635 (681)
.....++..+...|++++|.+.++++...+ +.+...|..+..++...|++++|...+++..+.+ +.+...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 344455555666666666666666665532 2245555566666666666666666666665542 33445555566666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHH
Q 040136 636 FKEGLFDDAFLILHKGVANGFVPNDAT 662 (681)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~~g~~~~~~~ 662 (681)
...|++++|...+++.++ ..|+...
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 96 LALGEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred HHcCCHHHHHHHHHHHHH--hccccch
Confidence 666666666666666665 3344444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.7e-05 Score=63.81 Aligned_cols=98 Identities=17% Similarity=0.057 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
+......+...+...|++++|...|+.+...+. .+...+..+...+...|++++|...+++..+.+ +.+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 334455555566666666666666666665432 245556666666666666666666666665542 334455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 040136 599 GLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~ 618 (681)
++...|++++|...|+...+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666777777776666666
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00084 Score=65.75 Aligned_cols=136 Identities=20% Similarity=0.270 Sum_probs=94.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 040136 231 CMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSD-VQTFNDVIHGLCKVNRIHEA 309 (681)
Q Consensus 231 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a 309 (681)
...|++++|+..++.+.+.- |.|+..+......+.+.++..+|.+.++++... .|+ ....-.+..++.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 35677778888877776653 555666666777777888888888888877765 344 44555566777778888888
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040136 310 AKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLS 385 (681)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (681)
+.+++..... .+-|...|..|..+|...|+..++..-..+ .|...|++++|+. +.....+
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE--------------~~~~~G~~~~A~~-~l~~A~~ 453 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE--------------GYALAGRLEQAII-FLMRASQ 453 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH--------------HHHhCCCHHHHHH-HHHHHHH
Confidence 8777777655 344677777788888877777777665443 6777777777777 4444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00013 Score=62.19 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 040136 533 AGAVDKGLGLFEEMMRKGIKP--SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI--VTYNSLINGLCKMGCIQE 608 (681)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 608 (681)
.++.+.+...++.+.+....- .....-.+...+...|++++|...|+........|+. ...-.|..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555542111 0122233444555556666666666555554311111 122334455555666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 609 ALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKG 651 (681)
Q Consensus 609 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 651 (681)
|+..++..... ......+....++|.+.|++++|...|++.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66665443221 122334445555666666666666665543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00023 Score=60.68 Aligned_cols=127 Identities=17% Similarity=0.174 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD---EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS--ISCNI 560 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ 560 (681)
..|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......|+. .....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3455555555 4888999999999988873 434 234444667888999999999999999997633332 34455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKL 616 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (681)
+...+...|++++|+..++..... ......+.....++.+.|++++|+..|++.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788899999999999999775432 334556778889999999999999999875
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00018 Score=71.12 Aligned_cols=122 Identities=18% Similarity=0.206 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT 568 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (681)
.+++..+...++++.|.++++++.+.. |+ ....++..+...++-.+|.+++++.++.. +.+...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344444444555555555555555442 22 22234444445555555555555555432 22344444444455555
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 569 RKANTALEFLRDMIHRGLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
++++.|+++.+++.+. .|+ ..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555555542 332 3455555555555555555555555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00028 Score=69.76 Aligned_cols=125 Identities=19% Similarity=0.196 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
.....|+..+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|++++++.++. .+-+...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 334445555556667777777777777653 333 334666666667777777777777754 233555666666667
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
.+.++++.|+.+.+++.+. .|+ ..+|..|+.+|...|++++|+..++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777777773 554 4477777777777777777777766654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0042 Score=55.50 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=97.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040136 152 FILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALC 231 (681)
Q Consensus 152 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 231 (681)
+..++-+....|+.+.|...++++..++.-++-+.- .-.-.+-..|++++|.++++.+++.+ +.|..++-.-+-..-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~--lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGK--LKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHH--HHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 334455555667777777777776644321222221 11222345677777777777777765 234555555555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHH
Q 040136 232 MVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVN---RIHE 308 (681)
Q Consensus 232 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~ 308 (681)
..|+.-+|++-+....+. +..|..+|.-+...|...|++++|.-.++++.-.. |.+...+..+...+.-.| +.+.
T Consensus 132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 666666777777766664 46677777777777777777777777777777542 334444444444443333 4566
Q ss_pred HHHHHHHHHHC
Q 040136 309 AAKLVDRMLVR 319 (681)
Q Consensus 309 a~~~~~~~~~~ 319 (681)
+.+++.+.++.
T Consensus 210 arkyy~~alkl 220 (289)
T KOG3060|consen 210 ARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHh
Confidence 77777777765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.035 Score=56.92 Aligned_cols=205 Identities=16% Similarity=0.144 Sum_probs=113.0
Q ss_pred CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHC-CCCCC--------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 040136 182 QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSK-GISPT--------VYTFGVVMKALCMVNEVDSACSLLRDMTKHGCV 252 (681)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~p~--------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 252 (681)
.|.+..|..+...-...-.++.|...|-+...- |++.- ...-..=+. .--|++++|.+++-++.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 677788887776666666666666666443321 22100 000001111 12377788888877776654
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 040136 253 PNSVVYQTLIHALSKSNRVSEALMLLEEMILM-GCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVL 331 (681)
Q Consensus 253 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (681)
..|..+.+.|++-...++++.--.. .-..-..+|+.+..-+.....|++|.+++..-.. ....
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 2455666777776666655431100 0011134667777777777777777777765321 1234
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 040136 332 MHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSA 411 (681)
Q Consensus 332 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A 411 (681)
+.++.+..++++-+.+...+++ +....-.+.+++...|..++|.+.+++. +.+ .+.+..|...+++.+|
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~----s~p------kaAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR----SLP------KAAVHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc----cCc------HHHHHHHHHHHHHHHH
Confidence 5566666666665555555444 3345556677777777777777733221 111 2345566677777777
Q ss_pred HHHHHH
Q 040136 412 LELVNA 417 (681)
Q Consensus 412 ~~~~~~ 417 (681)
.++-+.
T Consensus 898 velaq~ 903 (1189)
T KOG2041|consen 898 VELAQR 903 (1189)
T ss_pred HHHHHh
Confidence 766544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0003 Score=69.87 Aligned_cols=123 Identities=13% Similarity=0.205 Sum_probs=71.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040136 516 CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK--GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTY 593 (681)
Q Consensus 516 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 593 (681)
.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..++++++++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3455555666666665555666666666665543 11111233346666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 594 NSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKE 638 (681)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 638 (681)
|.|++.+.+.|++..|.++.-.|...+...+..|+...+.+|++.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666666554444555555544444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.8e-05 Score=47.39 Aligned_cols=32 Identities=50% Similarity=0.718 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 040136 258 YQTLIHALSKSNRVSEALMLLEEMILMGCTSD 289 (681)
Q Consensus 258 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~ 289 (681)
||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.9e-05 Score=47.30 Aligned_cols=32 Identities=56% Similarity=1.067 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 593 YNSLINGLCKMGCIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 624 (681)
|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.012 Score=56.42 Aligned_cols=52 Identities=17% Similarity=0.035 Sum_probs=25.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEE 280 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 280 (681)
..+.+..++..|+..+...++.. +.+...|..-...+...|++++|.--.+.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~ 108 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQ 108 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhh
Confidence 34444555555555555555543 33344444444445555555555444333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.011 Score=50.11 Aligned_cols=133 Identities=15% Similarity=0.110 Sum_probs=104.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 040136 517 PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG---LTPDIVTY 593 (681)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~ 593 (681)
.|+......|..+....|+..+|...|++...--..-|....-.+.++....+++..|...++++.+.+ -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 566666677888889999999999999998875445577788888888889999999999999988752 2333 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 594 NSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
-.+...+...|..+.|+..|+.+.. ..|+...-......+.+.|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4567788889999999999999988 477877767777888889988888776666554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0016 Score=67.66 Aligned_cols=143 Identities=15% Similarity=0.065 Sum_probs=86.6
Q ss_pred CCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 040136 516 CPLDEITYNGLIKALCNA-----GAVDKGLGLFEEMMRKGIKPS-SISCNILINGLCRT--------RKANTALEFLRDM 581 (681)
Q Consensus 516 ~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 581 (681)
.+.+...|...+.+.... ++.+.|..+|+++++. .|+ ...+..+..++... ++...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 355666666666654332 1255677777777764 333 23333333322221 1223444444443
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 040136 582 IHR-GLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 582 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
... ....+...|..+.-.....|++++|...++++++. .|+...|..+.+.+...|+.++|.+.++++.. +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 12334566766666666678888888888888884 56777888888888888888888888888886 56666
Q ss_pred HHHH
Q 040136 661 ATWY 664 (681)
Q Consensus 661 ~~~~ 664 (681)
.+|.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 6553
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.025 Score=54.46 Aligned_cols=68 Identities=16% Similarity=0.065 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 481 VTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 481 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
..++...|.....+..+.|+.++|+.--++..... +.-...+..-..++...+++++|.+-|+...+.
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777888888888888887776542 111122223334555677888888888887775
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0007 Score=64.82 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN-AGAVDKGLGLFEEMMRKGIKPSSISCNILINGL 565 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (681)
+|..++....+.+..+.|..+|.++.+.+ ..+..+|......-.+ .++.+.|..+|+..++. ...+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555555555555332 2233333333333222 34444455555555554 223445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDI---VTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
...++.+.|..+|++.... +.++. ..|..+++.-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 22211 3555555555555555555555555555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00044 Score=63.37 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=62.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 040136 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLINGLCKMGC 605 (681)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 605 (681)
.+-..+.+++.+|+..|.++++.... |.+-|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 33445566777777777777765322 5556666666777777777777766666653 333 3566667777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 606 IQEALNLFDKLQAEGIYPDAVTYNT 630 (681)
Q Consensus 606 ~~~A~~~~~~~~~~~~~p~~~~~~~ 630 (681)
+++|++.|++.++ +.|+..+|-.
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHH
Confidence 7777777777766 5666655544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.8e-05 Score=45.95 Aligned_cols=31 Identities=32% Similarity=0.478 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 040136 257 VYQTLIHALSKSNRVSEALMLLEEMILMGCT 287 (681)
Q Consensus 257 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 287 (681)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.066 Score=55.04 Aligned_cols=212 Identities=13% Similarity=0.071 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH-cCCCCCHHHHHH------HHHHHHhCCChHHHHHHHHHcHhhcCCCC
Q 040136 111 CHTFDVYYVLIDKLGANKEFKVIDSVLLQMKE-EGIICRESLFIL------IMKYYGRGGVPGQATRLLLDMKSVYGCQP 183 (681)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 183 (681)
.|.+..|..++......-+++.|+..|-+... .|+..-...... -...-+--|++++|.++|-++- ..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~d-----rr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDAD-----RR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccc-----hh
Confidence 36677777777776666677777777665543 222111111000 0111122366666666666655 12
Q ss_pred CHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 040136 184 TFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGI--SPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTL 261 (681)
Q Consensus 184 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 261 (681)
| ..|..+.+.|++-.+.++++.--. +. .--...++.+...+.....+++|.+.+..-.. ....
T Consensus 764 D-----LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 764 D-----LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred h-----hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 2 223444445554444443321000 00 00123455555566665666666665554221 1234
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCH
Q 040136 262 IHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRV 341 (681)
Q Consensus 262 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 341 (681)
+.++.+..++++-..+.+.+ +.|....-.+...+...|.-++|.+.+-+. +.+ ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHHHHHHH
Confidence 55555555555444443333 334455556666777777777776655432 111 2345556666677
Q ss_pred HHHHHHHhhcCCCCh
Q 040136 342 DEARALLNKIPSANV 356 (681)
Q Consensus 342 ~~A~~~~~~~~~~~~ 356 (681)
.+|.++-++..-|.+
T Consensus 895 ~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 895 GEAVELAQRFQLPQV 909 (1189)
T ss_pred HHHHHHHHhccchhH
Confidence 777776665544443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00057 Score=53.21 Aligned_cols=93 Identities=22% Similarity=0.242 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 559 NILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKE 638 (681)
Q Consensus 559 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 638 (681)
..++..+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.++...+.. +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344445555566666666666555431 1223445555555556666666666666655532 22334555555666666
Q ss_pred CChhHHHHHHHHHHH
Q 040136 639 GLFDDAFLILHKGVA 653 (681)
Q Consensus 639 g~~~~A~~~~~~~~~ 653 (681)
|++++|...+.+..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666666554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.8e-05 Score=45.26 Aligned_cols=31 Identities=39% Similarity=0.684 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQAEGIY 622 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 622 (681)
+|+.++.+|.+.|+++.|.++|+.|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444333
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00061 Score=67.70 Aligned_cols=125 Identities=16% Similarity=0.216 Sum_probs=102.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 479 EGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR--GCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 479 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
.+.+.+......+++.+....+.+.+..++-+.... ....-+.|..++++.|.+.|..++++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445567788888888888888899999988888765 222334456789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM 603 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 603 (681)
+++.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988877777777776666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00098 Score=66.33 Aligned_cols=100 Identities=10% Similarity=-0.010 Sum_probs=72.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC 605 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 605 (681)
-...+...|++++|+..|+++++.... +...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 345566778888888888888876433 56777777888888888888888888887752 2356677777788888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 606 IQEALNLFDKLQAEGIYPDAVTYN 629 (681)
Q Consensus 606 ~~~A~~~~~~~~~~~~~p~~~~~~ 629 (681)
+++|+..|+++++. .|+.....
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~ 107 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFT 107 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHH
Confidence 88888888888873 55544333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=8e-05 Score=56.53 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHH
Q 040136 568 TRKANTALEFLRDMIHRGL-TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAF 645 (681)
Q Consensus 568 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 645 (681)
.|+++.|+.+++++.+... .++...+-.+..++.+.|++++|+.++++ .+ ..+. ......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4566666666666666422 11333444466666666666666666666 22 1222 233334456666667777766
Q ss_pred HHHHH
Q 040136 646 LILHK 650 (681)
Q Consensus 646 ~~~~~ 650 (681)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.062 Score=52.53 Aligned_cols=141 Identities=11% Similarity=0.104 Sum_probs=85.1
Q ss_pred HhcCCCChHHHHHHHHHhhhCCC---CCCCHHHH-HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHH--HH
Q 040136 87 LLRLPLDVDTSMEIFTWAGSQEG---YCHTFDVY-YVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKY--YG 160 (681)
Q Consensus 87 ~l~~~~~~~~al~~~~~~~~~~~---~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 160 (681)
+|+.+++..+|-++|.......- +....+++ ..+++++. ..+.+.....+....+.... ..|..|..+ .-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~---s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGK---SAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCC---chHHHHHHHHHHH
Confidence 45668899999999988755422 22222333 34445554 45667777777776664422 223333222 23
Q ss_pred hCCChHHHHHHHHHcHhhc-CCC------------CCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCC----CCCChhhH
Q 040136 161 RGGVPGQATRLLLDMKSVY-GCQ------------PTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKG----ISPTVYTF 223 (681)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~-~~~------------~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~----~~p~~~~~ 223 (681)
+.|.+++|.+.+..-.... +.+ +|...=+..+..+...|++.++..++++|...= ...+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 7788899988887665221 111 122223455678889999999999888887653 33677888
Q ss_pred HHHHHHHH
Q 040136 224 GVVMKALC 231 (681)
Q Consensus 224 ~~ll~~~~ 231 (681)
+.++-.+.
T Consensus 171 d~~vlmls 178 (549)
T PF07079_consen 171 DRAVLMLS 178 (549)
T ss_pred HHHHHHHh
Confidence 87655544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0026 Score=56.14 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
..+..+...+...|++++|...|+++++....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455555556666666666666666665432221 2455556666666666666666666666531 113444445555
Q ss_pred HHHhcCCHHH
Q 040136 599 GLCKMGCIQE 608 (681)
Q Consensus 599 ~~~~~g~~~~ 608 (681)
++...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555555433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.002 Score=52.81 Aligned_cols=24 Identities=17% Similarity=-0.071 Sum_probs=9.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 040136 630 TLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.+..++.+.|++++|.+.++++++
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHH
Confidence 333334444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0013 Score=53.99 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK--PSSISCNILINGLCRTRKANTALEFLRDMIHRGLT--PDIVTYNSL 596 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l 596 (681)
.++..++..+.+.|++++|...|..+.+.... .....+..+..++.+.|++++|.+.++++...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788889999999999999999886322 12456777899999999999999999999875211 124567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 040136 597 INGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
..++.+.|+.++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 88999999999999999999986
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.006 Score=58.75 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-----CHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 394 TFNILIHGLCKQRRFGSALELVNAMAVKGCEP-----NIV-TYTILVDGFCKEGQLEKANIIINEMLAKGLS 459 (681)
Q Consensus 394 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 459 (681)
.+..+...+.+.|++++|.++|+++....... +.. .+-..+-++...|++..|...+++.....+.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45667778889999999999999887643221 221 2233344566788999999888888766433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.013 Score=54.66 Aligned_cols=160 Identities=14% Similarity=0.110 Sum_probs=103.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITY---NGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
.....+...|++++|.+.|+.+.... |-+.... -.++.++.+.+++++|...+++.++..+.-...-+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34445677899999999999988863 4344433 3456778899999999999999988743322233333333322
Q ss_pred h--c---------------CC---HHHHHHHHHHHHHCCCCCCHHH-----------H-------HHHHHHHHhcCCHHH
Q 040136 567 R--T---------------RK---ANTALEFLRDMIHRGLTPDIVT-----------Y-------NSLINGLCKMGCIQE 608 (681)
Q Consensus 567 ~--~---------------g~---~~~A~~~~~~~~~~~~~p~~~~-----------~-------~~l~~~~~~~g~~~~ 608 (681)
. . .+ ..+|++.|+++++. -|+..- - -.+..-|.+.|.+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~A 193 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVA 193 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 1 1 12 34566777777764 333211 0 123455778888888
Q ss_pred HHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 609 ALNLFDKLQAE--GIYPDAVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 609 A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
|+.-++.+++. +.+........++.+|.+.|..++|.++...+.
T Consensus 194 A~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 194 VVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 88888888886 222234566677888888888888888776654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0012 Score=63.13 Aligned_cols=144 Identities=10% Similarity=0.169 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR-TRKANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
.+|..++....+.+..+.|+.+|.++.+.+ ..+...|-..+..-.. .++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467888888888888999999999998653 2244555555555333 56677799999998886 56677888899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQAEGIYPDA---VTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRN 669 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 669 (681)
+...|+.+.|..+|++.+.. +.++. ..|...++.-.+.|+++.+.++.+++.+ ..|+......+++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~r 149 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDR 149 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHH
Confidence 99999999999999999875 33333 4899999999999999999999999987 45555444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.032 Score=50.24 Aligned_cols=129 Identities=10% Similarity=0.090 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHH
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG-----IKPSSISCNILIN 563 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~ 563 (681)
+.++..+.-.|.+.-...++++.++...+.++.....|+..-.+.|+.+.|...|++..+.. +.-+.........
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34445555556666666666666665445556666666666666666666666666554431 1112222222233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.|.-++++..|...+.++...+ .-|+...|.-.-++.-.|+..+|++.++.|.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444556666666666665542 22333333333333444666666666666665
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0065 Score=56.33 Aligned_cols=117 Identities=13% Similarity=0.097 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHH
Q 040136 465 RIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG---AVDKGLG 541 (681)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~ 541 (681)
..+....-++.-.+.++. |...|..|..+|...|+...|..-|....+. .++++..+..+..++.... ...++..
T Consensus 137 ~~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 344444444444444332 6666666666677777777776666666665 2556666666665544322 2355666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 542 LFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
+|++++..+.. |+.+...|...+...|++.+|...|+.|++.
T Consensus 215 ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 215 LLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66666665422 5555566666666666666666666666664
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0014 Score=50.98 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 525 GLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG 604 (681)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (681)
.+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.+++..... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 344445555666666666665555421 123445555555555666666666666655532 223345555555666666
Q ss_pred CHHHHHHHHHHHHH
Q 040136 605 CIQEALNLFDKLQA 618 (681)
Q Consensus 605 ~~~~A~~~~~~~~~ 618 (681)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666665554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=60.74 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=97.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 492 IHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKA 571 (681)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (681)
.+-+.+.+++++|+..|.+.++.. |-|++.|.-=..+|++.|.++.|++-.+..+..+.. -..+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcH
Confidence 556778899999999999999983 678888888899999999999999999988885321 347899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHH---HHHHHHHHHHHCCCCCCH
Q 040136 572 NTALEFLRDMIHRGLTPDIVTYNSLINGL-CKMGCIQ---EALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~---~A~~~~~~~~~~~~~p~~ 625 (681)
++|++.|++.++ +.|+-.+|..=+... .+.+... .+..-++-....|..|+.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 999999999998 678777765444332 2333333 344444444444544554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0057 Score=51.20 Aligned_cols=93 Identities=8% Similarity=-0.141 Sum_probs=52.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 525 GLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG 604 (681)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (681)
.+...+...|++++|..+|+.+....+. +..-|..|..++...|++++|+..|......+ +-|+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3444455566666666666666554322 34444555555666666666666666665543 224455555566666666
Q ss_pred CHHHHHHHHHHHHHC
Q 040136 605 CIQEALNLFDKLQAE 619 (681)
Q Consensus 605 ~~~~A~~~~~~~~~~ 619 (681)
+.+.|++.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666655553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0021 Score=64.00 Aligned_cols=102 Identities=11% Similarity=0.013 Sum_probs=81.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 491 LIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK 570 (681)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 570 (681)
-...+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..++++++... .+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence 3456677899999999999998874 66788888888899999999999999999988643 266778888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 571 ANTALEFLRDMIHRGLTPDIVTYNSL 596 (681)
Q Consensus 571 ~~~A~~~~~~~~~~~~~p~~~~~~~l 596 (681)
+++|+..|++.++. .|+......+
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~ 109 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 99999999998874 4554443333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0021 Score=61.34 Aligned_cols=133 Identities=15% Similarity=0.061 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMR----KGIK-PSSISCNILINGLCRTRKANTALEFLRDMIHR----GL-TPDI 590 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~ 590 (681)
..|..|.+.|.-.|+++.|+...+.-+. -|-+ .....+..+.+++.-.|+++.|.+.|+..... |- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566667777778888888877654332 1211 12356777888888889999998888875432 11 1233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAE-----GIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.+.-+|...|.-..++++|+.++.+-... ...-....+.+|..++...|..+.|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45557778888788888888887764432 1122456778888888888888888877776655
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0028 Score=53.03 Aligned_cols=98 Identities=8% Similarity=-0.133 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
....-.+...+...|++++|.++|+-+...+ +-+..-|-.|.-++...|++++|+..+..+.... +-|...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3445566777889999999999999998753 2356778889999999999999999999999964 3457788999999
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 040136 635 HFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~ 654 (681)
+...|+.+.|++.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999874
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0032 Score=60.66 Aligned_cols=140 Identities=12% Similarity=0.095 Sum_probs=83.8
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCH
Q 040136 523 YNGLIKALCNA-GAVDKGLGLFEEMMRK----GIKPS--SISCNILINGLCRTRKANTALEFLRDMIHRGLT-----PDI 590 (681)
Q Consensus 523 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~ 590 (681)
+..+...|... |++++|++.|+++.+. + .+. ...+..++..+.+.|++++|.++|++....... .+.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 33445556666 8899999999888764 2 111 345667788899999999999999998874222 122
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHH
Q 040136 591 V-TYNSLINGLCKMGCIQEALNLFDKLQAE--GIYPD--AVTYNTLISWHFK--EGLFDDAFLILHKGVANGFVPNDATW 663 (681)
Q Consensus 591 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~~ 663 (681)
. .+-..+-++...||...|.+.+++.... ++..+ ......|+.++-. ...+++|..-|+.+. +.|..-.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~----~ld~w~~ 271 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS----RLDNWKT 271 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC----ccHHHHH
Confidence 1 2222333666789999999999998864 22222 3455667777644 245666666666664 3455444
Q ss_pred HHHH
Q 040136 664 YILV 667 (681)
Q Consensus 664 ~~ll 667 (681)
..|+
T Consensus 272 ~~l~ 275 (282)
T PF14938_consen 272 KMLL 275 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0016 Score=62.12 Aligned_cols=286 Identities=16% Similarity=0.108 Sum_probs=156.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHH--H--CCCC-CCcccHHHHHH
Q 040136 263 HALSKSNRVSEALMLLEEMILMGCTSDVQT----FNDVIHGLCKVNRIHEAAKLVDRML--V--RGFT-PDDITYGVLMH 333 (681)
Q Consensus 263 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~ 333 (681)
.-+|+.|+....+.+|+..++.| .-|..| |..|..+|.-.+++++|+++...=+ . .|-+ -.......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 34788899999999999988877 334433 5555666777778888887764211 1 1111 12233344555
Q ss_pred HHHhcCCHHHHHHHHhhcCC---------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040136 334 GLCRTGRVDEARALLNKIPS---------ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCK 404 (681)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 404 (681)
.+--.|.+++|.....+-.. .....+-.+...|...|+.-.... -.+.|-.++..+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~-----pee~g~f~~ev~---------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA-----PEEKGAFNAEVT---------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC-----hhhcccccHHHH----------
Confidence 55566677776654433222 111223333333433333211100 000011111110
Q ss_pred cCChhHHHHHHHHHHh----cCCC-cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhc
Q 040136 405 QRRFGSALELVNAMAV----KGCE-PNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLE 479 (681)
Q Consensus 405 ~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 479 (681)
..++.|.++|.+=++ .|-. .--..|..|.+.|.-.|+++.|+...+.=+. -|.+.=++.
T Consensus 169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~------------ia~efGDrA--- 232 (639)
T KOG1130|consen 169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLE------------IAQEFGDRA--- 232 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHH------------HHHHhhhHH---
Confidence 012233333332111 1100 0113455666666667888888765543221 111111111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----
Q 040136 480 GVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLF----RG-CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK----- 549 (681)
Q Consensus 480 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 549 (681)
.....+..+.++++-.|+++.|.+.|+.... .| -........+|.+.|.-..++++|+.++.+-+..
T Consensus 233 ---aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 233 ---AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred ---HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235677788888889999999988876532 22 1234556777888888888899999888765431
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 550 GIKPSSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 550 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
...-...++.+|..+|...|..++|+.+.+.-++
T Consensus 310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 310 DRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1112456778889999999999999888877554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0017 Score=50.17 Aligned_cols=74 Identities=23% Similarity=0.360 Sum_probs=40.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 529 ALCNAGAVDKGLGLFEEMMRKGI-KPSSISCNILINGLCRTR--------KANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
.+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+++.|+..+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33344555555555665555555 555566655555544432 233455566666666666666666666655
Q ss_pred HHh
Q 040136 600 LCK 602 (681)
Q Consensus 600 ~~~ 602 (681)
+.+
T Consensus 114 Llk 116 (120)
T PF08579_consen 114 LLK 116 (120)
T ss_pred HHH
Confidence 543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0012 Score=50.97 Aligned_cols=74 Identities=14% Similarity=0.347 Sum_probs=37.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGC-VPNSVVYQTLIHALSKSN--------RVSEALMLLEEMILMGCTSDVQTFNDVIH 298 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 298 (681)
..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+++.|...+++|+..+|+.++.
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~ 112 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG 112 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 333444555555555555555555 455555555555444422 12334455555555555555555555555
Q ss_pred HHH
Q 040136 299 GLC 301 (681)
Q Consensus 299 ~~~ 301 (681)
.+.
T Consensus 113 ~Ll 115 (120)
T PF08579_consen 113 SLL 115 (120)
T ss_pred HHH
Confidence 443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0024 Score=56.08 Aligned_cols=63 Identities=21% Similarity=0.138 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP--SSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
..+..++..+...|++++|...|++++.....+ ...++..+...+...|++++|++.+++..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555566666666666555432111 123455555555555666666665555554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0078 Score=62.69 Aligned_cols=144 Identities=15% Similarity=0.068 Sum_probs=105.0
Q ss_pred CCCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHH
Q 040136 480 GVTANTVTYNTLIHAFLRR--G---SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG--------AVDKGLGLFEEM 546 (681)
Q Consensus 480 ~~~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~ 546 (681)
..+.+...|...+.+.... + +.+.|..+|++.++.. |-....+..+..++.... +...+.+...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3456888888888775432 2 3778999999999884 556666766655553321 233444444444
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 547 MRK-GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 547 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
... ....+...|..+.-.....|++++|...++++++. .|+...|..+...+...|+.++|.+.++++.. +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 12335577887777777889999999999999995 57888999999999999999999999999998 46766
Q ss_pred HHH
Q 040136 626 VTY 628 (681)
Q Consensus 626 ~~~ 628 (681)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0028 Score=55.74 Aligned_cols=114 Identities=9% Similarity=-0.021 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 536 VDKGLGLFEEMMRK-GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP--DIVTYNSLINGLCKMGCIQEALNL 612 (681)
Q Consensus 536 ~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 612 (681)
+..+...+..+.+. +..-....+..++..+...|++++|+..+++.......+ ...+|..+..++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444555555322 222235667778888889999999999999998753222 235788899999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHH-------hcCChhHHHHHHHHH
Q 040136 613 FDKLQAEGIYPD-AVTYNTLISWHF-------KEGLFDDAFLILHKG 651 (681)
Q Consensus 613 ~~~~~~~~~~p~-~~~~~~l~~~~~-------~~g~~~~A~~~~~~~ 651 (681)
++++.+. .|+ ..++..+...+. ..|++++|...+++.
T Consensus 95 ~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9999985 443 456666666666 778877555555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00021 Score=54.22 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=44.3
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 533 AGAVDKGLGLFEEMMRKGIK-PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALN 611 (681)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 611 (681)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|.+++++ .+.+. .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666777777776665321 1333444466667777777777777766 22111 122333344666667777777777
Q ss_pred HHHH
Q 040136 612 LFDK 615 (681)
Q Consensus 612 ~~~~ 615 (681)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.024 Score=48.16 Aligned_cols=102 Identities=13% Similarity=-0.035 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
|+..--..+...+...|+..+|...|++...--...+..+...+.++....+++..|...++++-+...--.++...-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 34444444555555555555555555555443333344444455555555555555555555544111001111222333
Q ss_pred HHHHHhcCCcCcHHHHHHHHHH
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLS 213 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~ 213 (681)
.+.|...|.+.+|..-|+..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4444444444444444444444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00019 Score=42.19 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 258 YQTLIHALSKSNRVSEALMLLEEMILM 284 (681)
Q Consensus 258 ~~~li~~~~~~~~~~~A~~~~~~m~~~ 284 (681)
|+.++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0083 Score=52.92 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPD--IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTL 631 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 631 (681)
...+..+...+...|++++|...+++.++....+. ...+..+..++.+.|++++|+..++++.+. .| +...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 45677888889999999999999999987532222 467888899999999999999999999985 45 45566777
Q ss_pred HHHHHhcCC--------------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 040136 632 ISWHFKEGL--------------FDDAFLILHKGVANGFVPNDATWYILVRNLVKEIN 675 (681)
Q Consensus 632 ~~~~~~~g~--------------~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 675 (681)
..++...|+ +++|.++++++.+ ..|+. +..++.-+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCchh--HHHHHHHHHhcCc
Confidence 778877776 4667777777765 34544 4455555555554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00019 Score=42.18 Aligned_cols=26 Identities=58% Similarity=1.090 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 593 YNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33334444444444444444433333
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00069 Score=48.88 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=40.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILV 667 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 667 (681)
.+.|++++|+++|+++.+.. +-+...+..++.+|.+.|++++|.++++++.. ..|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHH
Confidence 35677777777777777642 22556666677777777777777777777776 346655554443
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.012 Score=47.40 Aligned_cols=89 Identities=21% Similarity=0.231 Sum_probs=41.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 040136 562 INGLCRTRKANTALEFLRDMIHRGLTPD--IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD----AVTYNTLISWH 635 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~ 635 (681)
..++-..|+.++|+.+|++.+..|.... ...+-.+...+...|++++|..++++.... .|+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3444445555555555555555443332 123334444555555555555555555543 222 11112223344
Q ss_pred HhcCChhHHHHHHHHHH
Q 040136 636 FKEGLFDDAFLILHKGV 652 (681)
Q Consensus 636 ~~~g~~~~A~~~~~~~~ 652 (681)
...|+.++|.+.+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55555555555554443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0031 Score=55.33 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=25.2
Q ss_pred hCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHh
Q 040136 161 RGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVA 197 (681)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 197 (681)
+.|..+-....+..|. ++|+..|..+|+.|++++=+
T Consensus 64 RRGHVeFI~aAL~~M~-efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMD-EFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred CcChHHHHHHHHHHHH-HcCCcccHHHHHHHHHhCCC
Confidence 4466666666677777 77778888888877776643
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0011 Score=47.34 Aligned_cols=55 Identities=18% Similarity=0.369 Sum_probs=31.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 597 INGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
...+.+.|++++|+..|+++++. .| +...+..+..++...|++++|...++++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666666654 23 344555566666666666666666666655
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0013 Score=47.67 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 040136 589 DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLISWHFKEG-LFDDAFLILHKGVA 653 (681)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 653 (681)
+..+|..+...+...|++++|+..|++.++. .| +...|..+..+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455666666666666666666666666664 33 3445666666666666 56666666666654
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.006 Score=53.60 Aligned_cols=87 Identities=21% Similarity=0.238 Sum_probs=54.7
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----------------cCChhHHHHH
Q 040136 219 TVYTFGVVMKALCM-----VNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSK----------------SNRVSEALML 277 (681)
Q Consensus 219 ~~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~~~~~~A~~~ 277 (681)
|-.+|..++..|.+ .|.++-....+..|.+.|+..|..+|+.|++++=+ -.+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44555555555542 24455555555666666666666666666655433 1234567788
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 278 LEEMILMGCTSDVQTFNDVIHGLCKVNR 305 (681)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (681)
+++|...|+-||..++..++..+++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888766654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.019 Score=53.39 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG---CIQEALNLFDKLQAEGIYPDAVTYNT 630 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~ 630 (681)
|...|..|...|...|+...|..-|.+..+. -.++...+..+..++..+. +..++.++|++++... +-|......
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 4555555555555555555555555555543 1223444444444443222 2345555555555531 223344444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 040136 631 LISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
|...+...|++.+|...|+.|++
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555666666666665555
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.15 Score=47.62 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=31.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhc
Q 040136 363 INGYVISGRFDEAKAIFYDSMLSVGCIPDVFTF---NILIHGLCKQRRFGSALELVNAMAVK 421 (681)
Q Consensus 363 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~---~~ll~~~~~~~~~~~A~~~~~~~~~~ 421 (681)
...+...|++++|.+ .++.+......+ .... -.++.++.+.++++.|...+++..+.
T Consensus 39 A~~~~~~g~y~~Ai~-~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAIT-QLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHH-HHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334455566666666 555555432221 1221 33455667777777777777777665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.027 Score=45.45 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=48.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---H-HHHHHHHHHH
Q 040136 527 IKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDMIHRGLTPD---I-VTYNSLINGL 600 (681)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~-~~~~~l~~~~ 600 (681)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.++++.... .|+ . .....+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3445556666666666666666554433 234445556666666666666666666553 122 1 1111222345
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~ 618 (681)
...|+.++|+..+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 566666666666655443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.026 Score=50.84 Aligned_cols=137 Identities=15% Similarity=0.057 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHH
Q 040136 116 VYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVL 195 (681)
Q Consensus 116 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~ 195 (681)
+...+++.+.-.|.+.....++.++++.+++.++.....|++.-.+.|+.+.|...|+++.+..+ ..+....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V--- 254 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMV--- 254 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHH---
Confidence 34455566666667777777777777666556666666666666666776666666665552211 11111111111
Q ss_pred HhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 040136 196 VAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEAL 275 (681)
Q Consensus 196 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 275 (681)
.......+.-.+++.+|...+.++...+ +.|+..-|.-.-+..-.|+..+|+
T Consensus 255 ---------------------------~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 255 ---------------------------LMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred ---------------------------HhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHH
Confidence 1111122334455555555565555544 334444444444444456666666
Q ss_pred HHHHHHHHC
Q 040136 276 MLLEEMILM 284 (681)
Q Consensus 276 ~~~~~m~~~ 284 (681)
+.++.|.+.
T Consensus 307 K~~e~~~~~ 315 (366)
T KOG2796|consen 307 KQLEAMVQQ 315 (366)
T ss_pred HHHHHHhcc
Confidence 666666654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.52 Score=49.45 Aligned_cols=111 Identities=13% Similarity=0.148 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
..+.+--+.-+...|+-.+|.++-.+.. -||-..|-.-+.+++..+++++-+++-+... .+.-|.-+..+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence 3344555566677888888887665553 4688888888889999999998777666543 24457778889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILH 649 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 649 (681)
|.+.|+.++|.+++-+.-. .. -...+|.+.|++.+|.+..-
T Consensus 754 c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 9999999999988876532 11 56778888898888876543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0029 Score=45.08 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=36.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+...+...|++++|.+.|+++++.. +-+...+..+..++...|++++|...|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666677777777777776652 22455666666677777777777777777665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.054 Score=49.18 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 488 YNTLIHAFLRRGSLHEAHKLVNDMLFRG--CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
+-.....+...|++++|.+.|+.+.... .+.-....-.++.++.+.|+++.|...+++.++.-
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344555778899999999999998762 12234556677888999999999999999988863
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0026 Score=45.86 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=31.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 567 RTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAV 626 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 626 (681)
..|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|.++++++... .|+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHH
Confidence 4566666666666665541 224455555666666666666666666666653 44433
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.24 Score=48.55 Aligned_cols=169 Identities=16% Similarity=0.095 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG---CPLDEITYNGLIKALCN---AGAVDKGLGLFEEMMRKGIKPSSIS 557 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~ 557 (681)
+..+...++-+|....+++..+++++.+...- +.....+--...-++.+ .|+.++|++++..++...-.++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 33444566667999999999999999988751 12233333344556667 8999999999999777666788899
Q ss_pred HHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH----HHHHHCC
Q 040136 558 CNILINGLCRT---------RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI----QEALNLF----DKLQAEG 620 (681)
Q Consensus 558 ~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~----~~~~~~~ 620 (681)
|..+++.|... ...++|+..|.+.-+. .||...=-.++-.+...|.. .+..++- ..+.++|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 98888877532 2477888888887764 35543222222223333322 1222222 2222333
Q ss_pred C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 621 I---YPDAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 621 ~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
. ..+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 234456677889999999999999999999974
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.12 Score=46.80 Aligned_cols=170 Identities=17% Similarity=0.119 Sum_probs=86.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040136 434 VDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLF 513 (681)
Q Consensus 434 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (681)
...+...|++.+|...|+.+....+.. +--......++.++.+.|+++.|...++.+++
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s---------------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNS---------------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTS---------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCC---------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334555666777666666666542211 11223444566677777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 514 RGCPLDEITYNGLIKALCNA-------------GAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRD 580 (681)
Q Consensus 514 ~~~~~~~~~~~~l~~~~~~~-------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (681)
.........+...+.+.+.. +...+|... +..++.-|-...-..+|.+.+..
T Consensus 71 ~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~ 135 (203)
T PF13525_consen 71 LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAE 135 (203)
T ss_dssp H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHH
T ss_pred HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHH
Confidence 52111111222222222111 111223333 33444444445555555555554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHH
Q 040136 581 MIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD----AVTYNTLISWHFKEGLFDDAF 645 (681)
Q Consensus 581 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 645 (681)
+.+. .-. .--.+...|.+.|.+..|..-++.+++. -|+ ......++.+|.+.|..+.|.
T Consensus 136 l~~~---la~-~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 136 LRNR---LAE-HELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHH---HHH-HHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHH---HHH-HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4431 011 1123566788888888888888888886 444 234566777888888877443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0041 Score=44.90 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG-CIQEALNLFDKLQA 618 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 618 (681)
...|..+...+...|++++|+..|++.++.+ +-+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555566666666666666666665542 223455555555666666 46666666665554
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.029 Score=52.74 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=44.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDI----VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD----AVTYNTLISWHFK 637 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~ 637 (681)
.+.|++++|...|+.+++. .|+. ..+-.+..+|...|++++|...|+.+++. .|+ ...+..++.++..
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHH
Confidence 4445566666666665553 2221 34445555666666666666666666553 222 2333344445555
Q ss_pred cCChhHHHHHHHHHHH
Q 040136 638 EGLFDDAFLILHKGVA 653 (681)
Q Consensus 638 ~g~~~~A~~~~~~~~~ 653 (681)
.|++++|..+++++++
T Consensus 230 ~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 230 KGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666665
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.48 Score=46.08 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 040136 328 YGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRR 407 (681)
Q Consensus 328 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 407 (681)
.+..+.-+...|+...|.++-.+..-++...|...+.+++..+++++..+ +... .-++.-|..++.+|.+.|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~-fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEK-FAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHH-HHhC------CCCCCChHHHHHHHHHCCC
Confidence 33444445555666666666666655666666666666666666665555 3211 1123455566666666666
Q ss_pred hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHH
Q 040136 408 FGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANII 449 (681)
Q Consensus 408 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 449 (681)
..+|..+...+ .+..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 66666555441 123445555566666555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.13 Score=52.46 Aligned_cols=280 Identities=16% Similarity=0.139 Sum_probs=133.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCC
Q 040136 255 SVVYQTLIHALSKSNRVSEALMLL---------EEMILMGCTSDVQTFNDVIHGLCKVNRIH--EAAKLVDRMLVRGFTP 323 (681)
Q Consensus 255 ~~~~~~li~~~~~~~~~~~A~~~~---------~~m~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~ 323 (681)
...+.+-+..|...|.+++|.++- +.+... ..+...++..=.+|.+..+.. +.+.-++++.+.|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 334444455667777777776531 111111 112333444455666555433 3444456677777777
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040136 324 DDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLC 403 (681)
Q Consensus 324 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 403 (681)
+... +...++-.|++.+|-++|.+ +|....|++ +|..|.- --...-+.
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlE-myTDlRM----------FD~aQE~~ 681 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALE-MYTDLRM----------FDYAQEFL 681 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHH-HHHHHHH----------HHHHHHHh
Confidence 7653 44566778888888887765 455555555 4333321 11222333
Q ss_pred hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCC
Q 040136 404 KQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTA 483 (681)
Q Consensus 404 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 483 (681)
..|.-++-..+.++-.+. ..++.-=.+....+...|+.++|..+..+ .+-.+-+.++-+++.. .
T Consensus 682 ~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d----------~gW~d~lidI~rkld~----~ 745 (1081)
T KOG1538|consen 682 GSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGD----------HGWVDMLIDIARKLDK----A 745 (1081)
T ss_pred hcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhc----------ccHHHHHHHHHhhcch----h
Confidence 444444333333322211 00111112233344455666665544321 0112222222222211 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
+..+...+...+.+...+.-|.++|..|-.. ..++......+++++|..+-+...+. .|+ .|.-...
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHH
Confidence 3334444444444555566666666655322 24455555666666666655554432 222 2223333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
-++...++++|.+ +|.+.|+-.+|..+++++...
T Consensus 813 wLAE~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 813 WLAENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HhhhhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhhh
Confidence 3444444444443 555677778888888777654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0074 Score=44.17 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=38.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 040136 598 NGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATW 663 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 663 (681)
..|.+.+++++|+++++.+++.+ +.+...+.....++.+.|++++|.+.+++.++ ..|+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHH
Confidence 34566666777777777666642 22344556666666677777777777777666 33554443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.035 Score=52.23 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDMIHRG--LTPDIVTYNSLI 597 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~ 597 (681)
.|...+..+.+.|++++|...|+.+++..+... ...+..++..|...|++++|...|+.+.+.- -+.....+-.++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777777777777776532211 2455666777777777777777777776531 011133444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 598 NGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
.++...|+.++|..+++++++. .|+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 5666777777777777777764 4543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.64 Score=44.85 Aligned_cols=223 Identities=16% Similarity=0.093 Sum_probs=137.1
Q ss_pred HhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCC
Q 040136 403 CKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVT 482 (681)
Q Consensus 403 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 482 (681)
.+.|+.+.|...-+..-..- +.-.-.+...+...|..|+++.|+++++.-+...+..
T Consensus 165 qr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie---------------------- 221 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE---------------------- 221 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc----------------------
Confidence 35667777766666655441 1223456677777778888888887777655432211
Q ss_pred CCHH--HHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 483 ANTV--TYNTLIHAF---LRRGSLHEAHKLVNDMLFRGCPLDEIT-YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 483 ~~~~--~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
++.. .-..|+.+- .-..+...|...-.+..+. .||... -..-..++.+.|+..++-.+++.+-+....|+
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-- 297 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-- 297 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--
Confidence 1110 011111111 1112355555555555543 444332 22345678899999999999999998754444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHR-GLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
.+.. ..+.+.|+ .++.-+++.... ..+|| ....-.+.++-...|++..|..--+.... ..|....|..|.+.
T Consensus 298 ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdI 371 (531)
T COG3898 298 IALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADI 371 (531)
T ss_pred HHHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHH
Confidence 3322 22334554 444444443321 24454 56667778888899999999988888877 58888899999888
Q ss_pred HHhc-CChhHHHHHHHHHHHCCCCC
Q 040136 635 HFKE-GLFDDAFLILHKGVANGFVP 658 (681)
Q Consensus 635 ~~~~-g~~~~A~~~~~~~~~~g~~~ 658 (681)
-... |+-.++...+.+.++..-.|
T Consensus 372 eeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 372 EEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HhhccCchHHHHHHHHHHhcCCCCC
Confidence 6554 99999999999999854333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.09 Score=44.82 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 594 NSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
..++..+...|++++|..+.+.+.... +-|...|..++.+|...|+..+|.+.|+++.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344444445555555555555555431 2234455555555555555555555554443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.078 Score=45.22 Aligned_cols=71 Identities=32% Similarity=0.490 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMR-----KGIKPSSISC 558 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 558 (681)
....++..+...|++++|..+.+.+.... |.+...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455666667777777777777777663 66777777777777777777777777776643 2666665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.63 E-value=1.1 Score=47.75 Aligned_cols=176 Identities=16% Similarity=0.123 Sum_probs=85.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHH----HHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHH
Q 040136 154 LIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYN----VVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKA 229 (681)
Q Consensus 154 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 229 (681)
.-+..+.+...++.|+.+-..-. .+..... ...+-+.+.|++++|...|-+-+.. +.| ..+++-
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 34455556666666665543322 1222222 2233344566666666666554432 111 223444
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040136 230 LCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEA 309 (681)
Q Consensus 230 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (681)
|....+..+-..+++.+.+.|. .+...-..|+.+|.+.++.++-.+..+.-. .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 4455555555666666666663 334444556666676666666555554433 2211 11133445555555555555
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 040136 310 AKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS 353 (681)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 353 (681)
..+-..... .... +--.+-..+++++|.+.+..++-
T Consensus 483 ~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcCCH
Confidence 555444322 1111 22223345666666666666553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0078 Score=44.74 Aligned_cols=61 Identities=28% Similarity=0.419 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQAE--GIY---PD-AVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
+++.+..+|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555554432 011 11 2344455555555555555555555544
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.28 Score=50.28 Aligned_cols=100 Identities=22% Similarity=0.156 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 040136 289 DVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVI 368 (681)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 368 (681)
+..+...+...+.+...+..|-++|..|-. ...+++.....+++++|..+-++.++--..+|....+.++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 445555555556666677777777776642 23566777778888888888888777434444444555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040136 369 SGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAV 420 (681)
Q Consensus 369 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 420 (681)
..+++||.+ +|.+.|+-.+|..+++++..
T Consensus 817 ~DrFeEAqk-----------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQK-----------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHH-----------------------HHHHhcchHHHHHHHHHhhh
Confidence 555555555 34455666666666666543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.25 Score=41.86 Aligned_cols=87 Identities=10% Similarity=-0.135 Sum_probs=41.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 040136 565 LCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 644 (681)
+...|++++|..+|.-+.-.+. -+..-|..|..++-..+++++|+..|......+ .-|...+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 3345555555555555444321 133334445555555555555555555544432 12333344445555555555555
Q ss_pred HHHHHHHHH
Q 040136 645 FLILHKGVA 653 (681)
Q Consensus 645 ~~~~~~~~~ 653 (681)
+..|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 555555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=1 Score=43.58 Aligned_cols=305 Identities=14% Similarity=0.064 Sum_probs=165.6
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH--HcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhCCChHH
Q 040136 92 LDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKL--GANKEFKVIDSVLLQMKEEGIICRESLFILIMK--YYGRGGVPGQ 167 (681)
Q Consensus 92 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~ 167 (681)
..|..+...|....+..| |..+-..+ .-.||-..|.++-.+..+.- ..+......|+. +-.-.|+++.
T Consensus 67 ~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~ll-ssDqepLIhlLeAQaal~eG~~~~ 138 (531)
T COG3898 67 ESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKLL-SSDQEPLIHLLEAQAALLEGDYED 138 (531)
T ss_pred hCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhhh-hccchHHHHHHHHHHHHhcCchHH
Confidence 456666777766554433 34443333 34677777777766654321 123334444443 3345689999
Q ss_pred HHHHHHHcHhhcCCCCCHHhHHHHHHHH----HhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 040136 168 ATRLLLDMKSVYGCQPTFRSYNVVLDVL----VAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLL 243 (681)
Q Consensus 168 A~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 243 (681)
|.+-|+.|. .|+.+-..-++++ -+.|..+.|.++-++....-.. -......++...|..|+++.|++++
T Consensus 139 Ar~kfeAMl------~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 139 ARKKFEAML------DDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred HHHHHHHHh------cChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHH
Confidence 999999988 2344333333333 2568888888888777665322 2457778888888999999999988
Q ss_pred HHHHhCC-CCCChhh--HHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHH
Q 040136 244 RDMTKHG-CVPNSVV--YQTLIHALSK---SNRVSEALMLLEEMILMGCTSDVQTFN-DVIHGLCKVNRIHEAAKLVDRM 316 (681)
Q Consensus 244 ~~~~~~~-~~~~~~~--~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~ 316 (681)
+.-.... +.+++.- -..|+.+-.. .-+...|.+.-.+..+ +.||...-. .-..++.+.|+..++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 8766543 2233321 1222222111 2234455554444443 345543322 3346778888888888888888
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCCHHHHH----HHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH
Q 040136 317 LVRGFTPDDITYGVLMHGLCRTGRVDEAR----ALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDV 392 (681)
Q Consensus 317 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 392 (681)
-+....|+.. .+..+.+.|+..... +-++.|+..+..+...+..+-...|++..|.. --+... ...|..
T Consensus 290 WK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa-~Aeaa~--r~~pre 362 (531)
T COG3898 290 WKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA-KAEAAA--REAPRE 362 (531)
T ss_pred HhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH-HHHHHh--hhCchh
Confidence 8775555532 222344555422111 12334444555555555555555666655554 222222 223444
Q ss_pred HHHHHHHHHHHh-cCChhHHHHHHHHHHh
Q 040136 393 FTFNILIHGLCK-QRRFGSALELVNAMAV 420 (681)
Q Consensus 393 ~~~~~ll~~~~~-~~~~~~A~~~~~~~~~ 420 (681)
..|..|...-.. .|+-.++..++.+...
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 444444443322 3555555555555544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.40 E-value=1.1 Score=43.75 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCC
Q 040136 292 TFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGR 371 (681)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (681)
+.+..|.-+...|+...|.++..+.. .|+...|...+.+++..++|++-..+... ..++..|-..+..+.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Confidence 34444555556666666666544432 24666666666666666666666554432 3455666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040136 372 FDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELV 415 (681)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~ 415 (681)
..+|.. +... ++ +..-+..|.+.|++.+|.+.-
T Consensus 253 ~~eA~~-yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASK-YIPK-----IP-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHH-HHHh-----CC-----hHHHHHHHHHCCCHHHHHHHH
Confidence 666666 3322 11 133455666666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.011 Score=44.03 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHR----GL-TPD-IVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.+|+.+...|...|++++|++.+++.++. |- .|+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555666666666666666666655532 10 111 34556666666677777777776666553
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.36 Score=40.92 Aligned_cols=88 Identities=15% Similarity=0.024 Sum_probs=57.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 494 AFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANT 573 (681)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 573 (681)
-+...|++++|..+|.-+...+ +-+..-+..|..++-..+++++|+..|..+...+. -|+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3456777777777777766653 44555666677777777777777777776665432 244444455667777777777
Q ss_pred HHHHHHHHHH
Q 040136 574 ALEFLRDMIH 583 (681)
Q Consensus 574 A~~~~~~~~~ 583 (681)
|.+.|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777777665
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.9 Score=45.56 Aligned_cols=339 Identities=13% Similarity=0.072 Sum_probs=186.1
Q ss_pred hcCCCCHHH--------HHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH---c
Q 040136 75 SLHKITPFQ--------LCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKE---E 143 (681)
Q Consensus 75 ~~~~~~~~~--------~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~ 143 (681)
-+.++|.++ +...+...+.+..|.++-.|+.. +......+|...+....+..+... ..+++.+.+ .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~--p~~~~~~Vl~~Wa~~kI~~~d~~d-~~vld~I~~kls~ 502 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNL--PESQGDRVLLEWARRKIKQSDKMD-EEVLDKIDEKLSA 502 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCC--ccccccHHHHHHHHHHHhccCccc-hHHHHHHHHHhcc
Confidence 345666654 33344557899999999999643 222236677777776666543221 223333322 1
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCC----CCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCC
Q 040136 144 GIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQ----PTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPT 219 (681)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~ 219 (681)
-.. .--.|..+.+..-.+|+.+-|..+++.=+ +.+.+ .+...+..-+.-..+.|+.+-...++..+...- +
T Consensus 503 ~~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~-~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~ 577 (829)
T KOG2280|consen 503 KLT-PGISYAAIARRAYQEGRFELARKLLELEP-RSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---N 577 (829)
T ss_pred cCC-CceeHHHHHHHHHhcCcHHHHHHHHhcCC-CccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---H
Confidence 112 22345566666668999999998887544 21111 011123333444445555555555554444321 1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH-HHHH----HCCCCCCHHHHH
Q 040136 220 VYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLL-EEMI----LMGCTSDVQTFN 294 (681)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~-~~m~----~~~~~~~~~~~~ 294 (681)
...|... ..+..-|..++.+..+.. |.. .+-+.|-...+...+-.+. +... ..|..|+. .
T Consensus 578 ~s~l~~~------l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k 642 (829)
T KOG2280|consen 578 RSSLFMT------LRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---K 642 (829)
T ss_pred HHHHHHH------HHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---H
Confidence 1111111 123344555555554421 010 1112222222222221111 1100 11222332 2
Q ss_pred HHHHHHHhcCCH----------HHHHHHHHHHH-HCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHH
Q 040136 295 DVIHGLCKVNRI----------HEAAKLVDRML-VRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVI 363 (681)
Q Consensus 295 ~li~~~~~~~~~----------~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 363 (681)
.....+.+.... .+-+++.+.+. +.|......+.+--+.-+...|+..+|.++-.+.+-+|-..|-.-+
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~ 722 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKL 722 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHH
Confidence 233333333221 11122222222 1233344455666677788899999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCH
Q 040136 364 NGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQL 443 (681)
Q Consensus 364 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 443 (681)
.+++..+++++.++ +-+... .+.-|.-+..+|.+.|+.++|.+.+-+... +.....+|.+.|++
T Consensus 723 ~aLa~~~kweeLek-fAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~ 786 (829)
T KOG2280|consen 723 TALADIKKWEELEK-FAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDV 786 (829)
T ss_pred HHHHhhhhHHHHHH-HHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccH
Confidence 99999999999888 533222 245677788999999999999988855432 12577889999999
Q ss_pred HHHHHHHHH
Q 040136 444 EKANIIINE 452 (681)
Q Consensus 444 ~~A~~~~~~ 452 (681)
.+|.++--+
T Consensus 787 ~eAad~A~~ 795 (829)
T KOG2280|consen 787 KEAADLAAE 795 (829)
T ss_pred HHHHHHHHH
Confidence 998776543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.035 Score=40.53 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=30.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.|.+.+++++|.++++.++..+ +.+...|.....++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555566666666666665541 22344455555555666666666666666665
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.5 Score=43.21 Aligned_cols=147 Identities=12% Similarity=0.174 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 428 VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKL 507 (681)
Q Consensus 428 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (681)
.+|...++...+..-++.|..+|.+..+.++ +.+++.++++++..++ .|+..-|..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~----------------------~~h~vyi~~A~~E~~~-~~d~~ta~~i 454 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGI----------------------VGHHVYIYCAFIEYYA-TGDRATAYNI 454 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCC----------------------CCcceeeeHHHHHHHh-cCCcchHHHH
Confidence 4555566666666666666666666655542 3457777888887554 4777788888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 508 VNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
|+--... .+.+..--+..+.-+...++-..|..+|+..+.. +..+ ...|..++..-..-|+...+..+-++|.+.
T Consensus 455 felGl~~-f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~- 531 (660)
T COG5107 455 FELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL- 531 (660)
T ss_pred HHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH-
Confidence 8775554 2334444455666677788888888888866553 2222 467778888778888888888887777763
Q ss_pred CCCCHHHHHHHHHHHH
Q 040136 586 LTPDIVTYNSLINGLC 601 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~ 601 (681)
.|-..+...+..-|.
T Consensus 532 -~pQen~~evF~Sry~ 546 (660)
T COG5107 532 -VPQENLIEVFTSRYA 546 (660)
T ss_pred -cCcHhHHHHHHHHHh
Confidence 455444444444443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.061 Score=53.36 Aligned_cols=97 Identities=9% Similarity=-0.024 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI----VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYN 629 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 629 (681)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.++++++.+ .+ .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 5678899999999999999999999999984 5664 358899999999999999999999999852 11 222
Q ss_pred HHHH--HHHhcCChhHHHHHHHHHHHCCC
Q 040136 630 TLIS--WHFKEGLFDDAFLILHKGVANGF 656 (681)
Q Consensus 630 ~l~~--~~~~~g~~~~A~~~~~~~~~~g~ 656 (681)
.+.. .+.......+..++++.+.+.|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11122334566777777777664
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.11 E-value=2.6 Score=47.10 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 040136 287 TSDVQTFNDVIHGLCKVN--RIHEAAKLVDRMLV 318 (681)
Q Consensus 287 ~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~ 318 (681)
.|+ .....+|..+.+.+ ..+.+++...+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 344 33445666777666 56666666665553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.18 Score=48.89 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT-YNTLIS 633 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~ 633 (681)
..++..+..+|.+.+++.+|++.-++.++.+ ++|....-.=.++|...|+++.|+..|+++++ +.|+... -+.++.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 3456778888999999999999999999863 55777777778899999999999999999998 5776554 445555
Q ss_pred HHHhcCChh-HHHHHHHHHHHC
Q 040136 634 WHFKEGLFD-DAFLILHKGVAN 654 (681)
Q Consensus 634 ~~~~~g~~~-~A~~~~~~~~~~ 654 (681)
.--+..+.. ...++|..|...
T Consensus 334 l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 555555544 447788888864
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.15 Score=41.62 Aligned_cols=101 Identities=20% Similarity=0.226 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
|..++..++-++++.|+.+....+.+..- |+..+... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566667777777777776666665433 22211100 0000 0112346688888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC
Q 040136 599 GLCKMGCIQEALNLFDKLQAE-GIYPDAVTYNTLISWHFKEG 639 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g 639 (681)
+|+..|++..|.++.+...+. +++.+..+|..|+......-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 888888888888888888776 66667888888887765443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.12 Score=42.12 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 428 VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKL 507 (681)
Q Consensus 428 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (681)
.++..++.++++.|+.+....+++..-.-++.....+.. --......|+..+..+++.+|+..|++..|.++
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~--------~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~ 74 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD--------YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKL 74 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc--------cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence 445555566666666665555554432211111000000 011234568888888888888888888888888
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHH
Q 040136 508 VNDMLFR-GCPLDEITYNGLIKALC 531 (681)
Q Consensus 508 ~~~~~~~-~~~~~~~~~~~l~~~~~ 531 (681)
++...+. +++.+..+|..|+.-..
T Consensus 75 vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 75 VDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 8887654 56667777877776543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.94 Score=40.80 Aligned_cols=145 Identities=13% Similarity=0.031 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK---G--IKPSSISCNIL 561 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p~~~~~~~l 561 (681)
.|+.....|...|.++-|-..+++.-+. ....++++|+++|++...- + ...-...+...
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 3444555566666666665555544322 2334566677777665442 1 01112344555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C--CCCHHHHHHHHH
Q 040136 562 INGLCRTRKANTALEFLRDMIHR----GLTPDI-VTYNSLINGLCKMGCIQEALNLFDKLQAEG-I--YPDAVTYNTLIS 633 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~--~p~~~~~~~l~~ 633 (681)
.+.+.+..++++|-..+.+-... .-.++. ..|-..|-.+....|+..|...++.--+.+ + .-+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 66677777777766555443221 111222 234444555666678888888888755431 1 223556777777
Q ss_pred HHHhcCChhHHHHHH
Q 040136 634 WHFKEGLFDDAFLIL 648 (681)
Q Consensus 634 ~~~~~g~~~~A~~~~ 648 (681)
+| ..|+.+++..++
T Consensus 237 ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVL 250 (308)
T ss_pred Hh-ccCCHHHHHHHH
Confidence 65 557777665543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.1 Score=41.87 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=30.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 229 ALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMI 282 (681)
Q Consensus 229 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 282 (681)
.....|+..+|..+|....... +-+...--.++++|...|+.+.|..++..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3445666666666666665543 2334445556666666666666666666554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.17 Score=50.41 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 517 PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS----ISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
|.+...++.+..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999964 453 45899999999999999999999999984
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.58 E-value=1 Score=37.99 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNA 533 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 533 (681)
..++..+...+.......+++.+...+ +.+....+.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 344445555555555555555555544 24444555555555543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.8 Score=40.51 Aligned_cols=165 Identities=16% Similarity=0.077 Sum_probs=102.7
Q ss_pred HHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 167 QATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDM 246 (681)
Q Consensus 167 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 246 (681)
...++++++. ++....--.-.......|++.+|...|......... +...-..+..+|...|+.+.|..++..+
T Consensus 121 qlr~~ld~~~-----~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 121 QLRQFLDKVL-----PAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHHhc-----ChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 4445555555 222222223334566788899999999888886433 4566777888899999999999999987
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCc
Q 040136 247 TKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGF-TPDD 325 (681)
Q Consensus 247 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 325 (681)
....-.........-|..+.+.....+...+-++.... +-|...-..+...+...|+.+.|.+.+-.++.... .-|.
T Consensus 195 P~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~ 272 (304)
T COG3118 195 PLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG 272 (304)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc
Confidence 75431122222233455666666666555655555542 33677777788888888999998887777665421 1234
Q ss_pred ccHHHHHHHHHhcC
Q 040136 326 ITYGVLMHGLCRTG 339 (681)
Q Consensus 326 ~~~~~l~~~~~~~g 339 (681)
..-..++..+.--|
T Consensus 273 ~~Rk~lle~f~~~g 286 (304)
T COG3118 273 EARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHHHhcC
Confidence 44445554444433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.3 Score=46.03 Aligned_cols=164 Identities=15% Similarity=0.038 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEI------TYNGLIKALCN----AGAVDKGLGLFEEMMRKGIKPSSI 556 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~ 556 (681)
.+..++....=.|+-+.+++.+.+..+.+---.+. .|..++..++. ....+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 45567777777899999999998877653222222 23333333332 34678899999999886 35544
Q ss_pred HH-HHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 557 SC-NILINGLCRTRKANTALEFLRDMIHRG--L-TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 557 ~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
.| -.-.+.+...|++++|++.+++..... . ......+--+..++.-.++|++|...|..+.+.+ .-+..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 44 334566778899999999999866421 1 1123445567778888999999999999999863 44455565555
Q ss_pred HH-HHhcCCh-------hHHHHHHHHHHH
Q 040136 633 SW-HFKEGLF-------DDAFLILHKGVA 653 (681)
Q Consensus 633 ~~-~~~~g~~-------~~A~~~~~~~~~ 653 (681)
.+ +...|+. ++|.+++++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44 4567777 888888887664
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.36 Score=38.60 Aligned_cols=91 Identities=19% Similarity=0.120 Sum_probs=64.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCC
Q 040136 529 ALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI---VTYNSLINGLCKMGC 605 (681)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~ 605 (681)
+....|+.+.|++.|.+.+..- +.....||.-..++.-+|+.++|++-+++.++..-.-.. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567788888888888888753 236678888888888888888888888888774211121 223333445677888
Q ss_pred HHHHHHHHHHHHHCC
Q 040136 606 IQEALNLFDKLQAEG 620 (681)
Q Consensus 606 ~~~A~~~~~~~~~~~ 620 (681)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888887766
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.36 E-value=6.2 Score=44.31 Aligned_cols=127 Identities=13% Similarity=0.170 Sum_probs=61.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHcHhhcCC--CCCHHhHHHHHHHHHhc-CCcCcHHHHHHHHHHCCCCCChhhHHHH---
Q 040136 153 ILIMKYYGRGGVPGQATRLLLDMKSVYGC--QPTFRSYNVVLDVLVAG-NCHKVAPNLFYDMLSKGISPTVYTFGVV--- 226 (681)
Q Consensus 153 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~~~~~l--- 226 (681)
...++.+.+.+++.+|..+.++-.-...+ ..++..+-.-+.++++. ++.+-...++-.+...++.-+ .|...
T Consensus 681 La~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~--~y~~~~~s 758 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKT--MYSSTSGS 758 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhh--hccccccc
Confidence 34566677788888887777665422221 12233333334455543 344444444444433221111 11111
Q ss_pred -HHHHHhc----CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 040136 227 -MKALCMV----NEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSN--RVSEALMLLEEMIL 283 (681)
Q Consensus 227 -l~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~ 283 (681)
...|... ..++...+.++....+. .|+ .-...+|..|.+.+ ..+.|+....+...
T Consensus 759 ~k~~~~~r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 759 GKQVYMSRDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cceeEEeccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 0111111 22344444444444443 454 44566788888877 67777777766664
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=2.3 Score=39.09 Aligned_cols=171 Identities=23% Similarity=0.305 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRG--CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
..|+.-+ .-.+.|++++|.+.|+.+.... .+-...+...++-++.+.+++++|+...++.+.....-...-|-..+.
T Consensus 36 ~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 3444333 3567899999999999998762 223455666677788899999999999999988733222233333344
Q ss_pred HHHh-------cCCH---HHHHHHHHHHHHC----CCCCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 564 GLCR-------TRKA---NTALEFLRDMIHR----GLTPDIVTY------------NSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 564 ~~~~-------~g~~---~~A~~~~~~~~~~----~~~p~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
+++. ..+. .+|..-|++++.+ ...||...- ..+..-|.+.|.+..|..-++.|+
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4332 1233 3455555555543 223333211 245677889999999999999999
Q ss_pred HCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 618 AEGIYPD----AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 618 ~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
+. .|+ ...+-.+..+|...|..++|.+.-+-+..+ .|+..
T Consensus 195 e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N--~p~s~ 238 (254)
T COG4105 195 EN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN--YPDSQ 238 (254)
T ss_pred hc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc--CCCCc
Confidence 97 333 335566778899999999999987777653 45544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.24 Score=45.68 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHCCC-CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040136 189 NVVLDVLVAGNCHKVAPNLFYDMLSKGI-SP-TVYTFGVVMKALCMVNEVDSACSLLRDMTKH 249 (681)
Q Consensus 189 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 249 (681)
--|..++...|++++|..+|..+.+.-. .| -...+.-|..+..+.|+.++|...|+++.+.
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3344555555555555555555544311 11 1233444444555555666666666655554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.27 Score=45.32 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGL--TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD----AVTYNT 630 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 630 (681)
.|+.-+.. .+.|++..|.+.|...++... .-....+-+|.+++...|++++|..+|..+.+. .|+ ...+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCCCChHHHHH
Confidence 34443333 345556666666666665410 001223445666666666666666666666654 222 345555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 040136 631 LISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
|..+..+.|+.++|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666666666666666666666653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.25 Score=48.03 Aligned_cols=78 Identities=14% Similarity=0.017 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNL 670 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 670 (681)
.++..|..++.+.+++.+|++.-++.++.+ ++|......-..+|...|+++.|+..|+++++ +.|+......=+..|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 456778889999999999999999999974 66777888889999999999999999999998 678876665555554
Q ss_pred H
Q 040136 671 V 671 (681)
Q Consensus 671 ~ 671 (681)
.
T Consensus 335 ~ 335 (397)
T KOG0543|consen 335 K 335 (397)
T ss_pred H
Confidence 4
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.11 E-value=2.6 Score=38.65 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=32.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 491 LIHAFLRRGSLHEAHKLVNDMLFRGCPLDE---ITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
+...|.+.|.+..|..-+++|++. .+-.. ..+-.+..+|...|-.++|...-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445566777777777777777665 23222 2334445566666666666655444433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.6 Score=44.00 Aligned_cols=116 Identities=18% Similarity=0.078 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHH--HHHHHHHHhcCCHHH
Q 040136 498 RGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS--ISC--NILINGLCRTRKANT 573 (681)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~--~~l~~~~~~~g~~~~ 573 (681)
.|+..+|-..++++++. .|.|...++..=.+|...|+.+.-...++++... -.++. .+| ..+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45555555556665554 4556666665556666666666665555555543 11222 122 223334445566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 574 ALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKL 616 (681)
Q Consensus 574 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (681)
|.+.-++..+-+ +.|...-.++...+-..|++.++.+++.+-
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 666666655532 224444445555555666666666665543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.05 E-value=3.4 Score=39.63 Aligned_cols=230 Identities=13% Similarity=0.108 Sum_probs=122.9
Q ss_pred HhcCChhHHHHHHHHHHhcC--CCcCH------hhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCccccHHHHHHHH
Q 040136 403 CKQRRFGSALELVNAMAVKG--CEPNI------VTYTILVDGFCKEG-QLEKANIIINEMLAKGLSLNTGDRIEEALGLY 473 (681)
Q Consensus 403 ~~~~~~~~A~~~~~~~~~~~--~~~~~------~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~ 473 (681)
.+.|+.+.|..++.+..... ..|+. ..|+.-...+ +.+ +++.|...+++..+ ++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~----------------~l 66 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYD----------------IL 66 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHH----------------HH
Confidence 34566666666666655432 12221 1233333333 344 78888777765543 22
Q ss_pred HH-HHhcCCCCC-----HHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040136 474 QD-MLLEGVTAN-----TVTYNTLIHAFLRRGSLH---EAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFE 544 (681)
Q Consensus 474 ~~-~~~~~~~~~-----~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (681)
.. -......++ ..++..++.+|...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+++.+.+.
T Consensus 67 ~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~ 145 (278)
T PF08631_consen 67 EKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILM 145 (278)
T ss_pred HhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHH
Confidence 22 110111222 245677888888877654 566666666544 33345555556677777899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HHH-HHHH---HHHhcCC------HHHHH
Q 040136 545 EMMRKGIKPSSISCNILINGL---CRTRKANTALEFLRDMIHRGLTPDIV-TYN-SLIN---GLCKMGC------IQEAL 610 (681)
Q Consensus 545 ~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~-~l~~---~~~~~g~------~~~A~ 610 (681)
+|+..- .-....+..++..+ ... ....|...+..++...+.|... ... .++. .....++ .+...
T Consensus 146 ~mi~~~-~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~ 223 (278)
T PF08631_consen 146 RMIRSV-DHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLE 223 (278)
T ss_pred HHHHhc-ccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHH
Confidence 999862 21233344444443 333 3456777777766654555543 111 1111 1122222 34444
Q ss_pred HHHHHHHHC-CCCCCHHHHH---HHH----HHHHhcCChhHHHHHHHHHH
Q 040136 611 NLFDKLQAE-GIYPDAVTYN---TLI----SWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 611 ~~~~~~~~~-~~~p~~~~~~---~l~----~~~~~~g~~~~A~~~~~~~~ 652 (681)
+++....+. +.+.+..+-. +++ ..+.+.+++++|.+.|+-.+
T Consensus 224 ~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 224 ELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 445533332 2233333322 232 34678899999999998655
|
It is also involved in sporulation []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.04 E-value=4 Score=40.34 Aligned_cols=52 Identities=13% Similarity=0.064 Sum_probs=32.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHH
Q 040136 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDML 477 (681)
Q Consensus 426 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 477 (681)
+--.+..++.++.-.|++++|.+..+.|.+.....+..+..-+-+.++.+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~Li~~~~ 355 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIKLIRHFR 355 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHh
Confidence 4445567777888888888888888888876544333333333444444433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.35 Score=38.65 Aligned_cols=92 Identities=17% Similarity=0.046 Sum_probs=73.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 040136 563 NGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD---AVTYNTLISWHFKEG 639 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g 639 (681)
-++...|+.+.|++.|.+.+.. .+-....||.-.+++.-.|+.++|+.=+++.++..-.-. ...|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3567889999999999999985 445778999999999999999999999999998621112 223444556688899
Q ss_pred ChhHHHHHHHHHHHCC
Q 040136 640 LFDDAFLILHKGVANG 655 (681)
Q Consensus 640 ~~~~A~~~~~~~~~~g 655 (681)
+-+.|..-|+.+.+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 9999999999888866
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.79 Score=47.61 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=73.2
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhCCCCCCCHH-----HHHHHHHH-HHc---CCCchHHHHHHHHHHHcCCCCCHHHHH-
Q 040136 84 LCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFD-----VYYVLIDK-LGA---NKEFKVIDSVLLQMKEEGIICRESLFI- 153 (681)
Q Consensus 84 ~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~-----~~~~l~~~-~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~- 153 (681)
+..++-..||-+..++.+..+.+..++....- .|+.++.. +.- ..+.+.|.+++..+.+.-+ +...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP--~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP--NSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC--CcHHHHH
Confidence 34444568888888888888766555443322 23333322 222 4566678888888877653 333333
Q ss_pred HHHHHHHhCCChHHHHHHHHHcHhhcCC--CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHC
Q 040136 154 LIMKYYGRGGVPGQATRLLLDMKSVYGC--QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSK 214 (681)
Q Consensus 154 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 214 (681)
.-.+.+...|++++|++.|++......- +.....+--+.-.+.-.+++++|...|.++.+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 4566677778888888888765411000 111122333344455566666666666666664
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.9 Score=36.27 Aligned_cols=128 Identities=13% Similarity=0.184 Sum_probs=91.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 523 YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK 602 (681)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 602 (681)
...++..+...+.......+++.+...+. .+....+.++..|++.+ ..+.+++++. ..+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34567777778889999999999998864 57788899999998764 4455555552 1234445567888889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 603 MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKE-GLFDDAFLILHKGVANGFVPNDATWYILVRNLVKE 673 (681)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 673 (681)
.+-++++.-++.++.. +...+..+... ++.+.|.+++++- .+...|..++..+...
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~~ 138 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLDK 138 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHcc
Confidence 9999999999988743 22334444444 8889999988763 2677888888877643
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.80 E-value=2.2 Score=40.93 Aligned_cols=57 Identities=14% Similarity=0.005 Sum_probs=26.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040136 491 LIHAFLRRGSLHEAHKLVNDMLFRGC-----PLDEITYNGLIKALCNAGAVDKGLGLFEEMM 547 (681)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (681)
+..++...+.++++++.|+...+.-. -....++..|...|.+..|+++|.-+...+.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 44444445555555555555433210 0122345555555555555555555544443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=3.4 Score=41.63 Aligned_cols=110 Identities=12% Similarity=0.030 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRD 580 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (681)
..+|.++.+...+.+ +.|+.....+..+....++++.|..+|+++...++. ...+|........-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445566666666664 556666666666666666677777777777664321 334555555555666777777777776
Q ss_pred HHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 581 MIHRGLTPDI---VTYNSLINGLCKMGCIQEALNLFDK 615 (681)
Q Consensus 581 ~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (681)
..+. .|.. .+....++.|+. ...++|+.++-+
T Consensus 398 alrL--sP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 398 SLQL--EPRRRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred Hhcc--CchhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 5553 3332 222233334443 345556655544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.67 E-value=2.6 Score=38.15 Aligned_cols=206 Identities=15% Similarity=0.137 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 223 FGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCK 302 (681)
Q Consensus 223 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (681)
|.....+|....++++|..-+.+..+.. ..|...|. ..+.++.|.-+++++.+. .--+..|+.....|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 4444455666677777776666655321 11111111 122234444444444432 1122334444555555
Q ss_pred cCCHHHHHHHHHHHHHC--CCCCCc--ccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 040136 303 VNRIHEAAKLVDRMLVR--GFTPDD--ITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAI 378 (681)
Q Consensus 303 ~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 378 (681)
.|..+.|-..+++.-+. ++.|+. ..|.--+......++...|.++ +......+++..++.+|-..
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-----------~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-----------YGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH-----------HHHhhhHhhhhHHhhHHHHH
Confidence 66655555555544321 222321 1122222222223333333333 33344566666666666552
Q ss_pred HHHHHHh---CCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 040136 379 FYDSMLS---VGCIPDV-FTFNILIHGLCKQRRFGSALELVNAMAVKG---CEPNIVTYTILVDGFCKEGQLEKANIII 450 (681)
Q Consensus 379 ~~~~~~~---~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 450 (681)
+.+...- ..-.++. ..|...|-.+.-..++..|.+.++.--+.+ -..+..+...|+.+|- .|+.+++..++
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 3222111 0111121 335555666777788999999988754432 1235567777887774 67777766655
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=3.6 Score=41.39 Aligned_cols=146 Identities=14% Similarity=0.034 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 501 LHEAHKLVNDML---FRGCPLDEITYNGLIKALCN---------AGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT 568 (681)
Q Consensus 501 ~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (681)
.+.|..+|.+.. +.. |.....|..+..++.. ..+..+|.++-+++++.+.. |......+..+....
T Consensus 274 ~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 556777777777 331 2235555555444432 23456788888888887644 788888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHH
Q 040136 569 RKANTALEFLRDMIHRGLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA---VTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A 644 (681)
++.+.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+ +.|.. .+....++.|+.. ..++|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 9999999999999984 565 46666677777889999999999999887 46653 3334445566655 56778
Q ss_pred HHHHHHHHH
Q 040136 645 FLILHKGVA 653 (681)
Q Consensus 645 ~~~~~~~~~ 653 (681)
.+++-+-.+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK11906 427 IKLYYKETE 435 (458)
T ss_pred HHHHhhccc
Confidence 877765443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.48 E-value=7 Score=40.51 Aligned_cols=398 Identities=13% Similarity=0.061 Sum_probs=199.5
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCChHHHHHH
Q 040136 93 DVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYG-RGGVPGQATRL 171 (681)
Q Consensus 93 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~ 171 (681)
+++.+...++..+...| --...|...+..=.+.|..+.+..+|++.+..- +.+...|......+. ..|+.+.....
T Consensus 60 ~~~~~r~~y~~fL~kyP--l~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-p~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYP--LCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-PLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 34455555555554443 223345555666678899999999999987653 356667765544443 45788888889
Q ss_pred HHHcHhhcCCCC-CHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHH---Hhc------CChhHHHH
Q 040136 172 LLDMKSVYGCQP-TFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKAL---CMV------NEVDSACS 241 (681)
Q Consensus 172 ~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~------g~~~~A~~ 241 (681)
|++...-.|..- ....|...|..-..++++.....++++.++. |. ..|+....-| .+. ...+++.+
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQNEEKILLSIDELIQ 212 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcCChhhhcCHHHHHH
Confidence 998885555322 2345777787778888889999999998875 22 2233222222 111 22233333
Q ss_pred HHHHHHhC-C---CCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 242 LLRDMTKH-G---CVPNSVVYQTLIHALSK-SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRM 316 (681)
Q Consensus 242 ~~~~~~~~-~---~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (681)
+-....+. . ..+....+..-+.--.. .+..+++..++.+... ..-..+...-......-.++.-
T Consensus 213 l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~ 281 (577)
T KOG1258|consen 213 LRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEG 281 (577)
T ss_pred HhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhh
Confidence 32222211 0 00011111111111000 1111111111111110 0001111111222222233333
Q ss_pred HHCC---CC----CCcccHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040136 317 LVRG---FT----PDDITYGVLMHGLCRTGRVDEARALLNKIPSA---NVVLLNTVINGYVISGRFDEAKAIFYDSMLSV 386 (681)
Q Consensus 317 ~~~~---~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 386 (681)
.+.. ++ ++..+|..-+..-...|+.+.+.-+|++..-+ -...|-..+......|+.+-|.. +.....+-
T Consensus 282 IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~-~~~~~~~i 360 (577)
T KOG1258|consen 282 IKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANN-VLARACKI 360 (577)
T ss_pred ccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHH-HHHhhhhh
Confidence 3221 12 23346677777777888888888888887663 23456666666666688887776 33333332
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccc
Q 040136 387 GCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIV-TYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDR 465 (681)
Q Consensus 387 ~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 465 (681)
.++-.+.+.-.-....-..|+++.|..+++.+.+.- |+.. .-..-+..-.+.|..+.+.. ..++...-.
T Consensus 361 ~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~------- 430 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANY-KNELYSSIY------- 430 (577)
T ss_pred cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhc-------
Confidence 333222222222222345678999999998888763 4432 22222333445666666552 112111100
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 040136 466 IEEALGLYQDMLLEGVTANTVTYNTLIHA-----FLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG 534 (681)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 534 (681)
.| .-+......+.-- +.-.++.+.|..++.++.+. .+++...|..++......+
T Consensus 431 -------------~~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 431 -------------EG-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred -------------cc-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 00 0122222222211 22356778888888887776 5667777777766554443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.45 E-value=8.7 Score=41.47 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=24.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 040136 596 LINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAF 645 (681)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 645 (681)
++..+.+..+.+.++.+.+..-+. +...|..+++.+.+.+..+.-.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~ 756 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCY 756 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHH
Confidence 344455555566555555544332 4555666666666655444333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.42 E-value=3.5 Score=41.62 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 525 GLIKALCNAGAVDKGLGLFEEMMRKGIK-PSSISCNILINGLCRTRKANTALEFLRDMI 582 (681)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 582 (681)
.+..++-+.|+.++|++.|+++.+.... .+......|+.++...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444555566666666666666553211 122344556666666666666666666543
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.30 E-value=2 Score=43.95 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=49.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040136 495 FLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTA 574 (681)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 574 (681)
..+.|+.+.|.++.++ ..+...|..|.+...+.|+++-|+..|.+... +..|+-.|.-.|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 4455666666655432 22555666666666666666666666655432 23444445556665555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 575 LEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFD 614 (681)
Q Consensus 575 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (681)
.++.+.....| -++....++...|+.++..+++.
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555544432 13333344444555555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.02 E-value=2.7 Score=43.07 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=13.0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHhhc
Q 040136 325 DITYGVLMHGLCRTGRVDEARALLNKI 351 (681)
Q Consensus 325 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 351 (681)
...|..|.+...+.|+++-|++.|.+.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 334445555555555555555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.96 E-value=3.5 Score=35.13 Aligned_cols=136 Identities=12% Similarity=0.088 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHH--HHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEI-TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSI-SCN--ILI 562 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~--~l~ 562 (681)
.|...+. +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-.. -.. --.
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3433333 456777888888888887776543222 22223344566788888888888877654333322 111 112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 563 NGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP 623 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 623 (681)
..+...|.+++.....+.+...+-+.-...-..|.-+-.+.|++.+|...|..+......|
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 2345667777776666665544333333344556666667777777777777776653344
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.96 E-value=2.8 Score=33.92 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK 552 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 552 (681)
.......+......|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 334455566667777777777777777653 3567777777777888888888888888877777653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.75 Score=42.31 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=34.3
Q ss_pred hHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcC----------------CcCcHHHHHHHHHHCCCCCChhhHHHHHH
Q 040136 165 PGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGN----------------CHKVAPNLFYDMLSKGISPTVYTFGVVMK 228 (681)
Q Consensus 165 ~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 228 (681)
++--...+..|. ++|+..|..+|+.||.++-+.. +.+=++.++++|...|+.||..+-..|++
T Consensus 88 veFIy~ALk~m~-eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 88 VEFIYTALKYMK-EYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred HHHHHHHHHHHH-HhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 333334445555 6666677777766666543322 11224444455555555555555555555
Q ss_pred HHHhcC
Q 040136 229 ALCMVN 234 (681)
Q Consensus 229 ~~~~~g 234 (681)
++.+.+
T Consensus 167 ~FGr~~ 172 (406)
T KOG3941|consen 167 AFGRWN 172 (406)
T ss_pred Hhcccc
Confidence 544443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.75 E-value=3.2 Score=41.95 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=28.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLT-PDIVTYNSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
+..++.+.|+.++|++.+++|.+.... -+..+...|+.++...+.+.++..++.+--
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444445555555555555555543111 112334455555555555555555555543
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.72 E-value=6.9 Score=37.71 Aligned_cols=174 Identities=12% Similarity=0.055 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----cCHh
Q 040136 358 LLNTVINGYVISGRFDEAKAIFYDSML-SVGCIPD---VFTFNILIHGLCKQRRFGSALELVNAMAVKGCE-----PNIV 428 (681)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~ 428 (681)
.|..+.+++.+..++.+++. +-+.-. -.|..|. ......+..++...+.++++++.|+........ ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~-y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTIS-YCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHH-HHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 45556666666666666666 433322 2232221 123344667777788899999998887653211 1245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 429 TYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVT--ANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 429 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
++-.|...|.+..++++|.-+.....+. .+...-.++. -.....-.|.-++...|+...|.+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~l----------------v~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e 227 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAEL----------------VNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAME 227 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHH----------------HHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 7888999999999999998776654432 1111100000 011122334556777888777777
Q ss_pred HHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 507 LVNDMLF----RGCPL-DEITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 507 ~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
.-++..+ .|-.+ .......+.+.|...|+.+.|+.-|+++..
T Consensus 228 ~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 228 CCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 7666543 34222 334556678889999999999988887654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.70 E-value=4 Score=34.84 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 113 TFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESL-FILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
+...|...+. +.+.+..++|..-|.++.+.|...-+.. .....-.....|+...|...|+++- .....|.+.--..-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia-~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA-ADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh-ccCCCcchhhHHHH
Confidence 3344444443 3455666777777777777665333322 2233444556677777777777776 22222322211111
Q ss_pred H---HHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040136 192 L---DVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKH 249 (681)
Q Consensus 192 l---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 249 (681)
+ -.++.+|.+++.....+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1 234567777777777776665543333444555666666778888888888777654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.64 E-value=4.2 Score=34.98 Aligned_cols=100 Identities=21% Similarity=0.278 Sum_probs=46.5
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 241 SLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRG 320 (681)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 320 (681)
+.++.+.+.+++|+...+..+++.+.+.|++.. +..+...++-+|.......+-.+.. ....+.++--.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 334444555666666666666666666666433 3334444445555444443322222 222233333333221
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHhh
Q 040136 321 FTPDDITYGVLMHGLCRTGRVDEARALLNK 350 (681)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 350 (681)
=...+..+++.+...|++-+|.+...+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 001233445555555555555555444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.48 E-value=2.3 Score=35.23 Aligned_cols=71 Identities=10% Similarity=0.005 Sum_probs=31.5
Q ss_pred HhCCChHHHHHHHHHcHhhcCCCC-CHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040136 160 GRGGVPGQATRLLLDMKSVYGCQP-TFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKAL 230 (681)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 230 (681)
.+.|++++|.+.|+.+..++...+ ....--.++.++.+.+++++|...+++.++....-...-|...+.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 345555555555555543222211 12233344455555555555555555555553222223344444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.48 E-value=6.2 Score=36.33 Aligned_cols=223 Identities=14% Similarity=0.035 Sum_probs=119.8
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCChHHHHH
Q 040136 92 LDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEE-GIICRESLFILIMKYYGRGGVPGQATR 170 (681)
Q Consensus 92 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 170 (681)
+....+...+...............+......+...+++..+...+...... ........+..+...+...+....+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3445555555554433321123455666666677777777777777776652 222345556666666667777777777
Q ss_pred HHHHcHhhcCCCCCHHhHHHHHH-HHHhcCCcCcHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 171 LLLDMKSVYGCQPTFRSYNVVLD-VLVAGNCHKVAPNLFYDMLSKGI--SPTVYTFGVVMKALCMVNEVDSACSLLRDMT 247 (681)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 247 (681)
.+.... .....+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 117 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKAL-ALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHH-cCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 777766 221111 122222222 56677777777777777654221 0122233333333455666777777766666
Q ss_pred hCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 248 KHGCVP-NSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSD-VQTFNDVIHGLCKVNRIHEAAKLVDRMLVR 319 (681)
Q Consensus 248 ~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (681)
... +. ....+..+...+...++.+.+...+....... |+ ...+..+...+...+..+.+...+......
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 553 22 24555566666666666666666666666542 22 233333333333445566666665555543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.84 Score=41.99 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 518 LDEITYNGLIKALCNA-----GAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR 567 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 567 (681)
-|..+|...+..+... +.++-....++.|.+.|++-|..+|+.|++.+-+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 3556666666665432 3455555566677777777777777777776543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.23 E-value=3.5 Score=34.23 Aligned_cols=74 Identities=19% Similarity=0.325 Sum_probs=47.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 492 IHAFLRRGSLHEAHKLVNDMLFRGCPL---DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
.....+.|++++|.+.|+.+... .|. ...+-..|+.+|.+.|++++|...+++.++..+.-...-|-..+.+++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 33456778888888888887766 233 334555677788888888888888888887644333344444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.17 E-value=1 Score=38.05 Aligned_cols=112 Identities=17% Similarity=0.091 Sum_probs=69.7
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 555 SISCNILING---LCRTRKANTALEFLRDMIHRGLTPDIVTYNSL-INGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNT 630 (681)
Q Consensus 555 ~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 630 (681)
..+.+.|+.. -.+.++.+++..++..+.- ..|.......+ ...+...|+|.+|+.+|+.+.+. .|.......
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kA 82 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKA 82 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHH
Confidence 3444444444 4567899999999998887 46655433322 34567889999999999998875 455555566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 631 LISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKE 673 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 673 (681)
|+..|....+=.+=..+-.++++.+ +|..+. .+++.+...
T Consensus 83 LlA~CL~~~~D~~Wr~~A~evle~~--~d~~a~-~Lv~~Ll~~ 122 (160)
T PF09613_consen 83 LLALCLYALGDPSWRRYADEVLESG--ADPDAR-ALVRALLAR 122 (160)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhcC--CChHHH-HHHHHHHHh
Confidence 6666665544333444555677655 333332 344444433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.1 Score=42.04 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE-----GIYPDAVTYN 629 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~ 629 (681)
..++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..++.+.+. |+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3445555566666666666666666666542 235555666666666666666666666555542 5555544443
Q ss_pred HH
Q 040136 630 TL 631 (681)
Q Consensus 630 ~l 631 (681)
.+
T Consensus 232 ~y 233 (280)
T COG3629 232 LY 233 (280)
T ss_pred HH
Confidence 33
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.08 E-value=4 Score=33.06 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 040136 589 DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFV 657 (681)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 657 (681)
+....+.-+..+..+|+-+.-.++...+.+.+ .+++...-.+..+|.+.|...++.++++++-++|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33445666778888899888888888887643 778888889999999999999999999999998864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.01 E-value=7.3 Score=35.83 Aligned_cols=223 Identities=21% Similarity=0.155 Sum_probs=138.0
Q ss_pred CChhHHHHHHHHHHhcCCC-cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCC
Q 040136 406 RRFGSALELVNAMAVKGCE-PNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTAN 484 (681)
Q Consensus 406 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 484 (681)
+....+...+......... .....+......+...+.+..+...+...... ......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~ 94 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL----------------------ELLPNL 94 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----------------------hhccch
Confidence 4445555555555444211 12455666666677777777777666655431 001224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIK-ALCNAGAVDKGLGLFEEMMRKGI--KPSSISCNIL 561 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l 561 (681)
...+......+...++...+.+.+.........+ ......... .+...|+++.|...+.++..... ......+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 173 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence 4556666666777777888888888777653222 222222233 67788888888888888755321 1233444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 040136 562 INGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEG 639 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 639 (681)
...+...++.+.|...+.+.... ... ....+..+...+...++++.|...+...... .|+ ...+..+...+...|
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcC
Confidence 44466778888888888888775 222 3566777777788888888888888888874 443 444555555555667
Q ss_pred ChhHHHHHHHHHHHC
Q 040136 640 LFDDAFLILHKGVAN 654 (681)
Q Consensus 640 ~~~~A~~~~~~~~~~ 654 (681)
.++++...+.+..+.
T Consensus 251 ~~~~~~~~~~~~~~~ 265 (291)
T COG0457 251 RYEEALEALEKALEL 265 (291)
T ss_pred CHHHHHHHHHHHHHh
Confidence 788888888888763
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.86 E-value=12 Score=37.98 Aligned_cols=163 Identities=16% Similarity=0.154 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
|.....+++..+...-.+.-+..+-.+|...| .+...|..++.+|... ..+.-..+|+++.+..+. |.+.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33344445555555555555555555555542 2444555555555544 334455555555554332 3333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC---C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTP---D---IVTYNSLINGLCKMGCIQEALNLFDKLQAE-GIYPDAVTYNTLISWHF 636 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p---~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 636 (681)
.|-+ ++.+.+..+|.++..+ +-| + ...|..|... -..+.+....+..++... |..--.+.+..+..-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3332 5555555555555443 111 0 1233333321 123444444444444443 22222334444445555
Q ss_pred hcCChhHHHHHHHHHHHC
Q 040136 637 KEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~ 654 (681)
...+|++|+++++.+++.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 555555555555555543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.68 E-value=9.9 Score=36.51 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=66.9
Q ss_pred CCChHHHHHHHHHhhhCC-CCCCCH-----HHHHHHHHHHHcCC-CchHHHHHHHHHHHc----C----CCCC-----HH
Q 040136 91 PLDVDTSMEIFTWAGSQE-GYCHTF-----DVYYVLIDKLGANK-EFKVIDSVLLQMKEE----G----IICR-----ES 150 (681)
Q Consensus 91 ~~~~~~al~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~----~----~~~~-----~~ 150 (681)
+||.+.|..++..+.... ...|+. ..+..+.......+ +++.|...+++..+. + ..++ ..
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 688899999998876544 222222 22333333444556 777777666654432 1 1111 13
Q ss_pred HHHHHHHHHHhCCChH---HHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHC
Q 040136 151 LFILIMKYYGRGGVPG---QATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSK 214 (681)
Q Consensus 151 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 214 (681)
++..|+.+|...+..+ +|..+++.+..++|-+ +..+-.-+..+.+.++.+.+.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4456666676666544 3444555555343322 333334455555566777777777777765
|
It is also involved in sporulation []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.63 E-value=7.2 Score=37.15 Aligned_cols=117 Identities=10% Similarity=0.053 Sum_probs=65.4
Q ss_pred HhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH----HHHHHHHhcCCh
Q 040136 196 VAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQ----TLIHALSKSNRV 271 (681)
Q Consensus 196 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~ 271 (681)
.-.|++-+|...++++++. .+.|...+.-.=.+|.-.|+.+.-...++++... ..++...|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4456666666666666664 2335555555556666666666666666666543 123332222 223334456666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 272 SEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDR 315 (681)
Q Consensus 272 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (681)
++|.+.-++..+.+ +.|...-.++.+.+...|+..++.+...+
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66666666666544 44555555566666666666666665544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.59 E-value=12 Score=37.37 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTP---DIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
..++..++..+.+.|.++.|...+.++...+... .....-.-+..+...|+.++|+..++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555566666666666655555432111 112222233444455555566555555554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.49 Score=30.16 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040136 488 YNTLIHAFLRRGSLHEAHKLVNDMLFR 514 (681)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (681)
+..+..+|...|++++|.++++++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555555555555555555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.48 Score=30.20 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=9.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 040136 596 LINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+...|...|++++|+++++++++
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333334444444444443333
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.8 Score=40.67 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMR-----KGIKPSSISCNI 560 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 560 (681)
.++..++..+...|+.+.+.+.++++.... |-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456667777777778888888887777763 66777788888888888888888777777665 266666665554
Q ss_pred HHHH
Q 040136 561 LING 564 (681)
Q Consensus 561 l~~~ 564 (681)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.94 E-value=7.1 Score=33.18 Aligned_cols=51 Identities=14% Similarity=-0.096 Sum_probs=24.5
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcH
Q 040136 125 GANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMK 176 (681)
Q Consensus 125 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 176 (681)
.+.++.+.++.++..+.-..+. ....-..-...+...|++.+|+++|+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3455555555555555444321 22222233334445555555555555554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.67 E-value=23 Score=38.50 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=11.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC
Q 040136 530 LCNAGAVDKGLGLFEEMMRKGIKP 553 (681)
Q Consensus 530 ~~~~g~~~~A~~~~~~~~~~~~~p 553 (681)
+...|++++|++.++++ ++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L---~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL---DLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHT---T-S-
T ss_pred HHHcCCHHHHHHHHHhC---CCCC
Confidence 45678888887665554 4555
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.46 Score=28.68 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 627 TYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
+|..|..+|.+.|++++|.+++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777788888877777754
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.51 Score=28.46 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+|..|...|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366778888888888888888888543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.94 E-value=2.3 Score=37.40 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
.+..+..-|++.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555556666666666655555422222 23344555555555565555555555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.89 E-value=3.7 Score=36.11 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI--VTYNSLINGLCKMGCIQEALNLFDKLQAE---GIYPDAVTYNT 630 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~ 630 (681)
..+..++..|++.|+.+.|++.+.++.+....+.. ..+-.++......|++..+.....++... |-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 56788999999999999999999999987555443 45677888899999999999998887765 21222222112
Q ss_pred HHHH--HHhcCChhHHHHHHHHHHH
Q 040136 631 LISW--HFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 631 l~~~--~~~~g~~~~A~~~~~~~~~ 653 (681)
...+ +...|++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 2222 4567899998888776653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.79 E-value=16 Score=35.20 Aligned_cols=132 Identities=14% Similarity=0.193 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCN--AG----AVDKGLGLFEEMMRKGI---KPSSISCNILINGLCRTRK- 570 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~- 570 (681)
+++...+++.+.+.|+.-+..+|-+....... .. ...+|..+|+.|.+... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556778888888888777666554333322 12 35678888888888632 2344455555433 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 571 ---ANTALEFLRDMIHRGLTPDIV--TYNSLINGLCKMGC--IQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 571 ---~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
.+.+..+++.+.+.|+..+.. ....++..+-.... ...+.++++.+.+.|+++....|..++-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 355677777787777765432 23333322221111 45678888888888888777776655543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.72 E-value=13 Score=33.75 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=17.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCC
Q 040136 400 HGLCKQRRFGSALELVNAMAVKGCE 424 (681)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~~~~~~~~ 424 (681)
..-...+++.+|+++|+++....+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3345567888888888888766443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.0075 Score=51.30 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=67.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC 605 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 605 (681)
++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34445555666666667777766554455666677777777776666666666511 11223345556666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 040136 606 IQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEIN 675 (681)
Q Consensus 606 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 675 (681)
+++|.-++.++.... ..+..+...+++++|.+++.+ .++...|..+++.|...++
T Consensus 86 ~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 666666555433210 111112333455555532222 2346677777777666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.65 E-value=5.3 Score=41.25 Aligned_cols=96 Identities=19% Similarity=0.127 Sum_probs=49.2
Q ss_pred HhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040136 336 CRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELV 415 (681)
Q Consensus 336 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~ 415 (681)
.-.|+++.|..++..+++ ...+.++..+.+.|-.++|++ + .+|... -.....+.|+++.|.++.
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~-~---------s~D~d~---rFelal~lgrl~iA~~la 660 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALE-L---------STDPDQ---RFELALKLGRLDIAFDLA 660 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhh-c---------CCChhh---hhhhhhhcCcHHHHHHHH
Confidence 345666666665555442 234445555556666666665 2 122211 122334556666666555
Q ss_pred HHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 416 NAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEM 453 (681)
Q Consensus 416 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 453 (681)
.+.. +..-|..|.++..+.+++..|.+.|...
T Consensus 661 ~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 661 VEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred Hhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4332 3445666666666666666666655443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.66 Score=27.39 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 627 TYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+|..++.+|...|++++|+..++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444455555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.35 E-value=2.2 Score=32.27 Aligned_cols=60 Identities=8% Similarity=0.140 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 572 NTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
-++.+-++.+...++.|++.+..+-+++|.+.+|+..|+++|+....+ +..+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 345555666666667777777777777777777777777777766643 222334454444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.66 Score=27.30 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+..+..++...|++++|++.++++++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.91 E-value=12 Score=32.28 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 040136 258 YQTLIHALSKSNRVSEALMLLEE 280 (681)
Q Consensus 258 ~~~li~~~~~~~~~~~A~~~~~~ 280 (681)
+..+++.+...|++-+|++..+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 34444555555555555555544
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.89 E-value=59 Score=40.21 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=94.1
Q ss_pred HHHHHHHcCCCchHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH-cHhhcCCCCCHHhHHHHHH
Q 040136 119 VLIDKLGANKEFKVIDSVLLQM----KEEGIICRESLFILIMKYYGRGGVPGQATRLLLD-MKSVYGCQPTFRSYNVVLD 193 (681)
Q Consensus 119 ~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~~ll~ 193 (681)
.+..+-.+.+.+..|...+++- ++.. .....+..+...|+..+++|....+... .. .|+.. .-|-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~---~qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY---QQIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH---HHHH
Confidence 4445666788888999988884 2221 1233444555599999999988887763 32 23322 2334
Q ss_pred HHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCChh
Q 040136 194 VLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTL-IHALSKSNRVS 272 (681)
Q Consensus 194 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~ 272 (681)
.....|++..|...|+++.+.+ ++...+++.+++.....|.++.+....+-....- .+....++++ +.+-.+.++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchh
Confidence 4567789999999999999875 2236678877777777787877777665554432 2333333332 34446666766
Q ss_pred HHHHHHH
Q 040136 273 EALMLLE 279 (681)
Q Consensus 273 ~A~~~~~ 279 (681)
.....+.
T Consensus 1536 ~~e~~l~ 1542 (2382)
T KOG0890|consen 1536 LLESYLS 1542 (2382)
T ss_pred hhhhhhh
Confidence 6655544
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.74 E-value=32 Score=36.89 Aligned_cols=120 Identities=15% Similarity=0.099 Sum_probs=67.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 530 LCNAGAVDKGLGLFEEMMRKGIKPSS--ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQ 607 (681)
Q Consensus 530 ~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 607 (681)
+.--|+-++|..+.++|.... .|-. .-.-.+..+|+-+|+-....+++.-.... ...|+.-...+.-++.-..+.+
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChh
Confidence 444566667777777776642 2211 11234556777777776666666655442 3334444444444556666777
Q ss_pred HHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 608 EALNLFDKLQAEGIYPDAVTY--NTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 608 ~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
....+.+-+.+. ..|.+..= -+|.-+|.-.|. .+|..+++.|..
T Consensus 589 ~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 589 QLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 777777666664 34444322 233344444454 678888888764
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.59 E-value=3.5 Score=34.33 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 554 SSISCNILINGL---CRTRKANTALEFLRDMIHRGLTPDI---VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 554 ~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
+....+.|+... ...++.+++..++..|.- +.|+. .++.. ..+...|+|++|+.+|+++.+. .+....
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~--~~~~p~ 79 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDG--WLLIARGNYDEAARILRELLSS--AGAPPY 79 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc--CCCchH
Confidence 344445555443 457889999999988876 45554 34433 3456889999999999999885 333333
Q ss_pred HHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHH
Q 040136 628 YNTLISWHFKE-GLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 628 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
-..|...|.+. |+ .+=..+-.++++.|-.|+..
T Consensus 80 ~kAL~A~CL~al~D-p~Wr~~A~~~le~~~~~~a~ 113 (153)
T TIGR02561 80 GKALLALCLNAKGD-AEWHVHADEVLARDADADAV 113 (153)
T ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCHhHH
Confidence 33444444443 33 22233444555655444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.93 Score=26.74 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+|..+..++...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.06 E-value=6.6 Score=30.17 Aligned_cols=60 Identities=8% Similarity=0.148 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 573 TALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633 (681)
Q Consensus 573 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 633 (681)
+..+-++.+...++.|++.+..+.+.+|.+.+++..|+++|+....+ +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 44555566666677777777777778888888888888887777765 2222225555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.67 E-value=1.1 Score=26.27 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.|..+..++...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666777777777777777666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.59 Score=27.77 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCChhHHH
Q 040136 625 AVTYNTLISWHFKEGLFDDAF 645 (681)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~ 645 (681)
...|..+...|...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 455556666666666665554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.47 E-value=29 Score=34.69 Aligned_cols=65 Identities=17% Similarity=0.058 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEP---NIVTYTILVDGFCKEGQLEKANIIINEMLA 455 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 455 (681)
...++..++..+.+.|.++.|...+..+...+... .+.+...-+...-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666777777777777777777766543111 233334445555666777777777766665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.13 E-value=14 Score=32.52 Aligned_cols=96 Identities=21% Similarity=0.191 Sum_probs=62.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKGIKPS----SISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLINGL 600 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 600 (681)
=.+-+.+.|++++|..-|..++..-.... ...|..-..++.+.+.++.|++-..+.++.+ |+ ......-..+|
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeay 178 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAY 178 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHH
Confidence 35556778888888888888887522111 2345555667777888888888877777742 32 22333334567
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 601 CKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
.+...+++|++=++++.+. .|..
T Consensus 179 ek~ek~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILES--DPSR 201 (271)
T ss_pred HhhhhHHHHHHHHHHHHHh--Ccch
Confidence 7777888888888888874 5543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.03 E-value=3.1 Score=35.87 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHC-----CCCCCH-HHHHHHHHHHHhcC--
Q 040136 536 VDKGLGLFEEMMRKGIKPSSISCNILINGL---CRTRKANTALEFLRDMIHR-----GLTPDI-VTYNSLINGLCKMG-- 604 (681)
Q Consensus 536 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~-----~~~p~~-~~~~~l~~~~~~~g-- 604 (681)
++.|.+.++.....++ .|...++.-..++ .+.....++.+++++.+++ .+.|+. .++..+..+|...+
T Consensus 7 FE~ark~aea~y~~nP-~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 5566666666555432 3555544444444 3445556787888876653 355654 66667777776443
Q ss_pred --C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 040136 605 --C-------IQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGF 656 (681)
Q Consensus 605 --~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 656 (681)
+ +++|...|+++.+ ..|+...|+.-+... ++|-++..++.+++.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 2 4556666666666 488888887766665 346777777777653
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.02 E-value=33 Score=34.96 Aligned_cols=99 Identities=9% Similarity=0.087 Sum_probs=76.0
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHH
Q 040136 552 KPSSISC-NILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC--KMGCIQEALNLFDKLQAE-GIYPDAVT 627 (681)
Q Consensus 552 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~-~~~p~~~~ 627 (681)
.|+..++ +.+++.+.+.|-.++|...+..+... .+|+...|..+++.-. .+.+..-+..+++.|... | -|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4455444 56778888899999999999999886 4667788888776432 333478889999998876 5 67778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
|-..+.--...|+.+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 87777777788999888888888776
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.87 E-value=7.5 Score=36.73 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 515 GCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK---GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIV 591 (681)
Q Consensus 515 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 591 (681)
|.+....+...++..-....+++.++..+-++... -..|+...+ ..++.+ -.-++++++.++..-++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 45555566666666656667788888777776553 111222222 222222 3346678888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
+++.+++.+.+.+++.+|..+.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888776666654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.80 E-value=3 Score=39.66 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=59.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKGIKP-SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG 604 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (681)
-.+-|.+.|.+++|+..|...+.. .| +.+++..-..+|.+..++..|..-.+..+..+ ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 355677888888888888777764 34 77777777778888887777776666665431 111233444444444556
Q ss_pred CHHHHHHHHHHHHHCCCCCC
Q 040136 605 CIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~p~ 624 (681)
...+|.+=.+..++ ++|+
T Consensus 180 ~~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPK 197 (536)
T ss_pred hHHHHHHhHHHHHh--hCcc
Confidence 66666666666666 4666
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.46 E-value=48 Score=36.19 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDML 512 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~ 512 (681)
=+..++...|+.++|...|+.+.
T Consensus 351 W~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 351 WQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Confidence 34555556788888888877764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.42 E-value=20 Score=31.63 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=40.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 529 ALCNAGAVDKGLGLFEEMMRKGIKPS--SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI 606 (681)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 606 (681)
.+..++++++|...++..+.....-+ ..+--.|.+.....|.+++|+..++...+.+. .......-.+.+...|+-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCch
Confidence 44555666666666555554311100 11112234445555555555555555443221 111122234445555555
Q ss_pred HHHHHHHHHHHHC
Q 040136 607 QEALNLFDKLQAE 619 (681)
Q Consensus 607 ~~A~~~~~~~~~~ 619 (681)
++|+.-|++.++.
T Consensus 176 ~~Ar~ay~kAl~~ 188 (207)
T COG2976 176 QEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.39 E-value=45 Score=35.78 Aligned_cols=147 Identities=10% Similarity=-0.050 Sum_probs=78.0
Q ss_pred hHHHHHHHHHcHhhcCCCCCHHhHHHHH----HH-HHhcCCcCcHHHHHHHHHH-------CCCCCChhhHHHHHHHHHh
Q 040136 165 PGQATRLLLDMKSVYGCQPTFRSYNVVL----DV-LVAGNCHKVAPNLFYDMLS-------KGISPTVYTFGVVMKALCM 232 (681)
Q Consensus 165 ~~~A~~~~~~~~~~~~~~~~~~~~~~ll----~~-~~~~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~ 232 (681)
...|..+++... ..| +...-..+. .+ +....+.+.|+..|+...+ .| +......+..+|.+
T Consensus 228 ~~~a~~~~~~~a-~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAA-KLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHH-hhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 346777777666 322 222222222 22 3345677778888877766 44 33345555666655
Q ss_pred cC-----ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcC
Q 040136 233 VN-----EVDSACSLLRDMTKHGCVPNSVVYQTLIHALSK-SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLC--KVN 304 (681)
Q Consensus 233 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~~ 304 (681)
.. +.+.|..++....+.| .|+....-..+..... ..+...|.++|......|. ++...+..+..... -..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCC
Confidence 32 5566888888777776 3333322222221111 2346678888888777762 22222222221111 234
Q ss_pred CHHHHHHHHHHHHHCC
Q 040136 305 RIHEAAKLVDRMLVRG 320 (681)
Q Consensus 305 ~~~~a~~~~~~~~~~~ 320 (681)
+.+.|..++.+..+.|
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 6777777777777776
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.97 E-value=0.86 Score=27.07 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHH
Q 040136 518 LDEITYNGLIKALCNAGAVDKG 539 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~A 539 (681)
-+..+|+.+...|...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.84 E-value=48 Score=35.56 Aligned_cols=77 Identities=12% Similarity=0.016 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCH
Q 040136 500 SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNA----GAVDKGLGLFEEMMRKGIKPSSISCNILINGLC----RTRKA 571 (681)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~ 571 (681)
+.+.+...+......| +......|.+.|..- .+++.|...+......+ ....| .+...+- -.. +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~-nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALF-NLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHh-hhhhHHhcCcCcch-h
Confidence 3455555555555444 444445555544432 24666666666666554 22222 2222221 122 5
Q ss_pred HHHHHHHHHHHHC
Q 040136 572 NTALEFLRDMIHR 584 (681)
Q Consensus 572 ~~A~~~~~~~~~~ 584 (681)
..|.+++++..+.
T Consensus 526 ~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 526 HLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhc
Confidence 6677777776664
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.52 E-value=24 Score=31.65 Aligned_cols=63 Identities=17% Similarity=0.042 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcH
Q 040136 113 TFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMK 176 (681)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 176 (681)
-+.+|+.+.-.+...|+++.|.+.|+...+.++.-+-...+.-+..| --|++.-|.+-|...-
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fY 160 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFY 160 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHH
Confidence 34556666666667777777777777777776543333333333333 4467777766666555
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.45 E-value=24 Score=31.63 Aligned_cols=29 Identities=14% Similarity=-0.008 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040136 393 FTFNILIHGLCKQRRFGSALELVNAMAVK 421 (681)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 421 (681)
.||--+.+.+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35556666677777777777777666543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.35 E-value=0.8 Score=38.76 Aligned_cols=83 Identities=18% Similarity=0.150 Sum_probs=48.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 226 VMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNR 305 (681)
Q Consensus 226 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (681)
++..+.+.+..+.+..+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555666667777777777777655445566667777777777666666666651 111333345555566666
Q ss_pred HHHHHHHHHH
Q 040136 306 IHEAAKLVDR 315 (681)
Q Consensus 306 ~~~a~~~~~~ 315 (681)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6665555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.21 E-value=34 Score=33.11 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCCC---CCcccHHHHHHHHHhcCCHH
Q 040136 272 SEALMLLEEMILMGCTSDVQTFNDVIHGLCK--VN----RIHEAAKLVDRMLVRGFT---PDDITYGVLMHGLCRTGRVD 342 (681)
Q Consensus 272 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 342 (681)
++...+++.|.+.|...+..+|-+....... .. ....|..+++.|.+...- ++...+..++.. ...+.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445666777777766666555543322222 12 245677788888775422 334444444432 334444
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHH
Q 040136 343 EARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVF--TFNILIHGLCKQRR--FGSALELVNAM 418 (681)
Q Consensus 343 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~--~~~A~~~~~~~ 418 (681)
.-.+..+ . +|+.+...|...+.. ..+.++........ ...+..+++.+
T Consensus 157 ~l~~~~E---------------------------~-~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 157 ELAERME---------------------------Q-CYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HHHHHHH---------------------------H-HHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 3333222 2 677777766655432 23333322222111 45788888999
Q ss_pred HhcCCCcCHhhHHHHHHH
Q 040136 419 AVKGCEPNIVTYTILVDG 436 (681)
Q Consensus 419 ~~~~~~~~~~~~~~ll~~ 436 (681)
.+.|++.....|..+.-.
T Consensus 209 ~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 209 KKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHcCCccccccccHHHHH
Confidence 999988877776665543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.58 E-value=6.6 Score=29.83 Aligned_cols=47 Identities=9% Similarity=0.066 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMM 547 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (681)
.-++.+-++.+.....-|++.+..+.+.+|.+.+++..|.++|+.+.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444445554444455555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.25 E-value=3 Score=39.20 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 235 EVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMI 282 (681)
Q Consensus 235 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 282 (681)
++++++.++..=+..|+-||.++++.+|+.+.+.+++.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555544444444
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.08 E-value=53 Score=34.40 Aligned_cols=130 Identities=8% Similarity=0.014 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHH
Q 040136 117 YYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLV 196 (681)
Q Consensus 117 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 196 (681)
+..++.---...+.+.+..++..+...-+ .-...|......-.+.|..+.+.++|++-. .+++.....|...+..+.
T Consensus 48 wt~li~~~~~~~~~~~~r~~y~~fL~kyP-l~~gyW~kfA~~E~klg~~~~s~~Vfergv--~aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 48 WTTLIQENDSIEDVDALREVYDIFLSKYP-LCYGYWKKFADYEYKLGNAENSVKVFERGV--QAIPLSVDLWLSYLAFLK 124 (577)
T ss_pred hHHHHhccCchhHHHHHHHHHHHHHhhCc-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHh
Confidence 33344333333334555566666665442 334456666777778899999999999988 466777777877776655
Q ss_pred -hcCCcCcHHHHHHHHHHC-CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040136 197 -AGNCHKVAPNLFYDMLSK-GIS-PTVYTFGVVMKALCMVNEVDSACSLLRDMTKH 249 (681)
Q Consensus 197 -~~~~~~~A~~~~~~m~~~-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 249 (681)
..|+.+.....|++.... |.. -....|..++..-..++++.....+++.+++.
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 456777788888887765 321 24456777888778888999999999999875
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.62 E-value=14 Score=38.30 Aligned_cols=148 Identities=17% Similarity=0.183 Sum_probs=79.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 233 VNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKL 312 (681)
Q Consensus 233 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (681)
.|+++.|..++..+.+ ...+.+++.+-++|-.++|+++ .+|.... .....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCch-------hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHH
Confidence 4555555544443331 2344556666666666666553 2222211 1223466777777776
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH
Q 040136 313 VDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDV 392 (681)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 392 (681)
..+.. +..-|..|.++....|++..|.+.|.+... |..|+-.+...|+.+.... +-....+.|..
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~-la~~~~~~g~~--- 724 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAV-LASLAKKQGKN--- 724 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHH-HHHHHHhhccc---
Confidence 65542 445677777777777777777777766443 4445555555565554444 33333333322
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH
Q 040136 393 FTFNILIHGLCKQRRFGSALELVNA 417 (681)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~A~~~~~~ 417 (681)
|...-+|...|+++++.+++..
T Consensus 725 ---N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 ---NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---chHHHHHHHcCCHHHHHHHHHh
Confidence 2233355566777777666644
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=84.21 E-value=21 Score=31.06 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHC-----CCCCCH-HHHHHHHHHHHhcC--
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKAL---CNAGAVDKGLGLFEEMMRK-----GIKPSS-ISCNILINGLCRTR-- 569 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~-----~~~p~~-~~~~~l~~~~~~~g-- 569 (681)
++.|.+.++.....+ |.|...++.-..++ .+.....++..++++.+++ .+.|+. .++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 566777776655553 66666555444444 3444444555555544432 245654 77888888887654
Q ss_pred --C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 570 --K-------ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG 620 (681)
Q Consensus 570 --~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (681)
+ +++|.+.|++... ..|+..+|+.-+... .+|-++..++.+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 2 4556666666665 578988988766532 46777777777764
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.97 E-value=5.7 Score=30.52 Aligned_cols=46 Identities=9% Similarity=0.093 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 503 EAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 503 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
+..+-++.+.....-|++.+..+.+.+|.+.+++..|+++|+.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555554444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.76 E-value=37 Score=31.49 Aligned_cols=222 Identities=14% Similarity=0.102 Sum_probs=105.8
Q ss_pred CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHH
Q 040136 285 GCTSDVQTFNDVIHGL-CKVNRIHEAAKLVDRMLVRGFTPDD---ITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLN 360 (681)
Q Consensus 285 ~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 360 (681)
+..||+..=|..-.+- .+...+++|+.-|.+.++....... .....++..+.+.|++++....+.++..
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT------- 93 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT------- 93 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH-------
Confidence 3456654433322111 2345678888888877764222111 2334566777777777777766665432
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCcCHhhHHHHHH
Q 040136 361 TVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK-----GCEPNIVTYTILVD 435 (681)
Q Consensus 361 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~ll~ 435 (681)
.|.. .... .-+..+.+.++.......+.+.....++.-++. +-..--.+-..|..
T Consensus 94 -YIkS-----------------AVTr--NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgk 153 (440)
T KOG1464|consen 94 -YIKS-----------------AVTR--NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGK 153 (440)
T ss_pred -HHHH-----------------HHhc--cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhh
Confidence 1111 1111 112334445555444444444333333322211 00111123345666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040136 436 GFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG 515 (681)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (681)
.|...+.+.+..++++++....-.-+...+... |.. -...|..-|..|....+-..-..+|++.+...
T Consensus 154 l~fd~~e~~kl~KIlkqLh~SCq~edGedD~kK-----------GtQ-LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 154 LYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKK-----------GTQ-LLEIYALEIQMYTEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred hheeHHHHHHHHHHHHHHHHHhccccCchhhhc-----------cch-hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 777777788877888777664222111111111 111 22455556666777777666667777655432
Q ss_pred -CCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHH
Q 040136 516 -CPLDEITYNGLIK-----ALCNAGAVDKGLGLFEEM 546 (681)
Q Consensus 516 -~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~ 546 (681)
.-|.+.... ++. ...+.|++++|..-|-++
T Consensus 222 SAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 222 SAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred ccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 123333322 232 234567777765544333
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.75 E-value=1.8 Score=25.39 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
|..+...|...|++++|...|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555555555555555555544
|
... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.72 E-value=12 Score=33.29 Aligned_cols=72 Identities=11% Similarity=-0.053 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHH
Q 040136 572 NTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE---GIYPDAVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A 644 (681)
+.|.+.|-++...+.--++.....|...|. ..|.++|+.++.+..+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 334444444444333333333333333222 34445555554444443 1133444555555555555555444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.62 E-value=2.7 Score=26.01 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 626 VTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.+++.|...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777777664
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.54 E-value=43 Score=32.12 Aligned_cols=15 Identities=13% Similarity=-0.243 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHcCC
Q 040136 114 FDVYYVLIDKLGANK 128 (681)
Q Consensus 114 ~~~~~~l~~~~~~~g 128 (681)
..+....+..+...|
T Consensus 37 ~~vR~~A~~aL~~~~ 51 (280)
T PRK09687 37 SLKRISSIRVLQLRG 51 (280)
T ss_pred HHHHHHHHHHHHhcC
Confidence 333444444444444
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=82.97 E-value=82 Score=34.89 Aligned_cols=221 Identities=13% Similarity=0.028 Sum_probs=116.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChh-------hHHHHHH-HHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 040136 231 CMVNEVDSACSLLRDMTKHGCVPNSV-------VYQTLIH-ALSKSNRVSEALMLLEEMILMG----CTSDVQTFNDVIH 298 (681)
Q Consensus 231 ~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~~~~~~A~~~~~~m~~~~----~~~~~~~~~~li~ 298 (681)
.-..++++|..++.++...-..|+.. .++.+-. +....|+++.|.++.+.....= -.+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34678899998888876542222221 3333322 2334788899998888877531 2234555666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH-----HHHHHhcCCHH--HHHHHHhhcCC-----C-----ChHHHHH
Q 040136 299 GLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVL-----MHGLCRTGRVD--EARALLNKIPS-----A-----NVVLLNT 361 (681)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~--~A~~~~~~~~~-----~-----~~~~~~~ 361 (681)
+..-.|++++|..+.....+..-.-++..+... ...+...|+.. +....|..+.. . -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 777889999999888877665333344433322 23345566332 22233332222 1 1223444
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC----HhhHHHH-
Q 040136 362 VINGYVIS-GRFDEAKAIFYDSMLSVGCIPDVFT--FNILIHGLCKQRRFGSALELVNAMAVKGCEPN----IVTYTIL- 433 (681)
Q Consensus 362 l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l- 433 (681)
+..++.+. +...++.. -++.-......|-... +..++......|+.++|...++++......+. ...-...
T Consensus 586 ll~~~~r~~~~~~ear~-~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARL-GIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhh-cchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 45555441 12222222 1221111111111111 22567777889999999999988876533332 1111112
Q ss_pred -HHHHHhcCCHHHHHHHHHH
Q 040136 434 -VDGFCKEGQLEKANIIINE 452 (681)
Q Consensus 434 -l~~~~~~g~~~~A~~~~~~ 452 (681)
+......|+...+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 2234456777777655544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.96 E-value=27 Score=29.31 Aligned_cols=50 Identities=12% Similarity=-0.025 Sum_probs=23.2
Q ss_pred cCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcH
Q 040136 126 ANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMK 176 (681)
Q Consensus 126 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 176 (681)
..++..+++.+++.+.-..+. ....-..-...+...|++++|.++|+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 355555555555555443321 22222223333445555555555555555
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.91 E-value=3.3 Score=25.60 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777778888888888888777765
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.77 E-value=46 Score=31.91 Aligned_cols=171 Identities=13% Similarity=0.052 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 483 ANTVTYNTLIHAFLRRGSL-----HEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSIS 557 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 557 (681)
++..+-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+++. ++...
T Consensus 103 ~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~V 175 (280)
T PRK09687 103 KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDV 175 (280)
T ss_pred CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHH
Confidence 3555555555555544321 223333333332 2366666777777777775 5667777776663 34444
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 558 CNILINGLCRTR-KANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHF 636 (681)
Q Consensus 558 ~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 636 (681)
-...+.++...+ ....+...+..++. .++..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++.
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg 246 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHH
Confidence 444555555543 24567777777764 3566666777778888877 56776666666542 2 2346777888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 637 KEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVK 672 (681)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 672 (681)
..|.. +|...+.++.+. .||..+....+.+|.+
T Consensus 247 ~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 247 ELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred hcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 88884 688888888863 4677777777776643
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.52 E-value=28 Score=35.09 Aligned_cols=98 Identities=10% Similarity=0.101 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILI 562 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 562 (681)
|+.....+. .+...|.++.+...+...... +.....+..+++....+.|++++|...-..|+...++ +......-.
T Consensus 323 p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa 398 (831)
T PRK15180 323 PVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAA 398 (831)
T ss_pred chhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-Chhheeeec
Confidence 444444433 356789999999988776654 3445567888899999999999999999999887665 444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 040136 563 NGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
......|-++++...|++...-
T Consensus 399 ~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 399 GSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred ccHHHHhHHHHHHHHHHHHhcc
Confidence 4455667889999999998764
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.38 E-value=10 Score=36.18 Aligned_cols=97 Identities=9% Similarity=0.004 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTR 569 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 569 (681)
.-.+-|.+.|.+++|+..|...+.. .|.|+.++..-..+|.+...+..|+.-...++..+- .-...|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~-~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAV-YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhcc-CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHh
Confidence 3467899999999999999988876 255888888888899999999988887777776421 11234555555555567
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 040136 570 KANTALEFLRDMIHRGLTPDI 590 (681)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~p~~ 590 (681)
+..+|.+-++..++ +.|+.
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHh--hCccc
Confidence 77777777777776 46663
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.05 E-value=46 Score=31.41 Aligned_cols=71 Identities=13% Similarity=0.006 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCCHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVAN-----GFVPNDATW 663 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~~~~~~~ 663 (681)
+++.....|..+|.+.+|.++-+..+..+ +.+...+-.|+..+...|+--+|.+-++++.+. |+..|....
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34556677889999999999999988853 556777888889999999988888777776653 666655443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.61 E-value=37 Score=30.00 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYN-----SLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
.+...+...+++++|...++..+.. |....+. .|.......|.+++|...++.....+. .......-.++
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDi 168 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDI 168 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhH
Confidence 3456678899999999999988864 2222333 455677899999999999988776432 23445566788
Q ss_pred HHhcCChhHHHHHHHHHHHCC
Q 040136 635 HFKEGLFDDAFLILHKGVANG 655 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~g 655 (681)
+...|+.++|+.-|++.++.+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 999999999999999999875
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.56 E-value=2.7 Score=24.62 Aligned_cols=27 Identities=30% Similarity=0.376 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+|..+...+...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777777766665
|
... |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.22 E-value=1e+02 Score=34.73 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCh--hHHHHHHHHHHHCCCCCCHHHHH---
Q 040136 223 FGVVMKALCMVNEVDSACSLLRDMTKHGC---VPNSVVYQTLIHALSKSNRV--SEALMLLEEMILMGCTSDVQTFN--- 294 (681)
Q Consensus 223 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~~~~~~~~~~~--- 294 (681)
|..|+..|...|+.++|.+++.+.....- .--...+..+++-+.+.+.. +-+++.-....+....-....+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 66677777777777777777777765320 00111222344444444433 33443333333221000000000
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 040136 295 ---------DVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCR 337 (681)
Q Consensus 295 ---------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (681)
..+-.+.+....+-++.+++.+....-.++....+.++..|+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1223345555666666677666655444455555666655543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=80.78 E-value=60 Score=31.92 Aligned_cols=136 Identities=14% Similarity=0.089 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 040136 484 NTVTYNTLIHAFLRR------------GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI 551 (681)
Q Consensus 484 ~~~~~~~li~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 551 (681)
|..+|..++..--.. .-.+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.|++++....
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP 96 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 677777776532221 11455678888888884 67888888889999999899999999999998743
Q ss_pred CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHC------CC------CCC--HHH---HHHHHHHHHhcCCHHHHHH
Q 040136 552 KPSSISCNILINGLCR---TRKANTALEFLRDMIHR------GL------TPD--IVT---YNSLINGLCKMGCIQEALN 611 (681)
Q Consensus 552 ~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~------~~------~p~--~~~---~~~l~~~~~~~g~~~~A~~ 611 (681)
. +...|...++.... .-.++....+|.+.+.. +. .++ ... +..+...+..+|-.+.|+.
T Consensus 97 ~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava 175 (321)
T PF08424_consen 97 G-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA 175 (321)
T ss_pred C-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence 2 67777777766544 23456666666554432 11 011 112 2223334458899999999
Q ss_pred HHHHHHHCCC
Q 040136 612 LFDKLQAEGI 621 (681)
Q Consensus 612 ~~~~~~~~~~ 621 (681)
+++.+++.++
T Consensus 176 ~~Qa~lE~n~ 185 (321)
T PF08424_consen 176 LWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHc
Confidence 9999999764
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.78 E-value=13 Score=33.31 Aligned_cols=76 Identities=24% Similarity=0.217 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 040136 488 YNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG--IKPSSISCNILING 564 (681)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~ 564 (681)
.+..+..+.+.++.++++...++-++.. |.|......++..||-.|++++|..-++-.-+.. ..+...+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566778888999999888877763 6677788888899999999999988887766542 23345666666654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.74 E-value=92 Score=34.02 Aligned_cols=187 Identities=12% Similarity=0.087 Sum_probs=101.7
Q ss_pred HHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHH-cCCCchHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhCCChH
Q 040136 95 DTSMEIFTWAGSQEGYCHTF--DVYYVLIDKLG-ANKEFKVIDSVLLQMKEEGIICRE-----SLFILIMKYYGRGGVPG 166 (681)
Q Consensus 95 ~~al~~~~~~~~~~~~~~~~--~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~ 166 (681)
..|++.++.+.++...+|.. .++..++.++. ...+++.|+..+++.......++- .....+++.|.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 35677777766555444433 34555666666 667888888888876553321111 12235667776666655
Q ss_pred HHHHHHHHcHhhcCC---CCCHHhHHHH-HHHHHhcCCcCcHHHHHHHHHHCC---CCCChhhHHHHHHHHH--hcCChh
Q 040136 167 QATRLLLDMKSVYGC---QPTFRSYNVV-LDVLVAGNCHKVAPNLFYDMLSKG---ISPTVYTFGVVMKALC--MVNEVD 237 (681)
Q Consensus 167 ~A~~~~~~~~~~~~~---~~~~~~~~~l-l~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~g~~~ 237 (681)
|...+++..+...- .+-...+..+ +..+...+++..|.+.++.+...- ..|...++-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 87777776533221 1222233333 333334468888888887776542 2333444444554443 345456
Q ss_pred HHHHHHHHHHhCC---------CCCChhhHHHHHHHHH--hcCChhHHHHHHHHHH
Q 040136 238 SACSLLRDMTKHG---------CVPNSVVYQTLIHALS--KSNRVSEALMLLEEMI 282 (681)
Q Consensus 238 ~A~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~ 282 (681)
.+.+.++.+.... ..|-..+|..+++.++ ..|++..+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666553211 1344556666666554 4666656665555443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=80.65 E-value=53 Score=31.16 Aligned_cols=117 Identities=10% Similarity=0.031 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHh-cCCcCcH-HHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChhHH
Q 040136 163 GVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVA-GNCHKVA-PNLFYDMLSK-GISPTVYTFGVVMKALCMVNEVDSA 239 (681)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~A-~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~A 239 (681)
....+|+.+|+....+..+-.|......+++.+.. .+..-.| .++.+-+... +-.++..+....+..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34556777776433111223456666666776665 3322222 2222333222 3456677777788888888888888
Q ss_pred HHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 040136 240 CSLLRDMTKH-GCVPNSVVYQTLIHALSKSNRVSEALMLLE 279 (681)
Q Consensus 240 ~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 279 (681)
.++++..... +...|...|...|+.....|+..-..++..
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 8888776654 445677788888888888888765555444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.08 E-value=97 Score=33.86 Aligned_cols=185 Identities=12% Similarity=0.105 Sum_probs=100.0
Q ss_pred HHHHHHHHcHhhcCCCCCHH--hHHHHHHHHH-hcCCcCcHHHHHHHHHHCCCCCChh-----hHHHHHHHHHhcCChhH
Q 040136 167 QATRLLLDMKSVYGCQPTFR--SYNVVLDVLV-AGNCHKVAPNLFYDMLSKGISPTVY-----TFGVVMKALCMVNEVDS 238 (681)
Q Consensus 167 ~A~~~~~~~~~~~~~~~~~~--~~~~ll~~~~-~~~~~~~A~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~g~~~~ 238 (681)
.|++.++.+.+...++|... ++--+...|. ...+++.|...+++....--.++.. ....+++.+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34555655553344444333 3444555555 5677888888888765543222211 1234456666666555
Q ss_pred HHHHHHHHHhCC----CCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--hcCCHHH
Q 040136 239 ACSLLRDMTKHG----CVPNSVVYQTL-IHALSKSNRVSEALMLLEEMILMG---CTSDVQTFNDVIHGLC--KVNRIHE 308 (681)
Q Consensus 239 A~~~~~~~~~~~----~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~~~~~~ 308 (681)
|...+++..+.- ..+-...+..+ +..+...++...|.+.++.+.... ..|....+..++.+.. ..+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888887766531 11222233333 222333478888998888877432 2344455555555444 3455667
Q ss_pred HHHHHHHHHHCCC---------CCCcccHHHHHHHH--HhcCCHHHHHHHHhhcC
Q 040136 309 AAKLVDRMLVRGF---------TPDDITYGVLMHGL--CRTGRVDEARALLNKIP 352 (681)
Q Consensus 309 a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 352 (681)
+.+.++.+..... .|-..++..+++.+ ...|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777766643211 22334555555544 45677777777666544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.04 E-value=48 Score=30.26 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=10.1
Q ss_pred HhcCCHHHHHHHHHHH
Q 040136 438 CKEGQLEKANIIINEM 453 (681)
Q Consensus 438 ~~~g~~~~A~~~~~~~ 453 (681)
.-.+.+++|.++|.+.
T Consensus 25 gg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA 40 (288)
T ss_pred CCCcchHHHHHHHHHH
Confidence 3345677777777654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 85.6 bits (210), Expect = 2e-17
Identities = 23/201 (11%), Positives = 55/201 (27%), Gaps = 21/201 (10%)
Query: 418 MAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDML 477
+ QL A L ++
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLA--------------------HHLLVVHHGQR 157
Query: 478 LEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVD 537
+ YN ++ + R+G+ E ++ + G D ++Y ++ +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 538 KGLG-LFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSL 596
+ E+M ++G+K ++ +L++ R + P V + L
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
Query: 597 INGLCKMGCIQEALNLFDKLQ 617
+ + L L+
Sbjct: 278 LRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 80.2 bits (196), Expect = 1e-15
Identities = 21/180 (11%), Positives = 54/180 (30%), Gaps = 15/180 (8%)
Query: 353 SANVVLLNTVINGYVISGRFDEAKAIF--YDSMLSVGCIPDVFTFNILIHGLCKQRRFGS 410
S L +++ + A + + + + +N ++ G +Q F
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 411 ALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKA-NIIINEMLAKGLSLNT------- 462
+ ++ + G P++++Y + ++ Q + +M +GL L
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 463 -----GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP 517
++ + L V + L+ + KL + C
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL 303
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 75.2 bits (183), Expect = 4e-14
Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 8/216 (3%)
Query: 201 HKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQT 260
++A L SP +++ +D + ++
Sbjct: 73 KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA 132
Query: 261 LIHALSKSNRVSEALMLLEEMILM---GCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML 317
++++ A LL + +N V+ G + E ++ +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 318 VRGFTPDDITYGVLMHGLCRTGRVDEA-RALLNKIPSANV----VLLNTVINGYVISGRF 372
G TPD ++Y + + R + L ++ + + +++ +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 373 DEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRF 408
+ L P V T +L K R
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRV 288
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.8 bits (174), Expect = 4e-13
Identities = 15/146 (10%), Positives = 35/146 (23%), Gaps = 32/146 (21%)
Query: 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEM 546
L+ + SL + K +
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPL-------- 145
Query: 547 MRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI 606
A+ L + + YN+++ G + G
Sbjct: 146 ------------------------AHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 607 QEALNLFDKLQAEGIYPDAVTYNTLI 632
+E + + ++ G+ PD ++Y +
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAAL 207
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 2e-09
Identities = 19/181 (10%), Positives = 54/181 (29%), Gaps = 3/181 (1%)
Query: 139 QMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKS--VYGCQPTFRSYNVVLDVLV 196
Q + + ++ + K A LL+ T YN V+
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 197 AGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALC-MVNEVDSACSLLRDMTKHGCVPNS 255
K + + + G++P + ++ ++ + + + L M++ G +
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 256 VVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDR 315
+ L+ ++ + + L + ++ + + KL
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP 296
Query: 316 M 316
+
Sbjct: 297 L 297
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.0 bits (120), Expect = 1e-06
Identities = 13/124 (10%), Positives = 31/124 (25%), Gaps = 3/124 (2%)
Query: 542 LFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC 601
L + + P L+ + L+ +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 602 KMGCIQEALNLFDKL---QAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVP 658
+ A +L + + YN ++ ++G F + +L G P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 659 NDAT 662
+ +
Sbjct: 199 DLLS 202
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 4e-11
Identities = 63/439 (14%), Positives = 119/439 (27%), Gaps = 58/439 (13%)
Query: 253 PNSVV-YQTLIHALSKSNRVSEALMLLEEMILMGCTSD-VQTFNDVIHGLCKVNRIHEAA 310
P+ VV + V L +L + G T D V G + +
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPDQVVAIASNGGGKQALETVQRLL 382
Query: 311 KLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNK---IPSANVVLLNTVINGYV 367
++ + G TPD + G V +L + + VV + + G
Sbjct: 383 PVLCQAH--GLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 440
Query: 368 ISGRFDEAKAIFYDSM-LSVGCIPD-VFTFNILIHGLCKQRRFGSALE-LVNAMAVKGCE 424
+ + L+ P V G L L A +
Sbjct: 441 ALETVQRLLPVLCQTHGLT----PAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT--P 494
Query: 425 PNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGD--------RIEEALGLYQDM 476
+V + G +++ +L + L ++AL Q +
Sbjct: 495 DQVVAIASNIGGKQALATVQRLL----PVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 550
Query: 477 L------LEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKAL 530
L V + ++ ++ +T + A+
Sbjct: 551 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH-------GLTQV-QVVAI 602
Query: 531 CNAGAVDKGLGLFEEMMRK-----GIKPSSISC-NILINGLCRTRKANTALEFLRDMIHR 584
+ + L + ++ G+ P+ + G L L
Sbjct: 603 ASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAH-- 660
Query: 585 GLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFD 642
GLTPD +V S G + +Q L + QA G+ + V +
Sbjct: 661 GLTPDQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTQEQVVAIASNNGGKQALETVQ 718
Query: 643 DAFLILHKGVANGFVPNDA 661
+L + A+G P+
Sbjct: 719 RLLPVLCQ--AHGLTPDQV 735
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 8e-06
Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 14/146 (9%)
Query: 527 IKALCNAGAVDKGLGLFEEMM---RK--GIKPSSI-SCNILINGLCRTRKANTALEFLRD 580
+ A+ + + L + ++ + G+ P + + I G L L
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQ 285
Query: 581 MIHRGLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKE 638
GLTPD +V S G + +Q L + QA G+ PD V +
Sbjct: 286 AH--GLTPDQVVAIASHGGGKQALETVQRLLPVLC--QAHGLTPDQVVAIASHDGGKQAL 341
Query: 639 GLFDDAFLILHKGVANGFVPNDATWY 664
+L + A+G P+
Sbjct: 342 ETVQRLLPVLCQ--AHGLTPDQVVAI 365
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 7e-10
Identities = 49/378 (12%), Positives = 90/378 (23%), Gaps = 61/378 (16%)
Query: 320 GFTPDDI-TYGVLMHGLCRTGRVDEARALLNK---IPSANVVLLNTVINGYVISGRFDEA 375
TP+ + G V +L + + VV + + G
Sbjct: 66 NLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 125
Query: 376 -----KAIFYDSMLSVGCIPD-VFTFNILIHGLCKQRRFGSALE-LVNAMAVKGCEPN-I 427
+A P+ V G + L L A + P +
Sbjct: 126 LPVLCQAHGLT--------PEQVVAIASHDGGKQALETVQALLPVLCQAHGLT---PEQV 174
Query: 428 VTYTILVDGFCKEGQLEKANIIINEMLA-----------KGLSLNTGDRIEEALGLYQDM 476
V G +++ ++ + G + ++ L +
Sbjct: 175 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL-CQ 233
Query: 477 LLEGVTANTVTYNTLIHAFLRRGSLHEA-------HKLVNDMLFRGCPLDEITYNGLIKA 529
V + ++ H L P +
Sbjct: 234 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL--------TPQQVVAIASNSGG 285
Query: 530 LCNAGAVDKGLGLFEEMMRKGIKPSSIS-CNILINGLCRTRKANTALEFLRDMIHRGLTP 588
V + L + + G+ P + G L L GLTP
Sbjct: 286 KQALETVQRLLPVLCQAH--GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTP 341
Query: 589 D-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFL 646
+V S G + +Q L + QA G+ P+ V +
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPEQVVAIASNGGGKQALETVQRLLP 399
Query: 647 ILHKGVANGFVPNDATWY 664
+L + A+G P
Sbjct: 400 VLCQ--AHGLTPEQVVAI 415
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 55/440 (12%), Positives = 107/440 (24%), Gaps = 61/440 (13%)
Query: 253 PNSVV-YQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAK 311
P VV + V L +L + + V G + +
Sbjct: 69 PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT-PQQVVAIASHDGGKQALETVQRLLP 127
Query: 312 LVDRMLVRGFTPDDI-TYGVLMHGLCRTGRVDEARALLNK---IPSANVVLLNTVINGYV 367
++ + G TP+ + G V +L + + VV + + G
Sbjct: 128 VLCQAH--GLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQ 185
Query: 368 ISGRFDEA-----KAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALE-LVNAMAVK 421
+A V G L L A +
Sbjct: 186 ALETVQRLLPVLCQAHGLTPQ-------QVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238
Query: 422 GCEPN-IVTYTILVDGFCKEGQLEKANIIINEMLA-----------KGLSLNTGDRIEEA 469
P +V G +++ ++ + + ++
Sbjct: 239 ---PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRL 295
Query: 470 LGLY-QDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIK 528
L + Q L V + ++ ++ +T +
Sbjct: 296 LPVLCQAHGLT--PQQVVAIASNGGGKQALETVQRLLPVLCQAH-------GLTPQ-QVV 345
Query: 529 ALCNAGAVDKGLGLFEEMMRK-----GIKPSSISC-NILINGLCRTRKANTALEFLRDMI 582
A+ + + L + ++ G+ P + G L L
Sbjct: 346 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH 405
Query: 583 HRGLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGL 640
GLTP+ +V S G + +Q L + QA G+ P V +
Sbjct: 406 --GLTPEQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGRPALES 461
Query: 641 FDDAFLILHKGVANGFVPND 660
A + ND
Sbjct: 462 IVAQLSRPDP--ALAALTND 479
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 22/121 (18%), Positives = 34/121 (28%), Gaps = 10/121 (8%)
Query: 550 GIKPSSISC-NILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLINGLCKMGCIQ 607
+ P + G L L GLTP +V S G + +Q
Sbjct: 66 NLTPEQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASHDGGKQALETVQ 123
Query: 608 EALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDA-TWYI 665
L + QA G+ P+ V + +L + A+G P
Sbjct: 124 RLLPVLC--QAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ--AHGLTPEQVVAIAS 179
Query: 666 L 666
Sbjct: 180 N 180
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 8e-08
Identities = 92/682 (13%), Positives = 181/682 (26%), Gaps = 216/682 (31%)
Query: 67 FDLNELRKSLHKITPFQLCKLLRLPLDV----DTSMEIFTWAGSQEGYCHTFDVYYVLID 122
F+ E + I + D D I + +E D ++++
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVD-NFDCKDVQDMPKSILS---KEE-----ID--HIIMS 57
Query: 123 KLGANKEFKVIDSVLLQMKEEGIICRESLFI----------LIMKYYGRGGVPGQATRLL 172
K + ++ L K+E ++ + F+ L+ P TR+
Sbjct: 58 KDAVSGTLRLFW--TLLSKQEEMVQK---FVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 173 LDMKS-VYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVM---- 227
++ + +Y F YNV K+ L +K + + G +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPY----LKLRQALLELRPAKNV--LID--G--VLGSG 162
Query: 228 KALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCT 287
K + +V + + + L N L +L+++
Sbjct: 163 KT-WVALDV------CLSYKVQCKMDFKIFWLNL----KNCNSPETVLEMLQKL----LY 207
Query: 288 SDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARAL 347
+ + + + R L++ L
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--------------------SKPYENCL 247
Query: 348 LNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRR 407
L VLLN V N + F+ + C IL+ R
Sbjct: 248 L--------VLLN-VQNAKAWNA-FN------------LSC-------KILL-----TTR 273
Query: 408 FGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIE 467
F + ++A ++ + +L K L D
Sbjct: 274 FKQVTDFLSAATTT-----HISLDHHSMTLTPDEVKS--------LLLKYLDCRPQDLPR 320
Query: 468 EA-------LGLYQDMLLEGV-------TANTVTYNTLIHAFLRRGSLHEAHKLVNDM-L 512
E L + + + +G+ N T+I + L E K+ + + +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 513 FRGCPLD-EITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-----KPSSISCNILINGLC 566
F P I L+ + + + ++ + + K S+IS + L
Sbjct: 381 F---PPSAHIPTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 567 RTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAV 626
+ AL HR S++ + N+ ++ + P +
Sbjct: 437 VKLENEYAL-------HR----------SIV----------DHYNIPKTFDSDDLIPPYL 469
Query: 627 T---YNTLISWH------------FKEGLFDDAFL---ILHKGVANG------------- 655
Y+ I H F+ D FL I H A
Sbjct: 470 DQYFYS-HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 656 -----FVPNDATWYILVRNLVK 672
ND + LV ++
Sbjct: 529 FYKPYICDNDPKYERLVNAILD 550
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 3e-05
Identities = 79/499 (15%), Positives = 146/499 (29%), Gaps = 153/499 (30%)
Query: 1 MLKSPK--LTSHVSKTLFKSLSKRPSFVF-FSFGFSNS-----------CTIDYSNCTAR 46
+L S K + V + +K K +F + NS N T+R
Sbjct: 158 VLGSGKTWVALDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 47 SICQSNDSESENEW-ERLLKPFDLNELRKSL-------HK--ITPFQL-CKLLRLPLDVD 95
S SN + L + L + F L CK+L
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL------- 269
Query: 96 TSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILI 155
T T + D L A + L + E +L+
Sbjct: 270 -----LT----------TRFKQ--VTDFLSAATTTHIS----LDHHSMTLTPDEVKSLLL 308
Query: 156 MKYYG--RGGVPGQATR---LLLDM--KSVYGCQPTFRSYNVVLDVLVAGNCHKVAP--N 206
KY +P + L + +S+ T+ ++ V NC K+
Sbjct: 309 -KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIE 360
Query: 207 LFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALS 266
++L ++ S+ +P +++ + +
Sbjct: 361 SSLNVLEPAEYRKMFD----------------RLSVFPPSAH---IP-TILLSLIWFDVI 400
Query: 267 KSNRVSEALMLLEEMI---LMGCTSDVQTFNDVIHGL-----CKVN---RIHEAAKLVDR 315
K S+ ++++ ++ L+ T + I + K+ +H +VD
Sbjct: 401 K----SDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYALH--RSIVDH 452
Query: 316 -MLVRGFTPDDIT--------YGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGY 366
+ + F DD+ Y + H L + L + L+
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM-TLFRMV------FLDF----- 500
Query: 367 VISGRFDEAKAIFYDSML--SVGCIPDVFTFNILIHGLCKQRRF-----GSALELVNAMA 419
RF E K I +DS + G I + + L + + LVNA+
Sbjct: 501 ----RFLEQK-IRHDSTAWNASGSILN------TLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 420 --VKGCEPNIVT--YTILV 434
+ E N++ YT L+
Sbjct: 550 DFLPKIEENLICSKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 63/433 (14%), Positives = 128/433 (29%), Gaps = 123/433 (28%)
Query: 3 KSPKLTSHVSKTLFKSLSKRPSF--------------VFFSFGFSNSCTI-----DYSNC 43
+ KL H + + L K + + +F S C I
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--CKILLTTRFKQVT 278
Query: 44 TA--------RSICQSNDSESENEWERLLKPF---DLNELRKSLHKITPFQLCKLLRLPL 92
S+ + + + +E + LL + +L + + P +L
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-------- 330
Query: 93 DVDTSMEIFTWAGSQEGYCHTFDVY-YVLIDKLGANKEFKVIDSVLLQMKEEGIICR--- 148
S+ I ++G T+D + +V DKL +I+S L ++ R
Sbjct: 331 ----SI-I--AESIRDGLA-TWDNWKHVNCDKLT-----TIIESSLNVLEPAEY--RKMF 375
Query: 149 ESLFILIMKYYGRGGV--PGQATRLL-LDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAP 205
+ L + P L+ D+ + V+ V+ HK
Sbjct: 376 DRLSVF------PPSAHIPTILLSLIWFDVI-----------KSDVMVVVN--KLHK--- 413
Query: 206 NLFYDMLSKGISPTVYTF-GVVMKALCMVNE--------VDSACSLLRDMTKHGCVPNSV 256
Y ++ K + + + ++ + VD ++ + +P +
Sbjct: 414 ---YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYL 469
Query: 257 ---VYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTF--NDVIH-GLCKVNRIHEAA 310
Y + H L E + L + L D + F + H
Sbjct: 470 DQYFYSHIGHHLKNIEH-PERMTLFRMVFL-----DFR-FLEQKIRHDSTAWNASGSILN 522
Query: 311 KLVDRMLVRGF-TPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVIS 369
L + + +D Y L+ A+L+ +P L+ + +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLV------------NAILDFLPKIEENLICSKYTDLLRI 570
Query: 370 GRFDEAKAIFYDS 382
E +AIF ++
Sbjct: 571 ALMAEDEAIFEEA 583
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 41/327 (12%), Positives = 82/327 (25%), Gaps = 49/327 (14%)
Query: 335 LCRTGRVDEARALLNKI----PSANVVLLNTVINGYVISGRFDEA-----KAIFYDSMLS 385
+EA P+ V + + Y+ +G ++ KA+
Sbjct: 35 FFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK---- 89
Query: 386 VGCIPD-VFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLE 444
PD F A+ ++ +++ G +L K+
Sbjct: 90 ----PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKV 145
Query: 445 KANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEA 504
+ + L + + G++ L + Y+T
Sbjct: 146 LNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD------- 198
Query: 505 HKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSIS------C 558
L + L + K ++ ++ +
Sbjct: 199 ------------ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALAL 246
Query: 559 NILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618
A L++ I+ L P +Y L L QE F K A
Sbjct: 247 CYTGIFHFLKNNLLDAQVLLQESIN--LHPTPNSYIFLALTLADKENSQEFFKFFQK--A 302
Query: 619 EGIYPD-AVTYNTLISWHFKEGLFDDA 644
+ P+ TY +F + +A
Sbjct: 303 VDLNPEYPPTYYHRGQMYFILQDYKNA 329
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 37/323 (11%), Positives = 74/323 (22%), Gaps = 43/323 (13%)
Query: 339 GRVDEARALLNKI-------PSANVVLLNTVINGYVISGRFDEA-----KAIFYDSMLSV 386
G + ++ A V L N + + F+EA AI D
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD----- 55
Query: 387 GCIPDVFTFNILIHGLC--KQRRFGSALELVNAMAVKGCEPNIV-TYTILVDGFCKEGQL 443
P+ F I C +E A++ +P+ G
Sbjct: 56 ---PNEPVFYSNI-SACYISTGDLEKVIEFTTK-ALE-IKPDHSKALLRRASANESLGNF 109
Query: 444 EKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHE 503
A ++ + G L + + + SL
Sbjct: 110 TDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS 169
Query: 504 AHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563
+ + L Y+ L +A ++ + S
Sbjct: 170 FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD------ 223
Query: 564 GLCRTRKANTALEFLRDMIHRGLTPDIV-TYNSLINGLCKMGCIQEALNLFDKLQAEGIY 622
++ L L + + +A L + + ++
Sbjct: 224 ------MYHSLLSANTVDDP--LRENAALALCYTGIFHFLKNNLLDAQVLLQE--SINLH 273
Query: 623 PDAVTYNTLISWHFKEGLFDDAF 645
P +Y L + + F
Sbjct: 274 PTPNSYIFLALTLADKENSQEFF 296
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 16/150 (10%)
Query: 241 SLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGL 300
L R+M++ V N+ AL L + + C + L
Sbjct: 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLEC------MAMTVQIL 140
Query: 301 CKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLC----RTGRVDEARALLNKI---PS 353
K++R+ A K + +M + D L ++ +A + ++ S
Sbjct: 141 LKLDRLDLARKELKKMQDQD--EDATLTQ-LATAWVSLAAGGEKLQDAYYIFQEMADKCS 197
Query: 354 ANVVLLNTVINGYVISGRFDEAKAIFYDSM 383
++LLN ++ GR++ A+ + +++
Sbjct: 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 11/194 (5%)
Query: 454 LAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLF 513
+ E A L NT L + L + +
Sbjct: 3 MELAHREYQAGDFEAAERHCMQ-LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI- 60
Query: 514 RGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSI-SCNILINGLCRTRKAN 572
+ PL Y+ L G + + + + +R +KP I L L
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR--LKPDFIDGYINLAAALVAAGDME 118
Query: 573 TALEFLRDMIHRGLTPDIV-TYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNT 630
A++ + PD+ + L N L +G ++EA + K A P+ AV ++
Sbjct: 119 GAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLK--AIETQPNFAVAWSN 174
Query: 631 LISWHFKEGLFDDA 644
L +G A
Sbjct: 175 LGCVFNAQGEIWLA 188
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 39/283 (13%), Positives = 85/283 (30%), Gaps = 21/283 (7%)
Query: 366 YVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEP 425
Y +G + AK + L + L K + AL L+ P
Sbjct: 127 YCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGE-----TNP 178
Query: 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANT 485
++G + + + +G + A Y++ L+
Sbjct: 179 FRKDEKNANKLLMQDGGI---KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CY 234
Query: 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEE 545
++ L+ L + E ++ D L N + + L E+
Sbjct: 235 EAFDQLVSNHLL-TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293
Query: 546 MMR--KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLINGLCK 602
+ G++ SS + L + L ++ + P + Y + L +
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE--IDPYNLDVYPLHLASLHE 351
Query: 603 MGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDA 644
G + + + L +P+ AVT+ + ++ +A
Sbjct: 352 SGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEA 392
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 681 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.51 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.41 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.39 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.36 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.29 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.26 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.24 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.22 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.22 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.08 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.07 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.06 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.99 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.98 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.97 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.97 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.94 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.91 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.88 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.88 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.85 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.84 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.83 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.79 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.78 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.74 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.73 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.71 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.61 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.59 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.58 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.57 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.57 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.56 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.55 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.53 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.52 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.52 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.51 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.51 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.51 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.49 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.48 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.46 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.46 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.45 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.45 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.4 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.4 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.39 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.38 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.37 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.34 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.33 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.31 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.26 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.26 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.24 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.21 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.2 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.19 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.19 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.18 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.18 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.12 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.11 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.1 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.08 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.08 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.03 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.02 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.0 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.0 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.0 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.0 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.98 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.97 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.92 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.91 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.91 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.88 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.87 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.82 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.78 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.73 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.71 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.69 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.69 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.62 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.61 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.53 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.44 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.41 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.39 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.38 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.26 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.18 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.17 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.03 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.81 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.77 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.71 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.62 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.43 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.42 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.41 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.39 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.31 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.13 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.09 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.07 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.82 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.64 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.61 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.61 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.57 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.32 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.18 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.16 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.12 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.07 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.05 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.67 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.66 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.57 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.4 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.28 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.98 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.76 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.75 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.46 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.03 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.76 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.1 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.89 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.42 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.34 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.75 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 88.71 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.44 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.89 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.47 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.26 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.96 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.44 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 83.39 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 82.24 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.65 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.14 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.18 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.13 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.02 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-40 Score=354.70 Aligned_cols=498 Identities=12% Similarity=0.033 Sum_probs=391.6
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
++...|..++..+.+.|++++|..+|+++.... |+...+..++.+|.+.|++++|..+|+++.. .+++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHH
Confidence 456667777777777777777777777777544 3556667777777777777777777777641 15667777777
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRV 271 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 271 (681)
+.+|.+.|++++|+++|+++. |+.. ....+.+.++ ...+.+++..+|+.++.+|.+.|++
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSC-----TTC--------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhHHHHHHHHhccC-----Cccc----cccccccccc-----------cccccchhHHHHHHHHHHHHHcCCH
Confidence 777777777777777776422 1110 0011111111 1224456788999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 040136 272 SEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAA--KL-VDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALL 348 (681)
Q Consensus 272 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 348 (681)
++|.++|++|.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|..++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 99999999998764 335556665555443333222211 11 444444444445566777788899999999999999
Q ss_pred hhcCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC
Q 040136 349 NKIPS--ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPN 426 (681)
Q Consensus 349 ~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 426 (681)
+++.. ++..+|+.++.+|.+.|++++|++ +++.+...+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLA-ITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 99988 889999999999999999999999 888887655 3377889999999999999999999999998663 557
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 427 IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 427 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
..++..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD------------------------PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8899999999999999999999999988753 2378899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 040136 507 LVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHR-- 584 (681)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 584 (681)
+|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+... .+..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 429 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 429 AYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 999999874 66889999999999999999999999999998743 37899999999999999999999999999875
Q ss_pred --CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 040136 585 --GLTPD--IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 585 --~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
+..|+ ..+|..++.+|.+.|++++|++.++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++++ +.|+.
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~ 583 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNE 583 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCC
Confidence 66787 7899999999999999999999999999864 44789999999999999999999999999998 45655
Q ss_pred H-HHHHHH
Q 040136 661 A-TWYILV 667 (681)
Q Consensus 661 ~-~~~~ll 667 (681)
. .+..+.
T Consensus 584 ~~~~~~l~ 591 (597)
T 2xpi_A 584 IMASDLLK 591 (597)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 4 444443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=348.57 Aligned_cols=481 Identities=10% Similarity=0.002 Sum_probs=345.5
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 040136 84 LCKLLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG 163 (681)
Q Consensus 84 ~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (681)
+...+...|+++.|+.+|+.+... .|+..++..++.++.+.|++++|..+|+++... +++..++..++.+|.+.|
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHh
Confidence 334445689999999999998743 357788899999999999999999999998654 458889999999999999
Q ss_pred ChHHHHHHHHHcHhhc--------------CCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHH
Q 040136 164 VPGQATRLLLDMKSVY--------------GCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKA 229 (681)
Q Consensus 164 ~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 229 (681)
++++|.++|+++.... +.+.+..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+...
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~ 243 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSN 243 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHh
Confidence 9999999999654222 22334566666666666666666666666666665311 33344444433
Q ss_pred HHhcCChhHHH--HH-HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 230 LCMVNEVDSAC--SL-LRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRI 306 (681)
Q Consensus 230 ~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 306 (681)
+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++..+.+.|++
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCH
T ss_pred hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCH
Confidence 33222211111 11 333333333333444555566666666666666666666543 35666666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040136 307 HEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSV 386 (681)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 386 (681)
++|.++|+++.+.+. .+..++..++.++.+.|++++|..++ +.+...
T Consensus 322 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~--------------------------------~~~~~~ 368 (597)
T 2xpi_A 322 IDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLIS--------------------------------NDLVDR 368 (597)
T ss_dssp HHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHH--------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHH--------------------------------HHHHhh
Confidence 666666666665432 24455555555555555555555544 444432
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccH
Q 040136 387 GCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRI 466 (681)
Q Consensus 387 ~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 466 (681)
.+.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+++.+.+
T Consensus 369 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------- 437 (597)
T 2xpi_A 369 -HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--------- 437 (597)
T ss_dssp -CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------
Confidence 24467778888888888888888888888887653 3467788888888888898888888888887753
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040136 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEM 546 (681)
Q Consensus 467 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 546 (681)
+.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|..+|+++
T Consensus 438 ---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 438 ---------------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp ---------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2377888889999999999999999999988764 567888999999999999999999999998
Q ss_pred HHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 547 MRK----GIKPS--SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG 620 (681)
Q Consensus 547 ~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (681)
.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..++.+|.+.|++++|.+.|+++.+.
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~- 579 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI- 579 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-
Confidence 876 56777 7889999999999999999999999998863 447889999999999999999999999999985
Q ss_pred CCC-CHHHHHHHHHHH
Q 040136 621 IYP-DAVTYNTLISWH 635 (681)
Q Consensus 621 ~~p-~~~~~~~l~~~~ 635 (681)
.| +...+..+..+|
T Consensus 580 -~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 580 -SPNEIMASDLLKRAL 594 (597)
T ss_dssp -CTTCHHHHHHHHHTT
T ss_pred -CCCChHHHHHHHHHH
Confidence 45 455666665554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-26 Score=233.21 Aligned_cols=249 Identities=15% Similarity=0.071 Sum_probs=127.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHH
Q 040136 395 FNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQ 474 (681)
Q Consensus 395 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 474 (681)
+..+...+...|++++|...++++.+.. +.+..+|..+...+.+.|++++|...|+++.+.++
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------------- 200 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP---------------- 200 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT----------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------------
Confidence 3334444444444444444444444431 22334444555555555555555555555544321
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 040136 475 DMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS 554 (681)
Q Consensus 475 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 554 (681)
.+...+..+...+...|++++|...+++..... |.+..++..+..+|.+.|++++|...|+++++.+. .+
T Consensus 201 --------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~ 270 (388)
T 1w3b_A 201 --------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HF 270 (388)
T ss_dssp --------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SC
T ss_pred --------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CC
Confidence 134445555555555555555555555555442 33455555555555555555555555555555422 13
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
..++..++..+.+.|++++|.+.++++.+. .+.+..++..+..++.+.|++++|+..++++.+. .+.+..++..++.+
T Consensus 271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 271 PDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHH
Confidence 445555555555566666666666655553 2334555555566666666666666666665553 12234555556666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 040136 635 HFKEGLFDDAFLILHKGVANGFVPN-DATWYILVRNLVKEI 674 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g 674 (681)
|.+.|++++|...++++++ +.|+ ...+..+...+...|
T Consensus 349 ~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 349 LQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 6666666666666666654 2332 344445544444433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-26 Score=232.33 Aligned_cols=379 Identities=15% Similarity=0.076 Sum_probs=329.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 226 VMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNR 305 (681)
Q Consensus 226 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (681)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4566788999999999999998875 5567778888889999999999999999988764 6688999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 306 IHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDS 382 (681)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 382 (681)
+++|+..|+++.... +.+..++..+..++...|++++|...|+++.. .+...+..+...+...|++++|.+ .++.
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA-CYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHH-HHHH
Confidence 999999999998763 22455799999999999999999999998766 445678889999999999999999 7777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 040136 383 MLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNT 462 (681)
Q Consensus 383 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 462 (681)
+.... +.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+++.....
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----- 233 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS----- 233 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-----
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----
Confidence 77643 3367889999999999999999999999999874 4467789999999999999999999998887753
Q ss_pred cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040136 463 GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGL 542 (681)
Q Consensus 463 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 542 (681)
+.+..++..+..+|.+.|++++|.+.++++.+.. |.+..++..+..++.+.|++++|...
T Consensus 234 -------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 234 -------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred -------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2367889999999999999999999999999874 66788999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 543 FEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIY 622 (681)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 622 (681)
|+++++.. +.+..++..++..+...|++++|.+.++++.+. .+.+..++..+..++.+.|++++|+..++++.+. .
T Consensus 294 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~ 369 (388)
T 1w3b_A 294 YNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--S 369 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--C
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--C
Confidence 99999874 457889999999999999999999999999985 3446788999999999999999999999999984 5
Q ss_pred CC-HHHHHHHHHHHHhcC
Q 040136 623 PD-AVTYNTLISWHFKEG 639 (681)
Q Consensus 623 p~-~~~~~~l~~~~~~~g 639 (681)
|+ ...|..+...+...|
T Consensus 370 p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 370 PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHhHHHHHHHcc
Confidence 54 667888887776655
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=258.40 Aligned_cols=204 Identities=15% Similarity=0.266 Sum_probs=183.3
Q ss_pred HHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------HHHHH
Q 040136 471 GLYQDMLLEGVTANT-VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGA---------VDKGL 540 (681)
Q Consensus 471 ~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~ 540 (681)
.+.+++.+.+....+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. +++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 334444445544443 46888999999999999999999999999999999999999999987664 68899
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 541 GLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG 620 (681)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (681)
++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 621 IYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEI 674 (681)
Q Consensus 621 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 674 (681)
+.||..+|+.|+++|++.|++++|.+++++|.+.|..|+..||+.++..++..+
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999988653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=254.04 Aligned_cols=206 Identities=14% Similarity=0.163 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCC---------c
Q 040136 132 VIDSVLLQMKEEGIICRE-SLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNC---------H 201 (681)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~ 201 (681)
.++.+..++.+.+....+ .++..++.+|++.|++++|+++|++|. ..|++||..+||++|.+|++.+. .
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 455666777777765554 467889999999999999999999999 78999999999999999987765 4
Q ss_pred CcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 202 KVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEM 281 (681)
Q Consensus 202 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 281 (681)
+.|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 040136 282 ILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRT 338 (681)
Q Consensus 282 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (681)
.+.|+.||..||+.||.+|++.|+.++|.+++++|.+.|..|+..||+.++..++..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-23 Score=223.88 Aligned_cols=443 Identities=12% Similarity=-0.017 Sum_probs=244.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHH
Q 040136 150 SLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKA 229 (681)
Q Consensus 150 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 229 (681)
..+..+...+.+.|++++|+..|+++... .|+...|..+..++.+.|++++|++.|+++++.+ +.+..++..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 34445555555556666666665555522 2455555555555555555555555555555543 1133455555555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040136 230 LCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEA 309 (681)
Q Consensus 230 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (681)
+.+.|++++|...|+.+.+.+ +++......++..+........+.+.+..+...+..|+...+..-........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----- 156 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE----- 156 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc-----
Confidence 555555555555555555543 23333333333333333333333333333322222222111111000000000
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC----------CChHHHHHHHHHHHh---cCCHHHHH
Q 040136 310 AKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS----------ANVVLLNTVINGYVI---SGRFDEAK 376 (681)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~l~~~~~~---~g~~~~a~ 376 (681)
..|+ ...+...+..... .+...+..+...+.. .|++++|+
T Consensus 157 -----------~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 209 (514)
T 2gw1_A 157 -----------NLPS----------------VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209 (514)
T ss_dssp -----------CCCC----------------HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred -----------CCch----------------hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 0111 1111111111111 123344444444443 67777777
Q ss_pred HHHHHHHHh-----CCC--------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCH
Q 040136 377 AIFYDSMLS-----VGC--------IPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQL 443 (681)
Q Consensus 377 ~~~~~~~~~-----~~~--------~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 443 (681)
. +++.+.. ... +.+...+..+...+...|++++|...++.+.+.. |+...+..+...+...|++
T Consensus 210 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 210 E-SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDS 286 (514)
T ss_dssp H-HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCC
T ss_pred H-HHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCH
Confidence 7 5555544 211 1123456666677777777777777777777663 2366677777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 040136 444 EKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITY 523 (681)
Q Consensus 444 ~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 523 (681)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++
T Consensus 287 ~~A~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 341 (514)
T 2gw1_A 287 TEYYNYFDKALKLD------------------------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY 341 (514)
T ss_dssp TTGGGHHHHHHTTC------------------------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred HHHHHHHHHHhhcC------------------------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence 77777777766642 2255667777777777777777777777777663 4466677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 040136 524 NGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL-TPD----IVTYNSLIN 598 (681)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~ 598 (681)
..+...|...|++++|...++++.+... .+...+..++..+...|++++|.+.++++.+... .++ ...+..+..
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 7777777777777777777777776532 2456677777777777777777777777765311 111 236677777
Q ss_pred HHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 599 GLCK---MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 599 ~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
++.. .|++++|...++++.+.. +.+..++..++.+|.+.|++++|...++++++ +.|+..
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 7777 777778877777777742 33466677777777777888888877777776 345543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-23 Score=218.02 Aligned_cols=453 Identities=9% Similarity=-0.062 Sum_probs=317.9
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHH
Q 040136 114 FDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLD 193 (681)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 193 (681)
...+......+.+.|++++|...|+++.+.+ |+...+..+..+|.+.|++++|+..|+++. ... +.+...|..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKAL-ELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHh-ccC-hHHHHHHHHHHH
Confidence 4567788899999999999999999999987 478999999999999999999999999998 333 566789999999
Q ss_pred HHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH
Q 040136 194 VLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSE 273 (681)
Q Consensus 194 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 273 (681)
++...|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..|+...+...............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999999999999999999863 35555566666665555555555555555554433443333322221222222222
Q ss_pred HHHHHHHHHHCCCCC---------CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCCCCCcccHHHHHHHHH
Q 040136 274 ALMLLEEMILMGCTS---------DVQTFNDVIHGLCK---VNRIHEAAKLVDRMLV-----RGFTPDDITYGVLMHGLC 336 (681)
Q Consensus 274 A~~~~~~m~~~~~~~---------~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~ 336 (681)
...+...+......+ +...+......+.. .|++++|..+++++.+ ....|+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------- 232 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL-------- 232 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH--------
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc--------
Confidence 222222222111111 13333333333333 5666666666666655 2112211100
Q ss_pred hcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 040136 337 RTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVN 416 (681)
Q Consensus 337 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~ 416 (681)
...+..++..++..+...|++++|.. +++...... |+...+..+...+...|++++|...++
T Consensus 233 ---------------~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 233 ---------------KEKLAISLEHTGIFKFLKNDPLGAHE-DIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHSSCHHHHHH-HHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred ---------------ChHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 00123456666677777777777777 666655544 337778888889999999999999999
Q ss_pred HHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040136 417 AMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFL 496 (681)
Q Consensus 417 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 496 (681)
.+.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD------------------------PENIFPYIQLACLAY 349 (514)
T ss_dssp HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC------------------------SSCSHHHHHHHHHTT
T ss_pred HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------------------------hhhHHHHHHHHHHHH
Confidence 988763 4466788888999999999999999998888763 235678888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---c
Q 040136 497 RRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS----SISCNILINGLCR---T 568 (681)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~ 568 (681)
..|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+.... ++ ...+..++..+.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999988763 557788899999999999999999999998875222 11 3488889999999 9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 569 RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAV 626 (681)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 626 (681)
|++++|.+.++++.+.. +.+..++..+..++.+.|++++|...|+++.+. .|+..
T Consensus 429 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp THHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 99999999999998853 346778889999999999999999999999985 56644
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-22 Score=211.07 Aligned_cols=430 Identities=11% Similarity=0.049 Sum_probs=265.4
Q ss_pred HhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 040136 186 RSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHAL 265 (681)
Q Consensus 186 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 265 (681)
..+..+...+.+.|++++|+..|+++++.. +.+..++..+..++.+.|++++|.+.++++.+.+ +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 445556666677777777777777777654 2256667777777777777777777777777654 45566777777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcCCHHH
Q 040136 266 SKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRG--FTPDDITYGVLMHGLCRTGRVDE 343 (681)
Q Consensus 266 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 343 (681)
...|++++|.+.|+.+ .. .|+. ....+..+...+....|...++.+.... ..+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 7777777777777532 21 1221 1122334444555566777777765431 11111222334444555666666
Q ss_pred HHHHHhhcCCCChH---HHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhc
Q 040136 344 ARALLNKIPSANVV---LLNTVINGYVI--------SGRFDEAKAIFYDSMLSVGCIPDV-------FTFNILIHGLCKQ 405 (681)
Q Consensus 344 A~~~~~~~~~~~~~---~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~ll~~~~~~ 405 (681)
+...+......+.. ....+...+.. .|++++|+. +++.+...... +. .++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~-~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD-MYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH-HHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 66665555543222 23333322222 246677777 66666543311 22 2355555666777
Q ss_pred CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCH
Q 040136 406 RRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANT 485 (681)
Q Consensus 406 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 485 (681)
|++++|...++...+. .|+...+..+...+...|++++|...++++.+.. +.+.
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------------~~~~ 310 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN------------------------PEYP 310 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC------------------------TTCH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC------------------------CCCH
Confidence 7778888888777765 3446667777777777777777777777776643 2256
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGL 565 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (681)
.++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+... .+...+..+...+
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEIL 388 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 677777777777888888888887777663 44566777777777778888888888877777632 2456777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 566 CRTRKANTALEFLRDMIHRG-----LTPDIVTYNSLINGLCKM----------GCIQEALNLFDKLQAEGIYPDAVTYNT 630 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~ 630 (681)
...|++++|.+.++++.+.. .......+..+..++... |++++|+..++++.+.. +.+..++..
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 467 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIG 467 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 77888888888877776531 011112233444556666 77888888888777752 334667777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 040136 631 LISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+..+|.+.|++++|.+.++++++
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 77778888888888888887776
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-21 Score=199.93 Aligned_cols=394 Identities=14% Similarity=0.089 Sum_probs=208.9
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 204 APNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMIL 283 (681)
Q Consensus 204 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 283 (681)
+...+.+..... +.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..++...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344444444432 2245566666666666677777777776666543 44566666666666666777777776666665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-c---ccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHH
Q 040136 284 MGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD-D---ITYGVLMHGLCRTGRVDEARALLNKIPSANVVLL 359 (681)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 359 (681)
.+ +.+..++..+...+.+.|++++|.+.++++.... |+ . ..+..++..+... .+
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-------------------~~ 146 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ-------------------RL 146 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH-------------------HH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH-------------------HH
Confidence 54 3445666666666666666666666666666542 22 1 2333333322111 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHh
Q 040136 360 NTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCK 439 (681)
Q Consensus 360 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 439 (681)
..+...+...|++++|+. +++.+.... +.+...+..+..++.+.|++++|...++.+.+.. +.+..++..+..+|..
T Consensus 147 ~~~a~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIA-FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHTCHHHHHH-HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHH-HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 122333445555555555 444444322 2244444555555555555555555555544431 2234444444555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 040136 440 EGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD 519 (681)
Q Consensus 440 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 519 (681)
.|++++|...|+++.... +.+...+..+... . .
T Consensus 224 ~g~~~~A~~~~~~~~~~~------------------------p~~~~~~~~~~~~--------------~---------~ 256 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLD------------------------QDHKRCFAHYKQV--------------K---------K 256 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHH--------------H---------H
T ss_pred cCCHHHHHHHHHHHHHhC------------------------CChHHHHHHHHHH--------------H---------H
Confidence 555555544444444321 0112222111000 0 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS-----SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYN 594 (681)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 594 (681)
...+..++..|.+.|++++|...|+++++.. |+ ...+..++.++.+.|++++|++.++++.+.. +.+...|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 0011122666777777777777777777642 33 3456677777777777777777777776641 33567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH------------HHhcC-----ChhHHHHHHHH-HHHCC
Q 040136 595 SLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISW------------HFKEG-----LFDDAFLILHK-GVANG 655 (681)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~g 655 (681)
.+..+|...|++++|+..++++.+. .|+ ...+..+..+ |...| +.+++.+.+++ .++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-- 409 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-- 409 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--
Confidence 7777777777777777777777763 444 4455555422 33334 55677777776 444
Q ss_pred CCCC----H-------HHHHHHHHHHHhcCcccc
Q 040136 656 FVPN----D-------ATWYILVRNLVKEINMES 678 (681)
Q Consensus 656 ~~~~----~-------~~~~~ll~~~~~~g~~~~ 678 (681)
..|| . ..+..+..++-..|+.+.
T Consensus 410 ~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 410 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 2232 1 356777777777776654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-21 Score=199.75 Aligned_cols=341 Identities=11% Similarity=0.041 Sum_probs=218.9
Q ss_pred HHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 167 QATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDM 246 (681)
Q Consensus 167 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 246 (681)
.+...+..+.. ..+.+...+..+...+.+.|++++|+.+|+++++.. +.+..++..+..++...|++++|...|+++
T Consensus 10 ~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYF--QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccc--ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444441 225567789999999999999999999999999864 346889999999999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 247 TKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDV---QTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTP 323 (681)
Q Consensus 247 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (681)
.+.+ +.+..++..+..+|.+.|++++|.+.|+++.+.. +.+. ..+..++..+...
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------- 144 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------- 144 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH--------------------
Confidence 9876 5678899999999999999999999999999864 3334 5666665441110
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040136 324 DDITYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIH 400 (681)
Q Consensus 324 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~ 400 (681)
.+..+...+...|++++|...|+++.. .+..++..++.+|.+.|++++|++ .++.+.... +.+..++..+..
T Consensus 145 ---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 145 ---RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS-DLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp ---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHH-HHHHHHHHH-CSCHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC-CCCHHHHHHHHH
Confidence 111122233344444444444444332 234445555555555555555555 444444322 235566677777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHH
Q 040136 401 GLCKQRRFGSALELVNAMAVKGCEPNIVTYTIL------------VDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEE 468 (681)
Q Consensus 401 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 468 (681)
.+...|++++|...++.+.... +.+...+..+ ...+.+.|++++|...|+++.+....
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------- 289 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--------- 289 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS---------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---------
Confidence 7777777777777777776542 2223333332 56677777777777777776654210
Q ss_pred HHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040136 469 ALGLYQDMLLEGVTAN--TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEM 546 (681)
Q Consensus 469 a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 546 (681)
.+. ...+..+..++.+.|++++|...++++.+.. |.+..++..++.+|...|++++|...|+++
T Consensus 290 -------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 290 -------------IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp -------------SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 000 3456667777777777777777777776652 456677777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHH
Q 040136 547 MRKGIKPSSISCNILI 562 (681)
Q Consensus 547 ~~~~~~p~~~~~~~l~ 562 (681)
++.... +...+..+.
T Consensus 356 l~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 356 QEHNEN-DQQIREGLE 370 (450)
T ss_dssp HTTSSS-CHHHHHHHH
T ss_pred HHhCcc-hHHHHHHHH
Confidence 764321 344444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-21 Score=205.44 Aligned_cols=441 Identities=11% Similarity=0.014 Sum_probs=282.9
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHH
Q 040136 114 FDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLD 193 (681)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~ 193 (681)
...+..+...+.+.|++++|...|+++.+..+ .+...+..+..+|.+.|++++|++.|+++. ... +.+...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKAL-EIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-CchHHHHHHHHH
Confidence 45566667777777777777777777777664 366677777777777777777777777766 222 445666666667
Q ss_pred HHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCh
Q 040136 194 VLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHG--CVPNSVVYQTLIHALSKSNRV 271 (681)
Q Consensus 194 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~ 271 (681)
++...|++++|+..|+ ..... |+.. ...+..+...+...+|...++.+.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~--~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLN--GDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhcC--CCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 7777777777777774 23221 2211 112233334444556666666665431 001111122333344444444
Q ss_pred hHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHH
Q 040136 272 SEALMLLEEMILMGCTSDVQ-TFNDVIHGLCKV--------NRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVD 342 (681)
Q Consensus 272 ~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 342 (681)
+.+...+...... .+... ....+...+... |++++|..+++++.+.... +...+..+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~----------- 242 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA----------- 242 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH-----------
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH-----------
Confidence 4444333322211 11111 111111111111 2444444444444433111 11111111
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040136 343 EARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKG 422 (681)
Q Consensus 343 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 422 (681)
..++..+...+...|++++|.. .++..... .|+...+..+...+...|++++|...++.+.+..
T Consensus 243 -------------~~~~~~~g~~~~~~~~~~~A~~-~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 243 -------------ALALCYTGIFHFLKNNLLDAQV-LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred -------------HHHHHHHHHHHHhcccHHHHHH-HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 1234455566777778888887 66666554 3557788888888899999999999999988764
Q ss_pred CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 423 CEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLH 502 (681)
Q Consensus 423 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 502 (681)
+.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|+++
T Consensus 307 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------------~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 307 -PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN------------------------PENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------TTCSHHHHHHHHHHHHTTCHH
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHcCCHH
Confidence 4467788899999999999999999998887753 225678888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc---------
Q 040136 503 EAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG-----IKPSSISCNILINGLCRT--------- 568 (681)
Q Consensus 503 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~--------- 568 (681)
+|...++++.+.. +.+..++..+...+...|++++|...|+++.+.. .......+......+...
T Consensus 362 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 440 (537)
T 3fp2_A 362 ESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD 440 (537)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CC
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 9999999998874 6677889999999999999999999999987742 111223345556777777
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 569 -RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 569 -g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.|+++.+.
T Consensus 441 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 441 EEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999998852 346788899999999999999999999999985
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-17 Score=169.68 Aligned_cols=362 Identities=15% Similarity=0.064 Sum_probs=253.7
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHH
Q 040136 205 PNLFYDMLSKGISPTVYTFGVVMKALCM----VNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSK----SNRVSEALM 276 (681)
Q Consensus 205 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~ 276 (681)
+..+....+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44444444433 45555555555555 566677777776666654 45566666666666 666777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCCHHHHHHHH
Q 040136 277 LLEEMILMGCTSDVQTFNDVIHGLCK----VNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCR----TGRVDEARALL 348 (681)
Q Consensus 277 ~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 348 (681)
.|++..+.| +...+..|...|.. .+++++|++.+++..+.| +...+..+..+|.. .++.++|...|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 777666644 44555556666655 566777777777666654 34455566666665 56677777777
Q ss_pred hhcCC-CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 040136 349 NKIPS-ANVVLLNTVINGYVI----SGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCK----QRRFGSALELVNAMA 419 (681)
Q Consensus 349 ~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~ 419 (681)
++..+ .++..+..|...|.. .++.++|++ +++...+.+ +...+..+...|.. .+++++|..++++..
T Consensus 175 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~-~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 175 SKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQ-WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH-HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHH-HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 66544 455666667777766 677777777 666665544 55666777777775 778888888888887
Q ss_pred hcCCCcCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 040136 420 VKGCEPNIVTYTILVDGFCK----EGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAF 495 (681)
Q Consensus 420 ~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 495 (681)
+.| +...+..+...|.. .+++++|...|++..+.+ +...+..+...|
T Consensus 251 ~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--------------------------~~~a~~~Lg~~y 301 (490)
T 2xm6_A 251 EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--------------------------NSDGQYYLAHLY 301 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--------------------------CHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--------------------------CHHHHHHHHHHH
Confidence 764 45566666666766 677777777777766543 556667777777
Q ss_pred Hhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 496 LRR-----GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG---AVDKGLGLFEEMMRKGIKPSSISCNILINGLCR 567 (681)
Q Consensus 496 ~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 567 (681)
... +++++|...+++..+.+ +...+..+...|...| ++++|..+|++..+.| +...+..+...|..
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 375 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQ 375 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 776 88999999999888875 4566777777777756 7888999999988864 67788888888888
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 040136 568 ----TRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK----MGCIQEALNLFDKLQAEG 620 (681)
Q Consensus 568 ----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 620 (681)
.+++++|.+.+++..+.+ +...+..|...|.. .++.++|...|++..+.+
T Consensus 376 g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 376 GKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 789999999999988864 56677788888887 789999999999998864
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-16 Score=168.81 Aligned_cols=547 Identities=10% Similarity=0.061 Sum_probs=339.2
Q ss_pred chhHHHHhcCCCCh-----hHH---hhhcCCCCHHHH---HHHhcCCCChHHHHHHHHHhhhCCC-CCCCHHHHHHHHHH
Q 040136 56 SENEWERLLKPFDL-----NEL---RKSLHKITPFQL---CKLLRLPLDVDTSMEIFTWAGSQEG-YCHTFDVYYVLIDK 123 (681)
Q Consensus 56 ~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~---~~~l~~~~~~~~al~~~~~~~~~~~-~~~~~~~~~~l~~~ 123 (681)
....|..++..-+. -.+ ........|.++ .+.+...+.+.+|+++++.+...+. |+.+...-..++..
T Consensus 952 d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~t 1031 (1630)
T 1xi4_A 952 DPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILT 1031 (1630)
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHH
Confidence 34678887754421 111 111244566654 3444568999999999999875433 44555666666666
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCc
Q 040136 124 LGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKV 203 (681)
Q Consensus 124 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 203 (681)
..+. +.....++.+...... ...+...+...|.+++|..+|++.. ......+.++. ..+++++
T Consensus 1032 AIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldr 1094 (1630)
T 1xi4_A 1032 AIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDR 1094 (1630)
T ss_pred HHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHH
Confidence 6665 5566666666665322 3346777788899999999998764 11222233322 6678888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 204 APNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMIL 283 (681)
Q Consensus 204 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 283 (681)
|.++.++. -+..+|..+.+++...|++++|...|.+. .|...|..++.++.+.|++++|.+.|....+
T Consensus 1095 AiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1095 AYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred HHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888754 14677888889999999999999888653 3577788888999999999999998887776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHH
Q 040136 284 MGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVI 363 (681)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 363 (681)
.. ++....+.++.+|++.+++++..... . .++...+..+...|...|++++|...|... ..|..++
T Consensus 1163 ~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA 1228 (1630)
T 1xi4_A 1163 KA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 1228 (1630)
T ss_pred hc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHH
Confidence 54 33333345888888888887544432 1 335556667888888899999999998885 4788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCH
Q 040136 364 NGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQL 443 (681)
Q Consensus 364 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 443 (681)
..|.+.|++++|++ .++.. .+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+
T Consensus 1229 ~tLvkLge~q~AIE-aarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVD-GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHhCCHHHHHH-HHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCH
Confidence 89999999999888 55433 35678888888888888888887765432 33556677888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCc-------------cccHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 444 EKANIIINEMLAKGLSLNT-------------GDRIEEALGLYQDMLLEGV----TANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 444 ~~A~~~~~~~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
++|+.+++..+........ .+++.++++.|..-..-.. --+...|..++..|.+.|+++.|..
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 9998888777654311110 4455555555554332100 0256778889999999999998873
Q ss_pred HH-------------HHHHhCCCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHC---------
Q 040136 507 LV-------------NDMLFRGCPLDEITYNGLIKALCNAG---------------AVDKGLGLFEEMMRK--------- 549 (681)
Q Consensus 507 ~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~--------- 549 (681)
.+ ++.+.. ..|+..|...+.-|...+ +++++.++|...-..
T Consensus 1377 tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~ 1454 (1630)
T 1xi4_A 1377 TMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRS 1454 (1630)
T ss_pred HHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHH
Confidence 32 222222 446667776666666555 556665555421000
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHH------------HHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHH
Q 040136 550 -GIKPSSISCNILINGLCRTRKANTALEF------------LRDMIHRGLTPDIVTYNSLING-LCKMGCIQEALNLFDK 615 (681)
Q Consensus 550 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~------------~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~ 615 (681)
....+...-..+.+.|....+++.-.+- ..++.+ -+..-+..+... |.+.|+|+.|.+++++
T Consensus 1455 vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lek----heLl~frrIAa~ly~~n~~~~~ai~l~k~ 1530 (1630)
T 1xi4_A 1455 VQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEK----HELIEFRRIAAYLFKGNNRWKQSVELCKK 1530 (1630)
T ss_pred HHHhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhh----hhHHHHHHHHHHHHHhcCcHHHHHHHHHh
Confidence 0001111112233333333332211111 111111 011112333332 3344777777777655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 040136 616 LQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEIN 675 (681)
Q Consensus 616 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 675 (681)
..- |.-.+++..+.|+.+.+.+++.-..+. -+...|-.++-.|+..-+
T Consensus 1531 d~l---------~~dAm~~a~~S~d~e~~e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~ 1578 (1630)
T 1xi4_A 1531 DSL---------YKDAMQYASESKDTELAEELLQWFLQE---EKRECFGACLFTCYDLLR 1578 (1630)
T ss_pred ccC---------HHHHHHHHHHcCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCC
Confidence 432 344566667777777777777666654 344555566666655433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-16 Score=167.10 Aligned_cols=365 Identities=12% Similarity=0.080 Sum_probs=307.8
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 040136 238 SACSLLRDMTKHGCVPNSVVYQTLIHALSK----SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCK----VNRIHEA 309 (681)
Q Consensus 238 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a 309 (681)
.+...+....+.| +...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455566665554 67888888888888 899999999999999865 67788888888888 8999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChHHHHHHHHHHHh----cCCHHHHHHHHH
Q 040136 310 AKLVDRMLVRGFTPDDITYGVLMHGLCR----TGRVDEARALLNKIPS-ANVVLLNTVINGYVI----SGRFDEAKAIFY 380 (681)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 380 (681)
.++|++..+.| +...+..|...|.. .+++++|...|++... .++..+..|...|.. .++.++|++ ++
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~-~~ 174 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMARE-WY 174 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH-HH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHH-HH
Confidence 99999998875 56677788888888 8899999999998766 567788899999987 789999999 77
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHh----cCCHHHHHHHHHH
Q 040136 381 DSMLSVGCIPDVFTFNILIHGLCK----QRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCK----EGQLEKANIIINE 452 (681)
Q Consensus 381 ~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~ 452 (681)
+...+.+ +...+..+...|.. .++.++|..++++..+.| +...+..+...|.. .+++++|...|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 7777754 67788888888887 899999999999998875 56677788888876 7788888888887
Q ss_pred HHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040136 453 MLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLR----RGSLHEAHKLVNDMLFRGCPLDEITYNGLIK 528 (681)
Q Consensus 453 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 528 (681)
..+.+ +...+..+...|.. .++.++|.+.|++..+.| +...+..+..
T Consensus 249 a~~~~--------------------------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 299 (490)
T 2xm6_A 249 SAEQG--------------------------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAH 299 (490)
T ss_dssp HHTTT--------------------------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHCC--------------------------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 77653 56677777777877 899999999999998875 5667778888
Q ss_pred HHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 529 ALCNA-----GAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTR---KANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 529 ~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
.|... +++++|..+|+++.+.| +...+..+...|...| +.++|++.+++..+.| +...+..|...|
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 373 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNAL 373 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 88887 89999999999999975 5677888888888766 7899999999999863 677888899999
Q ss_pred Hh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCC
Q 040136 601 CK----MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFK----EGLFDDAFLILHKGVANGF 656 (681)
Q Consensus 601 ~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 656 (681)
.. .+++++|+..|++..+.| +...+..|...|.+ .+++++|...|+++.+.|.
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 88 899999999999999965 67788889999988 8999999999999998663
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.4e-18 Score=168.62 Aligned_cols=326 Identities=11% Similarity=0.057 Sum_probs=230.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHH
Q 040136 289 DVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVING 365 (681)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 365 (681)
+...+..+...+...|++++|+..++++.+.. +.+..++..+..++...|++++|...++++.. .+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34556667777777888888888887777653 22455666666666667777776666665433 233444555555
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcC
Q 040136 366 YVISGRFDEAKAIFYDSMLSVGCIP----DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEG 441 (681)
Q Consensus 366 ~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 441 (681)
|...|++++|.. .++..... .| +...+..+.... . ...+..+...+...|
T Consensus 81 ~~~~~~~~~A~~-~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 81 LLKQGKLDEAED-DFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHTCHHHHHH-HHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHH-HHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHcc
Confidence 555555555555 44444332 12 111111111000 0 011223356788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 040136 442 QLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEI 521 (681)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 521 (681)
++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..
T Consensus 135 ~~~~A~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 189 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC------------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTE 189 (359)
T ss_dssp CHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHH
T ss_pred CHHHHHHHHHHHHHhC------------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 9999999998887753 2377889999999999999999999999999874 67889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCN------------ILINGLCRTRKANTALEFLRDMIHRGLTPD 589 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 589 (681)
++..+...+...|++++|...|+++.+.... +...+. .++..+...|++++|.+.++++.+.. |+
T Consensus 190 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~ 266 (359)
T 3ieg_A 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PS 266 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC
Confidence 9999999999999999999999999986432 333333 33677899999999999999999853 33
Q ss_pred -H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHH
Q 040136 590 -I----VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN-DATW 663 (681)
Q Consensus 590 -~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~ 663 (681)
. ..+..+..++...|++++|+..++++.+.. +.+..++..++.++...|++++|...++++++ +.|+ ...+
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~ 343 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIR 343 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHH
Confidence 3 235567889999999999999999999862 44688999999999999999999999999998 4565 4555
Q ss_pred HHHHHHHHh
Q 040136 664 YILVRNLVK 672 (681)
Q Consensus 664 ~~ll~~~~~ 672 (681)
..+..+...
T Consensus 344 ~~l~~~~~~ 352 (359)
T 3ieg_A 344 EGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-17 Score=166.45 Aligned_cols=327 Identities=11% Similarity=0.079 Sum_probs=249.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 040136 254 NSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMH 333 (681)
Q Consensus 254 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (681)
++..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678889999999999999999999999865 5578899999999999999999999999999763 235678899999
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 040136 334 GLCRTGRVDEARALLNKIPSANV------VLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRR 407 (681)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 407 (681)
++...|++++|...|+++...++ ..+..+...+. ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence 99999999999999998876332 22332221110 1123345566777888
Q ss_pred hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHH
Q 040136 408 FGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVT 487 (681)
Q Consensus 408 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 487 (681)
+++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------~~~~~~ 190 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK------------------------SDNTEA 190 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------------SCCHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------CCCHHH
Confidence 888888888877653 3456777778888888888888888887777653 236677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 488 YNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYN------------GLIKALCNAGAVDKGLGLFEEMMRKGIKPSS 555 (681)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 555 (681)
+..+...+...|++++|...+++..+.. +.+...+. .+...+.+.|++++|...++++.+.... +.
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 268 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VA 268 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ch
Confidence 7788888888888888888888877763 33444333 2366688899999999999999886432 22
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 040136 556 ----ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNT 630 (681)
Q Consensus 556 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 630 (681)
..+..+...+...|++++|.+.+++..+. .+.+..++..+..++...|++++|...|+++.+. .|+ ...+..
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~ 345 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREG 345 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHH
Confidence 23556788899999999999999999885 2336788899999999999999999999999985 555 555555
Q ss_pred HHHHHH
Q 040136 631 LISWHF 636 (681)
Q Consensus 631 l~~~~~ 636 (681)
+..+..
T Consensus 346 l~~~~~ 351 (359)
T 3ieg_A 346 LEKAQR 351 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-14 Score=159.17 Aligned_cols=409 Identities=13% Similarity=0.129 Sum_probs=283.8
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhH
Q 040136 111 CHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGI--ICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSY 188 (681)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 188 (681)
..+++--...++.+...|.+.+|.++++++.-.+- ..+...-+.|+.+..+. +..+..+..++.. .-+ .
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-----~~d---~ 1052 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-----NYD---A 1052 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-----hcc---H
Confidence 45666667778888888888888888888874321 13445666677777666 4455655555544 112 3
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 040136 189 NVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKS 268 (681)
Q Consensus 189 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 268 (681)
..+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhC
Confidence 4466777888889999888887421 2222233322 677888888888865 2367888888899999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 040136 269 NRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALL 348 (681)
Q Consensus 269 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 348 (681)
|++++|.+.|.+. .|...|..++..+.+.|++++|.+++....+.. ++....+.++.+|++.+++++.....
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999998888653 467778888888999999999999888877654 34444455888888888888644443
Q ss_pred hhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHh
Q 040136 349 NKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIV 428 (681)
Q Consensus 349 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 428 (681)
..++...|..+...|...|++++|.. +|... ..|..+...+++.|+++.|.+.+++.. +..
T Consensus 1191 ---~~~n~ad~~~iGd~le~eg~YeeA~~-~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~ 1251 (1630)
T 1xi4_A 1191 ---NGPNNAHIQQVGDRCYDEKMYDAAKL-LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STR 1251 (1630)
T ss_pred ---hCCCHHHHHHHHHHHHhcCCHHHHHH-HHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHH
Confidence 34566677778888888899999988 76653 378888888888899988888887662 567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 429 TYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLV 508 (681)
Q Consensus 429 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 508 (681)
+|..+..+|...|++..|....-.+ ..++..+..++..|.+.|.+++|+.++
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~I----------------------------iv~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHI----------------------------VVHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh----------------------------hcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888888887665432 226667778888888889999999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHH---
Q 040136 509 NDMLFRGCPLDEITYNGLIKALCNA--GAVDKGLGLFEEMMRKGIKP------SSISCNILINGLCRTRKANTALEF--- 577 (681)
Q Consensus 509 ~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~--- 577 (681)
+..+... +.....|.-+...|++. ++..++.++|..-.. +++ +...|.-++..|.+.|+++.|...
T Consensus 1304 E~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1304 EAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 8877654 44555666666666653 345555555553332 222 456688888888888888888732
Q ss_pred ----------HHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 578 ----------LRDMIHRGLTPDIVTYNSLINGLCK 602 (681)
Q Consensus 578 ----------~~~~~~~~~~p~~~~~~~l~~~~~~ 602 (681)
|++.+. -..|...|...+..|..
T Consensus 1381 h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1381 HPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLE 1413 (1630)
T ss_pred ccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHh
Confidence 222221 23456666666666663
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-17 Score=163.33 Aligned_cols=289 Identities=11% Similarity=0.006 Sum_probs=204.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 040136 358 LLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGF 437 (681)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 437 (681)
.+..++..+...|++++|++ +++.+.... +.+...+..++..+...|++++|..+++++.+.. +.+...+..+...+
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~-~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYK-LTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 34444444555555555555 444444332 2234455566677777888888888888877653 33566777777788
Q ss_pred HhcC-CHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 040136 438 CKEG-QLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC 516 (681)
Q Consensus 438 ~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 516 (681)
...| ++++|...|+++.+.. +.+...|..+...+...|++++|...++++.+..
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 155 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE------------------------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM- 155 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC------------------------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-
T ss_pred HHhhhhHHHHHHHHHHHHHhC------------------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-
Confidence 8888 7888888887777653 2256677788888888888888888888887763
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCC
Q 040136 517 PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG--------LTP 588 (681)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p 588 (681)
+.+...+..+...|...|++++|...++++.+... .+...+..++..+...|++++|...++++.+.. .+.
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 234 (330)
T 3hym_B 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234 (330)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTT
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccH
Confidence 44566677788888888888888888888887643 356778888888888888888888888877631 123
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 040136 589 DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVP-NDATWYILV 667 (681)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~ll 667 (681)
+..++..+..++...|++++|+..++++.+.. +.+...+..+..++.+.|++++|.+.++++++ +.| +...+..+.
T Consensus 235 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~ 311 (330)
T 3hym_B 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLG 311 (330)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHH
Confidence 35678888888888889999998888888753 33567788888888888999999998888887 445 456666666
Q ss_pred HHH-HhcCcccc
Q 040136 668 RNL-VKEINMES 678 (681)
Q Consensus 668 ~~~-~~~g~~~~ 678 (681)
.++ ...|+.+.
T Consensus 312 ~~~~~~~g~~~a 323 (330)
T 3hym_B 312 HCIEMYIGDSEA 323 (330)
T ss_dssp HHHHTTTTC---
T ss_pred HHHHHHhCchhc
Confidence 666 45566554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-16 Score=164.93 Aligned_cols=419 Identities=11% Similarity=0.081 Sum_probs=290.7
Q ss_pred CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 040136 182 QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTL 261 (681)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 261 (681)
+-+...|..++. +.+.|++++|..+|+++++.. +.+...|..++..+.+.|++++|..+|+++.... |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 457788888888 478899999999999999863 3366788899999999999999999999998874 677777777
Q ss_pred HHHH-HhcCChhHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCc
Q 040136 262 IHAL-SKSNRVSEALM----LLEEMIL-MGCTS-DVQTFNDVIHGLCK---------VNRIHEAAKLVDRMLVRGFTPDD 325 (681)
Q Consensus 262 i~~~-~~~~~~~~A~~----~~~~m~~-~~~~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~ 325 (681)
+... ...|+.+.|.+ +|++... .|..| +...|...+..... .|+++.|..+|++.+.. |..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence 7533 45677777665 6666654 24333 45677777766554 67888999999988873 322
Q ss_pred ---ccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH------HHhCC---CCCC--
Q 040136 326 ---ITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDS------MLSVG---CIPD-- 391 (681)
Q Consensus 326 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------~~~~~---~~p~-- 391 (681)
..|..........|. ..+..++.. ..+++.+|.. +++. ..+.. ++|+
T Consensus 163 ~~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~-~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARR-VAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp THHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHH-HHHHHHHHHHHCCSSSCCCCCC--
T ss_pred hHHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHH-HHHHHHHHHHHhccccccCCCCCC
Confidence 222222211111111 111111111 2234455554 3332 11111 2343
Q ss_pred ------HHHHHHHHHHHHhc----CCh----hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHh-------cCCHH------
Q 040136 392 ------VFTFNILIHGLCKQ----RRF----GSALELVNAMAVKGCEPNIVTYTILVDGFCK-------EGQLE------ 444 (681)
Q Consensus 392 ------~~~~~~ll~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~~------ 444 (681)
...|...+...... ++. ..+..+|++..... +.+...|..++..+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 23455444333221 232 36778888888762 4467788888887775 68876
Q ss_pred -HHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HH
Q 040136 445 -KANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDE-IT 522 (681)
Q Consensus 445 -~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~ 522 (681)
+|..+|++..+. -.+.+...|..++..+.+.|++++|..+|+++++.. +.+. .+
T Consensus 303 ~~A~~~~~~Al~~-----------------------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 358 (530)
T 2ooe_A 303 DEAANIYERAIST-----------------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLV 358 (530)
T ss_dssp HHHHHHHHHHTTT-----------------------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHH
T ss_pred HHHHHHHHHHHHH-----------------------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHH
Confidence 566666655431 123368889999999999999999999999999862 3343 58
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 523 YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILING-LCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC 601 (681)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 601 (681)
|..++..+.+.|++++|..+|+++.+... .+...|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 99999999999999999999999998632 233333332222 346899999999999998852 336788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 602 KMGCIQEALNLFDKLQAEG-IYPD--AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+..+.+++.+
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999863 2332 45888889989999999999999999987
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-17 Score=161.87 Aligned_cols=292 Identities=11% Similarity=0.022 Sum_probs=200.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 040136 288 SDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYV 367 (681)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 367 (681)
.+...+..++..+...|++++|.++++++.+.. +.+...+..++.++..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~------------------------------ 68 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVE------------------------------ 68 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHH------------------------------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHH------------------------------
Confidence 344445555555555566666666555555442 1123334444444444
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHH
Q 040136 368 ISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQR-RFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKA 446 (681)
Q Consensus 368 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 446 (681)
.|++++|.. +++.+.... +.+...+..+...+...| ++++|...++...+.. +.+...+..+...+...|++++|
T Consensus 69 -~~~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 69 -LNKANELFY-LSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp -HTCHHHHHH-HHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHH
T ss_pred -hhhHHHHHH-HHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHH
Confidence 445555554 344443322 234566777777777777 7888888888777653 33566777788888888888888
Q ss_pred HHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 040136 447 NIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGL 526 (681)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 526 (681)
...++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+
T Consensus 145 ~~~~~~a~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 199 (330)
T 3hym_B 145 MAAYFTAAQLM------------------------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEV 199 (330)
T ss_dssp HHHHHHHHHHT------------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHHHHHHhc------------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 88887777653 2245666678888888888888888888888773 6677888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 527 IKALCNAGAVDKGLGLFEEMMRKG--------IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
...+...|++++|...++++.+.. ......++..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 278 (330)
T 3hym_B 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGY 278 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 888888889999988888887641 13345788888888999999999999999888753 335677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCChh
Q 040136 599 GLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLISWH-FKEGLFD 642 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~~ 642 (681)
++...|++++|...++++.+. .| +...+..+..++ ...|+.+
T Consensus 279 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 279 IHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCchh
Confidence 899999999999999988874 44 566777777777 4455543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-15 Score=161.54 Aligned_cols=427 Identities=11% Similarity=0.052 Sum_probs=266.8
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
.+...+..++.. .+.|+++.|..+|+++.+..+ .+...|..++..+.+.|++++|..+|+++... .|+...|...
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHH
Confidence 466677777763 667788888888888877654 46777778888888888888888888887722 3566666666
Q ss_pred HHHH-HhcCCcCcHHH----HHHHHHHC-CCCC-ChhhHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCC-
Q 040136 192 LDVL-VAGNCHKVAPN----LFYDMLSK-GISP-TVYTFGVVMKALCM---------VNEVDSACSLLRDMTKHGCVPN- 254 (681)
Q Consensus 192 l~~~-~~~~~~~~A~~----~~~~m~~~-~~~p-~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~~- 254 (681)
+... ...|+.+.|.+ +|++.+.. |..| +...|..++..... .|+++.|..+|++..+. +.+
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~--P~~~ 163 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN--PMIN 163 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS--CCTT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc--hhhh
Confidence 6533 34567776665 55555443 4333 34455555555443 56667777777776652 111
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------HCC---CCCC
Q 040136 255 -SVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML------VRG---FTPD 324 (681)
Q Consensus 255 -~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------~~~---~~~~ 324 (681)
...|..........|. .+...++. ...+++..|..++.... +.. ++|+
T Consensus 164 ~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 1122211111000000 00011110 02233445554444321 111 1111
Q ss_pred cc-cHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHhCCCCCCHHHH
Q 040136 325 DI-TYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVIS----GRF----DEAKAIFYDSMLSVGCIPDVFTF 395 (681)
Q Consensus 325 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~p~~~~~ 395 (681)
.. .+... ...|...+...... ++. ..+.. +++..... .+-+...|
T Consensus 222 ~~~~~~~~------------------------~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~-~y~~al~~-~p~~~~~w 275 (530)
T 2ooe_A 222 NTPQEAQQ------------------------VDMWKKYIQWEKSNPLRTEDQTLITKRVMF-AYEQCLLV-LGHHPDIW 275 (530)
T ss_dssp --CCHHHH------------------------HHHHHHHHHHHHHCSSCCSCSHHHHHHHHH-HHHHHHHH-HTTCHHHH
T ss_pred CChhHHHH------------------------HHHHHHHHHHHHcCCccCCcchhHHHHHHH-HHHHHHHh-CCCCHHHH
Confidence 00 00000 11222222211111 111 24444 44444443 23466777
Q ss_pred HHHHHHHHh-------cCChh-------HHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 396 NILIHGLCK-------QRRFG-------SALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLN 461 (681)
Q Consensus 396 ~~ll~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 461 (681)
..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++..
T Consensus 276 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~---- 351 (530)
T 2ooe_A 276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE---- 351 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS----
T ss_pred HHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc----
Confidence 777777765 68877 899999998863234467888899999999999999999999998852
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHH
Q 040136 462 TGDRIEEALGLYQDMLLEGVTANT-VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKA-LCNAGAVDKG 539 (681)
Q Consensus 462 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 539 (681)
+.+. ..|...+..+.+.|+.++|.++|++..+.. +.+...+...+.. +...|+.++|
T Consensus 352 --------------------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 352 --------------------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp --------------------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred --------------------ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHH
Confidence 1132 578888888889999999999999998763 3344444433322 3468999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 540 LGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG-LTPD--IVTYNSLINGLCKMGCIQEALNLFDKL 616 (681)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (681)
..+|+++++... .+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+.+..+++++
T Consensus 411 ~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988642 367888999999999999999999999999863 2332 457888888888999999999999999
Q ss_pred HHC
Q 040136 617 QAE 619 (681)
Q Consensus 617 ~~~ 619 (681)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 885
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-17 Score=163.37 Aligned_cols=300 Identities=14% Similarity=0.036 Sum_probs=215.3
Q ss_pred hcCCHHHHHH-HHhhcCC---C----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 040136 337 RTGRVDEARA-LLNKIPS---A----NVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRF 408 (681)
Q Consensus 337 ~~g~~~~A~~-~~~~~~~---~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 408 (681)
..|++++|.. .|++... . +...+..+...+...|++++|+. +++.+.... +.+...+..+...+...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVL-LFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHH-HHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 3456666666 6664443 1 23446667777777777777777 666666543 34667778888888888888
Q ss_pred hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHH
Q 040136 409 GSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTY 488 (681)
Q Consensus 409 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 488 (681)
++|...++++.+.. +.+..++..+...|...|++++|...++++............... ... +.......+
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~ 185 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE------EGA--GGAGLGPSK 185 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH------HHh--hhhcccHHH
Confidence 88888888887764 446777888888888888888888888888776432211000000 000 000000111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDMLFRGCPL--DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
.. +..+...|++++|...++++.+.. |. +..++..+...|...|++++|...|+++++.. +.+...+..++..+.
T Consensus 186 ~~-~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 262 (368)
T 1fch_A 186 RI-LGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLA 262 (368)
T ss_dssp CT-THHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HH-HHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 12 233348899999999999998874 33 68899999999999999999999999999864 336789999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------------HHHHHHHHHH
Q 040136 567 RTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD------------AVTYNTLISW 634 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------------~~~~~~l~~~ 634 (681)
..|++++|++.++++.+.. +.+...+..+..++.+.|++++|...++++.+. .|+ ..+|..+..+
T Consensus 263 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLA 339 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHH
Confidence 9999999999999998852 346788999999999999999999999999885 222 5789999999
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 040136 635 HFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~ 653 (681)
|...|++++|..++++.++
T Consensus 340 ~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 340 LSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHTCGGGHHHHHTTCHH
T ss_pred HHHhCChHhHHHhHHHHHH
Confidence 9999999999998876553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-17 Score=163.41 Aligned_cols=254 Identities=10% Similarity=-0.071 Sum_probs=181.7
Q ss_pred CCChHHHHH-HHHHhhhCCCCCC--CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHH
Q 040136 91 PLDVDTSME-IFTWAGSQEGYCH--TFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQ 167 (681)
Q Consensus 91 ~~~~~~al~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (681)
.++++.|+. .|+.+....+-.| +...+..+...+.+.|++++|...++++.+..+ .+..++..+...|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 478888888 8887665443323 345577788889999999999999999998875 477888899999999999999
Q ss_pred HHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHH---------------HHHHHHh
Q 040136 168 ATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGV---------------VMKALCM 232 (681)
Q Consensus 168 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~---------------ll~~~~~ 232 (681)
|...|+++. ... +.+..++..+...+...|++++|...|++++..... +...+.. .+..+..
T Consensus 117 A~~~~~~al-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 117 AISALRRCL-ELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHH-hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 999999988 333 557888889999999999999999999999887532 2222221 1333337
Q ss_pred cCChhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 233 VNEVDSACSLLRDMTKHGCVP--NSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAA 310 (681)
Q Consensus 233 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 310 (681)
.|++++|...++++.+.. +. +..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|+
T Consensus 194 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 778888888888877764 22 46777778888888888888888888877653 445677777777888888888888
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhc
Q 040136 311 KLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKI 351 (681)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 351 (681)
..++++.... +.+..++..+..+|.+.|++++|...|++.
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888777652 224556666777777777777777766653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-17 Score=157.93 Aligned_cols=195 Identities=15% Similarity=0.112 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040136 151 LFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKAL 230 (681)
Q Consensus 151 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 230 (681)
+|..|+.++.+.|++++|++.|.+. +|...|..++..+...|++++|+..++..++. .++..+.+.++.+|
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHH
Confidence 4445555555555555555444321 23334444444444455555555533333332 22334444445555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 231 CMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAA 310 (681)
Q Consensus 231 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 310 (681)
.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 55555544444442 133344555555555555555555555433 23444455555555555555
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 040136 311 KLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKA 377 (681)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 377 (681)
+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|+.
T Consensus 169 ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHH
Confidence 554444 134444445555555555555544333322 222222334444455555555544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=9.8e-17 Score=157.66 Aligned_cols=290 Identities=15% Similarity=0.116 Sum_probs=129.9
Q ss_pred hCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHH
Q 040136 161 RGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSAC 240 (681)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 240 (681)
+.|+.++|.++++++. .| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~-----~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-----EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-----Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 6788999999999986 34 48999999999999999999999652 57779999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 241 SLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRG 320 (681)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 320 (681)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 4567889999999999999999988884 477789999999999999999999999976
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040136 321 FTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIH 400 (681)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~ 400 (681)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|.. .... +...+.-...++.
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~-~~l~-----L~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQM-CGLH-----IVVHADELEELIN 215 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHH-TTTT-----TTTCHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHH-HHHH-----HHhCHhhHHHHHH
Confidence 48999999999999999999999998 489999999999999999999977 3222 2233344557888
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcC
Q 040136 401 GLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEG 480 (681)
Q Consensus 401 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 480 (681)
.|.+.|.+++|..+++...... +--...|+.+.-+|++.. +++..+.++....+ + ++.. +.+..
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~ehl~~~~~~-i------ni~k---~~~~~---- 279 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSR-V------NIPK---VLRAA---- 279 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTT-S------CHHH---HHHHH----
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH-h------cCcH---HHHHH----
Confidence 9999999999999999988654 445778888888887753 33332222221111 0 0000 00000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 481 VTANTVTYNTLIHAFLRRGSLHEAHKL 507 (681)
Q Consensus 481 ~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (681)
-+...|..+...|.+.++++.|...
T Consensus 280 --~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 280 --EQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp --HTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhchHHHHHHH
Confidence 1455677777778888888877663
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-17 Score=164.58 Aligned_cols=274 Identities=10% Similarity=-0.009 Sum_probs=209.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHH
Q 040136 356 VVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVD 435 (681)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 435 (681)
...+..++..+.+.|++++|+. +++.+.... +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTIL-FMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHH-HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3457777777888888888888 666666543 3467788888999999999999999999988764 446788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040136 436 GFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRG 515 (681)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (681)
+|...|++++|...|+++.+..... .. .+ .........+..+...+...|++++|.+.++++.+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~--------~~-~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKY--------KY-LV-----KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHH--------HC-C------------------------CCHHHHHHHHHHHHHHHHS
T ss_pred HHHccccHHHHHHHHHHHHHhCccc--------hH-HH-----hhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 9999999999999998887752110 00 00 0000123345566888999999999999999999874
Q ss_pred CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040136 516 CPL--DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTY 593 (681)
Q Consensus 516 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 593 (681)
+. +..++..+...|...|++++|+..|+++++... .+..++..++.+|...|++++|++.++++++.. +.+..++
T Consensus 208 -p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 284 (365)
T 4eqf_A 208 -GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSR 284 (365)
T ss_dssp -CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHH
Confidence 44 788999999999999999999999999998743 368899999999999999999999999999852 3357889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 594 NSLINGLCKMGCIQEALNLFDKLQAEGIYP-------------DAVTYNTLISWHFKEGLFDDAFLILHKG 651 (681)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 651 (681)
..+..+|...|++++|+..|+++.+. .| +..+|..+..++...|+.+.|..+.++.
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999999999999999999999885 22 2568899999999999999888876653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=160.48 Aligned_cols=257 Identities=11% Similarity=0.013 Sum_probs=211.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEAL 470 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~ 470 (681)
+...+..+...+.+.|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|+++.+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 129 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ------------- 129 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------
Confidence 44557888899999999999999999999874 4578899999999999999999999999988763
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------HHHHHHHHHHHHcCCHHHHH
Q 040136 471 GLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDE----------ITYNGLIKALCNAGAVDKGL 540 (681)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~ 540 (681)
+.+..++..+..+|...|++++|...++++.+.. +.+. ..+..+...+...|++++|.
T Consensus 130 -----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (365)
T 4eqf_A 130 -----------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK 197 (365)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHH
Confidence 2368899999999999999999999999998763 2222 23344578899999999999
Q ss_pred HHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 541 GLFEEMMRKGIK-PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 541 ~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
..|+++.+.... .+..++..++..|...|++++|++.++++.+. .+.+..+|..+..+|...|++++|+..++++.+.
T Consensus 198 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999987432 26889999999999999999999999999986 2446889999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCccc
Q 040136 620 GIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN-------------DATWYILVRNLVKEINME 677 (681)
Q Consensus 620 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-------------~~~~~~ll~~~~~~g~~~ 677 (681)
. +.+..++..+..+|.+.|++++|...++++++. .|+ ...|..+..++...|+.+
T Consensus 277 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 277 Q-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred C-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 2 335788999999999999999999999999973 232 577888888888888654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-15 Score=155.00 Aligned_cols=366 Identities=11% Similarity=0.011 Sum_probs=192.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-
Q 040136 220 VYTFGVVMKALCMVNEVDSACSLLRDMTKH--------GCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILM-----G- 285 (681)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~- 285 (681)
...|+.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666677777777777777665431 11223455666666666677777776666665431 0
Q ss_pred -CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHH
Q 040136 286 -CTSDVQTFNDVIHGLCK--VNRIHEAAKLVDRMLVRGFTPD-DITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNT 361 (681)
Q Consensus 286 -~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 361 (681)
......++..+..++.. .+++++|+..|++.++.. |+ ...+..+..++..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~------------------------ 184 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYR------------------------ 184 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHH------------------------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH------------------------
Confidence 01123344443333333 234666666666665542 22 2222222222111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 040136 362 VINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCK----QRRFGSALELVNAMAVKGCEPNIVTYTILVDGF 437 (681)
Q Consensus 362 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 437 (681)
+...++.++|++ .++...+.. +.+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|
T Consensus 185 ----l~~~~~~~~al~-~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~ 257 (472)
T 4g1t_A 185 ----LDNWPPSQNAID-PLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFY 257 (472)
T ss_dssp ----HHHSCCCCCTHH-HHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred ----hcCchHHHHHHH-HHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHH
Confidence 122233344444 333222221 1133333333322222 344555555555555442 23444555555556
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-------------------hc
Q 040136 438 CKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFL-------------------RR 498 (681)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------------------~~ 498 (681)
...|++++|...++++.+..+. +..++..+..+|. ..
T Consensus 258 ~~~~~~~~A~~~~~~al~~~p~------------------------~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~ 313 (472)
T 4g1t_A 258 RRKDEPDKAIELLKKALEYIPN------------------------NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT------------------------CHHHHHHHHHHHHHHHHHHHHC------CHHHHH
T ss_pred HHcCchHHHHHHHHHHHHhCCC------------------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6666666666655555543211 2222322222221 12
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHH
Q 040136 499 GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS--ISCNILIN-GLCRTRKANTAL 575 (681)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~ 575 (681)
+..+.|...++...+.. +.+..++..+...|...|++++|+..|+++++....+.. ..+..+.. .....|+.++|+
T Consensus 314 ~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 314 ELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred hhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 34677888888887763 556677888999999999999999999999886443322 12233332 235678999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 576 EFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANG 655 (681)
Q Consensus 576 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 655 (681)
..+++.++ +.|+...... ....+.+++++.++.+ +.+..+|..+..+|...|++++|++.|+++++.|
T Consensus 393 ~~y~kal~--i~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 393 HHFIEGVK--INQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHH--SCCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHh--cCcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999988 4555433222 2344556666666653 4467889999999999999999999999999854
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.5e-16 Score=151.75 Aligned_cols=276 Identities=11% Similarity=-0.005 Sum_probs=198.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHH
Q 040136 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFC 438 (681)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 438 (681)
+..++..+...|++++|+. +++.+.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAAL-AFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHH-HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3444445555555555555 444444432 2356666777777777788888888777777653 335667777777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHH-HH-HHHhcCCHHHHHHHHHHHHhCCC
Q 040136 439 KEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTL-IH-AFLRRGSLHEAHKLVNDMLFRGC 516 (681)
Q Consensus 439 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~~~~~~~~~~~ 516 (681)
..|++++|...++++.+........... .. ...|+......+ .. .+...|++++|.+.++++.+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 168 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSV------NL-----QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN- 168 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC-------------------------------CCTTSHHHHHHHHHHHHHHHHHS-
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHH------Hh-----HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-
Confidence 8888888888887777653221100000 00 000011111122 22 3678889999999999998874
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 517 PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSL 596 (681)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 596 (681)
+.+..++..+...|...|++++|...++++.+... .+...+..++..+...|++++|.+.++++.+.. +.+...+..+
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 246 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNM 246 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 56888999999999999999999999999998743 367889999999999999999999999998852 3467889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 597 INGLCKMGCIQEALNLFDKLQAEGIYPD-------------AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..++...|++++|...++++.+. .|+ ..++..+..++.+.|++++|..++++.++
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999885 343 67888999999999999999999876654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-15 Score=145.88 Aligned_cols=272 Identities=11% Similarity=0.106 Sum_probs=156.4
Q ss_pred HHhcCCHHHHHHHHhhcCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 040136 335 LCRTGRVDEARALLNKIPSANV----VLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGS 410 (681)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 410 (681)
....|++..|+..++++...++ .....+..+|...|++++|+. -++. ..+|+..++..+...+...++.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~-~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLD-EIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHH-HSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHH-Hhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445555555555555444221 123344556666666666655 2221 234455566666666666667777
Q ss_pred HHHHHHHHHhcCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHH
Q 040136 411 ALELVNAMAVKGCEP-NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYN 489 (681)
Q Consensus 411 A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 489 (681)
|.+.++++...+..| +...+..+...+.+.|++++|...+++ +.+...+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----------------------------~~~~~~~~ 134 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----------------------------GDSLECMA 134 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----------------------------CCSHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----------------------------CCCHHHHH
Confidence 777777666554333 444555555666677777777766654 12556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITY--NGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR 567 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 567 (681)
.++..+.+.|++++|.+.++++.+.. |.+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 66677777777777777777766653 2221111 112233334466777777777777653 3366667777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 040136 568 TRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQE-ALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFL 646 (681)
Q Consensus 568 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 646 (681)
.|++++|.+.+++.++.. +-+..++..++..+...|+.++ +.++++++.+. .|+... +.+...+.+.++++..
T Consensus 213 ~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHH
Confidence 777777777777766642 2355666677777777777654 45677777663 454332 2234555556666554
Q ss_pred HH
Q 040136 647 IL 648 (681)
Q Consensus 647 ~~ 648 (681)
-|
T Consensus 287 ~~ 288 (291)
T 3mkr_A 287 QY 288 (291)
T ss_dssp HH
T ss_pred Hc
Confidence 43
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-15 Score=144.56 Aligned_cols=258 Identities=10% Similarity=0.093 Sum_probs=206.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcC
Q 040136 364 NGYVISGRFDEAKAIFYDSMLSVGCIPDV--FTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEG 441 (681)
Q Consensus 364 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 441 (681)
+-....|++.+|+. ..+.... ..|+. .....+.++|...|+++.|...++. .-+|+..++..+...+...+
T Consensus 7 ~~~~~~g~y~~ai~-~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 7 KNAFYIGSYQQCIN-EAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHTTCHHHHHH-HHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHH-HHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 44667899999999 6554433 23333 3456678899999999999986654 23567788888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 040136 442 QLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEI 521 (681)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 521 (681)
+.++|.+.++++...+.. +.+...+..+..++...|++++|++.+++ +.+..
T Consensus 80 ~~~~A~~~l~~ll~~~~~----------------------P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~ 131 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVD----------------------VTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLE 131 (291)
T ss_dssp THHHHHHHHHHHHHSCCC----------------------CSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHH
T ss_pred cHHHHHHHHHHHHhcccC----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHH
Confidence 999999999988775321 22667778888999999999999999987 56888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISC---NILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
.+..++..|.+.|++++|...|+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~ 208 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAA 208 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHH
Confidence 99999999999999999999999999874 443221 22334445569999999999999987 4568889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCCHHH
Q 040136 599 GLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDD-AFLILHKGVANGFVPNDAT 662 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~~~~~~ 662 (681)
++.+.|++++|+..++++++.. +-+..++..++..+...|+.++ +.++++++++ +.|+...
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~ 270 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF 270 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence 9999999999999999999862 3367789999999999999976 5789999998 5576544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=175.17 Aligned_cols=153 Identities=13% Similarity=0.099 Sum_probs=127.6
Q ss_pred CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 040136 182 QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLS---KGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVY 258 (681)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 258 (681)
..-..+||++|++|++.|+.++|.++|.+|.+ .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 44567899999999999999999999988764 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------cccHHHH
Q 040136 259 QTLIHALSKSNRV-SEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD------DITYGVL 331 (681)
Q Consensus 259 ~~li~~~~~~~~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 331 (681)
|++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++.++++ ..++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999985 78999999999999999999999988765443 444444444 3344444 4555667
Q ss_pred HHHHHhcC
Q 040136 332 MHGLCRTG 339 (681)
Q Consensus 332 ~~~~~~~g 339 (681)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 77777655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-15 Score=149.46 Aligned_cols=262 Identities=10% Similarity=-0.023 Sum_probs=182.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040136 328 YGVLMHGLCRTGRVDEARALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCK 404 (681)
Q Consensus 328 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 404 (681)
+..+...+...|++++|..+|+++.. .+...+..++..+...|++++|.+ .++...... +.+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAII-ALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 33344444444444444444444332 233444555555555555555555 444444432 3356667777777777
Q ss_pred cCChhHHHHHHHHHHhcCCCcCHhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHH
Q 040136 405 QRRFGSALELVNAMAVKGCEPNIVTYTIL--------------VD-GFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEA 469 (681)
Q Consensus 405 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a 469 (681)
.|++++|...++.+.+.. +.+...+..+ .. .+...|++++|...++++.+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------ 168 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN------------ 168 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS------------
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC------------
Confidence 888888888877777652 2222233332 11 2555566666666666665542
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 470 LGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
+.+...+..+...|...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 169 ------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 169 ------------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 2377889999999999999999999999998874 667889999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 550 GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP-----------DIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 550 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.. .+...+..+...+...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++..+
T Consensus 236 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 NP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred CC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 43 367889999999999999999999999998752221 467889999999999999999999876544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-14 Score=148.90 Aligned_cols=387 Identities=12% Similarity=-0.060 Sum_probs=237.3
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhh---c
Q 040136 111 CHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEE--------GIICRESLFILIMKYYGRGGVPGQATRLLLDMKSV---Y 179 (681)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 179 (681)
......|+.+..++...|++++|.+.|++..+. ..+....+|..+..+|...|++++|...++++..- .
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567888888999999999999999887552 11223457788899999999999999988876521 1
Q ss_pred CC---CCCHHhHHHHHHHHHh--cCCcCcHHHHHHHHHHCCCCCChhhHHHHHHH---HHhcCChhHHHHHHHHHHhCCC
Q 040136 180 GC---QPTFRSYNVVLDVLVA--GNCHKVAPNLFYDMLSKGISPTVYTFGVVMKA---LCMVNEVDSACSLLRDMTKHGC 251 (681)
Q Consensus 180 ~~---~~~~~~~~~ll~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~~ 251 (681)
.. .....++..+..++.. .+++++|+..|++.++.... +...+..+..+ +...++.++|++.+++..+.+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 11 1234556555555554 35688999999998886422 34444444444 345677888999998888765
Q ss_pred CCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc
Q 040136 252 VPNSVVYQTLIHALSK----SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDIT 327 (681)
Q Consensus 252 ~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (681)
+.+..++..+...+.. .|+.++|.+.+++..... +.+...+..+...+...|++++|...++++.+.. +-+..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 4556666666555544 467788999999888764 5567788888999999999999999999988763 224556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 040136 328 YGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRR 407 (681)
Q Consensus 328 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 407 (681)
+..+..+|...+....+... ..........+..++|.. .++...... +.+...+..+...+...|+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~-~~~~a~~~~-~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRE------------NGMYGKRKLLELIGHAVA-HLKKADEAN-DNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHH-HHHHHHHHC-TTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhhHHH------------HHHHHHHHHHhhHHHHHH-HHHHHhhcC-CchhhhhhhHHHHHHHhcc
Confidence 66666665432211111100 000001111233456666 555544433 2345567788889999999
Q ss_pred hhHHHHHHHHHHhcCCCcCH--hhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCC
Q 040136 408 FGSALELVNAMAVKGCEPNI--VTYTILVD-GFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTAN 484 (681)
Q Consensus 408 ~~~A~~~~~~~~~~~~~~~~--~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 484 (681)
+++|...|++..+....+.. ..+..+.. .....|++++|+..|.+.++.. |+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~-------------------------~~ 404 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN-------------------------QK 404 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC-------------------------CC
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------------------cc
Confidence 99999999998876433221 12223332 2346788888888888877753 22
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
..... +....+.++++..+... |.+..+|..+..+|...|++++|+..|+++++.+
T Consensus 405 ~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 405 SREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp CHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred cHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 22111 11233445555555543 6677788888888888888999999998888764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-17 Score=172.94 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMR---KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNS 595 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 595 (681)
-..+|++||++||+.|++++|..+|++|.+ .|..||.+|||+||++||+.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 344566666666666666666666555442 25556666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 596 LINGLCKMGC-IQEALNLFDKLQAEGIYPDAVTYNTLISWHFK 637 (681)
Q Consensus 596 l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 637 (681)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666665555 34555666666666666666666655544433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-14 Score=147.74 Aligned_cols=372 Identities=12% Similarity=0.045 Sum_probs=184.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 228 KALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRV---SEALMLLEEMILMGCTSDVQTFNDVIHGLCKVN 304 (681)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 304 (681)
..+.+.|++++|.++|++..+.| +..++..+...|...|+. ++|.+.|++..+. +...+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 33344455555555555544433 222333333444444444 4555555544432 2233333333232222
Q ss_pred -----CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHH---HHHHHhhcCC-CChHHHHHHHHHHHhcCCHHHH
Q 040136 305 -----RIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDE---ARALLNKIPS-ANVVLLNTVINGYVISGRFDEA 375 (681)
Q Consensus 305 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 375 (681)
++++|+.++++..+.|. ...+..|...|...+..+. +.+.+.+... .++..+..|...|...+.++++
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 44555555555554432 2244444444444333222 2222222211 3344555555555555544443
Q ss_pred HHH---HHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhc----CCHHH
Q 040136 376 KAI---FYDSMLSVGCIPDVFTFNILIHGLCKQR---RFGSALELVNAMAVKGCEPNIVTYTILVDGFCKE----GQLEK 445 (681)
Q Consensus 376 ~~~---~~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~ 445 (681)
.+. +++.... .+...+..+...|...| +.++|...|+...+.| +++...+..+...|... +++++
T Consensus 161 ~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 161 LDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 331 2222221 12225666666676677 7777777777777765 33444445555555433 46666
Q ss_pred HHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 040136 446 ANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHA-F--LRRGSLHEAHKLVNDMLFRGCPLDEIT 522 (681)
Q Consensus 446 A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~ 522 (681)
|...|++.. .+ +...+..+... + ...+++++|.+.|++..+.| +...
T Consensus 236 A~~~~~~aa-~g--------------------------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A 285 (452)
T 3e4b_A 236 AQALLEKIA-PG--------------------------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA 285 (452)
T ss_dssp HHHHHHHHG-GG--------------------------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHc-CC--------------------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 666665554 22 45555556555 3 45677888888888877765 5566
Q ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040136 523 YNGLIKALCNAG-----AVDKGLGLFEEMMRKGIKPSSISCNILINGLCR----TRKANTALEFLRDMIHRGLTPDIVTY 593 (681)
Q Consensus 523 ~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~ 593 (681)
+..|...|. .| ++++|..+|++.. .| +...+..|...|.. ..+.++|.+.|++..+.|. ....
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~ 357 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSAD 357 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHH
Confidence 666666666 44 7888888887777 33 56666667766655 3377888888888777653 2334
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 594 NSLINGLCK----MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 594 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..|...|.. ..+.++|...|+...+.| .++.......+......++..+|..+.++..+
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 455555553 347788888888887766 22322222222222233455566666665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-14 Score=147.69 Aligned_cols=280 Identities=13% Similarity=0.018 Sum_probs=154.6
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh---HHHHHHHHHcHhhcCCCCCHHhHHHHHHHHH
Q 040136 120 LIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVP---GQATRLLLDMKSVYGCQPTFRSYNVVLDVLV 196 (681)
Q Consensus 120 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 196 (681)
+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|..+|++.. . .++..+..+...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~-~----~~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAA-D----TSPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH-h----CCHHHHHHHHHHHH
Confidence 5566677888888888888887776 344556666667777777 78888888877 2 25566666666555
Q ss_pred hcC-----CcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 040136 197 AGN-----CHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVD---SACSLLRDMTKHGCVPNSVVYQTLIHALSKS 268 (681)
Q Consensus 197 ~~~-----~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 268 (681)
..+ ++++|+..|++..+.|. ...+..|...|...+..+ ++.+.+......| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 554 56788888888888663 236666777766655433 3455555555444 356677777778777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc----CCH
Q 040136 269 NRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVN---RIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRT----GRV 341 (681)
Q Consensus 269 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~ 341 (681)
+.++++.+....+.+.....+...+..|...+...| +.++|++.|++..+.|.. +...+..+..+|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 766555554333332222233447777777787888 888888888888877632 444445566666544 577
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----ChhHHHH
Q 040136 342 DEARALLNKIPSANVVLLNTVING-Y--VISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQR-----RFGSALE 413 (681)
Q Consensus 342 ~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-----~~~~A~~ 413 (681)
++|...|++....++..+..|... | ...++.++|++ +++...+.| +...+..+...|. .| ++++|..
T Consensus 234 ~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~-~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 234 KTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMK-YLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHH-HHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 777777766553344455555554 2 34556666666 444444443 4444444444444 33 5555555
Q ss_pred HHHHHH
Q 040136 414 LVNAMA 419 (681)
Q Consensus 414 ~~~~~~ 419 (681)
+|++..
T Consensus 309 ~~~~Aa 314 (452)
T 3e4b_A 309 HFEKAV 314 (452)
T ss_dssp HHHTTT
T ss_pred HHHHHh
Confidence 555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-14 Score=131.13 Aligned_cols=200 Identities=15% Similarity=0.043 Sum_probs=132.1
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 424 EPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHE 503 (681)
Q Consensus 424 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 503 (681)
+++...+..+...+.+.|++++|...|++.++.. +.+...+..+..++.+.|++++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------p~~~~a~~~lg~~~~~~g~~~~ 57 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN------------------------PQDPEALYWLARTQLKLGLVNP 57 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS------------------------SSCHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHcCCHHH
Confidence 3455566666666777777777777776666543 2256666677777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040136 504 AHKLVNDMLFRGCPLDEITYNGLIKALCNA-----------GAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKAN 572 (681)
Q Consensus 504 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 572 (681)
|+..+++.++.. |.+...+..+..++... |++++|+..|+++++..+. +...+..+..++...|+++
T Consensus 58 A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 58 ALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChH
Confidence 777777776663 55666777777777777 8888888888888776432 5677777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 573 TALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 573 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
+|+..+++.++.. .+...+..+..++...|++++|+..++++.+.. +.+...+..+..++...|++++|...+++..
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888765 577777788888888888888888888888752 3346677778888888888888888777664
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.4e-14 Score=132.72 Aligned_cols=241 Identities=15% Similarity=0.102 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHH
Q 040136 392 VFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALG 471 (681)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 471 (681)
...+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...++++.+....
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------ 70 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE------------ 70 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc------------
Confidence 3456677778888888888888888888776 67778888888899999999998888887664210
Q ss_pred HHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040136 472 LYQDMLLEGVTAN----TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMM 547 (681)
Q Consensus 472 ~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (681)
..++ ..++..+..+|...|++++|...++++... .|+. ..+...|++++|...++++.
T Consensus 71 ---------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~ 132 (258)
T 3uq3_A 71 ---------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEA 132 (258)
T ss_dssp ---------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHH
Confidence 0011 578889999999999999999999999986 3443 44667788999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 548 RKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 548 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
.... .+...+..++..+...|++++|.+.++++.+.. +.+...+..+..++...|++++|+..++++.+.. +.+...
T Consensus 133 ~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~ 209 (258)
T 3uq3_A 133 YVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRA 209 (258)
T ss_dssp HCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHH
Confidence 8632 256778899999999999999999999999863 3467889999999999999999999999999863 445788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVANG----FVPNDATWYILV 667 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~~~~~~~~~ll 667 (681)
+..+..++.+.|++++|...++++++.. ..|+.......+
T Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 210 YIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 9999999999999999999999999732 116655444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-13 Score=128.82 Aligned_cols=225 Identities=13% Similarity=0.128 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--cC----HhhH
Q 040136 357 VLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCE--PN----IVTY 430 (681)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~ 430 (681)
..+..+...+...|++++|+. +++...+.. .+...+..+...+...|++++|...++...+.... ++ ...+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~-~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIE-HYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH-HHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHH-HHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 456777888888888888888 666666655 67888999999999999999999999998875211 11 5788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 431 TILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVND 510 (681)
Q Consensus 431 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 510 (681)
..+...+...|++++|...|+++.+.. |+. ..+...|++++|...++.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------------------~~~-------~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH-------------------------RTA-------DILTKLRNAEKELKKAEA 130 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------CCH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-------------------------chh-------HHHHHHhHHHHHHHHHHH
Confidence 899999999999999999999888752 332 346677889999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 511 MLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI 590 (681)
Q Consensus 511 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 590 (681)
+.... +.+...+..+...+...|++++|...|+++.+... .+...+..++..+...|++++|++.+++.++.. +.+.
T Consensus 131 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~ 207 (258)
T 3uq3_A 131 EAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFV 207 (258)
T ss_dssp HHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHH
Confidence 98873 55777888999999999999999999999998743 367889999999999999999999999999863 3457
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
..|..+..++...|++++|...++++.+.
T Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 208 RAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88999999999999999999999999885
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-13 Score=126.85 Aligned_cols=201 Identities=15% Similarity=0.026 Sum_probs=155.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHH
Q 040136 389 IPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEE 468 (681)
Q Consensus 389 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 468 (681)
+++...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...|++.++..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 69 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART----------- 69 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------
Confidence 3456677777788888888888888888887763 4467778888888888888888888888877753
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 040136 469 ALGLYQDMLLEGVTANTVTYNTLIHAFLRR-----------GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVD 537 (681)
Q Consensus 469 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 537 (681)
+.+...+..+..++... |++++|+..+++.++.. |.+...+..+..+|...|+++
T Consensus 70 -------------P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 70 -------------PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred -------------CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChH
Confidence 22667778888888888 99999999999999874 667889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 538 KGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 538 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
+|+..|+++++.. .+...+..+..+|...|++++|+..+++.++.. +.+...+..+..++...|++++|+..+++..
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999987 688999999999999999999999999999852 3367888899999999999999999998775
Q ss_pred H
Q 040136 618 A 618 (681)
Q Consensus 618 ~ 618 (681)
.
T Consensus 213 ~ 213 (217)
T 2pl2_A 213 H 213 (217)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-12 Score=121.54 Aligned_cols=224 Identities=14% Similarity=0.014 Sum_probs=174.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCccccH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCK----EGQLEKANIIINEMLAKGLSLNTGDRI 466 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 466 (681)
+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 45566666777777778888888887777632 45566777777777 777887777777766642
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 040136 467 EEALGLYQDMLLEGVTANTVTYNTLIHAFLR----RGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN----AGAVDK 538 (681)
Q Consensus 467 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 538 (681)
+...+..+...|.. .+++++|++.+++..+.+ +...+..+...|.. .+++++
T Consensus 73 -----------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 73 -----------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp -----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred -----------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHH
Confidence 66677777778888 888888888888888764 66778888888888 888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 040136 539 GLGLFEEMMRKGIKPSSISCNILINGLCR----TRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK----MGCIQEAL 610 (681)
Q Consensus 539 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 610 (681)
|...|+++.+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+...|.. .+++++|+
T Consensus 133 A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~ 206 (273)
T 1ouv_A 133 AVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEAL 206 (273)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 888888888865 56677778888877 888899999988888753 45677778888888 88999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 040136 611 NLFDKLQAEGIYPDAVTYNTLISWHFK----EGLFDDAFLILHKGVANG 655 (681)
Q Consensus 611 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 655 (681)
..+++..+.+ +...+..+...|.+ .+++++|.+.++++.+.|
T Consensus 207 ~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 207 ARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9999888854 36677788888888 888999999999988855
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=7.4e-13 Score=125.36 Aligned_cols=210 Identities=14% Similarity=0.027 Sum_probs=170.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 427 IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 427 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------~~~~~~~~~la~~~~~~~~~~~A~~ 92 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------PSSADAHAALAVVFQTEMEPKLADE 92 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------CChHHHHHHHHHHHHHcCCHHHHHH
Confidence 4567777788888888888888888877653 2367788888889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 507 LVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP-SSISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
.++++.+.. +.+...+..+...|...|++++|..+++++.+.+..| +...+..++..+...|++++|.+.++++.+..
T Consensus 93 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 93 EYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999988774 5578888889999999999999999999998733334 45778888889999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 586 LTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYI 665 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 665 (681)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++.+. .|+......
T Consensus 172 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 247 (252)
T 2ho1_A 172 -RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQE 247 (252)
T ss_dssp -SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHH
T ss_pred -cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 3357788889999999999999999999998752 445777888888999999999999999999884 465554443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.6e-11 Score=124.72 Aligned_cols=457 Identities=11% Similarity=0.047 Sum_probs=283.9
Q ss_pred ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---hhHHH
Q 040136 164 VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNE---VDSAC 240 (681)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---~~~A~ 240 (681)
...+.+..|++.... . +.|...|..++..+.+.+.++.+..+|++++.. .+.....|...+..-.+.|+ .+.+.
T Consensus 47 ~~~d~i~~lE~~l~~-n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEE-Q-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHH-C-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 344555555555522 2 678889999999988889999999999999887 34466778888888888888 99999
Q ss_pred HHHHHHHhCC-CCCChhhHHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHH-------
Q 040136 241 SLLRDMTKHG-CVPNSVVYQTLIHALSKSNRV--------SEALMLLEEMIL-MGC-TSD-VQTFNDVIHGLC------- 301 (681)
Q Consensus 241 ~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~--------~~A~~~~~~m~~-~~~-~~~-~~~~~~li~~~~------- 301 (681)
.+|+...... .+|++..|...+....+.++. +.+.++|+..+. .|. .++ ...|...+....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999988763 137888888888776665543 234467776554 455 443 466777665433
Q ss_pred --hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 302 --KVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIF 379 (681)
Q Consensus 302 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 379 (681)
..++.+.+..+|++++......-..+|......-...+. ..+..++.+. ...++.|.. .
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------------~~~y~~Ar~-~ 264 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------------SAQYMNARS-L 264 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------------HHHHHHHHH-H
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------------hHHHHHHHH-H
Confidence 234567788888888742111111222211111101011 0111111110 011222222 2
Q ss_pred HHHHHh--CCC----C-----------C-----C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHhcCCCcCH
Q 040136 380 YDSMLS--VGC----I-----------P-----D---VFTFNILIHGLCKQR-------RFGSALELVNAMAVKGCEPNI 427 (681)
Q Consensus 380 ~~~~~~--~~~----~-----------p-----~---~~~~~~ll~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~ 427 (681)
+..+.. .++ + | + ...|...+..--..+ ....+..+|++.+.. ++-..
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 221110 010 0 1 0 123444443322222 123345667777665 24467
Q ss_pred hhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 428 VTYTILVDGFCKEGQLEKAN-IIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 428 ~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
..|...+..+...|+.++|. .+|+..... .+.+...|...+...-+.|++++|.+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~------------------------~P~s~~Lwl~~a~~ee~~~~~e~aR~ 399 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC------------------------IPNSAVLAFSLSEQYELNTKIPEIET 399 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH------------------------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh------------------------CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 77777777777778877775 777776654 23356667778888888899999999
Q ss_pred HHHHHHhCC----------CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 507 LVNDMLFRG----------CPL-----------DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGL 565 (681)
Q Consensus 507 ~~~~~~~~~----------~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (681)
+|+.++... .|. ...+|...+....+.|+.+.|..+|.++++.-.......|...+..-
T Consensus 400 iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 400 TILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 998887641 121 23467777777778889999999999998761112234443333333
Q ss_pred Hhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChh
Q 040136 566 CRT-RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP--DAVTYNTLISWHFKEGLFD 642 (681)
Q Consensus 566 ~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 642 (681)
.+. ++.+.|.++|+..++. .+-+...|...++.....|+.+.|..+|++++.....+ ....|...+..-.+.|+.+
T Consensus 480 ~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 480 YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 344 4589999999998886 44466777788888888899999999999998863211 3457888888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 643 DAFLILHKGVANGFVPNDATWYILVRNL 670 (681)
Q Consensus 643 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 670 (681)
.+.++.+++.+. .|+......+.+.|
T Consensus 559 ~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 559 SVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 999999999983 46555545554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.5e-13 Score=126.55 Aligned_cols=242 Identities=12% Similarity=0.018 Sum_probs=168.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHH
Q 040136 394 TFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLY 473 (681)
Q Consensus 394 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~ 473 (681)
.+......+...|++++|...+++..+.. +.+...+..+..+|...|++++|...++++.+....
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------- 69 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA-------------- 69 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCT--------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCc--------------
Confidence 34455666777788888888887777653 234557777777788888888888777777663210
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 040136 474 QDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP 553 (681)
Q Consensus 474 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 553 (681)
.......|..+...+...|++++|.+.+++..+.. +.+..++..+...|...|++++|...|+++++.. +.
T Consensus 70 -------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~ 140 (272)
T 3u4t_A 70 -------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TT 140 (272)
T ss_dssp -------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CC
T ss_pred -------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CC
Confidence 11134457777788888888888888888877763 5566778888888888888888888888887763 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC-----
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC---IQEALNLFDKLQAEG-IYPD----- 624 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~----- 624 (681)
+...+..+...+...+++++|.+.++++.+.. +.+...+..+..++...|+ +++|+..++++.+.. -.|+
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 219 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHH
Confidence 55666666634444558888888888888752 2346667777777777777 777888888877641 1133
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 040136 625 -AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDAT 662 (681)
Q Consensus 625 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 662 (681)
..+|..+...|...|++++|.+.++++++ +.|+...
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 256 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILA--LDPTNKK 256 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHH
Confidence 24677788888888888888888888887 4455433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-12 Score=120.75 Aligned_cols=210 Identities=13% Similarity=0.037 Sum_probs=134.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAH 505 (681)
Q Consensus 426 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (681)
+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~A~ 62 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------PKNELAWLVRAEIYQYLKVNDKAQ 62 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------ccchHHHHHHHHHHHHcCChHHHH
Confidence 34455566666666666666666666665542 124556666666677777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 506 KLVNDMLFRGCPLDEITYNGLIKALCNA-GAVDKGLGLFEEMMRKGIKPS-SISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
+.++++.+.. +.+..++..+...+... |++++|...++++.+.+..|+ ...+..++..+...|++++|++.++++.+
T Consensus 63 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 63 ESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777766653 44566666677777777 777777777777766222222 45666677777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 040136 584 RGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIY-PDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDAT 662 (681)
Q Consensus 584 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 662 (681)
.. +.+...+..+..++...|++++|...++++.+.. + .+...+..+...+...|+.++|..+++.+.+ ..|+...
T Consensus 142 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~ 217 (225)
T 2vq2_A 142 AQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEE 217 (225)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred hC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHH
Confidence 42 2245667777777777777777777777777642 2 3555666666667777777777777777765 2355444
Q ss_pred HH
Q 040136 663 WY 664 (681)
Q Consensus 663 ~~ 664 (681)
..
T Consensus 218 ~~ 219 (225)
T 2vq2_A 218 LQ 219 (225)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-11 Score=118.40 Aligned_cols=224 Identities=12% Similarity=-0.021 Sum_probs=185.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCcCHhhH
Q 040136 355 NVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCK----QRRFGSALELVNAMAVKGCEPNIVTY 430 (681)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 430 (681)
++.++..+...|...|++++|++ +++...+. -+...+..+...+.. .+++++|...+++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~-~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKK-YFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHH-HHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45566677777888888888888 66666653 356677778888888 999999999999988875 67788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHH
Q 040136 431 TILVDGFCK----EGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLR----RGSLH 502 (681)
Q Consensus 431 ~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 502 (681)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------------------------~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--------------------------YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--------------------------CccHHHHHHHHHHcCCCcccCHH
Confidence 888888888 889999888888877653 67788888888988 99999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 040136 503 EAHKLVNDMLFRGCPLDEITYNGLIKALCN----AGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR----TRKANTA 574 (681)
Q Consensus 503 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 574 (681)
+|++.+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 9999999998875 56677888888888 899999999999999874 56788888999999 9999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 040136 575 LEFLRDMIHRGLTPDIVTYNSLINGLCK----MGCIQEALNLFDKLQAEG 620 (681)
Q Consensus 575 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 620 (681)
++.+++..+.+ +...+..+...|.. .+++++|++.+++..+.|
T Consensus 206 ~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 206 LARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99999999863 36677788888888 899999999999999864
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-12 Score=129.99 Aligned_cols=248 Identities=12% Similarity=0.065 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCccccHHHHHH
Q 040136 393 FTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQ-LEKANIIINEMLAKGLSLNTGDRIEEALG 471 (681)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 471 (681)
..|..+...+...|++++|+..+++.+... +-+...|..+..++...|+ +++|+..|++++...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------------- 162 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------- 162 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--------------
Confidence 445666666777778888888888777663 3356677777777777885 888888777777653
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 040136 472 LYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI 551 (681)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 551 (681)
+.+...|..+..++...|++++|+..|+++++.. +-+..+|..+..++.+.|++++|+..|+++++...
T Consensus 163 ----------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P 231 (382)
T 2h6f_A 163 ----------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231 (382)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred ----------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 2266778888888888888888888888888764 56777888888888888888888888888888653
Q ss_pred CCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCC
Q 040136 552 KPSSISCNILINGLCR-TRKANTA-----LEFLRDMIHRGLTPDIVTYNSLINGLCKMG--CIQEALNLFDKLQAEGIYP 623 (681)
Q Consensus 552 ~p~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p 623 (681)
. +...|+.+..++.. .|..++| ++.+++.++.. +-+...|..+..++...| ++++|++.++++ +. -..
T Consensus 232 ~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~ 307 (382)
T 2h6f_A 232 R-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHS 307 (382)
T ss_dssp T-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCC
T ss_pred C-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCC
Confidence 3 67778888888877 5554666 47777777742 225667777777777777 578888888777 32 233
Q ss_pred CHHHHHHHHHHHHhcC---------ChhHHHHHHHHH-HHCCCCCCH-HHHHHHHHHHHh
Q 040136 624 DAVTYNTLISWHFKEG---------LFDDAFLILHKG-VANGFVPND-ATWYILVRNLVK 672 (681)
Q Consensus 624 ~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~g~~~~~-~~~~~ll~~~~~ 672 (681)
+...+..++.+|.+.| .+++|.++++++ .+ +.|.. ..|..+...+..
T Consensus 308 ~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 308 SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 4667777888887764 257888888888 65 45543 455555555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-12 Score=120.31 Aligned_cols=207 Identities=13% Similarity=-0.005 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHH
Q 040136 392 VFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALG 471 (681)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 471 (681)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 3456667777888888888888888887763 3456778888888888888888888888877653
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 472 LYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC-PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
+.+...+..+...|...|++++|.+.++++...+. +.+...+..+...+...|++++|...++++.+..
T Consensus 102 ----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 102 ----------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23667788888888999999999999998887322 3466778888888999999999999999988864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 551 IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 551 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
. .+...+..++..+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.++++++.+. .|+...
T Consensus 172 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 244 (252)
T 2ho1_A 172 R-NQPSVALEMADLLYKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLE 244 (252)
T ss_dssp S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHH
T ss_pred c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHH
Confidence 3 35788888999999999999999999998875 3346677888888889999999999999999885 455443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-13 Score=125.69 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=122.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 427 IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHK 506 (681)
Q Consensus 427 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (681)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------------~~~~~~~~~la~~~~~~~~~~~A~~ 78 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN------------------------KEDAIPYINFANLLSSVNELERALA 78 (243)
T ss_dssp -------------------CCTTHHHHHTTC------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC------------------------cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445555555666666666666666655532 2245566666666777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040136 507 LVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL 586 (681)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 586 (681)
.++++.+.. +.+..++..+...|...|++++|...++++.+... .+...+..++..+...|++++|.+.++++.+..
T Consensus 79 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 155 (243)
T 2q7f_A 79 FYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN- 155 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 777766653 44666677777777777777777777777776532 255666777777777777777777777776642
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 587 TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+.+...+..+..++...|++++|+..++++.+.. +.+..++..++.+|...|++++|...++++++
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 3356667777777777777777777777777652 33466777777777778888888888887776
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-12 Score=124.27 Aligned_cols=246 Identities=11% Similarity=0.020 Sum_probs=184.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC--HhhHHHHHHH
Q 040136 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPN--IVTYTILVDG 436 (681)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~ 436 (681)
+......+...|++++|+. .++...+.. +.+...+..+...+...|++++|...++...+....++ ...|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~-~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIE-VFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHH-HHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHH-HHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 4455666777777777777 666665543 22445777888888999999999999999887431121 2347888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 040136 437 FCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC 516 (681)
Q Consensus 437 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 516 (681)
+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.+++..+. .
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~ 138 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD------------------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-T 138 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-S
T ss_pred HHHcccHHHHHHHHHHHHhcC------------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-C
Confidence 999999999999998887753 236678889999999999999999999998887 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC---
Q 040136 517 PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK---ANTALEFLRDMIHRG-LTPD--- 589 (681)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~--- 589 (681)
+.+...+..+...+...+++++|...|+++++... .+...+..+..++...|+ +++|...+++..+.. ..|+
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 217 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217 (272)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccch
Confidence 66777888887344455699999999999998643 246778888888888888 888999998887641 1133
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 040136 590 ---IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISW 634 (681)
Q Consensus 590 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 634 (681)
...|..+...|...|++++|++.++++.+. .|+ ...+..+...
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 218 DELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHHHHHhhhh
Confidence 256778889999999999999999999985 454 4444444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-12 Score=128.62 Aligned_cols=245 Identities=9% Similarity=-0.001 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHcHhhcCCCCCHHhHHHHH
Q 040136 114 FDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGV-PGQATRLLLDMKSVYGCQPTFRSYNVVL 192 (681)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~ll 192 (681)
...|..+..++...|++++|...++++++..+ .+..+|..+..++.+.|+ +++|+..|+++. ... +.+...|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al-~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAII-EEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HHC-CCCHHHHHHHH
Confidence 45667777788889999999999999998875 478889999999999996 999999999988 333 55678889999
Q ss_pred HHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCh
Q 040136 193 DVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSK-SNRV 271 (681)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~ 271 (681)
.++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++.+ +.+..+|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999987533 67888889999999999999999999999876 5678889999999988 5665
Q ss_pred hHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-----
Q 040136 272 SEA-----LMLLEEMILMGCTSDVQTFNDVIHGLCKVN--RIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTG----- 339 (681)
Q Consensus 272 ~~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 339 (681)
++| ++.+++.++.. +-+...|..+...+...| ++++|++.+.++ +. .+.+...+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 777 47888887764 456778888888888877 688888888887 32 2334567778888887764
Q ss_pred ----CHHHHHHHHhhc-CCCCh---HHHHHHHHHH
Q 040136 340 ----RVDEARALLNKI-PSANV---VLLNTVINGY 366 (681)
Q Consensus 340 ----~~~~A~~~~~~~-~~~~~---~~~~~l~~~~ 366 (681)
..++|+++|+++ .+.|+ ..|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 257788888777 44332 3455544433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-13 Score=129.50 Aligned_cols=248 Identities=8% Similarity=-0.062 Sum_probs=182.0
Q ss_pred CCCChHHHHHHHHHhhhCCCCC--CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHH
Q 040136 90 LPLDVDTSMEIFTWAGSQEGYC--HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQ 167 (681)
Q Consensus 90 ~~~~~~~al~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (681)
..++++.|+..|+.+....+.. .+...+..+..++...|++++|...|+++.+.++ .+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 4578999999999887753322 2456788888899999999999999999998875 477888999999999999999
Q ss_pred HHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 168 ATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMT 247 (681)
Q Consensus 168 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 247 (681)
|...|+++.. .. +.+...+..+..++...|++++|...|+++.+.. |+.......+..+...|++++|...+....
T Consensus 96 A~~~~~~al~-~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLE-LD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHH-HC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999883 22 4567788888899999999999999999988863 444444455555667789999999998777
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 248 KHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCT---SDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD 324 (681)
Q Consensus 248 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (681)
... +++...+ .++..+...++.++|.+.+++....... .+...+..+...+...|++++|...++++.... |+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 654 3444444 4677777788888888888887653211 114677778888888888888888888887652 32
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHH
Q 040136 325 DITYGVLMHGLCRTGRVDEARALL 348 (681)
Q Consensus 325 ~~~~~~l~~~~~~~g~~~~A~~~~ 348 (681)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 223344566667777666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-12 Score=122.70 Aligned_cols=211 Identities=12% Similarity=0.083 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEAL 470 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~ 470 (681)
....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------- 87 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD------------- 87 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------
Confidence 44556667777888888888888888887753 4467778888888888888888888888877653
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 471 GLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 88 -----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 88 -----------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred -----------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2367778888888888999999999998888764 5577788888888899999999999999888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 040136 551 IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYN 629 (681)
Q Consensus 551 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 629 (681)
. .+...+..++..+...|++++|.+.++++.+.. +.+..++..+..++...|++++|...++++.+. .|+ ...+.
T Consensus 156 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~ 231 (243)
T 2q7f_A 156 E-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLALH 231 (243)
T ss_dssp T-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHHHH
T ss_pred C-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHHHH
Confidence 3 367788888888999999999999999888752 345778888888999999999999999999885 444 44444
Q ss_pred HH
Q 040136 630 TL 631 (681)
Q Consensus 630 ~l 631 (681)
.+
T Consensus 232 ~~ 233 (243)
T 2q7f_A 232 AK 233 (243)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.8e-12 Score=116.21 Aligned_cols=210 Identities=11% Similarity=-0.006 Sum_probs=161.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEAL 470 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~ 470 (681)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence 44566777778888888888888888877753 3456778888888888888888888888877653
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 471 GLYQDMLLEGVTANTVTYNTLIHAFLRR-GSLHEAHKLVNDMLFRGC-PLDEITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
+.+..++..+...+... |++++|...++++.+.+. +.+...+..+...+...|++++|...++++.+
T Consensus 73 -----------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 73 -----------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp -----------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23667788888888888 999999999988887322 33467788888888999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040136 549 KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTY 628 (681)
Q Consensus 549 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 628 (681)
... .+...+..++..+...|++++|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+. .|+....
T Consensus 142 ~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~ 218 (225)
T 2vq2_A 142 AQP-QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEEL 218 (225)
T ss_dssp HST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHH
Confidence 643 2577888888899999999999999998887532146677777777888899999999999988764 4554433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=125.68 Aligned_cols=218 Identities=10% Similarity=-0.089 Sum_probs=128.0
Q ss_pred hCCChHHHHHHHHHcHhhcCC--CCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhH
Q 040136 161 RGGVPGQATRLLLDMKSVYGC--QPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDS 238 (681)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 238 (681)
..|++++|+..|+++...... +.+...+..+...+...|++++|...|++.++.+. .+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 345566666666666521110 11344556666666666666666666666666532 245666667777777777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 239 ACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLV 318 (681)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (681)
|...|+++.+.. +.+..++..+..++...|++++|.+.++++.+.. |+.......+..+...|++++|...+.+...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777776654 3456667777777777777777777777776643 3333333344444566777777777766665
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040136 319 RGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSAN-------VVLLNTVINGYVISGRFDEAKAIFYDSMLS 385 (681)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (681)
.. +++.. ...++..+...++.++|...+.+....+ ...+..++..|...|++++|.. .++....
T Consensus 173 ~~-~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~ 243 (275)
T 1xnf_A 173 KS-DKEQW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA-LFKLAVA 243 (275)
T ss_dssp HS-CCCST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHT
T ss_pred cC-CcchH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Confidence 42 22323 3335666666677777777776655522 2344555555555555555555 4444443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4e-10 Score=120.02 Aligned_cols=153 Identities=10% Similarity=0.037 Sum_probs=106.1
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC---hHHHH
Q 040136 93 DVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGV---PGQAT 169 (681)
Q Consensus 93 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~ 169 (681)
.+...+..|+..+..++ .+...|..++..+.+.+.++.+..+++.+...-+ .....|...+..-.+.|+ .+.+.
T Consensus 47 ~~~d~i~~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 34445555666566554 6788888888888888899999999999888764 577888888888888888 89999
Q ss_pred HHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCc--------CcHHHHHHHHHHC-CC-CCC-hhhHHHHHHHHHh------
Q 040136 170 RLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCH--------KVAPNLFYDMLSK-GI-SPT-VYTFGVVMKALCM------ 232 (681)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~A~~~~~~m~~~-~~-~p~-~~~~~~ll~~~~~------ 232 (681)
.+|++.......+|++..|...+....+.++. +.+.++|+..+.. |. .++ ...|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99998883321247888888888877666554 2234677776553 55 443 4567666665432
Q ss_pred ---cCChhHHHHHHHHHHh
Q 040136 233 ---VNEVDSACSLLRDMTK 248 (681)
Q Consensus 233 ---~g~~~~A~~~~~~~~~ 248 (681)
.++++.+..+|+.+..
T Consensus 204 ~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 3346778888888775
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-12 Score=112.81 Aligned_cols=173 Identities=17% Similarity=0.105 Sum_probs=153.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
++.+|..+...|.+.|++++|++.|++.++.. |.+..++..+..+|.+.|++++|...+..+...... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 77889999999999999999999999999884 668899999999999999999999999999887533 6778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDD 643 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 643 (681)
.+...++++.|.+.+.+.... .+.+...+..+..++.+.|++++|++.|+++.+.. +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999885 23467889999999999999999999999999863 4457889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q 040136 644 AFLILHKGVANGFVPNDAT 662 (681)
Q Consensus 644 A~~~~~~~~~~g~~~~~~~ 662 (681)
|.+.|+++++ +.|+...
T Consensus 160 A~~~~~~al~--~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKAK 176 (184)
T ss_dssp HHHHHHHHHH--TTHHHHH
T ss_pred HHHHHHHHHh--CCccCHH
Confidence 9999999998 5566543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=132.39 Aligned_cols=276 Identities=14% Similarity=0.081 Sum_probs=202.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CcCHhh
Q 040136 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDV----FTFNILIHGLCKQRRFGSALELVNAMAVK----GC-EPNIVT 429 (681)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~ 429 (681)
+..+...+...|++++|+. +++....... .+. ..+..+...+...|++++|...+++..+. +. +.....
T Consensus 51 l~~~g~~~~~~g~~~~A~~-~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVA-FFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHH-HHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3345566777777777777 5555555432 232 46777788888899999999988887653 11 223567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------
Q 040136 430 YTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGS--------- 500 (681)
Q Consensus 430 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------- 500 (681)
+..+...|...|++++|...++++.+. ..... .......++..+...|...|+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 190 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTL----------------ARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGK 190 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH----------------HHHhh--chHHHHHHHHHHHHHHHHcCcccccccchh
Confidence 888888999999999999998876653 11110 011234578888899999999
Q ss_pred --------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHH
Q 040136 501 --------LHEAHKLVNDMLFR----GC-PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS----SISCNILI 562 (681)
Q Consensus 501 --------~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~ 562 (681)
+++|.+.+++..+. +. +....++..+...|...|++++|...++++.+.... .+ ...+..+.
T Consensus 191 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (411)
T 4a1s_A 191 FGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLG 270 (411)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999998887553 11 223457888889999999999999999998764111 12 23788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC--CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 040136 563 NGLCRTRKANTALEFLRDMIHRG--LT---PDIVTYNSLINGLCKMGCIQEALNLFDKLQAE----GIYP-DAVTYNTLI 632 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~--~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~ 632 (681)
..|...|++++|.+.+++..+.. .. ....++..+..++...|++++|...++++.+. +..+ ...++..+.
T Consensus 271 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 350 (411)
T 4a1s_A 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLG 350 (411)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999999999999887631 10 11467888999999999999999999998874 1111 134778899
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 040136 633 SWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
.+|...|++++|.+.++++++.
T Consensus 351 ~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 351 NAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHH
Confidence 9999999999999999999873
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-12 Score=130.42 Aligned_cols=307 Identities=14% Similarity=0.085 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHH
Q 040136 290 VQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPD----DITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVING 365 (681)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 365 (681)
...+......+...|++++|...++++.+.+.. + ..++..+...+...|++++|...+++...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------ 75 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT------------ 75 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------
Confidence 334444555555566666666666655554211 1 12344455555555555555555444211
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC-cCHhhHHHHHHHHHh
Q 040136 366 YVISGRFDEAKAIFYDSMLSVGCIP-DVFTFNILIHGLCKQRRFGSALELVNAMAVK----GCE-PNIVTYTILVDGFCK 439 (681)
Q Consensus 366 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~ 439 (681)
.....+..| ...++..+...+...|++++|...+++..+. +-. ....++..+...|..
T Consensus 76 ----------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 76 ----------------LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp ----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 111111111 1234455555666666666666666655442 100 013467777777888
Q ss_pred cCC--------------------HHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 040136 440 EGQ--------------------LEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRG 499 (681)
Q Consensus 440 ~g~--------------------~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 499 (681)
.|+ +++|...+.+... +..... .......++..+...|...|
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~----------------~~~~~~--~~~~~~~~~~~la~~~~~~g 201 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS----------------LVTALG--DRAAQGRAFGNLGNTHYLLG 201 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH----------------HHHHTT--CHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH----------------HHHhcc--CcHHHHHHHHHHHHHHHHcc
Confidence 888 7777766655443 222110 01113457888889999999
Q ss_pred CHHHHHHHHHHHHhCC----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcC
Q 040136 500 SLHEAHKLVNDMLFRG----CP-LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS----SISCNILINGLCRTR 569 (681)
Q Consensus 500 ~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g 569 (681)
++++|...+++..+.. .+ ....++..+...|...|++++|...++++.+.... .+ ..++..+...|...|
T Consensus 202 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 281 (406)
T 3sf4_A 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 281 (406)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC
Confidence 9999999999887541 11 12347888889999999999999999998764111 11 467788999999999
Q ss_pred CHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcC
Q 040136 570 KANTALEFLRDMIHR----GLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAE----GIYP-DAVTYNTLISWHFKEG 639 (681)
Q Consensus 570 ~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g 639 (681)
++++|.+.+++..+. +..+ ...++..+..++...|++++|...+++..+. +..+ ...++..+...+...|
T Consensus 282 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 282 DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 999999999998763 1111 1457788899999999999999999998764 2112 2456777888888888
Q ss_pred ChhH
Q 040136 640 LFDD 643 (681)
Q Consensus 640 ~~~~ 643 (681)
+...
T Consensus 362 ~~~~ 365 (406)
T 3sf4_A 362 LSYS 365 (406)
T ss_dssp TTSC
T ss_pred HhHH
Confidence 7643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-12 Score=128.66 Aligned_cols=300 Identities=15% Similarity=0.053 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCc-CH
Q 040136 357 VLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPD----VFTFNILIHGLCKQRRFGSALELVNAMAVK----GCEP-NI 427 (681)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~ 427 (681)
..+......+...|++++|+. +++...... +.+ ...+..+...+...|++++|...+++.... +..| ..
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~-~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVS-FFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHH-HHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344555666777777777777 555555442 223 246777888888999999999998886543 2122 24
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-------
Q 040136 428 VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGS------- 500 (681)
Q Consensus 428 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------- 500 (681)
.++..+...|...|++++|...+.+..+. ..... .......++..+...|...|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 149 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDI----------------SRELN--DKVGEARALYNLGNVYHAKGKSFGCPGP 149 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHHT--CHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------HHhcc--cccchHHHHHHHHHHHHHcCCccccccc
Confidence 57888888999999999999999877653 11110 001124578888899999999
Q ss_pred -------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHH
Q 040136 501 -------------LHEAHKLVNDMLFR----GC-PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-KPS----SIS 557 (681)
Q Consensus 501 -------------~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~ 557 (681)
+++|.+.+++.... +. +....++..+...|...|++++|...++++.+... .++ ..+
T Consensus 150 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (406)
T 3sf4_A 150 QDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229 (406)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999998887543 11 12345788888999999999999999999876411 112 247
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHH
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHR----GLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGI-YPD----AVT 627 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~ 627 (681)
+..+...|...|++++|...+++..+. +..+. ..++..+...+...|++++|...++++.+..- ..+ ..+
T Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 309 (406)
T 3sf4_A 230 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 888999999999999999999998753 11111 46778899999999999999999999887410 111 557
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCcc
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVAN----GFVP-NDATWYILVRNLVKEINM 676 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~g~~ 676 (681)
+..+..+|...|++++|...++++++. |..+ ...++..+...+...|+.
T Consensus 310 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 310 CWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 788999999999999999999998763 2112 134566677777776654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.8e-12 Score=124.76 Aligned_cols=276 Identities=15% Similarity=0.089 Sum_probs=201.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCc-CHhh
Q 040136 359 LNTVINGYVISGRFDEAKAIFYDSMLSVGCIPD----VFTFNILIHGLCKQRRFGSALELVNAMAVK----GCEP-NIVT 429 (681)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~ 429 (681)
+......+...|++++|+. +++...... +.+ ...+..+...+...|++++|...+++..+. +..+ ...+
T Consensus 8 l~~~g~~~~~~g~~~~A~~-~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVS-FFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHH-HHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3445566777788888888 666655543 223 356777888888999999999998886543 2122 2557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------
Q 040136 430 YTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGS--------- 500 (681)
Q Consensus 430 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------- 500 (681)
+..+...+...|++++|...+.+..+.. ... ........++..+...|...|+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDIS----------------REL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQD 147 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------HHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC-
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH----------------HHh--cCchHHHHHHHHHHHHHHHcCcccccchhhh
Confidence 7888889999999999999988876531 110 0001124477888889999999
Q ss_pred -----------HHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHH
Q 040136 501 -----------LHEAHKLVNDMLFR----G-CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI-KPS----SISCN 559 (681)
Q Consensus 501 -----------~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~ 559 (681)
+++|.+.+++.... + .+....++..+...+...|++++|...++++.+... .++ ..++.
T Consensus 148 ~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (338)
T 3ro2_A 148 TGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 227 (338)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999998886543 1 122345778888999999999999999999876411 011 24788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHH
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHR----GLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAE----GIYP-DAVTYN 629 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~ 629 (681)
.+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...++++.+. +-.+ ...++.
T Consensus 228 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 307 (338)
T 3ro2_A 228 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW 307 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 8899999999999999999998753 1111 1457788889999999999999999998774 1111 144778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 630 TLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
.+...|.+.|++++|...++++++.
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 308 SLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8999999999999999999999873
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-10 Score=112.46 Aligned_cols=219 Identities=11% Similarity=0.100 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHCCCCCCccccHHHHHHHHH
Q 040136 409 GSALELVNAMAVKGCEPNIVTYTILVDGFCK-------EGQL-------EKANIIINEMLAKGLSLNTGDRIEEALGLYQ 474 (681)
Q Consensus 409 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 474 (681)
++|...|++..... +.+...|..++..+.. .|++ ++|..+|++.+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~------------------ 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------------------ 93 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT------------------
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH------------------
Confidence 57778888887752 4467778777777653 4665 6666666666552
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 040136 475 DMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEI-TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP 553 (681)
Q Consensus 475 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 553 (681)
. .+.+...|..++..+.+.|++++|.++|+++++.. |.+.. +|..++..+.+.|++++|..+|+++++... +
T Consensus 94 ----~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~ 166 (308)
T 2ond_A 94 ----L-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-T 166 (308)
T ss_dssp ----T-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-C
T ss_pred ----h-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-C
Confidence 1 12366789999999999999999999999999863 33444 899999999999999999999999998743 3
Q ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHH
Q 040136 554 SSISCNILINGLC-RTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG-IYP--DAVTYN 629 (681)
Q Consensus 554 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~ 629 (681)
+...|...+.... ..|++++|.++|++.++. .+-+...|..++..+.+.|++++|+.+|+++++.. +.| +...|.
T Consensus 167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~ 245 (308)
T 2ond_A 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4555544443322 379999999999999885 23467889999999999999999999999999963 455 367889
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 630 TLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
.++..+.+.|+.++|..+++++.+.
T Consensus 246 ~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 246 RFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999984
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.9e-11 Score=107.17 Aligned_cols=171 Identities=15% Similarity=0.066 Sum_probs=132.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAH 505 (681)
Q Consensus 426 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (681)
+..+|..+...|.+.|++++|...|++.++.++ -+...+..+..+|.+.|++++|.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p------------------------~~~~~~~~la~~~~~~~~~~~a~ 59 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP------------------------NNVETLLKLGKTYMDIGLPNDAI 59 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------------------------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------------CCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777788888888888888888877776532 26677788888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 506 KLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
..+....... +.+...+..+...+...++++.|...+.++.+... .+...+..+...+...|++++|++.+++.++..
T Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 60 ESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp HHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 8888877763 55677777777888888888888888888887643 367778888888888888888888888888752
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 586 LTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
+.+..+|..+..++.+.|++++|++.|+++++. .|+.
T Consensus 138 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 138 -PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK--EEKK 174 (184)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--THHH
T ss_pred -chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC--CccC
Confidence 335677888888888888888888888888873 5554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=126.82 Aligned_cols=97 Identities=14% Similarity=0.227 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHH
Q 040136 221 YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNS----VVYQTLIHALSKSNRVSEALMLLEEMILM----G-CTSDVQ 291 (681)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~-~~~~~~ 291 (681)
..+..+...+...|++++|...|+++.+.+ +.+. .++..+...|...|++++|.+.+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 344455566777788888888887777754 2232 35667777777778888887777776542 1 112234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 292 TFNDVIHGLCKVNRIHEAAKLVDRMLV 318 (681)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (681)
.+..+...+...|++++|...++++..
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666667777777777777766654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-11 Score=119.91 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS----SISCNILINGLCRTRKANTALEFLRDMIHR----GLTP-DIV 591 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 591 (681)
++..+...+...|++++|...++++.+.... .+ ..++..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4445555555566666666655555432100 01 345556666666667777666666665542 1011 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
++..+..++.+.|++++|...++++.+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5666777777777777777777777663
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-11 Score=127.29 Aligned_cols=215 Identities=11% Similarity=0.012 Sum_probs=160.6
Q ss_pred hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHH
Q 040136 408 FGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQL-EKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTV 486 (681)
Q Consensus 408 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 486 (681)
++++...++...... +.+...+..+...+...|++ ++|...|+++++.. +.+..
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~------------------------p~~~~ 138 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE------------------------PELVE 138 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC------------------------TTCHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC------------------------CCCHH
Confidence 455556666554432 33567777777888888888 88888888777653 22567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNA---------GAVDKGLGLFEEMMRKGIKPSSIS 557 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~ 557 (681)
.|..+..+|...|++++|.+.|++..+. .|+...+..+...|... |++++|+..|+++++.... +...
T Consensus 139 a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~ 215 (474)
T 4abn_A 139 AWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRS 215 (474)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHH
Confidence 7888888888888888888888888876 35567788888888888 8888888888888886432 5777
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 558 CNILINGLCRT--------RKANTALEFLRDMIHRGLT--PDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 558 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
|..+..+|... |++++|++.|++.++.... -+...|..+..+|...|++++|++.|+++.+.. +.+...
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a 294 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEP 294 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 88888888887 8888888888888874210 367788888888888888888888888888752 334567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKG 651 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~ 651 (681)
+..+..++...|++++|.+.+.++
T Consensus 295 ~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 295 QQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 788888888888888887755433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.9e-10 Score=109.26 Aligned_cols=219 Identities=13% Similarity=0.063 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hcCCh-------hHHHHHHHHHHhcCCCcCHhhHHHHHHHHH
Q 040136 373 DEAKAIFYDSMLSVGCIPDVFTFNILIHGLC-------KQRRF-------GSALELVNAMAVKGCEPNIVTYTILVDGFC 438 (681)
Q Consensus 373 ~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 438 (681)
++|.. .++...... +-+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+.
T Consensus 33 ~~a~~-~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMF-AYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHH-HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45666 555555432 346667777776665 35776 899999999887312345678889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 040136 439 KEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTV-TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP 517 (681)
Q Consensus 439 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 517 (681)
+.|++++|..+|+++++..+ .+.. .|..++..+.+.|++++|..+|++.++.. +
T Consensus 111 ~~~~~~~A~~~~~~al~~~p------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p 165 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIED------------------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R 165 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSS------------------------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-T
T ss_pred hcCCHHHHHHHHHHHHhccc------------------------cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 99999999999988887521 1343 78888999999999999999999999874 4
Q ss_pred CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHH
Q 040136 518 LDEITYNGLIKALC-NAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG-LTP--DIVTY 593 (681)
Q Consensus 518 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~ 593 (681)
.+...|........ ..|++++|..+|+++++... .+...|..++..+.+.|++++|..+|++.++.. +.| ....|
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 55666654444332 36999999999999988643 367888999999999999999999999999863 455 46788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 594 NSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
..++..+.+.|+.+.|..+++++.+.
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999985
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-11 Score=121.15 Aligned_cols=129 Identities=12% Similarity=0.061 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRK----GI-KPSSISCNILINGLCRTRKANTALEFLRDMIHR----GLTPDIVT 592 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~ 592 (681)
++..+..+|...|++++|...++++.+. +. .....++..+...+...|++++|.+.+++..+. +-+.....
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444455555555554444431 11 112334444555555555555555555544431 00111122
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 593 YNSLINGLCKMGC---IQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 593 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
+..+...+...|+ +++|+.++++. +..|+ ...+..+...|...|++++|...++++++
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445555555 44444444443 11222 23444555555566666666665555554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-11 Score=123.51 Aligned_cols=203 Identities=14% Similarity=0.052 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040136 466 IEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSL-HEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFE 544 (681)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (681)
+++++..+.+..... +.+...+..+..++...|++ ++|++.|++.++.. +.+..+|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555565544432 34788999999999999999 99999999999874 6678999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 040136 545 EMMRKGIKPSSISCNILINGLCRT---------RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM--------GCIQ 607 (681)
Q Consensus 545 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 607 (681)
++++. .|+...+..+...+... |++++|++.+++.++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99986 46678999999999999 99999999999999863 33678899999999998 9999
Q ss_pred HHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCccc
Q 040136 608 EALNLFDKLQAEGIYP----DAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN-DATWYILVRNLVKEINME 677 (681)
Q Consensus 608 ~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~ 677 (681)
+|+..|+++.+. .| +...|..+..+|...|++++|.+.++++++. .|+ ...+..+...+...|+.+
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999995 55 6889999999999999999999999999984 454 556777777776666543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.1e-12 Score=123.13 Aligned_cols=245 Identities=16% Similarity=0.132 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc
Q 040136 392 VFTFNILIHGLCKQRRFGSALELVNAMAVK-------GCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGD 464 (681)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 464 (681)
..++..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|...++++...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 98 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI-------- 98 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------
Confidence 456677777888888888888888887763 22334567888888999999999999988776553
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHHcCCHH
Q 040136 465 RIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR------GC-PLDEITYNGLIKALCNAGAVD 537 (681)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~ 537 (681)
+........+....++..+...|...|++++|.+.++++.+. +. +....++..+...|...|+++
T Consensus 99 --------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 99 --------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp --------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred --------HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 222221212234567888999999999999999999998764 22 334567888899999999999
Q ss_pred HHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHH
Q 040136 538 KGLGLFEEMMRK------GIKP-SSISCNILINGLCRTRKANTALEFLRDMIHR-------GLTPDI-------VTYNSL 596 (681)
Q Consensus 538 ~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~-------~~~~~l 596 (681)
+|..+++++.+. +..| ...++..+...|...|++++|.+.++++.+. ...+.. ..+..+
T Consensus 171 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (311)
T 3nf1_A 171 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREEC 250 (311)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 999999999874 1122 2457888999999999999999999998863 111211 122233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 597 INGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
...+...+.+.+|...++...... +.+..++..++.+|.+.|++++|.++++++++
T Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 251 KGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445566677777777777631 33466888999999999999999999999986
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-10 Score=117.24 Aligned_cols=239 Identities=9% Similarity=-0.039 Sum_probs=148.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CcccHH
Q 040136 261 LIHALSKSNRVSEALMLLEEMILM----GCTS-DVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFT-P-----DDITYG 329 (681)
Q Consensus 261 li~~~~~~~~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 329 (681)
....+...|++++|.+.+++..+. +-.+ ...++..+...+...|+++.|...+.+..+.-.. + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667778888888888887653 1111 2356777777788888888888888777643111 1 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCh
Q 040136 330 VLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIP-DVFTFNILIHGLCKQRRF 408 (681)
Q Consensus 330 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~ 408 (681)
.+..+|...|++++|...|++.. +.....+..+ ...++..+...|...|++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al----------------------------~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAY----------------------------SMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH----------------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH----------------------------HHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 55666666666666666555421 1111111111 123567778888888999
Q ss_pred hHHHHHHHHHHhc----CC-CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCC
Q 040136 409 GSALELVNAMAVK----GC-EPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTA 483 (681)
Q Consensus 409 ~~A~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 483 (681)
++|...+++..+. +. +....++..+...|.+.|++++|...+++..+. .... +-+.
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~~~~---~~~~ 301 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY----------------SQKA---GDVI 301 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHH---TCHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------HHHc---CCHH
Confidence 9998888887762 22 334567888889999999999999988876553 1111 0011
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGS---LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
....+..+...|...|+ .++|+.++++.. ..+.....+..+...|...|++++|...|+++.+
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12234556677777777 666666666541 1122344566677778888888888888877765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-11 Score=120.11 Aligned_cols=244 Identities=15% Similarity=0.101 Sum_probs=159.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------CC-
Q 040136 358 LLNTVINGYVISGRFDEAKAIFYDSMLSV-------GCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK------GC- 423 (681)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~------~~- 423 (681)
++..+...|...|++++|+. +++..... ..+.....+..+...+...|++++|...+++.... +-
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVP-LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44455555555555555555 44443331 22224456777888888999999999999887764 21
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 424 EPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHE 503 (681)
Q Consensus 424 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 503 (681)
+.....+..+...|...|++++|...++++.+. .........+.....+..+...+...|++++
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI----------------REKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH----------------HHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 224567888899999999999999999877653 2222111112245678889999999999999
Q ss_pred HHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCC-------HHHHHHHH
Q 040136 504 AHKLVNDMLFR------G-CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK-------GIKPS-------SISCNILI 562 (681)
Q Consensus 504 A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-------~~~~~~l~ 562 (681)
|.+.++++.+. + .+....++..+...|...|++++|...++++.+. ...+. ...+..+.
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence 99999998764 2 2334567888999999999999999999999863 11111 12223333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 563 NGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
..+...+.+.+|...++..... .+.+..++..+..+|.+.|++++|.++++++.+.
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444556666677777776653 2334577889999999999999999999998873
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-10 Score=101.42 Aligned_cols=166 Identities=17% Similarity=0.117 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILING 564 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 564 (681)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567778888999999999999999988763 5678889999999999999999999999999874 3367888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 040136 565 LCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDA 644 (681)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 644 (681)
+...|++++|.+.++++.+. .+.+...+..+..++...|++++|...++++.+.. +.+...+..++..+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999886 34567888899999999999999999999999863 44678899999999999999999
Q ss_pred HHHHHHHHHC
Q 040136 645 FLILHKGVAN 654 (681)
Q Consensus 645 ~~~~~~~~~~ 654 (681)
...++++.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999999873
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-09 Score=107.02 Aligned_cols=296 Identities=13% Similarity=0.052 Sum_probs=201.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-cC----HhhHH
Q 040136 361 TVINGYVISGRFDEAKAIFYDSMLSVGCIPDVF----TFNILIHGLCKQRRFGSALELVNAMAVKGCE-PN----IVTYT 431 (681)
Q Consensus 361 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~ 431 (681)
.....+...|++++|.. .++.........+.. .+..+...+...|++++|...+++....... .+ ..++.
T Consensus 19 ~~a~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAER-LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHTTCHHHHHH-HHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH-HHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34455667788888888 555555433222222 4556667788899999999999887653111 11 23356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 432 ILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVT--A-NTVTYNTLIHAFLRRGSLHEAHKLV 508 (681)
Q Consensus 432 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~ 508 (681)
.+...+...|++++|...+++.... .. ..+.. | ....+..+...+...|++++|...+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~----------------~~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQL----------------IN---EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 158 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----------------HH---HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH----------------HH---HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6778889999999999998877653 11 11111 2 2356677888899999999999999
Q ss_pred HHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHH
Q 040136 509 NDMLFRGCP----LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS--SISCN----ILINGLCRTRKANTALEFL 578 (681)
Q Consensus 509 ~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~~~~A~~~~ 578 (681)
++....... ....++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+
T Consensus 159 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 238 (373)
T 1hz4_A 159 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 238 (373)
T ss_dssp HHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 998764221 1245677888899999999999999999876421111 12111 2334577999999999999
Q ss_pred HHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHH
Q 040136 579 RDMIHRGLTP---DIVTYNSLINGLCKMGCIQEALNLFDKLQAE----GIYPDA-VTYNTLISWHFKEGLFDDAFLILHK 650 (681)
Q Consensus 579 ~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (681)
++.......+ ....+..+...+...|++++|...++++... |..++. ..+..+..++...|+.++|...+++
T Consensus 239 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 239 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9887643211 1335667888899999999999999988764 212222 3666778889999999999999998
Q ss_pred HHHC----CCC----CCHHHHHHHHHHHHhcCcc
Q 040136 651 GVAN----GFV----PNDATWYILVRNLVKEINM 676 (681)
Q Consensus 651 ~~~~----g~~----~~~~~~~~ll~~~~~~g~~ 676 (681)
.++. |.. ........++..+......
T Consensus 319 al~~~~~~g~~~~~~~~g~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 319 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCS
T ss_pred HHHHhccccHHHHHHHccHHHHHHHHHHHhCCCC
Confidence 8763 221 1223455667777766665
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-10 Score=115.05 Aligned_cols=235 Identities=11% Similarity=0.007 Sum_probs=174.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC-Cc----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHH
Q 040136 398 LIHGLCKQRRFGSALELVNAMAVKGC-EP----NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGL 472 (681)
Q Consensus 398 ll~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~ 472 (681)
....+...|++++|...+++..+... .+ ...++..+...|...|+++.|...+.+..+.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~---------------- 170 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI---------------- 170 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----------------
Confidence 34456788999999999998875411 11 2456788888999999999999988876653
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040136 473 YQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR----GCP-LDEITYNGLIKALCNAGAVDKGLGLFEEMM 547 (681)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (681)
+.+.... ......+++.+..+|...|++++|.+.+++..+. +.+ ....++..+..+|...|++++|...++++.
T Consensus 171 ~~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 171 YQNHPLY-SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHTSTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCc-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1110000 0013457888999999999999999999988763 111 124577888999999999999999999998
Q ss_pred H-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 040136 548 R-----KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG----LTPDIVTYNSLINGLCKMGC---IQEALNLFDK 615 (681)
Q Consensus 548 ~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 615 (681)
+ .... ...++..+...+.+.|++++|.+.+++..+.. .+.....+..+...+...|+ +++|+..+++
T Consensus 250 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 250 KVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 7 4322 36788899999999999999999999988741 11123456666667778888 7777777776
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 616 LQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 616 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
. +..|+ ...+..+...|...|++++|...++++++
T Consensus 329 ~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 329 K---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp T---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 23333 34667889999999999999999999876
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-10 Score=105.38 Aligned_cols=182 Identities=12% Similarity=0.044 Sum_probs=148.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILI 562 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 562 (681)
.++..+......+...|++++|+..|++.++...+++...+..+..++...|++++|+..|+++++.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3667888888999999999999999999988753377778878899999999999999999999986433 567888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 040136 563 NGLCRTRKANTALEFLRDMIHRGLTPDI-------VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD---AVTYNTLI 632 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 632 (681)
.+|...|++++|++.+++.++.. +.+. ..|..+...+...|++++|+..++++++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998852 2234 45777888888999999999999999884 565 46778888
Q ss_pred HHHHhcCCh---------------------------hHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 633 SWHFKEGLF---------------------------DDAFLILHKGVANGFVPNDATWYILVRNL 670 (681)
Q Consensus 633 ~~~~~~g~~---------------------------~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 670 (681)
.+|...|+. ++|+..++++++ +.|+......++..+
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHHH
Confidence 888888877 899999999998 567765555554443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-10 Score=124.26 Aligned_cols=165 Identities=19% Similarity=0.115 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
+...|+.+..+|.+.|++++|++.|++.++.. |-+..++..+..+|.+.|++++|+..|+++++.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 56789999999999999999999999999874 667899999999999999999999999999997433 6789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChh
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFD 642 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 642 (681)
+|...|++++|++.|++.++.. +-+...|..+..+|...|++++|++.|+++++. .|+ ...+..++.+|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999852 235788999999999999999999999999995 554 778999999999999999
Q ss_pred HHHHHHHHHHH
Q 040136 643 DAFLILHKGVA 653 (681)
Q Consensus 643 ~A~~~~~~~~~ 653 (681)
+|.+.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998876
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-09 Score=106.59 Aligned_cols=199 Identities=10% Similarity=-0.057 Sum_probs=100.8
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCH----HhHHHH
Q 040136 120 LIDKLGANKEFKVIDSVLLQMKEEGIICRES----LFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTF----RSYNVV 191 (681)
Q Consensus 120 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l 191 (681)
....+...|++++|...+++........+.. ++..+...+...|++++|...+++......-..+. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3444556677777777777766654322221 34455566666777777777776655211101111 223444
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CChhhHHH
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSK----GIS--P-TVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCV----PNSVVYQT 260 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~----~~~--p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~ 260 (681)
...+...|++++|...+++.++. +.. | ....+..+...+...|++++|...+++....... ....++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 55566666666666666665542 111 1 1234444555666666666666666665543210 11234555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 261 LIHALSKSNRVSEALMLLEEMILMGCTSD-VQTFN-----DVIHGLCKVNRIHEAAKLVDRMLV 318 (681)
Q Consensus 261 li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~ 318 (681)
+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++...
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 55666666666666666666553211111 01111 122234456666666666655543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.3e-09 Score=104.31 Aligned_cols=235 Identities=13% Similarity=0.022 Sum_probs=168.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCc-CHhh
Q 040136 361 TVINGYVISGRFDEAKAIFYDSMLSVG-CIPD----VFTFNILIHGLCKQRRFGSALELVNAMAVKG-----CEP-NIVT 429 (681)
Q Consensus 361 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~ 429 (681)
.....+...|++++|+. .++...... ..++ ..++..+...+...|+++.|...+++..+.. ..+ ...+
T Consensus 106 ~~g~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIG-YYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHTTCHHHHHH-HHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHH-HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 34445667778888877 555554321 1122 3466777888889999999998888876531 111 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 430 YTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGV-TANTVTYNTLIHAFLRRGSLHEAHKLV 508 (681)
Q Consensus 430 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 508 (681)
++.+..+|...|++++|...|.+.++. .... +. .....++..+..+|...|++++|.+.+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~----------------~~~~---~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALEL----------------AMDI---QNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH----------------HHHc---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 788888999999999999998877653 1111 10 112356788899999999999999999
Q ss_pred HHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 040136 509 NDMLFR----GCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG----IKPSSISCNILINGLCRTRK---ANTALEF 577 (681)
Q Consensus 509 ~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~ 577 (681)
++..+. +.+....++..+...|.+.|++++|...+++..+.. -......+..+...+...++ +.+|+..
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 998871 234457788889999999999999999999998742 11123456667777777888 7788887
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 578 LRDMIHRGLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 578 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+++. +..|+ ...+..+...|...|++++|...|+++.+
T Consensus 326 ~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7763 22233 35667888999999999999999999876
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-10 Score=111.30 Aligned_cols=200 Identities=18% Similarity=0.109 Sum_probs=152.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 040136 438 CKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR--- 514 (681)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 514 (681)
...|++++|...+++. +.++.+......+....++..+...|...|++++|...++++.+.
T Consensus 12 ~~~~~~~~A~~~~~~a----------------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQA----------------LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK 75 (283)
T ss_dssp -CCSCSSSHHHHHHHH----------------HHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----------------HHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 3456677777666544 444555544333345678889999999999999999999998764
Q ss_pred ---C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 515 ---G-CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK-----GI--KPSSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 515 ---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
+ .+....++..+...|...|++++|...++++++. +. .....++..+...|...|++++|.+.+++..+
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 76 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2335668888999999999999999999998864 11 22357788899999999999999999999887
Q ss_pred C------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------------------------------------
Q 040136 584 R------GLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAEG------------------------------------ 620 (681)
Q Consensus 584 ~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------------ 620 (681)
. +..| ...++..+..++...|++++|..+++++.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (283)
T 3edt_B 156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235 (283)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 4 1133 34678889999999999999999999988630
Q ss_pred -----------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 621 -----------IYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 621 -----------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..|+ ..++..+..+|...|++++|..+++++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 236 EYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 34677788888889999999999888875
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.2e-10 Score=120.10 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=116.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAH 505 (681)
Q Consensus 426 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (681)
+...|+.+...|.+.|++++|...|++.++.. +-+...|..+..+|.+.|++++|+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~------------------------P~~~~a~~nLg~~l~~~g~~~eA~ 63 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF------------------------PEFAAAHSNLASVLQQQGKLQEAL 63 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 35567777777777777777777777666643 125666777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 506 KLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
+.|++.++.. |.+..+|..+..+|...|++++|+..|+++++.... +...|+.+..+|...|++++|++.|++.++.
T Consensus 64 ~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l- 140 (723)
T 4gyw_A 64 MHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL- 140 (723)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 7777777663 456677777777777777777777777777775322 5667777777777777777777777777764
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 586 LTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 586 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.| +...+..+..++...|++++|.+.++++.+
T Consensus 141 -~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 141 -KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp -CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred -CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 33 456677777777777777777777777665
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-09 Score=96.74 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=137.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 428 VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKL 507 (681)
Q Consensus 428 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (681)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~ 64 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD------------------------AFDVDVALHLGIAYVKTGAVDRGTEL 64 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT------------------------SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------------ccChHHHHHHHHHHHHcCCHHHHHHH
Confidence 456667777888888888888887765542 23677888888899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 508 VNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLT 587 (681)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 587 (681)
++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +
T Consensus 65 ~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 141 (186)
T 3as5_A 65 LERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-P 141 (186)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-c
Confidence 99988773 5678888889999999999999999999998864 3467888889999999999999999999988863 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 588 PDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
.+...+..+..++...|++++|...++++.+.
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 46788888999999999999999999998874
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-09 Score=98.13 Aligned_cols=196 Identities=5% Similarity=-0.137 Sum_probs=149.4
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
.++..+......+...|++++|...|+++.+..++++...+..+..++...|++++|+..|++.. ... +.+...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI-KKN-YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTT-CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH-HhC-cchHHHHHHH
Confidence 45678888888999999999999999999988764577788889999999999999999999988 332 4456788888
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhhHHHHH
Q 040136 192 LDVLVAGNCHKVAPNLFYDMLSKGISPTV-------YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVP--NSVVYQTLI 262 (681)
Q Consensus 192 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li 262 (681)
..++...|++++|+..|++.++.... +. ..|..+...+...|++++|.+.|++..+.+ +. +..++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 89999999999999999999886422 34 457777788889999999999999998875 33 457777788
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 263 HALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVR 319 (681)
Q Consensus 263 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (681)
.+|...|+ ..++++...+ ..+...|.... ....+.+++|+..+++..+.
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 88765543 3445554443 23444444433 23456689999999998876
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-09 Score=105.16 Aligned_cols=199 Identities=20% Similarity=0.142 Sum_probs=145.3
Q ss_pred hcCChhHHHHHHHHHHhc-------CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHH
Q 040136 404 KQRRFGSALELVNAMAVK-------GCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDM 476 (681)
Q Consensus 404 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 476 (681)
..|++++|...+++..+. ..+....++..+...|...|++++|...++++.+. ..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~~~~ 76 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI----------------REKT 76 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------------HHHH
Confidence 456666666666655442 22234567888888999999999999988877653 2222
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 477 LLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR------G-CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 477 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
.....+....++..+..+|...|++++|.+.++++... . .+....++..+...|...|++++|...++++.+.
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 77 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp TCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11111224567888889999999999999999888764 1 1335667888888999999999999999988774
Q ss_pred ------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------------------------
Q 040136 550 ------GIKP-SSISCNILINGLCRTRKANTALEFLRDMIHR-------------------------------------- 584 (681)
Q Consensus 550 ------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------------------------- 584 (681)
+-.| ...++..+...|...|++++|.+++++..+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (283)
T 3edt_B 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE 236 (283)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 1122 3467788899999999999999999888753
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 585 ----------GLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 585 ----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
..+....++..+..+|...|++++|..+++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 237 YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112245678889999999999999999999876
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.2e-09 Score=101.63 Aligned_cols=217 Identities=12% Similarity=-0.028 Sum_probs=156.0
Q ss_pred ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCC-CH
Q 040136 407 RFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTA-NT 485 (681)
Q Consensus 407 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~ 485 (681)
++++|...+++. ...|...|++++|...|.+.... +.+ .+.++ ..
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~----------------~~~---~~~~~~~a 77 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADY----------------QKK---AGNEDEAG 77 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHH----------------HHH---TTCHHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHH----------------HHH---hCCHHHHH
Confidence 477777777665 34577889999999888776553 111 11111 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCC-C----
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFR----GCPL-DEITYNGLIKALCNA-GAVDKGLGLFEEMMRKGIKP-S---- 554 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p-~---- 554 (681)
.+|+.+..+|...|++++|+..+++.++. |-+. -..++..+...|... |++++|+..|+++++..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 67889999999999999999999988764 2111 145788899999996 99999999999998742111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI------VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAV-- 626 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-- 626 (681)
..++..++..+...|++++|+..+++..+....... ..|..+..++...|++++|+..+++..+ +.|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C-------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCc
Confidence 356888999999999999999999999985322211 1567788889999999999999999987 345422
Q ss_pred ----HHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 627 ----TYNTLISWHF--KEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 627 ----~~~~l~~~~~--~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
.+..++.++. ..+++++|+..|+++.. +.|...
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~~ 274 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWKI 274 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHHH
Confidence 3444556664 45678899998888764 445443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.7e-09 Score=98.47 Aligned_cols=171 Identities=11% Similarity=0.064 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD---EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-P-SSIS 557 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~ 557 (681)
.+...+..+...+.+.|++++|+..|+++++.. |.+ ...+..+..+|.+.|++++|+..|+++++.... | ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 366778888889999999999999999999873 444 678889999999999999999999999986331 2 2466
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHH
Q 040136 558 CNILINGLCR--------TRKANTALEFLRDMIHRGLTPD-IVTY-----------------NSLINGLCKMGCIQEALN 611 (681)
Q Consensus 558 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~ 611 (681)
+..+..++.. .|++++|+..|+++++. .|+ .... ..+..+|.+.|++++|+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 7788888888 99999999999999985 233 2233 456888999999999999
Q ss_pred HHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCH
Q 040136 612 LFDKLQAEGIYPD----AVTYNTLISWHFKE----------GLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 612 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
.|+++++. .|+ ...+..++.+|... |++++|...++++++. .|+.
T Consensus 170 ~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 170 TYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 99999985 444 45777888888866 8999999999999984 4554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-08 Score=93.22 Aligned_cols=176 Identities=12% Similarity=0.003 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNG----------------LIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
..+......+...|++++|+..|++.++.. |.+...+.. +..+|.+.|++++|+..|+++++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344445566788999999999999998873 445667777 899999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 040136 550 GIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC--IQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 550 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
... +...+..+..++...|++++|++.|++.++.. +.+...|..+..+|...|+ .+.+...++.... ..|....
T Consensus 84 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 84 APN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 533 78889999999999999999999999999852 3357888888888876654 4556666666643 2333444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVR 668 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 668 (681)
+..+..++...|++++|...|+++++ +.|+......+.+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 55567777888999999999999997 6788776655544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-08 Score=84.32 Aligned_cols=128 Identities=18% Similarity=0.245 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 523 YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK 602 (681)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 602 (681)
+..+...+...|++++|..+++++.+.+. .+...+..++..+...|++++|.++++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 44555555666666666666666655432 244555556666666666666666666665542 2244555666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 603 MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666666542 23455666666666666777777776666665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-07 Score=87.99 Aligned_cols=172 Identities=14% Similarity=0.051 Sum_probs=130.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGC-PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP-----SSI 556 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~ 556 (681)
++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence 4566667888999999999999999999877753 247778888999999999999999999999885 45 245
Q ss_pred HHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC---CC-
Q 040136 557 SCNILING--LCRTR--KANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE-----GI---YP- 623 (681)
Q Consensus 557 ~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~p- 623 (681)
+...++.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+. +. .|
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 55566655 33345 899999999999875 455334445555889999999999999977653 00 24
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 040136 624 DAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDAT 662 (681)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 662 (681)
|..++..+|......|+ +|.++++++.+ ..|+...
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~ 288 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAF 288 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHH
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChH
Confidence 45566567777777786 89999999998 4566543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-08 Score=82.89 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+. .+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 56778888999999999999999998874 55788889999999999999999999999998743 36778889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 567 RTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
..|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998853 346778889999999999999999999999874
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-08 Score=90.85 Aligned_cols=140 Identities=13% Similarity=0.054 Sum_probs=107.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 488 YNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR 567 (681)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 567 (681)
...+..+|.+.|++++|+..+++.++.. |.+...+..+..+|...|++++|+..|+++++..+. +...+..+...|..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 3448889999999999999999999884 668899999999999999999999999999997533 67888888888876
Q ss_pred cCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 568 TRK--ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633 (681)
Q Consensus 568 ~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 633 (681)
.|. .+.+...++.... ..|....+.....++...|++++|+..|+++++ +.|+......+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 654 4455666666543 233333444556677788999999999999998 5888765554443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-08 Score=96.14 Aligned_cols=199 Identities=12% Similarity=-0.016 Sum_probs=144.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc----CCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHH
Q 040136 399 IHGLCKQRRFGSALELVNAMAVK----GCEPN-IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLY 473 (681)
Q Consensus 399 l~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~ 473 (681)
...|...|++++|...+++..+. |-+++ ..+|+.+..+|.+.|++++|...+++.++. +
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l----------------~ 107 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI----------------F 107 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------H
Confidence 45677889999999988887653 22222 467888999999999999999998877653 1
Q ss_pred HHHHhcCCC-CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040136 474 QDMLLEGVT-ANTVTYNTLIHAFLRR-GSLHEAHKLVNDMLFRGCPL-D----EITYNGLIKALCNAGAVDKGLGLFEEM 546 (681)
Q Consensus 474 ~~~~~~~~~-~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 546 (681)
.+. |-. .-..++..+..+|... |++++|+..|++.++..... + ..++..+...|.+.|++++|+..|+++
T Consensus 108 ~~~---g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 184 (292)
T 1qqe_A 108 THR---GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (292)
T ss_dssp HHT---TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHc---CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 111 100 0135788889999996 99999999999987652110 1 356888999999999999999999999
Q ss_pred HHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHH
Q 040136 547 MRKGIKPSS------ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI------VTYNSLINGLC--KMGCIQEALNL 612 (681)
Q Consensus 547 ~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~ 612 (681)
.+....... ..+..++.++...|++++|...+++.++. .|+. ..+..++.++. ..+++++|+..
T Consensus 185 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~ 262 (292)
T 1qqe_A 185 IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKE 262 (292)
T ss_dssp HHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred HHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 986433222 25777888999999999999999998863 3432 23445566664 45678899998
Q ss_pred HHHHHH
Q 040136 613 FDKLQA 618 (681)
Q Consensus 613 ~~~~~~ 618 (681)
|+++..
T Consensus 263 ~~~~~~ 268 (292)
T 1qqe_A 263 FDNFMR 268 (292)
T ss_dssp HTTSSC
T ss_pred hccCCc
Confidence 877755
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.5e-08 Score=89.16 Aligned_cols=176 Identities=14% Similarity=0.051 Sum_probs=144.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 040136 469 ALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG----AVDKGLGLFE 544 (681)
Q Consensus 469 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 544 (681)
|...|++..+.| ++..+..+...|...+++++|++.|++..+.| ++..+..|...|.. + ++++|..+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444455554443 78889999999999999999999999999876 66778888888887 7 8999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 040136 545 EMMRKGIKPSSISCNILINGLCR----TRKANTALEFLRDMIHRGLT-PDIVTYNSLINGLCK----MGCIQEALNLFDK 615 (681)
Q Consensus 545 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 615 (681)
+..+.| +...+..|...|.. .+++++|+++|++..+.|.. .+...+..|...|.. .+++++|+..|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 998875 67888888888887 88999999999999986421 126778888888988 8899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHHCCC
Q 040136 616 LQAEGIYPDAVTYNTLISWHFKE-G-----LFDDAFLILHKGVANGF 656 (681)
Q Consensus 616 ~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g~ 656 (681)
..+. ..+...+..|...|... | ++++|..++++..+.|.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9985 33556777888888654 3 89999999999999873
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.97 E-value=5.6e-08 Score=91.61 Aligned_cols=141 Identities=12% Similarity=0.098 Sum_probs=72.3
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 204 APNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGC-VPNSVVYQTLIHALSKSNRVSEALMLLEEMI 282 (681)
Q Consensus 204 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 282 (681)
|+..|++....+ .++..++..+..++...|++++|++++.+....+- .-+...+..++.++.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 33444444555666666666666666666655441 1244555566666666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHHHHh--cC--CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHh
Q 040136 283 LMGCTS-----DVQTFNDVIHGLCK--VN--RIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLN 349 (681)
Q Consensus 283 ~~~~~~-----~~~~~~~li~~~~~--~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 349 (681)
+. .| +..+...++.++.. .| ++..|..+|+++.+. .|+..+...++.++.+.|++++|.+.++
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 53 33 23344444444222 23 566666666665443 2221222233334555555555555544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-08 Score=94.49 Aligned_cols=209 Identities=11% Similarity=0.032 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHH
Q 040136 391 DVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPN---IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIE 467 (681)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 467 (681)
+...+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+.+++..+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~-------- 84 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI-------- 84 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC--------
Confidence 44455555666666667777777776666552 222 345556666666666666666666666554211
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 040136 468 EALGLYQDMLLEGVTANTVTYNTLIHAFLR--------RGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKG 539 (681)
Q Consensus 468 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 539 (681)
.+.....+..+..++.. .|++++|...|+++++.. |.+......+...
T Consensus 85 -------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~---------- 140 (261)
T 3qky_A 85 -------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI---------- 140 (261)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH----------
T ss_pred -------------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH----------
Confidence 00123445555555555 666666666666665542 2222222111110
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhc----------CCHH
Q 040136 540 LGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLT-P-DIVTYNSLINGLCKM----------GCIQ 607 (681)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~----------g~~~ 607 (681)
..+... -...+..+...|...|++++|+..|+++++.... + ....+..+..+|... |+++
T Consensus 141 ----~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~ 212 (261)
T 3qky_A 141 ----RELRAK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYR 212 (261)
T ss_dssp ----HHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred ----HHHHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence 000000 0111356678888899999999999988874211 1 235667777777765 8889
Q ss_pred HHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChh
Q 040136 608 EALNLFDKLQAEGIYPDA----VTYNTLISWHFKEGLFD 642 (681)
Q Consensus 608 ~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~ 642 (681)
+|+..++++++. .|+. .....+...+...|+++
T Consensus 213 ~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 213 RAVELYERLLQI--FPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHHHhh
Confidence 999999999885 5553 23333444444444433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-06 Score=87.38 Aligned_cols=125 Identities=10% Similarity=0.084 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT-RKANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
.+|...+....+.++.+.|..+|+++ +. ...+...|...+..-... ++.+.|..+|+...+. .+-+...|...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 45556666666677788888888887 32 122334443222222222 3588888888887774 22234455666776
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888888888888762 2466777777777777888888887777764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-07 Score=85.94 Aligned_cols=176 Identities=16% Similarity=0.102 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHH
Q 040136 410 SALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYN 489 (681)
Q Consensus 410 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 489 (681)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.+ ++..+.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------------------------~~~a~~ 54 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------------------------DGDALA 54 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------------------------CHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------------------------CHHHHH
Confidence 3555566665553 55566666666666777777777776666543 555666
Q ss_pred HHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 040136 490 TLIHAFLRRG----SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN----AGAVDKGLGLFEEMMRKGIK-PSSISCNI 560 (681)
Q Consensus 490 ~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ 560 (681)
.+...|.. + ++++|.+.|++..+.| +...+..|...|.. .+++++|+.+|++..+.|.. .....+..
T Consensus 55 ~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~ 130 (212)
T 3rjv_A 55 LLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQML 130 (212)
T ss_dssp HHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHH
T ss_pred HHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 66666665 5 6777777777776654 55566666666665 67778888888877776421 01566777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 040136 561 LINGLCR----TRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM-G-----CIQEALNLFDKLQAEG 620 (681)
Q Consensus 561 l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 620 (681)
|...|.. .+++++|++.|++..+. ..+...+..|...|... | +.++|+..|++..+.|
T Consensus 131 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 131 LGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7777777 67788888888887775 22344566666666543 2 7888888888887765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-07 Score=86.89 Aligned_cols=168 Identities=13% Similarity=0.053 Sum_probs=128.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP--LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSS--ISCN 559 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~ 559 (681)
+...+..+...+.+.|++++|+..|+++++.... .....+..++.+|.+.|++++|+..|+++++....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666777889999999999999999876311 12457788899999999999999999999986433221 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhc
Q 040136 560 ILINGLCR------------------TRKANTALEFLRDMIHRGLTPDI-VTY-----------------NSLINGLCKM 603 (681)
Q Consensus 560 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~~ 603 (681)
.+..++.. .|++++|+..|+++++. .|+. ..+ ..+...+.+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~ 160 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER 160 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55555543 57899999999999985 3432 222 2456678899
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 604 GCIQEALNLFDKLQAEGIYPDA----VTYNTLISWHFKEGLFDDAFLILHKGVANG 655 (681)
Q Consensus 604 g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 655 (681)
|++++|+..|+++++. .|+. ..+..+..++.+.|++++|.+.++.+...+
T Consensus 161 ~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp TCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 9999999999999985 4542 468889999999999999999999998854
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.7e-08 Score=93.86 Aligned_cols=165 Identities=12% Similarity=0.016 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISC-NIL 561 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l 561 (681)
.+...+..+...+...|++++|...|+++.+.. |.+...+..+...+...|++++|...++++.... |+.... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 355677788888999999999999999998874 6688899999999999999999999999998763 444333 233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 040136 562 INGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD---AVTYNTLISWHFKE 638 (681)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~ 638 (681)
...+...++.++|.+.+++..+.. +.+...+..+...+...|++++|+..++++++. .|+ ...+..++..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHc
Confidence 334667788888999999998862 446788899999999999999999999999985 444 56889999999999
Q ss_pred CChhHHHHHHHHHHH
Q 040136 639 GLFDDAFLILHKGVA 653 (681)
Q Consensus 639 g~~~~A~~~~~~~~~ 653 (681)
|+.++|...+++.+.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999988764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-08 Score=88.15 Aligned_cols=161 Identities=10% Similarity=0.018 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILING-L 565 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~ 565 (681)
.+..+...+...|++++|...+++..+.. |.+...+..+...+...|++++|+..++++.+.. |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 35566778899999999999999988763 6678899999999999999999999999988764 344443333222 2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChh
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD---AVTYNTLISWHFKEGLFD 642 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~ 642 (681)
...+...+|+..+++..+.. +-+...+..+..++...|++++|+..|+++++. .|+ ...+..++.++...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCCC
Confidence 22233445788999988752 235788899999999999999999999999985 443 558889999999999999
Q ss_pred HHHHHHHHHHH
Q 040136 643 DAFLILHKGVA 653 (681)
Q Consensus 643 ~A~~~~~~~~~ 653 (681)
+|...|++.+.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-06 Score=88.92 Aligned_cols=216 Identities=12% Similarity=0.029 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhc
Q 040136 272 SEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKI 351 (681)
Q Consensus 272 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 351 (681)
+.+..+|+++.... +.+...|...+.-+...|+.+.|.+++++.... |....... .|+...+.++. ++.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~- 264 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGD- 264 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHH-
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHH-
Confidence 34667888877653 556777888888888888999999999988877 44332211 12211111111 111
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHH
Q 040136 352 PSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYT 431 (681)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 431 (681)
+...+... ..+.+. .. ........|...+....+.++.+.|..+|+.. ... ..+..+|.
T Consensus 265 ----------l~~~~~~~-~~~~~~------~~--~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i 323 (493)
T 2uy1_A 265 ----------LKRKYSMG-EAESAE------KV--FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFI 323 (493)
T ss_dssp ----------HHHHTC-------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHH
T ss_pred ----------HHHHHHhh-ccchhh------hh--cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHH
Confidence 11111000 000000 00 00001234555566666666777777777777 211 12233333
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 432 ILVDGFCK-EGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVND 510 (681)
Q Consensus 432 ~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 510 (681)
..+..-.. .++.+.|..+|+...+.. +.++..+...++...+.|+.+.|..+|+.
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~------------------------~~~~~~~~~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKH------------------------PDSTLLKEEFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHC------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22222122 235777777777766642 11334445556656667777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 511 MLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 511 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
+.+ ....|...+..=...|+.+.+..+++++.+
T Consensus 380 ~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 380 LEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp SCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 654 345666666655666777777777777664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-08 Score=108.34 Aligned_cols=181 Identities=12% Similarity=-0.042 Sum_probs=144.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 040136 438 CKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP 517 (681)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 517 (681)
...|++++|...++++..... +.... ..+.+...+..+..++...|++++|++.++++.+.. +
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~---------------~~~~~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p 464 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGAL---------------DADGV-DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-G 464 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-----------------------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-C
T ss_pred ccccCHHHHHHHHHHhhhhcc---------------ccccc-ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-c
Confidence 667888888888888772100 00000 013367788899999999999999999999999874 6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 518 LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLI 597 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 597 (681)
.+...+..+..+|...|++++|+..|+++++.... +...+..+..++...|++++ ++.|++.++.+ +.+...|..+.
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg 541 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLA 541 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHH
Confidence 68889999999999999999999999999997533 67888999999999999999 99999999853 33678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 040136 598 NGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGL 640 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 640 (681)
.++.+.|++++|++.|+++.+ +.|+ ...+..+..++...|+
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999987 4666 5577778888766554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-08 Score=87.34 Aligned_cols=140 Identities=11% Similarity=0.012 Sum_probs=71.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 529 ALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQE 608 (681)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 608 (681)
.+...|++++|+..++....... .+...+..+...|.+.|++++|++.|++.++.. +-+...|..+..++...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 33444555555555555544311 122333445555666666666666666655531 2244555666666666666666
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 040136 609 ALNLFDKLQAEGIYP-DAVTYNTLISWHFKEGLFDDAFLI-LHKGVANGFVPN-DATWYILVRNLVKEI 674 (681)
Q Consensus 609 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~g~~~~-~~~~~~ll~~~~~~g 674 (681)
|+..|+++++. .| +..++..+...|.+.|++++|.+. ++++++ +.|+ ...+......+...|
T Consensus 84 A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 66666666653 33 345555666666666666554443 355555 3343 333333333444444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9.2e-09 Score=87.84 Aligned_cols=145 Identities=12% Similarity=0.008 Sum_probs=115.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 491 LIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK 570 (681)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 570 (681)
|...+...|++++|+..+....... +.+...+..+...|.+.|++++|+..|+++++.... +..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 4455667789999999999887652 335566778899999999999999999999997533 78899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 040136 571 ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNL-FDKLQAEGIYP-DAVTYNTLISWHFKEGL 640 (681)
Q Consensus 571 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 640 (681)
+++|+..|++.++.. +-+...|..+..+|.+.|++++|.+. ++++++. .| +..+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 999999999999852 23578899999999999999876655 6888884 55 46677777777777664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-06 Score=82.55 Aligned_cols=237 Identities=11% Similarity=0.065 Sum_probs=178.5
Q ss_pred HHHhcCCh-hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHH
Q 040136 401 GLCKQRRF-GSALELVNAMAVKGCEPNIVTYTILVDGFCKEG--QLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDML 477 (681)
Q Consensus 401 ~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 477 (681)
+..+.|.+ ++|+.+.+.++..+ +-+...|+.-..++...| ++++++..++.++..++
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP------------------- 100 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE------------------- 100 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-------------------
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-------------------
Confidence 33344444 68999999888773 334556777777777777 88888888888777542
Q ss_pred hcCCCCCHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHH
Q 040136 478 LEGVTANTVTYNTLIHAF----LRR---GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVD--KGLGLFEEMMR 548 (681)
Q Consensus 478 ~~~~~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~ 548 (681)
.+..+|+.-...+ ... +++++++++++.+.+.. +-+..+|+.-...+.+.|.++ +++..++++++
T Consensus 101 -----k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~ 174 (306)
T 3dra_A 101 -----KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID 174 (306)
T ss_dssp -----TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 2555565544444 444 78999999999999874 778899998888888899888 99999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC-
Q 040136 549 KGIKPSSISCNILINGLCRTRK------ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQE-ALNLFDKLQAEG- 620 (681)
Q Consensus 549 ~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~- 620 (681)
.++. |...|+.....+...+. ++++++.+++++... +-|...|+.+...+.+.|+..+ +..+.+++.+.+
T Consensus 175 ~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 175 TDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp HCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG
T ss_pred hCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC
Confidence 8655 78888888888877777 899999999999863 4478889988888888888444 556777666532
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 040136 621 -IYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN-DATWYIL 666 (681)
Q Consensus 621 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l 666 (681)
-..+...+..++++|.+.|+.++|.++++.+.+. +.|. ...|...
T Consensus 253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW~~~ 299 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRSNFWDYQ 299 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHHHHHHHH
Confidence 1336778889999999999999999999999863 3454 3444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-07 Score=89.31 Aligned_cols=165 Identities=9% Similarity=-0.009 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHH
Q 040136 112 HTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVV 191 (681)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 191 (681)
.+...+..+...+.+.|++++|...++++.+..+ .+..++..+...|.+.|++++|...++++... .|+.......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHH
Confidence 4556677778888889999999999999888775 37788888889999999999999999888732 3444433333
Q ss_pred H-HHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhc
Q 040136 192 L-DVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPN--SVVYQTLIHALSKS 268 (681)
Q Consensus 192 l-~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 268 (681)
. ..+.+.++.++|...|++.++.. +.+...+..+...+...|++++|...|+++.+.. +.+ ...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHc
Confidence 2 33667778888888888888764 2356778888888888888888888888888765 222 56788888888888
Q ss_pred CChhHHHHHHHHHH
Q 040136 269 NRVSEALMLLEEMI 282 (681)
Q Consensus 269 ~~~~~A~~~~~~m~ 282 (681)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88888888877654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.3e-08 Score=93.66 Aligned_cols=199 Identities=10% Similarity=0.009 Sum_probs=89.9
Q ss_pred cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCC--
Q 040136 405 QRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVT-- 482 (681)
Q Consensus 405 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-- 482 (681)
.|++++|.+++++..+.. +.. + +...++++.|...|.++... ....++.++|...|.+.......
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a~~~---~~~~g~~~~A~~~~~~al~~~~~~~ 70 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKAAVA---FKNAKQLEQAKDAYLQEAEAHANNR 70 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 466777888777766531 111 0 11146777777666654221 00123445555555444332100
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-
Q 040136 483 ---ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR----GCPL-DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKP- 553 (681)
Q Consensus 483 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p- 553 (681)
.-..+|..+..+|...|++++|+..+++.++. |-+. -..++..+...|.. |++++|+..|+++++.....
T Consensus 71 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~ 149 (307)
T 2ifu_A 71 SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE 149 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC
Confidence 01234445555555555555555555554332 1000 12344444455544 55555555555554421000
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 554 S----SISCNILINGLCRTRKANTALEFLRDMIHR----GLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 554 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
+ ..++..+...|...|++++|++.+++.++. +..+. ...+..++.++...|++++|+..|++..
T Consensus 150 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 0 234445555555555555555555555431 11111 1133334444444555555555555554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.8e-08 Score=106.82 Aligned_cols=168 Identities=9% Similarity=-0.079 Sum_probs=78.4
Q ss_pred CCChHHHHHHHHHhh--------hCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 040136 91 PLDVDTSMEIFTWAG--------SQEGYCHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRG 162 (681)
Q Consensus 91 ~~~~~~al~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (681)
.+++++|++.|+.+. ... +.+...+..+..++...|++++|...++++.+.++ .+..++..+..+|...
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 455555555555544 211 13334444445555555555555555555554442 2444555555555555
Q ss_pred CChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 040136 163 GVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSL 242 (681)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 242 (681)
|++++|+..|++.. ... +.+...|..+..++.+.|++++ ++.|++.++.+.. +...+..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al-~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVL-DTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHH-HHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555544 111 2234444445555555555555 5555555444211 334444555555555555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHH
Q 040136 243 LRDMTKHGCVPNSVVYQTLIHALS 266 (681)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~li~~~~ 266 (681)
|+++.+.+ +.+..++..+..++.
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLL 579 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC
T ss_pred HHhhcccC-cccHHHHHHHHHHHH
Confidence 55544433 222334444444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=9.6e-08 Score=101.86 Aligned_cols=152 Identities=12% Similarity=-0.035 Sum_probs=98.3
Q ss_pred ccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040136 464 DRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLF 543 (681)
Q Consensus 464 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 543 (681)
++.++|...+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 566777777777766533 256777777777778888888888888777763 556777777777777888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 040136 544 EEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM---GCIQEALNLFDKLQAE 619 (681)
Q Consensus 544 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 619 (681)
+++++... .+...+..+..+|...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.++++.+.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 87777642 256677777777888888888888888777642 23456677777777777 7788888888877775
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.79 E-value=5.5e-07 Score=82.85 Aligned_cols=185 Identities=9% Similarity=0.017 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCH-HhHHH
Q 040136 114 FDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIIC--RESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTF-RSYNV 190 (681)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ 190 (681)
...+..++..+...|++++|...|+++++..+.. ...++..+..+|.+.|++++|+..|+++.+...-.+.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4445555666667777777777777776654321 13456666777777777777777777766332212221 13333
Q ss_pred HHHHHH------------------hcCCcCcHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 040136 191 VLDVLV------------------AGNCHKVAPNLFYDMLSKGISPTV-YTFGVVMKALCMVNEVDSACSLLRDMTKHGC 251 (681)
Q Consensus 191 ll~~~~------------------~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 251 (681)
+..++. ..|++++|+..|+++++.. |+. .......... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHH-----
Confidence 333333 2455666666666666542 222 2221111000 000000
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 252 VPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSD----VQTFNDVIHGLCKVNRIHEAAKLVDRMLVRG 320 (681)
Q Consensus 252 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 320 (681)
......+...|.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0111345677888899999999999888753 33 2467778888889999999999998887763
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.5e-06 Score=81.38 Aligned_cols=225 Identities=7% Similarity=0.021 Sum_probs=168.4
Q ss_pred HhcCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC--CchHHHHHHHHHHHcCCCCCHHHHHHHHHHH----H
Q 040136 87 LLRLPLDVDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGANK--EFKVIDSVLLQMKEEGIICRESLFILIMKYY----G 160 (681)
Q Consensus 87 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 160 (681)
++......++|++.++.+....| -...++.....++...| +++++...++.+...++. +..+|+.-...+ .
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 34455556789999999887664 45566777777788888 999999999999988764 555665443333 4
Q ss_pred hC---CChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcC--cHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 040136 161 RG---GVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHK--VAPNLFYDMLSKGISPTVYTFGVVMKALCMVNE 235 (681)
Q Consensus 161 ~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 235 (681)
.. +++++++.+++++.. .. +.+..+|+...-++.+.|.++ ++++.++++++.++. |...|+.-...+.+.+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~-~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLS-SD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGG
T ss_pred hccccCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 44 788999999999983 32 667888888888888888888 999999999987644 77777777666666666
Q ss_pred ------hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCH
Q 040136 236 ------VDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSE-ALMLLEEMILMG--CTSDVQTFNDVIHGLCKVNRI 306 (681)
Q Consensus 236 ------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~ 306 (681)
++++++.++.+.... +-|..+|+.+-..+.+.|+... +..+.+++.+.+ -+.+...+..++..+.+.|+.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred cchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 788888888888776 6778888888888888887444 445555554322 134677788888888888888
Q ss_pred HHHHHHHHHHHH
Q 040136 307 HEAAKLVDRMLV 318 (681)
Q Consensus 307 ~~a~~~~~~~~~ 318 (681)
++|.++++.+.+
T Consensus 275 ~~A~~~~~~l~~ 286 (306)
T 3dra_A 275 NESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 889988888875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-07 Score=82.84 Aligned_cols=161 Identities=12% Similarity=0.011 Sum_probs=108.1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHH-H
Q 040136 117 YYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDV-L 195 (681)
Q Consensus 117 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~-~ 195 (681)
+......+.+.|++++|...++++.+..+ .+..++..+...|.+.|++++|+..|+++... .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 44556667788888888888888777654 36677888888888888888888888887622 2244333322212 1
Q ss_pred HhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChhHH
Q 040136 196 VAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVP-NSVVYQTLIHALSKSNRVSEA 274 (681)
Q Consensus 196 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A 274 (681)
...+...+|+..|++.++... -+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 233344456777777777532 246677777777888888888888888877765221 245677777788888888888
Q ss_pred HHHHHHHH
Q 040136 275 LMLLEEMI 282 (681)
Q Consensus 275 ~~~~~~m~ 282 (681)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777655
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-07 Score=98.47 Aligned_cols=154 Identities=12% Similarity=0.028 Sum_probs=117.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 498 RGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEF 577 (681)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 577 (681)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|...|+++++... .+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988763 56788899999999999999999999999998743 3678889999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 040136 578 LRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKE---GLFDDAFLILHKGVAN 654 (681)
Q Consensus 578 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 654 (681)
+++..+.. +.+...+..+..++...|++++|++.++++.+.. +.+...+..+..++... |++++|.+.++++++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998853 3357888999999999999999999999999862 33577888899999999 9999999999999885
Q ss_pred C
Q 040136 655 G 655 (681)
Q Consensus 655 g 655 (681)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.7e-07 Score=75.73 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHF 636 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 636 (681)
.+...+..|.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..++++++.+ +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 44455555666666666666666655531 2245556666666666666666666666666532 223555666666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCH
Q 040136 637 KEGLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
..|++++|.+.|+++++ +.|+.
T Consensus 93 ~~~~~~~A~~~~~~al~--l~P~~ 114 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ--VDPSN 114 (126)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HCCCHHHHHHHHHHHHH--HCcCC
Confidence 66666666666666665 34443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=8.5e-07 Score=80.74 Aligned_cols=133 Identities=6% Similarity=-0.103 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILING 564 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 564 (681)
...+..+...+...|++++|.+.+++.. +++..++..+...|...|++++|+..|+++++... .+...+..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHH
Confidence 3455667777888888888888888763 55777888888888888888888888888887642 366778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 565 LCRTRKANTALEFLRDMIHRGLT--------------P-DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 624 (681)
+...|++++|++.+++..+.... | ....+..+..++...|++++|...|+++.+. .|+
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~ 153 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSE 153 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCS
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Ccc
Confidence 88888888888888888875211 1 1256777788888888888888888888874 454
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.2e-07 Score=87.02 Aligned_cols=193 Identities=9% Similarity=0.003 Sum_probs=101.8
Q ss_pred cCCHHHHHHHHHHHHHhC------CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-CHh----hHHHH
Q 040136 369 SGRFDEAKAIFYDSMLSV------GCIPDV----FTFNILIHGLCKQRRFGSALELVNAMAVKGCEP-NIV----TYTIL 433 (681)
Q Consensus 369 ~g~~~~a~~~~~~~~~~~------~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~----~~~~l 433 (681)
.|++++|.+ +++...+. +..++. ..|......|...|++++|...+.+..+..... +.. +|..+
T Consensus 4 ~~~~~eA~~-~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 4 AQKISEAHE-HIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp HHHHHHHHH-HHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHH-HHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456667777 55443321 112232 234455555666666666666666665542111 111 34444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 434 VDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTA-NTVTYNTLIHAFLRRGSLHEAHKLVNDML 512 (681)
Q Consensus 434 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 512 (681)
..+|.+.|++++|...|++.++. ....|-.. ...++..+..+|.. |++++|++.|++.+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l-------------------~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVM-------------------YVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHH-------------------HHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH-------------------HHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 45555555555555555444331 11111110 12455666666666 77777777777765
Q ss_pred hCCCC----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 513 FRGCP----L-DEITYNGLIKALCNAGAVDKGLGLFEEMMRK----GIKPS-SISCNILINGLCRTRKANTALEFLRDMI 582 (681)
Q Consensus 513 ~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 582 (681)
+.... . ...++..+...|.+.|++++|+..|+++++. +..+. ...+..++.++...|++++|...+++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 53100 0 1345666677777777777777777776653 11111 1245555566666677777777777766
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.3e-06 Score=82.33 Aligned_cols=165 Identities=7% Similarity=-0.063 Sum_probs=127.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHH
Q 040136 489 NTLIHAFLRRGSLHEAHKLVNDMLFRGC-PLDE----ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS----SISC 558 (681)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~ 558 (681)
...+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..|+++.+.... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346778899999999999999887531 1221 13335667777788999999999999984222 22 3468
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHH
Q 040136 559 NILINGLCRTRKANTALEFLRDMIHR-----GLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAE----GIYPD-AVT 627 (681)
Q Consensus 559 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~ 627 (681)
+.++..|...|++++|+..++++++. +..+. ..++..+..+|.+.|++++|+..+++.++. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999998841 12222 347888999999999999999999998864 22222 568
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHH
Q 040136 628 YNTLISWHFKEGL-FDDAFLILHKGVA 653 (681)
Q Consensus 628 ~~~l~~~~~~~g~-~~~A~~~~~~~~~ 653 (681)
|..+..+|.+.|+ +++|.+.++++++
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999995 6999999998875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-06 Score=82.22 Aligned_cols=168 Identities=8% Similarity=-0.054 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--H
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD-----EITYNGLIKALCNAGAVDKGLGLFEEMMRKGI---KPS--S 555 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~ 555 (681)
..+...+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...++++.+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778999999999999998887632211 12234456667788999999999999986421 122 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIH---R-GLTP--DIVTYNSLINGLCKMGCIQEALNLFDKLQAEG----IYPD- 624 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~- 624 (681)
.+++.++..|...|++++|+..+++..+ . +..+ ...++..+..+|...|++++|+..+++..+.. ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5889999999999999999999999873 2 1111 12578889999999999999999999988641 1111
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 040136 625 AVTYNTLISWHFKEGLFDDA-FLILHKGVA 653 (681)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 653 (681)
..+|..+..+|.+.|++++| ...++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56888999999999999999 777887764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-06 Score=78.11 Aligned_cols=128 Identities=11% Similarity=-0.064 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC 601 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 601 (681)
.+..+...+...|++++|...|+++. .|+...+..+...+...|++++|++.+++..+.. +.+...|..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556677778888888888888764 4577888888888888888888888888888753 345677888888888
Q ss_pred hcCCHHHHHHHHHHHHHCC--------------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 602 KMGCIQEALNLFDKLQAEG--------------IYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~--------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
..|++++|+..|+++.+.. ..|+ ...+..+..+|.+.|++++|...++++++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888888888742 1111 267778888888888888888888888874
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-06 Score=74.87 Aligned_cols=128 Identities=13% Similarity=0.023 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC 601 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 601 (681)
.+..+...+...|++++|...|+++++... .+...+..+..++...|++++|++.+++..+.. +.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 344444555555555555555555555421 244555555555555666666666666555531 224455555556666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHH
Q 040136 602 KMGCIQEALNLFDKLQAEGIYPDAVTYNT--LISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
..|++++|...++++.+.. +.+...+.. .+..+...|++++|.+.+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 6666666666666665531 222333322 2223555566666666655543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.5e-07 Score=72.46 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
..+...+..|.+.|++++|+..|+++++... .+...|..+..+|...|++++|++.+++.++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3455566666677777777777777666532 255666666777777777777777777766642 22456666677777
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 040136 601 CKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~ 619 (681)
...|++++|++.|++.++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777777763
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.5e-07 Score=81.26 Aligned_cols=157 Identities=10% Similarity=-0.050 Sum_probs=108.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCC
Q 040136 496 LRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK----GIK-PSSISCNILINGLCRTRK 570 (681)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~ 570 (681)
...|++++|.++++.+... ......++..+...+...|++++|...++++.+. +.. .....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4568888888855554432 2345667788888888888888888888887762 111 124567778888888899
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcC
Q 040136 571 ANTALEFLRDMIHR----GLTP--DIVTYNSLINGLCKMGCIQEALNLFDKLQAEG---IYPD--AVTYNTLISWHFKEG 639 (681)
Q Consensus 571 ~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g 639 (681)
+++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..+.. -.+. ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99888888887653 1111 23456777888888899999998888877531 0111 234567788888899
Q ss_pred ChhHHHHHHHHHHH
Q 040136 640 LFDDAFLILHKGVA 653 (681)
Q Consensus 640 ~~~~A~~~~~~~~~ 653 (681)
++++|...++++++
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999888888776
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.5e-06 Score=80.34 Aligned_cols=199 Identities=12% Similarity=0.020 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHH-
Q 040136 111 CHTFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRES---LFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFR- 186 (681)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~- 186 (681)
.|+......+...+.-.- ..++. ........ .+...+..+...|++++|...+++........++..
T Consensus 43 ~~~~~~l~~i~~~l~~~~-----~~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~ 113 (293)
T 3u3w_A 43 YPSMDILQGIAAKLQIPI-----IHFYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ 113 (293)
T ss_dssp CCCHHHHHHHHHHHTCCT-----HHHHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCHHHHHHHHHHhCcCH-----HHHhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHH
Confidence 467777766666655221 11221 11111222 233446778889999999999998874322233321
Q ss_pred ---hHHHHHHHHHhcCCcCcHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHh----C-CCCC
Q 040136 187 ---SYNVVLDVLVAGNCHKVAPNLFYDMLSKGIS-PT----VYTFGVVMKALCMVNEVDSACSLLRDMTK----H-GCVP 253 (681)
Q Consensus 187 ---~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~-~~~~ 253 (681)
.+..+...+...|++++|+..|++.++.... ++ ..+++.+..+|...|++++|...|+++.+ . +..+
T Consensus 114 ~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (293)
T 3u3w_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh
Confidence 2334556666778889999999998874322 22 22578888888889999999988888774 1 1112
Q ss_pred -ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 040136 254 -NSVVYQTLIHALSKSNRVSEALMLLEEMILM----GCTSD-VQTFNDVIHGLCKVN-RIHEAAKLVDRMLV 318 (681)
Q Consensus 254 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 318 (681)
...++..+..+|.+.|++++|.+.+++..+. +..+. ..+|..+..++.+.| ++++|.+.+++...
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2246778888888889999988888877642 21222 567777888888888 46888888877753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-06 Score=73.82 Aligned_cols=131 Identities=12% Similarity=0.040 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILING 564 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 564 (681)
...+..+...+...|++++|...+++..... +.+..++..+..++...|++++|...++++.+... .+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4567778888999999999999999998874 66788999999999999999999999999998743 367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 040136 565 LCRTRKANTALEFLRDMIHRGLTPDIVTYNS--LINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+...|++++|.+.+++..+.. +.+...+.. .+..+...|++++|+..+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999852 224445533 34447788999999999887754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-05 Score=73.70 Aligned_cols=226 Identities=13% Similarity=0.102 Sum_probs=152.3
Q ss_pred cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCC
Q 040136 405 QRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEG-QLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTA 483 (681)
Q Consensus 405 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 483 (681)
.+..++|+++++.++..+ +-+..+|+.-...+...| .+++++..++.++...+ .
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP------------------------K 121 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL------------------------K 121 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC------------------------C
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC------------------------C
Confidence 344467888888887763 234555666666666666 47777777777766532 2
Q ss_pred CHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCC
Q 040136 484 NTVTYNTLIHAFLRR-G-SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVD--------KGLGLFEEMMRKGIKP 553 (681)
Q Consensus 484 ~~~~~~~li~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p 553 (681)
+..+|+.-..++.+. + ++++++++++.+.+.. +-|..+|+.-...+.+.|.++ ++++.++++++..+.
T Consensus 122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~- 199 (349)
T 3q7a_A 122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR- 199 (349)
T ss_dssp CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-
T ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-
Confidence 667777766666665 6 7788888888888764 557777777666666666665 888888888887544
Q ss_pred CHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------
Q 040136 554 SSISCNILINGLCRTRK-------ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI-------------------- 606 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-------------------- 606 (681)
|...|+.....+.+.++ ++++++.+++++... +-|...|+-+-..+.+.|+.
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDI 278 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccc
Confidence 77888887777777775 678888888888752 33677777766666666653
Q ss_pred HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 040136 607 QEALNLFDKLQAEG-----IYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN 659 (681)
Q Consensus 607 ~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 659 (681)
.....+...+...+ -.++...+..+++.|...|+.++|.++++.+.+. ..|-
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpi 335 (349)
T 3q7a_A 279 ETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQM 335 (349)
T ss_dssp -------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGG
T ss_pred hhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChH
Confidence 22333333333221 0246777888899999999999999999998754 4443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.57 E-value=9.3e-07 Score=74.87 Aligned_cols=96 Identities=9% Similarity=-0.033 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
..+..+...+.+.|++++|+..|+++++..+. +...|..+..+|...|++++|++.|++..+.. +.+...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 34444455555555555555555555554221 34455555555555555555555555555431 11234444555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~ 618 (681)
...|++++|+..|+++++
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555555
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.2e-07 Score=80.80 Aligned_cols=121 Identities=8% Similarity=0.057 Sum_probs=70.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 040136 496 LRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILING-LCRTRKA--N 572 (681)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 572 (681)
...|++++|...++...+.. +.+...+..+...|...|++++|...|+++.+... .+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 34566666666666666552 44566666666666666677777766666666432 245555555655 5566666 6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 573 TALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 573 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
+|...+++.++.. +.+...+..+..++...|++++|+..++++.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666666666542 223455556666666666666666666666663
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=8.5e-07 Score=75.12 Aligned_cols=103 Identities=10% Similarity=-0.102 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLI 632 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 632 (681)
+...+..+...+.+.|++++|++.|++.+... +.+...|..+..+|...|++++|+..|+++.+. .| +...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 34577888899999999999999999999863 346888999999999999999999999999995 45 477889999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 633 SWHFKEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
.+|...|++++|...|+++++ +.|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 999999999999999999998 557765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.5e-06 Score=78.35 Aligned_cols=139 Identities=8% Similarity=-0.075 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD--IVTYNSLING 599 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~ 599 (681)
....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 34456667778888888888888887654 443355666677888888999888888655431 111 2356677888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQAEGIYPD--AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYI 665 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 665 (681)
+...|++++|+..|++.......|. .........++.+.|+.++|...|+++.. ..|+...+..
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~a 246 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAA 246 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHH
Confidence 8888999999999888875433253 34667777888888999999999998887 4566443333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-06 Score=70.39 Aligned_cols=94 Identities=7% Similarity=0.019 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 523 YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK 602 (681)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 602 (681)
+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 33333444444444444444444443311 123333344444444444444444444443321 1123333334444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 040136 603 MGCIQEALNLFDKLQA 618 (681)
Q Consensus 603 ~g~~~~A~~~~~~~~~ 618 (681)
.|++++|...++++.+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-05 Score=76.03 Aligned_cols=173 Identities=12% Similarity=0.043 Sum_probs=126.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040136 428 VTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKL 507 (681)
Q Consensus 428 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (681)
..+...+..+...|++++|...+.+.++...... ... .....+..+...+...|++++|+..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~---~~~---------------~~~~~~~~~~~~~~~~~~~~~A~~~ 137 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP---EFQ---------------QFLQWQYYVAAYVLKKVDYEYCILE 137 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH---HHH---------------HHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh---hHH---------------HHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3455567778889999999998888777532100 000 0112234466677888999999999
Q ss_pred HHHHHhCCC---CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCC-CC--CHHHHHHHHHHHHhcCCHHHHHH
Q 040136 508 VNDMLFRGC---PLD--EITYNGLIKALCNAGAVDKGLGLFEEMMR---KGI-KP--SSISCNILINGLCRTRKANTALE 576 (681)
Q Consensus 508 ~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~ 576 (681)
+++..+... .+. ..+++.+...|...|++++|...|+++.+ ... .+ ...++..++..|...|++++|++
T Consensus 138 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 138 LKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp HHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 999886421 111 45888999999999999999999999883 211 11 12588899999999999999999
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 040136 577 FLRDMIHR----GLTP-DIVTYNSLINGLCKMGCIQEA-LNLFDKLQA 618 (681)
Q Consensus 577 ~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 618 (681)
.+++.++. +... -..+|..+..++.+.|++++| ...++++..
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 99998763 1111 157788999999999999999 777888765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=3.1e-06 Score=69.71 Aligned_cols=121 Identities=12% Similarity=0.005 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 633 (681)
+...+..++..+...|++++|.+.+++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45677888899999999999999999998852 3467888899999999999999999999999862 445778899999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040136 634 WHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKEINME 677 (681)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 677 (681)
++...|++++|...++++++.. +.+...+..+...+.+.|+.+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999853 335677888888888888753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.9e-07 Score=78.17 Aligned_cols=94 Identities=11% Similarity=-0.048 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFK 637 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 637 (681)
+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|+..|+++++.. +.+...+..+..+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3344444444455555555554444421 1234444444444445555555555555544421 1123344444444555
Q ss_pred cCChhHHHHHHHHHHH
Q 040136 638 EGLFDDAFLILHKGVA 653 (681)
Q Consensus 638 ~g~~~~A~~~~~~~~~ 653 (681)
.|++++|...|+++++
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555554444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=4.1e-07 Score=86.90 Aligned_cols=195 Identities=9% Similarity=-0.020 Sum_probs=122.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 426 NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAH 505 (681)
Q Consensus 426 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 505 (681)
+...+..+...+.+.|++++|...|++.+... +.+...|..+..+|.+.|++++|.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~la~~~~~~~~~~~A~ 58 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN------------------------PLVAVYYTNRALCYLKMQQPEQAL 58 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------CccHHHHHHHHHHHHHhcCHHHHH
Confidence 34556667777788888888888887777653 226777888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 506 KLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
..+++.++.. +.+...+..+..+|...|++++|...|+++.+.+.. +...+...+....+. .++.. +.......
T Consensus 59 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~ 132 (281)
T 2c2l_A 59 ADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERR 132 (281)
T ss_dssp HHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHH
Confidence 8888888763 567778888888888888888888888888764211 000011111111111 11111 12222333
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhc-CChhHHHHHHHHHHHC
Q 040136 586 LTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT-YNTLISWHFKE-GLFDDAFLILHKGVAN 654 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 654 (681)
...+......+.. + ..|+.++|++.++++.+. .|+... ...+...+.+. +.+++|.++|.++.+.
T Consensus 133 ~~~~~~i~~~l~~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 133 IHQESELHSYLTR-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCCCCHHHHHHHH-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhHHHHHHHHH-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3444444444433 2 258888888888888764 565443 33444444444 6678888888887753
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.52 E-value=4.2e-06 Score=68.15 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 593 YNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+..+..++...|++++|...++++.+
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33333333344444444444443333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.52 E-value=4.2e-06 Score=68.17 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISW 634 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (681)
...+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|+.+++++.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5677788888889999999999999988752 3467788889999999999999999999999863 4467788999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 635 HFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLVKE 673 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 673 (681)
+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 999999999999999999843 23455555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.7e-06 Score=70.40 Aligned_cols=97 Identities=11% Similarity=0.089 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
...+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|++.+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 34444444444455555555555555444321 134444444444444555555555554444431 1233444444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~ 618 (681)
+...|++++|+..++++.+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4555555555555554444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.5e-06 Score=83.72 Aligned_cols=129 Identities=9% Similarity=-0.098 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS--------------SISCNILINGLCRTRKANTALEFLRDMIHRGLT 587 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 587 (681)
.+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..+++.++.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 344444444444555555555554444321111 3555566666666666666666666666542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 040136 588 PDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDA-FLILHKGV 652 (681)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 652 (681)
.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.++| ...+++|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245556666666666666666666666666531 22344555566666666666655 33444444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.8e-05 Score=72.89 Aligned_cols=246 Identities=13% Similarity=0.027 Sum_probs=165.1
Q ss_pred HhcCChh-HHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHh
Q 040136 403 CKQRRFG-SALELVNAMAVKGCEPNIVTYTILVDGFCKEGQ---LEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLL 478 (681)
Q Consensus 403 ~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 478 (681)
.+.|.+. +|+.+.+.+...+ +-+..+|+.--..+...+. .+... ..+++++.++..+..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~----------------~~l~~EL~~~~~~L~ 102 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESA----------------ALVKAELGFLESCLR 102 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHH----------------HHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhh----------------HHHHHHHHHHHHHHH
Confidence 3455554 6888888888663 2233444443333322221 11110 113344555555555
Q ss_pred cCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCH
Q 040136 479 EGVTANTVTYNTLIHAFLRRG--SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGA-VDKGLGLFEEMMRKGIKPSS 555 (681)
Q Consensus 479 ~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~ 555 (681)
..++ +..+|+.-..++.+.+ .+++++.+++.+.+.. +-|..+|+.-...+...|. +++++..++.+++..+. |.
T Consensus 103 ~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~ 179 (331)
T 3dss_A 103 VNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NY 179 (331)
T ss_dssp HCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CH
T ss_pred hCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CH
Confidence 4333 7888888887888888 4899999999999885 6688899988888888888 59999999999998654 77
Q ss_pred HHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHH
Q 040136 556 ISCNILINGLCRT--------------RKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM-----------GCIQEAL 610 (681)
Q Consensus 556 ~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~ 610 (681)
..|+.....+... +.++++++.+.+.+... +-|...|+-+-..+... +.+++++
T Consensus 180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 8888777776655 45789999999998852 44677787665555554 4578999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 040136 611 NLFDKLQAEGIYPDAVTYNTLISW-----HFKEGLFDDAFLILHKGVANGFVPND-ATWYILVRNLVKEI 674 (681)
Q Consensus 611 ~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g 674 (681)
+.++++.+. .||. .|..+..+ .-..|..+++...+.++.+ +.|.. .-|.-+...+.-..
T Consensus 259 ~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~~~~~~~~ 323 (331)
T 3dss_A 259 ESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKFLLEN 323 (331)
T ss_dssp HHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHH
Confidence 999999984 6764 34332222 2245778899999999998 56754 34455555544433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=9.4e-05 Score=71.22 Aligned_cols=171 Identities=8% Similarity=-0.009 Sum_probs=98.4
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhc-C
Q 040136 122 DKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGG-VPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAG-N 199 (681)
Q Consensus 122 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~ 199 (681)
......+..++|.++.+.++..++. +..+|+.--..+...| .+++++.+++.+. ... +-+..+|+....++... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L-~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFA-VQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHHHHhcC
Confidence 3344445556788888888777753 6666766666666666 4777777777777 222 45566677666666555 5
Q ss_pred -CcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 040136 200 -CHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVD--------SACSLLRDMTKHGCVPNSVVYQTLIHALSKSNR 270 (681)
Q Consensus 200 -~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 270 (681)
++++++++++.+++...+ +..+|+.-.-.+.+.|.++ ++++.++++.+.+ +-|..+|+.....+.+.++
T Consensus 139 ~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 667777777777765432 5555555554444444444 5566666665554 3455555555555555443
Q ss_pred -------hhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 271 -------VSEALMLLEEMILMGCTSDVQTFNDVIH 298 (681)
Q Consensus 271 -------~~~A~~~~~~m~~~~~~~~~~~~~~li~ 298 (681)
++++++.++++.... +-|...|+-+-.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRG 250 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344555554444432 334444444333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-06 Score=71.00 Aligned_cols=103 Identities=15% Similarity=0.072 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG--IYPD----AVTYNTL 631 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~~l 631 (681)
+..++..+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|+..+++.++.+ ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444455555555555555555554431 1234445555555555555555555555554420 0011 1244445
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 040136 632 ISWHFKEGLFDDAFLILHKGVANGFVPNDATW 663 (681)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 663 (681)
..++...|++++|++.|++.++ ..||..+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 5555556666666666666554 33444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=77.07 Aligned_cols=119 Identities=13% Similarity=0.093 Sum_probs=70.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 040136 532 NAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLING-LCKMGCI--QE 608 (681)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 608 (681)
..|++++|...+++.++... .+...+..+...|...|++++|...+++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 35566666666666665432 255666666666666677777777766666542 2245555566666 5566666 66
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 609 ALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 609 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
|+..++++.+.. +.+...+..+..+|...|++++|...++++++
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 777666666642 22355566666666666777777777766666
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-06 Score=70.26 Aligned_cols=119 Identities=13% Similarity=0.001 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 553 PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 356788899999999999999999999999852 3367889999999999999999999999999863 44578899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCc
Q 040136 633 SWHFKEGLFDDAFLILHKGVANGFVPN-DATWYILVRNLVKEIN 675 (681)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~ 675 (681)
.++.+.|++++|.+.++++++. .|+ ...+..+...+.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999984 444 4666677767666553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-06 Score=77.56 Aligned_cols=136 Identities=11% Similarity=-0.042 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR----GC-PLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK----GIKP- 553 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p- 553 (681)
....+..+...+...|++++|...+++..+. +. +....++..+...|...|++++|...+++..+. +-.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 5678888999999999999999999988762 11 224567888889999999999999999988764 2111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 554 -SSISCNILINGLCRTRKANTALEFLRDMIHR---GLTPD--IVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 554 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
....+..+...+...|++++|.+.+++..+. ...+. ..++..+..++...|++++|...+++..+.
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2356788899999999999999999998752 11111 234678888999999999999999988764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.6e-06 Score=67.87 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHF 636 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 636 (681)
.+..+...+...|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..++++++.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444445555555555555555555431 2234455555555555555555555555555531 223445555555555
Q ss_pred hcCChhHHHHHHHHHHH
Q 040136 637 KEGLFDDAFLILHKGVA 653 (681)
Q Consensus 637 ~~g~~~~A~~~~~~~~~ 653 (681)
..|++++|...++++++
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.3e-06 Score=79.49 Aligned_cols=190 Identities=13% Similarity=-0.059 Sum_probs=129.4
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHH-------HHHHHcCCCchHHHHHHHHHHH------------cCC-----
Q 040136 90 LPLDVDTSMEIFTWAGSQEGYCHTFDVYYVL-------IDKLGANKEFKVIDSVLLQMKE------------EGI----- 145 (681)
Q Consensus 90 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~------------~~~----- 145 (681)
..+++..|++.|..+....+ -....|..+ ...+.+.++..++...+..... .|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP--~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE--SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhCh--hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 47899999999999887765 455566555 4455555555555555555444 110
Q ss_pred ---CCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCC--h
Q 040136 146 ---ICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPT--V 220 (681)
Q Consensus 146 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~ 220 (681)
.....+...+...+...|++++|.++|+.+. . + .|+......+...+.+.+++++|+..|+...... .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~-~-~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAP-V-A-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC-C-T-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH-h-c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 0113455567788888999999999998887 2 2 2433355556667888899999999987554431 111 2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 221 YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVP--NSVVYQTLIHALSKSNRVSEALMLLEEMILMG 285 (681)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 285 (681)
..+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 367777888888899999999998887543213 23456667778888899999999998888763
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.5e-06 Score=70.03 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG--LTPD----IVTYNS 595 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~~ 595 (681)
.+..++..+.+.|++++|+..|+++++..+. +...|..+..+|...|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3445555555666666666666665554322 44555555666666666666666666555421 0111 124555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 596 LINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
+..++...|++++|++.|++.++. .||..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 566666666777777766666653 445443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=9e-07 Score=75.05 Aligned_cols=99 Identities=11% Similarity=-0.125 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
+...+..+...+...|++++|+..|++++.... .+...|..+..+|...|++++|++.+++.+... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 455566666677777777777777777776532 256666777777777777777777777777642 224556666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 040136 599 GLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~ 619 (681)
++...|++++|+..|+++++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=6.8e-07 Score=80.35 Aligned_cols=158 Identities=8% Similarity=-0.062 Sum_probs=102.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------HHHHH
Q 040136 495 FLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS---------------SISCN 559 (681)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------~~~~~ 559 (681)
....|+++++.+.++..... .......+..+...+...|++++|...|+++++...... ...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 34455555555555432221 112344566777888888999999999998887532211 26788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEG 639 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 639 (681)
.+..+|...|++++|+..+++.++.. +.+...+..+..++...|++++|+..|+++.+.. +-+...+..+..++...|
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHH
Confidence 88889999999999999999988852 3467788888999999999999999999998852 335667778888888888
Q ss_pred ChhHHH-HHHHHHHHCC
Q 040136 640 LFDDAF-LILHKGVANG 655 (681)
Q Consensus 640 ~~~~A~-~~~~~~~~~g 655 (681)
+.+++. ..+..+...|
T Consensus 171 ~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 171 EARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHC-------------
T ss_pred HHHHHHHHHHHHHhccc
Confidence 777776 5666665543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-06 Score=82.34 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 222 TFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLC 301 (681)
Q Consensus 222 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 301 (681)
.+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444445555555555555544432 2244444555555555555555555555544432 233444444555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 040136 302 KVNRIHEAAKLVDRMLV 318 (681)
Q Consensus 302 ~~~~~~~a~~~~~~~~~ 318 (681)
..|++++|+..+++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=8.9e-06 Score=66.60 Aligned_cols=96 Identities=10% Similarity=0.037 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGL 600 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 600 (681)
..+..+...+.+.|++++|+..|+++++... .+...|..+..++...|++++|+..+++.++.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3455556666666666666666666666532 245666666666666666666666666666642 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~ 618 (681)
...|++++|+..|+++.+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 677777777777766665
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-05 Score=64.70 Aligned_cols=96 Identities=16% Similarity=0.000 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWH 635 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 635 (681)
..+..++..+...|++++|.+.+++..... +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445555556666666666666666665531 2245556666666666666666666666666642 22355566666666
Q ss_pred HhcCChhHHHHHHHHHHH
Q 040136 636 FKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~ 653 (681)
...|++++|.+.++++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 666666666666666665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.37 E-value=9.7e-06 Score=79.51 Aligned_cols=132 Identities=5% Similarity=-0.035 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD---------------EITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
+...+..+...|.+.|++++|+..|++.++.. +.+ ..+|..+..+|.+.|++++|+..++++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888999999999999999999999874 333 58899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 040136 549 KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEA-LNLFDKLQA 618 (681)
Q Consensus 549 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 618 (681)
... .+...+..+..+|...|++++|+..|++.++.. +.+...+..+..++.+.|+.++| ...+++|..
T Consensus 225 ~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 753 378899999999999999999999999999852 33677888899999999999988 556777664
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.8e-06 Score=70.61 Aligned_cols=98 Identities=12% Similarity=-0.110 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLIN 598 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 598 (681)
+...+..+...+.+.|++++|...|++++.... .+...|..+..++...|++++|+..+++.+..+ +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 334444555555666666666666666665432 245555556666666666666666666665532 223444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 040136 599 GLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~ 618 (681)
++...|++++|+..|+++.+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666555
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.33 E-value=6.9e-06 Score=67.55 Aligned_cols=95 Identities=20% Similarity=0.192 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG--IYPD----AVTYNTL 631 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~~l 631 (681)
+..++..+...|++++|...+++..+.. +.+...+..+..++...|++++|+..++++.+.. ..++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3344444444444444444444444431 2233444444444444555555555554444421 0011 3344445
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 040136 632 ISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..++...|++++|.+.++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 5555555555555555555554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00017 Score=69.11 Aligned_cols=157 Identities=10% Similarity=0.059 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG--AVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK-ANTALEF 577 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 577 (681)
+++++.+++.+.... |-+..+|+.-...+.+.| .+++++.+++.+.+.... |...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 678999999998874 678899998888888888 489999999999998654 88899988888888898 6999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 040136 578 LRDMIHRGLTPDIVTYNSLINGLCKM--------------GCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKE----- 638 (681)
Q Consensus 578 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 638 (681)
++++++.. +-|...|+.....+... +.++++++.+.+++... +-|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 99999874 34778888777776655 45889999999999863 44677888777776665
Q ss_pred ------CChhHHHHHHHHHHHCCCCCCHHHHH
Q 040136 639 ------GLFDDAFLILHKGVANGFVPNDATWY 664 (681)
Q Consensus 639 ------g~~~~A~~~~~~~~~~g~~~~~~~~~ 664 (681)
+.++++++.++++++ +.||. .|.
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~-~w~ 274 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPEN-KWC 274 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTC-HHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCccc-chH
Confidence 468899999999998 67776 343
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.9e-05 Score=62.28 Aligned_cols=95 Identities=11% Similarity=0.030 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLC 601 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 601 (681)
.+..+...+...|++++|...|+++..... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 444455555555566666665555555421 244555555555556666666666666555531 223455555566666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 040136 602 KMGCIQEALNLFDKLQA 618 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~ 618 (681)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 66666666666666655
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-05 Score=66.29 Aligned_cols=97 Identities=18% Similarity=-0.006 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD----IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYN 629 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 629 (681)
+...+..+...+...|++++|.+.+++..+. .|+ ...|..+..++...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3445555555556666666666666665553 333 4555556666666666666666666666531 22345556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 040136 630 TLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.+..++...|++++|...++++++
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666665
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.26 E-value=8.7e-06 Score=66.92 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL--TPD----IVTYNS 595 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 595 (681)
.+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44455555555666666666666555542 22445555555566666666666666665554310 111 445556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 596 LINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633 (681)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 633 (681)
+..++...|++++|...|+++.+. .|+......+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 666666666666666666666663 345444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.8e-06 Score=70.36 Aligned_cols=100 Identities=10% Similarity=-0.022 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 518 LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLI 597 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 597 (681)
.+...+..+...+.+.|++++|+..|+++++.... +...|..+..+|...|++++|+..+++.++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35667777788888888888888888888876432 67777888888888888888888888888752 23567777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 040136 598 NGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
.++...|++++|+..|+++++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888888774
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.26 E-value=7.2e-06 Score=68.88 Aligned_cols=95 Identities=12% Similarity=0.004 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 487 TYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLC 566 (681)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (681)
.+..+...+.+.|++++|...|+.+.... |.+...|..+..+|...|++++|+..|+++++.... +...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 34444555555666666666666555542 445555555555666666666666666665554322 3445555555566
Q ss_pred hcCCHHHHHHHHHHHHH
Q 040136 567 RTRKANTALEFLRDMIH 583 (681)
Q Consensus 567 ~~g~~~~A~~~~~~~~~ 583 (681)
..|++++|.+.|++.++
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.4e-05 Score=64.06 Aligned_cols=97 Identities=8% Similarity=-0.006 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 520 EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLING 599 (681)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 599 (681)
...+..+...+...|++++|...|+++++... .+...+..+..++...|++++|+..+++.++.. +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 33444444444444444444444444444321 133444444444444444444444444444421 1133344444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~ 618 (681)
+...|++++|+..|+++.+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4444444444444444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.6e-06 Score=70.68 Aligned_cols=132 Identities=15% Similarity=0.031 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS----SISCNILINGLCRTRKANTALEFLRDMIHR----GLTP-DIV 591 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 591 (681)
++..+...+...|++++|...++++.+.... ++ ..++..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555554432100 01 134555666666666666666666665542 1001 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQAE----GIYP-DAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.+..+..++...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++.++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5566667777777777777777776653 1111 134566677777788888888888877765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.9e-05 Score=64.50 Aligned_cols=100 Identities=19% Similarity=0.056 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 553 PSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
.+...+..+...+...|++++|+..+++.++.. +.+...|..+..++...|++++|+..++++.+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467888999999999999999999999998863 3467889999999999999999999999999863 34577899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 040136 633 SWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
.++...|++++|...++++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999873
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.2e-05 Score=66.78 Aligned_cols=100 Identities=17% Similarity=0.027 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILI 562 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 562 (681)
.+...+..+...+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..|+++++.... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 345677778888888888888888888888773 557788888888888888888888888888886432 577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 040136 563 NGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
.+|...|++++|++.|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888888874
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=2.6e-05 Score=69.82 Aligned_cols=132 Identities=11% Similarity=-0.041 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDE----------------ITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
...+..+...+...|++++|...|++.+... +.+. .++..+..+|...|++++|+..++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4456677888999999999999999998863 2233 7888899999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHC
Q 040136 549 KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEAL-NLFDKLQAE 619 (681)
Q Consensus 549 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 619 (681)
... .+...+..+..+|...|++++|++.|++.++.. +-+...+..+..++...++.+++. ..+..+...
T Consensus 117 ~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 117 IDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred hCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 743 367889999999999999999999999998852 335677888888888877777766 555555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-05 Score=64.86 Aligned_cols=91 Identities=12% Similarity=-0.039 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLISWHFKE 638 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 638 (681)
.+...+.+.|++++|+..+++.++.. +.+...|..+..++...|++++|+..++++++. .| +...+..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34455556666666666666666531 224555666666666666666666666666663 33 345556666666666
Q ss_pred CChhHHHHHHHHHHH
Q 040136 639 GLFDDAFLILHKGVA 653 (681)
Q Consensus 639 g~~~~A~~~~~~~~~ 653 (681)
|++++|...++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666664
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.9e-05 Score=63.46 Aligned_cols=97 Identities=10% Similarity=0.070 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPS----SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYN 594 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 594 (681)
+...+..+...+...|++++|...|+++.+. .|+ ...+..+..+|...|++++|++.+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3444455555555555555555555555543 223 3445555555555666666666665555531 22344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 595 SLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.+..++...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555566666666666666666655
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.8e-05 Score=62.87 Aligned_cols=97 Identities=6% Similarity=-0.065 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP--DAVTYNTLIS 633 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~ 633 (681)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|+..++++.+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344455555666666666666666665542 2245556666666666666666666666666642 22 3556666666
Q ss_pred HHHhc-CChhHHHHHHHHHHHC
Q 040136 634 WHFKE-GLFDDAFLILHKGVAN 654 (681)
Q Consensus 634 ~~~~~-g~~~~A~~~~~~~~~~ 654 (681)
++... |++++|.+.++++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 66666 6777777766666653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.9e-05 Score=77.70 Aligned_cols=209 Identities=11% Similarity=0.059 Sum_probs=145.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcc----ccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 434 VDGFCKEGQLEKANIIINEMLAKGLSLNTG----DRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVN 509 (681)
Q Consensus 434 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (681)
...+.+.|++++|.+.|..+.+........ +........ ....+..+...|...|++++|.+.+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~al~~l~~~y~~~~~~~~a~~~~~ 79 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNE-----------QETSILELGQLYVTMGAKDKLREFIP 79 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHH-----------HHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445677899999999999988865443220 000111100 11246778899999999999999998
Q ss_pred HHHhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 510 DMLFRGC-PLDE----ITYNGLIKALCNAGAVDKGLGLFEEMMRK----GIKPS-SISCNILINGLCRTRKANTALEFLR 579 (681)
Q Consensus 510 ~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 579 (681)
.+..... .++. .+.+.+...+...|++++|..++...... +..+. ..++..++..|...|++++|..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 8765311 1122 23333444455678999999999887653 22222 4677889999999999999999999
Q ss_pred HHHHC--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCChhHHHHHH
Q 040136 580 DMIHR--GL--TP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAE--GIY-P-D--AVTYNTLISWHFKEGLFDDAFLIL 648 (681)
Q Consensus 580 ~~~~~--~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-p-~--~~~~~~l~~~~~~~g~~~~A~~~~ 648 (681)
+.... +. .+ ...++..++..|...|++++|..++++.... .+. | . ...+..++..+...|++++|...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 88753 11 12 2457888899999999999999999988764 111 2 2 245667777788899999999988
Q ss_pred HHHHH
Q 040136 649 HKGVA 653 (681)
Q Consensus 649 ~~~~~ 653 (681)
.+..+
T Consensus 240 ~~a~~ 244 (434)
T 4b4t_Q 240 FESFE 244 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.3e-05 Score=61.26 Aligned_cols=97 Identities=12% Similarity=0.020 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 040136 221 YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTS--DVQTFNDVIH 298 (681)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~~li~ 298 (681)
..+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|.+.+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344455555555666666666666555543 3344555556666666666666666666665543 22 3555555666
Q ss_pred HHHhc-CCHHHHHHHHHHHHHC
Q 040136 299 GLCKV-NRIHEAAKLVDRMLVR 319 (681)
Q Consensus 299 ~~~~~-~~~~~a~~~~~~~~~~ 319 (681)
.+... |++++|.+.++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 66666 6666666666666544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.1e-05 Score=62.16 Aligned_cols=90 Identities=17% Similarity=0.056 Sum_probs=39.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 040136 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSS---ISCNILINGLCRTRKANTALEFLRDMIHRGLTPD---IVTYNSLINGL 600 (681)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 600 (681)
...+...|++++|...|+++.+.... +. ..+..+..++...|++++|...+++..+.. +.+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 34444455555555555554443211 11 234444444444455555555444444421 111 23344444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 040136 601 CKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~ 618 (681)
...|++++|+..|+++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.8e-05 Score=63.00 Aligned_cols=91 Identities=16% Similarity=0.061 Sum_probs=44.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 491 LIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK 570 (681)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 570 (681)
+...+.+.|++++|...+++.++.. |.+...|..+..++...|++++|+..|+++++.... +...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3344445555555555555555442 334445555555555555555555555555544221 33444445555555555
Q ss_pred HHHHHHHHHHHHH
Q 040136 571 ANTALEFLRDMIH 583 (681)
Q Consensus 571 ~~~A~~~~~~~~~ 583 (681)
+++|+..+++.++
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.1e-05 Score=67.47 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCP-LD----EITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS---- 554 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~---- 554 (681)
..++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...++++.+.... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456778888999999999999999988764111 11 247788889999999999999999998764111 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHR----GLTP-DIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
...+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456788889999999999999999988753 1111 1356778888999999999999999998763
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=4e-05 Score=65.96 Aligned_cols=62 Identities=11% Similarity=0.001 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...++++++
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 345555555566666666666666665532 22344555566666666666666666666655
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.08 E-value=3.7e-05 Score=78.91 Aligned_cols=87 Identities=11% Similarity=-0.004 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISW 634 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 634 (681)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++. .|+ ...+..+..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 445555555555555555555555555531 223445555555555555555555555555552 332 3344555555
Q ss_pred HHhcCChhHHH
Q 040136 635 HFKEGLFDDAF 645 (681)
Q Consensus 635 ~~~~g~~~~A~ 645 (681)
+.+.|+.++|.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00017 Score=73.73 Aligned_cols=198 Identities=8% Similarity=-0.043 Sum_probs=119.6
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCC
Q 040136 121 IDKLGANKEFKVIDSVLLQMKEEGIICR----------------ESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPT 184 (681)
Q Consensus 121 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 184 (681)
.+.+...|++++|.+.+.++.+...... ..++..|+..|...|++++|.+.+..+....+.-++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445566667777776666666442211 124667888888888888888888877633222222
Q ss_pred HH----hHHHHHHHHHhcCCcCcHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CC--
Q 040136 185 FR----SYNVVLDVLVAGNCHKVAPNLFYDMLSK----GISPT-VYTFGVVMKALCMVNEVDSACSLLRDMTKH--GC-- 251 (681)
Q Consensus 185 ~~----~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~-- 251 (681)
.. ..+.+-..+...|+++.|..++.+.... +..+. ..++..+...+...|++++|..++.++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 1222222333557778888877776542 22222 345667777888888888888888776542 11
Q ss_pred -CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 252 -VPNSVVYQTLIHALSKSNRVSEALMLLEEMILM----GCTSD--VQTFNDVIHGLCKVNRIHEAAKLVDRMLV 318 (681)
Q Consensus 252 -~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (681)
+....++..+++.|...|++++|..++++.... +.++. ...+..+...+...+++++|...+.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 112346777778888888888888887776532 11111 23445555566677788887777766653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00029 Score=74.03 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=139.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040136 499 GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGA----------VDKGLGLFEEMMRKGIKPSSISCNILINGLCRT 568 (681)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (681)
...++|++.+++++..+ |-+..+|+.-..++.+.|+ +++++..++.+++...+ +..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34568899999999874 6677888887777777777 89999999999997654 788999999999999
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------
Q 040136 569 R--KANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG-CIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKE------- 638 (681)
Q Consensus 569 g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 638 (681)
| ++++++++++++++.. +-|...|+.-..++.+.| .++++++.++++++.. .-|...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 9 6799999999999974 337888998888888899 8999999999999864 44678888888877663
Q ss_pred -------CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCccc
Q 040136 639 -------GLFDDAFLILHKGVANGFVPN-DATWYILVRNLVKEINME 677 (681)
Q Consensus 639 -------g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~ 677 (681)
+.+++|++.+++++. +.|+ ...|.-+...+.+.|+.+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCcc
Confidence 567999999999998 4454 566776666666666543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=9.4e-06 Score=65.47 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 040136 568 TRKANTALEFLRDMIHRG--LTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAF 645 (681)
Q Consensus 568 ~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 645 (681)
.|++++|+..|++.++.+ -+.+...+..+..++...|++++|+..|+++++.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 01123445555555556666666666666665531 223445555555566666666666
Q ss_pred HHHHHHHH
Q 040136 646 LILHKGVA 653 (681)
Q Consensus 646 ~~~~~~~~ 653 (681)
..++++++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665555
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00031 Score=73.76 Aligned_cols=171 Identities=11% Similarity=0.035 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--C
Q 040136 468 EALGLYQDMLLEGVTANTVTYNTLIHAFLRRGS----------LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAG--A 535 (681)
Q Consensus 468 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 535 (681)
+|++.++++....+. +..+|+.--.++...|+ ++++++.++.+.+.. |-+..+|..-..++.+.| +
T Consensus 47 eal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 47 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 344444444443322 66777777677777777 899999999999874 678899999889999999 7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------
Q 040136 536 VDKGLGLFEEMMRKGIKPSSISCNILINGLCRTR-KANTALEFLRDMIHRGLTPDIVTYNSLINGLCKM----------- 603 (681)
Q Consensus 536 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------- 603 (681)
+++++..++++.+.... +...|+....++.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccccc
Confidence 79999999999998654 8899999998999999 8999999999999864 33778888877777663
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 040136 604 ---GCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDD 643 (681)
Q Consensus 604 ---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 643 (681)
+.++++++.+++++... +-|...|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999999852 3357788888888888777554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00017 Score=58.93 Aligned_cols=90 Identities=17% Similarity=0.096 Sum_probs=49.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLTPDI---VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD----AVTYNTLIS 633 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~ 633 (681)
+...+...|++++|.+.++++.+.. +.+. ..+..+..++...|++++|+..++++.+. .|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHH
Confidence 3445555666666666666655531 1111 34555555666666666666666666553 222 344555556
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 040136 634 WHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~ 653 (681)
++...|++++|...++++++
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666665
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.00 E-value=3.1e-05 Score=79.80 Aligned_cols=118 Identities=12% Similarity=0.033 Sum_probs=66.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040136 494 AFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANT 573 (681)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 573 (681)
.+.+.|++++|.+.+++.++.. +.+..++..+..+|.+.|++++|+..++++++... .+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 3455666666666666666552 44566666666666666666666666666666532 245566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 040136 574 ALEFLRDMIHRGLTPDIVTYNSLING--LCKMGCIQEALNLFD 614 (681)
Q Consensus 574 A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 614 (681)
|++.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666531 1122334344433 556666666666665
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.00 E-value=8.6e-05 Score=62.07 Aligned_cols=74 Identities=19% Similarity=0.091 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHH-----CCC
Q 040136 592 TYNSLINGLCKMGCIQEALNLFDKLQAE-----GIYPD-AVTY----NTLISWHFKEGLFDDAFLILHKGVA-----NGF 656 (681)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~ 656 (681)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|+++++ .|+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 7777777888888888888888888773 11665 4567 7888888888999999999888876 244
Q ss_pred CCCHHHHHH
Q 040136 657 VPNDATWYI 665 (681)
Q Consensus 657 ~~~~~~~~~ 665 (681)
.+.......
T Consensus 139 ~~~~~~~~~ 147 (159)
T 2hr2_A 139 TPGKERMME 147 (159)
T ss_dssp CTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.98 E-value=1.8e-05 Score=81.61 Aligned_cols=120 Identities=14% Similarity=0.073 Sum_probs=96.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC 605 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 605 (681)
+...+.+.|++++|+..|+++++... .+...+..+..+|.+.|++++|++.+++.++.. +.+...|..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34456788999999999999998743 368899999999999999999999999999863 3367889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHH--HHhcCChhHHHHHHH
Q 040136 606 IQEALNLFDKLQAEGIYP-DAVTYNTLISW--HFKEGLFDDAFLILH 649 (681)
Q Consensus 606 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 649 (681)
+++|++.++++.+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999985 44 34456666665 888899999999998
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.97 E-value=9.5e-05 Score=63.53 Aligned_cols=68 Identities=12% Similarity=-0.026 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|+..|++.++. .|+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 3566777777777888888888887777742 335667777777788888888888888887774 5553
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0001 Score=73.02 Aligned_cols=89 Identities=12% Similarity=-0.016 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLIS 633 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 633 (681)
...|..+..+|.+.|++++|++.+++.++.. +.+...|..+..+|...|++++|+..|+++.+. .| +...+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4566667777777777777777777777642 224566667777777777777777777777764 33 4555566666
Q ss_pred HHHhcCChhHHHH
Q 040136 634 WHFKEGLFDDAFL 646 (681)
Q Consensus 634 ~~~~~g~~~~A~~ 646 (681)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00013 Score=72.27 Aligned_cols=124 Identities=10% Similarity=0.011 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFR---------------GCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
..+..+...+.+.|++++|++.|++.++. ..+.+..+|..+..+|.+.|++++|+..++++++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45677788899999999999999998861 123456788889999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 551 IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALN 611 (681)
Q Consensus 551 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 611 (681)
. .+...+..+..+|...|++++|++.|++.++.. +.+...+..+..++...++.+++.+
T Consensus 304 p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 367889999999999999999999999999852 2356777777888877777776654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.9e-05 Score=62.51 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040136 499 GSLHEAHKLVNDMLFRG--CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALE 576 (681)
Q Consensus 499 g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 576 (681)
|++++|+..|++.++.+ -|.+..++..+..+|...|++++|+..|+++++.... +...+..+..++...|++++|++
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444432 1223334444444444444444444444444443221 33444444444444444444444
Q ss_pred HHHHHHH
Q 040136 577 FLRDMIH 583 (681)
Q Consensus 577 ~~~~~~~ 583 (681)
.+++.++
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00054 Score=57.26 Aligned_cols=96 Identities=20% Similarity=0.103 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC
Q 040136 524 NGLIKALCNAGAVDKGLGLFEEMMRKGIKP------SS-----ISCNILINGLCRTRKANTALEFLRDMIHR-----GLT 587 (681)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 587 (681)
......+.+.|++++|+..|+++++..... +. ..|..+..++.+.|++++|+..+++.++. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444555555555555555555532110 12 26777777777777777777777777762 114
Q ss_pred CC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 588 PD-IVTY----NSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 588 p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
|+ ...| .....++...|++++|+..|++.++.
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 54 3566 77778888888888888888888774
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00047 Score=57.15 Aligned_cols=110 Identities=10% Similarity=-0.029 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 040136 535 AVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK----MGCIQEAL 610 (681)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 610 (681)
++++|..+|++..+.| .++.. +...|...+.+++|++.|++..+.| +...+..|...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555544 11211 4444444455555555555555542 34444555555554 45566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 040136 611 NLFDKLQAEGIYPDAVTYNTLISWHFK----EGLFDDAFLILHKGVANG 655 (681)
Q Consensus 611 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 655 (681)
..|++..+.| +...+..|...|.. .++.++|..++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 44455555555555 556666666666666554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0002 Score=73.45 Aligned_cols=131 Identities=6% Similarity=-0.011 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLD---------------EITYNGLIKALCNAGAVDKGLGLFEEMMR 548 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (681)
....|..+...|.+.|++++|+..|++.++.. +.+ ...|..+..+|.+.|++++|+..++++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44567788889999999999999999998863 333 57888999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHH
Q 040136 549 KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNSLINGLCKMGCIQEALN-LFDKLQA 618 (681)
Q Consensus 549 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 618 (681)
... .+...|..+..+|...|++++|+..|++.++. .| +...+..+..++.+.++.++|.+ .++.|..
T Consensus 346 ~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 LDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 753 37888999999999999999999999999985 34 45678888888888898887764 4555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.82 E-value=4.3e-05 Score=74.88 Aligned_cols=148 Identities=11% Similarity=0.033 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILIN 563 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 563 (681)
....+..+...+.+.|++++|...|++.+.. .|+... +...|+.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3455666667777777777777777777665 222221 112223333322111 136778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCh
Q 040136 564 GLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISW-HFKEGLF 641 (681)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~ 641 (681)
+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++. .|+ ...+..+... ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988752 336778888999999999999999999998874 554 3455555555 2345667
Q ss_pred hHHHHHHHHHHH
Q 040136 642 DDAFLILHKGVA 653 (681)
Q Consensus 642 ~~A~~~~~~~~~ 653 (681)
+++...|++|..
T Consensus 316 ~~a~~~~~~~l~ 327 (338)
T 2if4_A 316 QKQKEMYKGIFK 327 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhC
Confidence 788888888876
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00064 Score=56.32 Aligned_cols=111 Identities=13% Similarity=0.002 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 040136 499 GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR----TRKANTA 574 (681)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 574 (681)
+++++|.+.|++..+.| .++.. |...|...+.+++|..+|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677777777777776 33332 6666666667777888888877764 56777777777776 6788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 040136 575 LEFLRDMIHRGLTPDIVTYNSLINGLCK----MGCIQEALNLFDKLQAEG 620 (681)
Q Consensus 575 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 620 (681)
++.|++..+.| +...+..|...|.. .++.++|+..|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888877753 55666677777776 778888888888887765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00019 Score=73.45 Aligned_cols=132 Identities=9% Similarity=0.027 Sum_probs=87.9
Q ss_pred HHHhcCChhHHHHHHHHHHhc-----C--CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHH
Q 040136 401 GLCKQRRFGSALELVNAMAVK-----G--CEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLY 473 (681)
Q Consensus 401 ~~~~~~~~~~A~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~ 473 (681)
.+...|++++|..++++.++. | .+....+++.|..+|...|++++|..++++.++ ++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~----------------i~ 381 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD----------------GY 381 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------HH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------HH
Confidence 456788999999888887653 1 111346789999999999999999998876544 34
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040136 474 QDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR-----GC--PLDEITYNGLIKALCNAGAVDKGLGLFEEM 546 (681)
Q Consensus 474 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 546 (681)
.+......+-...+++.|...|...|++++|..++++..+. |. |....+.+.+..++...+.+++|+.+|..+
T Consensus 382 ~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 382 MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333334466778888888888888888887776542 21 112233444555566666677777777766
Q ss_pred HH
Q 040136 547 MR 548 (681)
Q Consensus 547 ~~ 548 (681)
.+
T Consensus 462 ~~ 463 (490)
T 3n71_A 462 RE 463 (490)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00024 Score=72.70 Aligned_cols=125 Identities=10% Similarity=-0.007 Sum_probs=78.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHH
Q 040136 494 AFLRRGSLHEAHKLVNDMLFR-----G--CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK-----GIK-PS-SISCN 559 (681)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-p~-~~~~~ 559 (681)
.+...|++++|+.++++.++. | .+....+++.|..+|...|++++|+.+++++++. |.. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778888888888776543 1 1123456777777888888888888887776642 211 12 25567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 560 ILINGLCRTRKANTALEFLRDMIHR-----GL-TPD-IVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
.|...|...|++++|+.++++.++- |. .|+ ..+.+.+.+++...+.+++|+.++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777776541 21 122 23344555666667777777777777665
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00011 Score=72.01 Aligned_cols=146 Identities=13% Similarity=0.096 Sum_probs=80.2
Q ss_pred HHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040136 452 EMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALC 531 (681)
Q Consensus 452 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 531 (681)
.....|......++.++|...|.+..... |+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 33444445556788999999999887653 22221 223344444433321 136778888899
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCHHHH
Q 040136 532 NAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLING-LCKMGCIQEA 609 (681)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A 609 (681)
+.|++++|+..++++++... .+...|..+..+|...|++++|+..|++.++. .|+ ...+..+... ....+..+++
T Consensus 242 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988643 36788889999999999999999999998764 343 4445555544 2345667788
Q ss_pred HHHHHHHHHC
Q 040136 610 LNLFDKLQAE 619 (681)
Q Consensus 610 ~~~~~~~~~~ 619 (681)
...|.+|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888888764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.69 E-value=5.1e-05 Score=60.17 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-------AVT 627 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~ 627 (681)
...+..+...+...|++++|++.+++.++.. +.+...|..+..++...|++++|+..++++++. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 3445555666666666666666666666541 224555666666666666666666666666653 343 334
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 040136 628 YNTLISWHFKEGLFDDAFLILH 649 (681)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~ 649 (681)
+..+..++...|++++|...++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 4455555555555555544433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00014 Score=60.64 Aligned_cols=85 Identities=8% Similarity=-0.050 Sum_probs=45.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 040136 531 CNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKA----------NTALEFLRDMIHRGLTP-DIVTYNSLING 599 (681)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 599 (681)
.+.+.+++|+..++..++.... +...|..+..++...+++ ++|+..|++.++. .| +...|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 3445566666666666665422 556666666666665543 3555555555553 22 33445555555
Q ss_pred HHhcC-----------CHHHHHHHHHHHHH
Q 040136 600 LCKMG-----------CIQEALNLFDKLQA 618 (681)
Q Consensus 600 ~~~~g-----------~~~~A~~~~~~~~~ 618 (681)
|...| ++++|++.|+++++
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 55442 45555555555554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0005 Score=54.24 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------HH
Q 040136 589 DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN-------DA 661 (681)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-------~~ 661 (681)
+...+..+...+...|++++|+..++++++.. +.+...+..+..++.+.|++++|.+.++++++ +.|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 45678888999999999999999999999862 44678899999999999999999999999997 4565 45
Q ss_pred HHHHHHHHHHhcCccc
Q 040136 662 TWYILVRNLVKEINME 677 (681)
Q Consensus 662 ~~~~ll~~~~~~g~~~ 677 (681)
.+..+..++...|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQ 95 (111)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhHh
Confidence 5666666666666543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00031 Score=56.07 Aligned_cols=78 Identities=18% Similarity=0.099 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 539 GLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 539 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
|+..|+++++... .+...+..+...|...|++++|+..+++.++.. +.+...|..+..++...|++++|+..|+++.+
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555422 244555555555555555555555555555531 22344555555555555555555555555554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00038 Score=58.05 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=67.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 496 LRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGA----------VDKGLGLFEEMMRKGIKPSSISCNILINGL 565 (681)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (681)
.+.+.+++|.+.++...+.. |.+...|..+..++...++ +++|+..|+++++.... +...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34456677777777777663 5567777767777666655 35888888888876433 567777788888
Q ss_pred HhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 566 CRTR-----------KANTALEFLRDMIHRGLTPDIVTYNSLI 597 (681)
Q Consensus 566 ~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 597 (681)
...| ++++|++.|++.++ +.|+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 7664 78888888888887 467655554433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00086 Score=53.41 Aligned_cols=79 Identities=14% Similarity=0.049 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 503 EAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMI 582 (681)
Q Consensus 503 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 582 (681)
+|++.+++..+.. |.+...+..+...|...|++++|+..|+++++... .+...+..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555666666553 45666666777777777777777777777766532 245666667777777777777777777666
Q ss_pred H
Q 040136 583 H 583 (681)
Q Consensus 583 ~ 583 (681)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0017 Score=48.74 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++++++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444455555555555555555555431 22344455555555555555555555555554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.002 Score=48.43 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWH 635 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 635 (681)
..+..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555555431 2234455555555555666666666666555531 22334444444444
Q ss_pred H
Q 040136 636 F 636 (681)
Q Consensus 636 ~ 636 (681)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0058 Score=58.73 Aligned_cols=143 Identities=12% Similarity=0.044 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHHH--HcC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---cC-C----HHHHHHHHHHHH
Q 040136 517 PLDEITYNGLIKALC--NAG---AVDKGLGLFEEMMRKGIKPS-SISCNILINGLCR---TR-K----ANTALEFLRDMI 582 (681)
Q Consensus 517 ~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-~----~~~A~~~~~~~~ 582 (681)
|.+...|...+.+.. ..+ +..+|+.+|+++++. .|+ ...+..+..+|.. .+ . .......++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 455666666655433 222 246677777777775 333 2333333333321 01 1 111111111111
Q ss_pred H-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 583 H-RGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 583 ~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
. ...+.+..+|..+...+...|++++|+..+++++.. .|+...|..+...+.-.|++++|.+.++++.. +.|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence 1 112456777877777777779999999999999986 47877887888888999999999999999987 678887
Q ss_pred HHHH
Q 040136 662 TWYI 665 (681)
Q Consensus 662 ~~~~ 665 (681)
+|..
T Consensus 345 t~~~ 348 (372)
T 3ly7_A 345 TLYW 348 (372)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 7644
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0019 Score=49.82 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 555 SISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
...+..+..+|...|++++|++.|++.++.. +.+...|..+..+|...|++++|++.+++.++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444555555555555555555555555431 11334455555555555555555555555543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0018 Score=49.94 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 518 LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
.+...+..+..+|...|++++|+..|+++++.... +...|..+..+|...|++++|++.+++.++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555556666666666666666666554322 344555566666666666666666665543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.012 Score=56.69 Aligned_cols=144 Identities=13% Similarity=0.041 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHHH--hcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cC--CHHH---HHHHHHHHHH
Q 040136 482 TANTVTYNTLIHAFL--RRGS---LHEAHKLVNDMLFRGCPLDEITYNGLIKALCN---AG--AVDK---GLGLFEEMMR 548 (681)
Q Consensus 482 ~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g--~~~~---A~~~~~~~~~ 548 (681)
+.+...|...+.+.. ..++ ..+|..+|++.++.. |-....+..+..+|.. .+ .... ....+.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 456777777776543 3333 578999999999873 5556666665555531 11 1111 1112222111
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040136 549 -KGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVT 627 (681)
Q Consensus 549 -~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 627 (681)
.....+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++.. +.|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 1224577888888888888899999999999999964 7888888889999999999999999999998 4788776
Q ss_pred HHH
Q 040136 628 YNT 630 (681)
Q Consensus 628 ~~~ 630 (681)
|..
T Consensus 346 ~~~ 348 (372)
T 3ly7_A 346 LYW 348 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0034 Score=63.01 Aligned_cols=63 Identities=14% Similarity=-0.070 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAE-----G-IYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.+++.|..+|...|++++|+.+++++++. | -.|+ ..+++.|...|...|++++|..+++++++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34444555555555555555555544432 1 1222 23445555555555555555555555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0076 Score=60.58 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=52.9
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 040136 565 LCRTRKANTALEFLRDMIHR---GLTPD----IVTYNSLINGLCKMGCIQEALNLFDKLQAE-----G-IYPD-AVTYNT 630 (681)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~ 630 (681)
+...|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|+.+++++++. | -.|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44556666666666666542 11121 245666666777777777777776666543 1 1222 335666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 040136 631 LISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
|...|...|++++|..+++++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777777777776664
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.02 Score=47.11 Aligned_cols=65 Identities=12% Similarity=0.064 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 588 PDIVTYNSLINGLCKMG---CIQEALNLFDKLQAEGIYP--DAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 588 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
++..+...+.+++++++ +.++++.+++...+.+ .| +...+..|.-+|.+.|++++|+++++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444445555544 3345555555554432 13 122333344444555555555555555554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0053 Score=61.63 Aligned_cols=85 Identities=12% Similarity=-0.024 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHH
Q 040136 534 GAVDKGLGLFEEMMRK---GIKPS----SISCNILINGLCRTRKANTALEFLRDMIHR-----G-LTPD-IVTYNSLING 599 (681)
Q Consensus 534 g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~ 599 (681)
|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|+.++++.++- | -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554432 11111 245566666666666666666666665531 1 1233 2456677777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 040136 600 LCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~ 618 (681)
|...|++++|+.+++++.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777776655
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.008 Score=45.93 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=28.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 563 NGLCRTRKANTALEFLRDMIHRGLTPDIV-TYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
..+...|++++|++.+++.++.. +.+.. .+..+..++...|++++|+..|+++++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555431 11334 455555555555555555555555555
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.011 Score=45.22 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=33.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 492 IHAFLRRGSLHEAHKLVNDMLFRGCPLDEI-TYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
...+.+.|++++|.+.++++.+.. +.+.. .+..+..+|...|++++|...|+++++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334555666666666666665542 33445 5566666666666666666666666654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.016 Score=58.30 Aligned_cols=91 Identities=11% Similarity=0.031 Sum_probs=51.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHH
Q 040136 493 HAFLRRGSLHEAHKLVNDMLFRG---CPL----DEITYNGLIKALCNAGAVDKGLGLFEEMMRK-----GI-KPS-SISC 558 (681)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~ 558 (681)
..+.+.|++++|+.++++.++.. ..+ ...+++.|+.+|...|++++|+.++++++.- |. .|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33556677777777777766431 111 2345666666677777777777776666542 21 111 2445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 559 NILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 559 ~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
+.|...|...|++++|+.++++.++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5666666666666666666665543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.13 Score=57.03 Aligned_cols=161 Identities=17% Similarity=0.153 Sum_probs=101.5
Q ss_pred HHhCCChHHHHH-HHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChh
Q 040136 159 YGRGGVPGQATR-LLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVD 237 (681)
Q Consensus 159 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 237 (681)
....+++++|.+ ++..+. +......++..+.+.|..++|+++.++- ..-.......|+++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHH
Confidence 345677777765 332111 0222266666677777777777655211 11133345678888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 238 SACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRML 317 (681)
Q Consensus 238 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (681)
+|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 888875443 3567888888888889999999888887652 3345555566777777666666655
Q ss_pred HCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 040136 318 VRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKA 377 (681)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 377 (681)
..| -++....+|.+.|++++|.+++ .+.+++++|..
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~ 770 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAF 770 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHH
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHH
Confidence 543 2344555677778888887754 44667777776
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.03 Score=42.11 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 588 PDIVTYNSLINGLCKMGC---IQEALNLFDKLQAEGIYP-DAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 588 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
.|...+..+..++...++ .++|..++++.++. .| +......+...+.+.|++++|...|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455556666666554433 56677777776664 33 3556666666667777777777777777663
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.097 Score=58.02 Aligned_cols=97 Identities=14% Similarity=0.056 Sum_probs=55.1
Q ss_pred HhcCCHHHHHH-HHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 040136 336 CRTGRVDEARA-LLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALEL 414 (681)
Q Consensus 336 ~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~ 414 (681)
...+++++|.+ ++..++. ......++..+.+.|..++|++ +.+ +.. .-.......|+++.|.++
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~-~~~---------~~~---~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALN-ISP---------DQD---QKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHH-HCC---------CHH---HHHHHHHHHTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHhee-cCC---------Ccc---hheehhhhcCCHHHHHHH
Confidence 34566666655 4433220 1122555556666677777666 321 111 112334566777777776
Q ss_pred HHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 415 VNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEM 453 (681)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 453 (681)
.+.+ .+...|..+...+.+.++++.|.+.|..+
T Consensus 675 ~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 675 LTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5332 35567777888888888888777777654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.077 Score=43.64 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 040136 536 VDKGLGLFEEMMRKGIKPSSISCNILINGLCRTR---KANTALEFLRDMIHRGLTP--DIVTYNSLINGLCKMGCIQEAL 610 (681)
Q Consensus 536 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 610 (681)
...+++.|.+....|. ++..+...+..++++.+ +.++++.++++..+.+ .| +...+-.|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455566666655554 56677777777777777 5557777777777653 23 2344445566677778888888
Q ss_pred HHHHHHHHCCCCCC
Q 040136 611 NLFDKLQAEGIYPD 624 (681)
Q Consensus 611 ~~~~~~~~~~~~p~ 624 (681)
++++.+++ +.|+
T Consensus 92 ~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHH--HCTT
T ss_pred HHHHHHHh--cCCC
Confidence 88888877 4664
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.066 Score=40.19 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 518 LDEITYNGLIKALCNAGA---VDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHR 584 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (681)
.++..+..+..++...++ .++|..+++++++.... +......+...+...|++++|+..|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344445555555443333 45555555555554322 3444555555555555555555555555553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.12 Score=47.46 Aligned_cols=94 Identities=18% Similarity=0.121 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 040136 501 LHEAHKLVNDMLFRGCPL---DEITYNGLIKALCNA-----GAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT-RKA 571 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~ 571 (681)
...|...+++.++. .| +...|..+...|.+. |+.++|.+.|+++++.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56777778887776 33 366788888888884 89999999999999864432477777888888884 889
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHH
Q 040136 572 NTALEFLRDMIHRGLT--PDIVTYNSL 596 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~--p~~~~~~~l 596 (681)
++|.+.+++.+..... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999886555 555444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.11 Score=39.98 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 554 SSISCNILINGLCRTRKANTALEFLRDMIHRG------LTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 624 (681)
+..-+..++..+...|+++.|...++...+.. -.+...++..|..++.+.|++++|+.+++++.+. .|+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCC
Confidence 44455566777777777777777777766531 1223456666677777777777777777777663 454
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.12 Score=39.83 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKG------IKPSSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
+..-+..|+..+.+.|+++.|..+|+.+.+.- -.+....+..+..++.+.|+++.|+..++++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44455566666777777777777777666531 112345666677777777777777777777765
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.61 E-value=3.4 Score=45.14 Aligned_cols=177 Identities=12% Similarity=0.023 Sum_probs=98.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 493 HAFLRRGSLHEAHKLVNDMLFRGCPLDEITY--NGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK 570 (681)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 570 (681)
-++...|+.+.+..+++.+.... .|....- .++.-+|+..|+......++..+.+. ...++.....+.-++...|+
T Consensus 532 LGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSS
T ss_pred HHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCC
Confidence 34446788888888888877642 2222211 13344566778877777788888764 22234434444445556677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--C-------C
Q 040136 571 ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI-QEALNLFDKLQAEGIYPDAVTYNTLISWHFKE--G-------L 640 (681)
Q Consensus 571 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g-------~ 640 (681)
.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|+..+..+.. .+|..+-...+.++... | +
T Consensus 610 ~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 610 YTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp CSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 777777777666542 34444333444444445543 678888888875 45555444444444333 2 3
Q ss_pred hhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCc
Q 040136 641 FDDAFLILHKGVAN-GFVPNDATWYILVRNLVKEIN 675 (681)
Q Consensus 641 ~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g~ 675 (681)
....++.+...... .-.++...-..+..++...|.
T Consensus 686 va~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 686 VADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 33444444444432 223445555667777776664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.65 Score=36.70 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK 552 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 552 (681)
+.......++.....|.-++-.+++.++... .+|++.....+..+|.+.|+..+|.+++.++-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4455566667777778888888888776543 4677777777888888888888888888888777754
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.5 Score=39.88 Aligned_cols=130 Identities=17% Similarity=0.128 Sum_probs=91.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 492 IHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKA 571 (681)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (681)
.....+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34456889999999998765 4788999999999999999999999988753 23444456668888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 572 NTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKG 651 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 651 (681)
+.-.++-+.....| -++.-..++...|+++++++++.+.-+ .|... -.....|..+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 77766666655543 245556667788999999999865432 22211 1122356777888887766
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.00055 Score=66.97 Aligned_cols=224 Identities=16% Similarity=0.118 Sum_probs=145.5
Q ss_pred HHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 040136 185 FRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHA 264 (681)
Q Consensus 185 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 264 (681)
+..|..+..+....++..+|++.| ++. -|...|..++.+..+.|.+++-.+.+....+.. .++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 456778888888888888887666 333 256678888888888888888888877766553 334455678888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 040136 265 LSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEA 344 (681)
Q Consensus 265 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 344 (681)
|++.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+. -|.-|..++.+.|++..|
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHH
Confidence 888888765444332 4666666677777777777777766665432 223344445555665555
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040136 345 RALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCE 424 (681)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 424 (681)
.+.-.+. .++.+|..+-.+|...+.+.-|.-.-...+....- ...++..|...|.+++-+.+++.-.... .
T Consensus 190 VdaArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade------L~elv~~YE~~G~f~ELIsLlEaglglE-r 260 (624)
T 3lvg_A 190 VDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE------LEELINYYQDRGYFEELITMLEAALGLE-R 260 (624)
T ss_dssp TTTTTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC------CSGGGSSSSTTCCCTTSTTTHHHHTTST-T
T ss_pred HHHHHhc--CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH------HHHHHHHHHhCCCHHHHHHHHHHHhCCC-c
Confidence 4432221 56677888888888888777665522333332221 2235666788888888888888776431 3
Q ss_pred cCHhhHHHHHHHHHhcC
Q 040136 425 PNIVTYTILVDGFCKEG 441 (681)
Q Consensus 425 ~~~~~~~~ll~~~~~~g 441 (681)
....+|+.|.-.|++..
T Consensus 261 AHmGmFTELaILYsKY~ 277 (624)
T 3lvg_A 261 AHMGMFTELAILYSKFK 277 (624)
T ss_dssp CCHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 45677888888887763
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.23 Score=39.20 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 588 PDIVTYNSLINGLCKMGCIQE---ALNLFDKLQAEGIYP-D-AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
++..+-..+.+++.++.+... ++.+++.+...+ .| + ....-.|.-++.+.|++++|+++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444445555555444333 555555554432 12 1 12223344455555555555555555555
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.12 E-value=1.3 Score=37.39 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVND 510 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 510 (681)
+...|..|.......|+++-|.+.|..
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 444555555555555555555555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.13 Score=47.32 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh-cC
Q 040136 536 VDKGLGLFEEMMRKGIKPS---SISCNILINGLCRT-----RKANTALEFLRDMIHRGLTP--DIVTYNSLINGLCK-MG 604 (681)
Q Consensus 536 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~-~g 604 (681)
...|...++++++. .|+ -..|..+...|... |+.++|.+.|++.++. .| +..++....+.++. .|
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 45566666666664 344 34566666666663 6777777777777663 34 24555556666665 36
Q ss_pred CHHHHHHHHHHHHHC
Q 040136 605 CIQEALNLFDKLQAE 619 (681)
Q Consensus 605 ~~~~A~~~~~~~~~~ 619 (681)
+.++|.+.+++.+..
T Consensus 255 d~~~a~~~L~kAL~a 269 (301)
T 3u64_A 255 NRAGFDEALDRALAI 269 (301)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHcC
Confidence 677777777777664
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.00021 Score=69.79 Aligned_cols=221 Identities=12% Similarity=0.041 Sum_probs=115.2
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHH
Q 040136 113 TFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVL 192 (681)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 192 (681)
.+.+|+.+..+....+...+|.+-| ++.+ +++.|..++.+..+.|.+++-+..+....+. ..++..=+.++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHH
Confidence 4445666666666666555544322 2222 4455666666666666666666666554421 22333335666
Q ss_pred HHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 040136 193 DVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVS 272 (681)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 272 (681)
-+|++.|+..+-.+++ . .||..-...+..-|...|.++.|.-+|..+.. |..|...+.+.|++.
T Consensus 124 ~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 6666666655433322 1 24555555566666666666666655554432 222333444555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcC
Q 040136 273 EALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIP 352 (681)
Q Consensus 273 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 352 (681)
.|.+.-++ ..++.||..+-.+|...+.+..|.-+--.++-..- -...++..|-..|-+++-+.+++.-.
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhad-----eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD-----ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS-----CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 55443322 23556677777777777766666554444432211 11224445566666666666665543
Q ss_pred C---CChHHHHHHHHHHHhc
Q 040136 353 S---ANVVLLNTVINGYVIS 369 (681)
Q Consensus 353 ~---~~~~~~~~l~~~~~~~ 369 (681)
. .....|+.|.-.|.+-
T Consensus 257 glErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 257 GLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TSTTCCHHHHHHHHHHHHSS
T ss_pred CCCchhHHHHHHHHHHHHhc
Confidence 3 4445555555555544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.2 Score=39.51 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=60.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCH
Q 040136 532 NAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANT---ALEFLRDMIHRGLTP--DIVTYNSLINGLCKMGCI 606 (681)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 606 (681)
.......+.+.|......|. ++..+-..+..++.+..+... ++.+++++...+ .| .....-.|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 33445566666666666554 677777777888888876655 888888877653 23 223344556678888888
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 040136 607 QEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 607 ~~A~~~~~~~~~~~~~p~ 624 (681)
++|.++++.+++. .|+
T Consensus 91 ~~A~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 91 EKALKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHHh--CCC
Confidence 8888888888884 665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.54 Score=38.09 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 603 MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNL 670 (681)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 670 (681)
.+|.++|.++|+.+++.+-.- ..+|......-.+.|+++.|.+++.+.+..+.. +.......++.+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl 138 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNL 138 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhh
Confidence 356666677766665542122 555666666666677777777777777664422 344444444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.66 Score=37.62 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=55.3
Q ss_pred CCCHHhHHHHHHHHHhcCCc------CcHHHHHHHHHHCCCCCChh-hHHHHHHH------HHhcCChhHHHHHHHHHHh
Q 040136 182 QPTFRSYNVVLDVLVAGNCH------KVAPNLFYDMLSKGISPTVY-TFGVVMKA------LCMVNEVDSACSLLRDMTK 248 (681)
Q Consensus 182 ~~~~~~~~~ll~~~~~~~~~------~~A~~~~~~m~~~~~~p~~~-~~~~ll~~------~~~~g~~~~A~~~~~~~~~ 248 (681)
+-|..+|-..+..+-+.|++ ++.+++|++.... ++|+.. .+...+.. +...+++++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44555666666666655666 5555666665553 344321 11111111 1223667777777777655
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 040136 249 HGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMG 285 (681)
Q Consensus 249 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 285 (681)
.+ +-=...|......-.++|++..|.+++......+
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 42 2225555555555666777777777777776665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.40 E-value=7.2 Score=42.64 Aligned_cols=391 Identities=12% Similarity=0.050 Sum_probs=190.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCC---c
Q 040136 257 VYQTLIHALSKSNRVSEALMLLEEMILMGCTSDV-QTFNDVIHGLCKVNRIHEAAKLVDRMLVRG-------FTPD---D 325 (681)
Q Consensus 257 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~---~ 325 (681)
-|..+++++.+.++.+.+.++|.++.+. .|. ..|. +.-.+.+.+.-.--.++.+.+.... +--+ .
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~~---~d~l~ayQ-iAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~ILsg~~~~ 307 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKEE---NDEGLSAQ-IAFDLVSSASQQLLEILVTELTAQGYDPALLNILSGLPTC 307 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHHTTSHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhc---ccHHHHHH-HHHHHhcccchHHHHHHHHhccccchhHHHHHHhCCCChH
Confidence 4677788888899999999999988742 232 3333 2222333333222222222221110 0001 1
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHhhcCC-CChH--HHHHHHHHHHhcCCHHHHH-HHHHHHHHhCCCCCCHHHHHHH-HH
Q 040136 326 ITYGVLMHGLCRTGRVDEARALLNKIPS-ANVV--LLNTVINGYVISGRFDEAK-AIFYDSMLSVGCIPDVFTFNIL-IH 400 (681)
Q Consensus 326 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~p~~~~~~~l-l~ 400 (681)
..|..++.-. +.-+...-..+ +...+ .+.. +-.++..+++..|-..+.+ ....+++.+. .+-.-+.++ .-
T Consensus 308 ~Lyl~FL~~~-n~~d~~~l~~~-K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~---~~~~k~sA~aSL 382 (963)
T 4ady_A 308 DYYNTFLLNN-KNIDIGLLNKS-KSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA---QNWAKFTATASL 382 (963)
T ss_dssp HHHHHHHHHH-CCCCHHHHHHH-HHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC---CTHHHHHHHHHH
T ss_pred HHHHHHHHhc-cccchhhHHHH-HhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhcc---chHHHHHHHHHh
Confidence 1222222110 11122211121 22111 2221 2334566677666544331 1011222221 122122222 23
Q ss_pred HHHhcCChhHHHHHHHHHHhcC--CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC---c-----------
Q 040136 401 GLCKQRRFGSALELVNAMAVKG--CEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLS--LN---T----------- 462 (681)
Q Consensus 401 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~---~----------- 462 (681)
+....|+.++++.++......+ -.+.+..-..+.-+....|..+++..++...+...-. -. .
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4566788888877776655421 0112223333334455566656677766665543210 00 0
Q ss_pred ----cccHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 040136 463 ----GDRIEEALGLYQDMLLEGVTANT--VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAV 536 (681)
Q Consensus 463 ----~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 536 (681)
...-+++.+.+..+....-. .. ..-.++...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 11224455555555543211 11 111233344556778777788887776542 22222223333344567888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 537 DKGLGLFEEMMRKGIKPSSISCN---ILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLF 613 (681)
Q Consensus 537 ~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (681)
+.+..+.+.+... ..| ..-|. .+.-+|+..|+.....++++.+.+. ...+......+.-++...|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 8888888887764 122 22222 3455677888887777788888864 2223333333333455567777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 614 DKLQAEGIYPDAVTYNTLISWHFKEGLF-DDAFLILHKGVANGFVPNDATWYI 665 (681)
Q Consensus 614 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~ 665 (681)
+.+.+.+ .|...--..+.-+....|.. .+|...+..+.. .+|..+-..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~ 666 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQA 666 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHH
Confidence 7666643 44444333444444555544 578888888874 455554433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.28 E-value=2.5 Score=33.51 Aligned_cols=68 Identities=13% Similarity=-0.038 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 040136 589 DIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFV 657 (681)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 657 (681)
+...++.-+..+..+|.-+.-.++...+... .+|+......+..+|.+.|+..+|.++++++-++|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4445666778888889988888888886543 4788888889999999999999999999999999864
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.98 E-value=0.56 Score=37.16 Aligned_cols=77 Identities=16% Similarity=0.057 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 040136 586 LTPDIVTYNSLINGLCKMGCI---QEALNLFDKLQAEGIYP-D-AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
-.|+..+--.+.+++.++.+. .+++.+++.+.+.+ | . ...+-.|.-++.+.|++++|+++.+.+++ +.|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 445666666677777766643 45777777777653 3 2 33455566678888888888888888886 56665
Q ss_pred HHHHHH
Q 040136 661 ATWYIL 666 (681)
Q Consensus 661 ~~~~~l 666 (681)
.-...|
T Consensus 112 ~QA~~L 117 (134)
T 3o48_A 112 KQVGAL 117 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.76 E-value=3.6 Score=47.22 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 040136 256 VVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDV----QTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVL 331 (681)
Q Consensus 256 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (681)
.-|..++..+-+.+.++.+.++-+...+.....+. ..|..+.+.+...|++++|...+-.+.....+ ......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 34667777888888888888777766654322221 24677788888888888888888777654332 3456667
Q ss_pred HHHHHhcCCHHHHH
Q 040136 332 MHGLCRTGRVDEAR 345 (681)
Q Consensus 332 ~~~~~~~g~~~~A~ 345 (681)
+...|..|..+.-.
T Consensus 978 V~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 978 VNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHCCHHHHH
T ss_pred HHHHHhCCChhhhh
Confidence 77777777665433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.75 E-value=7.2 Score=39.07 Aligned_cols=51 Identities=12% Similarity=0.014 Sum_probs=27.6
Q ss_pred CChHHHHHHHHHcHhh----cCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 040136 163 GVPGQATRLLLDMKSV----YGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLS 213 (681)
Q Consensus 163 g~~~~A~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 213 (681)
|+++.|++.+..+.+. ............++..+...|+++...+.+.-+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666676665544421 11233344555666666666666666555554443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.46 E-value=3.5 Score=33.12 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 587 TPDIVTYNSLINGLCKMGCI---QEALNLFDKLQAEGIYPDAV-TYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
.|+..+--.+.+++.++.+. .+++.+++.+...+ +.+.. ..-.|.-++.+.|++++|+++.+.+++ +.|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 45565555666666666543 45666777766642 11232 334455567777777777777777776 556543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.82 Score=48.84 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=29.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040136 598 NGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGLFDDAFLILHKG 651 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 651 (681)
+.|...|+++.|+++.++.+.. .|+ -.+|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3344556666666666666653 333 456666666666666666666555554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.76 E-value=12 Score=37.56 Aligned_cols=171 Identities=12% Similarity=0.096 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCCHHHHHH--HHHHHHH--CC-CC
Q 040136 482 TANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKAL----CNAGAVDKGLG--LFEEMMR--KG-IK 552 (681)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~--~~~~~~~--~~-~~ 552 (681)
.........++..|...|+++...+.+.-+....... ......++..+ ......+.... +.+.... .| +-
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIF 131 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchH
Confidence 3456778888999999999999888777666542222 22223333332 22332222111 1111111 11 11
Q ss_pred C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C
Q 040136 553 P---SSISCNILINGLCRTRKANTALEFLRDMIHR--GLTPD---IVTYNSLINGLCKMGCIQEALNLFDKLQAE----G 620 (681)
Q Consensus 553 p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~ 620 (681)
. .......|...+...|++.+|.+++.++... |.... ...+...++.|...+++..|..+++++... .
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 1 1233456788899999999999999998753 22221 245666778889999999999999887532 2
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 621 IYPD--AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 621 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2232 23566777888889999999988888875
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.10 E-value=7.5 Score=44.55 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 221 YTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNS----VVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDV 296 (681)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 296 (681)
.-|..++..+-+.|.++.+.+.-....+...+.+. ..|..+.+.+...|++++|...+-.+..... -...+..|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34677888888889999888887776654322221 2678889999999999999999988876543 35667778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhc------CCCChHHHHHHHHHHHhcC
Q 040136 297 IHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKI------PSANVVLLNTVINGYVISG 370 (681)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~l~~~~~~~g 370 (681)
+..+|..|..+.-.. -. -.|..++..+++..- ....+.-|..|-..+...|
T Consensus 978 V~~lce~~~~~~L~~-------lp----------------f~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~ 1034 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLN-------YS----------------MPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQ 1034 (1139)
T ss_dssp HHHHHHHCCHHHHHH-------HT----------------TTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhC-------CC----------------CccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccC
Confidence 887787776554332 10 012222222222111 1122334566666677788
Q ss_pred CHHHHHHHHHHHHHh
Q 040136 371 RFDEAKAIFYDSMLS 385 (681)
Q Consensus 371 ~~~~a~~~~~~~~~~ 385 (681)
++..|-.++|+...+
T Consensus 1035 dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 1035 NYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 888888877776654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.89 E-value=1.5 Score=43.18 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE-----GIYPDAV 626 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~ 626 (681)
....++..+...|++++|+..+..+... .+.+...|..++.++.+.|+..+|++.|+.+.+. |+.|+..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3344555555666666666666665553 2335556666666666666666666666655442 5555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.42 E-value=1.3 Score=47.22 Aligned_cols=128 Identities=14% Similarity=0.099 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcC-CHHHHHHHHHHHHHC------CCCC-CH-
Q 040136 487 TYNTLIHAFLRRGS-LHEAHKLVNDMLFRGCPLDEIT-YNGLIKALCNAG-AVDKGLGLFEEMMRK------GIKP-SS- 555 (681)
Q Consensus 487 ~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g-~~~~A~~~~~~~~~~------~~~p-~~- 555 (681)
....++..+...++ .+.|..+++++.+.. |..... ...++..+.+.+ +--+|.+++.+.++. ...+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~-p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD-PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 34556666666666 688999999988873 222222 223333333333 223455555554431 1111 11
Q ss_pred ---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 556 ---------ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKL 616 (681)
Q Consensus 556 ---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (681)
.....=...+...|+++-|+++-++.... .+-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222244466789999999999999885 2335789999999999999999999998877
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.34 E-value=1.6 Score=32.43 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 571 ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 571 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
.-+..+-++.+...++.|++.+..+.+.+|.+.+++..|+++|+.+..+ +.+...+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 4455566666666667777777777777777777777777777777665 233344555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.75 E-value=3 Score=41.02 Aligned_cols=57 Identities=14% Similarity=0.076 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 525 GLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMI 582 (681)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 582 (681)
.++..+...|++++|...+..+.... +-+...+..+|.++.+.|+..+|++.|+++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444445555555555555555432 2244455555555555555555555555543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=88.71 E-value=25 Score=36.71 Aligned_cols=45 Identities=13% Similarity=0.016 Sum_probs=20.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 040136 332 MHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKA 377 (681)
Q Consensus 332 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 377 (681)
+..+.+.+++......+.. ...+...--....+....|+..+|..
T Consensus 79 l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~ 123 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQ 123 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHH
Confidence 4444555555555554443 22233333334444444555444444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.44 E-value=5.1 Score=31.72 Aligned_cols=71 Identities=17% Similarity=0.107 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 552 KPSSISCNILINGLCRTRKA---NTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 552 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 624 (681)
.|+..+--.+..++.+..+. .+++.+++++...+..-....+-.|.-++.+.|++++|.++.+.+.+ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 45566555666666666543 35666666666543111233444555566777777777777777776 3554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.89 E-value=2.9 Score=31.06 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 501 LHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 501 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
.-+..+-++.+.....-|++.+..+.+.+|.+.+++..|.++|+.+..+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555555443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.47 E-value=3.4 Score=32.58 Aligned_cols=60 Identities=10% Similarity=0.216 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 573 TALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLIS 633 (681)
Q Consensus 573 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 633 (681)
+..+-++.+...++.|++.+...-+.+|.+.+|+..|+++|+-...+ +.+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44555566666677777777777777787888888888877777765 3344445655543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.26 E-value=12 Score=30.14 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040136 552 KPSSISCNILINGLCRTRK---ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD 624 (681)
Q Consensus 552 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 624 (681)
.|+..+--.+..++.+..+ ..+++.+++++...+..-.....-.|.-++.+.|++++|.++.+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 4556665566666666654 335666666666532111223333455566677777777777777776 3554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.96 E-value=23 Score=33.19 Aligned_cols=109 Identities=6% Similarity=0.010 Sum_probs=59.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHH---HHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 040136 331 LMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAI---FYDSMLSVGCIPDVFTFNILIHGLCKQRR 407 (681)
Q Consensus 331 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~---~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 407 (681)
+..-|.+.+++++|++++.. -...+.+.|+...|.++ +.+...+.+.+++......++..+.....
T Consensus 39 l~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~ 107 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDP 107 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 33446666666666666433 12234455555554441 34555566777777777777766554321
Q ss_pred hh-HHHHHHHHHHh----cC--CCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 040136 408 FG-SALELVNAMAV----KG--CEPNIVTYTILVDGFCKEGQLEKANIII 450 (681)
Q Consensus 408 ~~-~A~~~~~~~~~----~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 450 (681)
-+ .-.++++.+.. .| ..-++.....+...|.+.|++.+|...|
T Consensus 108 ~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 108 SEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 11 12233333332 11 1235667777777888888887776655
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.44 E-value=35 Score=33.25 Aligned_cols=168 Identities=14% Similarity=0.030 Sum_probs=95.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHH---
Q 040136 490 TLIHAFLRRGSLHEAHKLVNDMLFRGCPLD-----EITYNGLIKALCNAGAVDKGLGLFEEMMRK--GIKPSSISCN--- 559 (681)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~--- 559 (681)
.++..|...|++.+|.+++..+.+.--..| ..++..-+..|...+++.++...+..+... .+.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 578889999999999999888876411212 234555567788899999999999887653 2324443322
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHHHHC-C-C-CCC---HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 040136 560 -ILINGLC-RTRKANTALEFLRDMIHR-G-L-TPD---IVTYNSLINGLCKMGCIQEALNLFD-KLQAEGIYPDAVTYNT 630 (681)
Q Consensus 560 -~l~~~~~-~~g~~~~A~~~~~~~~~~-~-~-~p~---~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~p~~~~~~~ 630 (681)
.-+-.+. ..+++.+|...|-+..+. . . .|. ...|..| .+. -.++..+-..++. +....-..|+...+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aL-l~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKI-MLGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHH-HTTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHH-HcCCHHHHHHHhccccccccCCccHHHHHH
Confidence 2233345 788999988887766531 1 1 111 1223222 222 2233333333322 2212112455555666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 040136 631 LISWHFKEGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
++.++ ..+++.+...+++.... .+..|..
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 66654 55677777777766543 3555654
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=83.39 E-value=21 Score=37.50 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=18.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHcH
Q 040136 154 LIMKYYGRGGVPGQATRLLLDMK 176 (681)
Q Consensus 154 ~l~~~~~~~g~~~~A~~~~~~~~ 176 (681)
.++-.+.|+|.+++|.++.++..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTG
T ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Confidence 45666779999999999887776
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.24 E-value=11 Score=32.36 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040136 568 TRKANTALEFLRDMIHRGLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP 623 (681)
Q Consensus 568 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 623 (681)
.+...++.++|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3335566677776666655432 4455666666666677777777777766665555
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.65 E-value=30 Score=31.31 Aligned_cols=115 Identities=16% Similarity=0.173 Sum_probs=69.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCH
Q 040136 494 AFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK--PSSISCNILINGLCRTRKA 571 (681)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~ 571 (681)
...+.|++++|++.+..-++.. |.|......|+..+|-.|++++|..-++.+.+.... |....|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 3567788888888888777763 778888888888888888888888888887775221 112234444332
Q ss_pred HHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 040136 572 NTALEFLRDMIHRGLTP-----DIVTYNSLINGLC--KMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 619 (681)
...=.+...-+-.| ...-...+++++. ..|+.++|.++-.++.+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 12222222221111 1223344455443 457888887777777653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.14 E-value=18 Score=30.02 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC
Q 040136 329 GVLMHGLCRTGRVDEARALLNKIPS 353 (681)
Q Consensus 329 ~~l~~~~~~~g~~~~A~~~~~~~~~ 353 (681)
-.+..+|.+.+++++|+.+++.++.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3456667777777777777776654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.18 E-value=6.9 Score=30.89 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=21.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 540 LGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
.+-++.+...++.|++......+.+|.+.+++..|+++|+-.+.
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444444445555555555555555555555555554443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.13 E-value=10 Score=28.02 Aligned_cols=79 Identities=6% Similarity=0.024 Sum_probs=35.2
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHH
Q 040136 128 KEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNL 207 (681)
Q Consensus 128 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 207 (681)
...++|..+-+.+...+. .+.+-..-+..+...|++++|..+.+..- .||...|-++-. .+.|..+++...
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 344445554444444432 11111222334455555555555554433 555555544433 234444444444
Q ss_pred HHHHHHCC
Q 040136 208 FYDMLSKG 215 (681)
Q Consensus 208 ~~~m~~~~ 215 (681)
+.++...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 44444443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.02 E-value=12 Score=37.19 Aligned_cols=98 Identities=11% Similarity=-0.087 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHH--HH
Q 040136 522 TYNGLIKALCNAGAVDKGLGLFEEMMRK--GIKPSSISCNILINGLCRTRKANTALEFLRDMIHR---GLTPDIVT--YN 594 (681)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~--~~ 594 (681)
+...+...|.+.|++++|.+.+.++... +...-...+-.+++.+...+++..+...++++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667888888899999999998888875 33334567777888888888888888888887542 22232211 01
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 595 SLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
.-+-.+...+++.+|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112234567888887777776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 681 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 2e-04
Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 9/185 (4%)
Query: 449 IINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLV 508
++ + G L + A+ Y L + V + L + +G + A
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRAL-SLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 509 NDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRT 568
+ P Y L AL G+V + + +R + S N L N
Sbjct: 261 RRAI-ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQ 318
Query: 569 RKANTALEFLRDMIHRGLTPDIV-TYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AV 626
A+ R + + P+ +++L + L + G +QEAL + + A I P A
Sbjct: 319 GNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKE--AIRISPTFAD 374
Query: 627 TYNTL 631
Y+ +
Sbjct: 375 AYSNM 379
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 681 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.17 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.15 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.02 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.95 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.91 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.9 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.57 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.51 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.45 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.4 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.4 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.36 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.3 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.28 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.23 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.22 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.19 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.16 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.15 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.07 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.04 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.03 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.92 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.82 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.75 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.73 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.73 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.72 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.66 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.63 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.61 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.49 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.49 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.38 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.36 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.18 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.72 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.71 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.46 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.14 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.89 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.69 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.43 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.23 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.39 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.2 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.15 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.11 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 81.83 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.1e-20 Score=189.73 Aligned_cols=382 Identities=14% Similarity=0.077 Sum_probs=266.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 226 VMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNR 305 (681)
Q Consensus 226 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (681)
+...+.+.|++++|.+.++++.+.. |.+..++..+..+|.+.|++++|.+.+++..+.. +.+..++..+...+...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 3455667788888888888777664 4456777777777778888888888887777654 4456677777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040136 306 IHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLS 385 (681)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (681)
+++|+..+......... +............. .+....+.. .......
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------------------------~~~~~~~~~-~~~~~~~ 129 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVA-------------------------------AGDMEGAVQ-AYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-------------------------------HSCSSHHHH-HHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccc-------------------------------ccccccccc-ccccccc
Confidence 77777777777665322 22222222222222 222222222 1111111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccc
Q 040136 386 VGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDR 465 (681)
Q Consensus 386 ~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 465 (681)
.. .................+....+...+....... +.+...+..+...+...|++++|...+.+.++..
T Consensus 130 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------- 199 (388)
T d1w3ba_ 130 YN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------- 199 (388)
T ss_dssp HC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------
T ss_pred cc-cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC--------
Confidence 11 2233344445555666677777777776666552 3345667777777888888888888887776643
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040136 466 IEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEE 545 (681)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 545 (681)
+.+...+..+...+...|++++|...++...... +.+...+..+...+.+.|++++|+..|++
T Consensus 200 ----------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 262 (388)
T d1w3ba_ 200 ----------------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp ----------------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2256677788888888888888888888887764 55677777888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 040136 546 MMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD- 624 (681)
Q Consensus 546 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 624 (681)
+++... -+..++..+...+...|++++|++.++..... .+.+...+..+..++...|++++|+..++++++. .|+
T Consensus 263 al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~ 338 (388)
T d1w3ba_ 263 AIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEF 338 (388)
T ss_dssp HHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTC
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 887643 25677888888888888888888888888775 3456777888888888888999999998888874 454
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCc
Q 040136 625 AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPN-DATWYILVRNLVKEIN 675 (681)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~ 675 (681)
..++..++.+|.+.|++++|...++++++ +.|+ ...|..+...+.+.||
T Consensus 339 ~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 339 AAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 66788888888889999999999998887 4564 5677888888877765
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.3e-20 Score=187.41 Aligned_cols=383 Identities=14% Similarity=0.069 Sum_probs=283.4
Q ss_pred HHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 040136 191 VLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNR 270 (681)
Q Consensus 191 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 270 (681)
+...+.+.|++++|++.|+++++... -+...+..+..++.+.|++++|...++++.+.. |.+..++..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 45667889999999999999998742 257788889999999999999999999999875 5567899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhh
Q 040136 271 VSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNK 350 (681)
Q Consensus 271 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 350 (681)
+++|.+.+....+.. +.+..............+....+............. ...............+....+...+.+
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHH
Confidence 999999999998765 445555555555555566656655555554443222 233333334444444444444443322
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhH
Q 040136 351 IPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTY 430 (681)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 430 (681)
..... +-+...+..+...+...|+++.|...++...+.. +.+...+
T Consensus 161 --------------------------------~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 206 (388)
T d1w3ba_ 161 --------------------------------AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAY 206 (388)
T ss_dssp --------------------------------HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred --------------------------------hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHH
Confidence 22211 2245566666777777888888888887777653 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 431 TILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVND 510 (681)
Q Consensus 431 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 510 (681)
..+...+...|++++|...+......+ +.+...+..+...+.+.|++++|...+++
T Consensus 207 ~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 262 (388)
T d1w3ba_ 207 INLGNVLKEARIFDRAVAAYLRALSLS------------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhhhhccccHHHHHHHHHHhHHHh------------------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777888888888888888887776643 23666777788888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 511 MLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDI 590 (681)
Q Consensus 511 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 590 (681)
+.+.. |.+..++..+...+...|++++|...++.+.... +.+...+..+...+...|++++|++.+++.++.. +-+.
T Consensus 263 al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 339 (388)
T d1w3ba_ 263 AIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFA 339 (388)
T ss_dssp HHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 88763 5577788888888888899999999888888763 3467788888888888999999999998888742 2346
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGL 640 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 640 (681)
.++..+..++.+.|++++|+..|+++++ +.|+ ...|..++.+|.+.|+
T Consensus 340 ~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 340 AAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 7788888889999999999999999887 4564 6678888888877765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.7e-12 Score=124.16 Aligned_cols=120 Identities=13% Similarity=0.003 Sum_probs=76.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040136 531 CNAGAVDKGLGLFEEMMRKGI-KPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEA 609 (681)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 609 (681)
...+.+.+|...|.++++... ..+...+..+...+...|++++|+..+++..... +-+...|..+..++...|++++|
T Consensus 147 ~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 225 (323)
T d1fcha_ 147 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 225 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhH
Confidence 334455666666666655422 2245566666667777777777777777766542 22456666677777777777777
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 610 LNLFDKLQAEGIYP-DAVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 610 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
++.|+++++. .| +..+|..++.+|.+.|++++|+..|+++++
T Consensus 226 ~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 226 VAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777664 33 355666677777777777777777777665
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=5.2e-12 Score=122.13 Aligned_cols=245 Identities=11% Similarity=0.009 Sum_probs=161.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040136 225 VVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVN 304 (681)
Q Consensus 225 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 304 (681)
.....+.+.|++++|...|+++.+.. |.+..+|..+..++...|++++|...+++..+.. +-+...+..+...+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34555667788888888888877765 4456777777778888888888888887777653 345667777777777888
Q ss_pred CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 305 RIHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSML 384 (681)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (681)
++++|.+.++.+.... |+............... +.......+..+...+...+|.+ .+....
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~a~~-~~~~al 163 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGA---------------GLGPSKRILGSLLSDSLFLEVKE-LFLAAV 163 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC------------------------------CTTHHHHHHHHHHHHHH-HHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhhhc---------------ccccchhhHHHHHHhhHHHHHHH-HHHHHH
Confidence 8888888887776542 22111000000000000 00000011122333445566666 443333
Q ss_pred -hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 040136 385 -SVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTG 463 (681)
Q Consensus 385 -~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 463 (681)
......+...+..+...+...|++++|...++...... +-+...|..+..+|...|++++|...|+++++..
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------ 236 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ------ 236 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh------
Confidence 33334456777788888888999999999999887763 3357778888889999999999998888877653
Q ss_pred ccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040136 464 DRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR 514 (681)
Q Consensus 464 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (681)
+-+..+|..+..+|.+.|++++|++.|++.++.
T Consensus 237 ------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 237 ------------------PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------------hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 226677888888999999999999999887763
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=8.8e-09 Score=100.28 Aligned_cols=299 Identities=13% Similarity=0.065 Sum_probs=203.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----Cc-CHhhHHH
Q 040136 362 VINGYVISGRFDEAKAIFYDSMLSVGCIPD----VFTFNILIHGLCKQRRFGSALELVNAMAVKGC----EP-NIVTYTI 432 (681)
Q Consensus 362 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~----~~-~~~~~~~ 432 (681)
....+...|++++|++ +++.........+ ...+..+...+...|++++|...++...+... .+ ....+..
T Consensus 18 rA~~~~~~g~~~~A~~-~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAER-LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHTTCHHHHHH-HHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHH-HHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3455677788888888 6665554332211 23566677788899999999999988765311 11 1345566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 433 LVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDML 512 (681)
Q Consensus 433 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 512 (681)
+...+...|++..+...+.+.... ...............+..+...+...|+++.+...+....
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~----------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~ 160 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQL----------------INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 160 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------hHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 677788899999999888776542 1111111111122456667788899999999999998877
Q ss_pred hCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 513 FRG----CPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK--GIKPS----SISCNILINGLCRTRKANTALEFLRDMI 582 (681)
Q Consensus 513 ~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 582 (681)
... .......+..+...+...++...+...+.+.... ..... ...+..+...+...|++++|...+++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (366)
T d1hz4a_ 161 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240 (366)
T ss_dssp HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 642 2233455666677788899999999988877653 11111 2345667778889999999999999877
Q ss_pred HCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 583 HRGLTP---DIVTYNSLINGLCKMGCIQEALNLFDKLQAE----GIYPD-AVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 583 ~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
...... ....+..+..++...|++++|...++++... +..|+ ..++..+..+|...|++++|.+.++++++.
T Consensus 241 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 642222 2345667888999999999999999988753 44444 457788889999999999999999988763
Q ss_pred ----CCCC----CHHHHHHHHHHHHhcCccc
Q 040136 655 ----GFVP----NDATWYILVRNLVKEINME 677 (681)
Q Consensus 655 ----g~~~----~~~~~~~ll~~~~~~g~~~ 677 (681)
|... .......++..+...++.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 351 (366)
T d1hz4a_ 321 ANRTGFISHFVIEGEAMAQQLRQLIQLNTLP 351 (366)
T ss_dssp HHHHCCCHHHHTTHHHHHHHHHHHHHTTCSC
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3221 2234455666666666554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=5.8e-09 Score=99.14 Aligned_cols=248 Identities=11% Similarity=0.065 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCccccHHHHHH
Q 040136 393 FTFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEG-QLEKANIIINEMLAKGLSLNTGDRIEEALG 471 (681)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 471 (681)
..++.+...+.+.+.+++|+.+++.+++.. +-+...|+....++...| ++++|+..++.+++..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-------------- 108 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------- 108 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--------------
Confidence 345556666777888889999998888873 335667777777777766 4888888888877753
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 040136 472 LYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI 551 (681)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 551 (681)
+-+..+|..+...+.+.|++++|++.++++++.. |.+..+|..+...+.+.|++++|+..++.+++.++
T Consensus 109 ----------p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p 177 (315)
T d2h6fa1 109 ----------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 177 (315)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred ----------HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC
Confidence 2377888888888899999999999999988874 66888899999999999999999999999988754
Q ss_pred CCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC
Q 040136 552 KPSSISCNILINGLCRTRK------ANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIY-PD 624 (681)
Q Consensus 552 ~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~ 624 (681)
. +...|+.+...+.+.+. +++|++.+.+.++.. +.+...|+.+...+.. ...+++.+.++...+.... .+
T Consensus 178 ~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~ 254 (315)
T d2h6fa1 178 R-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSS 254 (315)
T ss_dssp T-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCC
T ss_pred c-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCC
Confidence 3 66778777777666655 578888888888752 3366777766665544 4467788888887764222 23
Q ss_pred HHHHHHHHHHHHhc--CC-------hhHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 040136 625 AVTYNTLISWHFKE--GL-------FDDAFLILHKGVANGFVPND-ATWYILVRNL 670 (681)
Q Consensus 625 ~~~~~~l~~~~~~~--g~-------~~~A~~~~~~~~~~g~~~~~-~~~~~ll~~~ 670 (681)
...+..++..|... +. +++|..++..+.+. +.|-. .-|..+.+.+
T Consensus 255 ~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~-~DpiR~~yw~~~~~~l 309 (315)
T d2h6fa1 255 PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE-KDTIRKEYWRYIGRSL 309 (315)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 45566677766443 33 34455555544432 33422 3455555444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=1.3e-08 Score=96.59 Aligned_cols=188 Identities=12% Similarity=0.115 Sum_probs=151.5
Q ss_pred ccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040136 464 DRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLF 543 (681)
Q Consensus 464 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 543 (681)
+..+++..+|++..+...+.+...|...+..+.+.|+.+.|..+|+.+++........+|...+..+.+.|+.+.|+.+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34566667777777654555777888889999999999999999999998743333557899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 040136 544 EEMMRKGIKPSSISCNILING-LCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEG-I 621 (681)
Q Consensus 544 ~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 621 (681)
+++++.+.. +...|...+.. +...|+.+.|..+|+.++.. .+.+...|...++.+...|+++.|..+|++.++.. .
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 999987543 44444444433 34568999999999999986 44567889999999999999999999999999863 3
Q ss_pred CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 622 YPD--AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 622 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
.|+ ...|...+..-...|+.+.+..+.+++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443 45788889888899999999999999887
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=6.1e-08 Score=94.11 Aligned_cols=232 Identities=11% Similarity=-0.036 Sum_probs=142.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc----CCCc---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHH
Q 040136 396 NILIHGLCKQRRFGSALELVNAMAVK----GCEP---NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEE 468 (681)
Q Consensus 396 ~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 468 (681)
..+...+...|++..+...+...... +... ....+..+...+...|+++.+...+.........
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--------- 165 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS--------- 165 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh---------
Confidence 34444555666666666666554331 1111 1224445566677778888887777766554211
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 040136 469 ALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFR----GCPL--DEITYNGLIKALCNAGAVDKGLGL 542 (681)
Q Consensus 469 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 542 (681)
.+.......+......+...++...+...+.+.... +..+ ....+..+...+...|++++|...
T Consensus 166 ----------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 235 (366)
T d1hz4a_ 166 ----------YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 235 (366)
T ss_dssp ----------SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHH
Confidence 111223345555666677778888877777665432 1111 123455566677788899999988
Q ss_pred HHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 543 FEEMMRKGIKP---SSISCNILINGLCRTRKANTALEFLRDMIHR----GLTPD-IVTYNSLINGLCKMGCIQEALNLFD 614 (681)
Q Consensus 543 ~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (681)
+.......... ....+..+...+...|++++|.+.+++.... +..|+ ...+..+..+|...|++++|.+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 315 (366)
T d1hz4a_ 236 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 315 (366)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88876643222 2345566788888999999999998887642 33343 3567778888999999999999998
Q ss_pred HHHHC----CCCC----CHHHHHHHHHHHHhcCChhHHHH
Q 040136 615 KLQAE----GIYP----DAVTYNTLISWHFKEGLFDDAFL 646 (681)
Q Consensus 615 ~~~~~----~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 646 (681)
+..+. |... ....+..++..+...++.+++.+
T Consensus 316 ~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 316 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 87663 2211 12234445566666777776654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=8.1e-09 Score=98.14 Aligned_cols=217 Identities=8% Similarity=0.020 Sum_probs=170.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHH
Q 040136 427 IVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRG-SLHEAH 505 (681)
Q Consensus 427 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~ 505 (681)
...++.+...+.+.+.+++|+.+++++++.++ -+...|+....++...| ++++|+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP------------------------~~~~a~~~r~~~l~~l~~~~~eal 98 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA------------------------ANYTVWHFRRVLLKSLQKDLHEEM 98 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT------------------------TCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCC------------------------CChHHHHHHHHHHHHhCcCHHHHH
Confidence 34566677778888899999999998888642 37778898888888876 599999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040136 506 KLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRG 585 (681)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (681)
..++..++.. |-+..+|..+...+.+.|++++|+..++++++.... +...|..++..+...|++++|++.++++++.+
T Consensus 99 ~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~ 176 (315)
T d2h6fa1 99 NYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 176 (315)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence 9999998874 678999999999999999999999999999997543 78999999999999999999999999999963
Q ss_pred CCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-
Q 040136 586 LTPDIVTYNSLINGLCKMGC------IQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVP- 658 (681)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~- 658 (681)
+-+...|+.+..++.+.+. +++|+..+.++++.. +.+...|..+...+.. ...+++.+.++...+....+
T Consensus 177 -p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~ 253 (315)
T d2h6fa1 177 -VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHS 253 (315)
T ss_dssp -TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCC
T ss_pred -CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcC
Confidence 2367788887777766665 678999999999852 3356777777666544 45688888888887632222
Q ss_pred CHHHHHHHHHHHHh
Q 040136 659 NDATWYILVRNLVK 672 (681)
Q Consensus 659 ~~~~~~~ll~~~~~ 672 (681)
+...+..+...+..
T Consensus 254 ~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 254 SPYLIAFLVDIYED 267 (315)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 34455555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=1.7e-08 Score=95.76 Aligned_cols=220 Identities=10% Similarity=0.015 Sum_probs=109.4
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC--------------CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040136 94 VDTSMEIFTWAGSQEGYCHTFDVYYVLIDKLGAN--------------KEFKVIDSVLLQMKEEGIICRESLFILIMKYY 159 (681)
Q Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (681)
.+++..+|+++....+ .++..+...+..+... +..++|..++++.++..++.+...+...+..+
T Consensus 32 ~~Rv~~vyerAl~~~~--~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 32 TKRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3455666777666544 3444544444333221 22345555565555544444455555555566
Q ss_pred HhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCChhH
Q 040136 160 GRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKA-LCMVNEVDS 238 (681)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~ 238 (681)
.+.|+.+.|..+|+++. ..........|...+..+.+.|+.+.|.++|.++++.+.. +...|...... +...|+.+.
T Consensus 110 ~~~~~~~~a~~i~~~~l-~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~ 187 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLL-AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHH-TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcccHHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHH
Confidence 66666666666666655 2111111234555555555556666666666665554321 22223222222 222355555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040136 239 ACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMG-CTSD--VQTFNDVIHGLCKVNRIHEAAKLVDR 315 (681)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (681)
|..+|+.+.+.. +.+...|...+..+...|+.+.|..+|++..... ..|+ ...|...+..-...|+.+.+.+++++
T Consensus 188 a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r 266 (308)
T d2onda1 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666555542 3445555555555556666666666666555432 1221 23455555544555555555555555
Q ss_pred HHH
Q 040136 316 MLV 318 (681)
Q Consensus 316 ~~~ 318 (681)
+.+
T Consensus 267 ~~~ 269 (308)
T d2onda1 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=5.2e-09 Score=96.84 Aligned_cols=219 Identities=11% Similarity=-0.028 Sum_probs=139.9
Q ss_pred hHHHHHHHHHHhcCC-Cc--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCH
Q 040136 409 GSALELVNAMAVKGC-EP--NIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANT 485 (681)
Q Consensus 409 ~~A~~~~~~~~~~~~-~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 485 (681)
+.++.-+++...... .+ ...+|..+..+|.+.|++++|...|++.++.. +-++
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~------------------------p~~~ 71 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR------------------------PDMP 71 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------CCCH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC------------------------CCCH
Confidence 344445555554321 11 23466677778888888888888888887753 2367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGL 565 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (681)
.+|..+..+|.+.|++++|++.|+++++.. |.+..++..+..+|...|++++|...|+..++.... +......+..++
T Consensus 72 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 149 (259)
T d1xnfa_ 72 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAE 149 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHH
Confidence 788888888999999999999999888874 556778888888888899999999999988886432 444444445555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMG----CIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFKEGL 640 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 640 (681)
.+.+..+.+..+........ ++...++ ++..+.... ..+.+...+..... ..|+ ..+|..+...|...|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~ 224 (259)
T d1xnfa_ 150 QKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGD 224 (259)
T ss_dssp HHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCC
Confidence 56666555555555555432 2222222 222222111 12222222222222 1222 3466778888999999
Q ss_pred hhHHHHHHHHHHHCCCCCCH
Q 040136 641 FDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 641 ~~~A~~~~~~~~~~g~~~~~ 660 (681)
+++|.+.|++++. ..|+.
T Consensus 225 ~~~A~~~~~~al~--~~p~~ 242 (259)
T d1xnfa_ 225 LDSATALFKLAVA--NNVHN 242 (259)
T ss_dssp HHHHHHHHHHHHT--TCCTT
T ss_pred HHHHHHHHHHHHH--cCCCC
Confidence 9999999999987 45654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=2.3e-09 Score=103.49 Aligned_cols=232 Identities=9% Similarity=-0.068 Sum_probs=167.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCC
Q 040136 404 KQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQ--LEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGV 481 (681)
Q Consensus 404 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 481 (681)
..|.+++|+..++...+.. +.+...|..+..++...++ +++|...+..+....
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~------------------------ 139 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD------------------------ 139 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC------------------------
Confidence 3445778888888887763 3456677777777766554 778888877776653
Q ss_pred CCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040136 482 TANTVTYN-TLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNI 560 (681)
Q Consensus 482 ~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 560 (681)
+++...+. .....+...+..++|+..++.+++.. |-+..+|+.+..++.+.|++++|...+....+. .|+ ...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~ 213 (334)
T d1dcea1 140 ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELE 213 (334)
T ss_dssp TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHH
T ss_pred chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHH
Confidence 23555544 44467778899999999999988875 668889999999999999988887666554442 111 122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYP-DAVTYNTLISWHFKEG 639 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 639 (681)
+...+...+..+++...+....... +++...+..++..+...|+.++|...+.+.... .| +..++..++.++...|
T Consensus 214 ~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 290 (334)
T d1dcea1 214 LVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLL 290 (334)
T ss_dssp HHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGG
T ss_pred HHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCC
Confidence 3344566777788888888887752 344556667777788889999999999988874 44 4567788889999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 040136 640 LFDDAFLILHKGVANGFVPND-ATWYILVRNLV 671 (681)
Q Consensus 640 ~~~~A~~~~~~~~~~g~~~~~-~~~~~ll~~~~ 671 (681)
++++|.+.++++++ +.|+. ..|..+...+.
T Consensus 291 ~~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 291 YEKETLQYFSTLKA--VDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp GHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--HCcccHHHHHHHHHHHh
Confidence 99999999999998 67864 44455555444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=1e-08 Score=98.78 Aligned_cols=214 Identities=9% Similarity=-0.063 Sum_probs=110.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCcccH-HHHHHHHHhcCCHHHH
Q 040136 268 SNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVN--RIHEAAKLVDRMLVRGFTPDDITY-GVLMHGLCRTGRVDEA 344 (681)
Q Consensus 268 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A 344 (681)
.|++++|+..++...+.. +.+...|..+..++...+ ++++|...+.++..... ++...+ ......+...+..++|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHH
Confidence 344566666666666543 335555555555555544 36677777777665422 223333 2333455566677777
Q ss_pred HHHHhhcCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040136 345 RALLNKIPS---ANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVK 421 (681)
Q Consensus 345 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 421 (681)
+..++++.. .+..+|+.+...+.+.|++++|.. .++..... .|+ ...+...+...+..+.+...+......
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~-~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP-QGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS-CCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH-HHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 777666655 345566666666666666665544 21111100 000 111223334445555565555555544
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 040136 422 GCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSL 501 (681)
Q Consensus 422 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 501 (681)
. +++...+..+...+...++.++|...+.+..+.+ +.+...+..+..++...|+.
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------p~~~~~~~~l~~~~~~~~~~ 292 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN------------------------KWCLLTIILLMRALDPLLYE 292 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC------------------------HHHHHHHHHHHHHHCTGGGH
T ss_pred C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC------------------------chHHHHHHHHHHHHHHCCCH
Confidence 2 2333344444455555555555555555444331 11334455555566666666
Q ss_pred HHHHHHHHHHHhC
Q 040136 502 HEAHKLVNDMLFR 514 (681)
Q Consensus 502 ~~A~~~~~~~~~~ 514 (681)
++|.+.++.+.+.
T Consensus 293 ~eA~~~~~~ai~l 305 (334)
T d1dcea1 293 KETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.4e-07 Score=86.88 Aligned_cols=127 Identities=13% Similarity=-0.082 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 040136 187 SYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALS 266 (681)
Q Consensus 187 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 266 (681)
+|..+..+|.+.|++++|+..|++.++... -+..+|..+..++.+.|++++|...|+++.+.. +.+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 344445555566666666666666655432 144556666666666666666666666666554 334455566666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040136 267 KSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRM 316 (681)
Q Consensus 267 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (681)
..|++++|.+.+++..+.. +.+......+.....+.+..+.+..+....
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 165 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 6666666666666665543 223333333333334444444444333333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.8e-06 Score=73.32 Aligned_cols=122 Identities=7% Similarity=-0.094 Sum_probs=78.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 492 IHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKA 571 (681)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (681)
...+...|+++.|++.|+++ .+++..+|..+..+|...|++++|+..|+++++.+.. +...|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence 44556677777777777653 2456667777777777777777777777777775432 566777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 572 NTALEFLRDMIHRGLTPD----------------IVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 572 ~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
++|++.|++.+... +.+ ..++..+..++.+.|++++|.+.++.+.+.
T Consensus 87 ~~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 87 DLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77777777766531 111 123344555566666666666666666553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=2.5e-06 Score=73.66 Aligned_cols=142 Identities=11% Similarity=-0.044 Sum_probs=109.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI 606 (681)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 606 (681)
...+...|++++|++.|.++ .+|+..+|..++.+|...|++++|++.|++.++.+ +-+...|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 45567889999999998764 34677888889999999999999999999999853 33578888899999999999
Q ss_pred HHHHHHHHHHHHCC------------C--CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040136 607 QEALNLFDKLQAEG------------I--YPD-AVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVRNLV 671 (681)
Q Consensus 607 ~~A~~~~~~~~~~~------------~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 671 (681)
++|+..|++.+... + .++ ..++..+..++.+.|++++|.+.++++++....++.......+..+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 99999999987641 0 111 35566788889999999999999999987544444455555555555
Q ss_pred hc
Q 040136 672 KE 673 (681)
Q Consensus 672 ~~ 673 (681)
+.
T Consensus 167 ~~ 168 (192)
T d1hh8a_ 167 KQ 168 (192)
T ss_dssp TT
T ss_pred hh
Confidence 44
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.57 E-value=0.00019 Score=65.38 Aligned_cols=147 Identities=14% Similarity=0.021 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 040136 499 GSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCN----AGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR----TRK 570 (681)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 570 (681)
++.+.|...++...+.|.. .....+...+.. ......+...+......+ +...+..+...+.. ..+
T Consensus 88 ~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~ 161 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKD 161 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred hhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccc
Confidence 4556666666666655421 222222222221 334556666666655532 55566666666654 345
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChh
Q 040136 571 ANTALEFLRDMIHRGLTPDIVTYNSLINGLCK----MGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFK----EGLFD 642 (681)
Q Consensus 571 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 642 (681)
...+...++...+.| +......+...+.. ..+.++|+..|++..+.| +...+..|...|.+ ..+.+
T Consensus 162 ~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~ 235 (265)
T d1ouva_ 162 LKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEK 235 (265)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCST
T ss_pred cccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHH
Confidence 667777777776643 44555555555554 457888888888888865 55666667777665 34678
Q ss_pred HHHHHHHHHHHCCCC
Q 040136 643 DAFLILHKGVANGFV 657 (681)
Q Consensus 643 ~A~~~~~~~~~~g~~ 657 (681)
+|.++|+++.+.|..
T Consensus 236 ~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 236 QAIENFKKGCKLGAK 250 (265)
T ss_dssp THHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHCcCH
Confidence 888888888887743
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.2e-06 Score=68.56 Aligned_cols=99 Identities=16% Similarity=0.033 Sum_probs=62.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGL 640 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 640 (681)
-+..+...|++++|+.+|++.++.. +-+...|..+..++...|++++|+..++++++.+ +.+...|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 3455666677777777777666642 3355666666667777777777777777776642 3345666666677777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHH
Q 040136 641 FDDAFLILHKGVANGFVPNDATW 663 (681)
Q Consensus 641 ~~~A~~~~~~~~~~g~~~~~~~~ 663 (681)
+++|+..+++.++ +.|+...+
T Consensus 87 ~~~A~~~~~~a~~--~~p~~~~~ 107 (117)
T d1elwa_ 87 FEEAKRTYEEGLK--HEANNPQL 107 (117)
T ss_dssp HHHHHHHHHHHHT--TCTTCHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHH
Confidence 7777777777765 44554433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=4.1e-06 Score=78.06 Aligned_cols=204 Identities=11% Similarity=-0.048 Sum_probs=138.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040136 430 YTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVN 509 (681)
Q Consensus 430 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (681)
|......|...+++++|...|.++.+. .... .....-..+|..+..+|.+.|++++|.+.++
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~----------------~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~ 101 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADY----------------QKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHH----------------HHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHH----------------HHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 333456788889999999888776552 1111 0001124578888999999999999999999
Q ss_pred HHHhC----CCC-CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 510 DMLFR----GCP-LDEITYNGLIKALCN-AGAVDKGLGLFEEMMRK----GIKP-SSISCNILINGLCRTRKANTALEFL 578 (681)
Q Consensus 510 ~~~~~----~~~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (681)
...+. |.. ....++..+...|.. .|++++|+..++++.+. +..+ -..++..++..+...|++++|++.+
T Consensus 102 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~ 181 (290)
T d1qqea_ 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHH
Confidence 87653 211 124456666777754 69999999999988753 2111 1355788899999999999999999
Q ss_pred HHHHHCCCCC-----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHh--cCChhHH
Q 040136 579 RDMIHRGLTP-----DI-VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD------AVTYNTLISWHFK--EGLFDDA 644 (681)
Q Consensus 579 ~~~~~~~~~p-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~--~g~~~~A 644 (681)
+++....... .. ..+...+.++...|+++.|...++++.+. .|+ ......++.++.. .+.+++|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~--~~~~~~sre~~~l~~l~~a~~~~d~e~~~ea 259 (290)
T d1qqea_ 182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEH 259 (290)
T ss_dssp HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHH
T ss_pred HHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCccchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9988752111 11 22344555677889999999999999874 332 2344556666655 3468889
Q ss_pred HHHHHHHHH
Q 040136 645 FLILHKGVA 653 (681)
Q Consensus 645 ~~~~~~~~~ 653 (681)
+..|+++.+
T Consensus 260 i~~y~~~~~ 268 (290)
T d1qqea_ 260 CKEFDNFMR 268 (290)
T ss_dssp HHHHTTSSC
T ss_pred HHHHHHHhh
Confidence 888877653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.45 E-value=0.00031 Score=63.79 Aligned_cols=224 Identities=12% Similarity=-0.024 Sum_probs=147.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCcCHhhH
Q 040136 355 NVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCK----QRRFGSALELVNAMAVKGCEPNIVTY 430 (681)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 430 (681)
|+..+..|...+...+++++|++ +++...+.| +...+..|...|.. ..+...|...+......+ +....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~-~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~ 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKK-YFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence 45566677777777888888888 677666655 55566666666665 567778888887777665 23333
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hcCCHH
Q 040136 431 TILVDGFCK----EGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFL----RRGSLH 502 (681)
Q Consensus 431 ~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~ 502 (681)
..+...+.. ..+.+.|...++...+.+ .......+...+. ......
T Consensus 74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g--------------------------~~~a~~~l~~~~~~~~~~~~~~~ 127 (265)
T d1ouva_ 74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--------------------------YAEGCASLGGIYHDGKVVTRDFK 127 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred hccccccccccccchhhHHHHHHHhhhhhhh--------------------------hhhHHHhhcccccCCCcccchhH
Confidence 344433332 345666666666655543 2222222322332 234567
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 040136 503 EAHKLVNDMLFRGCPLDEITYNGLIKALCN----AGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR----TRKANTA 574 (681)
Q Consensus 503 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 574 (681)
.+...+......+ +...+..|...|.. ..+...+..+++...+.| +......+...|.. ..+.++|
T Consensus 128 ~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A 201 (265)
T d1ouva_ 128 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEA 201 (265)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhh
Confidence 7777777766543 55667777777765 456778888888888765 56666667666665 5689999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 040136 575 LEFLRDMIHRGLTPDIVTYNSLINGLCK----MGCIQEALNLFDKLQAEG 620 (681)
Q Consensus 575 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 620 (681)
+..|++..+.| +...+..|...|.. ..+.++|.+.|++..+.|
T Consensus 202 ~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 202 LARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 99999998875 45566677777764 347888999999998876
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=5.1e-06 Score=64.94 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=56.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 527 IKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCI 606 (681)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 606 (681)
+..+.+.|++++|+..|+++++... .+...|..+..+|...|++++|++.+++.++.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 4455666666666666666666532 255566666666666666666666666666642 33556666666666666666
Q ss_pred HHHHHHHHHHHH
Q 040136 607 QEALNLFDKLQA 618 (681)
Q Consensus 607 ~~A~~~~~~~~~ 618 (681)
++|+..|++..+
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 666666666665
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.40 E-value=8.5e-06 Score=75.82 Aligned_cols=202 Identities=10% Similarity=0.004 Sum_probs=93.6
Q ss_pred HHHHHHhCCChHHHHHHHHHcHhh---cCCCCC-HHhHHHHHHHHHhcCCcCcHHHHHHHHHHC----CC-CCChhhHHH
Q 040136 155 IMKYYGRGGVPGQATRLLLDMKSV---YGCQPT-FRSYNVVLDVLVAGNCHKVAPNLFYDMLSK----GI-SPTVYTFGV 225 (681)
Q Consensus 155 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~~~~~ 225 (681)
....|...|++++|.+.|.+..+- .+.+++ ..+|..+..+|.+.|++++|.+.+++..+. |. .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 344555555566665555554411 111111 234455555555666666666555554432 10 001223334
Q ss_pred HHHHHHh-cCChhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHH
Q 040136 226 VMKALCM-VNEVDSACSLLRDMTKH----GCVP-NSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDV------QTF 293 (681)
Q Consensus 226 ll~~~~~-~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~------~~~ 293 (681)
+...+.. .|++++|.+.+.+..+. +-++ -..++..+...+...|++++|.+.++++......... ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 4444433 46666666666655431 1111 1234555666666677777777777666543211110 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCc---ccHHHHHHHHHh--cCCHHHHHHHHhhcCCCCh
Q 040136 294 NDVIHGLCKVNRIHEAAKLVDRMLVRGFT-PDD---ITYGVLMHGLCR--TGRVDEARALLNKIPSANV 356 (681)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~---~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~ 356 (681)
...+..+...|+++.|.+.+++..+.... ++. .....++.++.. .+.+++|+..|+++.+.|.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 23334445566666666666666544211 111 122334444433 2345666666665555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=6.3e-06 Score=68.71 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=62.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC 605 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 605 (681)
.+..|.+.|++++|+..|+++++.... +...|..+..+|...|++++|.+.|++.++.. +-+...|..++.++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 345566777777777777777766432 56667777777777777777777777777642 2245667777777777777
Q ss_pred HHHHHHHHHHHHHC
Q 040136 606 IQEALNLFDKLQAE 619 (681)
Q Consensus 606 ~~~A~~~~~~~~~~ 619 (681)
+++|+..++++.+.
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 77777777777764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=5e-06 Score=69.33 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFK 637 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 637 (681)
+...+..|.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|+..|+++++.. +-+..+|..++.++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 3445677889999999999999999863 3467889999999999999999999999999953 3356799999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH
Q 040136 638 EGLFDDAFLILHKGVANGFVPNDA 661 (681)
Q Consensus 638 ~g~~~~A~~~~~~~~~~g~~~~~~ 661 (681)
.|++++|...++++++ +.|+..
T Consensus 91 ~g~~~eA~~~~~~a~~--~~p~~~ 112 (159)
T d1a17a_ 91 LGKFRAALRDYETVVK--VKPHDK 112 (159)
T ss_dssp TTCHHHHHHHHHHHHH--HSTTCH
T ss_pred cCCHHHHHHHHHHHHH--cCCCCH
Confidence 9999999999999998 456543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=4.4e-06 Score=72.98 Aligned_cols=99 Identities=8% Similarity=-0.023 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 040136 518 LDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNSL 596 (681)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 596 (681)
|+...+...+..|.+.|++++|+..|+++++..+ .+...|..++.+|.+.|++++|+..+++.++. .| +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 6777788889999999999999999999998753 37888999999999999999999999999874 45 57789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 040136 597 INGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
..+|...|++++|+..|+++.+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998874
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.28 E-value=6.1e-06 Score=71.99 Aligned_cols=99 Identities=11% Similarity=0.042 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 483 ANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILI 562 (681)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 562 (681)
|+...+......|.+.|++++|+..|+++++.. |.+...|..+..+|.+.|++++|+..|+++++.... +..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 567777788899999999999999999998874 778999999999999999999999999999986432 578899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 040136 563 NGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~ 583 (681)
.+|...|++++|+..|++.++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999876
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=3.1e-06 Score=66.44 Aligned_cols=92 Identities=17% Similarity=0.127 Sum_probs=40.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRK---ANTALEFLRDMIHRGLTPD-IVTYNSLINGLC 601 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 601 (681)
+++.+...+++++|++.|++++..+. .+..++..+..++.+.++ .++|+.++++++..+..|+ ..+|..+..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 44444444555555555555554432 244444444444444332 2234555554444321121 123344444445
Q ss_pred hcCCHHHHHHHHHHHHH
Q 040136 602 KMGCIQEALNLFDKLQA 618 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~ 618 (681)
+.|++++|++.|+++++
T Consensus 84 ~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 55555555555555544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=5e-06 Score=65.19 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 040136 559 NILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC---IQEALNLFDKLQAEGIYPD-AVTYNTLISW 634 (681)
Q Consensus 559 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 634 (681)
..+++.+...+++++|.+.|++.+..+ +.+..++..+..++.+.++ +++|+.+++++.+.+..|+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666777777777777777777752 3356677777777765443 3457777777766422222 2356667777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 635 HFKEGLFDDAFLILHKGVANGFVPNDATWYILVRN 669 (681)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 669 (681)
|.+.|++++|++.|+++++ +.|+..-...+...
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~~ 114 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELERL 114 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHHHH
Confidence 7777888888888887777 55665544444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.19 E-value=0.0016 Score=60.17 Aligned_cols=283 Identities=12% Similarity=0.019 Sum_probs=141.5
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHH
Q 040136 113 TFDVYYVLIDKLGANKEFKVIDSVLLQMKEEGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVL 192 (681)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll 192 (681)
+......++..|.+.|.++.|..++..+. -|..++..|.+.++++.|.+++.+.. +..+|..+.
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~-------~~~~~k~~~ 76 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVC 76 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC-------CHHHHHHHH
Confidence 33444555666777777777777776543 24566667777777777777665443 455667777
Q ss_pred HHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 040136 193 DVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVS 272 (681)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 272 (681)
..+.+.....-| .+.......+......++..|-..|.+++...+++...... ..+...++-++..|++.+ .+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~ 149 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQ 149 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HH
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hH
Confidence 777766544322 22222233344555667777777777787777777765432 345566777777777654 23
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCcccHHHHHHHHHhcCCHHHH
Q 040136 273 EALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLVDRMLVR--------GFTPDDITYGVLMHGLCRTGRVDEA 344 (681)
Q Consensus 273 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A 344 (681)
+..+. +...+ +..-...++..|...+-++++.-++..+-.. ...++..-....+..+.+.+
T Consensus 150 kl~e~---l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~----- 218 (336)
T d1b89a_ 150 KMREH---LELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA----- 218 (336)
T ss_dssp HHHHH---HHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCS-----
T ss_pred HHHHH---HHhcc---ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccC-----
Confidence 33333 32211 1111223344444444444444444332110 00122222222223333322
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040136 345 RALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVFTFNILIHGLCKQRRFGSALELVNAMAVKGCE 424 (681)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 424 (681)
|+..|-..+..|.... .+-... +...+... .|. ..++..+.+.+++......++.....|
T Consensus 219 ----------N~e~~~~~i~~yL~~~-p~~i~~-lL~~v~~~---~d~---~r~V~~~~k~~~l~li~p~Le~v~~~n-- 278 (336)
T d1b89a_ 219 ----------NVELYYRAIQFYLEFK-PLLLND-LLMVLSPR---LDH---TRAVNYFSKVKQLPLVKPYLRSVQNHN-- 278 (336)
T ss_dssp ----------STHHHHHHHHHHHHHC-GGGHHH-HHHHHGGG---CCH---HHHHHHHHHTTCTTTTHHHHHHHHTTC--
T ss_pred ----------ChHHHHHHHHHHHHcC-HHHHHH-HHHHhccC---CCH---HHHHHHHHhcCCcHHHHHHHHHHHHcC--
Confidence 3334444455554432 222222 33322221 122 345566677788888888887776654
Q ss_pred cCHhhHHHHHHHHHhcCCHHHHHHHH
Q 040136 425 PNIVTYTILVDGFCKEGQLEKANIII 450 (681)
Q Consensus 425 ~~~~~~~~ll~~~~~~g~~~~A~~~~ 450 (681)
+..+.+++...|...++++.-....
T Consensus 279 -~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 279 -NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 3467888999999999876544433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.16 E-value=1.1e-05 Score=62.40 Aligned_cols=88 Identities=17% Similarity=0.070 Sum_probs=44.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040136 492 IHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKA 571 (681)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (681)
...+.+.|++++|...+++.++.. |-+..+|..+..++.+.|++++|+..|+++++.... +...+..+..+|...|+.
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCH
Confidence 334445555555555555555442 334555555555555555555555555555554221 344455555555555555
Q ss_pred HHHHHHHHHH
Q 040136 572 NTALEFLRDM 581 (681)
Q Consensus 572 ~~A~~~~~~~ 581 (681)
++|++.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.16 E-value=1e-05 Score=62.53 Aligned_cols=89 Identities=11% Similarity=-0.063 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 561 LINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGL 640 (681)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 640 (681)
++..+.+.|++++|+..+++.+... +-+...|..+..++.+.|++++|+..++++++.. +.+...+..++.+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 3445556666666666666666542 1245566666666666666666666666666631 2235566666666666666
Q ss_pred hhHHHHHHHHH
Q 040136 641 FDDAFLILHKG 651 (681)
Q Consensus 641 ~~~A~~~~~~~ 651 (681)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=0.0022 Score=59.28 Aligned_cols=240 Identities=11% Similarity=0.025 Sum_probs=105.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 040136 154 LIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYTFGVVMKALCMV 233 (681)
Q Consensus 154 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 233 (681)
.+...+.+.|.++.|..+|..+. .|.-++..+.+.++++.|.+.+.+. -+..+|..+...+...
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 82 (336)
T ss_dssp ----------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhC
Confidence 44444555566666666655544 1344555555555555555554332 1334555555555444
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040136 234 NEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNRIHEAAKLV 313 (681)
Q Consensus 234 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 313 (681)
....-| .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+ .++..+.+
T Consensus 83 ~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e~l 155 (336)
T d1b89a_ 83 KEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHL 155 (336)
T ss_dssp TCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred cHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHHHH
Confidence 333221 11122222333344455555555666665555555544321 334445555555555543 22222222
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH
Q 040136 314 DRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLSVGCIPDVF 393 (681)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 393 (681)
... . +......++..|...+-+++ ++..|.+.|.+++|...+.+ . .++..
T Consensus 156 ~~~--s----~~y~~~k~~~~c~~~~l~~e------------------lv~Ly~~~~~~~~A~~~~i~---~---~~~~~ 205 (336)
T d1b89a_ 156 ELF--W----SRVNIPKVLRAAEQAHLWAE------------------LVFLYDKYEEYDNAIITMMN---H---PTDAW 205 (336)
T ss_dssp HHH--S----TTSCHHHHHHHHHTTTCHHH------------------HHHHHHHTTCHHHHHHHHHH---S---TTTTC
T ss_pred Hhc--c----ccCCHHHHHHHHHHcCChHH------------------HHHHHHhcCCHHHHHHHHHH---c---chhhh
Confidence 221 0 11122223334444444333 34456667777777663322 1 12222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 040136 394 TFNILIHGLCKQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIII 450 (681)
Q Consensus 394 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 450 (681)
.....+..+.+..+.+...++.....+. . +...+.++......-+..+..+.+
T Consensus 206 ~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~--p~~i~~lL~~v~~~~d~~r~V~~~ 258 (336)
T d1b89a_ 206 KEGQFKDIITKVANVELYYRAIQFYLEF--K--PLLLNDLLMVLSPRLDHTRAVNYF 258 (336)
T ss_dssp CHHHHHHHHHHCSSTHHHHHHHHHHHHH--C--GGGHHHHHHHHGGGCCHHHHHHHH
T ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHc--C--HHHHHHHHHHhccCCCHHHHHHHH
Confidence 2344455566666666655555555443 2 233455555554444544444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=3.5e-05 Score=64.66 Aligned_cols=114 Identities=11% Similarity=0.014 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK-PS-------------SISCNILINGLCRTRKANTALEFLRDMIHRGL 586 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 586 (681)
..+...+..+.+.|++++|+..|.++++.... +. ..+|+.+..+|.+.|++++|+..+++.+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~- 92 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 92 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence 44556677889999999999999998875211 11 2345566777777777777777777777742
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 040136 587 TPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFK 637 (681)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 637 (681)
+.+...|..+..+|...|++++|+..|+++++. .|+ ..+...+..+..+
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 225667777777777777777777777777773 453 4444444444333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=4.1e-05 Score=60.68 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHHHH
Q 040136 524 NGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL-TPD-----IVTYNSLI 597 (681)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-----~~~~~~l~ 597 (681)
..++..+.+.|++++|+..|.++++.+.. +...+..+..+|...|++++|++.++++++... .+. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554322 445555555555555555555555555554200 000 12344445
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 040136 598 NGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~ 618 (681)
..+...+++++|+..|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 555555555555555555554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.04 E-value=7.7e-05 Score=61.22 Aligned_cols=121 Identities=12% Similarity=0.042 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 521 ITYNGLIKALCNAGAVDKGLGLFEEMMRKGI----KPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSL 596 (681)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 596 (681)
..+..-+..+.+.|++++|+..|.++++.-. .++.... ..... ....+|..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~-----------------~~~~~-------~~~~~~~Nl 73 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL-----------------DKKKN-------IEISCNLNL 73 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH-----------------HHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH-----------------Hhhhh-------HHHHHHhhH
Confidence 3455566777788888888888887776311 0111100 00000 112356667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 597 INGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVR 668 (681)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 668 (681)
..+|.+.|++++|+..++++++.+ +.+..+|..++.++...|++++|+..|+++++ +.|+.......+.
T Consensus 74 a~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~ 142 (153)
T d2fbna1 74 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYE 142 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHH
T ss_pred HHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 778888888888888888888752 33567888888888888888888888888887 5565444333333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=0.00011 Score=61.58 Aligned_cols=117 Identities=6% Similarity=-0.045 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPL--------------DEITYNGLIKALCNAGAVDKGLGLFEEMMRKG 550 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (681)
...+......+.+.|++++|+..|++.+...... ...+|+.+..+|.+.|++++|+..++.+++..
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 4455666778889999999999998887652110 12456667788889999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 040136 551 IKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNSLINGLCKMG 604 (681)
Q Consensus 551 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 604 (681)
+. +...+..++.+|...|++++|+..|++.++. .| |......+..+..+.+
T Consensus 93 p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 93 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHH
T ss_pred cc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 32 7788888999999999999999999999884 44 4455544444443333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=4.3e-05 Score=60.56 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------HHHH
Q 040136 557 SCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD--------AVTY 628 (681)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~~ 628 (681)
.+..++..+...|++++|++.|++.++.+ +.+...+..+..+|.+.|++++|+..++++++. .|+ ..+|
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~~~~a~~~ 82 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAKAY 82 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 45567888999999999999999999863 346888999999999999999999999999874 222 2467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 040136 629 NTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYIL 666 (681)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 666 (681)
..+...+...+++++|+..+++.+. ..++......+
T Consensus 83 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 118 (128)
T d1elra_ 83 ARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKC 118 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh--cCCCHHHHHHH
Confidence 7888889999999999999999987 34565544333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.92 E-value=0.00018 Score=58.95 Aligned_cols=119 Identities=12% Similarity=0.042 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILING 564 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 564 (681)
...+......+.+.|++++|+..|.+++..-.... .. .+.......... ...+|+.+..+
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~-------------~~-~~~~~~~~~~~~------~~~~~~Nla~~ 76 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-------------EW-DDQILLDKKKNI------EISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-------------TC-CCHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh-------------hh-hhHHHHHhhhhH------HHHHHhhHHHH
Confidence 45666778889999999999999999886521100 00 000000000000 23467778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 040136 565 LCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAV 626 (681)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 626 (681)
|.+.|++++|++.+++.++.+ +.+..+|..++.++...|++++|+..|++.++. .|+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~ 135 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNL 135 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCH
T ss_pred HHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCH
Confidence 999999999999999988853 346788889999999999999999999999984 56533
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.82 E-value=0.00053 Score=57.03 Aligned_cols=94 Identities=11% Similarity=-0.021 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 040136 556 ISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISW 634 (681)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 634 (681)
..|+.+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|+..|+++++. .|+ ..+...+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 345667778888888888888888888752 446777888888888888888888888888874 454 4454555444
Q ss_pred HHhcCChh-HHHHHHHHHH
Q 040136 635 HFKEGLFD-DAFLILHKGV 652 (681)
Q Consensus 635 ~~~~g~~~-~A~~~~~~~~ 652 (681)
..+.+... ...+.+.+|.
T Consensus 142 ~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 44444332 3344444444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=2e-05 Score=79.36 Aligned_cols=113 Identities=12% Similarity=-0.051 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 040136 519 DEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNSLI 597 (681)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 597 (681)
+...+..+...+.+.|+.++|...+....... ...++..++..+...|++++|...|++..+. .| +...|+.|.
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg 193 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLA 193 (497)
T ss_dssp ------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHH
Confidence 44445555555555666666655555544321 1234555556666666666666666666553 23 335566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040136 598 NGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFK 637 (681)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 637 (681)
..+...|+..+|+..|.+.+... +|-..++..|...+.+
T Consensus 194 ~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 194 ILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 66666666666666666665542 3344555555555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.75 E-value=0.00018 Score=60.21 Aligned_cols=114 Identities=12% Similarity=0.081 Sum_probs=69.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 040136 523 YNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTP-DIVTYNSLINGLC 601 (681)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 601 (681)
+......+...|++++|+..|.++++.. ..........+.. . +.| +...|..+..++.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~-------~--~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGA-------K--LQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHG-------G--GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHH-------H--hChhhHHHHHHHHHHHH
Confidence 4455666677778888877777765420 0000000000000 0 111 3345666777778
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 040136 602 KMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPND 660 (681)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 660 (681)
+.|++++|+..++++++.. +.+...|..++.+|.+.|++++|++.|+++++ +.|+.
T Consensus 89 ~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n 144 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPED 144 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred hhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCC
Confidence 8888888888888888742 33466777788888888888888888888887 44544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.00027 Score=59.05 Aligned_cols=129 Identities=12% Similarity=0.045 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGL 565 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (681)
..+......+.+.|++++|++.|.++++. ...........+.. ... ......+..+..++
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~-------~~~-~~~~~~~~nla~~~ 87 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA-------KLQ-PVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG-------GGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH-------HhC-hhhHHHHHHHHHHH
Confidence 34566677888999999999999887642 00001111111110 100 11345677788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 040136 566 CRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPD-AVTYNTLISWHFK 637 (681)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 637 (681)
.+.|++++|+..+++.++.. +.+...|..+..++...|++++|+..|+++++. .|+ ..+...+..+..+
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQK 157 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred Hhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 99999999999999998853 346778888999999999999999999999985 454 4455555544433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.73 E-value=0.00019 Score=59.83 Aligned_cols=75 Identities=12% Similarity=0.010 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATWYILVR 668 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 668 (681)
.+|..+..+|.+.|++++|+..+++.++.. +.+...|..++.+|...|++++|...|+++++ +.|+.......+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~ 139 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIF 139 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 356678889999999999999999999963 45688999999999999999999999999998 5676554443333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.72 E-value=0.0005 Score=57.64 Aligned_cols=125 Identities=11% Similarity=0.079 Sum_probs=82.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 526 LIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGC 605 (681)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 605 (681)
........|++++|.+.|.+++..- +.... ........+...-..+.. -....+..+..++.+.|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 3456778899999999999988751 11100 000111111111111111 123456778888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHH
Q 040136 606 IQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVA-----NGFVPNDATWYI 665 (681)
Q Consensus 606 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~~~~~~~~~ 665 (681)
+++|+..++++++.. +-+...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+...
T Consensus 83 ~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 83 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 999999999998852 34577888899999999999999998888754 488888766443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=1.8e-05 Score=79.71 Aligned_cols=136 Identities=12% Similarity=-0.049 Sum_probs=77.6
Q ss_pred cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCCC
Q 040136 405 QRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTAN 484 (681)
Q Consensus 405 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 484 (681)
.+.++.|+..+....... +++...+..+...+.+.|+.+.|...+....... .
T Consensus 99 ~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------------------------~ 151 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--------------------------C 151 (497)
T ss_dssp HHHHHHHHHHHTC--------------------------------CCHHHHHH--------------------------H
T ss_pred HHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--------------------------H
Confidence 344455544443333221 2344556667777777787777776655544320 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040136 485 TVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILING 564 (681)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 564 (681)
..++..+...+...|++++|...|++..+.. |.+..+|+.|+..+...|+..+|...|.+.+... .|-..++..|...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 2456778888999999999999999998874 6788899999999999999999999999998864 4567788888777
Q ss_pred HHhcC
Q 040136 565 LCRTR 569 (681)
Q Consensus 565 ~~~~g 569 (681)
+.+..
T Consensus 230 ~~~~~ 234 (497)
T d1ya0a1 230 LSKAL 234 (497)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 76543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.63 E-value=0.00016 Score=58.44 Aligned_cols=127 Identities=12% Similarity=0.074 Sum_probs=65.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040136 495 FLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTA 574 (681)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 574 (681)
|-+.+.+++|.+.++..++.. |.+..++..+..+|...+++..+.+ ..+.+++|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~A 60 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEA 60 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHH
Confidence 344455666666666665553 4455555555555543322211100 11223444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 040136 575 LEFLRDMIHRGLTPDIVTYNSLINGLCKMG-----------CIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDD 643 (681)
Q Consensus 575 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 643 (681)
+..+++.++.+ +.+..+|..+..+|...| .+++|.+.|+++++ +.|+...+...+..+ ..
T Consensus 61 i~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~k 131 (145)
T d1zu2a1 61 ITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AK 131 (145)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HT
T ss_pred HHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HH
Confidence 55555544421 113344444444444332 35778888888887 477766555444333 45
Q ss_pred HHHHHHHHHHCCC
Q 040136 644 AFLILHKGVANGF 656 (681)
Q Consensus 644 A~~~~~~~~~~g~ 656 (681)
|.+++.+..++|+
T Consensus 132 a~~~~~e~~k~~~ 144 (145)
T d1zu2a1 132 APQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhc
Confidence 6677777766653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.61 E-value=0.00099 Score=55.74 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 040136 486 VTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMR-----KGIKPSSIS 557 (681)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 557 (681)
..+..+..++...|++++|+..++.++... |.+...|..++.+|.+.|+.++|++.|+++.+ .|+.|+..+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 445666777777777777777777777763 66777777777777777777777777777643 367776554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.49 E-value=9.6e-05 Score=66.58 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=69.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040136 496 LRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTAL 575 (681)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 575 (681)
.+.|++++|+..+++.++.. |.|...+..++..|+..|++++|...++.+.+.... +...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence 45677888888888877773 667777888888888888888888888887775321 2334444444333332222221
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 576 EFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 576 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
.-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11111000111122233333445566777777777777777664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.49 E-value=0.00031 Score=56.74 Aligned_cols=69 Identities=10% Similarity=-0.021 Sum_probs=46.3
Q ss_pred cccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 040136 463 GDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGS----------LHEAHKLVNDMLFRGCPLDEITYNGLIKALCN 532 (681)
Q Consensus 463 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 532 (681)
.+.+++|...|+...+..+. +...+..+..+|...++ +++|+..|+++++.. |.+..+|..+..+|..
T Consensus 10 ~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHH
Confidence 45688999999999988644 78888888888875544 355556665555543 4455555555555544
Q ss_pred c
Q 040136 533 A 533 (681)
Q Consensus 533 ~ 533 (681)
.
T Consensus 88 ~ 88 (145)
T d1zu2a1 88 F 88 (145)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.38 E-value=0.00013 Score=65.75 Aligned_cols=122 Identities=12% Similarity=0.047 Sum_probs=86.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 040136 530 LCNAGAVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPD-IVTYNSLINGLCKMGCIQE 608 (681)
Q Consensus 530 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 608 (681)
..+.|++++|+..+++.++..+. +...+..++..++..|++++|.+.++...+. .|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 34679999999999999998543 7899999999999999999999999999985 454 4555555555544444433
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040136 609 ALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVAN 654 (681)
Q Consensus 609 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (681)
+..-.......+-+++...+...+..+...|+.++|.+.++++.+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3222111111111222344455567788999999999999999873
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.36 E-value=0.0013 Score=53.66 Aligned_cols=63 Identities=19% Similarity=0.045 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAE-----GIYPD-----AVTYNTLISWHFKEGLFDDAFLILHKGVA 653 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (681)
..|+.+..+|...|++++|+..+++.++. ...++ ...+..+..+|...|++++|...|+++++
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666665542 11111 12455566777777777777777777665
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.18 E-value=0.0036 Score=50.97 Aligned_cols=93 Identities=23% Similarity=0.186 Sum_probs=63.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-
Q 040136 527 IKALCNAGAVDKGLGLFEEMMRKGI-KP----------SSISCNILINGLCRTRKANTALEFLRDMIHR-----GLTPD- 589 (681)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~~~-~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~- 589 (681)
...+...|++++|+..|++.++... .| ....|+.+..+|...|++++|++.+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3445566777777777777765311 01 1356777888888888888888888877642 11222
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040136 590 ----IVTYNSLINGLCKMGCIQEALNLFDKLQAE 619 (681)
Q Consensus 590 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (681)
...+..+..+|...|++++|+..|+++.+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234667888999999999999999988764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.72 E-value=0.023 Score=44.31 Aligned_cols=110 Identities=11% Similarity=0.031 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 040136 535 AVDKGLGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK----MGCIQEAL 610 (681)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 610 (681)
++++|..+|++..+.|. ......|. .....+.++|++++++..+.| +......|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 45556666666655542 12222222 123345666666666666654 33344444444442 34567777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 040136 611 NLFDKLQAEGIYPDAVTYNTLISWHFK----EGLFDDAFLILHKGVANG 655 (681)
Q Consensus 611 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 655 (681)
++|++..+.| +......|...|.. ..+.++|.+++++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 7777777755 44445555555554 346777777777777766
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.0067 Score=44.20 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHR-----GLTPD-IVTYNSLINGLCKMGCIQEALNLFDKLQA 618 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (681)
+-.++..+.+.|++++|+..|++.++. ...++ ..+++.+..++.+.|++++|+..++++++
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 334555555555555555555555432 00111 23455555555555555555555555555
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.016 Score=42.14 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040136 523 YNGLIKALCNAGAVDKGLGLFEEMMRKG-----IKPS-SISCNILINGLCRTRKANTALEFLRDMIH 583 (681)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (681)
+-.++..+.+.|++++|+..|+++++.. ..++ ..+++.+..++.+.|++++|++.++++++
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 3445555666666666666666655420 1111 34555666666666666666666666665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.14 E-value=0.09 Score=40.74 Aligned_cols=81 Identities=14% Similarity=0.046 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 040136 534 GAVDKGLGLFEEMMRKGIKPSSISCNILINGLCR----TRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCK----MGC 605 (681)
Q Consensus 534 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 605 (681)
.+.++|..++++..+.| +......|...|.. ..+.++|.++|++..+.| +......|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34455555555555543 33344444444432 234555666666655543 22333334444433 335
Q ss_pred HHHHHHHHHHHHHCC
Q 040136 606 IQEALNLFDKLQAEG 620 (681)
Q Consensus 606 ~~~A~~~~~~~~~~~ 620 (681)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666666554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.89 E-value=0.48 Score=34.99 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGIK 552 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 552 (681)
+.......++...+.|+-+.-.++++.+.+.+ .+++.....+..+|-+.|...++.+++.++-+.|++
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 44455566667777788888888887776653 667777777888888888888888888888777754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.69 E-value=0.21 Score=37.32 Aligned_cols=79 Identities=14% Similarity=0.006 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 040136 588 PDIVTYNSLINGLCKMG---CIQEALNLFDKLQAEGIYPDA-VTYNTLISWHFKEGLFDDAFLILHKGVANGFVPNDATW 663 (681)
Q Consensus 588 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 663 (681)
+...+--...+++.++. +.++|+.+++++.+.+ +.+. ..+..|.-+|.+.|++++|+++++++++ +.|+..-.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHHH
Confidence 45555556666676554 3456777777777642 2233 3555666777788888888888888877 56765544
Q ss_pred HHHHHH
Q 040136 664 YILVRN 669 (681)
Q Consensus 664 ~~ll~~ 669 (681)
..+...
T Consensus 110 ~~L~~~ 115 (124)
T d2pqrb1 110 GALKSM 115 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.43 E-value=0.63 Score=34.34 Aligned_cols=66 Identities=14% Similarity=0.011 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 040136 591 VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGVANGFV 657 (681)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 657 (681)
..++.-++.+.++|+-+.-.++.+.+.+.+ +|++.....+..+|.+.|...++-+++.++-++|+.
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 445666778888899888888988877754 888888889999999999999999999999998864
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.23 E-value=3.6 Score=39.02 Aligned_cols=351 Identities=11% Similarity=0.060 Sum_probs=181.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040136 226 VMKALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHALSKSNRVSEALMLLEEMILMGCTSDVQTFNDVIHGLCKVNR 305 (681)
Q Consensus 226 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (681)
.+..+.+.++++.....+ . ..+.+...-.....+....|+...|.+.+..+-..|. .....+..+.
T Consensus 78 ~l~~L~~~~~w~~~~~~~----~-~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~-------- 143 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFS----P-EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLF-------- 143 (450)
T ss_dssp HHHHHHHTTCHHHHHHHC----C-SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHH--------
T ss_pred HHHHHHhccCHHHHHHhc----c-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHH--------
Confidence 344555666655433222 1 1233444444566666667777777666666554431 1222222222
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040136 306 IHEAAKLVDRMLVRGFTPDDITYGVLMHGLCRTGRVDEARALLNKIPSANVVLLNTVINGYVISGRFDEAKAIFYDSMLS 385 (681)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (681)
..+...|. .+...+-.-+......|+...|..+...+...........+.............. .
T Consensus 144 --------~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~-------~ 207 (450)
T d1qsaa1 144 --------SVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFAR-------T 207 (450)
T ss_dssp --------HHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHH-------H
T ss_pred --------HHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHh-------c
Confidence 22222221 2222333344445556677777777666655444444444444433322222221 1
Q ss_pred CCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCC
Q 040136 386 VGCIPDVFTFNILIHGLCK--QRRFGSALELVNAMAVKGCEPNIVTYTILVDG----FCKEGQLEKANIIINEMLAKGLS 459 (681)
Q Consensus 386 ~~~~p~~~~~~~ll~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~g~~~~A~~~~~~~~~~~~~ 459 (681)
...+......+..++.+ ..+.+.+..++........ .+..-+..+... ....+..+.+...+......+
T Consensus 208 --~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~-- 282 (450)
T d1qsaa1 208 --TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-- 282 (450)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--
T ss_pred --CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--
Confidence 12233333333333332 3466777777777655421 122222222222 223444555555555444432
Q ss_pred CCccccHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 040136 460 LNTGDRIEEALGLYQDMLLEGVTANTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKG 539 (681)
Q Consensus 460 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 539 (681)
.+.....-.+......+++..+...++.+... ......-.--+..++...|+.++|
T Consensus 283 -----------------------~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A 338 (450)
T d1qsaa1 283 -----------------------QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEA 338 (450)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------------cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhH
Confidence 23343344455556778999998888877543 122334445567888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC-HHH---HHHHHHHHHhcCCHHHHHHHH
Q 040136 540 LGLFEEMMRKGIKPSSISCNILINGLCRTRKANTALEFLRDMIHRGL--TPD-IVT---YNSLINGLCKMGCIQEALNLF 613 (681)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~-~~~---~~~l~~~~~~~g~~~~A~~~~ 613 (681)
..+|..+... ++ |-.++.+ .+.|..-. +..... .+. ... -..-+..+...|+...|...|
T Consensus 339 ~~~~~~~a~~---~~---fYG~LAa-~~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~ 404 (450)
T d1qsaa1 339 KEILHQLMQQ---RG---FYPMVAA-QRIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEW 404 (450)
T ss_dssp HHHHHHHHTS---CS---HHHHHHH-HHTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcC---CC---hHHHHHH-HHcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHH
Confidence 9999988753 33 3333222 22232100 000000 000 000 112345677899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040136 614 DKLQAEGIYPDAVTYNTLISWHFKEGLFDDAFLILHKGV 652 (681)
Q Consensus 614 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (681)
..+... .+......+.....+.|.++.|+....+..
T Consensus 405 ~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 405 ANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 988763 255566778888899999999998877763
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.39 E-value=4.7 Score=38.18 Aligned_cols=171 Identities=9% Similarity=0.008 Sum_probs=94.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccHHHHHHHHHHHHhcCCCC
Q 040136 404 KQRRFGSALELVNAMAVKGCEPNIVTYTILVDGFCKEGQLEKANIIINEMLAKGLSLNTGDRIEEALGLYQDMLLEGVTA 483 (681)
Q Consensus 404 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 483 (681)
..+..+.+..++......+ .+.....-.+......+++..+...+..+... ...
T Consensus 264 ~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~------------------------~~~ 317 (450)
T d1qsaa1 264 GNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME------------------------AKE 317 (450)
T ss_dssp STTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT------------------------GGG
T ss_pred HcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc------------------------ccc
Confidence 3455666766666655543 23333333444455667777777776655321 011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC-HHH---
Q 040136 484 NTVTYNTLIHAFLRRGSLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRKGI--KPS-SIS--- 557 (681)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~-~~~--- 557 (681)
...-.-=+..++...|+.+.|...|..+... ++ |-.++.+- +.|..-. +....+ .+. ...
T Consensus 318 ~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~~-------~~~~~~~~~~~~~~~~~~ 383 (450)
T d1qsaa1 318 KDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEYE-------LKIDKAPQNVDSALTQGP 383 (450)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCCC-------CCCCCCCSCCCCHHHHSH
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCCC-------CCcCCCCccHHHhhhcCh
Confidence 2333334567778888888888888887643 23 33333321 2221100 000000 000 000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040136 558 CNILINGLCRTRKANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQ 617 (681)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (681)
-...+..+...|....|...+..+... .+......+.....+.|.++.|+....+..
T Consensus 384 ~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 384 EMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 112345566788889998888887753 244456667777788899988887776653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.20 E-value=1.1 Score=33.22 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040136 552 KPSSISCNILINGLCRTRK---ANTALEFLRDMIHRGLTPDI-VTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDA 625 (681)
Q Consensus 552 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 625 (681)
.++..+--....++.+..+ .++|+.++++....+ +.+. ..+-.|.-+|.+.|++++|.+.++.+++ +.|+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n 106 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 106 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCc
Confidence 3455565566666665543 456777777777542 2232 4555666677788888888888888877 46654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.15 E-value=1.5 Score=30.56 Aligned_cols=62 Identities=11% Similarity=0.204 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040136 570 KANTALEFLRDMIHRGLTPDIVTYNSLINGLCKMGCIQEALNLFDKLQAEGIYPDAVTYNTLI 632 (681)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 632 (681)
+.-++.+-++.+...++.|++.+..+-+++|.+.+|+..|+++++....+ +.++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 34455666666666677778777777888888888888888888777765 233444555544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.11 E-value=1.6 Score=30.35 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040136 500 SLHEAHKLVNDMLFRGCPLDEITYNGLIKALCNAGAVDKGLGLFEEMMRK 549 (681)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (681)
+.-++.+-++.+......|++.+..+.+.+|.+.+++..|.++|+....+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555443
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.83 E-value=9.1 Score=29.18 Aligned_cols=97 Identities=12% Similarity=0.022 Sum_probs=54.3
Q ss_pred cCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHcHhhcCCCCCHHhHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCChhh
Q 040136 143 EGIICRESLFILIMKYYGRGGVPGQATRLLLDMKSVYGCQPTFRSYNVVLDVLVAGNCHKVAPNLFYDMLSKGISPTVYT 222 (681)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 222 (681)
.|.+..+..|..-.+.+...|++.+|..+-...+ .|+-+++.|.+-+-.+=...|+..-.+.+|..+++.|- .|..-
T Consensus 25 ~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP--~giLRt~~Ti~rFk~~~~~pGq~spLL~YF~~Ll~~~~-LN~~E 101 (157)
T d1bpoa1 25 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAP--KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQ-LNKYE 101 (157)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG--GGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSC-CCHHH
T ss_pred cCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCC--cccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcCC-CchHH
Confidence 3444455556556666666666666666665555 34455555555544443445666666667777766652 34443
Q ss_pred HHHHHHHHHhcCChhHHHHH
Q 040136 223 FGVVMKALCMVNEVDSACSL 242 (681)
Q Consensus 223 ~~~ll~~~~~~g~~~~A~~~ 242 (681)
-.-+.+.....|+.+-..+.
T Consensus 102 SlEl~r~vL~q~r~~lve~W 121 (157)
T d1bpoa1 102 SLELCRPVLQQGRKQLLEKW 121 (157)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHhcCcHHHHHHH
Confidence 34455555556665555444
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