Citrus Sinensis ID: 040145

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
Protein Sequence
MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRAEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA
Secondary Structure (PSIPRED)
ccEEEEcccccccccccccEEEccccccHHHcccccccccHHHHHcccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccEEEcccccccccccccccEEEEEEEccEEEEEEcccccccccccEEEEEEcccccEEEccccHHHcccEEEEEEccEEEEEcccccccccccEEEEEEcccccEEEccccccccccEEEEEEccEEEEEEccccccccccEEEEEEcccccEEEccccccccccEEEEEEccEEEEEEEccccEEEEEEcccccEEEcccccccccccccEEEEEEccEEEEEEccccccccEEEEEccccccccccccEEEEccccccccEEEEcEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccEEccccccEEccccEEEEcccccccccccHccccccccccccccHHHHHHHHHcccHccHHHHHHHHHHHHHHHccccHHHcccccccccccEEEEEEccccccccEEEEEccccccEEEccccccccccccccccEEEEEEccEEEEEEcccccccccccEEEEEccccccEEEccccccccccEEEEEEccEEEEEEccccccccEcEEEEEcccccEEEEEccccccccccEEEEEccEEEEEEcccccccccccEEEEccccccEEEccccccccccEEEEEEccEEEEEEcccccEEEEEccccccEEEEccccccccccccEEEEEEccEEEEEEccccccccEEEcccccEccccccccEEEEcccccccccEccccEEEEc
Coil and Loop (DISEMBL)
mqrvrlssqqapvhklgdsqmtlspKFRLAVIQssllnpspeleaslraepfipglpddvalncllrlpveshAACRAVCKRWHLLLGNKERFFTRrkelgfkdpwlFVFAFHKCTGKIQWQVLDLTHYcwhtipampckdkvcphgfrcvsipregtlfvcggmvsdvdcpLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYvaggssadlfeldsaevldpvkgnWRTIASMGTNMASYDAAVLDGKLLvtegwlwpffvsprgqvydpstdnweSMAVGLREGWTGSSVVVYEHLFVVSELERmklkvydpstdswetiegpplpeqickpfavnacdcrvyVVGRNLHVAVGHITRLSTSEKKWSFSVQWQvvdapdnfsdltpsssqvlfa
Flexible Loop (DISEMBL)
mqrvrlssqqapvhklgdsqmtlsPKFRLAVIQSSLLNPSPELEASLRAEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHItrlstsekkWSFSVQWQVVDAPdnfsdltpsssqvlfa
Low Complexity Region (SEG)
MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRAEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA
Disordered region (IsUnstruct)
****************************LAVI*****************EPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDA*****************
Disordered Region (DISOPRED)
*****************************************************PGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKE*********GFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA
Disordered Region (DISEMBL)
**************KLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRAEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDL**********
Disordered Region (DISPRO)
*QRVRLSSQQAPVHKLGDSQMTLSPKFRLAVIQS****************PFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRAEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	402	2.2.26 [Sep-21-2011]
Q9C6Z0	398	F-box/kelch-repeat protei	yes	no	0.987	0.997	0.739	1e-180
Q8LAW2	372	F-box protein AFR OS=Arab	no	no	0.883	0.954	0.390	5e-71
Q93W93	434	F-box/kelch-repeat protei	no	no	0.701	0.649	0.316	6e-35
Q9CAG8	376	F-box/kelch-repeat protei	no	no	0.706	0.755	0.289	2e-26
Q9LM55	475	F-box/kelch-repeat protei	no	no	0.676	0.572	0.295	6e-26
Q9FZJ3	346	Putative F-box/kelch-repe	no	no	0.681	0.791	0.253	6e-20
Q9FKJ0	393	F-box/kelch-repeat protei	no	no	0.674	0.689	0.281	1e-18
O80582	409	F-box/kelch-repeat protei	no	no	0.567	0.557	0.275	1e-15
Q9M2C9	358	F-box/kelch-repeat protei	no	no	0.726	0.815	0.238	2e-15
Q9SJ04	372	F-box/kelch-repeat protei	no	no	0.691	0.747	0.270	9e-15

>sp|Q9C6Z0|FBK17_ARATH F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1

 Score =  632 bits (1631), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 298/403 (73%), Positives = 349/403 (86%), Gaps = 6/403 (1%)

Query: 1   MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAV-IQSSLLNPSPELEASLRAEPFIPGLPDD 59
           MQRVR+SSQ+A VHKLGDSQMTLSPKFR+A  IQS+L + S ELE SLR EP IPGLPDD
Sbjct: 1   MQRVRVSSQRAVVHKLGDSQMTLSPKFRVAASIQSTLFDRSSELELSLRGEPLIPGLPDD 60

Query: 60  VALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKI 119
           VALNCLLR+PV+SH + ++VCKRWHLL G KE FF +RKE GFKDPWLFV  F +CTGKI
Sbjct: 61  VALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVVGFSRCTGKI 120

Query: 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKY 179
           QW+VLDL +  WH IPAMPC+DKVCPHGFR VS+PREGT+FVCGGMVSD DCPLDLVLKY
Sbjct: 121 QWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREGTMFVCGGMVSDSDCPLDLVLKY 180

Query: 180 EMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS 239
           +M KN WTV NKMITARSFFASGVI GMIY AGG++ADL+ELD AEVL+P+ GNWR +++
Sbjct: 181 DMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYELDCAEVLNPLDGNWRPVSN 240

Query: 240 MGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV 299
           M  +MASYD AVL+GKLLVTEGWLWPFFVSPRGQVYDP TD WE+M++GLREGWTG+SVV
Sbjct: 241 MVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTDQWETMSMGLREGWTGTSVV 300

Query: 300 VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV 359
           +Y+ LF+VSELERMK+KVYDP TDSWETI GP LPEQIC+PFAVN    RVYVVGRNLH+
Sbjct: 301 IYDRLFIVSELERMKMKVYDPVTDSWETINGPELPEQICRPFAVNCYGNRVYVVGRNLHL 360

Query: 360 AVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA 402
           AVG+I +   SE K  F+V+W+VV++P+ ++D+TPS+SQ+LFA
Sbjct: 361 AVGNIWQ---SENK--FAVRWEVVESPERYADITPSNSQILFA 398

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAW2|AFR_ARATH F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2

 Score =  268 bits (686), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 206/369 (55%), Gaps = 14/369 (3%)

Query: 37  LNPSPELEASLRAEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTR 96
           +N   E E   +++P I GLP+D+A  CLLRLP   HA  R+V   W+  + N  RF   
Sbjct: 13  INDQAEEETRTKSQPLISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNP-RFLFS 71

Query: 97  RKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCK-DKVC-PHGFRCVSIP 154
           ++ L    P+LFVFAF+K T +IQWQ LDL    W  +P MP    K+  PH   C S+P
Sbjct: 72  KQSLSISSPYLFVFAFNKSTARIQWQSLDLASGRWFVLPPMPNSFTKISSPHALSCASMP 131

Query: 155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGS 214
           R+G LFV GG   DV+      + Y    NRW+ ++ M++ R++F SG + G I   GGS
Sbjct: 132 RQGKLFVLGG--GDVN---RSAVVYTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGS 186

Query: 215 SADLFELDS-AEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQ 273
                E  +  E  DP    W  +  +   +A YD+AV+  ++ VTEGW WPF   P GQ
Sbjct: 187 VGGNGEATTEVESYDPDNDTWTVVKKLPMVLAKYDSAVIGKEMCVTEGWAWPFMFPPMGQ 246

Query: 274 VYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPL 333
           VYD     W  M+ G++EGWTG SVV+ + LFV+SE     +KVY    D+W  + G  L
Sbjct: 247 VYDSDEGTWREMSGGMKEGWTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKL 306

Query: 334 P-EQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDL 392
             E++ +PFAV   D RV+VV   ++VA G ++     +    FSV+W++V +P +    
Sbjct: 307 QGEKMRRPFAVTGADDRVFVVASGINVAEGRVSEGQNGD----FSVEWRMVSSPKSSIQF 362

Query: 393 TPSSSQVLF 401
           +P+S  VL+
Sbjct: 363 SPASCHVLY 371

Component of SCF (ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyls elongation in response to red and far-red light exposure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W93|FBK22_ARATH F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1

 Score =  148 bits (374), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 139/297 (46%), Gaps = 15/297 (5%)

Query: 37  LNPSPELEASLRAE------PFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNK 90
           +NP+     + + E      P +PGLPDD+A+ CL+R+P   H   R VCKRW+  L + 
Sbjct: 57  INPNAHRRKNSKRERTRIQPPLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWY-RLASG 115

Query: 91  ERFFTRRKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRC 150
             F+++RK LG  + W++VF   +  GKI W   D     W  +P +P ++     GF C
Sbjct: 116 NFFYSQRKLLGMSEEWVYVFKRDR-DGKISWNTFDPISQLWQPLPPVP-REYSEAVGFGC 173

Query: 151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYV 210
             +   G      G    +   +  V+ Y  + N+W     M+  R FF   VI   +YV
Sbjct: 174 AVL--SGCHLYLFGGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYV 231

Query: 211 AGGSSADLFE-LDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVS 269
           AGG    +   L SAEV DP K  W  IA M T M      V D K  +         +S
Sbjct: 232 AGGECEGIQRTLRSAEVYDPNKNRWSFIADMSTAMVPLIGVVYDKKWFLKGLGSHQLVMS 291

Query: 270 PRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWE 326
              + YDP  ++W  ++ G+  GW      +   L+ +   +  KL+V+D STDSW 
Sbjct: 292 ---EAYDPEVNSWSPVSDGMVAGWRNPCTSLNGRLYGLDCRDGCKLRVFDESTDSWN 345

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 134/301 (44%), Gaps = 17/301 (5%)

Query: 37  LNPSPELEASLRAEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTR 96
           L+    L  +   +P IPGLPDDVA  CL  +P     +  +VCK+W  ++ +KE F T 
Sbjct: 24  LDLGSRLSENFMDDPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKE-FITV 82

Query: 97  RKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPRE 156
           R+  G  + WL+V   +      +W+V+D       ++P MP   K    GF+ V +  +
Sbjct: 83  RRLAGMLEEWLYVLTMNAGGKDNRWEVMDCLGQKLSSLPPMPGPAKT---GFKVVVVDGK 139

Query: 157 -----GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVA 211
                G   + G +V+  D     V +Y+   N W+ +  +  AR  FA   + G +YV 
Sbjct: 140 LLVIAGCCMINGSLVASAD-----VYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVV 194

Query: 212 GGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWL-WPFFVSP 270
           GG   D   L SAEV DP    W  I S+        A+  +GKL V  G   +    S 
Sbjct: 195 GGHGVDGESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYVMGGRSNFTIGNSK 254

Query: 271 RGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEG 330
              VY+    +W     GL      + V V + LF +      K+ V++   ++WE +  
Sbjct: 255 LLDVYNTQCGSWHGSKNGLT--MVTAHVEVGKKLFCIDWKNHRKMSVFNAEDETWEVVAL 312

Query: 331 P 331
           P
Sbjct: 313 P 313

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LM55|FBK8_ARATH F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1

 Score =  119 bits (297), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 154/345 (44%), Gaps = 73/345 (21%)

Query: 52  FIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFA 111
            IP LPD++++  L RLP   +++ R V +RW   +   E  ++ RKELG  + WL+V  
Sbjct: 43  LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSE-VYSLRKELGRTEEWLYVLT 101

Query: 112 FHKCTGKIQWQVLDLTHYCWHTIPAMPCK--------------DKVCPHGFRCVSIPR-- 155
                 K+ W  LD     W  +P MP                + + P  F   +I R  
Sbjct: 102 -KGHEDKLLWYALDPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITP-SFNVGAIVRSF 159

Query: 156 --------------------EGTLFVCGGMVSD--VDCPLDLVLKYEMQKNRWTVMNKMI 193
                               +G L+V GG+     V C    V +++   N W+ ++ M+
Sbjct: 160 LGRRDSSEQMPFCGCAIGAVDGGLYVIGGLSRSKTVSC----VWRFDPILNSWSEVSSML 215

Query: 194 TARSFFASGVIGGMIYVAGGSSAD---LFELDSAEVLDPVKGNWRTIASMGTNMA----- 245
            +R++  +GV+   +YV GG       L  L SAEV DP    W  + SM  + A     
Sbjct: 216 ASRAYSKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSMPFSKAQVLPN 275

Query: 246 SYDAAVL----------DGKLLVTEG-WLWPFFVSPRGQVYDPSTDNWESMAVGLREGW- 293
           ++ A +L          +G+L V +  + WPFFV   G+VYDP T+ W  M  G+ EGW 
Sbjct: 276 AFLADLLKPIATGMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWVEMPSGMGEGWP 335

Query: 294 -----TGSSVVVYEHLFVV---SELERMKLKVYDPSTDSWETIEG 330
                T  SVVV   L+     S +E  K+KVYD   D+W+ + G
Sbjct: 336 ARQAGTKLSVVVDGELYAFDPSSSMENGKIKVYDQKEDTWKVVIG 380

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZJ3|FBK16_ARATH Putative F-box/kelch-repeat protein At1g27420 OS=Arabidopsis thaliana GN=At1g27420 PE=4 SV=2

 Score = 99.0 bits (245), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 130/327 (39%), Gaps = 53/327 (16%)

Query: 49  AEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLF 108
           + P IPGL DDVA  C+ ++P  S      VC+RW   L   + F   RK  G  + +L 
Sbjct: 7   SSPIIPGLTDDVAELCVSKIPRSSFQITSQVCRRWRSFL-RSQHFAAVRKLTGTVEEFLC 65

Query: 109 VFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD 168
           V    +C   + W+V D +      IP +P   K    GF  V++   G +   GG  ++
Sbjct: 66  VLMESECGRDVYWEVFDASGNKLGQIPPVPGPLK---RGF-GVAVLDGGKIVFFGGY-TE 120

Query: 169 VDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLD 228
           V+                              SG+    +     +SAD++E D      
Sbjct: 121 VE-----------------------------GSGINSTTV----SASADVYEFD------ 141

Query: 229 PVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG 288
           P   +WR +A M     ++  A ++G L V  G+    +     +VY+P T+ W  M   
Sbjct: 142 PANNSWRKLAGMNIPRYNFAFAEVNGLLYVIRGYSTDTYSLSNAEVYNPKTNQWSLMHCP 201

Query: 289 LREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDC 348
            R  W G +      L+ V    R  + +YDP T +WE +      EQ    ++      
Sbjct: 202 NRPVWRGFAFAFSSKLYAVGNGSRF-IDIYDPKTQTWEELNS----EQSVSVYSYTVVRN 256

Query: 349 RVYVVGRNLHVAVGHITRLSTSEKKWS 375
           +VY + RN+    G +      E  WS
Sbjct: 257 KVYFMDRNMP---GRLGVFDPEENSWS 280

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKJ0|FK132_ARATH F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana GN=At5g60570 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 123/291 (42%), Gaps = 20/291 (6%)

Query: 49  AEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLF 108
           ++  +PGL DDVALNCL  +P   + +   V K+++ L+ N    F  RKELG  +  +F
Sbjct: 46  SDSVLPGLIDDVALNCLAWVPRSDYPSLSCVNKKYNKLI-NSGHLFALRKELGIVEYLVF 104

Query: 109 VFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD 168
           +    +      W +       W  +P MPC +  C +     S+  +  L V G  +  
Sbjct: 105 MVCDPR-----GWLMFSPMKKKWMVLPKMPCDE--CFNHADKESLAVDDELLVFGRELFQ 157

Query: 169 VDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLD 228
                  + KY ++   W     M   R  FASG +GG+  VAGG+  +   L SAE+ D
Sbjct: 158 F-----AIWKYSLRSRCWVKCEGMHRPRCLFASGSLGGIAIVAGGTDMNGNILASAELYD 212

Query: 229 PVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW---ESM 285
              G W  + +M +         +DGK  V  G   P      G+ +D  T  W   E M
Sbjct: 213 SSSGRWEMLPNMHSPRRLCSGFFMDGKFYVIGGMSSPNVSVTFGEEFDLETRKWRKIEGM 272

Query: 286 AVGLREGWTGSS--VVVYEHLFVVSELERMKLKVYDPSTDSWETI-EGPPL 333
              +          VVV   LF +     M +K YD   + WE +   PP+
Sbjct: 273 YPNVNRAAQAPPLVVVVNNELFTLEYSTNM-VKKYDKVKNKWEVMGRLPPM 322

Arabidopsis thaliana (taxid: 3702)

>sp|O80582|FBK46_ARATH F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana GN=At2g44130 PE=2 SV=2

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 108/265 (40%), Gaps = 37/265 (13%)

Query: 52  FIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFK-------- 103
            IPGLP ++AL CL+R+P +  +A R+VC+ W  LL +   F   R+  G          
Sbjct: 19  LIPGLPSELALECLVRVPFQFQSAMRSVCRSWRSLLSDSS-FIQERRRCGKTELLLCLVQ 77

Query: 104 ------------DPWLFVFAFHK---------CTGKIQWQVLDLTHYCWHTIPAMPCKDK 142
                       D  L V              CT +    V +     WH + A P +++
Sbjct: 78  PLTPPIPASKSVDETLMVDEKKSEDESHPRVFCTPRFGLSVYNAAMSTWHRV-AFPEEEQ 136

Query: 143 VCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASG 202
           + P    CV +   G + + GG   +   P   V   E    +W     M  +RSFFA  
Sbjct: 137 I-PLFCECVVLQDAGKILLIGGWDPETLQPTRDVYVLEFAGRKWRRGAPMKESRSFFACA 195

Query: 203 VIG-GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM--GTNMASYDAAVLDGKLLVT 259
            +    +YVAGG       L SAEV D  K  W ++  M  G +     A  +  +  V 
Sbjct: 196 SVSPTKVYVAGGHDDQKNALRSAEVYDVEKDEWSSVTPMTEGRDECQGFAVGMGLRFCVL 255

Query: 260 EGWLWPFFVSPR--GQVYDPSTDNW 282
            G+        R  G++YDP+TD+W
Sbjct: 256 SGYGTESQGRFRSDGEIYDPATDSW 280

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2C9|SKIP4_ARATH F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana GN=SKIP4 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 138/318 (43%), Gaps = 26/318 (8%)

Query: 52  FIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFA 111
            I G+PDD++ +CL R+P E H A + V +RW   + + E     R E    + W++   
Sbjct: 21  LISGVPDDISKSCLARVPREYHMAMKCVSRRWRDFVCSDE-MCDYRNEFNLAESWIYALC 79

Query: 112 FHKCTGKIQWQVLD--LTHYCWHTI---PAMPCKDKVCPHGFRCVSIPREGTLFVCGGMV 166
               +G +   +L+   +   W  I   P +P ++ +   GF  +       LFV GG  
Sbjct: 80  -RDISGGVFLHMLNPFSSRRSWKRINDYPYIPMREGM---GFAVLG----KRLFVLGG-C 130

Query: 167 SDVDCPLDLVLKYEMQKNRW-TVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAE 225
             ++   D +  Y+   N W  V+  + T R +FA   + G I   GG   +     + +
Sbjct: 131 GWLEDATDEIYCYDAAMNTWFDVVPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTWD 190

Query: 226 VLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM 285
           + DP+    ++ + +       D+ V+DG++ +  G            VY  S+  WE M
Sbjct: 191 IYDPLTRTCKSCSDVNIVPEMEDSFVMDGRIYIRGG-----VGGSSTAVYSASSGIWERM 245

Query: 286 AVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIE--GPPLPEQICKPFAV 343
              +  GW G +VVV   L+V+ +    KL ++   T  W  I      + +Q C+  ++
Sbjct: 246 DDDMASGWRGPAVVVAGDLYVLDQTFGAKLTMWCKDTRMWIHIGKLSQLVMKQPCRLVSI 305

Query: 344 NACDCRVYVVGRNLHVAV 361
                 ++V+G++    V
Sbjct: 306 GN---SIFVIGKDCSTVV 320

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ04|SKIP6_ARATH F-box/kelch-repeat protein SKIP6 OS=Arabidopsis thaliana GN=SKIP6 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 123/303 (40%), Gaps = 25/303 (8%)

Query: 52  FIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFA 111
            IP L +DVAL+CL R+P   H    ++  +    L      +  R  +G  +  L+V  
Sbjct: 20  LIPLLSEDVALSCLARVP-RCHYPILSLVSKTFRSLPTSPLLYATRALVGATENILYVAI 78

Query: 112 FHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPH----GFRCVSIPREGTLFVCGGMVS 167
                    W  L        T   M      CP     G   V +  E  ++V GG + 
Sbjct: 79  RIPPESGACWFTLLHRTLSNSTNSKMLVPIPSCPSPSLVGSAYVVVDSE--IYVIGGSIR 136

Query: 168 DVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLF--ELDSAE 225
           DV  P   V   + + + W  ++ M   R F A+GVI G IYV GG   D +   ++ AE
Sbjct: 137 DV--PSSSVWVLDCRFHTWRRVSNMRVGREFAAAGVIDGKIYVIGGCVVDNWARSINWAE 194

Query: 226 VLDPVKGNWRTIASMGTNMAS---YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW 282
           + D     W  +AS G  +     + +AV++GK+               G VY+P    W
Sbjct: 195 MFDIKTQTWEPVASPGMEVREKWMHASAVMEGKVYA--------MADRNGVVYEPKEKKW 246

Query: 283 ESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEG-PPLPEQICKPF 341
           E     L  GW G + V+   L+    L   K++ YDP    W  ++G   LP+ +C   
Sbjct: 247 EMPEKRLDLGWRGRACVIENILYCYDYLG--KIRGYDPKERIWRELKGVESLPKFLCGAT 304

Query: 342 AVN 344
             N
Sbjct: 305 MAN 307

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	402
225443880	405	PREDICTED: F-box/kelch-repeat protein At	1.0	0.992	0.864	0.0
356549104	405	PREDICTED: F-box/kelch-repeat protein At	1.0	0.992	0.856	0.0
356555524	405	PREDICTED: F-box/kelch-repeat protein At	1.0	0.992	0.854	0.0
449463901	405	PREDICTED: F-box/kelch-repeat protein At	1.0	0.992	0.849	0.0
224091599	405	predicted protein [Populus trichocarpa]	1.0	0.992	0.851	0.0
255557273	465	Protein AFR, putative [Ricinus communis]	1.0	0.864	0.871	0.0
357447265	405	F-box/kelch-repeat protein [Medicago tru	1.0	0.992	0.812	0.0
297851436	398	kelch repeat-containing F-box family pro	0.987	0.997	0.741	1e-179
18397351	398	F-box/kelch-repeat protein [Arabidopsis	0.987	0.997	0.739	1e-179
297740731	429	unnamed protein product [Vitis vinifera]	0.778	0.729	0.878	1e-168

>gi|225443880|ref|XP_002277472.1| PREDICTED: F-box/kelch-repeat protein At1g30090 [Vitis vinifera] gi|147822560|emb|CAN75078.1| hypothetical protein VITISV_005005 [Vitis vinifera]

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/405 (86%), Positives = 374/405 (92%), Gaps = 3/405 (0%)

Query: 1   MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRAEPFIPGLPDDV 60
           MQRVR+SSQQAPVHKLGDSQMTLSPKFRLAVIQS+LLNPS ELE SLR EP IPGLPDD+
Sbjct: 1   MQRVRISSQQAPVHKLGDSQMTLSPKFRLAVIQSNLLNPSLELELSLRGEPLIPGLPDDI 60

Query: 61  ALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQ 120
           ALNCLLRLPV+SHAACRAVCKRWHLLLGNKERFFTRRKELGF+DPWLFVFAFHKCTGKIQ
Sbjct: 61  ALNCLLRLPVQSHAACRAVCKRWHLLLGNKERFFTRRKELGFQDPWLFVFAFHKCTGKIQ 120

Query: 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180
           WQVLDL H+ WHTIPAMPCKDKVCPHGFRCVSIP EG LFVCGGMVSDVDCPLDLVLKYE
Sbjct: 121 WQVLDLNHFSWHTIPAMPCKDKVCPHGFRCVSIPHEGALFVCGGMVSDVDCPLDLVLKYE 180

Query: 181 MQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM 240
           MQKNRWTVM++MITARSFFA+GVI GMIY AGG+S+DLFELD AEVLDPVKG W  IASM
Sbjct: 181 MQKNRWTVMSQMITARSFFATGVIDGMIYAAGGNSSDLFELDLAEVLDPVKGIWSPIASM 240

Query: 241 GTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV 300
           GTNMASYDAAVL+GKLLVTEGWLWPFFVSPRGQVYDP T+NWE+MA GLREGWTGSSVVV
Sbjct: 241 GTNMASYDAAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTNNWENMAAGLREGWTGSSVVV 300

Query: 301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVA 360
           Y HLFVVSE ERMKLKVYD  +D+WET+EGP LPEQICKPF+VNACDC++YVVGRNLHVA
Sbjct: 301 YGHLFVVSEHERMKLKVYDMESDNWETVEGPALPEQICKPFSVNACDCKIYVVGRNLHVA 360

Query: 361 VGHITRLS---TSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA 402
           VGHI RL+     EK WSF V+W VVDAP+ F+DLTPSSSQVLFA
Sbjct: 361 VGHIWRLNQKGNCEKNWSFGVRWHVVDAPEAFADLTPSSSQVLFA 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549104|ref|XP_003542937.1| PREDICTED: F-box/kelch-repeat protein At1g30090-like [Glycine max]

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/405 (85%), Positives = 373/405 (92%), Gaps = 3/405 (0%)

Query: 1   MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRAEPFIPGLPDDV 60
           MQRVR SSQQAPVHKLGD QMTLSPKFRLAVIQS+L NPSPELE SLR EP IPGLPDDV
Sbjct: 1   MQRVRFSSQQAPVHKLGDPQMTLSPKFRLAVIQSALANPSPELELSLREEPLIPGLPDDV 60

Query: 61  ALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQ 120
           ALNCLLRLPV+SH++CRAVCKRWH+LLGNKERFFT RK+ G KDPWLFVFA+HKCTGKIQ
Sbjct: 61  ALNCLLRLPVQSHSSCRAVCKRWHMLLGNKERFFTNRKQFGLKDPWLFVFAYHKCTGKIQ 120

Query: 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180
           WQVLDLTH+ WHTIPAMPCKDKVCPHGFRCVSIP +GTLFVCGGMVSDVDCPLDLVLKYE
Sbjct: 121 WQVLDLTHFSWHTIPAMPCKDKVCPHGFRCVSIPPDGTLFVCGGMVSDVDCPLDLVLKYE 180

Query: 181 MQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM 240
           MQKNRWTVMN+MITARSFFASGVI GMIYVAGG+S DL+ELDSAEVLDP  G+W  IA M
Sbjct: 181 MQKNRWTVMNRMITARSFFASGVIDGMIYVAGGNSTDLYELDSAEVLDPFNGSWHPIAYM 240

Query: 241 GTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV 300
           GTNMASYDAAVL+GKLLVTEGWLWPF+VSPRGQVYDP T+NWE+MAVGLREGWTGSSVVV
Sbjct: 241 GTNMASYDAAVLNGKLLVTEGWLWPFYVSPRGQVYDPRTNNWENMAVGLREGWTGSSVVV 300

Query: 301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVA 360
           Y HLFVVSELERMKLKVY+P  DSWE IEGPPLPEQICKPFAVNACDC +YVVGRNL VA
Sbjct: 301 YGHLFVVSELERMKLKVYEPENDSWEAIEGPPLPEQICKPFAVNACDCHIYVVGRNLLVA 360

Query: 361 VGHITRLSTSE---KKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA 402
           VGHITRL+  E   +KW+FSV+W V+DAP++ SDLTPSSSQVLFA
Sbjct: 361 VGHITRLNPKESCKEKWNFSVRWHVIDAPESLSDLTPSSSQVLFA 405

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555524|ref|XP_003546081.1| PREDICTED: F-box/kelch-repeat protein At1g30090-like [Glycine max]

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/405 (85%), Positives = 374/405 (92%), Gaps = 3/405 (0%)

Query: 1   MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRAEPFIPGLPDDV 60
           MQRVR SSQQAPVHKLGD QMTLSPKFRLAVIQSSL NPSPELE SLR EP IPGLPDDV
Sbjct: 1   MQRVRFSSQQAPVHKLGDPQMTLSPKFRLAVIQSSLANPSPELELSLREEPLIPGLPDDV 60

Query: 61  ALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQ 120
           ALNCLLRLPV+SH++CRAVCKRWH+LLGNKERFFT RK+ G KDPWLFVFA+HKCTGKI+
Sbjct: 61  ALNCLLRLPVQSHSSCRAVCKRWHMLLGNKERFFTNRKQFGLKDPWLFVFAYHKCTGKIK 120

Query: 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180
           WQVLDLTH+ WHTIPAMPCKDKVCPHGFRCVSIP +GTLFVCGGMVSDVDCPLDLVLKYE
Sbjct: 121 WQVLDLTHFSWHTIPAMPCKDKVCPHGFRCVSIPCDGTLFVCGGMVSDVDCPLDLVLKYE 180

Query: 181 MQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM 240
           MQKNRWTVMN+MITARSFFASGVI GMIYVAGG+S DL+ELDSAEVLDP+ G+WR IA+M
Sbjct: 181 MQKNRWTVMNRMITARSFFASGVIDGMIYVAGGNSTDLYELDSAEVLDPLNGSWRPIANM 240

Query: 241 GTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV 300
           GTNMASYDAAVL+GKLLVTEGWLWPF+VSPRGQVYDP T+NWE+MAVGLREGWTGSSVVV
Sbjct: 241 GTNMASYDAAVLNGKLLVTEGWLWPFYVSPRGQVYDPRTNNWENMAVGLREGWTGSSVVV 300

Query: 301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVA 360
           Y HLFVVSELERMKLKVYDP TDSWE IEG PLPEQI KPFAVNACDC +YVVG+NL V 
Sbjct: 301 YGHLFVVSELERMKLKVYDPETDSWEAIEGLPLPEQIRKPFAVNACDCHIYVVGQNLVVG 360

Query: 361 VGHITRLSTSE---KKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA 402
           VGHITRL+  E   +KW+FSV+W V+DAP++ SDLTPSSSQVLFA
Sbjct: 361 VGHITRLNPKESCKEKWNFSVRWHVIDAPESVSDLTPSSSQVLFA 405

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463901|ref|XP_004149669.1| PREDICTED: F-box/kelch-repeat protein At1g30090-like [Cucumis sativus]

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/405 (84%), Positives = 373/405 (92%), Gaps = 3/405 (0%)

Query: 1   MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRAEPFIPGLPDDV 60
           MQRVRLSSQQ PV KLGDSQMTLSPKFRLA+I+S LLNPS +LE+S+  EP IPGLPDDV
Sbjct: 1   MQRVRLSSQQTPVLKLGDSQMTLSPKFRLAIIKSHLLNPSSDLESSICGEPLIPGLPDDV 60

Query: 61  ALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQ 120
           ALNCLLRLPV SHAACR VCKRWH LLG+KERFFTRRKELGFK+PWLFVFAFHKCTGKIQ
Sbjct: 61  ALNCLLRLPVHSHAACRVVCKRWHQLLGSKERFFTRRKELGFKEPWLFVFAFHKCTGKIQ 120

Query: 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180
           WQVLDLTH+ WH+IP MPCKDKVCPHGFRCVSIP EGTLFVCGGMVSDVDCPLDLVLKYE
Sbjct: 121 WQVLDLTHFSWHSIPLMPCKDKVCPHGFRCVSIPHEGTLFVCGGMVSDVDCPLDLVLKYE 180

Query: 181 MQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM 240
           MQKNRWTVMN+MITARSFFASGVI G IYVAGG+S DLFELDSAEVLDP++GNW ++ASM
Sbjct: 181 MQKNRWTVMNQMITARSFFASGVIDGKIYVAGGNSTDLFELDSAEVLDPIQGNWNSVASM 240

Query: 241 GTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV 300
           GTNMASYDAAVL+GKLLVTEGWLWPF+V+PRGQVYDP+T+NWE+MA+GLREGWTGSSVVV
Sbjct: 241 GTNMASYDAAVLNGKLLVTEGWLWPFYVAPRGQVYDPTTNNWETMAIGLREGWTGSSVVV 300

Query: 301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVA 360
           Y HLFVVSELERMKLKVYD ++DSWE IEGPPLPEQICKPFAVNACD  +YVVGRNLHVA
Sbjct: 301 YGHLFVVSELERMKLKVYDAASDSWEAIEGPPLPEQICKPFAVNACDSTIYVVGRNLHVA 360

Query: 361 VGHITRL---STSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA 402
           VG I++L    T E KWSF+V W VVDAP+ FSDLTPSSSQVLFA
Sbjct: 361 VGRISQLIKKGTCENKWSFNVSWHVVDAPECFSDLTPSSSQVLFA 405

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091599|ref|XP_002309296.1| predicted protein [Populus trichocarpa] gi|222855272|gb|EEE92819.1| predicted protein [Populus trichocarpa]

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/405 (85%), Positives = 371/405 (91%), Gaps = 3/405 (0%)

Query: 1   MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRAEPFIPGLPDDV 60
           MQRVRLSSQQAPVHKLGDSQ+TLSPKFR+ VIQSSLLNPSPE E+SL+ EP IPGLPDD+
Sbjct: 1   MQRVRLSSQQAPVHKLGDSQITLSPKFRVGVIQSSLLNPSPEFESSLQCEPLIPGLPDDI 60

Query: 61  ALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQ 120
           ALNCLLR+PV+SHAAC+AVCKRWHLLLGNKERFFTRRKELGFKDPWLFVF+FHKCTGKIQ
Sbjct: 61  ALNCLLRVPVQSHAACKAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFSFHKCTGKIQ 120

Query: 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180
           WQVLDL ++ WHTIPAMPCK KVCPHGFRCVS+  +GTLFVCGGMVSDVD PLDLVLKYE
Sbjct: 121 WQVLDLINFSWHTIPAMPCKHKVCPHGFRCVSVAHDGTLFVCGGMVSDVDFPLDLVLKYE 180

Query: 181 MQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM 240
           MQKNRWTVMN+MITARSFFASGVI GMIYVAGG+S+DLFELDSAEVLDPVKGNWR IA+M
Sbjct: 181 MQKNRWTVMNRMITARSFFASGVIEGMIYVAGGNSSDLFELDSAEVLDPVKGNWRRIANM 240

Query: 241 GTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV 300
           GTNMASYDAAVLDGKLLVTEGWLWPFF SPRGQ+YDP TD WE+MA GLREGWTGSSVVV
Sbjct: 241 GTNMASYDAAVLDGKLLVTEGWLWPFFFSPRGQIYDPRTDKWENMAFGLREGWTGSSVVV 300

Query: 301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVA 360
           Y  LFVVS+LERMKLKVYD  +DSWETIEG PLPEQI KPFAVNA DC++YVVGRNLHV 
Sbjct: 301 YGRLFVVSDLERMKLKVYDAESDSWETIEGSPLPEQISKPFAVNAWDCKIYVVGRNLHVV 360

Query: 361 VGHITRLSTS---EKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA 402
           VGHI+RL      EKKW FSV+W VVD PD+F DLTPSSSQVLFA
Sbjct: 361 VGHISRLQQKGICEKKWGFSVRWHVVDPPDSFCDLTPSSSQVLFA 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557273|ref|XP_002519667.1| Protein AFR, putative [Ricinus communis] gi|223541084|gb|EEF42640.1| Protein AFR, putative [Ricinus communis]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/405 (87%), Positives = 373/405 (92%), Gaps = 3/405 (0%)

Query: 1   MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRAEPFIPGLPDDV 60
           MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAV+QSSLL+ S E E +L+ EPFIPGLPDDV
Sbjct: 61  MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAVVQSSLLSSSSESELALQGEPFIPGLPDDV 120

Query: 61  ALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQ 120
           ALNCLLRLPV+SHA+CRAVCKRWHLLLGNKERFFTRRKELGF DPWL+VFAF KCTGKIQ
Sbjct: 121 ALNCLLRLPVQSHASCRAVCKRWHLLLGNKERFFTRRKELGFNDPWLYVFAFRKCTGKIQ 180

Query: 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180
           WQVLDLTH+ WHTIPAMPCKDKVCPHGFRC SIP +GTLFVCGGMVSDVDCPLDLVLKYE
Sbjct: 181 WQVLDLTHFLWHTIPAMPCKDKVCPHGFRCASIPLDGTLFVCGGMVSDVDCPLDLVLKYE 240

Query: 181 MQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM 240
           MQKNRWTVMN+MI ARSFFAS  I GMIYVAGG+S DLFELDSAEV DPVKGNW++IASM
Sbjct: 241 MQKNRWTVMNQMIAARSFFASAAINGMIYVAGGNSTDLFELDSAEVFDPVKGNWQSIASM 300

Query: 241 GTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV 300
           GTNMASYDAAVLDGKLLVTEGWLWPF+VSPRGQVYDP TD WE+MAVGLREGWTGSSVVV
Sbjct: 301 GTNMASYDAAVLDGKLLVTEGWLWPFYVSPRGQVYDPRTDRWENMAVGLREGWTGSSVVV 360

Query: 301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVA 360
           Y  LFVVSELERMKLKVYD   DSWETIEGPPLPEQICKPFAVNACDC++YVVGRNLHVA
Sbjct: 361 YGRLFVVSELERMKLKVYDMDNDSWETIEGPPLPEQICKPFAVNACDCKIYVVGRNLHVA 420

Query: 361 VGHITRL---STSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA 402
           VGHIT+L   +T  K+WSFSV W VVD PD FSDLTPSSSQVLFA
Sbjct: 421 VGHITKLKQNTTCGKRWSFSVTWHVVDPPDIFSDLTPSSSQVLFA 465

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447265|ref|XP_003593908.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355482956|gb|AES64159.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/405 (81%), Positives = 370/405 (91%), Gaps = 3/405 (0%)

Query: 1   MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAVIQSSLLNPSPELEASLRAEPFIPGLPDDV 60
           MQRVR SSQQAPVHKLGD QMTLSPKFRLAV+QS+L +  PEL+ SLR E  IPGLPDDV
Sbjct: 1   MQRVRFSSQQAPVHKLGDPQMTLSPKFRLAVVQSNLTSQMPELDHSLREELLIPGLPDDV 60

Query: 61  ALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQ 120
           ALNCLLRLPV+SH++CRAVCKRWH+LLGNKERFFT RK++GFKDPWLFVFA+HKCTGKIQ
Sbjct: 61  ALNCLLRLPVQSHSSCRAVCKRWHMLLGNKERFFTNRKQMGFKDPWLFVFAYHKCTGKIQ 120

Query: 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180
           WQVLDLTH+ WHTIPAMPCKDKVCPHGFRCVS+P +GTL+VCGGMVSDVDCPLDLVLKYE
Sbjct: 121 WQVLDLTHFSWHTIPAMPCKDKVCPHGFRCVSMPHDGTLYVCGGMVSDVDCPLDLVLKYE 180

Query: 181 MQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM 240
           + KNRWTVMN+MI+ARSFFASGVI GM+Y AGG+S DL+ELDSAEVLDP+ GNWR IA+M
Sbjct: 181 ITKNRWTVMNRMISARSFFASGVIDGMVYAAGGNSTDLYELDSAEVLDPISGNWRAIANM 240

Query: 241 GTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV 300
           GTNMASYDAAVL+GKLLVTEGWLWPF+VSPRGQVYDP T++WE+MAVGLREGWTGSSVVV
Sbjct: 241 GTNMASYDAAVLNGKLLVTEGWLWPFYVSPRGQVYDPRTNSWETMAVGLREGWTGSSVVV 300

Query: 301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVA 360
           Y HLFVVSELERMKLKVY+   DSWE I+G PLPEQICKPFAVNACDC++YVVGRNL VA
Sbjct: 301 YGHLFVVSELERMKLKVYNQEADSWEAIDGSPLPEQICKPFAVNACDCQIYVVGRNLLVA 360

Query: 361 VGHITRLSTSE---KKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA 402
           VGHI++L+  E   +KW+F VQW V++AP + S+LTPSSSQVLFA
Sbjct: 361 VGHISKLNPKESCKEKWNFGVQWHVIEAPKSLSNLTPSSSQVLFA 405

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851436|ref|XP_002893599.1| kelch repeat-containing F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297339441|gb|EFH69858.1| kelch repeat-containing F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 299/403 (74%), Positives = 349/403 (86%), Gaps = 6/403 (1%)

Query: 1   MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAV-IQSSLLNPSPELEASLRAEPFIPGLPDD 59
           MQRVR+SSQ+A VHKLGDSQMTLSPKFR+A  IQS+L + S ELE SL  EP IPGLPDD
Sbjct: 1   MQRVRVSSQRAAVHKLGDSQMTLSPKFRVAASIQSTLFDRSSELELSLIGEPLIPGLPDD 60

Query: 60  VALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKI 119
           VALNCLLR+PV+SH + R+VCKRWHLL G KE FF +RKE GFKDPWLFV  F +CTGKI
Sbjct: 61  VALNCLLRVPVQSHVSSRSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVVGFSRCTGKI 120

Query: 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKY 179
           QW+VLDL +  WH IPAMPC+DKVCPHGFR VS+PREGT+FVCGGMVSD DCPLDLVLKY
Sbjct: 121 QWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREGTMFVCGGMVSDSDCPLDLVLKY 180

Query: 180 EMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS 239
           +M +N WTV NKMITARSFFASGVI GMIY AGG++ADL+ELDSAEVL+P+ GNWR +++
Sbjct: 181 DMVRNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYELDSAEVLNPLDGNWRPVSN 240

Query: 240 MGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV 299
           M  +MASYDAAVL+GKLLVTEGWLWPFFVSPRGQVYDP TD WE+M++GLREGWTG+SVV
Sbjct: 241 MVAHMASYDAAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTDQWETMSMGLREGWTGTSVV 300

Query: 300 VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV 359
           +Y+ LF+VSELERMK+KVYDP TDSWETI GP LPEQIC+PFAVN    RVYVVGRNLH+
Sbjct: 301 IYDRLFIVSELERMKMKVYDPVTDSWETINGPELPEQICRPFAVNCYGNRVYVVGRNLHL 360

Query: 360 AVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA 402
           AVG+I +   SE K  F V+W+VV++P+ ++D+TPS+SQ+LFA
Sbjct: 361 AVGNIWQ---SENK--FGVRWEVVESPERYADITPSNSQILFA 398

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397351|ref|NP_564347.1| F-box/kelch-repeat protein [Arabidopsis thaliana] gi|75169209|sp|Q9C6Z0.1|FBK17_ARATH RecName: Full=F-box/kelch-repeat protein At1g30090 gi|12321630|gb|AAG50856.1|AC074176_5 unknown protein [Arabidopsis thaliana] gi|16209717|gb|AAL14414.1| At1g30090/T2H7_11 [Arabidopsis thaliana] gi|27363226|gb|AAO11532.1| At1g30090/T2H7_11 [Arabidopsis thaliana] gi|332193056|gb|AEE31177.1| F-box/kelch-repeat protein [Arabidopsis thaliana]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 298/403 (73%), Positives = 349/403 (86%), Gaps = 6/403 (1%)

Query: 1   MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAV-IQSSLLNPSPELEASLRAEPFIPGLPDD 59
           MQRVR+SSQ+A VHKLGDSQMTLSPKFR+A  IQS+L + S ELE SLR EP IPGLPDD
Sbjct: 1   MQRVRVSSQRAVVHKLGDSQMTLSPKFRVAASIQSTLFDRSSELELSLRGEPLIPGLPDD 60

Query: 60  VALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKI 119
           VALNCLLR+PV+SH + ++VCKRWHLL G KE FF +RKE GFKDPWLFV  F +CTGKI
Sbjct: 61  VALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVVGFSRCTGKI 120

Query: 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKY 179
           QW+VLDL +  WH IPAMPC+DKVCPHGFR VS+PREGT+FVCGGMVSD DCPLDLVLKY
Sbjct: 121 QWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREGTMFVCGGMVSDSDCPLDLVLKY 180

Query: 180 EMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS 239
           +M KN WTV NKMITARSFFASGVI GMIY AGG++ADL+ELD AEVL+P+ GNWR +++
Sbjct: 181 DMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYELDCAEVLNPLDGNWRPVSN 240

Query: 240 MGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV 299
           M  +MASYD AVL+GKLLVTEGWLWPFFVSPRGQVYDP TD WE+M++GLREGWTG+SVV
Sbjct: 241 MVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTDQWETMSMGLREGWTGTSVV 300

Query: 300 VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV 359
           +Y+ LF+VSELERMK+KVYDP TDSWETI GP LPEQIC+PFAVN    RVYVVGRNLH+
Sbjct: 301 IYDRLFIVSELERMKMKVYDPVTDSWETINGPELPEQICRPFAVNCYGNRVYVVGRNLHL 360

Query: 360 AVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA 402
           AVG+I +   SE K  F+V+W+VV++P+ ++D+TPS+SQ+LFA
Sbjct: 361 AVGNIWQ---SENK--FAVRWEVVESPERYADITPSNSQILFA 398

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740731|emb|CBI30913.3| unnamed protein product [Vitis vinifera]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 275/313 (87%), Positives = 294/313 (93%)

Query: 50  EPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFV 109
           +P IPGLPDD+ALNCLLRLPV+SHAACRAVCKRWHLLLGNKERFFTRRKELGF+DPWLFV
Sbjct: 60  KPLIPGLPDDIALNCLLRLPVQSHAACRAVCKRWHLLLGNKERFFTRRKELGFQDPWLFV 119

Query: 110 FAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV 169
           FAFHKCTGKIQWQVLDL H+ WHTIPAMPCKDKVCPHGFRCVSIP EG LFVCGGMVSDV
Sbjct: 120 FAFHKCTGKIQWQVLDLNHFSWHTIPAMPCKDKVCPHGFRCVSIPHEGALFVCGGMVSDV 179

Query: 170 DCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDP 229
           DCPLDLVLKYEMQKNRWTVM++MITARSFFA+GVI GMIY AGG+S+DLFELD AEVLDP
Sbjct: 180 DCPLDLVLKYEMQKNRWTVMSQMITARSFFATGVIDGMIYAAGGNSSDLFELDLAEVLDP 239

Query: 230 VKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL 289
           VKG W  IASMGTNMASYDAAVL+GKLLVTEGWLWPFFVSPRGQVYDP T+NWE+MA GL
Sbjct: 240 VKGIWSPIASMGTNMASYDAAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTNNWENMAAGL 299

Query: 290 REGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCR 349
           REGWTGSSVVVY HLFVVSE ERMKLKVYD  +D+WET+EGP LPEQICKPF+VNACDC+
Sbjct: 300 REGWTGSSVVVYGHLFVVSEHERMKLKVYDMESDNWETVEGPALPEQICKPFSVNACDCK 359

Query: 350 VYVVGRNLHVAVG 362
           +YVVGRNLHVAV 
Sbjct: 360 IYVVGRNLHVAVA 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	402
TAIR|locus:2198304	398	AT1G30090 "AT1G30090" [Arabido	0.987	0.997	0.739	1.4e-167
TAIR|locus:2046683	372	AFR "ATTENUATED FAR-RED RESPON	0.883	0.954	0.390	2.7e-68
TAIR|locus:2035696	434	AT1G55270 "AT1G55270" [Arabido	0.659	0.610	0.341	5.7e-36
TAIR|locus:2008773	376	AT1G67480 "AT1G67480" [Arabido	0.708	0.757	0.3	1e-27
TAIR|locus:2030601	475	AT1G22040 "AT1G22040" [Arabido	0.308	0.261	0.359	3.8e-21
TAIR|locus:2175143	393	AT5G60570 "AT5G60570" [Arabido	0.674	0.689	0.288	2.3e-20
TAIR|locus:2015979	346	AT1G27420 "AT1G27420" [Arabido	0.671	0.780	0.275	9.1e-19
TAIR|locus:2098926	358	SKIP4 "AT3G61350" [Arabidopsis	0.726	0.815	0.25	3.9e-17
TAIR|locus:2052596	372	SKIP6 "AT2G21950" [Arabidopsis	0.721	0.779	0.274	6.2e-16
TAIR|locus:2077299	352	AT3G63220 "AT3G63220" [Arabido	0.629	0.718	0.291	7.9e-16

TAIR|locus:2198304 AT1G30090 "AT1G30090" [Arabidopsis thaliana (taxid:3702)]

 Score = 1630 (578.8 bits), Expect = 1.4e-167, P = 1.4e-167
 Identities = 298/403 (73%), Positives = 349/403 (86%)

Query:     1 MQRVRLSSQQAPVHKLGDSQMTLSPKFRLAV-IQSSLLNPSPELEASLRAEPFIPGLPDD 59
             MQRVR+SSQ+A VHKLGDSQMTLSPKFR+A  IQS+L + S ELE SLR EP IPGLPDD
Sbjct:     1 MQRVRVSSQRAVVHKLGDSQMTLSPKFRVAASIQSTLFDRSSELELSLRGEPLIPGLPDD 60

Query:    60 VALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKI 119
             VALNCLLR+PV+SH + ++VCKRWHLL G KE FF +RKE GFKDPWLFV  F +CTGKI
Sbjct:    61 VALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVVGFSRCTGKI 120

Query:   120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKY 179
             QW+VLDL +  WH IPAMPC+DKVCPHGFR VS+PREGT+FVCGGMVSD DCPLDLVLKY
Sbjct:   121 QWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREGTMFVCGGMVSDSDCPLDLVLKY 180

Query:   180 EMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS 239
             +M KN WTV NKMITARSFFASGVI GMIY AGG++ADL+ELD AEVL+P+ GNWR +++
Sbjct:   181 DMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYELDCAEVLNPLDGNWRPVSN 240

Query:   240 MGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV 299
             M  +MASYD AVL+GKLLVTEGWLWPFFVSPRGQVYDP TD WE+M++GLREGWTG+SVV
Sbjct:   241 MVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTDQWETMSMGLREGWTGTSVV 300

Query:   300 VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV 359
             +Y+ LF+VSELERMK+KVYDP TDSWETI GP LPEQIC+PFAVN    RVYVVGRNLH+
Sbjct:   301 IYDRLFIVSELERMKMKVYDPVTDSWETINGPELPEQICRPFAVNCYGNRVYVVGRNLHL 360

Query:   360 AVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA 402
             AVG+I +   SE K  F+V+W+VV++P+ ++D+TPS+SQ+LFA
Sbjct:   361 AVGNIWQ---SENK--FAVRWEVVESPERYADITPSNSQILFA 398

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046683 AFR "ATTENUATED FAR-RED RESPONSE" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 144/369 (39%), Positives = 206/369 (55%)

Query:    37 LNPSPELEASLRAEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTR 96
             +N   E E   +++P I GLP+D+A  CLLRLP   HA  R+V   W+  + N  RF   
Sbjct:    13 INDQAEEETRTKSQPLISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNP-RFLFS 71

Query:    97 RKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCK-DKVC-PHGFRCVSIP 154
             ++ L    P+LFVFAF+K T +IQWQ LDL    W  +P MP    K+  PH   C S+P
Sbjct:    72 KQSLSISSPYLFVFAFNKSTARIQWQSLDLASGRWFVLPPMPNSFTKISSPHALSCASMP 131

Query:   155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGS 214
             R+G LFV GG   DV+      + Y    NRW+ ++ M++ R++F SG + G I   GGS
Sbjct:   132 RQGKLFVLGG--GDVNRS---AVVYTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGS 186

Query:   215 SADLFELDS-AEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQ 273
                  E  +  E  DP    W  +  +   +A YD+AV+  ++ VTEGW WPF   P GQ
Sbjct:   187 VGGNGEATTEVESYDPDNDTWTVVKKLPMVLAKYDSAVIGKEMCVTEGWAWPFMFPPMGQ 246

Query:   274 VYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPL 333
             VYD     W  M+ G++EGWTG SVV+ + LFV+SE     +KVY    D+W  + G  L
Sbjct:   247 VYDSDEGTWREMSGGMKEGWTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKL 306

Query:   334 P-EQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDL 392
               E++ +PFAV   D RV+VV   ++VA G ++     +    FSV+W++V +P +    
Sbjct:   307 QGEKMRRPFAVTGADDRVFVVASGINVAEGRVSEGQNGD----FSVEWRMVSSPKSSIQF 362

Query:   393 TPSSSQVLF 401
             +P+S  VL+
Sbjct:   363 SPASCHVLY 371

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009585 "red, far-red light phototransduction" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2035696 AT1G55270 "AT1G55270" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 95/278 (34%), Positives = 137/278 (49%)

Query:    51 PFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLL-GNKERFFTRRKELGFKDPWLFV 109
             P +PGLPDD+A+ CL+R+P   H   R VCKRW+ L  GN   F+++RK LG  + W++V
Sbjct:    77 PLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNF--FYSQRKLLGMSEEWVYV 134

Query:   110 FAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGT-LFVCGGMVSD 168
             F   +  GKI W   D     W  +P +P ++     GF C  +   G  L++ GG    
Sbjct:   135 FKRDR-DGKISWNTFDPISQLWQPLPPVP-REYSEAVGFGCAVL--SGCHLYLFGGK-DP 189

Query:   169 VDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFE-LDSAEVL 227
             +   +  V+ Y  + N+W     M+  R FF   VI   +YVAGG    +   L SAEV 
Sbjct:   190 LRGSMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAEVY 249

Query:   228 DPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV 287
             DP K  W  IA M T M      V D K  +         +S   + YDP  ++W  ++ 
Sbjct:   250 DPNKNRWSFIADMSTAMVPLIGVVYDKKWFLKGLGSHQLVMS---EAYDPEVNSWSPVSD 306

Query:   288 GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSW 325
             G+  GW      +   L+ +   +  KL+V+D STDSW
Sbjct:   307 GMVAGWRNPCTSLNGRLYGLDCRDGCKLRVFDESTDSW 344

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2008773 AT1G67480 "AT1G67480" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 90/300 (30%), Positives = 137/300 (45%)

Query:    37 LNPSPELEASLRAEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTR 96
             L+    L  +   +P IPGLPDDVA  CL  +P     +  +VCK+W  ++ +KE F T 
Sbjct:    24 LDLGSRLSENFMDDPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKE-FITV 82

Query:    97 RKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPRE 156
             R+  G  + WL+V   +      +W+V+D       ++P MP   K    GF+ V +  +
Sbjct:    83 RRLAGMLEEWLYVLTMNAGGKDNRWEVMDCLGQKLSSLPPMPGPAKT---GFKVVVV--D 137

Query:   157 GTLFVCGG--MVS-DVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGG 213
             G L V  G  M++  +    D V +Y+   N W+ +  +  AR  FA   + G +YV GG
Sbjct:   138 GKLLVIAGCCMINGSLVASAD-VYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGG 196

Query:   214 SSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFV--SPR 271
                D   L SAEV DP    W  I S+        A+  +GKL V  G    F +  S  
Sbjct:   197 HGVDGESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYVMGGRS-NFTIGNSKL 255

Query:   272 GQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGP 331
               VY+    +W     GL      + V V + LF +      K+ V++   ++WE +  P
Sbjct:   256 LDVYNTQCGSWHGSKNGLT--MVTAHVEVGKKLFCIDWKNHRKMSVFNAEDETWEVVALP 313

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2030601 AT1G22040 "AT1G22040" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
 Identities = 55/153 (35%), Positives = 73/153 (47%)

Query:   203 VIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASY--DAAVLD------- 253
             V+GG+    GG S     L SAEV DP    W  + SM  + A    +A + D       
Sbjct:   232 VVGGVDRGRGGLSP----LQSAEVYDPSTDAWSEVPSMPFSKAQVLPNAFLADLLKPIAT 287

Query:   254 ------GKLLVTEG-WLWPFFVSPRGQVYDPSTDNWESMAVGLREGW------TGSSVVV 300
                   G+L V +  + WPFFV   G+VYDP T+ W  M  G+ EGW      T  SVVV
Sbjct:   288 GMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWVEMPSGMGEGWPARQAGTKLSVVV 347

Query:   301 YEHLFVV---SELERMKLKVYDPSTDSWETIEG 330
                L+     S +E  K+KVYD   D+W+ + G
Sbjct:   348 DGELYAFDPSSSMENGKIKVYDQKEDTWKVVIG 380

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2175143 AT5G60570 "AT5G60570" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 2.3e-20, P = 2.3e-20
 Identities = 84/291 (28%), Positives = 125/291 (42%)

Query:    49 AEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLF 108
             ++  +PGL DDVALNCL  +P   + +   V K+++ L+ N    F  RKELG  +  +F
Sbjct:    46 SDSVLPGLIDDVALNCLAWVPRSDYPSLSCVNKKYNKLI-NSGHLFALRKELGIVEYLVF 104

Query:   109 VFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD 168
             +     C  +  W +       W  +P MPC D+   H  +  S+  +  L V G  +  
Sbjct:   105 MV----CDPR-GWLMFSPMKKKWMVLPKMPC-DECFNHADK-ESLAVDDELLVFGRELFQ 157

Query:   169 VDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLD 228
                    + KY ++   W     M   R  FASG +GG+  VAGG+  +   L SAE+ D
Sbjct:   158 F-----AIWKYSLRSRCWVKCEGMHRPRCLFASGSLGGIAIVAGGTDMNGNILASAELYD 212

Query:   229 PVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW---ESM 285
                G W  + +M +         +DGK  V  G   P      G+ +D  T  W   E M
Sbjct:   213 SSSGRWEMLPNMHSPRRLCSGFFMDGKFYVIGGMSSPNVSVTFGEEFDLETRKWRKIEGM 272

Query:   286 AVGLREGWTGSS--VVVYEHLFVVSELERMKLKVYDPSTDSWETIEG-PPL 333
                +          VVV   LF +     M +K YD   + WE +   PP+
Sbjct:   273 YPNVNRAAQAPPLVVVVNNELFTLEYSTNM-VKKYDKVKNKWEVMGRLPPM 322

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015979 AT1G27420 "AT1G27420" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 9.1e-19, P = 9.1e-19
 Identities = 81/294 (27%), Positives = 122/294 (41%)

Query:    49 AEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLF 108
             + P IPGL DDVA  C+ ++P  S      VC+RW   L   + F   RK  G  + +L 
Sbjct:     7 SSPIIPGLTDDVAELCVSKIPRSSFQITSQVCRRWRSFL-RSQHFAAVRKLTGTVEEFLC 65

Query:   109 VFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMV-- 166
             V    +C   + W+V D +      IP +P   K    GF  V++   G +   GG    
Sbjct:    66 VLMESECGRDVYWEVFDASGNKLGQIPPVPGPLK---RGFG-VAVLDGGKIVFFGGYTEV 121

Query:   167 -------SDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLF 219
                    + V    D V +++   N W  +  M   R  FA   + G++YV  G S D +
Sbjct:   122 EGSGINSTTVSASAD-VYEFDPANNSWRKLAGMNIPRYNFAFAEVNGLLYVIRGYSTDTY 180

Query:   220 ELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLL-VTEGWLWPFFVSPRGQVYDPS 278
              L +AEV +P    W  +      +    A     KL  V  G     F+     +YDP 
Sbjct:   181 SLSNAEVYNPKTNQWSLMHCPNRPVWRGFAFAFSSKLYAVGNG---SRFID----IYDPK 233

Query:   279 TDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPP 332
             T  WE +    +     S  VV   ++ +      +L V+DP  +SW ++  PP
Sbjct:   234 TQTWEELN-SEQSVSVYSYTVVRNKVYFMDRNMPGRLGVFDPEENSWSSVFVPP 286

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098926 SKIP4 "AT3G61350" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.9e-17, P = 3.9e-17
 Identities = 79/316 (25%), Positives = 140/316 (44%)

Query:    53 IPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAF 112
             I G+PDD++ +CL R+P E H A + V +RW   + + E     R E    + W++    
Sbjct:    22 ISGVPDDISKSCLARVPREYHMAMKCVSRRWRDFVCSDE-MCDYRNEFNLAESWIYALC- 79

Query:   113 HKCTGKIQWQVLD--LTHYCWHTI---PAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVS 167
                +G +   +L+   +   W  I   P +P ++ +   GF  +   R   LFV GG   
Sbjct:    80 RDISGGVFLHMLNPFSSRRSWKRINDYPYIPMREGM---GFAVLG-KR---LFVLGGC-G 131

Query:   168 DVDCPLDLVLKYEMQKNRW-TVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEV 226
              ++   D +  Y+   N W  V+  + T R +FA   + G I   GG   +     + ++
Sbjct:   132 WLEDATDEIYCYDAAMNTWFDVVPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTWDI 191

Query:   227 LDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMA 286
              DP+    ++ + +       D+ V+DG++ +  G            VY  S+  WE M 
Sbjct:   192 YDPLTRTCKSCSDVNIVPEMEDSFVMDGRIYIRGG-----VGGSSTAVYSASSGIWERMD 246

Query:   287 VGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICK-PFAVNA 345
               +  GW G +VVV   L+V+ +    KL ++   T  W  I G  L + + K P  + +
Sbjct:   247 DDMASGWRGPAVVVAGDLYVLDQTFGAKLTMWCKDTRMWIHI-GK-LSQLVMKQPCRLVS 304

Query:   346 CDCRVYVVGRNLHVAV 361
                 ++V+G++    V
Sbjct:   305 IGNSIFVIGKDCSTVV 320

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009409 "response to cold" evidence=IEP

TAIR|locus:2052596 SKIP6 "AT2G21950" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 6.2e-16, P = 6.2e-16
 Identities = 88/321 (27%), Positives = 136/321 (42%)

Query:    29 LAVIQSSLLNPSPELEASLRAEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLG 88
             +A   SS   P PE ++  +    IP L +DVAL+CL R+P   H    ++  +    L 
Sbjct:     1 MAATTSSGDEP-PETKSPAQ---LIPLLSEDVALSCLARVP-RCHYPILSLVSKTFRSLP 55

Query:    89 NKERFFTRRKELGFKDPWLFV-FAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPH- 146
                  +  R  +G  +  L+V       +G   + +L  T     T   M      CP  
Sbjct:    56 TSPLLYATRALVGATENILYVAIRIPPESGACWFTLLHRT-LSNSTNSKMLVPIPSCPSP 114

Query:   147 ---GFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV 203
                G   V +  E  ++V GG + DV  P   V   + + + W  ++ M   R F A+GV
Sbjct:   115 SLVGSAYVVVDSE--IYVIGGSIRDV--PSSSVWVLDCRFHTWRRVSNMRVGREFAAAGV 170

Query:   204 IGGMIYVAGGSSADLF--ELDSAEVLDPVKGNWRTIASMGTNMAS---YDAAVLDGKLLV 258
             I G IYV GG   D +   ++ AE+ D     W  +AS G  +     + +AV++GK+  
Sbjct:   171 IDGKIYVIGGCVVDNWARSINWAEMFDIKTQTWEPVASPGMEVREKWMHASAVMEGKVYA 230

Query:   259 TEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVY 318
                          G VY+P    WE     L  GW G + V+   L+    L   K++ Y
Sbjct:   231 --------MADRNGVVYEPKEKKWEMPEKRLDLGWRGRACVIENILYCYDYLG--KIRGY 280

Query:   319 DPSTDSWETIEG-PPLPEQIC 338
             DP    W  ++G   LP+ +C
Sbjct:   281 DPKERIWRELKGVESLPKFLC 301

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2077299 AT3G63220 "AT3G63220" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 7.9e-16, P = 7.9e-16
 Identities = 84/288 (29%), Positives = 126/288 (43%)

Query:    53 IPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAF 112
             + G+P+ VAL CL  +P+  H     V + W   + + E  F  RKEL   +  L V AF
Sbjct:    12 LDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHE-LFRVRKELRSSEHLLCVCAF 70

Query:   113 HKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCP 172
                  +  WQV       W T+P +P + +   H F  V+    G LFV GG  SD   P
Sbjct:    71 DP---ENIWQVYSPNCDRWLTLPLLPSRIRHLAH-FGAVTTA--GMLFVLGGG-SDAVSP 123

Query:   173 L----------DLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELD 222
             +          D V  Y+  + +WT    M+  R+ FA  V+ G I VAGG +     + 
Sbjct:   124 VTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSIS 183

Query:   223 SAEVLDPVKGNWRTIASMG-TNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN 281
              AE+ DP    W +I  +  T+ ++    V++GK+ V    L         QV +     
Sbjct:   184 GAEMYDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTV------QVLESVKLG 237

Query:   282 WESMAVGLREGWT-GSSVVVYEHLFVVSELERMKLKVYDPSTDSWETI 328
             W+    G    W  G  VVV + L+V+S      L V+    D+W+ +
Sbjct:   238 WDVKDYG----WPQGPMVVVEDVLYVMSH----GL-VFKQEGDTWKMV 276

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009062 "fatty acid catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C6Z0	FBK17_ARATH	No assigned EC number	0.7394	0.9875	0.9974	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028309001 SubName- Full=Putative uncharacterized protein (Chromosome chr10 scaffold_43, whole genome shotgun sequence); (405 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	402
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	1e-09
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	4e-09
pfam01344	46	pfam01344, Kelch_1, Kelch motif	7e-08
pfam00646	48	pfam00646, F-box, F-box domain	7e-06
smart00612	47	smart00612, Kelch, Kelch domain	7e-06
pfam13964	50	pfam13964, Kelch_6, Kelch motif	2e-05
smart00612	47	smart00612, Kelch, Kelch domain	8e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	8e-05
pfam12937	47	pfam12937, F-box-like, F-box-like	0.001

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 34/218 (15%)

Query: 131 WHTIPAM--PCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV 188
           W+ +P +  P K+                 ++V GG+       L+ V  ++  +++W  
Sbjct: 323 WNKVPELIYPRKN--------PGVTVFNNRIYVIGGI--YNSISLNTVESWKPGESKWRE 372

Query: 189 MNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYD 248
              +I  R       +  +IYV GG S +   L + E        W   + +  +     
Sbjct: 373 EPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGC 432

Query: 249 AAVLDGKLLVTEGWLWPFFVSPRGQV--YDPSTDNW--ESMAVGLREGWTGSSVVVYEHL 304
           A   DGK+ V  G  +   +     V  Y+P T+ W   S    L      +S+ ++ + 
Sbjct: 433 AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS---LNFPRINASLCIFNNK 489

Query: 305 FVV----------SELERMKLKVYDPSTDSWETIEGPP 332
             V          +E+E     VYD  T++W      P
Sbjct: 490 IYVVGGDKYEYYINEIE-----VYDDKTNTWTLFCKFP 522

Length = 534

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 22/208 (10%)

Query: 159 LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADL 218
           ++  GGM  +       V+ Y+ +   W  + ++I  R      V    IYV GG     
Sbjct: 297 IYFIGGMNKNNLSVNS-VVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNS- 354

Query: 219 FELDSAEVLDPVKGNWRTIASMGTNMASYDA--AVLDGKLLVTEGWLWPFFVSPRGQVYD 276
             L++ E   P +  WR    +      Y+     ++  + V  G      +    + + 
Sbjct: 355 ISLNTVESWKPGESKWREEPPL--IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS 412

Query: 277 PSTDNWESMAVGLREGWTGSSVVVYE----------HLFVVSELERMKLKVYDPSTDSWE 326
            +T+ W S    L     G   + ++          ++  +     ++   Y+P T+ W 
Sbjct: 413 LNTNKW-SKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVES--YNPVTNKW- 468

Query: 327 TIEGPPLPEQICKPFAVNACDCRVYVVG 354
             E   L         +   + ++YVVG
Sbjct: 469 -TELSSLNFPRINAS-LCIFNNKIYVVG 494

Length = 534

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 195 ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG 241
            RS     V+GG IYV GG       L S EV DP    W  + SM 
Sbjct: 1   PRSGAGVVVLGGKIYVIGGYD-GGQSLSSVEVYDPETNTWSKLPSMP 46

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 42.6 bits (101), Expect = 7e-06
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 51 PFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTR 96
            +  LPDD+ L  L RL  +       V KRW  L+ + + +  R
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKR 46

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 42.5 bits (101), Expect = 7e-06
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 208 IYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDG 254
           IYV GG       L S EV DP    W  + SM T  + +  AV++G
Sbjct: 2   IYVVGGFDGGQR-LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47

Length = 47

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 195 ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM 240
            R+  ++  +GG IYV GG S      +   V DP  G+W  +  +
Sbjct: 1   PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPL 46

Length = 50

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 159 LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGG 206
           ++V GG        L  V  Y+ + N+WT +  M T RS     VI G
Sbjct: 2   IYVVGGFDGGQ--RLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47

Length = 47

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 39.3 bits (93), Expect = 8e-05
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 56 LPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTR 96
          LPD++    L +L  +     R V ++W  L+ + + +F  
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 53 IPGLPDDVALNCLLRLPVESHAACRAVCKRWHLL 86
          +  LPD++ L     L          VC+RW  L
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWREL 34

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	402
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PLN02153	341	epithiospecifier protein	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PLN02193	470	nitrile-specifier protein	100.0
PLN02193	470	nitrile-specifier protein	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.98
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.95
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.93
KOG1230	521	consensus Protein containing repeated kelch motifs	99.92
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.91
KOG1230	521	consensus Protein containing repeated kelch motifs	99.9
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.9
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.79
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.52
PF13964	50	Kelch_6: Kelch motif	99.26
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.15
PF13964	50	Kelch_6: Kelch motif	99.12
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.04
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.02
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	98.94
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.93
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.85
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.82
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.81
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.77
smart00612	47	Kelch Kelch domain.	98.75
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.65
smart00612	47	Kelch Kelch domain.	98.63
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.63
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.62
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.58
PLN02772	398	guanylate kinase	98.46
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.4
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.38
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	98.35
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.31
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.3
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.23
PF13854	42	Kelch_5: Kelch motif	98.18
PLN02772	398	guanylate kinase	98.16
PF13854	42	Kelch_5: Kelch motif	98.09
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.05
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.04
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	98.01
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	97.95
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.94
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.87
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.75
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.61
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.56
PF03089	337	RAG2: Recombination activating protein 2; InterPro	97.55
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.5
PF03089	337	RAG2: Recombination activating protein 2; InterPro	97.36
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.35
PF12768	281	Rax2: Cortical protein marker for cell polarity	97.16
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	97.04
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.0
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.87
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.76
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	96.74
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.67
KOG2055	514	consensus WD40 repeat protein [General function pr	96.62
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.48
KOG2055	514	consensus WD40 repeat protein [General function pr	96.47
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.44
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	96.27
PRK11028	330	6-phosphogluconolactonase; Provisional	96.15
PRK04792	448	tolB translocation protein TolB; Provisional	96.11
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.99
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.92
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.82
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.8
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.74
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.66
PRK00178	430	tolB translocation protein TolB; Provisional	95.53
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.41
KOG0310	487	consensus Conserved WD40 repeat-containing protein	95.33
PRK04792	448	tolB translocation protein TolB; Provisional	95.29
PRK05137	435	tolB translocation protein TolB; Provisional	95.18
KOG0310	487	consensus Conserved WD40 repeat-containing protein	95.13
PRK03629	429	tolB translocation protein TolB; Provisional	95.13
PRK04922	433	tolB translocation protein TolB; Provisional	95.01
PRK00178	430	tolB translocation protein TolB; Provisional	94.84
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.79
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	94.79
KOG0316	307	consensus Conserved WD40 repeat-containing protein	94.69
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	94.63
PRK11028	330	6-phosphogluconolactonase; Provisional	94.6
PRK13684	334	Ycf48-like protein; Provisional	94.58
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	94.57
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	94.53
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.51
PRK05137	435	tolB translocation protein TolB; Provisional	94.38
PRK04043	419	tolB translocation protein TolB; Provisional	94.36
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	94.29
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	94.29
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	94.25
PRK04922	433	tolB translocation protein TolB; Provisional	94.17
KOG0289	506	consensus mRNA splicing factor [General function p	94.05
PLN00181	793	protein SPA1-RELATED; Provisional	94.03
PTZ00421	493	coronin; Provisional	93.89
PRK04043	419	tolB translocation protein TolB; Provisional	93.78
PTZ00421	493	coronin; Provisional	93.7
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.3
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	93.28
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.06
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.05
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	92.82
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.55
PRK13684	334	Ycf48-like protein; Provisional	92.43
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.27
PTZ00420	568	coronin; Provisional	92.18
smart00284	255	OLF Olfactomedin-like domains.	91.97
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	91.72
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.44
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.31
smart00284	255	OLF Olfactomedin-like domains.	91.19
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.99
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	90.95
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	90.82
PRK01742	429	tolB translocation protein TolB; Provisional	90.63
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	89.93
PRK03629	429	tolB translocation protein TolB; Provisional	89.86
COG4946	668	Uncharacterized protein related to the periplasmic	89.55
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	89.55
KOG0266	456	consensus WD40 repeat-containing protein [General	89.45
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	89.17
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	89.07
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	89.01
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.99
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	88.97
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	88.2
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	88.11
KOG0649	325	consensus WD40 repeat protein [General function pr	87.69
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	87.53
PLN00181	793	protein SPA1-RELATED; Provisional	87.37
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	87.34
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	86.92
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	86.78
PRK02889	427	tolB translocation protein TolB; Provisional	86.63
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	86.52
KOG0266	456	consensus WD40 repeat-containing protein [General	86.21
COG4946	668	Uncharacterized protein related to the periplasmic	86.16
KOG0649	325	consensus WD40 repeat protein [General function pr	86.08
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	85.9
KOG0286	343	consensus G-protein beta subunit [General function	85.14
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	85.07
KOG0286	343	consensus G-protein beta subunit [General function	84.28
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	83.57
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	83.55
PRK02889	427	tolB translocation protein TolB; Provisional	83.05
COG1520	370	FOG: WD40-like repeat [Function unknown]	82.76
KOG0296	399	consensus Angio-associated migratory cell protein	81.8
KOG2111	346	consensus Uncharacterized conserved protein, conta	81.8
KOG2321	703	consensus WD40 repeat protein [General function pr	81.79
KOG0278	334	consensus Serine/threonine kinase receptor-associa	81.09
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	80.92
PLN00033	398	photosystem II stability/assembly factor; Provisio	80.89
KOG0315	311	consensus G-protein beta subunit-like protein (con	80.74

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=1.1e-44  Score=350.11  Aligned_cols=320  Identities=24%  Similarity=0.373  Sum_probs=257.5

Q ss_pred             CCCCCcHHHHHHhhccCcc--c--hhhhhhhccHhHHHhhcCchHhHHHHhhcC-CCCCeEEEEEEeCC--CCceeEEEe
Q 040145           52 FIPGLPDDVALNCLLRLPV--E--SHAACRAVCKRWHLLLGNKERFFTRRKELG-FKDPWLFVFAFHKC--TGKIQWQVL  124 (402)
Q Consensus        52 ~~~~Lp~dl~~~il~rlp~--~--~l~~~~~v~k~W~~l~~s~~~~~~~r~~~~-~~~~~l~~~gg~~~--~~~~~~~~~  124 (402)
                      .++-||...+.+++...+.  .  ....+-...++|+.+..........|.... ...+.||++||...  .....+..|
T Consensus       227 r~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~y  306 (571)
T KOG4441|consen  227 RLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECY  306 (571)
T ss_pred             CccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEe
Confidence            3356666666665554431  1  111111223345555442201222233322 45688999998764  556778999


Q ss_pred             ecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE
Q 040145          125 DLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI  204 (402)
Q Consensus       125 d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~  204 (402)
                      ||.++.|..+++|+.++    ..++++++  ++.||++||.+. +...++++++|||.+++|+.+++|..+|..++++++
T Consensus       307 d~~~~~w~~~a~m~~~r----~~~~~~~~--~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l  379 (571)
T KOG4441|consen  307 DPKTNEWSSLAPMPSPR----CRVGVAVL--NGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL  379 (571)
T ss_pred             cCCcCcEeecCCCCccc----ccccEEEE--CCEEEEEccccC-CCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence            99999999999999665    56777777  999999999974 446789999999999999999999999999999999


Q ss_pred             CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeee
Q 040145          205 GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES  284 (402)
Q Consensus       205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~  284 (402)
                      +|+||++||.++... ++++|+|||.++.|+.+++|+..|.++++++++|+||++||..+....++++++|||.+++|+.
T Consensus       380 ~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~  458 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL  458 (571)
T ss_pred             CCEEEEEeccccccc-cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence            999999999997766 8999999999999999999999999999999999999999998776678899999999999999


Q ss_pred             ccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCc-e
Q 040145          285 MAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNL-H  358 (402)
Q Consensus       285 ~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~-~  358 (402)
                      +++ |+.+|.+++ ++++++||++||.+    ...+++|||.+++|+.+..++.+   |..+++++.+++||++||.+ +
T Consensus       459 ~~~-M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~---rs~~g~~~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  459 IAP-MNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP---RSAVGVVVLGGKLYAVGGFDGN  534 (571)
T ss_pred             cCC-cccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc---cccccEEEECCEEEEEecccCc
Confidence            998 777776666 78999999999987    35699999999999999855544   77889999999999999976 5


Q ss_pred             eeeEEEEecccccccCceeeeEEEEeCCCCC
Q 040145          359 VAVGHITRLSTSEKKWSFSVQWQVVDAPDNF  389 (402)
Q Consensus       359 ~~~~~v~~~~~~~~~~~~~~~W~~~~~~~~~  389 (402)
                      ...+.|.+|||..+      +|.....|...
T Consensus       535 ~~l~~ve~ydp~~d------~W~~~~~~~~~  559 (571)
T KOG4441|consen  535 NNLNTVECYDPETD------TWTEVTEPESG  559 (571)
T ss_pred             cccceeEEcCCCCC------ceeeCCCcccc
Confidence            56799999999888      88887773333

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-41  Score=328.58  Aligned_cols=263  Identities=17%  Similarity=0.278  Sum_probs=214.6

Q ss_pred             CeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC
Q 040145          105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN  184 (402)
Q Consensus       105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~  184 (402)
                      ..+++.+|........+.+||+.+++|..+++||.++    ..++++++  ++.||++||.... ....+++++|||.++
T Consensus       258 ~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r----~~~~~a~l--~~~IYviGG~~~~-~~~~~~v~~Yd~~~n  330 (557)
T PHA02713        258 LCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHI----INYASAIV--DNEIIIAGGYNFN-NPSLNKVYKINIENK  330 (557)
T ss_pred             eEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccc----cceEEEEE--CCEEEEEcCCCCC-CCccceEEEEECCCC
Confidence            3455544421112235789999999999999998554    55666666  9999999997422 235789999999999


Q ss_pred             ceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccc
Q 040145          185 RWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLW  264 (402)
Q Consensus       185 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~  264 (402)
                      +|..+++|+.+|..+++++++++||++||.++... .+++++|||.+++|+.+++||.+|..+++++++|+||++||..+
T Consensus       331 ~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~-~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~  409 (557)
T PHA02713        331 IHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNV-ERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTE  409 (557)
T ss_pred             eEeeCCCCcchhhceeEEEECCEEEEECCcCCCCC-CceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCc
Confidence            99999999999999999999999999999865544 78899999999999999999999999999999999999999753


Q ss_pred             CC-----------------ccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC-----CcEEEEEeCC
Q 040145          265 PF-----------------FVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE-----RMKLKVYDPS  321 (402)
Q Consensus       265 ~~-----------------~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~-----~~~~~~yd~~  321 (402)
                      ..                 ...+.+++|||.+++|+.+++ ++.++..++ ++++|+||++||.+     ...+++|||.
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~  488 (557)
T PHA02713        410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN  488 (557)
T ss_pred             ccccccccccccccccccccccceEEEECCCCCeEeecCC-CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCC
Confidence            21                 124679999999999999987 666555554 78999999999974     2358999999


Q ss_pred             C-CceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeCCC
Q 040145          322 T-DSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPD  387 (402)
Q Consensus       322 ~-~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~~~  387 (402)
                      + ++|+.++.  +|.. |..+++++.+|+||++||.+..  ..+++||+.++      +|..+.+-+
T Consensus       489 ~~~~W~~~~~--m~~~-r~~~~~~~~~~~iyv~Gg~~~~--~~~e~yd~~~~------~W~~~~~~~  544 (557)
T PHA02713        489 TYNGWELITT--TESR-LSALHTILHDNTIMMLHCYESY--MLQDTFNVYTY------EWNHICHQH  544 (557)
T ss_pred             CCCCeeEccc--cCcc-cccceeEEECCEEEEEeeecce--eehhhcCcccc------cccchhhhc
Confidence            9 89999994  5433 7788999999999999997653  47999999888      777766644

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=9e-39  Score=309.11  Aligned_cols=261  Identities=26%  Similarity=0.416  Sum_probs=220.9

Q ss_pred             cchhhhhhhccHhHHHhhcCchHhHHHHhhcCCCCCeEEEEEEeCC--CCceeEEEeecCCCcEEeCCCCCCCCCCCCCC
Q 040145           70 VESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKC--TGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHG  147 (402)
Q Consensus        70 ~~~l~~~~~v~k~W~~l~~s~~~~~~~r~~~~~~~~~l~~~gg~~~--~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~  147 (402)
                      ......+....+.|..+...| . ...+...+..++.||++||.+.  .....+++|||.+++|..+++|..++    ..
T Consensus       300 ~~~ve~yd~~~~~w~~~a~m~-~-~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R----~~  373 (571)
T KOG4441|consen  300 LRSVECYDPKTNEWSSLAPMP-S-PRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR----SD  373 (571)
T ss_pred             cceeEEecCCcCcEeecCCCC-c-ccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc----cc
Confidence            345555667777899988766 1 1223345567999999999873  45678999999999999999999666    88


Q ss_pred             ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEE
Q 040145          148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      ++.+++  +|.||++||.+  +....+++++|||.+++|+..++|+.+|..+++++++++||++||.++....++++++|
T Consensus       374 ~~v~~l--~g~iYavGG~d--g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~Y  449 (571)
T KOG4441|consen  374 FGVAVL--DGKLYAVGGFD--GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECY  449 (571)
T ss_pred             ceeEEE--CCEEEEEeccc--cccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEE
Confidence            888888  99999999996  44688899999999999999999999999999999999999999998877559999999


Q ss_pred             cCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEE
Q 040145          228 DPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFV  306 (402)
Q Consensus       228 d~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~  306 (402)
                      ||.|++|+.+++|+.+|.++++++++++||++||.++ ......+++||+.+++|+.+++ +..++.+.. ++.++++|+
T Consensus       450 DP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~-m~~~rs~~g~~~~~~~ly~  527 (571)
T KOG4441|consen  450 DPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAP-MTSPRSAVGVVVLGGKLYA  527 (571)
T ss_pred             cCCCCceeecCCcccccccceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEccc-CccccccccEEEECCEEEE
Confidence            9999999999999999999999999999999999987 4445679999999999999976 666666555 789999999


Q ss_pred             EeccC----CcEEEEEeCCCCceeecCCCCCCccccCCeEEEE
Q 040145          307 VSELE----RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA  345 (402)
Q Consensus       307 ~gg~~----~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~  345 (402)
                      +||.+    .+.+..|||++++|+...  + +...+..+++++
T Consensus       528 vGG~~~~~~l~~ve~ydp~~d~W~~~~--~-~~~~~~~~~~~~  567 (571)
T KOG4441|consen  528 VGGFDGNNNLNTVECYDPETDTWTEVT--E-PESGRGGAGVAV  567 (571)
T ss_pred             EecccCccccceeEEcCCCCCceeeCC--C-ccccccCcceEE
Confidence            99987    468999999999999998  4 433355544444

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=4.2e-37  Score=284.20  Aligned_cols=284  Identities=19%  Similarity=0.268  Sum_probs=209.2

Q ss_pred             hHHHhhcCchHhHHHHhh--cCCCCCeEEEEEEeCCC---CceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccC
Q 040145           82 RWHLLLGNKERFFTRRKE--LGFKDPWLFVFAFHKCT---GKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPRE  156 (402)
Q Consensus        82 ~W~~l~~s~~~~~~~r~~--~~~~~~~l~~~gg~~~~---~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~  156 (402)
                      .|..+....+..+..|..  +...++.||++||....   ...++++||+.+++|..+++++..++.....++++++  +
T Consensus         8 ~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~   85 (341)
T PLN02153          8 GWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--G   85 (341)
T ss_pred             eEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--C
Confidence            366665522122334443  34458899999986421   2347999999999999988775332211224555665  9


Q ss_pred             CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC-----cccccceEEEEECCEEEEEcCCCCCC-----CCCCeeEE
Q 040145          157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM-----ITARSFFASGVIGGMIYVAGGSSADL-----FELDSAEV  226 (402)
Q Consensus       157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~  226 (402)
                      ++||++||....  ...+++++||+.+++|+.++++     |.+|..|++++++++|||+||.+...     ...+++++
T Consensus        86 ~~iyv~GG~~~~--~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         86 TKLYIFGGRDEK--REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CEEEEECCCCCC--CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence            999999998543  3567999999999999999877     78899999999999999999985432     12468999


Q ss_pred             EcCCCCcEEEcCCCC---CCCcceeEEEECCEEEEEcccccC-------CccCCcEEEEeCCCCCeeeccc--cccCCCc
Q 040145          227 LDPVKGNWRTIASMG---TNMASYDAAVLDGKLLVTEGWLWP-------FFVSPRGQVYDPSTDNWESMAV--GLREGWT  294 (402)
Q Consensus       227 yd~~t~~W~~~~~~~---~~~~~~~~~~~~g~ly~~gG~~~~-------~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~  294 (402)
                      ||+++++|+.++.+.   .+|..+++++++++||++||....       ....+.+++||+.+++|++++.  .+|.++.
T Consensus       164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~  243 (341)
T PLN02153        164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS  243 (341)
T ss_pred             EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence            999999999997654   678889899999999999986421       1224689999999999999874  2455555


Q ss_pred             eeE-EEECCEEEEEeccC-------------CcEEEEEeCCCCceeecCCC---CCCccccCCeEEEEe-CCEEEEEecC
Q 040145          295 GSS-VVVYEHLFVVSELE-------------RMKLKVYDPSTDSWETIEGP---PLPEQICKPFAVNAC-DCRVYVVGRN  356 (402)
Q Consensus       295 ~~~-~~~~~~l~~~gg~~-------------~~~~~~yd~~~~~W~~~~~~---~~p~~~~~~~~~~~~-~~~i~v~GG~  356 (402)
                      .++ ++++++||++||..             .+++++||+++++|+.+...   ++|+.....+++.+. +++|||+||.
T Consensus       244 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~  323 (341)
T PLN02153        244 VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGK  323 (341)
T ss_pred             eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCc
Confidence            554 78899999999962             24899999999999998642   455432222334444 4589999997


Q ss_pred             ce--eeeEEEEeccc
Q 040145          357 LH--VAVGHITRLST  369 (402)
Q Consensus       357 ~~--~~~~~v~~~~~  369 (402)
                      ..  ....|++.|+.
T Consensus       324 ~~~~~~~~~~~~~~~  338 (341)
T PLN02153        324 LPTNERTDDLYFYAV  338 (341)
T ss_pred             CCCCccccceEEEec
Confidence            54  46688888863

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=6.5e-37  Score=300.15  Aligned_cols=256  Identities=16%  Similarity=0.259  Sum_probs=211.5

Q ss_pred             eeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc
Q 040145          119 IQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF  198 (402)
Q Consensus       119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  198 (402)
                      .....|++..++|..+++.+.     ...++++++  ++.||++||..... ...+++++||+.+++|+.+++|+.+|..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~lyv~GG~~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~R~~  335 (534)
T PHA03098        264 YNYITNYSPLSEINTIIDIHY-----VYCFGSVVL--NNVIYFIGGMNKNN-LSVNSVVSYDTKTKSWNKVPELIYPRKN  335 (534)
T ss_pred             ceeeecchhhhhcccccCccc-----cccceEEEE--CCEEEEECCCcCCC-CeeccEEEEeCCCCeeeECCCCCccccc
Confidence            345678888899998876552     133566666  99999999985432 3567899999999999999999999999


Q ss_pred             eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCC
Q 040145          199 FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPS  278 (402)
Q Consensus       199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~  278 (402)
                      ++++.++++||++||.+.... .+++++||+.+++|+.++++|.+|..+++++++++||++||........+.+++||+.
T Consensus       336 ~~~~~~~~~lyv~GG~~~~~~-~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~  414 (534)
T PHA03098        336 PGVTVFNNRIYVIGGIYNSIS-LNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLN  414 (534)
T ss_pred             ceEEEECCEEEEEeCCCCCEe-cceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCC
Confidence            999999999999999875444 7889999999999999999999999999999999999999975444446789999999


Q ss_pred             CCCeeeccccccCCCceeE-EEECCEEEEEeccC-------CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEE
Q 040145          279 TDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE-------RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRV  350 (402)
Q Consensus       279 ~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~-------~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i  350 (402)
                      +++|+.+++ +|.++.+++ ++.+++||++||.+       .+.+++||+.+++|+.++.++.|   +..++++..+++|
T Consensus       415 t~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---r~~~~~~~~~~~i  490 (534)
T PHA03098        415 TNKWSKGSP-LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP---RINASLCIFNNKI  490 (534)
T ss_pred             CCeeeecCC-CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc---cccceEEEECCEE
Confidence            999999986 555555554 78899999999964       23599999999999999855444   6667888889999


Q ss_pred             EEEecCceee-eEEEEecccccccCceeeeEEEEeCCCCCCCcc
Q 040145          351 YVVGRNLHVA-VGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLT  393 (402)
Q Consensus       351 ~v~GG~~~~~-~~~v~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  393 (402)
                      ||+||..... .++++.||+..+      .|+.++.++++.+..
T Consensus       491 yv~GG~~~~~~~~~v~~yd~~~~------~W~~~~~~p~~~~~~  528 (534)
T PHA03098        491 YVVGGDKYEYYINEIEVYDDKTN------TWTLFCKFPKVIGSL  528 (534)
T ss_pred             EEEcCCcCCcccceeEEEeCCCC------EEEecCCCcccccce
Confidence            9999976443 678999999777      899998877766543

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=9.2e-36  Score=275.28  Aligned_cols=249  Identities=15%  Similarity=0.207  Sum_probs=192.3

Q ss_pred             cCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc-ccc---cceEE
Q 040145          126 LTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI-TAR---SFFAS  201 (402)
Q Consensus       126 ~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~-~~r---~~~~~  201 (402)
                      +...+|.++.......+..+..++++++  +++||++||.........+++++||+.+++|+.+++++ .+|   ..+++
T Consensus         4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~   81 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGPRCSHGIAVV--GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRM   81 (341)
T ss_pred             ccCCeEEEecCCCCCCCCCCCcceEEEE--CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEE
Confidence            3567799987732211123366777776  99999999985433334679999999999999988764 344   36788


Q ss_pred             EEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCC-----CCCCcceeEEEECCEEEEEcccccCC-----ccCCc
Q 040145          202 GVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM-----GTNMASYDAAVLDGKLLVTEGWLWPF-----FVSPR  271 (402)
Q Consensus       202 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~~~~~~~~~~~g~ly~~gG~~~~~-----~~~~~  271 (402)
                      ++++++||++||.+.... .+++++||+.+++|+.++++     |.+|..+++++++++||++||.....     ...+.
T Consensus        82 ~~~~~~iyv~GG~~~~~~-~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  160 (341)
T PLN02153         82 VAVGTKLYIFGGRDEKRE-FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT  160 (341)
T ss_pred             EEECCEEEEECCCCCCCc-cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence            999999999999876554 78899999999999999877     78899999999999999999976321     12457


Q ss_pred             EEEEeCCCCCeeecccc--ccCCCceeE-EEECCEEEEEeccC------------CcEEEEEeCCCCceeecCCCC-CCc
Q 040145          272 GQVYDPSTDNWESMAVG--LREGWTGSS-VVVYEHLFVVSELE------------RMKLKVYDPSTDSWETIEGPP-LPE  335 (402)
Q Consensus       272 ~~~yd~~~~~W~~~~~~--~~~~~~~~~-~~~~~~l~~~gg~~------------~~~~~~yd~~~~~W~~~~~~~-~p~  335 (402)
                      +++||+++++|+.++..  .+.++.+++ ++++++||++||..            .+.+++||+.+++|++++... +|.
T Consensus       161 v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~  240 (341)
T PLN02153        161 IEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS  240 (341)
T ss_pred             EEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Confidence            99999999999998752  224454444 68899999998853            357999999999999987432 332


Q ss_pred             cccCCeEEEEeCCEEEEEecCc----------eeeeEEEEecccccccCceeeeEEEEe
Q 040145          336 QICKPFAVNACDCRVYVVGRNL----------HVAVGHITRLSTSEKKWSFSVQWQVVD  384 (402)
Q Consensus       336 ~~~~~~~~~~~~~~i~v~GG~~----------~~~~~~v~~~~~~~~~~~~~~~W~~~~  384 (402)
                       .|..+++++.+++|||+||..          ....++++.||+..+      .|+++.
T Consensus       241 -~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~------~W~~~~  292 (341)
T PLN02153        241 -ARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL------VWEKLG  292 (341)
T ss_pred             -CcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc------EEEecc
Confidence             377788999999999999963          123468999999777      888774

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=4.8e-37  Score=298.52  Aligned_cols=245  Identities=14%  Similarity=0.193  Sum_probs=201.8

Q ss_pred             hhhhhccHhHHHhhcCchHhHHHHhhcCCCCCeEEEEEEeC--CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEE
Q 040145           74 AACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHK--CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCV  151 (402)
Q Consensus        74 ~~~~~v~k~W~~l~~s~~~~~~~r~~~~~~~~~l~~~gg~~--~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~  151 (402)
                      .++....++|..+...| . .......+..++.||++||..  ......+++|||.+++|..+++|+.++    ..++++
T Consensus       275 ~~yd~~~~~W~~l~~mp-~-~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R----~~~~~~  348 (557)
T PHA02713        275 LVYNINTMEYSVISTIP-N-HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR----CRFSLA  348 (557)
T ss_pred             EEEeCCCCeEEECCCCC-c-cccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh----hceeEE
Confidence            34556677899887666 2 122233455689999999863  233567899999999999999999655    667777


Q ss_pred             EEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCC-------------
Q 040145          152 SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADL-------------  218 (402)
Q Consensus       152 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-------------  218 (402)
                      ++  +++||++||.++.  ...+++++|||.+++|+.+++||.+|..+++++++++||++||.++..             
T Consensus       349 ~~--~g~IYviGG~~~~--~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~  424 (557)
T PHA02713        349 VI--DDTIYAIGGQNGT--NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDM  424 (557)
T ss_pred             EE--CCEEEEECCcCCC--CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccc
Confidence            77  9999999998533  356789999999999999999999999999999999999999985421             


Q ss_pred             ----CCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCC-CCeeeccccccCCC
Q 040145          219 ----FELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST-DNWESMAVGLREGW  293 (402)
Q Consensus       219 ----~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~  293 (402)
                          ...+++++|||.+++|+.+++|+.+|..+++++++|+||++||..+.....+.+++|||.+ ++|+.+++ ++.++
T Consensus       425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~-m~~~r  503 (557)
T PHA02713        425 EEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT-TESRL  503 (557)
T ss_pred             cccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc-cCccc
Confidence                1257899999999999999999999999999999999999999864433334689999999 89999987 77776


Q ss_pred             ceeE-EEECCEEEEEeccCC-cEEEEEeCCCCceeecC
Q 040145          294 TGSS-VVVYEHLFVVSELER-MKLKVYDPSTDSWETIE  329 (402)
Q Consensus       294 ~~~~-~~~~~~l~~~gg~~~-~~~~~yd~~~~~W~~~~  329 (402)
                      .... ++++|+||++||.++ ..+++||+.+++|+.+.
T Consensus       504 ~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~  541 (557)
T PHA02713        504 SALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHIC  541 (557)
T ss_pred             ccceeEEECCEEEEEeeecceeehhhcCcccccccchh
Confidence            6665 789999999999763 47999999999999887

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=1.9e-35  Score=271.32  Aligned_cols=248  Identities=15%  Similarity=0.201  Sum_probs=194.9

Q ss_pred             CCCCCeEEEEEEeCCCC-----------ceeEEEee-cCCC-cEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccC
Q 040145          101 GFKDPWLFVFAFHKCTG-----------KIQWQVLD-LTHY-CWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVS  167 (402)
Q Consensus       101 ~~~~~~l~~~gg~~~~~-----------~~~~~~~d-~~~~-~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~  167 (402)
                      +..++.||++||.+...           ..++++|+ +..+ +|..+++||.++    ..++++++  ++.||++||.+.
T Consensus        10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r----~~~~~~~~--~~~lyviGG~~~   83 (323)
T TIGR03548        10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEA----AYGASVSV--ENGIYYIGGSNS   83 (323)
T ss_pred             eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccc----cceEEEEE--CCEEEEEcCCCC
Confidence            44688999999864321           13567775 4323 799999888554    45556665  999999999854


Q ss_pred             CCCCCCceEEEEECCCCce----eecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCC-
Q 040145          168 DVDCPLDLVLKYEMQKNRW----TVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGT-  242 (402)
Q Consensus       168 ~~~~~~~~~~~~d~~t~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-  242 (402)
                      .  ...+++++||+.+++|    +.+++||.+|..+++++++++||++||...... .+++++||+.+++|+.++++|. 
T Consensus        84 ~--~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~-~~~v~~yd~~~~~W~~~~~~p~~  160 (323)
T TIGR03548        84 S--ERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKP-SNKSYLFNLETQEWFELPDFPGE  160 (323)
T ss_pred             C--CCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCcc-CceEEEEcCCCCCeeECCCCCCC
Confidence            3  3578999999999988    778999999999999999999999999854444 7899999999999999998884 


Q ss_pred             CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecccc----ccCCCcee-E-EEECCEEEEEeccCC----
Q 040145          243 NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG----LREGWTGS-S-VVVYEHLFVVSELER----  312 (402)
Q Consensus       243 ~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~----~~~~~~~~-~-~~~~~~l~~~gg~~~----  312 (402)
                      +|..+.+++++++||++||..+..  ..++++||+++++|+.+++.    .|..+... + +..+++||++||.+.    
T Consensus       161 ~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~  238 (323)
T TIGR03548       161 PRVQPVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYN  238 (323)
T ss_pred             CCCcceEEEECCEEEEEcCCCCcc--ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHH
Confidence            788888889999999999975432  24689999999999998752    22222222 2 345799999999751    


Q ss_pred             --------------------------------cEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceee
Q 040145          313 --------------------------------MKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVA  360 (402)
Q Consensus       313 --------------------------------~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~  360 (402)
                                                      +.+++||+.+++|+.++  ++|...|..++++..+++||++||..+..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~~r~~~~~~~~~~~iyv~GG~~~pg  316 (323)
T TIGR03548       239 DAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG--NSPFFARCGAALLLTGNNIFSINGELKPG  316 (323)
T ss_pred             HHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc--cccccccCchheEEECCEEEEEeccccCC
Confidence                                            47999999999999998  45544478888999999999999976654


Q ss_pred             e
Q 040145          361 V  361 (402)
Q Consensus       361 ~  361 (402)
                      .
T Consensus       317 ~  317 (323)
T TIGR03548       317 V  317 (323)
T ss_pred             c
Confidence            4

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=8.6e-35  Score=278.33  Aligned_cols=271  Identities=15%  Similarity=0.167  Sum_probs=208.3

Q ss_pred             CCCeEEEEEEeCCCCcee--EEEeecCC----CcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceE
Q 040145          103 KDPWLFVFAFHKCTGKIQ--WQVLDLTH----YCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLV  176 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~--~~~~d~~~----~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~  176 (402)
                      .++.|+.|.|........  ++.+++.+    ++|..+.++... +..|..++++++  ++.||++||.........+++
T Consensus       119 ~~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~-P~pR~~h~~~~~--~~~iyv~GG~~~~~~~~~~~v  195 (470)
T PLN02193        119 QGGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEG-PGLRCSHGIAQV--GNKIYSFGGEFTPNQPIDKHL  195 (470)
T ss_pred             cCCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCC-CCCccccEEEEE--CCEEEEECCcCCCCCCeeCcE
Confidence            467788887765444444  34557655    789998864311 124477777777  999999999854332345689


Q ss_pred             EEEECCCCceeecCCC---cc-cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCC---CCCCcceeE
Q 040145          177 LKYEMQKNRWTVMNKM---IT-ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM---GTNMASYDA  249 (402)
Q Consensus       177 ~~~d~~t~~W~~~~~~---~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~~~~~~~  249 (402)
                      ++||+.+++|+.++.+   |. .|..+++++++++||++||.+.... .+++++||+.+++|+.++++   |.+|..|++
T Consensus       196 ~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~-~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~  274 (470)
T PLN02193        196 YVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQ-YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSM  274 (470)
T ss_pred             EEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCC-CccEEEEECCCCEEEEcCcCCCCCCCccceEE
Confidence            9999999999987643   33 3567888999999999999876544 78999999999999999877   789999999


Q ss_pred             EEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecccc--ccCCCceeE-EEECCEEEEEeccC---CcEEEEEeCCCC
Q 040145          250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG--LREGWTGSS-VVVYEHLFVVSELE---RMKLKVYDPSTD  323 (402)
Q Consensus       250 ~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~-~~~~~~l~~~gg~~---~~~~~~yd~~~~  323 (402)
                      ++++++||++||..... ..+.+++||+.+++|+.++.+  ++..+.++. ++++++||++||.+   .+++++||++++
T Consensus       275 ~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~  353 (470)
T PLN02193        275 AADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQD  353 (470)
T ss_pred             EEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCC
Confidence            99999999999986532 356899999999999998752  334454444 67899999999965   368999999999


Q ss_pred             ceeecCCCCCCccccCCeEEEEeCCEEEEEecCce----------eeeEEEEecccccccCceeeeEEEEe
Q 040145          324 SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLH----------VAVGHITRLSTSEKKWSFSVQWQVVD  384 (402)
Q Consensus       324 ~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~----------~~~~~v~~~~~~~~~~~~~~~W~~~~  384 (402)
                      +|+++..+..++..|..++++.++++|||+||...          ...++++.||+..+      +|+++.
T Consensus       354 ~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~------~W~~~~  418 (470)
T PLN02193        354 KWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL------QWERLD  418 (470)
T ss_pred             EEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC------EEEEcc
Confidence            99999754222233778888999999999999642          23468999999777      788765

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=3.8e-35  Score=280.78  Aligned_cols=281  Identities=19%  Similarity=0.194  Sum_probs=212.0

Q ss_pred             HhHHHhhcCchHhHHHHhhc--CCCCCeEEEEEEeCC--C-CceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc
Q 040145           81 KRWHLLLGNKERFFTRRKEL--GFKDPWLFVFAFHKC--T-GKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR  155 (402)
Q Consensus        81 k~W~~l~~s~~~~~~~r~~~--~~~~~~l~~~gg~~~--~-~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~  155 (402)
                      .+|..+.... +.+..|..+  ...++.||++||...  . ...++++||+.+++|..++.+...++..+..++++++  
T Consensus       151 ~~W~~~~~~~-~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--  227 (470)
T PLN02193        151 GKWIKVEQKG-EGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--  227 (470)
T ss_pred             ceEEEcccCC-CCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--
Confidence            5798776543 344455544  345889999998632  1 2246999999999999877653222111234455555  


Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC---cccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM---ITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKG  232 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~  232 (402)
                      +++||++||....  ...+++++||+.+++|+.++++   |.+|..|++++++++||++||.+.... .+++++||+.++
T Consensus       228 ~~~lYvfGG~~~~--~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~-~~~~~~yd~~t~  304 (470)
T PLN02193        228 GSTLYVFGGRDAS--RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATAR-LKTLDSYNIVDK  304 (470)
T ss_pred             CCEEEEECCCCCC--CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCC-cceEEEEECCCC
Confidence            9999999998543  4678999999999999999887   789999999999999999999876554 788999999999


Q ss_pred             cEEEcCC---CCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc--cccCCCceeE-EEECCEEEE
Q 040145          233 NWRTIAS---MGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGWTGSS-VVVYEHLFV  306 (402)
Q Consensus       233 ~W~~~~~---~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~-~~~~~~l~~  306 (402)
                      +|+.++.   ++.+|..+.+++++++||++||..+.  ..+.+++||+.+++|+.++.  ..|.++..++ ++++++||+
T Consensus       305 ~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv  382 (470)
T PLN02193        305 KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVI  382 (470)
T ss_pred             EEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC--ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEE
Confidence            9999864   66788899999999999999997643  25789999999999999874  2344454444 788999999


Q ss_pred             EeccC-------------CcEEEEEeCCCCceeecCCCC---CCccccCCeE--E-EEeC-CEEEEEecCc--eeeeEEE
Q 040145          307 VSELE-------------RMKLKVYDPSTDSWETIEGPP---LPEQICKPFA--V-NACD-CRVYVVGRNL--HVAVGHI  364 (402)
Q Consensus       307 ~gg~~-------------~~~~~~yd~~~~~W~~~~~~~---~p~~~~~~~~--~-~~~~-~~i~v~GG~~--~~~~~~v  364 (402)
                      +||..             .+++++||+.+++|+.+..++   .++..|..++  + ...+ +.|+++||..  +...+|+
T Consensus       383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~  462 (470)
T PLN02193        383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDL  462 (470)
T ss_pred             ECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccce
Confidence            99963             247999999999999987433   1233344442  2 2333 4599999974  5667999


Q ss_pred             Eeccc
Q 040145          365 TRLST  369 (402)
Q Consensus       365 ~~~~~  369 (402)
                      |.|++
T Consensus       463 ~~~~~  467 (470)
T PLN02193        463 FFYGI  467 (470)
T ss_pred             EEEec
Confidence            99865

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=1.2e-34  Score=268.96  Aligned_cols=255  Identities=20%  Similarity=0.290  Sum_probs=192.8

Q ss_pred             CCCCCeEEEEEEeCCCCceeEEEeec--CCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC----CCCCc
Q 040145          101 GFKDPWLFVFAFHKCTGKIQWQVLDL--THYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV----DCPLD  174 (402)
Q Consensus       101 ~~~~~~l~~~gg~~~~~~~~~~~~d~--~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~----~~~~~  174 (402)
                      +..++.||++||...   ..+++||+  .+++|.++++|+..+   +..++++++  +++||++||.....    ....+
T Consensus        14 ~~~~~~vyv~GG~~~---~~~~~~d~~~~~~~W~~l~~~p~~~---R~~~~~~~~--~~~iYv~GG~~~~~~~~~~~~~~   85 (346)
T TIGR03547        14 AIIGDKVYVGLGSAG---TSWYKLDLKKPSKGWQKIADFPGGP---RNQAVAAAI--DGKLYVFGGIGKANSEGSPQVFD   85 (346)
T ss_pred             EEECCEEEEEccccC---CeeEEEECCCCCCCceECCCCCCCC---cccceEEEE--CCEEEEEeCCCCCCCCCcceecc
Confidence            345899999988632   46889986  578899999998422   255666666  99999999985322    12467


Q ss_pred             eEEEEECCCCceeecC-CCcccccceEEE-EECCEEEEEcCCCCCC---------------------------------C
Q 040145          175 LVLKYEMQKNRWTVMN-KMITARSFFASG-VIGGMIYVAGGSSADL---------------------------------F  219 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~---------------------------------~  219 (402)
                      ++++|||.+++|+.++ ++|.+|..++++ +++++||++||.+...                                 .
T Consensus        86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (346)
T TIGR03547        86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF  165 (346)
T ss_pred             cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence            8999999999999987 456667677666 6899999999985320                                 0


Q ss_pred             CCCeeEEEcCCCCcEEEcCCCCC-CCcceeEEEECCEEEEEcccccCCccCCcEEEEe--CCCCCeeeccccccCCC---
Q 040145          220 ELDSAEVLDPVKGNWRTIASMGT-NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYD--PSTDNWESMAVGLREGW---  293 (402)
Q Consensus       220 ~~~~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd--~~~~~W~~~~~~~~~~~---  293 (402)
                      ..+.+++||+.+++|+.+++||. +|..+++++++++||++||..........++.||  +.+++|+.+++ ++.++   
T Consensus       166 ~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~-m~~~r~~~  244 (346)
T TIGR03547       166 WNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP-LPPPKSSS  244 (346)
T ss_pred             ccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC-CCCCCCCc
Confidence            13789999999999999999986 6788888899999999999764333334555565  57789999886 44322   


Q ss_pred             ----cee-EEEECCEEEEEeccCC---------------------cEEEEEeCCCCceeecCCCCCCccccCCeEEEEeC
Q 040145          294 ----TGS-SVVVYEHLFVVSELER---------------------MKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACD  347 (402)
Q Consensus       294 ----~~~-~~~~~~~l~~~gg~~~---------------------~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~  347 (402)
                          .++ +++++++||++||...                     ..+++||+++++|+.+..  +|.. +..+++++.+
T Consensus       245 ~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~--lp~~-~~~~~~~~~~  321 (346)
T TIGR03547       245 QEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK--LPQG-LAYGVSVSWN  321 (346)
T ss_pred             cccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC--CCCC-ceeeEEEEcC
Confidence                233 3678999999999631                     268899999999999985  4433 5666777899


Q ss_pred             CEEEEEecCc--eeeeEEEEec
Q 040145          348 CRVYVVGRNL--HVAVGHITRL  367 (402)
Q Consensus       348 ~~i~v~GG~~--~~~~~~v~~~  367 (402)
                      |+|||+||..  .....+|+.+
T Consensus       322 ~~iyv~GG~~~~~~~~~~v~~~  343 (346)
T TIGR03547       322 NGVLLIGGENSGGKAVTDVYLL  343 (346)
T ss_pred             CEEEEEeccCCCCCEeeeEEEE
Confidence            9999999976  3456777765

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=2.9e-34  Score=275.44  Aligned_cols=202  Identities=17%  Similarity=0.272  Sum_probs=173.8

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR  235 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  235 (402)
                      ++.||++||.+..  ...+.++.|||.+++|..+++|+.+|..+++++++++||++||.++    .+++++||+.+++|+
T Consensus       271 ~~~lyviGG~~~~--~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~W~  344 (480)
T PHA02790        271 GEVVYLIGGWMNN--EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN----PTSVERWFHGDAAWV  344 (480)
T ss_pred             CCEEEEEcCCCCC--CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC----CCceEEEECCCCeEE
Confidence            8999999998532  3567899999999999999999999999999999999999999753    356899999999999


Q ss_pred             EcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcE
Q 040145          236 TIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMK  314 (402)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~  314 (402)
                      .+++||.+|..+++++++|+||++||..+.   .+.+++||+.+++|+.+++ ++.++..++ ++++|+||++||.    
T Consensus       345 ~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~~IYv~GG~----  416 (480)
T PHA02790        345 NMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGRRLFLVGRN----  416 (480)
T ss_pred             ECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCC-CCCccccceEEEECCEEEEECCc----
Confidence            999999999999999999999999997532   2578999999999999987 655555554 6899999999984    


Q ss_pred             EEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee-eeEEEEecccccccC
Q 040145          315 LKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV-AVGHITRLSTSEKKW  374 (402)
Q Consensus       315 ~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~-~~~~v~~~~~~~~~~  374 (402)
                      +.+||+++++|+.++.++.|   |..+++++.+|+||++||.... ....|++|||..+.|
T Consensus       417 ~e~ydp~~~~W~~~~~m~~~---r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        417 AEFYCESSNTWTLIDDPIYP---RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             eEEecCCCCcEeEcCCCCCC---ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence            68999999999999854444   7788999999999999996532 247899999988843

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=4.9e-34  Score=266.54  Aligned_cols=260  Identities=19%  Similarity=0.275  Sum_probs=195.3

Q ss_pred             CCCCCeEEEEEEeCCCCceeEEEeecC--CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC----CCCCc
Q 040145          101 GFKDPWLFVFAFHKCTGKIQWQVLDLT--HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV----DCPLD  174 (402)
Q Consensus       101 ~~~~~~l~~~gg~~~~~~~~~~~~d~~--~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~----~~~~~  174 (402)
                      ...++.||++||...   ..++.||+.  +++|..+++++..+   +..++++++  ++.||++||.....    ....+
T Consensus        35 ~~~~~~iyv~gG~~~---~~~~~~d~~~~~~~W~~l~~~p~~~---r~~~~~v~~--~~~IYV~GG~~~~~~~~~~~~~~  106 (376)
T PRK14131         35 AIDNNTVYVGLGSAG---TSWYKLDLNAPSKGWTKIAAFPGGP---REQAVAAFI--DGKLYVFGGIGKTNSEGSPQVFD  106 (376)
T ss_pred             EEECCEEEEEeCCCC---CeEEEEECCCCCCCeEECCcCCCCC---cccceEEEE--CCEEEEEcCCCCCCCCCceeEcc
Confidence            345889999987532   347889886  47899999887422   245566666  99999999985311    12467


Q ss_pred             eEEEEECCCCceeecCC-CcccccceEEEE-ECCEEEEEcCCCCCC---------------------------------C
Q 040145          175 LVLKYEMQKNRWTVMNK-MITARSFFASGV-IGGMIYVAGGSSADL---------------------------------F  219 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~---------------------------------~  219 (402)
                      ++++||+.+++|+.+++ .|.++..|++++ .+++||++||.....                                 .
T Consensus       107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (376)
T PRK14131        107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYF  186 (376)
T ss_pred             cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcC
Confidence            89999999999999985 456666777766 899999999975310                                 0


Q ss_pred             CCCeeEEEcCCCCcEEEcCCCCC-CCcceeEEEECCEEEEEcccccCCccCCcEE--EEeCCCCCeeeccccccCCC---
Q 040145          220 ELDSAEVLDPVKGNWRTIASMGT-NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQ--VYDPSTDNWESMAVGLREGW---  293 (402)
Q Consensus       220 ~~~~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~--~yd~~~~~W~~~~~~~~~~~---  293 (402)
                      ..+++++||+.+++|+.++++|. ++..++++.++++||++||..........++  .||+++++|+.+++ ++.++   
T Consensus       187 ~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~p~~~~~~  265 (376)
T PRK14131        187 FNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD-LPPAPGGS  265 (376)
T ss_pred             cCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC-CCCCCcCC
Confidence            14689999999999999999996 6778888888999999999754433333443  56778999999886 43332   


Q ss_pred             -----cee-EEEECCEEEEEeccCC---------------------cEEEEEeCCCCceeecCCCCCCccccCCeEEEEe
Q 040145          294 -----TGS-SVVVYEHLFVVSELER---------------------MKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC  346 (402)
Q Consensus       294 -----~~~-~~~~~~~l~~~gg~~~---------------------~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~  346 (402)
                           .++ +++++++||++||.+.                     ..+++||+++++|+.++.+|.|   |..++++..
T Consensus       266 ~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~---r~~~~av~~  342 (376)
T PRK14131        266 SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG---LAYGVSVSW  342 (376)
T ss_pred             cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC---ccceEEEEe
Confidence                 222 3578999999999641                     2467899999999999854444   566788889


Q ss_pred             CCEEEEEecCc--eeeeEEEEecccccc
Q 040145          347 DCRVYVVGRNL--HVAVGHITRLSTSEK  372 (402)
Q Consensus       347 ~~~i~v~GG~~--~~~~~~v~~~~~~~~  372 (402)
                      +|+|||+||..  .....+|+.|.+..+
T Consensus       343 ~~~iyv~GG~~~~~~~~~~v~~~~~~~~  370 (376)
T PRK14131        343 NNGVLLIGGETAGGKAVSDVTLLSWDGK  370 (376)
T ss_pred             CCEEEEEcCCCCCCcEeeeEEEEEEcCC
Confidence            99999999965  346789999977544

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=6.9e-33  Score=254.33  Aligned_cols=245  Identities=16%  Similarity=0.182  Sum_probs=186.7

Q ss_pred             CceEEEEccCCEEEEEeCccCCC--------CCCCceEEEEE-CCC-CceeecCCCcccccceEEEEECCEEEEEcCCCC
Q 040145          147 GFRCVSIPREGTLFVCGGMVSDV--------DCPLDLVLKYE-MQK-NRWTVMNKMITARSFFASGVIGGMIYVAGGSSA  216 (402)
Q Consensus       147 ~~~~~~~~~~~~i~v~GG~~~~~--------~~~~~~~~~~d-~~t-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~  216 (402)
                      .+.++++  ++.||++||.+...        ....+++++|+ +.. .+|..+++||.+|..+++++++++||++||.++
T Consensus         6 g~~~~~~--~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~   83 (323)
T TIGR03548         6 GCYAGII--GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNS   83 (323)
T ss_pred             eEeeeEE--CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCC
Confidence            3455555  99999999986432        12346788886 332 379999999999998888999999999999876


Q ss_pred             CCCCCCeeEEEcCCCCcE----EEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCC
Q 040145          217 DLFELDSAEVLDPVKGNW----RTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREG  292 (402)
Q Consensus       217 ~~~~~~~~~~yd~~t~~W----~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~  292 (402)
                      ... .+++++||+.+++|    +.++++|.+|..+++++++++||++||.... ...+.+++||+.+++|+++++.+...
T Consensus        84 ~~~-~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~  161 (323)
T TIGR03548        84 SER-FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEP  161 (323)
T ss_pred             CCC-ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCC
Confidence            554 78999999999987    7889999999999999999999999997533 23578999999999999998633234


Q ss_pred             CceeE-EEECCEEEEEeccCC---cEEEEEeCCCCceeecCCCC---CCccccCCeEEEEeCCEEEEEecCceee-----
Q 040145          293 WTGSS-VVVYEHLFVVSELER---MKLKVYDPSTDSWETIEGPP---LPEQICKPFAVNACDCRVYVVGRNLHVA-----  360 (402)
Q Consensus       293 ~~~~~-~~~~~~l~~~gg~~~---~~~~~yd~~~~~W~~~~~~~---~p~~~~~~~~~~~~~~~i~v~GG~~~~~-----  360 (402)
                      +..++ ++++++||++||.+.   .++++||+++++|+.++.++   .|......++++..+++|||+||.+...     
T Consensus       162 r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~  241 (323)
T TIGR03548       162 RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAV  241 (323)
T ss_pred             CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHH
Confidence            55544 689999999999752   46899999999999998542   3333233444556689999999976321     


Q ss_pred             ----------------------------eEEEEecccccccCceeeeEEEEeC----CCCCCCccccceeEEe
Q 040145          361 ----------------------------VGHITRLSTSEKKWSFSVQWQVVDA----PDNFSDLTPSSSQVLF  401 (402)
Q Consensus       361 ----------------------------~~~v~~~~~~~~~~~~~~~W~~~~~----~~~~~~~~~~~~~~~~  401 (402)
                                                  .+++++||+..+      .|+.+++    ++....+++.++++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~------~W~~~~~~p~~~r~~~~~~~~~~~iyv  308 (323)
T TIGR03548       242 IDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG------KWKSIGNSPFFARCGAALLLTGNNIFS  308 (323)
T ss_pred             hhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC------eeeEcccccccccCchheEEECCEEEE
Confidence                                        257999999888      7777663    3334445666666654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=5.8e-33  Score=272.23  Aligned_cols=244  Identities=17%  Similarity=0.252  Sum_probs=195.8

Q ss_pred             hccHhHHHhhcCchHhHHHHhhcCCCCCeEEEEEEeCCC--CceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc
Q 040145           78 AVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCT--GKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR  155 (402)
Q Consensus        78 ~v~k~W~~l~~s~~~~~~~r~~~~~~~~~l~~~gg~~~~--~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~  155 (402)
                      ...++|..+...| .  .........++.+|++||....  ...+++.||+.+++|..+++++.++    ..++++++  
T Consensus       271 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R----~~~~~~~~--  341 (534)
T PHA03098        271 SPLSEINTIIDIH-Y--VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR----KNPGVTVF--  341 (534)
T ss_pred             hhhhhcccccCcc-c--cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc----ccceEEEE--
Confidence            3355666665433 1  1112344568899999986432  2347899999999999999988554    56677766  


Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR  235 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  235 (402)
                      +++||++||....  ...+++++|||.+++|+.++++|.+|..++++.++++||++||........+.+++||+.+++|+
T Consensus       342 ~~~lyv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNS--ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCC--EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            9999999998632  45788999999999999999999999999999999999999997554444789999999999999


Q ss_pred             EcCCCCCCCcceeEEEECCEEEEEcccccCC--ccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC-
Q 040145          236 TIASMGTNMASYDAAVLDGKLLVTEGWLWPF--FVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE-  311 (402)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~--~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~-  311 (402)
                      .++++|.+|..+++++.+++||++||.....  ...+.+++||+.+++|+.+++ ++.++.+++ ++++++||++||.. 
T Consensus       420 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~iyv~GG~~~  498 (534)
T PHA03098        420 KGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS-LNFPRINASLCIFNNKIYVVGGDKY  498 (534)
T ss_pred             ecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC-CCcccccceEEEECCEEEEEcCCcC
Confidence            9999999999999999999999999975432  123569999999999999986 444444444 77899999999976 


Q ss_pred             ---CcEEEEEeCCCCceeecCCCCCCc
Q 040145          312 ---RMKLKVYDPSTDSWETIEGPPLPE  335 (402)
Q Consensus       312 ---~~~~~~yd~~~~~W~~~~~~~~p~  335 (402)
                         .+.+++||+++++|+.++  .+|+
T Consensus       499 ~~~~~~v~~yd~~~~~W~~~~--~~p~  523 (534)
T PHA03098        499 EYYINEIEVYDDKTNTWTLFC--KFPK  523 (534)
T ss_pred             CcccceeEEEeCCCCEEEecC--CCcc
Confidence               468999999999999998  4553

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=264.35  Aligned_cols=203  Identities=19%  Similarity=0.265  Sum_probs=174.4

Q ss_pred             CCCeEEEEEEeCC-CCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEEC
Q 040145          103 KDPWLFVFAFHKC-TGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM  181 (402)
Q Consensus       103 ~~~~l~~~gg~~~-~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~  181 (402)
                      .++.+|++||... .....++.|||.+++|..+++|+.++    ..++.+++  ++.||++||.+.     .+++++|||
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r----~~~~~v~~--~~~iYviGG~~~-----~~sve~ydp  338 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR----LYASGVPA--NNKLYVVGGLPN-----PTSVERWFH  338 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh----hcceEEEE--CCEEEEECCcCC-----CCceEEEEC
Confidence            5788999998643 34456889999999999999998655    55666666  999999999742     257999999


Q ss_pred             CCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcc
Q 040145          182 QKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEG  261 (402)
Q Consensus       182 ~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG  261 (402)
                      .+++|..+++||.+|..+++++++++||++||.++.   .+.+++|||.+++|+.+++|+.+|..+++++++|+||++||
T Consensus       339 ~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG  415 (480)
T PHA02790        339 GDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR  415 (480)
T ss_pred             CCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC
Confidence            999999999999999999999999999999998543   36799999999999999999999999999999999999998


Q ss_pred             cccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecC
Q 040145          262 WLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       262 ~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~  329 (402)
                      .         +++||+++++|+.+++ ++.++.+++ ++++|+||++||.+    ...+++||+.+++|+...
T Consensus       416 ~---------~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~  478 (480)
T PHA02790        416 N---------AEFYCESSNTWTLIDD-PIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD  478 (480)
T ss_pred             c---------eEEecCCCCcEeEcCC-CCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence            3         6889999999999987 566555555 78999999999975    357999999999998754

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=2.9e-32  Score=252.90  Aligned_cols=249  Identities=18%  Similarity=0.250  Sum_probs=178.4

Q ss_pred             CCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEEC--CCCceeecCCCc-ccccceEEEEECCEEEE
Q 040145          134 IPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM--QKNRWTVMNKMI-TARSFFASGVIGGMIYV  210 (402)
Q Consensus       134 l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~--~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv  210 (402)
                      +++||.++    ....++++  +++|||+||..      .+++++||+  .+++|+.+++|| .+|..+++++++++||+
T Consensus         1 ~~~lp~~~----~~~~~~~~--~~~vyv~GG~~------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv   68 (346)
T TIGR03547         1 LPDLPVGF----KNGTGAII--GDKVYVGLGSA------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYV   68 (346)
T ss_pred             CCCCCccc----cCceEEEE--CCEEEEEcccc------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEE
Confidence            35566443    33444455  99999999973      257899996  578999999999 58999999999999999


Q ss_pred             EcCCCCCC-----CCCCeeEEEcCCCCcEEEcC-CCCCCCcceeEE-EECCEEEEEcccccCC-----------------
Q 040145          211 AGGSSADL-----FELDSAEVLDPVKGNWRTIA-SMGTNMASYDAA-VLDGKLLVTEGWLWPF-----------------  266 (402)
Q Consensus       211 ~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~-~~~g~ly~~gG~~~~~-----------------  266 (402)
                      +||.....     ..++++++||+.+++|+.++ .+|..+..++++ +++++||++||.....                 
T Consensus        69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  148 (346)
T TIGR03547        69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEP  148 (346)
T ss_pred             EeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchh
Confidence            99985322     13678999999999999997 456667777666 6899999999975310                 


Q ss_pred             ----------------ccCCcEEEEeCCCCCeeecccccc-CCCceeE-EEECCEEEEEeccC-----CcEEEEEe--CC
Q 040145          267 ----------------FVSPRGQVYDPSTDNWESMAVGLR-EGWTGSS-VVVYEHLFVVSELE-----RMKLKVYD--PS  321 (402)
Q Consensus       267 ----------------~~~~~~~~yd~~~~~W~~~~~~~~-~~~~~~~-~~~~~~l~~~gg~~-----~~~~~~yd--~~  321 (402)
                                      ...+.+++||+.+++|+.+++ ++ .++.+++ ++++++||++||..     ...++.||  ++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~-~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~  227 (346)
T TIGR03547       149 KDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE-NPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGG  227 (346)
T ss_pred             hhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc-CCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCC
Confidence                            013689999999999999986 44 3455554 68899999999964     13455554  57


Q ss_pred             CCceeecCCCCCCcc----ccCCeEEEEeCCEEEEEecCcee------------------eeEEEEecccccccCceeee
Q 040145          322 TDSWETIEGPPLPEQ----ICKPFAVNACDCRVYVVGRNLHV------------------AVGHITRLSTSEKKWSFSVQ  379 (402)
Q Consensus       322 ~~~W~~~~~~~~p~~----~~~~~~~~~~~~~i~v~GG~~~~------------------~~~~v~~~~~~~~~~~~~~~  379 (402)
                      +++|++++.++.|+.    .+..+.+++.+|+|||+||....                  ....+++||+..+      +
T Consensus       228 ~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~------~  301 (346)
T TIGR03547       228 KLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG------K  301 (346)
T ss_pred             CceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC------c
Confidence            789999996554421    11244567899999999996421                  1236788888776      6


Q ss_pred             EEEEeC---CCCCCCccccceeEEe
Q 040145          380 WQVVDA---PDNFSDLTPSSSQVLF  401 (402)
Q Consensus       380 W~~~~~---~~~~~~~~~~~~~~~~  401 (402)
                      |+.+.+   |+....+++.+.++++
T Consensus       302 W~~~~~lp~~~~~~~~~~~~~~iyv  326 (346)
T TIGR03547       302 WSKVGKLPQGLAYGVSVSWNNGVLL  326 (346)
T ss_pred             ccccCCCCCCceeeEEEEcCCEEEE
Confidence            766554   3333333334555543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=6.8e-32  Score=223.15  Aligned_cols=253  Identities=20%  Similarity=0.273  Sum_probs=196.8

Q ss_pred             CCCCeEEEEEEeCC------CCceeEEEeecCCCcEEeCCCC------CCC---CCCCCCCceEEEEccCCEEEEEeCcc
Q 040145          102 FKDPWLFVFAFHKC------TGKIQWQVLDLTHYCWHTIPAM------PCK---DKVCPHGFRCVSIPREGTLFVCGGMV  166 (402)
Q Consensus       102 ~~~~~l~~~gg~~~------~~~~~~~~~d~~~~~W~~l~~~------~~~---~~~~~~~~~~~~~~~~~~i~v~GG~~  166 (402)
                      ..+..||.|||...      ....++.+++..+.+|.++++-      +.+   .+..+.++..+.  .++++|+.||.+
T Consensus        21 aVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~--y~d~~yvWGGRN   98 (392)
T KOG4693|consen   21 AVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVE--YQDKAYVWGGRN   98 (392)
T ss_pred             eecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEE--EcceEEEEcCcc
Confidence            35889999998643      3455789999999999999872      111   112233444444  599999999996


Q ss_pred             CCCCCCCceEEEEECCCCceeec---CCCcccccceEEEEECCEEEEEcCCCCC-CCCCCeeEEEcCCCCcEEEc---CC
Q 040145          167 SDVDCPLDLVLKYEMQKNRWTVM---NKMITARSFFASGVIGGMIYVAGGSSAD-LFELDSAEVLDPVKGNWRTI---AS  239 (402)
Q Consensus       167 ~~~~~~~~~~~~~d~~t~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~yd~~t~~W~~~---~~  239 (402)
                      .+ +...+.++.|||.|+.|.+.   ..+|.+|.+|++++.++.+|++||..+. ...+++++++|..|.+|+.+   .+
T Consensus        99 D~-egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~  177 (392)
T KOG4693|consen   99 DD-EGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGD  177 (392)
T ss_pred             Cc-ccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCC
Confidence            43 35678999999999999874   3578899999999999999999998432 22378999999999999988   46


Q ss_pred             CCCCCcceeEEEECCEEEEEcccccCC--------ccCCcEEEEeCCCCCeeeccc--cccCCCceeE-EEECCEEEEEe
Q 040145          240 MGTNMASYDAAVLDGKLLVTEGWLWPF--------FVSPRGQVYDPSTDNWESMAV--GLREGWTGSS-VVVYEHLFVVS  308 (402)
Q Consensus       240 ~~~~~~~~~~~~~~g~ly~~gG~~~~~--------~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~-~~~~~~l~~~g  308 (402)
                      .|.-|..|+++++++.+|+|||..+..        .+-+.+..+|++|+.|...++  ..|.++..++ .+.|++||+||
T Consensus       178 PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FG  257 (392)
T KOG4693|consen  178 PPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFG  257 (392)
T ss_pred             CchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEec
Confidence            677788999999999999999986432        233567899999999998764  3355555444 78999999999


Q ss_pred             ccC------CcEEEEEeCCCCceeecCCCC-CCccccCCeEEEEeCCEEEEEecCce
Q 040145          309 ELE------RMKLKVYDPSTDSWETIEGPP-LPEQICKPFAVNACDCRVYVVGRNLH  358 (402)
Q Consensus       309 g~~------~~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~~~~~i~v~GG~~~  358 (402)
                      |++      -++++.|||++..|+.|..-. -|.. |...++++.++|+|++||...
T Consensus       258 GYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~a-RRRqC~~v~g~kv~LFGGTsP  313 (392)
T KOG4693|consen  258 GYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSA-RRRQCSVVSGGKVYLFGGTSP  313 (392)
T ss_pred             ccchhhhhhhcceeecccccchheeeeccCCCCCc-ccceeEEEECCEEEEecCCCC
Confidence            987      379999999999999986422 3333 555677888999999999653

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=1.1e-31  Score=222.02  Aligned_cols=228  Identities=16%  Similarity=0.194  Sum_probs=185.7

Q ss_pred             CCceEEEEccCCEEEEEeCccCCC---CCCCceEEEEECCCCceeecCC-------------CcccccceEEEEECCEEE
Q 040145          146 HGFRCVSIPREGTLFVCGGMVSDV---DCPLDLVLKYEMQKNRWTVMNK-------------MITARSFFASGVIGGMIY  209 (402)
Q Consensus       146 ~~~~~~~~~~~~~i~v~GG~~~~~---~~~~~~~~~~d~~t~~W~~~~~-------------~~~~r~~~~~~~~~~~iy  209 (402)
                      ..++++++  +..||-|||+....   ...--++.++|..+-+|+++|+             .|..|++|+++.+++++|
T Consensus        15 VNHAavaV--G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~y   92 (392)
T KOG4693|consen   15 VNHAAVAV--GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAY   92 (392)
T ss_pred             ccceeeee--cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEE
Confidence            56777777  99999999985332   1123478899999999999876             245599999999999999


Q ss_pred             EEcCCCCCCCCCCeeEEEcCCCCcEEEc---CCCCCCCcceeEEEECCEEEEEccccc-CCccCCcEEEEeCCCCCeeec
Q 040145          210 VAGGSSADLFELDSAEVLDPVKGNWRTI---ASMGTNMASYDAAVLDGKLLVTEGWLW-PFFVSPRGQVYDPSTDNWESM  285 (402)
Q Consensus       210 v~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~~~~~~~~~~~g~ly~~gG~~~-~~~~~~~~~~yd~~~~~W~~~  285 (402)
                      +.||.++.+..-+..++||++|+.|.+.   .-+|.+|.+|++++.++.+|+|||+.+ ....++++..+|++|.+|+++
T Consensus        93 vWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~  172 (392)
T KOG4693|consen   93 VWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREM  172 (392)
T ss_pred             EEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeeh
Confidence            9999977554478899999999999876   468999999999999999999999864 345677899999999999998


Q ss_pred             cc-cccC--CCceeEEEECCEEEEEeccC-------------CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCE
Q 040145          286 AV-GLRE--GWTGSSVVVYEHLFVVSELE-------------RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCR  349 (402)
Q Consensus       286 ~~-~~~~--~~~~~~~~~~~~l~~~gg~~-------------~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~  349 (402)
                      .. .-|.  +-++.+.++++.+|+|||.+             .+.|..+|.+|..|......++.+..|..|++.+++++
T Consensus       173 ~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~  252 (392)
T KOG4693|consen  173 HTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGK  252 (392)
T ss_pred             hccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcce
Confidence            64 2222  22344478899999999975             35799999999999998765665666888999999999


Q ss_pred             EEEEecCc---eeeeEEEEecccccccCc
Q 040145          350 VYVVGRNL---HVAVGHITRLSTSEKKWS  375 (402)
Q Consensus       350 i~v~GG~~---~~~~~~v~~~~~~~~~~~  375 (402)
                      ||++||++   +.-.+|.|.|||.+..|+
T Consensus       253 ~Y~FGGYng~ln~HfndLy~FdP~t~~W~  281 (392)
T KOG4693|consen  253 MYMFGGYNGTLNVHFNDLYCFDPKTSMWS  281 (392)
T ss_pred             EEEecccchhhhhhhcceeecccccchhe
Confidence            99999987   445699999999888443

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.98  E-value=1.4e-30  Score=243.31  Aligned_cols=254  Identities=18%  Similarity=0.232  Sum_probs=181.5

Q ss_pred             cEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC--CCceeecCCCc-ccccceEEEEECC
Q 040145          130 CWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ--KNRWTVMNKMI-TARSFFASGVIGG  206 (402)
Q Consensus       130 ~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~--t~~W~~~~~~~-~~r~~~~~~~~~~  206 (402)
                      .++.+++||.++    ...+++++  +++||++||..      .+.+++||+.  +++|..++++| .+|..++++++++
T Consensus        18 ~~~~l~~lP~~~----~~~~~~~~--~~~iyv~gG~~------~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~   85 (376)
T PRK14131         18 NAEQLPDLPVPF----KNGTGAID--NNTVYVGLGSA------GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDG   85 (376)
T ss_pred             ecccCCCCCcCc----cCCeEEEE--CCEEEEEeCCC------CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECC
Confidence            356778888544    33445555  99999999973      2358899986  47899999998 4899999999999


Q ss_pred             EEEEEcCCCC-C----CCCCCeeEEEcCCCCcEEEcCC-CCCCCcceeEEE-ECCEEEEEcccccCC-------------
Q 040145          207 MIYVAGGSSA-D----LFELDSAEVLDPVKGNWRTIAS-MGTNMASYDAAV-LDGKLLVTEGWLWPF-------------  266 (402)
Q Consensus       207 ~iyv~GG~~~-~----~~~~~~~~~yd~~t~~W~~~~~-~~~~~~~~~~~~-~~g~ly~~gG~~~~~-------------  266 (402)
                      +||++||... .    ....+++++||+.+++|+.++. +|.++..+++++ .+++||++||.....             
T Consensus        86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~  165 (376)
T PRK14131         86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGK  165 (376)
T ss_pred             EEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhccc
Confidence            9999999854 1    1225789999999999999985 466667777666 799999999975210             


Q ss_pred             --------------------ccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC-----CcEE--EEE
Q 040145          267 --------------------FVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE-----RMKL--KVY  318 (402)
Q Consensus       267 --------------------~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~-----~~~~--~~y  318 (402)
                                          ...+.+++||+.+++|+.+++.+..++.+++ +.++++||++||..     ...+  +.|
T Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~  245 (376)
T PRK14131        166 DKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKF  245 (376)
T ss_pred             chhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEe
Confidence                                0136799999999999999863323555554 67899999999953     2233  356


Q ss_pred             eCCCCceeecCCCCCCccc-----cCCeEEEEeCCEEEEEecCceee------------------eEEEEecccccccCc
Q 040145          319 DPSTDSWETIEGPPLPEQI-----CKPFAVNACDCRVYVVGRNLHVA------------------VGHITRLSTSEKKWS  375 (402)
Q Consensus       319 d~~~~~W~~~~~~~~p~~~-----~~~~~~~~~~~~i~v~GG~~~~~------------------~~~v~~~~~~~~~~~  375 (402)
                      |+++++|+++..++.++..     +.++.+++.+++|||+||.....                  ...+++||+..+   
T Consensus       246 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---  322 (376)
T PRK14131        246 TGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG---  322 (376)
T ss_pred             cCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC---
Confidence            7889999999955443210     11223567899999999965211                  135778998777   


Q ss_pred             eeeeEEE---EeCCCCCCCccccceeEEe
Q 040145          376 FSVQWQV---VDAPDNFSDLTPSSSQVLF  401 (402)
Q Consensus       376 ~~~~W~~---~~~~~~~~~~~~~~~~~~~  401 (402)
                         +|++   ++.|+..+.++..+.++++
T Consensus       323 ---~W~~~~~lp~~r~~~~av~~~~~iyv  348 (376)
T PRK14131        323 ---KWQKVGELPQGLAYGVSVSWNNGVLL  348 (376)
T ss_pred             ---cccccCcCCCCccceEEEEeCCEEEE
Confidence               5655   4445555555556666554

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.95  E-value=1.3e-25  Score=214.48  Aligned_cols=236  Identities=19%  Similarity=0.230  Sum_probs=193.7

Q ss_pred             CCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC---CCcccccceEEEEECCEEEEEcCCCCCCCC
Q 040145          144 CPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN---KMITARSFFASGVIGGMIYVAGGSSADLFE  220 (402)
Q Consensus       144 ~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~  220 (402)
                      .+..|.++.+  ++++||+||..........+++++|..+..|....   ..|.+|..|.++.++++||++||.+.....
T Consensus        60 ~R~~hs~~~~--~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~  137 (482)
T KOG0379|consen   60 PRAGHSAVLI--GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRN  137 (482)
T ss_pred             hhhccceeEE--CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCC
Confidence            3466777776  99999999986543222226999999999998854   467899999999999999999999764444


Q ss_pred             CCeeEEEcCCCCcEEEc---CCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc--cccCCCce
Q 040145          221 LDSAEVLDPVKGNWRTI---ASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGWTG  295 (402)
Q Consensus       221 ~~~~~~yd~~t~~W~~~---~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~  295 (402)
                      .++++.||+.|++|+.+   ..+|.+|.+|++++++.+||++||.+......+++++||+++.+|.++..  ..|.++.+
T Consensus       138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g  217 (482)
T KOG0379|consen  138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYG  217 (482)
T ss_pred             hhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCC
Confidence            78999999999999987   45789999999999999999999998776678899999999999999864  45566777


Q ss_pred             eE-EEECCEEEEEeccC-----CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee---eeEEEEe
Q 040145          296 SS-VVVYEHLFVVSELE-----RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV---AVGHITR  366 (402)
Q Consensus       296 ~~-~~~~~~l~~~gg~~-----~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~---~~~~v~~  366 (402)
                      ++ ++++++++++||..     .++++.+|..+.+|..+....-.+..|..|..+..++.++|+||....   ...++|.
T Consensus       218 H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~  297 (482)
T KOG0379|consen  218 HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYG  297 (482)
T ss_pred             ceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccccccccc
Confidence            66 78899999998876     469999999999999776433333448889888999999999998763   6889999


Q ss_pred             cccccccCceeeeEEEEeCCC
Q 040145          367 LSTSEKKWSFSVQWQVVDAPD  387 (402)
Q Consensus       367 ~~~~~~~~~~~~~W~~~~~~~  387 (402)
                      |+..++      .|.++....
T Consensus       298 l~~~~~------~w~~~~~~~  312 (482)
T KOG0379|consen  298 LDLETL------VWSKVESVG  312 (482)
T ss_pred             cccccc------ceeeeeccc
Confidence            988766      777766654

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.93  E-value=3.6e-24  Score=204.55  Aligned_cols=272  Identities=19%  Similarity=0.187  Sum_probs=205.3

Q ss_pred             HhHHHHhhcC--CCCCeEEEEEEeCCC-Cce--eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCcc
Q 040145           92 RFFTRRKELG--FKDPWLFVFAFHKCT-GKI--QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMV  166 (402)
Q Consensus        92 ~~~~~r~~~~--~~~~~l~~~gg~~~~-~~~--~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~  166 (402)
                      ..+..|..++  ..++.+|++||.... ...  +++++|..+..|.........+ ..+.++..+++  +.+||++||.+
T Consensus        56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p-~~r~g~~~~~~--~~~l~lfGG~~  132 (482)
T KOG0379|consen   56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEP-SPRYGHSLSAV--GDKLYLFGGTD  132 (482)
T ss_pred             CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCC-CcccceeEEEE--CCeEEEEcccc
Confidence            3445555543  348999999886432 222  5999999999998766544322 34456666676  89999999997


Q ss_pred             CCCCCCCceEEEEECCCCceeecC---CCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc---CCC
Q 040145          167 SDVDCPLDLVLKYEMQKNRWTVMN---KMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI---ASM  240 (402)
Q Consensus       167 ~~~~~~~~~~~~~d~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~  240 (402)
                      . .....++++.||+.|++|+.+.   ..|.+|.+|+++++++++||+||.+......+++++||+++.+|.++   ...
T Consensus       133 ~-~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~  211 (482)
T KOG0379|consen  133 K-KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEA  211 (482)
T ss_pred             C-CCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCC
Confidence            5 2345789999999999999875   46788999999999999999999977774589999999999999987   467


Q ss_pred             CCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc--cccCCCceeE-EEECCEEEEEeccCC-----
Q 040145          241 GTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGWTGSS-VVVYEHLFVVSELER-----  312 (402)
Q Consensus       241 ~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~-~~~~~~l~~~gg~~~-----  312 (402)
                      |.+|.+|+.++.+++++++||.......+++++.+|+.+.+|..+..  ..|.++..+. ++.+.+++++||...     
T Consensus       212 P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~  291 (482)
T KOG0379|consen  212 PSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEP  291 (482)
T ss_pred             CCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccc
Confidence            88999999999999999999988666778999999999999997663  4666777666 688999999998653     


Q ss_pred             -cEEEEEeCCCCceeecCCCC-CCccccCCeEEEEeC----CEEEEEecCc--eeeeEEEEec
Q 040145          313 -MKLKVYDPSTDSWETIEGPP-LPEQICKPFAVNACD----CRVYVVGRNL--HVAVGHITRL  367 (402)
Q Consensus       313 -~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~~~----~~i~v~GG~~--~~~~~~v~~~  367 (402)
                       .+++.||..++.|..+.... ..+..+..++.+...    ....++||..  .....++..+
T Consensus       292 l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (482)
T KOG0379|consen  292 LGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSL  354 (482)
T ss_pred             ccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccc
Confidence             46899999999999998655 333334444444322    2344555523  3333444444

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.92  E-value=2.7e-24  Score=188.46  Aligned_cols=239  Identities=13%  Similarity=0.211  Sum_probs=188.7

Q ss_pred             CCCCCCCCCceEEEEccCCEEEEEeCccCCC--CCCCceEEEEECCCCceeec--CCCcccccceEEEEEC-CEEEEEcC
Q 040145          139 CKDKVCPHGFRCVSIPREGTLFVCGGMVSDV--DCPLDLVLKYEMQKNRWTVM--NKMITARSFFASGVIG-GMIYVAGG  213 (402)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~--~~~~~~~~~~d~~t~~W~~~--~~~~~~r~~~~~~~~~-~~iyv~GG  213 (402)
                      ++++.++..+...+.+....|+++||..-++  ....+++|.||..+++|+.+  |..|.||+.|.++++. +.+|++||
T Consensus        61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG  140 (521)
T KOG1230|consen   61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG  140 (521)
T ss_pred             CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence            3344455667777766677999999986444  22468999999999999986  5678899999888875 89999999


Q ss_pred             CCC----CC-CCCCeeEEEcCCCCcEEEc--CCCCCCCcceeEEEECCEEEEEccccc---CCccCCcEEEEeCCCCCee
Q 040145          214 SSA----DL-FELDSAEVLDPVKGNWRTI--ASMGTNMASYDAAVLDGKLLVTEGWLW---PFFVSPRGQVYDPSTDNWE  283 (402)
Q Consensus       214 ~~~----~~-~~~~~~~~yd~~t~~W~~~--~~~~~~~~~~~~~~~~g~ly~~gG~~~---~~~~~~~~~~yd~~~~~W~  283 (402)
                      .-.    .. .-..++|+||..|++|+.+  +.-|.+|.+|..++...+|++|||+.+   ...+.|++++||+.+-+|+
T Consensus       141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~  220 (521)
T KOG1230|consen  141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWS  220 (521)
T ss_pred             ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeee
Confidence            721    11 1257899999999999988  567899999999999999999999854   3456789999999999999


Q ss_pred             eccccc--cCCCceeE-EEE-CCEEEEEeccC-------------CcEEEEEeCCC-----CceeecCCCCCCccccCCe
Q 040145          284 SMAVGL--REGWTGSS-VVV-YEHLFVVSELE-------------RMKLKVYDPST-----DSWETIEGPPLPEQICKPF  341 (402)
Q Consensus       284 ~~~~~~--~~~~~~~~-~~~-~~~l~~~gg~~-------------~~~~~~yd~~~-----~~W~~~~~~~~p~~~~~~~  341 (402)
                      ++.+.-  |.+|.+++ .+. +|.||+.||++             .+++|.+++.+     -.|..+....+++..|.++
T Consensus       221 Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgf  300 (521)
T KOG1230|consen  221 KLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGF  300 (521)
T ss_pred             eccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCce
Confidence            998633  66777766 344 89999999986             35899999988     5799998777777779999


Q ss_pred             EEEEe-CCEEEEEecCce----------eeeEEEEecccccccCcee
Q 040145          342 AVNAC-DCRVYVVGRNLH----------VAVGHITRLSTSEKKWSFS  377 (402)
Q Consensus       342 ~~~~~-~~~i~v~GG~~~----------~~~~~v~~~~~~~~~~~~~  377 (402)
                      ++++. +++-|.|||-..          .-.+|+|-||..-+.|.+.
T Consensus       301 sv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  301 SVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             eEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence            88865 559999999542          2357888888877766543

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=7.6e-24  Score=190.15  Aligned_cols=277  Identities=17%  Similarity=0.203  Sum_probs=205.5

Q ss_pred             hHHHhhcCchHhHHHHhhcC--CCCCeEEEEEEeCCCCceeEEEeecCCCcEEeCC---CCCCCCCCCCCCceEEEEccC
Q 040145           82 RWHLLLGNKERFFTRRKELG--FKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIP---AMPCKDKVCPHGFRCVSIPRE  156 (402)
Q Consensus        82 ~W~~l~~s~~~~~~~r~~~~--~~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~---~~~~~~~~~~~~~~~~~~~~~  156 (402)
                      +|+.+..+.+..++.|+.+.  .....+++|||.+..-...+++||..++.|.--.   ++|.+-    ..|+.++.  +
T Consensus        18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgc----AA~Gfvcd--G   91 (830)
T KOG4152|consen   18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGC----AAFGFVCD--G   91 (830)
T ss_pred             ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCch----hhcceEec--C
Confidence            67777765545566676654  3577888888887777778999999999997532   223111    44666665  8


Q ss_pred             CEEEEEeCccCCCCCCCceEEEEECCCCceeecC-------CCcccccceEEEEECCEEEEEcCCCCC--------CCCC
Q 040145          157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN-------KMITARSFFASGVIGGMIYVAGGSSAD--------LFEL  221 (402)
Q Consensus       157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~-------~~~~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~  221 (402)
                      .+||+|||+.+-+ .+++++|.+....=.|+++.       ++|.||-+|+...++++-|+|||..+.        ..++
T Consensus        92 trilvFGGMvEYG-kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYL  170 (830)
T KOG4152|consen   92 TRILVFGGMVEYG-KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYL  170 (830)
T ss_pred             ceEEEEccEeeec-cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhh
Confidence            8999999997554 67888877666666788763       356789999999999999999998322        1236


Q ss_pred             CeeEEEcCCCCc----EEEc---CCCCCCCcceeEEEE------CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc-
Q 040145          222 DSAEVLDPVKGN----WRTI---ASMGTNMASYDAAVL------DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV-  287 (402)
Q Consensus       222 ~~~~~yd~~t~~----W~~~---~~~~~~~~~~~~~~~------~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~-  287 (402)
                      +++++.+..-+.    |...   ..+|.+|..|.++++      ..++|++||..+  .++.+++..|+++-.|.+... 
T Consensus       171 nDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--~RLgDLW~Ldl~Tl~W~kp~~~  248 (830)
T KOG4152|consen  171 NDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--CRLGDLWTLDLDTLTWNKPSLS  248 (830)
T ss_pred             cceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc--ccccceeEEecceeeccccccc
Confidence            788888877543    8765   578999999999887      247999999865  456789999999999998753 


Q ss_pred             ---cccCCCceeEEEECCEEEEEeccC------------------CcEEEEEeCCCCceeecCCC-----CCCccccCCe
Q 040145          288 ---GLREGWTGSSVVVYEHLFVVSELE------------------RMKLKVYDPSTDSWETIEGP-----PLPEQICKPF  341 (402)
Q Consensus       288 ---~~~~~~~~~~~~~~~~l~~~gg~~------------------~~~~~~yd~~~~~W~~~~~~-----~~p~~~~~~~  341 (402)
                         ++|+. .+.+..++++||+|||.-                  .+.+-.+|++++.|+.+-.-     ..|+. |.+|
T Consensus       249 G~~PlPRS-LHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~-RAGH  326 (830)
T KOG4152|consen  249 GVAPLPRS-LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRA-RAGH  326 (830)
T ss_pred             CCCCCCcc-cccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccc-cccc
Confidence               23333 333468999999999963                  35788899999999977421     13433 8889


Q ss_pred             EEEEeCCEEEEEecCc--------eeeeEEEEeccc
Q 040145          342 AVNACDCRVYVVGRNL--------HVAVGHITRLST  369 (402)
Q Consensus       342 ~~~~~~~~i~v~GG~~--------~~~~~~v~~~~~  369 (402)
                      ++++++.++||..|.+        ...+.|+|.+|.
T Consensus       327 CAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT  362 (830)
T KOG4152|consen  327 CAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT  362 (830)
T ss_pred             eeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence            9999999999999955        223567777775

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.90  E-value=1.7e-22  Score=177.16  Aligned_cols=222  Identities=13%  Similarity=0.151  Sum_probs=171.7

Q ss_pred             CCeEEEEEEeC-----CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC----CCCCc
Q 040145          104 DPWLFVFAFHK-----CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV----DCPLD  174 (402)
Q Consensus       104 ~~~l~~~gg~~-----~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~----~~~~~  174 (402)
                      ...|++|||.-     ....+++|.||...++|+.+.....|+  .++++.++++. .+.+|++||.....    .-...
T Consensus        78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~--pRsshq~va~~-s~~l~~fGGEfaSPnq~qF~HYk  154 (521)
T KOG1230|consen   78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPP--PRSSHQAVAVP-SNILWLFGGEFASPNQEQFHHYK  154 (521)
T ss_pred             cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcC--CCccceeEEec-cCeEEEeccccCCcchhhhhhhh
Confidence            55899998742     123446889999999999876544332  44777777773 57999999985332    12468


Q ss_pred             eEEEEECCCCceeec--CCCcccccceEEEEECCEEEEEcCCCC---CCCCCCeeEEEcCCCCcEEEcCC---CCCCCcc
Q 040145          175 LVLKYEMQKNRWTVM--NKMITARSFFASGVIGGMIYVAGGSSA---DLFELDSAEVLDPVKGNWRTIAS---MGTNMAS  246 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~~yd~~t~~W~~~~~---~~~~~~~  246 (402)
                      ++|.||..|++|+++  +.-|.+|.+|.+++...+|+++||+..   ...+.+++++||+.|-+|.++.+   -|.+|.+
T Consensus       155 D~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSG  234 (521)
T KOG1230|consen  155 DLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSG  234 (521)
T ss_pred             heeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCc
Confidence            999999999999997  467899999999999999999999832   22347999999999999999843   4789999


Q ss_pred             eeEEEE-CCEEEEEcccc--------cCCccCCcEEEEeCCC-----CCeeeccc--cccCCCceeE--EEECCEEEEEe
Q 040145          247 YDAAVL-DGKLLVTEGWL--------WPFFVSPRGQVYDPST-----DNWESMAV--GLREGWTGSS--VVVYEHLFVVS  308 (402)
Q Consensus       247 ~~~~~~-~g~ly~~gG~~--------~~~~~~~~~~~yd~~~-----~~W~~~~~--~~~~~~~~~~--~~~~~~l~~~g  308 (402)
                      ++.++. +|.||+.||+.        ..+...++++..++.+     -.|..+.+  ..|.+|.+.+  +.-+++-|.||
T Consensus       235 cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FG  314 (521)
T KOG1230|consen  235 CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFG  314 (521)
T ss_pred             ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEec
Confidence            988887 99999999984        2334456788899887     57888865  3456666665  34478999999


Q ss_pred             ccC-------------CcEEEEEeCCCCceeec
Q 040145          309 ELE-------------RMKLKVYDPSTDSWETI  328 (402)
Q Consensus       309 g~~-------------~~~~~~yd~~~~~W~~~  328 (402)
                      |.-             .++++.||...+.|.+.
T Consensus       315 GV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  315 GVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             ceecccccchhhhhhhhhhhhheecccchhhHh
Confidence            853             47899999999999865

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.90  E-value=2.2e-22  Score=180.84  Aligned_cols=224  Identities=15%  Similarity=0.153  Sum_probs=170.8

Q ss_pred             CcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee---cCCCcccccceEEEEEC
Q 040145          129 YCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV---MNKMITARSFFASGVIG  205 (402)
Q Consensus       129 ~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~---~~~~~~~r~~~~~~~~~  205 (402)
                      -+|+.+.....+.+..+|+|.++++  ...|.+|||.++.   ..+++.+||..|++|..   ..+.|.+...|+.+..+
T Consensus        17 ~rWrrV~~~tGPvPrpRHGHRAVai--kELiviFGGGNEG---iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdG   91 (830)
T KOG4152|consen   17 VRWRRVQQSTGPVPRPRHGHRAVAI--KELIVIFGGGNEG---IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDG   91 (830)
T ss_pred             cceEEEecccCCCCCccccchheee--eeeEEEecCCccc---chhhhhhhccccceeecchhcCCCCCchhhcceEecC
Confidence            4577766554444456789999988  8999999997543   57899999999999976   35788888899999999


Q ss_pred             CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC-------CCCCCCcceeEEEECCEEEEEcccccC--------CccCC
Q 040145          206 GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA-------SMGTNMASYDAAVLDGKLLVTEGWLWP--------FFVSP  270 (402)
Q Consensus       206 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-------~~~~~~~~~~~~~~~g~ly~~gG~~~~--------~~~~~  270 (402)
                      .+||+|||..+.+.+.++.+.+......|+++.       .+|-+|-+|+...++++-|+|||..++        ..+++
T Consensus        92 trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLn  171 (830)
T KOG4152|consen   92 TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLN  171 (830)
T ss_pred             ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhc
Confidence            999999999877776777665555556677773       467789999999999999999997543        24567


Q ss_pred             cEEEEeCCCC----Ceeeccc--cccCCCceeE-EEE------CCEEEEEeccC---CcEEEEEeCCCCceeecCCCCCC
Q 040145          271 RGQVYDPSTD----NWESMAV--GLREGWTGSS-VVV------YEHLFVVSELE---RMKLKVYDPSTDSWETIEGPPLP  334 (402)
Q Consensus       271 ~~~~yd~~~~----~W~~~~~--~~~~~~~~~~-~~~------~~~l~~~gg~~---~~~~~~yd~~~~~W~~~~~~~~p  334 (402)
                      ++++.++.-+    .|+..-.  ..|.+|..+. +.+      ..+||++||..   ..++|.+|+++.+|.+..--..+
T Consensus       172 DlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~  251 (830)
T KOG4152|consen  172 DLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVA  251 (830)
T ss_pred             ceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCC
Confidence            8888888744    4876432  3444454444 333      35799999987   47999999999999987543333


Q ss_pred             ccccCCeEEEEeCCEEEEEecCc
Q 040145          335 EQICKPFAVNACDCRVYVVGRNL  357 (402)
Q Consensus       335 ~~~~~~~~~~~~~~~i~v~GG~~  357 (402)
                      +..|.-|++..+++++||+||+-
T Consensus       252 PlPRSLHsa~~IGnKMyvfGGWV  274 (830)
T KOG4152|consen  252 PLPRSLHSATTIGNKMYVFGGWV  274 (830)
T ss_pred             CCCcccccceeecceeEEeccee
Confidence            33388899999999999999965

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.79  E-value=3.7e-17  Score=142.05  Aligned_cols=246  Identities=18%  Similarity=0.243  Sum_probs=173.9

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCC--CcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC---CCCCceEE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTH--YCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV---DCPLDLVL  177 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~--~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~---~~~~~~~~  177 (402)
                      .++.+|+.-|.   ....++..|+..  ..|++++..|...+   ..-..++  .+++||++||.....   ....+++|
T Consensus        45 ig~~~YVGLGs---~G~afy~ldL~~~~k~W~~~a~FpG~~r---nqa~~a~--~~~kLyvFgG~Gk~~~~~~~~~nd~Y  116 (381)
T COG3055          45 IGDTVYVGLGS---AGTAFYVLDLKKPGKGWTKIADFPGGAR---NQAVAAV--IGGKLYVFGGYGKSVSSSPQVFNDAY  116 (381)
T ss_pred             ecceEEEEecc---CCccceehhhhcCCCCceEcccCCCccc---ccchhee--eCCeEEEeeccccCCCCCceEeeeeE
Confidence            46688888653   334488888875  46999999986652   2223333  499999999985333   23468999


Q ss_pred             EEECCCCceeecCC-CcccccceEEEEECC-EEEEEcCCCCC---------------------------------CCCCC
Q 040145          178 KYEMQKNRWTVMNK-MITARSFFASGVIGG-MIYVAGGSSAD---------------------------------LFELD  222 (402)
Q Consensus       178 ~~d~~t~~W~~~~~-~~~~r~~~~~~~~~~-~iyv~GG~~~~---------------------------------~~~~~  222 (402)
                      +|||.+++|.++.. .|..-..+..+.+++ +||++||.+..                                 .....
T Consensus       117 ~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~  196 (381)
T COG3055         117 RYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNK  196 (381)
T ss_pred             EecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccc
Confidence            99999999999864 455567777888877 99999997421                                 01235


Q ss_pred             eeEEEcCCCCcEEEcCCCCC-CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCC--CCeeeccccccCCC---cee
Q 040145          223 SAEVLDPVKGNWRTIASMGT-NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST--DNWESMAVGLREGW---TGS  296 (402)
Q Consensus       223 ~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~---~~~  296 (402)
                      ++..|||.++.|+.+...|. ++++.+.+.-++++.++-|.--++.++..+..++...  .+|..++..++...   .+.
T Consensus       197 ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGv  276 (381)
T COG3055         197 EVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGV  276 (381)
T ss_pred             cccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCcccc
Confidence            79999999999999987765 4455444445777988888777777777788888764  47999876332221   111


Q ss_pred             E----EEECCEEEEEeccC-----------------------CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCE
Q 040145          297 S----VVVYEHLFVVSELE-----------------------RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCR  349 (402)
Q Consensus       297 ~----~~~~~~l~~~gg~~-----------------------~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~  349 (402)
                      +    -..++++.+.||..                       ...|+.+|  .+.|+.+..  +|.. ......+..+++
T Consensus       277 AGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~Ge--Lp~~-l~YG~s~~~nn~  351 (381)
T COG3055         277 AGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGE--LPQG-LAYGVSLSYNNK  351 (381)
T ss_pred             ceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecc--cCCC-ccceEEEecCCc
Confidence            1    24578888888764                       24788888  789999995  5543 344466678999


Q ss_pred             EEEEecCceeee
Q 040145          350 VYVVGRNLHVAV  361 (402)
Q Consensus       350 i~v~GG~~~~~~  361 (402)
                      ||+|||......
T Consensus       352 vl~IGGE~~~Gk  363 (381)
T COG3055         352 VLLIGGETSGGK  363 (381)
T ss_pred             EEEEccccCCCe
Confidence            999999775443

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.52  E-value=3.3e-13  Score=117.71  Aligned_cols=188  Identities=22%  Similarity=0.328  Sum_probs=140.3

Q ss_pred             eecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCC--CcEEEcCCCCC-CCcceeEEEECCEEEEEcccc
Q 040145          187 TVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVK--GNWRTIASMGT-NMASYDAAVLDGKLLVTEGWL  263 (402)
Q Consensus       187 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~-~~~~~~~~~~~g~ly~~gG~~  263 (402)
                      ..+|++|.+...-+.+..++.+||--|..+     ...+..|.+.  ..|++++..|. +|.....++++++||+|||..
T Consensus        28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G-----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~G  102 (381)
T COG3055          28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAG-----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYG  102 (381)
T ss_pred             ccCCCCCccccccccceecceEEEEeccCC-----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccc
Confidence            356888888777788888999999877533     2346667764  46999999886 567778889999999999975


Q ss_pred             cC----CccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECC-EEEEEeccC--------------------------
Q 040145          264 WP----FFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYE-HLFVVSELE--------------------------  311 (402)
Q Consensus       264 ~~----~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~-~l~~~gg~~--------------------------  311 (402)
                      ..    ....+++++||+.+++|+.+....|....++. +..++ ++|++||.+                          
T Consensus       103 k~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~  182 (381)
T COG3055         103 KSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIA  182 (381)
T ss_pred             cCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHH
Confidence            32    23456889999999999999876777766666 56666 999999976                          


Q ss_pred             ------------CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeee--EEEEecccccccCcee
Q 040145          312 ------------RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAV--GHITRLSTSEKKWSFS  377 (402)
Q Consensus       312 ------------~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~--~~v~~~~~~~~~~~~~  377 (402)
                                  ...++.|||.+++|+.+..  .|-..+.+.+++.-+++|.+|-|..+...  ..++.++-..    ..
T Consensus       183 ~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~----~~  256 (381)
T COG3055         183 HYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGG----DN  256 (381)
T ss_pred             HHhCCCHHHhcccccccccccccchhhhcCc--CcccCccCcceeecCCeEEEEcceecCCccccceeEEEecc----Cc
Confidence                        2479999999999999884  44333666667777888999999775544  3444444322    34


Q ss_pred             eeEEEEeC
Q 040145          378 VQWQVVDA  385 (402)
Q Consensus       378 ~~W~~~~~  385 (402)
                      ..|.++..
T Consensus       257 ~~w~~l~~  264 (381)
T COG3055         257 LKWLKLSD  264 (381)
T ss_pred             eeeeeccC
Confidence            58998744

>PF13964 Kelch_6: Kelch motif

Probab=99.26  E-value=1.9e-11  Score=78.62  Aligned_cols=50  Identities=30%  Similarity=0.427  Sum_probs=45.3

Q ss_pred             cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCC
Q 040145          195 ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNM  244 (402)
Q Consensus       195 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~  244 (402)
                      +|..+++++++++||++||........+++++||++|++|+.+++||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence            58899999999999999999774444899999999999999999999886

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.15  E-value=1.1e-08  Score=89.26  Aligned_cols=194  Identities=12%  Similarity=0.092  Sum_probs=117.0

Q ss_pred             ceEEEEECCCCceeecCCCccccc---c--eEEEEE----CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCC
Q 040145          174 DLVLKYEMQKNRWTVMNKMITARS---F--FASGVI----GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNM  244 (402)
Q Consensus       174 ~~~~~~d~~t~~W~~~~~~~~~r~---~--~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~  244 (402)
                      ..++++||.|++|+.+|+.+.++.   .  .+...-    .-|+..+....... ....+++|+..+++|+.+...+...
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~~~   92 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPPHH   92 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccCCCCc
Confidence            379999999999999986544211   1  111111    12666665432111 2467899999999999987433221


Q ss_pred             -cceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeee-ccccccCC--C-ceeEEEECCEEEEEeccC---CcEEE
Q 040145          245 -ASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVGLREG--W-TGSSVVVYEHLFVVSELE---RMKLK  316 (402)
Q Consensus       245 -~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~--~-~~~~~~~~~~l~~~gg~~---~~~~~  316 (402)
                       .....+.+||.||.+...... .....+..||+.+.+|.+ ++.|....  . ....+.++|+|.++....   ..+||
T Consensus        93 ~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IW  171 (230)
T TIGR01640        93 PLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLW  171 (230)
T ss_pred             cccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEEE
Confidence             122377889999998754321 111269999999999995 65422211  1 122367789999886532   35788


Q ss_pred             EEe-CCCCceeecCCCCCCcc--ccC--CeEEEEeCCEEEEEecCceeeeEEEEeccccc
Q 040145          317 VYD-PSTDSWETIEGPPLPEQ--ICK--PFAVNACDCRVYVVGRNLHVAVGHITRLSTSE  371 (402)
Q Consensus       317 ~yd-~~~~~W~~~~~~~~p~~--~~~--~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~  371 (402)
                      +.+ .+.+.|++.-.++++..  ...  ....+..+|+|++..+..  ...-+..||+.+
T Consensus       172 vl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~--~~~~~~~y~~~~  229 (230)
T TIGR01640       172 VLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE--NPFYIFYYNVGE  229 (230)
T ss_pred             EECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC--CceEEEEEeccC
Confidence            885 44667997654443211  111  123456788999888741  112377777654

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF13964 Kelch_6: Kelch motif

Probab=99.12  E-value=2.3e-10  Score=73.57  Aligned_cols=48  Identities=27%  Similarity=0.475  Sum_probs=41.7

Q ss_pred             CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145          146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR  196 (402)
Q Consensus       146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r  196 (402)
                      ..++++++  +++||++||..+. ...++++++||+.|++|+.+++||.+|
T Consensus         3 ~~~s~v~~--~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    3 YGHSAVVV--GGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             ccCEEEEE--CCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence            55677776  9999999999764 467899999999999999999999887

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.04  E-value=2.2e-10  Score=104.03  Aligned_cols=182  Identities=15%  Similarity=0.140  Sum_probs=127.5

Q ss_pred             CCcEEeCCCCCC------CCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC---CCcccccc
Q 040145          128 HYCWHTIPAMPC------KDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN---KMITARSF  198 (402)
Q Consensus       128 ~~~W~~l~~~~~------~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~---~~~~~r~~  198 (402)
                      +-+|.++++...      ..+..+.+|..+....++.||+.||+++  ..-..++|.|+...+.|..+.   ..|..|..
T Consensus       238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG--~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC  315 (723)
T KOG2437|consen  238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG--TQDLADFWAYSVKENQWTCINRDTEGPGARSC  315 (723)
T ss_pred             cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc--chhHHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence            445776654321      2223457788887755669999999954  356889999999999999864   47888999


Q ss_pred             eEEEEEC--CEEEEEcCCCC-----CCCCCCeeEEEcCCCCcEEEcC------CCCCCCcceeEEEECCE--EEEEcccc
Q 040145          199 FASGVIG--GMIYVAGGSSA-----DLFELDSAEVLDPVKGNWRTIA------SMGTNMASYDAAVLDGK--LLVTEGWL  263 (402)
Q Consensus       199 ~~~~~~~--~~iyv~GG~~~-----~~~~~~~~~~yd~~t~~W~~~~------~~~~~~~~~~~~~~~g~--ly~~gG~~  263 (402)
                      |.++..-  .++|++|-.-+     .....+++|.||..++.|..+.      .-|...+.|..++.+.+  ||++||..
T Consensus       316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~  395 (723)
T KOG2437|consen  316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI  395 (723)
T ss_pred             hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence            9988764  49999986521     1122678999999999999873      23445567777777666  99999975


Q ss_pred             cCC--ccCCcEEEEeCCCCCeeeccccc---------cCCCceeE---EEECCEEEEEeccC
Q 040145          264 WPF--FVSPRGQVYDPSTDNWESMAVGL---------REGWTGSS---VVVYEHLFVVSELE  311 (402)
Q Consensus       264 ~~~--~~~~~~~~yd~~~~~W~~~~~~~---------~~~~~~~~---~~~~~~l~~~gg~~  311 (402)
                      ...  .....++.||.....|..+....         ...+.+.+   +.-+..+|++||..
T Consensus       396 ~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~  457 (723)
T KOG2437|consen  396 LTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR  457 (723)
T ss_pred             ccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence            321  22347899999999999875311         11122222   23478899999875

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.02  E-value=2.8e-10  Score=72.20  Aligned_cols=47  Identities=36%  Similarity=0.563  Sum_probs=42.0

Q ss_pred             cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCC
Q 040145          195 ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG  241 (402)
Q Consensus       195 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~  241 (402)
                      +|..+++++++++||++||.+......+++++||+.+++|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            58899999999999999999875555899999999999999998876

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=98.94  E-value=1.3e-09  Score=99.08  Aligned_cols=178  Identities=15%  Similarity=0.111  Sum_probs=125.6

Q ss_pred             CCCCceeecCCC----------cccccceEEEEECC--EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc---CCCCCCCc
Q 040145          181 MQKNRWTVMNKM----------ITARSFFASGVIGG--MIYVAGGSSADLFELDSAEVLDPVKGNWRTI---ASMGTNMA  245 (402)
Q Consensus       181 ~~t~~W~~~~~~----------~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~~~  245 (402)
                      +.+-.|.++++.          |..|.+|-++...+  .||+.||.++... +.+.|.|+...+.|+.+   ...|..|.
T Consensus       236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs  314 (723)
T KOG2437|consen  236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEGPGARS  314 (723)
T ss_pred             cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCCCcchh
Confidence            445678887642          45689999988754  9999999998877 88999999999999987   34788888


Q ss_pred             ceeEEEEC--CEEEEEcccccCC-----ccCCcEEEEeCCCCCeeecccc-----ccCCCcee-EEEECCE--EEEEecc
Q 040145          246 SYDAAVLD--GKLLVTEGWLWPF-----FVSPRGQVYDPSTDNWESMAVG-----LREGWTGS-SVVVYEH--LFVVSEL  310 (402)
Q Consensus       246 ~~~~~~~~--g~ly~~gG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~-----~~~~~~~~-~~~~~~~--l~~~gg~  310 (402)
                      .|..+..-  .++|++|-+-+..     ....++++||..++.|.-+...     -|..-+.+ .++.+.+  +||+||.
T Consensus       315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr  394 (723)
T KOG2437|consen  315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR  394 (723)
T ss_pred             hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence            88777664  4899999764322     2345799999999999988641     12222222 3556666  9999996


Q ss_pred             C-------CcEEEEEeCCCCceeecCCCC---CC----ccccCCeEE--EEeCCEEEEEecCcee
Q 040145          311 E-------RMKLKVYDPSTDSWETIEGPP---LP----EQICKPFAV--NACDCRVYVVGRNLHV  359 (402)
Q Consensus       311 ~-------~~~~~~yd~~~~~W~~~~~~~---~p----~~~~~~~~~--~~~~~~i~v~GG~~~~  359 (402)
                      .       -..++.||.....|..+..--   -+    ...|.++++  +.-+.++|++||....
T Consensus       395 ~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~  459 (723)
T KOG2437|consen  395 ILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK  459 (723)
T ss_pred             eccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence            5       246999999999998765310   00    111334433  3457789999996544

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.93  E-value=2.9e-09  Score=67.98  Aligned_cols=49  Identities=29%  Similarity=0.469  Sum_probs=43.3

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI  204 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~  204 (402)
                      +++|||+||.+.......+++++||+.+++|++++++|.+|..|+++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence            5789999999744456789999999999999999999999999998863

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.85  E-value=1e-08  Score=65.39  Aligned_cols=47  Identities=28%  Similarity=0.432  Sum_probs=40.9

Q ss_pred             cccceEEEEECCEEEEEcCC--CCCCCCCCeeEEEcCCCCcEEEcCCCC
Q 040145          195 ARSFFASGVIGGMIYVAGGS--SADLFELDSAEVLDPVKGNWRTIASMG  241 (402)
Q Consensus       195 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~t~~W~~~~~~~  241 (402)
                      +|..|++++++++||++||.  +......+++++||+++++|+.++.++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            58899999999999999999  444445889999999999999998764

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.82  E-value=6.7e-09  Score=65.77  Aligned_cols=45  Identities=27%  Similarity=0.400  Sum_probs=40.3

Q ss_pred             CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc
Q 040145          243 NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV  287 (402)
Q Consensus       243 ~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~  287 (402)
                      +|..+++++++++||++||........+.+++||+.+++|+++++
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~   45 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP   45 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence            578899999999999999998866777899999999999999986

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.81  E-value=1.4e-08  Score=64.79  Aligned_cols=47  Identities=26%  Similarity=0.386  Sum_probs=41.6

Q ss_pred             CCEEEEEcCCC-CCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE
Q 040145          205 GGMIYVAGGSS-ADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV  251 (402)
Q Consensus       205 ~~~iyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~  251 (402)
                      +++|||+||.+ ......+++++||+.+++|++++++|.+|..|++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV   48 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence            57899999997 344458999999999999999999999999999876

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.77  E-value=6.5e-09  Score=66.45  Aligned_cols=47  Identities=26%  Similarity=0.345  Sum_probs=31.2

Q ss_pred             cccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCC
Q 040145          195 ARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG  241 (402)
Q Consensus       195 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~  241 (402)
                      ||..|+++.+ +++||++||.+......+++++||+++++|++++++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            6889999988 5899999999776545899999999999999998877

>smart00612 Kelch Kelch domain

Probab=98.75  E-value=1.9e-08  Score=63.67  Aligned_cols=47  Identities=38%  Similarity=0.603  Sum_probs=41.0

Q ss_pred             EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECC
Q 040145          207 MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDG  254 (402)
Q Consensus       207 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g  254 (402)
                      +||++||...... .+++++||+.+++|+.+++|+.+|..+++++++|
T Consensus         1 ~iyv~GG~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGGQR-LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCCce-eeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            4899999865443 7899999999999999999999999998888764

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.65  E-value=1.2e-05  Score=70.09  Aligned_cols=199  Identities=11%  Similarity=0.014  Sum_probs=114.6

Q ss_pred             eeEEEeecCCCcEEeCCCCCCCCCCCCC---CceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccc
Q 040145          119 IQWQVLDLTHYCWHTIPAMPCKDKVCPH---GFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITA  195 (402)
Q Consensus       119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~---~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~  195 (402)
                      ..++++||.|+.|..+|+.+.+......   .++......+-+|+.+.....+  .....+.+|+..+++|+.+...+..
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~--~~~~~~~Vys~~~~~Wr~~~~~~~~   91 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN--RNQSEHQVYTLGSNSWRTIECSPPH   91 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC--CCCccEEEEEeCCCCccccccCCCC
Confidence            3588999999999999865432111111   1111111122366666543111  1345789999999999998743321


Q ss_pred             -ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEE-cCCCCCCC----cceeEEEECCEEEEEcccccCCccC
Q 040145          196 -RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRT-IASMGTNM----ASYDAAVLDGKLLVTEGWLWPFFVS  269 (402)
Q Consensus       196 -r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~----~~~~~~~~~g~ly~~gG~~~~~~~~  269 (402)
                       ......+.++|.+|.+........ ...+..||..+.+|++ ++ +|...    .....+.++|+|.++........  
T Consensus        92 ~~~~~~~v~~~G~lyw~~~~~~~~~-~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~--  167 (230)
T TIGR01640        92 HPLKSRGVCINGVLYYLAYTLKTNP-DYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDTNN--  167 (230)
T ss_pred             ccccCCeEEECCEEEEEEEECCCCC-cEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCCCc--
Confidence             111226678999998875422111 2379999999999995 54 33322    23456677899888765432111  


Q ss_pred             CcEEEEe-CCCCCeeeccc-c---ccCCC--cee-EEEECCEEEEEeccC-CcEEEEEeCCCC
Q 040145          270 PRGQVYD-PSTDNWESMAV-G---LREGW--TGS-SVVVYEHLFVVSELE-RMKLKVYDPSTD  323 (402)
Q Consensus       270 ~~~~~yd-~~~~~W~~~~~-~---~~~~~--~~~-~~~~~~~l~~~gg~~-~~~~~~yd~~~~  323 (402)
                      -.+++.+ -....|+++-. +   .+.-.  ... .+.-+|+|++..... ...+..||++++
T Consensus       168 ~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       168 FDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             EEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence            2566665 33557986422 1   11111  112 245678888876532 224999999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>smart00612 Kelch Kelch domain

Probab=98.63  E-value=6.4e-08  Score=61.18  Aligned_cols=47  Identities=34%  Similarity=0.537  Sum_probs=40.7

Q ss_pred             EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECC
Q 040145          158 TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGG  206 (402)
Q Consensus       158 ~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~  206 (402)
                      +||++||...  ....+++++|||.+++|+.+++|+.+|..++++++++
T Consensus         1 ~iyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDG--GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCC--CceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            4899999854  2457899999999999999999999999999888764

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.63  E-value=9.8e-08  Score=60.83  Aligned_cols=45  Identities=29%  Similarity=0.330  Sum_probs=39.1

Q ss_pred             CCcceeEEEECCEEEEEccc--ccCCccCCcEEEEeCCCCCeeeccc
Q 040145          243 NMASYDAAVLDGKLLVTEGW--LWPFFVSPRGQVYDPSTDNWESMAV  287 (402)
Q Consensus       243 ~~~~~~~~~~~g~ly~~gG~--~~~~~~~~~~~~yd~~~~~W~~~~~  287 (402)
                      +|..|++++++++||++||.  .......+.+++||+++++|+++++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~   47 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP   47 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence            57889999999999999999  3444567799999999999999875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.62  E-value=1.4e-06  Score=75.07  Aligned_cols=145  Identities=16%  Similarity=0.240  Sum_probs=95.4

Q ss_pred             eEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCC----CcEEEcC-CCCCCCcceeE
Q 040145          175 LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVK----GNWRTIA-SMGTNMASYDA  249 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~~-~~~~~~~~~~~  249 (402)
                      ...+||+.|++++.+......-+......-+|++++.||....   ...+..|++.+    ..|.+.+ .|..+|.+.++
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~  123 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA  123 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence            4668999999999876443333333333458899999998542   45677888876    5798875 58999998888


Q ss_pred             EEE-CCEEEEEcccccCCccCCcEEEEeCCCC-----Ceeeccc---cccCCCceeE-EEECCEEEEEeccCCcEEEEEe
Q 040145          250 AVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTD-----NWESMAV---GLREGWTGSS-VVVYEHLFVVSELERMKLKVYD  319 (402)
Q Consensus       250 ~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~-----~W~~~~~---~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd  319 (402)
                      ..+ ||+++++||....     ..+.|.....     .|..+..   ..+...+-.. +.-+|+||+++..   .-.+||
T Consensus       124 ~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~---~s~i~d  195 (243)
T PF07250_consen  124 TTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR---GSIIYD  195 (243)
T ss_pred             eECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC---CcEEEe
Confidence            777 8999999997521     2233332221     1222221   1222333333 4559999999775   467889


Q ss_pred             CCCCce-eecCC
Q 040145          320 PSTDSW-ETIEG  330 (402)
Q Consensus       320 ~~~~~W-~~~~~  330 (402)
                      ++++++ ++++.
T Consensus       196 ~~~n~v~~~lP~  207 (243)
T PF07250_consen  196 YKTNTVVRTLPD  207 (243)
T ss_pred             CCCCeEEeeCCC
Confidence            999977 66763

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.58  E-value=8.3e-08  Score=61.25  Aligned_cols=45  Identities=16%  Similarity=0.122  Sum_probs=30.7

Q ss_pred             CCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc
Q 040145          243 NMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV  287 (402)
Q Consensus       243 ~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~  287 (402)
                      +|..|+++.+ +++||++||........+++++||+++++|+++++
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~   46 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPS   46 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--S
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCC
Confidence            5788999888 68999999998776778899999999999999965

>PLN02772 guanylate kinase

Probab=98.46  E-value=1.4e-06  Score=79.69  Aligned_cols=83  Identities=23%  Similarity=0.255  Sum_probs=67.5

Q ss_pred             ccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc---CCCCCCCcceeEEEE-CCEEEEEcccccCCccC
Q 040145          194 TARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI---ASMGTNMASYDAAVL-DGKLLVTEGWLWPFFVS  269 (402)
Q Consensus       194 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~  269 (402)
                      .++..++++.+++++||+||.++.....+.+++||..|++|...   +..|.+|.+|+++++ +++|+++++.....   
T Consensus        23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~---   99 (398)
T PLN02772         23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD---   99 (398)
T ss_pred             CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc---
Confidence            47888999999999999999877653478999999999999875   578899999999988 68999998765332   


Q ss_pred             CcEEEEeCCC
Q 040145          270 PRGQVYDPST  279 (402)
Q Consensus       270 ~~~~~yd~~~  279 (402)
                      .++|.....|
T Consensus       100 ~~~w~l~~~t  109 (398)
T PLN02772        100 DSIWFLEVDT  109 (398)
T ss_pred             cceEEEEcCC
Confidence            3566665544

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.40  E-value=1.9e-05  Score=68.03  Aligned_cols=133  Identities=15%  Similarity=0.203  Sum_probs=84.8

Q ss_pred             CeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCC----CCeeeccccccCCCceeE
Q 040145          222 DSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST----DNWESMAVGLREGWTGSS  297 (402)
Q Consensus       222 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~----~~W~~~~~~~~~~~~~~~  297 (402)
                      .....||+.|++++.+.-....-+.-.+..-||++..+||..+.   .+.+..|++.+    ..|.+....+..+|-.++
T Consensus        46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT  122 (243)
T PF07250_consen   46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT  122 (243)
T ss_pred             EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCCCcccc
Confidence            34578999999999875433333333334449999999998652   34677888865    679988765666555554


Q ss_pred             -E-EECCEEEEEeccCCcEEEEEeCCCC-----ceeecCCCC-CCccccCCeEEEEeCCEEEEEecCc
Q 040145          298 -V-VVYEHLFVVSELERMKLKVYDPSTD-----SWETIEGPP-LPEQICKPFAVNACDCRVYVVGRNL  357 (402)
Q Consensus       298 -~-~~~~~l~~~gg~~~~~~~~yd~~~~-----~W~~~~~~~-~p~~~~~~~~~~~~~~~i~v~GG~~  357 (402)
                       . .-+|+++|+||......+.+.+...     .|..+.... .....-+.+..+..+|+||+++...
T Consensus       123 ~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~  190 (243)
T PF07250_consen  123 ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG  190 (243)
T ss_pred             ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence             3 3499999999986545554444221     121122110 0112245678888999999999953

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.38  E-value=4.5e-07  Score=57.15  Aligned_cols=42  Identities=24%  Similarity=0.544  Sum_probs=36.2

Q ss_pred             CCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhHH
Q 040145           53 IPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFT   95 (402)
Q Consensus        53 ~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~~   95 (402)
                      |..||+|++.+|+..|+..++.++..|||+|+.+..++ .+.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~-~lW~   42 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDN-SLWR   42 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCC-CHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCh-hhhh
Confidence            57899999999999999999999999999999999887 5543

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=98.35  E-value=0.00021  Score=65.41  Aligned_cols=39  Identities=18%  Similarity=0.288  Sum_probs=34.7

Q ss_pred             CCCCCCcHHHHHHhhccCc-cchhhhhhhccHhHHHhhcC
Q 040145           51 PFIPGLPDDVALNCLLRLP-VESHAACRAVCKRWHLLLGN   89 (402)
Q Consensus        51 ~~~~~Lp~dl~~~il~rlp-~~~l~~~~~v~k~W~~l~~s   89 (402)
                      ..|+.||+||+..|..||| .-++.++++||+.|++.+..
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            3689999999999999995 56999999999999998764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.31  E-value=3.5e-05  Score=67.66  Aligned_cols=270  Identities=18%  Similarity=0.204  Sum_probs=142.8

Q ss_pred             CCCCCc----HHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhHHHH-----------hh-cCCCCCeEEEEEEeCC
Q 040145           52 FIPGLP----DDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRR-----------KE-LGFKDPWLFVFAFHKC  115 (402)
Q Consensus        52 ~~~~Lp----~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~~~r-----------~~-~~~~~~~l~~~gg~~~  115 (402)
                      -+..||    +++.++||+.|...+|+.+..|||+|+.++..| .+.+.-           +. +...+...|.|...++
T Consensus        74 Fi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg-~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r~~  152 (499)
T KOG0281|consen   74 FITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDG-MLWKKLIERMVRTDSLWRGLSERRQWDQYLFKNRPN  152 (499)
T ss_pred             HHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccc-hHHHHHHHHhcchHHHHhhhhhccCcchhhccCCCC
Confidence            456789    999999999999999999999999999999999 654321           11 1223344454432221


Q ss_pred             CCc---eeEEE---------eecCCCcEEe----CCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEE
Q 040145          116 TGK---IQWQV---------LDLTHYCWHT----IPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKY  179 (402)
Q Consensus       116 ~~~---~~~~~---------~d~~~~~W~~----l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~  179 (402)
                      ...   +..+.         .+...+.|+.    +..+.++..   ..-+..++-+++...|.|-.       -+.+-++
T Consensus       153 ~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se---~skgVYClQYDD~kiVSGlr-------DnTikiW  222 (499)
T KOG0281|consen  153 DGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSE---NSKGVYCLQYDDEKIVSGLR-------DNTIKIW  222 (499)
T ss_pred             cCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcc---cCCceEEEEecchhhhcccc-------cCceEEe
Confidence            110   00110         0122334542    222333221   11122233335666666544       3367777


Q ss_pred             ECCCCceeecCCCcccccceEEE-EECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE----EECC
Q 040145          180 EMQKNRWTVMNKMITARSFFASG-VIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA----VLDG  254 (402)
Q Consensus       180 d~~t~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~----~~~g  254 (402)
                      |-.+..-   .....+..+...+ .+++++++.|..      -+++-++|..|+.      +......|.-+    .+++
T Consensus       223 D~n~~~c---~~~L~GHtGSVLCLqyd~rviisGSS------DsTvrvWDv~tge------~l~tlihHceaVLhlrf~n  287 (499)
T KOG0281|consen  223 DKNSLEC---LKILTGHTGSVLCLQYDERVIVSGSS------DSTVRVWDVNTGE------PLNTLIHHCEAVLHLRFSN  287 (499)
T ss_pred             ccccHHH---HHhhhcCCCcEEeeeccceEEEecCC------CceEEEEeccCCc------hhhHHhhhcceeEEEEEeC
Confidence            7655321   1122233333333 357787777765      4568888887764      11112222222    2233


Q ss_pred             EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCC
Q 040145          255 KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPL  333 (402)
Q Consensus       255 ~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~  333 (402)
                      .+.+....      ..++-++|+..-+=..+..-+-..+...- +-++++ |++...+...+.+++..|.+...+-    
T Consensus       288 g~mvtcSk------DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~efvRtl----  356 (499)
T KOG0281|consen  288 GYMVTCSK------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRTL----  356 (499)
T ss_pred             CEEEEecC------CceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-eEEEecCCceEEEEeccceeeehhh----
Confidence            33333332      23566666655431111110111122111 445777 5554444567888898887766543    


Q ss_pred             CccccCCeEEEEeCCEEEEEecCcee
Q 040145          334 PEQICKPFAVNACDCRVYVVGRNLHV  359 (402)
Q Consensus       334 p~~~~~~~~~~~~~~~i~v~GG~~~~  359 (402)
                      .. .+.+-++.-++|++.|-|..++.
T Consensus       357 ~g-HkRGIAClQYr~rlvVSGSSDnt  381 (499)
T KOG0281|consen  357 NG-HKRGIACLQYRDRLVVSGSSDNT  381 (499)
T ss_pred             hc-ccccceehhccCeEEEecCCCce
Confidence            21 14455777899999999987655

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.30  E-value=0.0011  Score=62.75  Aligned_cols=223  Identities=14%  Similarity=0.131  Sum_probs=127.4

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE  180 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d  180 (402)
                      .++.+|+..     ....++++|..+.+  |+.-.  +..     . .+..++ .++.||+..+        ...++.+|
T Consensus       119 ~~~~v~v~~-----~~g~l~ald~~tG~~~W~~~~--~~~-----~-~ssP~v-~~~~v~v~~~--------~g~l~ald  176 (394)
T PRK11138        119 AGGKVYIGS-----EKGQVYALNAEDGEVAWQTKV--AGE-----A-LSRPVV-SDGLVLVHTS--------NGMLQALN  176 (394)
T ss_pred             ECCEEEEEc-----CCCEEEEEECCCCCCcccccC--CCc-----e-ecCCEE-ECCEEEEECC--------CCEEEEEE
Confidence            466777643     22348899998775  76432  211     1 111122 2778887533        23799999


Q ss_pred             CCCCc--eeecCCCcc--cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCC-----C---cc
Q 040145          181 MQKNR--WTVMNKMIT--ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTN-----M---AS  246 (402)
Q Consensus       181 ~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~-----~---~~  246 (402)
                      +.|++  |+.-...+.  .+...+.++.++.+|+..+       ...+..+|+.+++  |+.-...+..     +   ..
T Consensus       177 ~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~  249 (394)
T PRK11138        177 ESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVD  249 (394)
T ss_pred             ccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccC
Confidence            99986  876433221  1222334455777777543       3457888888765  8643211111     0   11


Q ss_pred             eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCC-
Q 040145          247 YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD-  323 (402)
Q Consensus       247 ~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~-  323 (402)
                      ..-++.++.+|+.+..       ..++++|+.+++  |+.-..   .  ....+..++++|+...  ...++.+|+++. 
T Consensus       250 ~sP~v~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~---~--~~~~~~~~~~vy~~~~--~g~l~ald~~tG~  315 (394)
T PRK11138        250 TTPVVVGGVVYALAYN-------GNLVALDLRSGQIVWKREYG---S--VNDFAVDGGRIYLVDQ--NDRVYALDTRGGV  315 (394)
T ss_pred             CCcEEECCEEEEEEcC-------CeEEEEECCCCCEEEeecCC---C--ccCcEEECCEEEEEcC--CCeEEEEECCCCc
Confidence            2334568899986532       268999998874  875321   1  1123567899998754  347999999876 


Q ss_pred             -ceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEE
Q 040145          324 -SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQV  382 (402)
Q Consensus       324 -~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~  382 (402)
                       .|+.-.   +..  +...+.++.+++||+....     +.++.+|+...    +..|+.
T Consensus       316 ~~W~~~~---~~~--~~~~sp~v~~g~l~v~~~~-----G~l~~ld~~tG----~~~~~~  361 (394)
T PRK11138        316 ELWSQSD---LLH--RLLTAPVLYNGYLVVGDSE-----GYLHWINREDG----RFVAQQ  361 (394)
T ss_pred             EEEcccc---cCC--CcccCCEEECCEEEEEeCC-----CEEEEEECCCC----CEEEEE
Confidence             476422   111  2223445679999876542     34777775432    346654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.23  E-value=0.0016  Score=61.68  Aligned_cols=230  Identities=13%  Similarity=0.113  Sum_probs=129.8

Q ss_pred             CCCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCC---C-CCCCCceEEEEccCCEEEEEeCccCCCCCCCce
Q 040145          102 FKDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKD---K-VCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDL  175 (402)
Q Consensus       102 ~~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~---~-~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~  175 (402)
                      ..++.+|+....     ..+++||..+.+  |+.-..-....   . ......+.++  .++.||+.+.        ...
T Consensus        67 v~~~~vy~~~~~-----g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~--------~g~  131 (394)
T PRK11138         67 VAYNKVYAADRA-----GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSE--------KGQ  131 (394)
T ss_pred             EECCEEEEECCC-----CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcC--------CCE
Confidence            357788876522     258899988765  86422111000   0 0001111223  3778887432        237


Q ss_pred             EEEEECCCCc--eeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCC--CCcceeE
Q 040145          176 VLKYEMQKNR--WTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGT--NMASYDA  249 (402)
Q Consensus       176 ~~~~d~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~~~~~~~  249 (402)
                      ++.+|..|++  |+.-.+  .. ...+.++.++.+|+..+       ...++.||+++++  |+.-...+.  .+...+-
T Consensus       132 l~ald~~tG~~~W~~~~~--~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP  201 (394)
T PRK11138        132 VYALNAEDGEVAWQTKVA--GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAP  201 (394)
T ss_pred             EEEEECCCCCCcccccCC--Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccccCCCCC
Confidence            9999999885  866322  11 12233456788887543       3468999999876  876533221  1122233


Q ss_pred             EEECCEEEEEcccccCCccCCcEEEEeCCCC--Ceeec-cccccCC-------CceeEEEECCEEEEEeccCCcEEEEEe
Q 040145          250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD--NWESM-AVGLREG-------WTGSSVVVYEHLFVVSELERMKLKVYD  319 (402)
Q Consensus       250 ~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~--~W~~~-~~~~~~~-------~~~~~~~~~~~l~~~gg~~~~~~~~yd  319 (402)
                      ++.++.+|+..+.       ..++.+|.+++  .|+.- ..+....       .....++.++.+|+.+.  ...++.+|
T Consensus       202 ~v~~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~--~g~l~ald  272 (394)
T PRK11138        202 ATAFGGAIVGGDN-------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY--NGNLVALD  272 (394)
T ss_pred             EEECCEEEEEcCC-------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc--CCeEEEEE
Confidence            4557777775442       26788998876  48642 2111100       01122567899998654  34799999


Q ss_pred             CCCCc--eeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEE
Q 040145          320 PSTDS--WETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQV  382 (402)
Q Consensus       320 ~~~~~--W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~  382 (402)
                      +++.+  |+.-.    ..    ....+..+++||+....     +.++.+|+...    ...|+.
T Consensus       273 ~~tG~~~W~~~~----~~----~~~~~~~~~~vy~~~~~-----g~l~ald~~tG----~~~W~~  320 (394)
T PRK11138        273 LRSGQIVWKREY----GS----VNDFAVDGGRIYLVDQN-----DRVYALDTRGG----VELWSQ  320 (394)
T ss_pred             CCCCCEEEeecC----CC----ccCcEEECCEEEEEcCC-----CeEEEEECCCC----cEEEcc
Confidence            98764  87532    11    11345678999997653     45777776332    346754

>PF13854 Kelch_5: Kelch motif

Probab=98.18  E-value=4.9e-06  Score=50.84  Aligned_cols=41  Identities=27%  Similarity=0.240  Sum_probs=34.9

Q ss_pred             CcccccceEEEEECCEEEEEcCCCC-CCCCCCeeEEEcCCCC
Q 040145          192 MITARSFFASGVIGGMIYVAGGSSA-DLFELDSAEVLDPVKG  232 (402)
Q Consensus       192 ~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t~  232 (402)
                      +|.+|..|++++++++||++||... .....+++++||..+.
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence            4778999999999999999999983 4445899999998763

>PLN02772 guanylate kinase

Probab=98.16  E-value=1.5e-05  Score=73.12  Aligned_cols=81  Identities=20%  Similarity=0.130  Sum_probs=61.6

Q ss_pred             CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecc--ccccCCCceeE-EEE-CCEEEEEeccC--CcEEE
Q 040145          243 NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMA--VGLREGWTGSS-VVV-YEHLFVVSELE--RMKLK  316 (402)
Q Consensus       243 ~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~-~~~-~~~l~~~gg~~--~~~~~  316 (402)
                      ++..++++.+++++|++||.++.....+.+++||..+.+|....  -..|.++.+++ |++ +++|+++++..  ..++|
T Consensus        24 ~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w  103 (398)
T PLN02772         24 PKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIW  103 (398)
T ss_pred             CCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceE
Confidence            67788999999999999998775545679999999999999765  24555555555 445 79999997544  45777


Q ss_pred             EEeCCCC
Q 040145          317 VYDPSTD  323 (402)
Q Consensus       317 ~yd~~~~  323 (402)
                      .+..+|.
T Consensus       104 ~l~~~t~  110 (398)
T PLN02772        104 FLEVDTP  110 (398)
T ss_pred             EEEcCCH
Confidence            7777654

>PF13854 Kelch_5: Kelch motif

Probab=98.09  E-value=1e-05  Score=49.44  Aligned_cols=40  Identities=15%  Similarity=0.065  Sum_probs=34.9

Q ss_pred             CCCCCcceeEEEECCEEEEEccccc-CCccCCcEEEEeCCC
Q 040145          240 MGTNMASYDAAVLDGKLLVTEGWLW-PFFVSPRGQVYDPST  279 (402)
Q Consensus       240 ~~~~~~~~~~~~~~g~ly~~gG~~~-~~~~~~~~~~yd~~~  279 (402)
                      +|.+|..|++++++++||++||... .....+++++||+.+
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence            4789999999999999999999984 566678999999876

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.05  E-value=0.011  Score=55.82  Aligned_cols=215  Identities=17%  Similarity=0.156  Sum_probs=117.8

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE  180 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d  180 (402)
                      .++.+|+...     ...++++|+.+.+  |+.-  ++..     . ....++ .++.+|+..+        ...++.+|
T Consensus       104 ~~~~v~v~~~-----~g~l~ald~~tG~~~W~~~--~~~~-----~-~~~p~v-~~~~v~v~~~--------~g~l~a~d  161 (377)
T TIGR03300       104 DGGLVFVGTE-----KGEVIALDAEDGKELWRAK--LSSE-----V-LSPPLV-ANGLVVVRTN--------DGRLTALD  161 (377)
T ss_pred             cCCEEEEEcC-----CCEEEEEECCCCcEeeeec--cCce-----e-ecCCEE-ECCEEEEECC--------CCeEEEEE
Confidence            4566665432     2358899987765  7643  2211     1 111122 2677777532        23699999


Q ss_pred             CCCCc--eeecCCCcc--cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCC--------cc
Q 040145          181 MQKNR--WTVMNKMIT--ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNM--------AS  246 (402)
Q Consensus       181 ~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~--------~~  246 (402)
                      +.+++  |+.-...+.  .+...+.+..++.+|+ |..      ...+..+|+.+++  |+.--..+...        ..
T Consensus       162 ~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~  234 (377)
T TIGR03300       162 AATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVD  234 (377)
T ss_pred             cCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccC
Confidence            99885  765322211  1222334455666554 332      3468899988764  86432211111        11


Q ss_pred             eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCC-
Q 040145          247 YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD-  323 (402)
Q Consensus       247 ~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~-  323 (402)
                      ...++.++.+|+....       ..+++||+++++  |..-..     .....+..++++|+...  ...++.+|..+. 
T Consensus       235 ~~p~~~~~~vy~~~~~-------g~l~a~d~~tG~~~W~~~~~-----~~~~p~~~~~~vyv~~~--~G~l~~~d~~tG~  300 (377)
T TIGR03300       235 GDPVVDGGQVYAVSYQ-------GRVAALDLRSGRVLWKRDAS-----SYQGPAVDDNRLYVTDA--DGVVVALDRRSGS  300 (377)
T ss_pred             CccEEECCEEEEEEcC-------CEEEEEECCCCcEEEeeccC-----CccCceEeCCEEEEECC--CCeEEEEECCCCc
Confidence            2234568888886532       268999998764  754311     11122467889987643  457999999765 


Q ss_pred             -ceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccc
Q 040145          324 -SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTS  370 (402)
Q Consensus       324 -~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~  370 (402)
                       .|+...   +..  ....+.++.+++||+...     .+.++.+|+.
T Consensus       301 ~~W~~~~---~~~--~~~ssp~i~g~~l~~~~~-----~G~l~~~d~~  338 (377)
T TIGR03300       301 ELWKNDE---LKY--RQLTAPAVVGGYLVVGDF-----EGYLHWLSRE  338 (377)
T ss_pred             EEEcccc---ccC--CccccCEEECCEEEEEeC-----CCEEEEEECC
Confidence             476522   221  122234456888887543     2347777753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.04  E-value=0.011  Score=55.65  Aligned_cols=222  Identities=18%  Similarity=0.190  Sum_probs=121.7

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE  180 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d  180 (402)
                      .++.+|+...+     ..+++||+.+.+  |+.-..-.       . .+..++ .++.+|+.+.        ...++.+|
T Consensus        64 ~~~~v~v~~~~-----g~v~a~d~~tG~~~W~~~~~~~-------~-~~~p~v-~~~~v~v~~~--------~g~l~ald  121 (377)
T TIGR03300        64 AGGKVYAADAD-----GTVVALDAETGKRLWRVDLDER-------L-SGGVGA-DGGLVFVGTE--------KGEVIALD  121 (377)
T ss_pred             ECCEEEEECCC-----CeEEEEEccCCcEeeeecCCCC-------c-ccceEE-cCCEEEEEcC--------CCEEEEEE
Confidence            46667765422     348899988776  76422111       1 112222 3667776432        23799999


Q ss_pred             CCCCc--eeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCC--CCcceeEEEECC
Q 040145          181 MQKNR--WTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGT--NMASYDAAVLDG  254 (402)
Q Consensus       181 ~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~~~~~~~~~~~g  254 (402)
                      ..|++  |+.-..  .. .....+..++.+|+..+       ...++.+|+.+++  |+.-...+.  .+.....+..++
T Consensus       122 ~~tG~~~W~~~~~--~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~  191 (377)
T TIGR03300       122 AEDGKELWRAKLS--SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADG  191 (377)
T ss_pred             CCCCcEeeeeccC--ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECC
Confidence            98885  765322  11 11223445777777543       3558999998765  875432221  112223345577


Q ss_pred             EEEEEcccccCCccCCcEEEEeCCCC--Ceeeccc-cccC-------CCceeEEEECCEEEEEeccCCcEEEEEeCCCC-
Q 040145          255 KLLVTEGWLWPFFVSPRGQVYDPSTD--NWESMAV-GLRE-------GWTGSSVVVYEHLFVVSELERMKLKVYDPSTD-  323 (402)
Q Consensus       255 ~ly~~gG~~~~~~~~~~~~~yd~~~~--~W~~~~~-~~~~-------~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~-  323 (402)
                      .+|+ +...      ..+..+|+.++  .|+.-.. +...       ......+..++.+|+...  ...++.||+++. 
T Consensus       192 ~v~~-~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~--~g~l~a~d~~tG~  262 (377)
T TIGR03300       192 GVLV-GFAG------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY--QGRVAALDLRSGR  262 (377)
T ss_pred             EEEE-ECCC------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc--CCEEEEEECCCCc
Confidence            6654 3221      26889998876  4864211 1100       011122456888887643  347999999775 


Q ss_pred             -ceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEE
Q 040145          324 -SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQV  382 (402)
Q Consensus       324 -~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~  382 (402)
                       .|..-.    +    .....++.+++||+...     .+.++.+|....    ...|+.
T Consensus       263 ~~W~~~~----~----~~~~p~~~~~~vyv~~~-----~G~l~~~d~~tG----~~~W~~  305 (377)
T TIGR03300       263 VLWKRDA----S----SYQGPAVDDNRLYVTDA-----DGVVVALDRRSG----SELWKN  305 (377)
T ss_pred             EEEeecc----C----CccCceEeCCEEEEECC-----CCeEEEEECCCC----cEEEcc
Confidence             375531    1    12244567899998764     245777775332    346765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=98.01  E-value=0.0062  Score=56.23  Aligned_cols=124  Identities=14%  Similarity=0.166  Sum_probs=84.1

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCC------CC
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFE------LD  222 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~------~~  222 (402)
                      ..+++ .+.+|+..+..        ....+||+.|..-...|.+..+.....++.++++||++.........      .-
T Consensus        70 ~F~al-~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F  140 (342)
T PF07893_consen   70 DFFAL-HGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF  140 (342)
T ss_pred             EEEEe-cCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeE
Confidence            33343 48899988654        25889999999999999988887777778889999999876332210      22


Q ss_pred             eeEEEcC--------CCCcEEEcCCCCCCCcc-------eeEEEE-CCEEEE-EcccccCCccCCcEEEEeCCCCCeeec
Q 040145          223 SAEVLDP--------VKGNWRTIASMGTNMAS-------YDAAVL-DGKLLV-TEGWLWPFFVSPRGQVYDPSTDNWESM  285 (402)
Q Consensus       223 ~~~~yd~--------~t~~W~~~~~~~~~~~~-------~~~~~~-~g~ly~-~gG~~~~~~~~~~~~~yd~~~~~W~~~  285 (402)
                      ++..|++        .+-.|+.++++|.....       .+-+++ +..|++ +.+..      ...+.||.++.+|+..
T Consensus       141 E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~  214 (342)
T PF07893_consen  141 EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKH  214 (342)
T ss_pred             EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeec
Confidence            3444452        23368888877765432       233455 456777 33321      2589999999999999


Q ss_pred             cc
Q 040145          286 AV  287 (402)
Q Consensus       286 ~~  287 (402)
                      ..
T Consensus       215 Gd  216 (342)
T PF07893_consen  215 GD  216 (342)
T ss_pred             cc
Confidence            76

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=97.95  E-value=3.7e-06  Score=53.26  Aligned_cols=41  Identities=27%  Similarity=0.486  Sum_probs=34.7

Q ss_pred             CCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhH
Q 040145           53 IPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFF   94 (402)
Q Consensus        53 ~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~   94 (402)
                      |..||+|++.+|+.+++..++.+++.|||+|+.++.++ .+.
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~-~~~   43 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP-RLW   43 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH-HHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC-Ccc
Confidence            45799999999999999999999999999999999988 554

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.94  E-value=7.8e-06  Score=49.74  Aligned_cols=38  Identities=32%  Similarity=0.662  Sum_probs=35.3

Q ss_pred             CcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhH
Q 040145           56 LPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFF   94 (402)
Q Consensus        56 Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~   94 (402)
                      ||+|++.+|+.+++..++.++..|||+|+.++..+ .+.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~-~~~   38 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSH-DFW   38 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCh-hhh
Confidence            79999999999999999999999999999999888 553

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.87  E-value=0.015  Score=50.71  Aligned_cols=212  Identities=22%  Similarity=0.259  Sum_probs=120.3

Q ss_pred             eEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCccc
Q 040145          120 QWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITA  195 (402)
Q Consensus       120 ~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~  195 (402)
                      .+.++|+.+++  |+.-  +....    ....+..+..++.+|+..+        ...++.+|..|++  |+.-.  +.+
T Consensus         4 ~l~~~d~~tG~~~W~~~--~~~~~----~~~~~~~~~~~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~--~~~   67 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYD--LGPGI----GGPVATAVPDGGRVYVASG--------DGNLYALDAKTGKVLWRFDL--PGP   67 (238)
T ss_dssp             EEEEEETTTTEEEEEEE--CSSSC----SSEEETEEEETTEEEEEET--------TSEEEEEETTTSEEEEEEEC--SSC
T ss_pred             EEEEEECCCCCEEEEEE--CCCCC----CCccceEEEeCCEEEEEcC--------CCEEEEEECCCCCEEEEeec--ccc
Confidence            36778887765  7652  11000    1112112213888998843        3389999999986  66543  222


Q ss_pred             ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EE-EcCCCCCCC--cceeEEEECCEEEEEcccccCCccCC
Q 040145          196 RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WR-TIASMGTNM--ASYDAAVLDGKLLVTEGWLWPFFVSP  270 (402)
Q Consensus       196 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~-~~~~~~~~~--~~~~~~~~~g~ly~~gG~~~~~~~~~  270 (402)
                      .... ....++.+|+...       ...+..+|..++.  |+ .....+...  ......+.++.+|+...       ..
T Consensus        68 ~~~~-~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g  132 (238)
T PF13360_consen   68 ISGA-PVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-------SG  132 (238)
T ss_dssp             GGSG-EEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-------CS
T ss_pred             ccce-eeecccccccccc-------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-------cC
Confidence            1111 4777899988873       3478999988775  98 443323222  23334445777777653       13


Q ss_pred             cEEEEeCCCCC--eeeccccccCC-C--------ceeEEEECCEEEEEeccCCcEEEEEeCCCCc--eeecCCCCCCccc
Q 040145          271 RGQVYDPSTDN--WESMAVGLREG-W--------TGSSVVVYEHLFVVSELERMKLKVYDPSTDS--WETIEGPPLPEQI  337 (402)
Q Consensus       271 ~~~~yd~~~~~--W~~~~~~~~~~-~--------~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~--W~~~~~~~~p~~~  337 (402)
                      .+.++|+++++  |+.-.. .+.. .        .+..+..++.+|+..+.. . +..+|..+..  |+...    .   
T Consensus       133 ~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-~-~~~~d~~tg~~~w~~~~----~---  202 (238)
T PF13360_consen  133 KLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVISDGRVYVSSGDG-R-VVAVDLATGEKLWSKPI----S---  202 (238)
T ss_dssp             EEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEECCTTEEEEECCTS-S-EEEEETTTTEEEEEECS----S---
T ss_pred             cEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEEECCEEEEEcCCC-e-EEEEECCCCCEEEEecC----C---
Confidence            78999998774  765332 2221 1        112233468888876553 2 5556999886  84321    1   


Q ss_pred             cCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEE
Q 040145          338 CKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQ  381 (402)
Q Consensus       338 ~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~  381 (402)
                      .........++.||+.. ..    +.++.+|....    +..|+
T Consensus       203 ~~~~~~~~~~~~l~~~~-~~----~~l~~~d~~tG----~~~W~  237 (238)
T PF13360_consen  203 GIYSLPSVDGGTLYVTS-SD----GRLYALDLKTG----KVVWQ  237 (238)
T ss_dssp             -ECECEECCCTEEEEEE-TT----TEEEEEETTTT----EEEEE
T ss_pred             CccCCceeeCCEEEEEe-CC----CEEEEEECCCC----CEEeE
Confidence            11112556788888877 32    34788876543    45665

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.75  E-value=0.016  Score=50.54  Aligned_cols=161  Identities=22%  Similarity=0.225  Sum_probs=95.1

Q ss_pred             eEEEEECCCCc--eeecCCCcccccceE--EEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCCccee
Q 040145          175 LVLKYEMQKNR--WTVMNKMITARSFFA--SGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNMASYD  248 (402)
Q Consensus       175 ~~~~~d~~t~~--W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~  248 (402)
                      .+..+|+.+++  |+.-  +........  .+..++.+|+..+       ...+.+||..+++  |+.-.  +..... .
T Consensus         4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~--~~~~~~-~   71 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL--PGPISG-A   71 (238)
T ss_dssp             EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC--SSCGGS-G
T ss_pred             EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec--cccccc-e
Confidence            67889998885  7762  211222223  3347888888853       5789999998886  76543  222122 2


Q ss_pred             EEEECCEEEEEcccccCCccCCcEEEEeCCCC--Cee-eccccccC-CCceeE-EEECCEEEEEeccCCcEEEEEeCCCC
Q 040145          249 AAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD--NWE-SMAVGLRE-GWTGSS-VVVYEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       249 ~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~--~W~-~~~~~~~~-~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      ....++.+|+....       ..++++|..++  .|+ ........ ...... ...++.+|+...  ...+..+|+++.
T Consensus        72 ~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~l~~~d~~tG  142 (238)
T PF13360_consen   72 PVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--SGKLVALDPKTG  142 (238)
T ss_dssp             EEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET--CSEEEEEETTTT
T ss_pred             eeecccccccccce-------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec--cCcEEEEecCCC
Confidence            46778999887632       27999998776  488 34331111 222223 344666766543  458999999876


Q ss_pred             --ceeecCCCCCCccc-------cCCeEEEEeCCEEEEEecCce
Q 040145          324 --SWETIEGPPLPEQI-------CKPFAVNACDCRVYVVGRNLH  358 (402)
Q Consensus       324 --~W~~~~~~~~p~~~-------~~~~~~~~~~~~i~v~GG~~~  358 (402)
                        .|+.-.  ..+...       ......+..++.||+..+...
T Consensus       143 ~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~  184 (238)
T PF13360_consen  143 KLLWKYPV--GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR  184 (238)
T ss_dssp             EEEEEEES--STT-SS--EEEETTEEEEEECCTTEEEEECCTSS
T ss_pred             cEEEEeec--CCCCCCcceeeecccccceEEECCEEEEEcCCCe
Confidence              477643  222110       112344556788999887654

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.61  E-value=0.02  Score=50.31  Aligned_cols=199  Identities=18%  Similarity=0.147  Sum_probs=108.7

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      ++.||+..-.       ...++++|+.+++-.......    ..+++..  ++.+|+...        ....++|+.+++
T Consensus        11 ~g~l~~~D~~-------~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~   71 (246)
T PF08450_consen   11 DGRLYWVDIP-------GGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGK   71 (246)
T ss_dssp             TTEEEEEETT-------TTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET--------TCEEEEETTTTE
T ss_pred             CCEEEEEEcC-------CCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc--------CceEEEecCCCc
Confidence            6788887432       448999999998765432211    3344444  688888864        345677999999


Q ss_pred             EEEcCCCCC---CCcce--eEEEECCEEEEEcccccCCccC--CcEEEEeCCCCCeeeccccccCCCceeEEEECCE-EE
Q 040145          234 WRTIASMGT---NMASY--DAAVLDGKLLVTEGWLWPFFVS--PRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEH-LF  305 (402)
Q Consensus       234 W~~~~~~~~---~~~~~--~~~~~~g~ly~~gG~~~~~~~~--~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-l~  305 (402)
                      ++.+...+.   +....  .++.-+|.||+..-........  ..++++++. ++...+...+.. -.+.+..-+++ ||
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~-pNGi~~s~dg~~ly  149 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF-PNGIAFSPDGKTLY  149 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS-EEEEEEETTSSEEE
T ss_pred             EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc-ccceEECCcchhee
Confidence            988865531   22222  2333378898864322211111  368999998 665555432211 12222334554 66


Q ss_pred             EEeccCCcEEEEEeCCCCc--eeecCC-CCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEecccccccCceeeeEE
Q 040145          306 VVSELERMKLKVYDPSTDS--WETIEG-PPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQ  381 (402)
Q Consensus       306 ~~gg~~~~~~~~yd~~~~~--W~~~~~-~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~  381 (402)
                      +. ......|++||+....  +..... ..++......-++++ .+|+|||..-..    +.|++|+|..+      .-.
T Consensus       150 v~-ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~----~~I~~~~p~G~------~~~  218 (246)
T PF08450_consen  150 VA-DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG----GRIVVFDPDGK------LLR  218 (246)
T ss_dssp             EE-ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT----TEEEEEETTSC------EEE
T ss_pred             ec-ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC----CEEEEECCCcc------EEE
Confidence            54 4446789999986433  332110 012221111224444 478999974322    34899988644      455


Q ss_pred             EEeCC
Q 040145          382 VVDAP  386 (402)
Q Consensus       382 ~~~~~  386 (402)
                      .+..|
T Consensus       219 ~i~~p  223 (246)
T PF08450_consen  219 EIELP  223 (246)
T ss_dssp             EEE-S
T ss_pred             EEcCC
Confidence            67777

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.56  E-value=0.0065  Score=56.12  Aligned_cols=123  Identities=20%  Similarity=0.174  Sum_probs=82.4

Q ss_pred             ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCcc------CCcEEEEeC
Q 040145          204 IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFV------SPRGQVYDP  277 (402)
Q Consensus       204 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~------~~~~~~yd~  277 (402)
                      .+.+|+.++..       ..+.+||..|..-...|.++.+.....++.++++||++.........      .-.+..|+.
T Consensus        75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~  147 (342)
T PF07893_consen   75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP  147 (342)
T ss_pred             cCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence            58899999764       44899999999988888888877777778889999999876432111      112344442


Q ss_pred             --------CCCCeeeccccccCCCc------eeE-EEE-CCEEEE-EeccCCcEEEEEeCCCCceeecCCCCCC
Q 040145          278 --------STDNWESMAVGLREGWT------GSS-VVV-YEHLFV-VSELERMKLKVYDPSTDSWETIEGPPLP  334 (402)
Q Consensus       278 --------~~~~W~~~~~~~~~~~~------~~~-~~~-~~~l~~-~gg~~~~~~~~yd~~~~~W~~~~~~~~p  334 (402)
                              ....|+.+++++-....      -.+ +++ +..|+| +.+. ....+.||.++.+|+++..-.||
T Consensus       148 ~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~-~~GTysfDt~~~~W~~~GdW~LP  220 (342)
T PF07893_consen  148 PPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR-RWGTYSFDTESHEWRKHGDWMLP  220 (342)
T ss_pred             ccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCC-ceEEEEEEcCCcceeeccceecC
Confidence                    23367888763211111      122 566 666777 3222 12589999999999999876677

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=97.55  E-value=0.015  Score=50.37  Aligned_cols=105  Identities=12%  Similarity=0.095  Sum_probs=69.6

Q ss_pred             EEE-EEeCccCCCCCCCceEEEEECCCCc----e-------eecCCCcccccceEEEEE--CC--EEEEEcCCCC----C
Q 040145          158 TLF-VCGGMVSDVDCPLDLVLKYEMQKNR----W-------TVMNKMITARSFFASGVI--GG--MIYVAGGSSA----D  217 (402)
Q Consensus       158 ~i~-v~GG~~~~~~~~~~~~~~~d~~t~~----W-------~~~~~~~~~r~~~~~~~~--~~--~iyv~GG~~~----~  217 (402)
                      ..| +-||...++ ..++.+|+....+..    -       ......|.+|++|++.++  .|  ...++||..-    .
T Consensus        39 ~~YlIHGGrTPNN-ElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q  117 (337)
T PF03089_consen   39 EQYLIHGGRTPNN-ELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ  117 (337)
T ss_pred             eeEEecCCcCCCc-ccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccc
Confidence            344 456665433 556778877655432    1       113578999999988765  23  4677888731    0


Q ss_pred             ---------CCCCCeeEEEcCCCCcEE--EcCCCCCCCcceeEEEECCEEEEEcccc
Q 040145          218 ---------LFELDSAEVLDPVKGNWR--TIASMGTNMASYDAAVLDGKLLVTEGWL  263 (402)
Q Consensus       218 ---------~~~~~~~~~yd~~t~~W~--~~~~~~~~~~~~~~~~~~g~ly~~gG~~  263 (402)
                               -.+...|+.+|++-+-.+  .++++......|.+..-++.+|++||..
T Consensus       118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHs  174 (337)
T PF03089_consen  118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHS  174 (337)
T ss_pred             cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEE
Confidence                     112356777888766554  4577777778888888899999999975

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.50  E-value=0.02  Score=50.37  Aligned_cols=214  Identities=21%  Similarity=0.224  Sum_probs=115.8

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.||+..    .....++.+|+.+..-..+. .+       ...+++....++.+|+....         .+.++|+.+
T Consensus        11 ~g~l~~~D----~~~~~i~~~~~~~~~~~~~~-~~-------~~~G~~~~~~~g~l~v~~~~---------~~~~~d~~~   69 (246)
T PF08450_consen   11 DGRLYWVD----IPGGRIYRVDPDTGEVEVID-LP-------GPNGMAFDRPDGRLYVADSG---------GIAVVDPDT   69 (246)
T ss_dssp             TTEEEEEE----TTTTEEEEEETTTTEEEEEE-SS-------SEEEEEEECTTSEEEEEETT---------CEEEEETTT
T ss_pred             CCEEEEEE----cCCCEEEEEECCCCeEEEEe-cC-------CCceEEEEccCCEEEEEEcC---------ceEEEecCC
Confidence            56677764    23346889999988765432 22       11344444347889888654         467779999


Q ss_pred             CceeecCCCc-----ccccceEEEEECCEEEEEcCCCCCCCCC--CeeEEEcCCCCcEEEcC-CCCCCCcceeEEEE-CC
Q 040145          184 NRWTVMNKMI-----TARSFFASGVIGGMIYVAGGSSADLFEL--DSAEVLDPVKGNWRTIA-SMGTNMASYDAAVL-DG  254 (402)
Q Consensus       184 ~~W~~~~~~~-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~~-~g  254 (402)
                      ++++.+...+     ..+.+-.++.-++.||+..-........  ..++++++. ++.+.+. .+..+   -+.+.. ++
T Consensus        70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg  145 (246)
T PF08450_consen   70 GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDG  145 (246)
T ss_dssp             TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTS
T ss_pred             CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcc
Confidence            9988876553     2222333333467888864322211112  568999998 6655442 22111   122222 44


Q ss_pred             -EEEEEcccccCCccCCcEEEEeCCCCC--eeeccc--cccCCC---ceeEEEECCEEEEEeccCCcEEEEEeCCCCcee
Q 040145          255 -KLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAV--GLREGW---TGSSVVVYEHLFVVSELERMKLKVYDPSTDSWE  326 (402)
Q Consensus       255 -~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~--~~~~~~---~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~  326 (402)
                       .||+.-..      ...+++||+....  +.....  ..+...   .+.++--+|+||+. ......|.+||++...-.
T Consensus       146 ~~lyv~ds~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va-~~~~~~I~~~~p~G~~~~  218 (246)
T PF08450_consen  146 KTLYVADSF------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA-DWGGGRIVVFDPDGKLLR  218 (246)
T ss_dssp             SEEEEEETT------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE-EETTTEEEEEETTSCEEE
T ss_pred             hheeecccc------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE-EcCCCEEEEECCCccEEE
Confidence             57775432      3468999986433  433221  122221   12223347899986 334668999999966566


Q ss_pred             ecCCCCCCccccCCeEEEE---eCCEEEEEe
Q 040145          327 TIEGPPLPEQICKPFAVNA---CDCRVYVVG  354 (402)
Q Consensus       327 ~~~~~~~p~~~~~~~~~~~---~~~~i~v~G  354 (402)
                      ++.   +|..  ...+++.   -.+.|||..
T Consensus       219 ~i~---~p~~--~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  219 EIE---LPVP--RPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEE----SSS--SEEEEEEESTTSSEEEEEE
T ss_pred             EEc---CCCC--CEEEEEEECCCCCEEEEEe
Confidence            665   4421  2233333   235688764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=97.36  E-value=0.025  Score=49.01  Aligned_cols=105  Identities=11%  Similarity=0.110  Sum_probs=63.5

Q ss_pred             EEEEEcCCCCCCCCCCeeEEEcCCCCc--------E---EEcCCCCCCCcceeEEEE--CC--EEEEEccccc--CC---
Q 040145          207 MIYVAGGSSADLFELDSAEVLDPVKGN--------W---RTIASMGTNMASYDAAVL--DG--KLLVTEGWLW--PF---  266 (402)
Q Consensus       207 ~iyv~GG~~~~~~~~~~~~~yd~~t~~--------W---~~~~~~~~~~~~~~~~~~--~g--~ly~~gG~~~--~~---  266 (402)
                      .-++.||...+...+..+++....+..        .   ..+++.|.+|++|+..++  .|  ...+|||..-  ..   
T Consensus        40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT  119 (337)
T PF03089_consen   40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT  119 (337)
T ss_pred             eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence            445568876554446666666554322        1   123789999999987655  34  3677888631  00   


Q ss_pred             --------ccCCcEEEEeCCCCCeeecc-ccccCCCceeE-EEECCEEEEEeccC
Q 040145          267 --------FVSPRGQVYDPSTDNWESMA-VGLREGWTGSS-VVVYEHLFVVSELE  311 (402)
Q Consensus       267 --------~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~-~~~~~~l~~~gg~~  311 (402)
                              .....++.+|++.+..+.-. +.+..+...+. .+-++.+|++||+.
T Consensus       120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHs  174 (337)
T PF03089_consen  120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHS  174 (337)
T ss_pred             hhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEE
Confidence                    11235677888877665432 12444444444 57799999999986

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.35  E-value=0.033  Score=48.50  Aligned_cols=158  Identities=15%  Similarity=0.145  Sum_probs=99.8

Q ss_pred             CCceEEEEc-cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCee
Q 040145          146 HGFRCVSIP-REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSA  224 (402)
Q Consensus       146 ~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  224 (402)
                      ..|...-.. .++.+|...|..+     .+.+..+|+.|++-....++|..-.+-+++.++++||..=-.      ....
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG-----~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk------~~~~  112 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYG-----QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK------EGTG  112 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTT-----EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS------SSEE
T ss_pred             cccCccEEecCCCEEEEeCCCCC-----cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec------CCeE
Confidence            344443332 4789999888743     468999999999877666777777778999999999998654      5678


Q ss_pred             EEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCee-eccc---cccCCCceeEEEE
Q 040145          225 EVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAV---GLREGWTGSSVVV  300 (402)
Q Consensus       225 ~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~---~~~~~~~~~~~~~  300 (402)
                      ++||+.+  .+.+...+.+..+++.+.-+..+++.-|.       +.++..||++-+=. .+..   ..|.....-.=.+
T Consensus       113 f~yd~~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDGS-------~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i  183 (264)
T PF05096_consen  113 FVYDPNT--LKKIGTFPYPGEGWGLTSDGKRLIMSDGS-------SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI  183 (264)
T ss_dssp             EEEETTT--TEEEEEEE-SSS--EEEECSSCEEEE-SS-------SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred             EEEcccc--ceEEEEEecCCcceEEEcCCCEEEEECCc-------cceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence            9999986  45555566666788888767788887773       58899999863321 1221   1122222222245


Q ss_pred             CCEEEEEeccCCcEEEEEeCCCCc
Q 040145          301 YEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       301 ~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      +|.||.== ...+.|.+.||++..
T Consensus       184 ~G~IyANV-W~td~I~~Idp~tG~  206 (264)
T PF05096_consen  184 NGKIYANV-WQTDRIVRIDPETGK  206 (264)
T ss_dssp             TTEEEEEE-TTSSEEEEEETTT-B
T ss_pred             cCEEEEEe-CCCCeEEEEeCCCCe
Confidence            88877421 226789999999985

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=97.16  E-value=0.021  Score=50.84  Aligned_cols=119  Identities=18%  Similarity=0.223  Sum_probs=70.5

Q ss_pred             EEEcCCCCCCC-CCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCCeeecc
Q 040145          209 YVAGGSSADLF-ELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMA  286 (402)
Q Consensus       209 yv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~  286 (402)
                      ||-|-++..+. .-..+-.||+.+.+|..+..--.. .-...... +++||+.|-..........+..||.++.+|+.+.
T Consensus         2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~   80 (281)
T PF12768_consen    2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG   80 (281)
T ss_pred             EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecC
Confidence            45555544332 357788999999999987543111 11122223 6788888765543323457899999999999887


Q ss_pred             ccc----cCCCceeEEE--ECCEEEEEeccC--CcEEEEEeCCCCceeecCC
Q 040145          287 VGL----REGWTGSSVV--VYEHLFVVSELE--RMKLKVYDPSTDSWETIEG  330 (402)
Q Consensus       287 ~~~----~~~~~~~~~~--~~~~l~~~gg~~--~~~~~~yd~~~~~W~~~~~  330 (402)
                      ...    +.+-....+.  -.+.+++.|...  ...+..|  +..+|..+..
T Consensus        81 ~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   81 GGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             CcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence            622    2221111111  134577666543  2346666  4567998875

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=97.04  E-value=0.19  Score=43.73  Aligned_cols=232  Identities=17%  Similarity=0.162  Sum_probs=132.3

Q ss_pred             EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC-CCcccccce
Q 040145          121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN-KMITARSFF  199 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~-~~~~~r~~~  199 (402)
                      +-.+||.+.+-...+ ++...    +-|+.++- .++..+++-+.        ..+.++|+.|..-++.+ +...+..+.
T Consensus        85 iGhLdP~tGev~~yp-Lg~Ga----~Phgiv~g-pdg~~Witd~~--------~aI~R~dpkt~evt~f~lp~~~a~~nl  150 (353)
T COG4257          85 IGHLDPATGEVETYP-LGSGA----SPHGIVVG-PDGSAWITDTG--------LAIGRLDPKTLEVTRFPLPLEHADANL  150 (353)
T ss_pred             ceecCCCCCceEEEe-cCCCC----CCceEEEC-CCCCeeEecCc--------ceeEEecCcccceEEeecccccCCCcc
Confidence            346899998877665 33222    23444443 46667776432        26889999998777654 122233333


Q ss_pred             EEEEEC--CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeC
Q 040145          200 ASGVIG--GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDP  277 (402)
Q Consensus       200 ~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~  277 (402)
                      -..+++  +.++..|-....+       ..||.++.-+..+......-+-.++.-+|.+|+..-.      -+.+...|+
T Consensus       151 et~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla------gnaiaridp  217 (353)
T COG4257         151 ETAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLA------GNAIARIDP  217 (353)
T ss_pred             cceeeCCCccEEEeeccccce-------ecCcccCceeeeccCCCCCCcceEECCCCcEEEEecc------ccceEEccc
Confidence            334443  5777777543222       4566666544433222111122233448888886321      246788899


Q ss_pred             CCCCeeecccccc--CCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCCEEEEEe
Q 040145          278 STDNWESMAVGLR--EGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDCRVYVVG  354 (402)
Q Consensus       278 ~~~~W~~~~~~~~--~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~G  354 (402)
                      .+..=+.++.+-.  .......+--.+++.+.. .....+++|||.+..|.+-+   ||...-...++.+ -.|++.+.-
T Consensus       218 ~~~~aev~p~P~~~~~gsRriwsdpig~~witt-wg~g~l~rfdPs~~sW~eyp---LPgs~arpys~rVD~~grVW~se  293 (353)
T COG4257         218 FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT-WGTGSLHRFDPSVTSWIEYP---LPGSKARPYSMRVDRHGRVWLSE  293 (353)
T ss_pred             ccCCcceecCCCcccccccccccCccCcEEEec-cCCceeeEeCcccccceeee---CCCCCCCcceeeeccCCcEEeec
Confidence            8886666654222  111111133457777662 23568999999999999985   6644344445554 345666532


Q ss_pred             cCceeeeEEEEecccccccCceeeeEEEEeCCCCCCCcc
Q 040145          355 RNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLT  393 (402)
Q Consensus       355 G~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  393 (402)
                      =.    -+.+..|||++.      +-..++.|+...+.-
T Consensus       294 a~----agai~rfdpeta------~ftv~p~pr~n~gn~  322 (353)
T COG4257         294 AD----AGAIGRFDPETA------RFTVLPIPRPNSGNI  322 (353)
T ss_pred             cc----cCceeecCcccc------eEEEecCCCCCCCce
Confidence            21    234788888665      777888888777643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.00  E-value=0.24  Score=44.41  Aligned_cols=175  Identities=14%  Similarity=0.075  Sum_probs=85.2

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee-cCCCcccccc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNKMITARSF  198 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~  198 (402)
                      .+.+||+.+++-...-....      ...+......+..+|+.++.       .+.+.+||..+++... ++....+   
T Consensus        12 ~v~~~d~~t~~~~~~~~~~~------~~~~l~~~~dg~~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~---   75 (300)
T TIGR03866        12 TISVIDTATLEVTRTFPVGQ------RPRGITLSKDGKLLYVCASD-------SDTIQVIDLATGEVIGTLPSGPDP---   75 (300)
T ss_pred             EEEEEECCCCceEEEEECCC------CCCceEECCCCCEEEEEECC-------CCeEEEEECCCCcEEEeccCCCCc---
Confidence            57788887765432211111      11122222223456777653       2368999999887544 2221111   


Q ss_pred             eEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEE
Q 040145          199 FASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVY  275 (402)
Q Consensus       199 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~y  275 (402)
                      ..++..  ++.+|+.++.      ...+.+||..+.+-  +..++........+. -+|++++++...     .+.+..|
T Consensus        76 ~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~-----~~~~~~~  142 (300)
T TIGR03866        76 ELFALHPNGKILYIANED------DNLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSET-----TNMAHFI  142 (300)
T ss_pred             cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecC-----CCeEEEE
Confidence            122222  3456666543      34688999987542  211221111122222 367776665532     1245667


Q ss_pred             eCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          276 DPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       276 d~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      |..+.+-..... ...........-+++.+++++.....+.+||.++.+
T Consensus       143 d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~  190 (300)
T TIGR03866       143 DTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK  190 (300)
T ss_pred             eCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence            877654322111 111111122233566555555445679999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.87  E-value=0.27  Score=44.10  Aligned_cols=141  Identities=16%  Similarity=0.054  Sum_probs=73.0

Q ss_pred             EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145          158 TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-G-GMIYVAGGSSADLFELDSAEVLDPVKGNWR  235 (402)
Q Consensus       158 ~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  235 (402)
                      .+|+.++.+       ..+.+||+.+++-...-.... . ...++.. + ..+|+.++.      ...+.+||..+.+..
T Consensus         2 ~~~~s~~~d-------~~v~~~d~~t~~~~~~~~~~~-~-~~~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~   66 (300)
T TIGR03866         2 KAYVSNEKD-------NTISVIDTATLEVTRTFPVGQ-R-PRGITLSKDGKLLYVCASD------SDTIQVIDLATGEVI   66 (300)
T ss_pred             cEEEEecCC-------CEEEEEECCCCceEEEEECCC-C-CCceEECCCCCEEEEEECC------CCeEEEEECCCCcEE
Confidence            467776642       378899998875332211111 1 1122222 3 356777653      456889999887654


Q ss_pred             E-cCCCCCCCcceeEEEE-CC-EEEEEcccccCCccCCcEEEEeCCCCCe-eeccccccCCCceeEEEECCEEEEEeccC
Q 040145          236 T-IASMGTNMASYDAAVL-DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVGLREGWTGSSVVVYEHLFVVSELE  311 (402)
Q Consensus       236 ~-~~~~~~~~~~~~~~~~-~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~l~~~gg~~  311 (402)
                      . ++....+   ...+.. ++ .+|+.++..      ..+..||+.+.+- ..++.  ...-......-++.+++++..+
T Consensus        67 ~~~~~~~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~  135 (300)
T TIGR03866        67 GTLPSGPDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGKIVVNTSET  135 (300)
T ss_pred             EeccCCCCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEeEeeC--CCCcceEEECCCCCEEEEEecC
Confidence            3 2221111   122222 44 466654421      3688999987542 11211  1111112223467777776654


Q ss_pred             CcEEEEEeCCCCc
Q 040145          312 RMKLKVYDPSTDS  324 (402)
Q Consensus       312 ~~~~~~yd~~~~~  324 (402)
                      ...+..||..+..
T Consensus       136 ~~~~~~~d~~~~~  148 (300)
T TIGR03866       136 TNMAHFIDTKTYE  148 (300)
T ss_pred             CCeEEEEeCCCCe
Confidence            5567788987654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.76  E-value=0.032  Score=49.66  Aligned_cols=110  Identities=14%  Similarity=0.186  Sum_probs=68.3

Q ss_pred             CCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCC-----CCCCCc
Q 040145          172 PLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS-----MGTNMA  245 (402)
Q Consensus       172 ~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~-----~~~~~~  245 (402)
                      ....+..||+.+.+|..+..-.... -..+... ++++|+.|-..-.......+..||..+.+|+.++.     +|.+..
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence            4668999999999999876532221 1223333 67888888764444226678999999999998865     233322


Q ss_pred             ceeEEEEC-CEEEEEcccccCCccCCcEEEEeCCCCCeeeccc
Q 040145          246 SYDAAVLD-GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV  287 (402)
Q Consensus       246 ~~~~~~~~-g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~  287 (402)
                      .......+ +.+++.|....   ....+..||  ..+|+.+..
T Consensus        93 a~~~~~~d~~~~~~aG~~~~---g~~~l~~~d--Gs~W~~i~~  130 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSAN---GSTFLMKYD--GSSWSSIGS  130 (281)
T ss_pred             EEEeeccCCceEEEeceecC---CCceEEEEc--CCceEeccc
Confidence            22222223 35666665421   233577774  557998875

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=96.74  E-value=0.39  Score=47.15  Aligned_cols=285  Identities=18%  Similarity=0.194  Sum_probs=136.0

Q ss_pred             cCCCCCCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhHH-H-HhhcCCC---CCeEEEEEEeCC--CCce
Q 040145           47 LRAEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFT-R-RKELGFK---DPWLFVFAFHKC--TGKI  119 (402)
Q Consensus        47 ~~~~~~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~~-~-r~~~~~~---~~~l~~~gg~~~--~~~~  119 (402)
                      ..+...+..||.++...||..|+.+.+..++.||+.|+.+...- .... . +......   ..+-+... ...  ....
T Consensus       102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k  179 (537)
T KOG0274|consen  102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDD-KVWWRMCRELIGRLPPKCEKGLPLK-SGFKGRPWK  179 (537)
T ss_pred             ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhcc-chhhhhhhhhcccCCcccCcccccc-cccccchhh
Confidence            34456788999999999999999999999999999999999876 3322 1 1111110   11111110 000  0000


Q ss_pred             eEE-EeecCCCcEEeCCCCCCCCCCC--CCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145          120 QWQ-VLDLTHYCWHTIPAMPCKDKVC--PHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR  196 (402)
Q Consensus       120 ~~~-~~d~~~~~W~~l~~~~~~~~~~--~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r  196 (402)
                      ..+ ......+.|.............  .+..-+..+  .+..++. |.      ....+-+||..++.-...+.....-
T Consensus       180 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~--~~~~~~~-~s------~~~tl~~~~~~~~~~i~~~l~GH~g  250 (537)
T KOG0274|consen  180 SFYRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQL--HDGFFKS-GS------DDSTLHLWDLNNGYLILTRLVGHFG  250 (537)
T ss_pred             hhhhhhhhccccccccccccceeecccCcchhhhhee--ecCeEEe-cC------CCceeEEeecccceEEEeeccCCCC
Confidence            011 1222334455443322111000  011111111  1111122 21      2234557887776543332211111


Q ss_pred             cceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEE
Q 040145          197 SFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVY  275 (402)
Q Consensus       197 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~y  275 (402)
                      .-.+.... ++.+++.|..      ..++-+.|..++.-...-  . ..............+..+|.     ..+.+.++
T Consensus       251 ~V~~l~~~~~~~~lvsgS~------D~t~rvWd~~sg~C~~~l--~-gh~stv~~~~~~~~~~~sgs-----~D~tVkVW  316 (537)
T KOG0274|consen  251 GVWGLAFPSGGDKLVSGST------DKTERVWDCSTGECTHSL--Q-GHTSSVRCLTIDPFLLVSGS-----RDNTVKVW  316 (537)
T ss_pred             CceeEEEecCCCEEEEEec------CCcEEeEecCCCcEEEEe--c-CCCceEEEEEccCceEeecc-----CCceEEEE
Confidence            12223332 3666777765      334556666666543321  1 11111122223344444432     23578899


Q ss_pred             eCCCCCeeeccccccCCCceeE--EEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCC-EEEE
Q 040145          276 DPSTDNWESMAVGLREGWTGSS--VVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDC-RVYV  352 (402)
Q Consensus       276 d~~~~~W~~~~~~~~~~~~~~~--~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~-~i~v  352 (402)
                      |..++.-..+-..    ..+++  +.+++.+.+.|..+. .|.+||+.+.+-...    +...... .-...+++ ..++
T Consensus       317 ~v~n~~~l~l~~~----h~~~V~~v~~~~~~lvsgs~d~-~v~VW~~~~~~cl~s----l~gH~~~-V~sl~~~~~~~~~  386 (537)
T KOG0274|consen  317 DVTNGACLNLLRG----HTGPVNCVQLDEPLLVSGSYDG-TVKVWDPRTGKCLKS----LSGHTGR-VYSLIVDSENRLL  386 (537)
T ss_pred             eccCcceEEEecc----ccccEEEEEecCCEEEEEecCc-eEEEEEhhhceeeee----ecCCcce-EEEEEecCcceEE
Confidence            9886664443221    22222  456777777777755 899999986543332    2111011 12225566 6666


Q ss_pred             EecCceeeeEEEEecc
Q 040145          353 VGRNLHVAVGHITRLS  368 (402)
Q Consensus       353 ~GG~~~~~~~~v~~~~  368 (402)
                      -|+.+.  ...+|+++
T Consensus       387 Sgs~D~--~IkvWdl~  400 (537)
T KOG0274|consen  387 SGSLDT--TIKVWDLR  400 (537)
T ss_pred             eeeecc--ceEeecCC
Confidence            666552  24455554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.67  E-value=0.63  Score=44.39  Aligned_cols=146  Identities=12%  Similarity=-0.005  Sum_probs=79.7

Q ss_pred             ceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEEC
Q 040145          174 DLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLD  253 (402)
Q Consensus       174 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~  253 (402)
                      ..++++|..++.-+.+..............-+..|++....++    ...++.+|..++..+.+.......... ...-+
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~d  288 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPD  288 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCCCCE-EECCC
Confidence            5799999999876665543322222111111335665543322    356899999988877764432211111 11225


Q ss_pred             CE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCCceeecC
Q 040145          254 GK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       254 g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~~W~~~~  329 (402)
                      |+ |++.....+    ...++.+|..++.+..+... ..........-+|+.+++....  ...++.+|+.+..+..+.
T Consensus       289 g~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~  362 (417)
T TIGR02800       289 GKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFR-GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT  362 (417)
T ss_pred             CCEEEEEECCCC----CceEEEEECCCCCEEEeecC-CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc
Confidence            54 544433221    23789999988887766531 1111112223356655554432  347999999987766654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.62  E-value=0.12  Score=47.73  Aligned_cols=187  Identities=12%  Similarity=0.168  Sum_probs=99.7

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCE-EEEEeCccCCCCCCCceEEEEECC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGT-LFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      .+.+++.|.   ....++|..|-..+.  .+..+....  ++  ...+.+..+|. ..+++|.       ..-++.||..
T Consensus       225 ~plllvaG~---d~~lrifqvDGk~N~--~lqS~~l~~--fP--i~~a~f~p~G~~~i~~s~r-------rky~ysyDle  288 (514)
T KOG2055|consen  225 APLLLVAGL---DGTLRIFQVDGKVNP--KLQSIHLEK--FP--IQKAEFAPNGHSVIFTSGR-------RKYLYSYDLE  288 (514)
T ss_pred             CceEEEecC---CCcEEEEEecCccCh--hheeeeecc--Cc--cceeeecCCCceEEEeccc-------ceEEEEeecc
Confidence            344444442   344556666766665  333332211  11  12222223554 6666665       3368999999


Q ss_pred             CCceeecCCCcc--cccceEE-EEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEE
Q 040145          183 KNRWTVMNKMIT--ARSFFAS-GVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVT  259 (402)
Q Consensus       183 t~~W~~~~~~~~--~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~  259 (402)
                      +.+-.++.++..  .+..... +..++.++++-|.      ..-+++....|+.|-.--.++.......-..-+..|++.
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~------~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~  362 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLAS  362 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEccc------CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEE
Confidence            999888776542  2233333 2234455566554      345677777888775433333322222222223457777


Q ss_pred             cccccCCccCCcEEEEeCCCCCeeeccccccCCC-ceeE--EEECCEEEEEeccCCcEEEEEeCCC
Q 040145          260 EGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGW-TGSS--VVVYEHLFVVSELERMKLKVYDPST  322 (402)
Q Consensus       260 gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~-~~~~--~~~~~~l~~~gg~~~~~~~~yd~~~  322 (402)
                      ||..       .++++|+.++.-..  .....+. ++.+  ...++..+. -|.+..-|-+||.++
T Consensus       363 ~~~G-------eV~v~nl~~~~~~~--rf~D~G~v~gts~~~S~ng~ylA-~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  363 GGTG-------EVYVWNLRQNSCLH--RFVDDGSVHGTSLCISLNGSYLA-TGSDSGIVNIYDGNS  418 (514)
T ss_pred             cCCc-------eEEEEecCCcceEE--EEeecCccceeeeeecCCCceEE-eccCcceEEEeccch
Confidence            7753       79999998873211  1122222 2222  246777544 455677888998754

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.48  E-value=0.17  Score=46.45  Aligned_cols=150  Identities=16%  Similarity=0.123  Sum_probs=84.3

Q ss_pred             CEEEEEcCC-C--CCCCCC-CeeEEEcCCCC-----cEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEe
Q 040145          206 GMIYVAGGS-S--ADLFEL-DSAEVLDPVKG-----NWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYD  276 (402)
Q Consensus       206 ~~iyv~GG~-~--~~~~~~-~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd  276 (402)
                      ...+++|.. .  +..... ..+.+|+..+.     +.+.+........-.+.+.++|+|.+..|        +.+..|+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~  113 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYD  113 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEE
Confidence            356666643 1  111113 66899998885     55655444444445566677898666555        3788999


Q ss_pred             CCCCC-eeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEe-CCEEEEE
Q 040145          277 PSTDN-WESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC-DCRVYVV  353 (402)
Q Consensus       277 ~~~~~-W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~-~~~i~v~  353 (402)
                      +..+. +..... ......... .+.++.|++..-..+-.++.|+.+.++-..++.-..+   +...++..+ ++. .++
T Consensus       114 l~~~~~l~~~~~-~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~---~~v~~~~~l~d~~-~~i  188 (321)
T PF03178_consen  114 LDNSKTLLKKAF-YDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQP---RWVTAAEFLVDED-TII  188 (321)
T ss_dssp             EETTSSEEEEEE-E-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS----BEEEEEEEE-SSS-EEE
T ss_pred             ccCcccchhhhe-ecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC---ccEEEEEEecCCc-EEE
Confidence            88887 777665 322223333 5678877665444566788889877767777632233   333444444 556 555


Q ss_pred             ecCceeeeEEEEeccc
Q 040145          354 GRNLHVAVGHITRLST  369 (402)
Q Consensus       354 GG~~~~~~~~v~~~~~  369 (402)
                      ++.. .....+..+++
T Consensus       189 ~~D~-~gnl~~l~~~~  203 (321)
T PF03178_consen  189 VGDK-DGNLFVLRYNP  203 (321)
T ss_dssp             EEET-TSEEEEEEE-S
T ss_pred             EEcC-CCeEEEEEECC
Confidence            5522 22334555554

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.47  E-value=0.32  Score=45.14  Aligned_cols=191  Identities=8%  Similarity=0.023  Sum_probs=105.8

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce---EEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF---ASGVIGGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      .++.+-....+.+.+|.+     ..-.++..|-.+|.  .+..+...++..   ..+..+....+.+|.      ..-.+
T Consensus       217 ~sv~FHp~~plllvaG~d-----~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r------rky~y  283 (514)
T KOG2055|consen  217 TSVQFHPTAPLLLVAGLD-----GTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR------RKYLY  283 (514)
T ss_pred             eEEEecCCCceEEEecCC-----CcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc------ceEEE
Confidence            344443355788888884     34477777887776  343333222221   122223336777775      67789


Q ss_pred             EEcCCCCcEEEcCCCCCCC--c-ceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-C
Q 040145          226 VLDPVKGNWRTIASMGTNM--A-SYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-Y  301 (402)
Q Consensus       226 ~yd~~t~~W~~~~~~~~~~--~-~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~  301 (402)
                      .||.++.+-+++..+-.--  . ..-.+..++.+.++.|..+      .+......|+.|-.--. +...-...+..- +
T Consensus       284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s~K-ieG~v~~~~fsSds  356 (514)
T KOG2055|consen  284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITSFK-IEGVVSDFTFSSDS  356 (514)
T ss_pred             EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhheee-eccEEeeEEEecCC
Confidence            9999999888875543211  1 1223455677777777542      46666777777743211 222112222223 3


Q ss_pred             CEEEEEeccCCcEEEEEeCCCCc----eeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEecccc
Q 040145          302 EHLFVVSELERMKLKVYDPSTDS----WETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLSTS  370 (402)
Q Consensus       302 ~~l~~~gg~~~~~~~~yd~~~~~----W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~~  370 (402)
                      .+|++.||.+  .||++|...+.    |..-++       -.+.+.| ..++. |+.-|. ..++..||.++.+
T Consensus       357 k~l~~~~~~G--eV~v~nl~~~~~~~rf~D~G~-------v~gts~~~S~ng~-ylA~GS-~~GiVNIYd~~s~  419 (514)
T KOG2055|consen  357 KELLASGGTG--EVYVWNLRQNSCLHRFVDDGS-------VHGTSLCISLNGS-YLATGS-DSGIVNIYDGNSC  419 (514)
T ss_pred             cEEEEEcCCc--eEEEEecCCcceEEEEeecCc-------cceeeeeecCCCc-eEEecc-CcceEEEeccchh
Confidence            4577777764  89999998873    333221       1223333 35666 554453 3446677776543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.44  E-value=1.7  Score=46.66  Aligned_cols=240  Identities=17%  Similarity=0.148  Sum_probs=125.3

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCC--------CCCCCCCceEEEEccCCEEEEEeCccCCCCCCCce
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCK--------DKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDL  175 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~--------~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~  175 (402)
                      ++.+|+..    ....++.++|+....-..+......        ...+..-++.++...++.|||....       .+.
T Consensus       579 ~g~lyVaD----s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~-------n~~  647 (1057)
T PLN02919        579 NNRLFISD----SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE-------NHA  647 (1057)
T ss_pred             CCeEEEEE----CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-------Cce
Confidence            45667664    3344677888875543333321100        0011122444444335678887543       236


Q ss_pred             EEEEECCCCceeecCCCc-------c--------cccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC
Q 040145          176 VLKYEMQKNRWTVMNKMI-------T--------ARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA  238 (402)
Q Consensus       176 ~~~~d~~t~~W~~~~~~~-------~--------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~  238 (402)
                      +.++|+.++.-+.+..-.       .        -...+.+++.  ++.+|+....      ...+++||+.++....+.
T Consensus       648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------~~~I~v~d~~~g~v~~~~  721 (1057)
T PLN02919        648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------QHQIWEYNISDGVTRVFS  721 (1057)
T ss_pred             EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------CCeEEEEECCCCeEEEEe
Confidence            888998887655442100       0        0122334443  5789988643      466889998877654432


Q ss_pred             CC----------CC--CCcceeEEEE--CC-EEEEEcccccCCccCCcEEEEeCCCCCeeeccc--c-----c---c---
Q 040145          239 SM----------GT--NMASYDAAVL--DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--G-----L---R---  290 (402)
Q Consensus       239 ~~----------~~--~~~~~~~~~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~-----~---~---  290 (402)
                      .-          ..  .......+.+  ++ .||+....      .+.+.+||+.++....+..  +     .   .   
T Consensus       722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d  795 (1057)
T PLN02919        722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD  795 (1057)
T ss_pred             cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence            10          00  0011122222  34 58887653      2579999988765322110  0     0   0   


Q ss_pred             --------CCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCC---------CccccCCeEEEE-eCCEEEE
Q 040145          291 --------EGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPL---------PEQICKPFAVNA-CDCRVYV  352 (402)
Q Consensus       291 --------~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~---------p~~~~~~~~~~~-~~~~i~v  352 (402)
                              ..-.+.++.-+|.+|+.... ...|.+||++++....+.+...         ........++++ .+|+|||
T Consensus       796 G~g~~~~l~~P~Gvavd~dG~LYVADs~-N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV  874 (1057)
T PLN02919        796 GVGSEVLLQHPLGVLCAKDGQIYVADSY-NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV  874 (1057)
T ss_pred             CchhhhhccCCceeeEeCCCcEEEEECC-CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence                    00011223346789887554 6789999999887776654221         111123344444 4788999


Q ss_pred             EecCceeeeEEEEeccccc
Q 040145          353 VGRNLHVAVGHITRLSTSE  371 (402)
Q Consensus       353 ~GG~~~~~~~~v~~~~~~~  371 (402)
                      .-..++.    |..+|..+
T Consensus       875 aDt~Nn~----Irvid~~~  889 (1057)
T PLN02919        875 ADTNNSL----IRYLDLNK  889 (1057)
T ss_pred             EECCCCE----EEEEECCC
Confidence            8776554    45555433

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=96.27  E-value=0.064  Score=41.88  Aligned_cols=78  Identities=12%  Similarity=0.063  Sum_probs=54.5

Q ss_pred             EEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecccc--ccCCCce-eEEEECCEEEEEeccC-----CcEEEEE-eC
Q 040145          250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG--LREGWTG-SSVVVYEHLFVVSELE-----RMKLKVY-DP  320 (402)
Q Consensus       250 ~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~--~~~~~~~-~~~~~~~~l~~~gg~~-----~~~~~~y-d~  320 (402)
                      +++||.+|..+..  .....+.+.+||..+.+|+.+..|  ....... ..+.++|+|-++.-..     .-++|+. |.
T Consensus         2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~   79 (129)
T PF08268_consen    2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY   79 (129)
T ss_pred             EEECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence            4679999998776  222345899999999999988764  2222222 2368899998875433     2478888 56


Q ss_pred             CCCceeecC
Q 040145          321 STDSWETIE  329 (402)
Q Consensus       321 ~~~~W~~~~  329 (402)
                      ++..|++..
T Consensus        80 ~k~~Wsk~~   88 (129)
T PF08268_consen   80 EKQEWSKKH   88 (129)
T ss_pred             ccceEEEEE
Confidence            678899764

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.15  E-value=1.1  Score=41.32  Aligned_cols=194  Identities=15%  Similarity=0.085  Sum_probs=86.8

Q ss_pred             eEEEEEEeCCCCceeEEEeecCC-CcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECC-
Q 040145          106 WLFVFAFHKCTGKIQWQVLDLTH-YCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQ-  182 (402)
Q Consensus       106 ~l~~~gg~~~~~~~~~~~~d~~~-~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~-  182 (402)
                      .+|+....    ...+..||..+ .++..+...+...    . ....++..++ .||+.+..       ...+.+|+.. 
T Consensus         3 ~~y~~~~~----~~~I~~~~~~~~g~l~~~~~~~~~~----~-~~~l~~spd~~~lyv~~~~-------~~~i~~~~~~~   66 (330)
T PRK11028          3 IVYIASPE----SQQIHVWNLNHEGALTLLQVVDVPG----Q-VQPMVISPDKRHLYVGVRP-------EFRVLSYRIAD   66 (330)
T ss_pred             EEEEEcCC----CCCEEEEEECCCCceeeeeEEecCC----C-CccEEECCCCCEEEEEECC-------CCcEEEEEECC
Confidence            45666422    23366777653 4565554443211    1 1122232244 56664432       2467777775 


Q ss_pred             CCceeecCCCcccccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCCcceeEEEE-CC-EE
Q 040145          183 KNRWTVMNKMITARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNMASYDAAVL-DG-KL  256 (402)
Q Consensus       183 t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~-~g-~l  256 (402)
                      +++++.+...+.+.....++.. ++ .+|+..-.      ...+.+||..++.  .+.+...+.....+.++.. ++ .+
T Consensus        67 ~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l  140 (330)
T PRK11028         67 DGALTFAAESPLPGSPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTL  140 (330)
T ss_pred             CCceEEeeeecCCCCceEEEECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEE
Confidence            4566655433332222233333 34 56666432      3567778775431  1122222222222333333 45 45


Q ss_pred             EEEcccccCCccCCcEEEEeCCCC-Ceeec-----cccccCCCceeEEEECC-EEEEEeccCCcEEEEEeCC--CCceee
Q 040145          257 LVTEGWLWPFFVSPRGQVYDPSTD-NWESM-----AVGLREGWTGSSVVVYE-HLFVVSELERMKLKVYDPS--TDSWET  327 (402)
Q Consensus       257 y~~gG~~~~~~~~~~~~~yd~~~~-~W~~~-----~~~~~~~~~~~~~~~~~-~l~~~gg~~~~~~~~yd~~--~~~W~~  327 (402)
                      |+..-.      .+.+.+||+.+. .....     ..+....-.+....-++ .+|+... ..+.+.+||.+  +.+.+.
T Consensus       141 ~v~~~~------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-~~~~v~v~~~~~~~~~~~~  213 (330)
T PRK11028        141 WVPCLK------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-LNSSVDVWQLKDPHGEIEC  213 (330)
T ss_pred             EEeeCC------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-CCCEEEEEEEeCCCCCEEE
Confidence            554321      347899998763 22211     10111111111112233 5666533 25677777765  445544


Q ss_pred             c
Q 040145          328 I  328 (402)
Q Consensus       328 ~  328 (402)
                      +
T Consensus       214 ~  214 (330)
T PRK11028        214 V  214 (330)
T ss_pred             E
Confidence            3

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.11  E-value=1.4  Score=42.50  Aligned_cols=147  Identities=10%  Similarity=0.013  Sum_probs=81.0

Q ss_pred             CceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145          173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL  252 (402)
Q Consensus       173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~  252 (402)
                      ...++++|..+++-+.+...+..........-+..|++....++    ...++++|..++..+.+....... ......-
T Consensus       241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~~-~~p~wSp  315 (448)
T PRK04792        241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAID-TEPSWHP  315 (448)
T ss_pred             CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCCc-cceEECC
Confidence            35899999999877666554322221222222345665543322    457899999999887765422111 1111222


Q ss_pred             CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCCceeecC
Q 040145          253 DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       253 ~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~~W~~~~  329 (402)
                      +|+ |++.....+    ...++.+|+.+++++.+.... .........-+|+.+++.+..  ...++.+|+.+.....+.
T Consensus       316 DG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt  390 (448)
T PRK04792        316 DGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT  390 (448)
T ss_pred             CCCEEEEEECCCC----CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc
Confidence            554 555432221    247899999999888775211 111112233355444443322  347899999988877665

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.99  E-value=1.3  Score=41.06  Aligned_cols=242  Identities=14%  Similarity=0.133  Sum_probs=115.0

Q ss_pred             CCCeEEEEEEeC-CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEE-ccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145          103 KDPWLFVFAFHK-CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSI-PREGTLFVCGGMVSDVDCPLDLVLKYE  180 (402)
Q Consensus       103 ~~~~l~~~gg~~-~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~d  180 (402)
                      .+..||+..... .......+.++..+.+.+.+...+...    ..-+.+++ ..+..||+..-.       ...+.+|+
T Consensus        47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g----~~p~~i~~~~~g~~l~vany~-------~g~v~v~~  115 (345)
T PF10282_consen   47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG----SSPCHIAVDPDGRFLYVANYG-------GGSVSVFP  115 (345)
T ss_dssp             TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS----SCEEEEEECTTSSEEEEEETT-------TTEEEEEE
T ss_pred             CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC----CCcEEEEEecCCCEEEEEEcc-------CCeEEEEE
Confidence            367788876432 344445566666666777665544211    11122333 234566665322       33677887


Q ss_pred             CCCC-ceeecC---------CC---cccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCC-
Q 040145          181 MQKN-RWTVMN---------KM---ITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGT-  242 (402)
Q Consensus       181 ~~t~-~W~~~~---------~~---~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~-  242 (402)
                      ...+ +-....         +-   ...-+.|.+...  +..+|+..--      ...+.+|+.....  ......... 
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------~D~v~~~~~~~~~~~l~~~~~~~~~  189 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------ADRVYVYDIDDDTGKLTPVDSIKVP  189 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------TTEEEEEEE-TTS-TEEEEEEEECS
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------CCEEEEEEEeCCCceEEEeeccccc
Confidence            7663 222211         11   112334555554  3467765321      5678888887655  544322211 


Q ss_pred             CCcce--eEEEECC-EEEEEcccccCCccCCcEEEEeCC--CCCeeeccc--cccCCC----ceeEEEE--CCE-EEEEe
Q 040145          243 NMASY--DAAVLDG-KLLVTEGWLWPFFVSPRGQVYDPS--TDNWESMAV--GLREGW----TGSSVVV--YEH-LFVVS  308 (402)
Q Consensus       243 ~~~~~--~~~~~~g-~ly~~gG~~~~~~~~~~~~~yd~~--~~~W~~~~~--~~~~~~----~~~~~~~--~~~-l~~~g  308 (402)
                      +..+.  ....-++ .+|++...      .+.+.+|+..  ++.++.+..  ..+...    ....+.+  +|+ ||+. 
T Consensus       190 ~G~GPRh~~f~pdg~~~Yv~~e~------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs-  262 (345)
T PF10282_consen  190 PGSGPRHLAFSPDGKYAYVVNEL------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS-  262 (345)
T ss_dssp             TTSSEEEEEE-TTSSEEEEEETT------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE-
T ss_pred             cCCCCcEEEEcCCcCEEEEecCC------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE-
Confidence            11222  2222244 67887654      2456666555  666665432  122221    1222333  454 6654 


Q ss_pred             ccCCcEEEEEeC--CCCceeecCCCCCCccccCCeEEEE--eCCEEEEEecCceeeeEEEEecccccc
Q 040145          309 ELERMKLKVYDP--STDSWETIEGPPLPEQICKPFAVNA--CDCRVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       309 g~~~~~~~~yd~--~~~~W~~~~~~~~p~~~~~~~~~~~--~~~~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                      ....+.|.+|+.  .+.+.+.+...+.  .......+.+  .++.|||.....+.  ..++..|+...
T Consensus       263 nr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~--v~vf~~d~~tG  326 (345)
T PF10282_consen  263 NRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNT--VSVFDIDPDTG  326 (345)
T ss_dssp             ECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTE--EEEEEEETTTT
T ss_pred             eccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCe--EEEEEEeCCCC
Confidence            333567777776  4556666553222  1122223333  45556665543333  44555565444

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=0.0064  Score=53.27  Aligned_cols=40  Identities=25%  Similarity=0.345  Sum_probs=37.1

Q ss_pred             CCCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCc
Q 040145           51 PFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNK   90 (402)
Q Consensus        51 ~~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~   90 (402)
                      ..|.+||||+++.|++.|+.+.+.++..|||||+.+....
T Consensus        96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de  135 (419)
T KOG2120|consen   96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE  135 (419)
T ss_pred             CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc
Confidence            3578999999999999999999999999999999998766

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.82  E-value=1.2  Score=39.02  Aligned_cols=185  Identities=15%  Similarity=0.163  Sum_probs=104.6

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF  199 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  199 (402)
                      -+.++|+++..-++.+ +|..  .........++...|.|+..|-..--        =++||.++.-+..+.. ..-...
T Consensus       125 aI~R~dpkt~evt~f~-lp~~--~a~~nlet~vfD~~G~lWFt~q~G~y--------GrLdPa~~~i~vfpaP-qG~gpy  192 (353)
T COG4257         125 AIGRLDPKTLEVTRFP-LPLE--HADANLETAVFDPWGNLWFTGQIGAY--------GRLDPARNVISVFPAP-QGGGPY  192 (353)
T ss_pred             eeEEecCcccceEEee-cccc--cCCCcccceeeCCCccEEEeeccccc--------eecCcccCceeeeccC-CCCCCc
Confidence            4567777776665543 2211  12255666777556788877643211        1678887765544322 222233


Q ss_pred             EE-EEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcce--eEEEECCEEEEEcccccCCccCCcEEEEe
Q 040145          200 AS-GVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASY--DAAVLDGKLLVTEGWLWPFFVSPRGQVYD  276 (402)
Q Consensus       200 ~~-~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~--~~~~~~g~ly~~gG~~~~~~~~~~~~~yd  276 (402)
                      ++ +.-++.+|+..=.      -+-+-..|+.+..=+.++.........  ..+--.|++.+.--      ....+..||
T Consensus       193 Gi~atpdGsvwyasla------gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittw------g~g~l~rfd  260 (353)
T COG4257         193 GICATPDGSVWYASLA------GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTW------GTGSLHRFD  260 (353)
T ss_pred             ceEECCCCcEEEEecc------ccceEEcccccCCcceecCCCcccccccccccCccCcEEEecc------CCceeeEeC
Confidence            33 4457888877432      234566777776544443222111111  11222466666521      123789999


Q ss_pred             CCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCceeecC
Q 040145          277 PSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       277 ~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~  329 (402)
                      +++..|.+-+-+-...+.... +--.|++++- ..+.+.+.+||+++.+.+.+.
T Consensus       261 Ps~~sW~eypLPgs~arpys~rVD~~grVW~s-ea~agai~rfdpeta~ftv~p  313 (353)
T COG4257         261 PSVTSWIEYPLPGSKARPYSMRVDRHGRVWLS-EADAGAIGRFDPETARFTVLP  313 (353)
T ss_pred             cccccceeeeCCCCCCCcceeeeccCCcEEee-ccccCceeecCcccceEEEec
Confidence            999999987753333343333 4445666653 334678999999999998875

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.80  E-value=0.77  Score=42.64  Aligned_cols=184  Identities=16%  Similarity=0.184  Sum_probs=89.6

Q ss_pred             eEEEEECCCCceeecCCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCC--CCcEEEcCCCCCCCcceeEE
Q 040145          175 LVLKYEMQKNRWTVMNKMITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPV--KGNWRTIASMGTNMASYDAA  250 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~--t~~W~~~~~~~~~~~~~~~~  250 (402)
                      .++.||..+++++.+......-...-++.  -++.||+.......   ...+..|+..  +++.+.+...+......+.+
T Consensus        16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~---~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i   92 (345)
T PF10282_consen   16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGD---SGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI   92 (345)
T ss_dssp             EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSST---TTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred             EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccC---CCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence            34456668888887664322211111222  35688888654301   3455555544  46788776665433333334


Q ss_pred             EE--CCEEEEEcccccCCccCCcEEEEeCCCC-Ceeeccc--------cc---cCCCceeEEEE--CCE-EEEEeccCCc
Q 040145          251 VL--DGKLLVTEGWLWPFFVSPRGQVYDPSTD-NWESMAV--------GL---REGWTGSSVVV--YEH-LFVVSELERM  313 (402)
Q Consensus       251 ~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~~~~~--------~~---~~~~~~~~~~~--~~~-l~~~gg~~~~  313 (402)
                      .+  +++..++..+.     ...+.+|++..+ .-.....        +-   ....+.+.+..  +++ +|+. ..+.+
T Consensus        93 ~~~~~g~~l~vany~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~-dlG~D  166 (345)
T PF10282_consen   93 AVDPDGRFLYVANYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP-DLGAD  166 (345)
T ss_dssp             EECTTSSEEEEEETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE-ETTTT
T ss_pred             EEecCCCEEEEEEcc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE-ecCCC
Confidence            44  45433333322     236778877663 2222210        01   11222233333  444 5544 44567


Q ss_pred             EEEEEeCCCCc--eeecCCCCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEeccc
Q 040145          314 KLKVYDPSTDS--WETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       314 ~~~~yd~~~~~--W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      .|++|+.+.+.  ........+|....-.|.+.. .+..+||+....+.  ..++.+++
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~--v~v~~~~~  223 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT--VSVFDYDP  223 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE--EEEEEEET
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc--EEEEeecc
Confidence            88888887665  655333334432121223333 34578888765444  34555553

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.74  E-value=2.2  Score=41.69  Aligned_cols=113  Identities=12%  Similarity=0.171  Sum_probs=63.5

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCcccc-----cceEEEEEC-CEEEEEcCCCCCCCCCCeeEEE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITAR-----SFFASGVIG-GMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r-----~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      ++.||+....        ..++.+|..|++  |+.-...+...     .....+..+ ++||+...       ...+..+
T Consensus        61 ~g~vy~~~~~--------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~Al  125 (488)
T cd00216          61 DGDMYFTTSH--------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLVAL  125 (488)
T ss_pred             CCEEEEeCCC--------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEEEE
Confidence            8889886532        378999999885  87633222100     111234445 78887543       3568999


Q ss_pred             cCCCCc--EEEcCCCCC-CC--cceeEEEECCEEEEEcccccCC---ccCCcEEEEeCCCC--Ceee
Q 040145          228 DPVKGN--WRTIASMGT-NM--ASYDAAVLDGKLLVTEGWLWPF---FVSPRGQVYDPSTD--NWES  284 (402)
Q Consensus       228 d~~t~~--W~~~~~~~~-~~--~~~~~~~~~g~ly~~gG~~~~~---~~~~~~~~yd~~~~--~W~~  284 (402)
                      |..|++  |+.-..... ..  ...+.++.++.+|+ |......   .....++++|.+++  .|+.
T Consensus       126 D~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~  191 (488)
T cd00216         126 DAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF  191 (488)
T ss_pred             ECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence            998775  876432221 11  11223455677665 3221110   11236899999876  4864

The alignment model contains an 8-bladed beta-propeller.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.66  E-value=1.6  Score=39.45  Aligned_cols=218  Identities=13%  Similarity=0.187  Sum_probs=91.6

Q ss_pred             CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC-CCcccccceEEEEE-C
Q 040145          128 HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN-KMITARSFFASGVI-G  205 (402)
Q Consensus       128 ~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~-~~~~~r~~~~~~~~-~  205 (402)
                      -.+|..+..-...+  ....+..+.. .++..|+.|..   +     -++.-.-.-.+|++++ +.+.+-..+.+..+ +
T Consensus        46 G~tW~~~~~~~~~~--~~~~l~~I~f-~~~~g~ivG~~---g-----~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~  114 (302)
T PF14870_consen   46 GKTWQPVSLDLDNP--FDYHLNSISF-DGNEGWIVGEP---G-----LLLHTTDGGKTWERVPLSSKLPGSPFGITALGD  114 (302)
T ss_dssp             TSS-EE-----S-------EEEEEEE-ETTEEEEEEET---T-----EEEEESSTTSS-EE----TT-SS-EEEEEEEET
T ss_pred             CccccccccCCCcc--ceeeEEEEEe-cCCceEEEcCC---c-----eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCC
Confidence            35698765322111  0123444444 36788888743   0     2222222344899976 22333334444444 5


Q ss_pred             CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE-EECCEEEEEcccccCCccCCcEEEEeCCCCCeee
Q 040145          206 GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA-VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES  284 (402)
Q Consensus       206 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~-~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~  284 (402)
                      +.+++++..       ..++.=.=.-.+|+.+..-... ...... .-+|++++++...      +-....|+....|+.
T Consensus       115 ~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~~vavs~~G------~~~~s~~~G~~~w~~  180 (302)
T PF14870_consen  115 GSAELAGDR-------GAIYRTTDGGKTWQAVVSETSG-SINDITRSSDGRYVAVSSRG------NFYSSWDPGQTTWQP  180 (302)
T ss_dssp             TEEEEEETT---------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTS------SEEEEE-TT-SS-EE
T ss_pred             CcEEEEcCC-------CcEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCcEEEEECcc------cEEEEecCCCccceE
Confidence            567777642       3344333344579887432221 111222 2367766666432      234577888889998


Q ss_pred             ccccccCCCceeEEEECCEEEEEeccCCcEEEEEe--CCCCceeecCCCCCCccccCC-eEEEE-eCCEEEEEecCceee
Q 040145          285 MAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYD--PSTDSWETIEGPPLPEQICKP-FAVNA-CDCRVYVVGRNLHVA  360 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd--~~~~~W~~~~~~~~p~~~~~~-~~~~~-~~~~i~v~GG~~~~~  360 (402)
                      .......+...+...-++.|++++-  +..+..=+  -...+|.+... +.... ... ..++. .++.+++.||...  
T Consensus       181 ~~r~~~~riq~~gf~~~~~lw~~~~--Gg~~~~s~~~~~~~~w~~~~~-~~~~~-~~~~ld~a~~~~~~~wa~gg~G~--  254 (302)
T PF14870_consen  181 HNRNSSRRIQSMGFSPDGNLWMLAR--GGQIQFSDDPDDGETWSEPII-PIKTN-GYGILDLAYRPPNEIWAVGGSGT--  254 (302)
T ss_dssp             EE--SSS-EEEEEE-TTS-EEEEET--TTEEEEEE-TTEEEEE---B--TTSS---S-EEEEEESSSS-EEEEESTT---
T ss_pred             EccCccceehhceecCCCCEEEEeC--CcEEEEccCCCCccccccccC-CcccC-ceeeEEEEecCCCCEEEEeCCcc--
Confidence            7753333222233445778888752  33555555  34567887331 23211 222 23333 4688999998643  


Q ss_pred             eEEEEecccccccCceeeeEEEEeC
Q 040145          361 VGHITRLSTSEKKWSFSVQWQVVDA  385 (402)
Q Consensus       361 ~~~v~~~~~~~~~~~~~~~W~~~~~  385 (402)
                         +++-...-+      +|++.+.
T Consensus       255 ---l~~S~DgGk------tW~~~~~  270 (302)
T PF14870_consen  255 ---LLVSTDGGK------TWQKDRV  270 (302)
T ss_dssp             ---EEEESSTTS------S-EE-GG
T ss_pred             ---EEEeCCCCc------cceECcc
Confidence               444333333      8888765

>PRK00178 tolB translocation protein TolB; Provisional

Probab=95.53  E-value=2.4  Score=40.66  Aligned_cols=183  Identities=10%  Similarity=0.004  Sum_probs=95.8

Q ss_pred             ceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145          118 KIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR  196 (402)
Q Consensus       118 ~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r  196 (402)
                      ...++++|..+++-..+...+..       ........++ .|++.....     ...+++++|..++..+.+..-....
T Consensus       222 ~~~l~~~~l~~g~~~~l~~~~g~-------~~~~~~SpDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~~~~  289 (430)
T PRK00178        222 RPRIFVQNLDTGRREQITNFEGL-------NGAPAWSPDGSKLAFVLSKD-----GNPEIYVMDLASRQLSRVTNHPAID  289 (430)
T ss_pred             CCEEEEEECCCCCEEEccCCCCC-------cCCeEECCCCCEEEEEEccC-----CCceEEEEECCCCCeEEcccCCCCc
Confidence            34688889888877776544311       1112222244 555443221     1248999999999887765432211


Q ss_pred             cceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECC-EEEEEcccccCCccCCcEEEE
Q 040145          197 SFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDG-KLLVTEGWLWPFFVSPRGQVY  275 (402)
Q Consensus       197 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g-~ly~~gG~~~~~~~~~~~~~y  275 (402)
                      .......-+..|++.....+    ...++.+|..++.++.+.... .........-+| .|++.....+    ...++.+
T Consensus       290 ~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~----~~~l~~~  360 (430)
T PRK00178        290 TEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG----NFHVAAQ  360 (430)
T ss_pred             CCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC----ceEEEEE
Confidence            11111112345666543222    357899999888887764211 111111222244 4555443221    2368999


Q ss_pred             eCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCC
Q 040145          276 DPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTD  323 (402)
Q Consensus       276 d~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~  323 (402)
                      |+.++..+.+... .. .......-+|+.+++....  ...++.++...+
T Consensus       361 dl~tg~~~~lt~~-~~-~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        361 DLQRGSVRILTDT-SL-DESPSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             ECCCCCEEEccCC-CC-CCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            9999888777542 11 1122334466766664432  235777777543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.41  E-value=2.6  Score=40.23  Aligned_cols=249  Identities=14%  Similarity=0.093  Sum_probs=124.0

Q ss_pred             CCeEEEEEEe-CCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC----CCCCceEEE
Q 040145          104 DPWLFVFAFH-KCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV----DCPLDLVLK  178 (402)
Q Consensus       104 ~~~l~~~gg~-~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~----~~~~~~~~~  178 (402)
                      ++..++++-+ .++....+.++|..+++...-. +.  .    ..+..+....++..++....+...    ...-..++.
T Consensus       134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~--~----~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IE--N----PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EE--E----EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-cc--c----cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            4455555433 3455667888999888553311 11  0    112224443454555444443221    112557888


Q ss_pred             EECCCCcee--ecCCCccccc-ceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCC-----cEEEcCCCCCCCcceeE
Q 040145          179 YEMQKNRWT--VMNKMITARS-FFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKG-----NWRTIASMGTNMASYDA  249 (402)
Q Consensus       179 ~d~~t~~W~--~~~~~~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~  249 (402)
                      +...|..-.  .+-.-+.... ...+.. -+++.+++.-.... . .+.++..|....     .|..+.+--. .....+
T Consensus       207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~-~-~s~v~~~d~~~~~~~~~~~~~l~~~~~-~~~~~v  283 (414)
T PF02897_consen  207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT-S-ESEVYLLDLDDGGSPDAKPKLLSPRED-GVEYYV  283 (414)
T ss_dssp             EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS-S-EEEEEEEECCCTTTSS-SEEEEEESSS-S-EEEE
T ss_pred             EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc-c-CCeEEEEeccccCCCcCCcEEEeCCCC-ceEEEE
Confidence            888877544  2222222222 222222 24443333221111 1 367899999875     7887743222 122233


Q ss_pred             EEECCEEEEEcccccCCccCCcEEEEeCCCCC---ee-eccccccCCCceeEEEECCEEEEEeccC-CcEEEEEeCC-CC
Q 040145          250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN---WE-SMAVGLREGWTGSSVVVYEHLFVVSELE-RMKLKVYDPS-TD  323 (402)
Q Consensus       250 ~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~---W~-~~~~~~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~yd~~-~~  323 (402)
                      ...++.+|+....+.+   ...+..+++.+..   |. .+.+.............+++|++..-.+ ...+.+||+. +.
T Consensus       284 ~~~~~~~yi~Tn~~a~---~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~  360 (414)
T PF02897_consen  284 DHHGDRLYILTNDDAP---NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK  360 (414)
T ss_dssp             EEETTEEEEEE-TT-T---T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred             EccCCEEEEeeCCCCC---CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence            3448899988764332   2378889988765   66 3333111112222346688888775443 4579999998 43


Q ss_pred             ceeecCCCCCCccccCCeEEEE---eCCEEEE-EecCceeeeEEEEecccccc
Q 040145          324 SWETIEGPPLPEQICKPFAVNA---CDCRVYV-VGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       324 ~W~~~~~~~~p~~~~~~~~~~~---~~~~i~v-~GG~~~~~~~~v~~~~~~~~  372 (402)
                      .-..+   ++|..  .......   ..+.+++ +.+...  -..++.||...+
T Consensus       361 ~~~~~---~~p~~--g~v~~~~~~~~~~~~~~~~ss~~~--P~~~y~~d~~t~  406 (414)
T PF02897_consen  361 ESREI---PLPEA--GSVSGVSGDFDSDELRFSYSSFTT--PPTVYRYDLATG  406 (414)
T ss_dssp             EEEEE---ESSSS--SEEEEEES-TT-SEEEEEEEETTE--EEEEEEEETTTT
T ss_pred             EEeee---cCCcc--eEEeccCCCCCCCEEEEEEeCCCC--CCEEEEEECCCC
Confidence            33333   35431  1111111   2344544 444433  368999998776

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.33  E-value=2.1  Score=40.18  Aligned_cols=174  Identities=12%  Similarity=0.122  Sum_probs=87.6

Q ss_pred             ceeEEEeecCCCcEEe-CCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc-eeecCCCccc
Q 040145          118 KIQWQVLDLTHYCWHT-IPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR-WTVMNKMITA  195 (402)
Q Consensus       118 ~~~~~~~d~~~~~W~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~-W~~~~~~~~~  195 (402)
                      ...+..|+..+..-.+ +..+.       ....++.+-.+|+++.+|+.       +..+.+||..+.. -+.+..-..|
T Consensus        47 S~rvqly~~~~~~~~k~~srFk-------~~v~s~~fR~DG~LlaaGD~-------sG~V~vfD~k~r~iLR~~~ah~ap  112 (487)
T KOG0310|consen   47 SVRVQLYSSVTRSVRKTFSRFK-------DVVYSVDFRSDGRLLAAGDE-------SGHVKVFDMKSRVILRQLYAHQAP  112 (487)
T ss_pred             ccEEEEEecchhhhhhhHHhhc-------cceeEEEeecCCeEEEccCC-------cCcEEEeccccHHHHHHHhhccCc
Confidence            3457788877654332 22222       22334444458999999986       3379999954421 1111111111


Q ss_pred             ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcce---eEEEECCEEEEEcccccCCccCCcE
Q 040145          196 RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASY---DAAVLDGKLLVTEGWLWPFFVSPRG  272 (402)
Q Consensus       196 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~---~~~~~~g~ly~~gG~~~~~~~~~~~  272 (402)
                      -..--....++.+++.|+-+      ..+..+|..+..-  ...+...-.+.   +....+++|++.||+++      .+
T Consensus       113 v~~~~f~~~d~t~l~s~sDd------~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg------~v  178 (487)
T KOG0310|consen  113 VHVTKFSPQDNTMLVSGSDD------KVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDG------KV  178 (487)
T ss_pred             eeEEEecccCCeEEEecCCC------ceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCc------eE
Confidence            11122234577888888742      2334445544431  22222222211   12234788999999864      67


Q ss_pred             EEEeCCCCCeeeccc-cccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCC
Q 040145          273 QVYDPSTDNWESMAV-GLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       273 ~~yd~~~~~W~~~~~-~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      -.||..+.+ ..+-. ....+ ....+.+ +|.+++..|  ++.+.++|..+.
T Consensus       179 rl~DtR~~~-~~v~elnhg~p-Ve~vl~lpsgs~iasAg--Gn~vkVWDl~~G  227 (487)
T KOG0310|consen  179 RLWDTRSLT-SRVVELNHGCP-VESVLALPSGSLIASAG--GNSVKVWDLTTG  227 (487)
T ss_pred             EEEEeccCC-ceeEEecCCCc-eeeEEEcCCCCEEEEcC--CCeEEEEEecCC
Confidence            889987763 22221 11111 1112333 445554444  447888777643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.29  E-value=3  Score=40.29  Aligned_cols=183  Identities=9%  Similarity=-0.007  Sum_probs=93.6

Q ss_pred             ceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145          118 KIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR  196 (402)
Q Consensus       118 ~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r  196 (402)
                      ..+++.+|..+++-..+...+..      .. ......++ .|++....+     ...+++++|..+++.+++..-....
T Consensus       241 ~~~L~~~dl~tg~~~~lt~~~g~------~~-~~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~tg~~~~lt~~~~~~  308 (448)
T PRK04792        241 KAEIFVQDIYTQVREKVTSFPGI------NG-APRFSPDGKKLALVLSKD-----GQPEIYVVDIATKALTRITRHRAID  308 (448)
T ss_pred             CcEEEEEECCCCCeEEecCCCCC------cC-CeeECCCCCEEEEEEeCC-----CCeEEEEEECCCCCeEECccCCCCc
Confidence            35688889888776666544311      11 12222244 565554321     2358999999999888765432111


Q ss_pred             cceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEe
Q 040145          197 SFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYD  276 (402)
Q Consensus       197 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd  276 (402)
                      .......-+..|++.....+    ...++.+|..+++++.+.. ...........-+|+.+++.+....   ...++.+|
T Consensus       309 ~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g---~~~I~~~d  380 (448)
T PRK04792        309 TEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTF-EGEQNLGGSITPDGRSMIMVNRTNG---KFNIARQD  380 (448)
T ss_pred             cceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEec-CCCCCcCeeECCCCCEEEEEEecCC---ceEEEEEE
Confidence            11111112335555543222    3578999999998887641 1111111122235544333332211   23688999


Q ss_pred             CCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCC
Q 040145          277 PSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPST  322 (402)
Q Consensus       277 ~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~  322 (402)
                      +.++....+.... .. ......-+|+.+++....  ...++.+|.+.
T Consensus       381 l~~g~~~~lt~~~-~d-~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G  426 (448)
T PRK04792        381 LETGAMQVLTSTR-LD-ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG  426 (448)
T ss_pred             CCCCCeEEccCCC-CC-CCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            9998877665421 11 122333455544443222  23577777743

>PRK05137 tolB translocation protein TolB; Provisional

Probab=95.18  E-value=3.2  Score=39.94  Aligned_cols=146  Identities=10%  Similarity=0.069  Sum_probs=77.8

Q ss_pred             ceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEEC
Q 040145          174 DLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLD  253 (402)
Q Consensus       174 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~  253 (402)
                      ..++++|..+++.+.+...+..........-+.+|++....++    ...++++|..++.-+.+...+... ......-+
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~~-~~~~~spD  300 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAID-TSPSYSPD  300 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCcc-CceeEcCC
Confidence            5899999999988777654432222222222335555443322    457899999988877664433211 11122235


Q ss_pred             CE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEecc--CCcEEEEEeCCCCceeecC
Q 040145          254 GK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSEL--ERMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       254 g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~--~~~~~~~yd~~~~~W~~~~  329 (402)
                      |+ |++.....+    ...++.+|..++..+.+... ..........-+|+.+++...  +...++.+|+.+.....+.
T Consensus       301 G~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt  374 (435)
T PRK05137        301 GSQIVFESDRSG----SPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT  374 (435)
T ss_pred             CCEEEEEECCCC----CCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc
Confidence            54 444332211    24789999888777766531 111112222334544433222  1357899998776655554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.13  E-value=0.76  Score=42.98  Aligned_cols=137  Identities=15%  Similarity=0.124  Sum_probs=73.0

Q ss_pred             eEEEEECCCCceee-cCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcCCCCCCCcceeEEE
Q 040145          175 LVLKYEMQKNRWTV-MNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIASMGTNMASYDAAV  251 (402)
Q Consensus       175 ~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~~~~~~  251 (402)
                      .+.+|+..+..-.+ +..  ..+..+++.+ .+|+++++|+.      ..-+.+||..+.. -+.+..-..+.....-..
T Consensus        49 rvqly~~~~~~~~k~~sr--Fk~~v~s~~fR~DG~LlaaGD~------sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~  120 (487)
T KOG0310|consen   49 RVQLYSSVTRSVRKTFSR--FKDVVYSVDFRSDGRLLAAGDE------SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSP  120 (487)
T ss_pred             EEEEEecchhhhhhhHHh--hccceeEEEeecCCeEEEccCC------cCcEEEeccccHHHHHHHhhccCceeEEEecc
Confidence            67788877653222 111  1233344444 47999999986      5568899955521 011111111111111223


Q ss_pred             ECCEEEEEcccccCCccCCcEEEEeCCCCCee-eccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCC-cee
Q 040145          252 LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD-SWE  326 (402)
Q Consensus       252 ~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~-~W~  326 (402)
                      .++.+++.|+-+      ..+..+|..+..-. ++.....--|.+...-.+++|++.||++ ..|..||..+. .|.
T Consensus       121 ~d~t~l~s~sDd------~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD-g~vrl~DtR~~~~~v  190 (487)
T KOG0310|consen  121 QDNTMLVSGSDD------KVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD-GKVRLWDTRSLTSRV  190 (487)
T ss_pred             cCCeEEEecCCC------ceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCC-ceEEEEEeccCCcee
Confidence            478888888753      13444555554421 1111111223333345689999999995 47888999877 444

>PRK03629 tolB translocation protein TolB; Provisional

Probab=95.13  E-value=3.3  Score=39.79  Aligned_cols=170  Identities=10%  Similarity=-0.004  Sum_probs=88.0

Q ss_pred             CceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145          173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL  252 (402)
Q Consensus       173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~  252 (402)
                      ...++++|..+++-+.+...+..-.......-+.+|++.....+    ...++++|..++..+.+....... ......-
T Consensus       222 ~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~~-~~~~wSP  296 (429)
T PRK03629        222 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSNN-TEPTWFP  296 (429)
T ss_pred             CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCCc-CceEECC
Confidence            34799999988876666544322111111112335665543222    346899999988877764332211 1111222


Q ss_pred             CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCCceeecC
Q 040145          253 DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       253 ~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~~W~~~~  329 (402)
                      +|+ |++.....+    ...++.+|+.++.-..+... ..........-+|+.+++.+..  ...++.+|++++.+..+.
T Consensus       297 DG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt  371 (429)
T PRK03629        297 DSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT  371 (429)
T ss_pred             CCCEEEEEeCCCC----CceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC
Confidence            555 444332211    23688889888766655431 1111112223355544443322  357899999999888776


Q ss_pred             CCCCCccccCCeEEEEeCCEEEEEecCc
Q 040145          330 GPPLPEQICKPFAVNACDCRVYVVGRNL  357 (402)
Q Consensus       330 ~~~~p~~~~~~~~~~~~~~~i~v~GG~~  357 (402)
                      ..  .   .........+|+.+++.+..
T Consensus       372 ~~--~---~~~~p~~SpDG~~i~~~s~~  394 (429)
T PRK03629        372 DT--F---LDETPSIAPNGTMVIYSSSQ  394 (429)
T ss_pred             CC--C---CCCCceECCCCCEEEEEEcC
Confidence            31  1   11122334677766665543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.01  E-value=3.6  Score=39.59  Aligned_cols=181  Identities=13%  Similarity=-0.006  Sum_probs=92.4

Q ss_pred             CceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145          173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL  252 (402)
Q Consensus       173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~  252 (402)
                      ...++++|..+++-+.+...+..........-+.+|++....++    ...++++|..++.-+.+..-..... .....-
T Consensus       227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~sp  301 (433)
T PRK04922        227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGIDT-EPTWAP  301 (433)
T ss_pred             CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCCcc-ceEECC
Confidence            45799999999887776554322111111112345655433222    3578999999887766543221111 112222


Q ss_pred             CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCE-EEEEeccC-CcEEEEEeCCCCceeecC
Q 040145          253 DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEH-LFVVSELE-RMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       253 ~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-l~~~gg~~-~~~~~~yd~~~~~W~~~~  329 (402)
                      +|+ |++.....+    ...++.+|..+++.+.+... ..........-+|+ |++..+.+ ...++++|+.+...+.+.
T Consensus       302 DG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt  376 (433)
T PRK04922        302 DGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT  376 (433)
T ss_pred             CCCEEEEEECCCC----CceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC
Confidence            554 444432221    23688999988887776531 11111122233444 44443322 347999999888877665


Q ss_pred             CCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145          330 GPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       330 ~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      .  -..  .. .-....+|+.+++.... .....++.++.
T Consensus       377 ~--~~~--~~-~p~~spdG~~i~~~s~~-~g~~~L~~~~~  410 (433)
T PRK04922        377 P--GSL--DE-SPSFAPNGSMVLYATRE-GGRGVLAAVST  410 (433)
T ss_pred             C--CCC--CC-CceECCCCCEEEEEEec-CCceEEEEEEC
Confidence            2  111  11 12334466655544432 22345666665

>PRK00178 tolB translocation protein TolB; Provisional

Probab=94.84  E-value=3.9  Score=39.21  Aligned_cols=181  Identities=10%  Similarity=0.008  Sum_probs=92.6

Q ss_pred             CceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145          173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL  252 (402)
Q Consensus       173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~  252 (402)
                      ...++++|..+++-+.+......-.......-+.+|++....++    ...+++||..++..+.+...+..-.. ....-
T Consensus       222 ~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~~~~-~~~sp  296 (430)
T PRK00178        222 RPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAIDTE-PFWGK  296 (430)
T ss_pred             CCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCCcCC-eEECC
Confidence            34799999999887776544321111111111345554432222    35789999999988776543221111 11222


Q ss_pred             CC-EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECC-EEEEEeccC-CcEEEEEeCCCCceeecC
Q 040145          253 DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVVSELE-RMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       253 ~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~~-~~~~~~yd~~~~~W~~~~  329 (402)
                      +| .|++.....+    ...++.+|+.+++++.+... ..........-+| .|++....+ ...++.+|..+...+.+.
T Consensus       297 Dg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt  371 (430)
T PRK00178        297 DGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT  371 (430)
T ss_pred             CCCEEEEEECCCC----CceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc
Confidence            44 4655532221    23789999988888776531 1111111222244 444443222 347999999998887775


Q ss_pred             CCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145          330 GPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       330 ~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      .....     .......+|+.+++..... ....++..+.
T Consensus       372 ~~~~~-----~~p~~spdg~~i~~~~~~~-g~~~l~~~~~  405 (430)
T PRK00178        372 DTSLD-----ESPSVAPNGTMLIYATRQQ-GRGVLMLVSI  405 (430)
T ss_pred             CCCCC-----CCceECCCCCEEEEEEecC-CceEEEEEEC
Confidence            32111     1123344666555543221 1233555543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=94.79  E-value=1.5  Score=40.18  Aligned_cols=152  Identities=16%  Similarity=0.207  Sum_probs=88.1

Q ss_pred             CEEEEEeCccCCCCC--CC-ceEEEEECCCC-----ceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEc
Q 040145          157 GTLFVCGGMVSDVDC--PL-DLVLKYEMQKN-----RWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLD  228 (402)
Q Consensus       157 ~~i~v~GG~~~~~~~--~~-~~~~~~d~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd  228 (402)
                      ...+++|-....++.  .. ..+++|+....     +.+.+.....+-.-.+++.++++|.+..|        +.+.+|+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~  113 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYD  113 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEE
Confidence            456666644322211  23 77999999885     55555554455556677778999666665        4688888


Q ss_pred             CCCCc-EEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-CCEEEE
Q 040145          229 PVKGN-WRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-YEHLFV  306 (402)
Q Consensus       229 ~~t~~-W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~  306 (402)
                      ...+. +...+.+..+-......++++.|++---..     .-.++.|+.+..+-..++......+..++..+ ++..++
T Consensus       114 l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~-----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i  188 (321)
T PF03178_consen  114 LDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK-----SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTII  188 (321)
T ss_dssp             EETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS-----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEE
T ss_pred             ccCcccchhhheecceEEEEEEeccccEEEEEEccc-----CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEE
Confidence            88887 888877766666666777788766543221     12456778866677777653433333334455 665444


Q ss_pred             EeccCC-cEEEEEeCC
Q 040145          307 VSELER-MKLKVYDPS  321 (402)
Q Consensus       307 ~gg~~~-~~~~~yd~~  321 (402)
                      ++...+ -.++.|++.
T Consensus       189 ~~D~~gnl~~l~~~~~  204 (321)
T PF03178_consen  189 VGDKDGNLFVLRYNPE  204 (321)
T ss_dssp             EEETTSEEEEEEE-SS
T ss_pred             EEcCCCeEEEEEECCC
Confidence            443322 245666653

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=94.79  E-value=2.5  Score=36.75  Aligned_cols=145  Identities=12%  Similarity=0.131  Sum_probs=68.6

Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc-cceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR-SFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKG  232 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~  232 (402)
                      .++..+++++.       ...+.+||..++....  .+.... ....+... ++.+++.++.      ...+.+||..+.
T Consensus        61 ~~~~~l~~~~~-------~~~i~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~  125 (289)
T cd00200          61 ADGTYLASGSS-------DKTIRLWDLETGECVR--TLTGHTSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETG  125 (289)
T ss_pred             CCCCEEEEEcC-------CCeEEEEEcCcccceE--EEeccCCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCc
Confidence            34556666664       2378899998753211  111111 11222222 3466666653      356888998855


Q ss_pred             cEEEcCCCCCCCcceeEE-EE-CCEEEEEcccccCCccCCcEEEEeCCCCCe-eeccccccCCCceeEEEECCEEEEEec
Q 040145          233 NWRTIASMGTNMASYDAA-VL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVGLREGWTGSSVVVYEHLFVVSE  309 (402)
Q Consensus       233 ~W~~~~~~~~~~~~~~~~-~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~l~~~gg  309 (402)
                      .-...  +.......... .. ++.+++.+..+      ..+..||..+.+- ..+.. ...........-++..+++++
T Consensus       126 ~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~  196 (289)
T cd00200         126 KCLTT--LRGHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSS  196 (289)
T ss_pred             EEEEE--eccCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccccccceeEec-CccccceEEECCCcCEEEEec
Confidence            42221  11111112222 22 34555555422      3688899875432 11211 111111111222444555555


Q ss_pred             cCCcEEEEEeCCCCc
Q 040145          310 LERMKLKVYDPSTDS  324 (402)
Q Consensus       310 ~~~~~~~~yd~~~~~  324 (402)
                      . ...+.+||..+..
T Consensus       197 ~-~~~i~i~d~~~~~  210 (289)
T cd00200         197 S-DGTIKLWDLSTGK  210 (289)
T ss_pred             C-CCcEEEEECCCCc
Confidence            4 5679999997643

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.69  E-value=2.4  Score=36.15  Aligned_cols=145  Identities=12%  Similarity=0.060  Sum_probs=89.0

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECC--EEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGG--MIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      ++.=|..||.+       ..+++||..|++--+-  +...-..-..+.+++  .+.+.|+.      -.++.++|-.+++
T Consensus        70 Dnskf~s~GgD-------k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~Sgsf------D~s~r~wDCRS~s  134 (307)
T KOG0316|consen   70 DNSKFASCGGD-------KAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSF------DSSVRLWDCRSRS  134 (307)
T ss_pred             cccccccCCCC-------ceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEeccc------cceeEEEEcccCC
Confidence            55555555542       2799999999863221  111111122333443  56667776      4568889999988


Q ss_pred             EEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCc
Q 040145          234 WRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERM  313 (402)
Q Consensus       234 W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~  313 (402)
                      -+.+.-+...+.+..++.+.+...+.|..++      .+-.||+..++-.  ...+..+-......-++...++|.. ..
T Consensus       135 ~ePiQildea~D~V~Si~v~~heIvaGS~DG------tvRtydiR~G~l~--sDy~g~pit~vs~s~d~nc~La~~l-~s  205 (307)
T KOG0316|consen  135 FEPIQILDEAKDGVSSIDVAEHEIVAGSVDG------TVRTYDIRKGTLS--SDYFGHPITSVSFSKDGNCSLASSL-DS  205 (307)
T ss_pred             CCccchhhhhcCceeEEEecccEEEeeccCC------cEEEEEeecceee--hhhcCCcceeEEecCCCCEEEEeec-cc
Confidence            8888888888888889989998888777643      5778998776521  1222222222222335555555544 44


Q ss_pred             EEEEEeCCCCc
Q 040145          314 KLKVYDPSTDS  324 (402)
Q Consensus       314 ~~~~yd~~~~~  324 (402)
                      .+..+|.++.+
T Consensus       206 tlrLlDk~tGk  216 (307)
T KOG0316|consen  206 TLRLLDKETGK  216 (307)
T ss_pred             eeeecccchhH
Confidence            67777887764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=94.63  E-value=7.9  Score=41.78  Aligned_cols=156  Identities=15%  Similarity=0.182  Sum_probs=86.6

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC----------c---ccccceEEEEE--CCEEEEEcC
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM----------I---TARSFFASGVI--GGMIYVAGG  213 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~----------~---~~r~~~~~~~~--~~~iyv~GG  213 (402)
                      +.+....++.||+....       .+.+++||+.++.......-          .   .-....++++.  ++.||+...
T Consensus       687 gVa~dp~~g~LyVad~~-------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs  759 (1057)
T PLN02919        687 DVCFEPVNEKVYIAMAG-------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS  759 (1057)
T ss_pred             EEEEecCCCeEEEEECC-------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC
Confidence            33333236789987543       34799999988765432110          0   00112233333  345898865


Q ss_pred             CCCCCCCCCeeEEEcCCCCcEEEcC--C--CCCC---------------CcceeEEE--ECCEEEEEcccccCCccCCcE
Q 040145          214 SSADLFELDSAEVLDPVKGNWRTIA--S--MGTN---------------MASYDAAV--LDGKLLVTEGWLWPFFVSPRG  272 (402)
Q Consensus       214 ~~~~~~~~~~~~~yd~~t~~W~~~~--~--~~~~---------------~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~  272 (402)
                      .      .+.+.+||+.++..+.+.  .  .+..               ......+.  -+|.||+....      .+.+
T Consensus       760 ~------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rI  827 (1057)
T PLN02919        760 E------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKI  827 (1057)
T ss_pred             C------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEE
Confidence            4      567899999876533221  0  0000               01112222  36789987654      2479


Q ss_pred             EEEeCCCCCeeeccccc----------cCCC---ceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          273 QVYDPSTDNWESMAVGL----------REGW---TGSSVVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       273 ~~yd~~~~~W~~~~~~~----------~~~~---~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      .+||+.++....+...-          ....   .+.++.-+|++|+.... .+.|.++|..+.+
T Consensus       828 rviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~-Nn~Irvid~~~~~  891 (1057)
T PLN02919        828 KKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN-NSLIRYLDLNKGE  891 (1057)
T ss_pred             EEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC-CCEEEEEECCCCc
Confidence            99999888776553200          0001   11122347889887554 6789999998865

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=94.60  E-value=3.6  Score=37.76  Aligned_cols=258  Identities=8%  Similarity=0.029  Sum_probs=110.3

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecC-CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLT-HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~-~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      +..||+....    ...+..|+.. ..++..+...+.+.    .....+....+..+|+....       .+.+.+||..
T Consensus        46 ~~~lyv~~~~----~~~i~~~~~~~~g~l~~~~~~~~~~----~p~~i~~~~~g~~l~v~~~~-------~~~v~v~~~~  110 (330)
T PRK11028         46 KRHLYVGVRP----EFRVLSYRIADDGALTFAAESPLPG----SPTHISTDHQGRFLFSASYN-------ANCVSVSPLD  110 (330)
T ss_pred             CCEEEEEECC----CCcEEEEEECCCCceEEeeeecCCC----CceEEEECCCCCEEEEEEcC-------CCeEEEEEEC
Confidence            5567775432    1235556554 44565444333211    11222322224456665422       3478888876


Q ss_pred             CCc--eeecCCCcccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcC----CCCCCCcceeEEEE-
Q 040145          183 KNR--WTVMNKMITARSFFASGVI-G-GMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIA----SMGTNMASYDAAVL-  252 (402)
Q Consensus       183 t~~--W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~----~~~~~~~~~~~~~~-  252 (402)
                      ++.  .+.+..++.....|.++.. + ..+|+..-.      .+.+.+||..++. .....    ..+....-...+.. 
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p  184 (330)
T PRK11028        111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP  184 (330)
T ss_pred             CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC
Confidence            431  1222222222233444443 3 366665532      4678999987632 21100    11111111122222 


Q ss_pred             CC-EEEEEcccccCCccCCcEEEEeCC--CCCeeeccc--ccc----CCCceeEEE--ECCE-EEEEeccCCcEEEEEeC
Q 040145          253 DG-KLLVTEGWLWPFFVSPRGQVYDPS--TDNWESMAV--GLR----EGWTGSSVV--VYEH-LFVVSELERMKLKVYDP  320 (402)
Q Consensus       253 ~g-~ly~~gG~~~~~~~~~~~~~yd~~--~~~W~~~~~--~~~----~~~~~~~~~--~~~~-l~~~gg~~~~~~~~yd~  320 (402)
                      +| .+|+....      .+.+.+||..  +++.+.+..  ..|    ..+....+.  -+++ +|+. ....+.+.+|+.
T Consensus       185 dg~~lyv~~~~------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-~~~~~~I~v~~i  257 (330)
T PRK11028        185 NQQYAYCVNEL------NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-DRTASLISVFSV  257 (330)
T ss_pred             CCCEEEEEecC------CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe-cCCCCeEEEEEE
Confidence            44 46665432      2467777775  445543321  111    122222222  2444 6654 333456666665


Q ss_pred             --CCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeCCCCCCCcccccee
Q 040145          321 --STDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQ  398 (402)
Q Consensus       321 --~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  398 (402)
                        ++..++.+...+.... .....+...+..||+.....+  ...++..|....      .++.+..-.  .+..|.+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~-p~~~~~~~dg~~l~va~~~~~--~v~v~~~~~~~g------~l~~~~~~~--~g~~P~~~~  326 (330)
T PRK11028        258 SEDGSVLSFEGHQPTETQ-PRGFNIDHSGKYLIAAGQKSH--HISVYEIDGETG------LLTELGRYA--VGQGPMWVS  326 (330)
T ss_pred             eCCCCeEEEeEEEecccc-CCceEECCCCCEEEEEEccCC--cEEEEEEcCCCC------cEEEccccc--cCCCceEEE
Confidence              3445555543222111 112222233446666554332  234444443332      333443211  244566666


Q ss_pred             EE
Q 040145          399 VL  400 (402)
Q Consensus       399 ~~  400 (402)
                      +|
T Consensus       327 ~~  328 (330)
T PRK11028        327 VL  328 (330)
T ss_pred             EE
Confidence            54

>PRK13684 Ycf48-like protein; Provisional

Probab=94.58  E-value=3.8  Score=37.86  Aligned_cols=169  Identities=12%  Similarity=0.151  Sum_probs=83.5

Q ss_pred             eEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEE-EcCCCCcEEEcCCCCCCCcceeEEE-E
Q 040145          175 LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEV-LDPVKGNWRTIASMGTNMASYDAAV-L  252 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-yd~~t~~W~~~~~~~~~~~~~~~~~-~  252 (402)
                      .+++=+-.-.+|+.+...... ..+.+....+..|++.|..+      .++. .|....+|+.+.. +..+.....+. -
T Consensus       153 ~i~~S~DgG~tW~~~~~~~~g-~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~  224 (334)
T PRK13684        153 AIYRTTDGGKNWEALVEDAAG-VVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQP  224 (334)
T ss_pred             eEEEECCCCCCceeCcCCCcc-eEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeC-CCcccceeeeEcC
Confidence            344444444589987643322 23344444444444444321      2222 2444467988754 33333333333 3


Q ss_pred             CCEEEEEcccccCCccCCcEEEEe--CCCCCeeeccccccCCCce-eEE--EECCEEEEEeccCCcEEEEEeCCCCceee
Q 040145          253 DGKLLVTEGWLWPFFVSPRGQVYD--PSTDNWESMAVGLREGWTG-SSV--VVYEHLFVVSELERMKLKVYDPSTDSWET  327 (402)
Q Consensus       253 ~g~ly~~gG~~~~~~~~~~~~~yd--~~~~~W~~~~~~~~~~~~~-~~~--~~~~~l~~~gg~~~~~~~~yd~~~~~W~~  327 (402)
                      ++.++++|..        ....+.  -.-.+|+.+..+....... ..+  .-++.++++|.. + .++.-.....+|+.
T Consensus       225 ~g~~~~vg~~--------G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~-G-~v~~S~d~G~tW~~  294 (334)
T PRK13684        225 DGNLWMLARG--------GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN-G-TLLVSKDGGKTWEK  294 (334)
T ss_pred             CCCEEEEecC--------CEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC-C-eEEEeCCCCCCCeE
Confidence            6788887653        223342  2335899765422211111 222  226788887664 2 34433444578999


Q ss_pred             cCC-CCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEeccc
Q 040145          328 IEG-PPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       328 ~~~-~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      +.. ..++   .....++ ..++++|++|..     +.+..+++
T Consensus       295 ~~~~~~~~---~~~~~~~~~~~~~~~~~G~~-----G~il~~~~  330 (334)
T PRK13684        295 DPVGEEVP---SNFYKIVFLDPEKGFVLGQR-----GVLLRYVG  330 (334)
T ss_pred             CCcCCCCC---cceEEEEEeCCCceEEECCC-----ceEEEecC
Confidence            752 1233   2233444 457788888763     33555544

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=94.57  E-value=0.52  Score=36.70  Aligned_cols=71  Identities=13%  Similarity=0.076  Sum_probs=52.1

Q ss_pred             EEECCEEEEEecc---CCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee--eeEEEEecc
Q 040145          298 VVVYEHLFVVSEL---ERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV--AVGHITRLS  368 (402)
Q Consensus       298 ~~~~~~l~~~gg~---~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~--~~~~v~~~~  368 (402)
                      +.+||.+|-.+..   ....|..||..+.+|+.+.....+........++.++|+|.++.-....  ..-++|+++
T Consensus         2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe   77 (129)
T PF08268_consen    2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE   77 (129)
T ss_pred             EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEee
Confidence            4689999988664   2578999999999999987310123334556788899999998765533  468899996

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=94.53  E-value=2.9  Score=36.33  Aligned_cols=174  Identities=12%  Similarity=0.139  Sum_probs=78.4

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceee-cCCCcccccceEEEEEC-CEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNKMITARSFFASGVIG-GMIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      ++.+++.++.       ...+.+||..+++-.. +..  ....-..+.... +.+++.|+.      ...+.+||..+..
T Consensus       104 ~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~  168 (289)
T cd00200         104 DGRILSSSSR-------DKTIKVWDVETGKCLTTLRG--HTDWVNSVAFSPDGTFVASSSQ------DGTIKLWDLRTGK  168 (289)
T ss_pred             CCCEEEEecC-------CCeEEEEECCCcEEEEEecc--CCCcEEEEEEcCcCCEEEEEcC------CCcEEEEEccccc
Confidence            4566666653       2378899998654222 221  111122233333 455554442      3457889887543


Q ss_pred             EEEcCCCCCCCcceeEE-EE-CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-CCEEEEEecc
Q 040145          234 WRTIASMGTNMASYDAA-VL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-YEHLFVVSEL  310 (402)
Q Consensus       234 W~~~~~~~~~~~~~~~~-~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~  310 (402)
                      -  +..+.......... .. ++..+++++.+      ..+..||..+.+-...-..... .....+.. ++.+++.++ 
T Consensus       169 ~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~-  238 (289)
T cd00200         169 C--VATLTGHTGEVNSVAFSPDGEKLLSSSSD------GTIKLWDLSTGKCLGTLRGHEN-GVNSVAFSPDGYLLASGS-  238 (289)
T ss_pred             c--ceeEecCccccceEEECCCcCEEEEecCC------CcEEEEECCCCceecchhhcCC-ceEEEEEcCCCcEEEEEc-
Confidence            1  11111111111122 22 44455555532      3688999876443222111111 11111222 345555544 


Q ss_pred             CCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEe-CCEEEEEecCce
Q 040145          311 ERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC-DCRVYVVGRNLH  358 (402)
Q Consensus       311 ~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~-~~~i~v~GG~~~  358 (402)
                      ....+..||..+..  .+..  ++.......++... ++.+++.++.++
T Consensus       239 ~~~~i~i~~~~~~~--~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~  283 (289)
T cd00200         239 EDGTIRVWDLRTGE--CVQT--LSGHTNSVTSLAWSPDGKRLASGSADG  283 (289)
T ss_pred             CCCcEEEEEcCCce--eEEE--ccccCCcEEEEEECCCCCEEEEecCCC
Confidence            35578899987543  2221  11111112233333 446777777544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.51  E-value=1.3  Score=38.76  Aligned_cols=109  Identities=19%  Similarity=0.176  Sum_probs=71.9

Q ss_pred             EEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCC
Q 040145          200 ASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPS  278 (402)
Q Consensus       200 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~  278 (402)
                      +... .++.+|.--|.-+    .+.+..||+.|++-....++|..-++-+.+.++++||.+-=.      ....++||..
T Consensus        49 GL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~  118 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK------EGTGFVYDPN  118 (264)
T ss_dssp             EEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS------SSEEEEEETT
T ss_pred             cEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec------CCeEEEEccc
Confidence            4555 5788988877644    577999999999877777788888888999999999998543      3478999997


Q ss_pred             CCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCC
Q 040145          279 TDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       279 ~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      +  .+.+.. .+-...+-. +.-+.+|++-.|  +..++.+||++-
T Consensus       119 t--l~~~~~-~~y~~EGWGLt~dg~~Li~SDG--S~~L~~~dP~~f  159 (264)
T PF05096_consen  119 T--LKKIGT-FPYPGEGWGLTSDGKRLIMSDG--SSRLYFLDPETF  159 (264)
T ss_dssp             T--TEEEEE-EE-SSS--EEEECSSCEEEE-S--SSEEEEE-TTT-
T ss_pred             c--ceEEEE-EecCCcceEEEcCCCEEEEECC--ccceEEECCccc
Confidence            5  444443 222223334 344566666666  458999999863

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=94.38  E-value=5.1  Score=38.54  Aligned_cols=188  Identities=13%  Similarity=0.037  Sum_probs=95.1

Q ss_pred             eeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145          119 IQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS  197 (402)
Q Consensus       119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~  197 (402)
                      ..++++|+.++....+...+...      . ......+| .|++....+     ...+++++|..++..+++..-+....
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g~~------~-~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~Lt~~~~~~~  293 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPGMT------F-APRFSPDGRKVVMSLSQG-----GNTDIYTMDLRSGTTTRLTDSPAIDT  293 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCCcc------c-CcEECCCCCEEEEEEecC-----CCceEEEEECCCCceEEccCCCCccC
Confidence            56888898888777665444211      1 11222244 455443321     23589999999988777654332111


Q ss_pred             ceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCE-EEEEcccccCCccCCcEEEEe
Q 040145          198 FFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGK-LLVTEGWLWPFFVSPRGQVYD  276 (402)
Q Consensus       198 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~-ly~~gG~~~~~~~~~~~~~yd  276 (402)
                      ......-+..|++.....+    ...++++|..++..+.+..... ........-+|+ |++..... .   ...++.+|
T Consensus       294 ~~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~~~-~~~~~~~SpdG~~ia~~~~~~-~---~~~i~~~d  364 (435)
T PRK05137        294 SPSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISFGGG-RYSTPVWSPRGDLIAFTKQGG-G---QFSIGVMK  364 (435)
T ss_pred             ceeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeecCCC-cccCeEECCCCCEEEEEEcCC-C---ceEEEEEE
Confidence            1111112334554432221    3578999988877766643211 111112223554 44433211 1   13688899


Q ss_pred             CCCCCeeeccccccCCCceeEEEECCEEEEEeccC--C---cEEEEEeCCCCceeecC
Q 040145          277 PSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--R---MKLKVYDPSTDSWETIE  329 (402)
Q Consensus       277 ~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~---~~~~~yd~~~~~W~~~~  329 (402)
                      +.++....+....  ........-+|+.+++....  .   ..++.+|.....-..+.
T Consensus       365 ~~~~~~~~lt~~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~  420 (435)
T PRK05137        365 PDGSGERILTSGF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP  420 (435)
T ss_pred             CCCCceEeccCCC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence            8776655554311  11222233356655453321  1   47888888776555543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=94.36  E-value=5  Score=38.36  Aligned_cols=176  Identities=12%  Similarity=0.085  Sum_probs=95.1

Q ss_pred             ceEEEEECCCCceeecCCCcccccceEEEEECC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145          174 DLVLKYEMQKNRWTVMNKMITARSFFASGVIGG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL  252 (402)
Q Consensus       174 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~  252 (402)
                      .++|++|..+++=+.+...+....... ..-++ +|++.-...+    ...++++|..++.++.+...+..-. .....-
T Consensus       213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~-~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~~d~-~p~~SP  286 (419)
T PRK04043        213 PTLYKYNLYTGKKEKIASSQGMLVVSD-VSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPGIDV-NGNFVE  286 (419)
T ss_pred             CEEEEEECCCCcEEEEecCCCcEEeeE-ECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCCccC-ccEECC
Confidence            489999998887666554221111111 12233 5555443322    4679999999999988855443111 112222


Q ss_pred             CC-EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--------CcEEEEEeCCCC
Q 040145          253 DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--------RMKLKVYDPSTD  323 (402)
Q Consensus       253 ~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--------~~~~~~yd~~~~  323 (402)
                      +| +||+.....+    ...++.+|+.+++.+.+... ..  ......-+|+.+++-...        ...++.+|+++.
T Consensus       287 DG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g  359 (419)
T PRK04043        287 DDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD  359 (419)
T ss_pred             CCCEEEEEECCCC----CceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence            45 5777654321    24799999999888776531 11  112233345433332221        258999999999


Q ss_pred             ceeecCCCCCCccccCCeEEEEeCCE-EEEEecCceeeeEEEEeccc
Q 040145          324 SWETIEGPPLPEQICKPFAVNACDCR-VYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       324 ~W~~~~~~~~p~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~v~~~~~  369 (402)
                      .++.+...  .   ....-....||+ |+.....  .....++.++.
T Consensus       360 ~~~~LT~~--~---~~~~p~~SPDG~~I~f~~~~--~~~~~L~~~~l  399 (419)
T PRK04043        360 YIRRLTAN--G---VNQFPRFSSDGGSIMFIKYL--GNQSALGIIRL  399 (419)
T ss_pred             CeEECCCC--C---CcCCeEECCCCCEEEEEEcc--CCcEEEEEEec
Confidence            88887632  1   122233345555 5444432  22344555554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=94.29  E-value=4  Score=36.97  Aligned_cols=248  Identities=15%  Similarity=0.127  Sum_probs=121.2

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      +..||++...........+.+|+..++-+.+.....+.    ...+.+++..++..++...+      ....+-+|-..+
T Consensus        51 ~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g----~~p~yvsvd~~g~~vf~AnY------~~g~v~v~p~~~  120 (346)
T COG2706          51 QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG----SPPCYVSVDEDGRFVFVANY------HSGSVSVYPLQA  120 (346)
T ss_pred             CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC----CCCeEEEECCCCCEEEEEEc------cCceEEEEEccc
Confidence            45789887765566777888999888887776554332    11244444345544444333      234566666544


Q ss_pred             C-c-eee------cCCCccccc----ceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCC-CCCcc--e
Q 040145          184 N-R-WTV------MNKMITARS----FFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG-TNMAS--Y  247 (402)
Q Consensus       184 ~-~-W~~------~~~~~~~r~----~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~~~~--~  247 (402)
                      + . |..      ..+-|.+|-    .|.+.. -++++.+.--.     ....+.+|+...+.-+...... .+..+  |
T Consensus       121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-----G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH  195 (346)
T COG2706         121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-----GTDRIFLYDLDDGKLTPADPAEVKPGAGPRH  195 (346)
T ss_pred             CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec-----CCceEEEEEcccCccccccccccCCCCCcce
Confidence            2 2 221      222333441    222222 23433333211     1567888988876654432211 22222  2


Q ss_pred             eEEEECCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccc--cccCCCce----eE--EEECCEEEEEeccCCcEEEE-
Q 040145          248 DAAVLDGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGWTG----SS--VVVYEHLFVVSELERMKLKV-  317 (402)
Q Consensus       248 ~~~~~~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~----~~--~~~~~~l~~~gg~~~~~~~~-  317 (402)
                      ...--|++ .|++.-.++    .-.++.||...++.+++..  .+|....+    +.  +.-+|+.+.+--...+.|.+ 
T Consensus       196 i~FHpn~k~aY~v~EL~s----tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f  271 (346)
T COG2706         196 IVFHPNGKYAYLVNELNS----TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF  271 (346)
T ss_pred             EEEcCCCcEEEEEeccCC----EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            22222665 588766532    1256778888788887753  24443322    12  23366644443222334444 


Q ss_pred             -EeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccc
Q 040145          318 -YDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       318 -yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                       .|+.+..-..+...+.-...-+.|.+.- +++++|+-+-.+.. ..|+..|+.+.
T Consensus       272 ~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~-i~vf~~d~~TG  325 (346)
T COG2706         272 SVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDN-ITVFERDKETG  325 (346)
T ss_pred             EEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCc-EEEEEEcCCCc
Confidence             4666665444432111111112344444 44445544433332 55666666544

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=94.29  E-value=3.5  Score=36.23  Aligned_cols=182  Identities=16%  Similarity=0.146  Sum_probs=104.8

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCC-----CceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQK-----NRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPV  230 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t-----~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~  230 (402)
                      .+++|++.+..+      +.++.|.-.+     +...+.-.+|.+-.+.+.++.+|.+|.--..      ...+..||..
T Consensus        30 ~~~iy~~~~~~~------~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~------s~~IvkydL~   97 (250)
T PF02191_consen   30 SEKIYVTSGFSG------NTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYN------SRNIVKYDLT   97 (250)
T ss_pred             CCCEEEECccCC------CEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEecC------CceEEEEECc
Confidence            678999887632      2566664432     2333334566666777888899988877553      7889999999


Q ss_pred             CCcEEEcCCCCCCCcc------------eeEEEECCEEEEEcccccCCccCCcEEEEeCCCC----CeeeccccccCCCc
Q 040145          231 KGNWRTIASMGTNMAS------------YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD----NWESMAVGLREGWT  294 (402)
Q Consensus       231 t~~W~~~~~~~~~~~~------------~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~~~~  294 (402)
                      ++.-..-..+|.+...            ...++=++-|.++-...+... .-.+-..|+.+-    +|..-   .+....
T Consensus        98 t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw~T~---~~k~~~  173 (250)
T PF02191_consen   98 TRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTWNTS---YPKRSA  173 (250)
T ss_pred             CCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEEEec---cCchhh
Confidence            9875422223322211            112232334555433221111 114556677643    56532   344444


Q ss_pred             eeEEEECCEEEEEeccC---CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEe---CCEEEEEec
Q 040145          295 GSSVVVYEHLFVVSELE---RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC---DCRVYVVGR  355 (402)
Q Consensus       295 ~~~~~~~~~l~~~gg~~---~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~---~~~i~v~GG  355 (402)
                      +-+.++-|.||++....   ....+.||..+++=..+. ++.+.. ....+++.+   +.+||+.-.
T Consensus       174 ~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~-i~f~~~-~~~~~~l~YNP~dk~LY~wd~  238 (250)
T PF02191_consen  174 GNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVS-IPFPNP-YGNISMLSYNPRDKKLYAWDN  238 (250)
T ss_pred             cceeeEeeEEEEEEECCCCCcEEEEEEECCCCceecee-eeeccc-cCceEeeeECCCCCeEEEEEC
Confidence            44557789999997665   456789999988655443 344432 223355543   677888765

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=94.25  E-value=3.1  Score=36.00  Aligned_cols=162  Identities=13%  Similarity=0.106  Sum_probs=75.6

Q ss_pred             CceEEEEccCCEEEEEeCccCCCCCCCceEEEEE---CCCCceee--cCCCcc-------cccceEEEEECCEEEEEcCC
Q 040145          147 GFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE---MQKNRWTV--MNKMIT-------ARSFFASGVIGGMIYVAGGS  214 (402)
Q Consensus       147 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d---~~t~~W~~--~~~~~~-------~r~~~~~~~~~~~iyv~GG~  214 (402)
                      .+...++  +++||..--.-.-....+...+.|+   ...+.|+.  ++..+.       .-.-|+.+.+++.-|.+|-.
T Consensus        77 CmSMGv~--~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyH  154 (367)
T PF12217_consen   77 CMSMGVV--GNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYH  154 (367)
T ss_dssp             -B-EEEE--TTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEE
T ss_pred             eeeeeee--cceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEec
Confidence            3444455  8888876422111112344555565   34567865  444443       24457888888888888865


Q ss_pred             CCCCCCCCeeEEEcCCC-----CcE-EEcC-CCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc
Q 040145          215 SADLFELDSAEVLDPVK-----GNW-RTIA-SMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV  287 (402)
Q Consensus       215 ~~~~~~~~~~~~yd~~t-----~~W-~~~~-~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~  287 (402)
                      .+...+..--..|-+..     ..- +.++ .........+.-.++|+||+.--...+...-..+..-+.....|+.+.-
T Consensus       155 nGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf  234 (367)
T PF12217_consen  155 NGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF  234 (367)
T ss_dssp             E-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-
T ss_pred             cCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc
Confidence            44433222223332211     111 2222 2222223344556799999985443333333466777777788998874


Q ss_pred             cccCCCceeE-EEECCEEEEEecc
Q 040145          288 GLREGWTGSS-VVVYEHLFVVSEL  310 (402)
Q Consensus       288 ~~~~~~~~~~-~~~~~~l~~~gg~  310 (402)
                      +-........ +..++.||+||..
T Consensus       235 p~nvHhtnlPFakvgD~l~mFgsE  258 (367)
T PF12217_consen  235 PNNVHHTNLPFAKVGDVLYMFGSE  258 (367)
T ss_dssp             TT---SS---EEEETTEEEEEEE-
T ss_pred             cccccccCCCceeeCCEEEEEecc
Confidence            3222222222 6789999999853

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=94.17  E-value=5.6  Score=38.21  Aligned_cols=182  Identities=14%  Similarity=0.037  Sum_probs=94.6

Q ss_pred             ceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145          118 KIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR  196 (402)
Q Consensus       118 ~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r  196 (402)
                      ...++++|..+++-..+...+..       ........++ .|++....+     ...+++++|..++.-+.+..-....
T Consensus       227 ~~~l~~~dl~~g~~~~l~~~~g~-------~~~~~~SpDG~~l~~~~s~~-----g~~~Iy~~d~~~g~~~~lt~~~~~~  294 (433)
T PRK04922        227 RSAIYVQDLATGQRELVASFRGI-------NGAPSFSPDGRRLALTLSRD-----GNPEIYVMDLGSRQLTRLTNHFGID  294 (433)
T ss_pred             CcEEEEEECCCCCEEEeccCCCC-------ccCceECCCCCEEEEEEeCC-----CCceEEEEECCCCCeEECccCCCCc
Confidence            45678889888777666544311       1122222344 555443221     1348999999998876664322111


Q ss_pred             cceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCccee-EEEECC-EEEEEcccccCCccCCcEEE
Q 040145          197 SFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYD-AAVLDG-KLLVTEGWLWPFFVSPRGQV  274 (402)
Q Consensus       197 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~-~~~~~g-~ly~~gG~~~~~~~~~~~~~  274 (402)
                      .......-+..|++.....+    ...++.+|..++..+.+..-  ...... ...-+| .|++..+..+    ...++.
T Consensus       295 ~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~----~~~I~v  364 (433)
T PRK04922        295 TEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSGG----QYRIAV  364 (433)
T ss_pred             cceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCCC----ceeEEE
Confidence            11111112334555443222    34688899888887766421  111112 222244 4555443211    136899


Q ss_pred             EeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCC
Q 040145          275 YDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTD  323 (402)
Q Consensus       275 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~  323 (402)
                      +|+.++....+.... . .......-+|+.+++....  ...++.+|....
T Consensus       365 ~d~~~g~~~~Lt~~~-~-~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        365 MDLSTGSVRTLTPGS-L-DESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EECCCCCeEECCCCC-C-CCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            999888877665321 1 1122334466655554332  346888888654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=94.05  E-value=2.8  Score=38.96  Aligned_cols=116  Identities=15%  Similarity=0.223  Sum_probs=67.9

Q ss_pred             ceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEE
Q 040145          198 FFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQV  274 (402)
Q Consensus       198 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~  274 (402)
                      .++++++ ++.|+..|-.      -..+-+||.....  .++.+|..-.......+  ||-..+.+..+      ..+..
T Consensus       350 ~ts~~fHpDgLifgtgt~------d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add------~~V~l  415 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTP------DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD------GSVKL  415 (506)
T ss_pred             eEEeeEcCCceEEeccCC------CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC------CeEEE
Confidence            3445555 5667766654      3457789998876  66666664333344444  44444444322      24889


Q ss_pred             EeCCCCC-eeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCC
Q 040145          275 YDPSTDN-WESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEG  330 (402)
Q Consensus       275 yd~~~~~-W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~  330 (402)
                      +|+...+ ...+.  .+....-....+  .|..++++|. .-.|+.|+..+..|+++..
T Consensus       416 wDLRKl~n~kt~~--l~~~~~v~s~~fD~SGt~L~~~g~-~l~Vy~~~k~~k~W~~~~~  471 (506)
T KOG0289|consen  416 WDLRKLKNFKTIQ--LDEKKEVNSLSFDQSGTYLGIAGS-DLQVYICKKKTKSWTEIKE  471 (506)
T ss_pred             EEehhhcccceee--ccccccceeEEEcCCCCeEEeecc-eeEEEEEecccccceeeeh
Confidence            9997654 33332  222221112333  4666777765 4578888889999999984

>PLN00181 protein SPA1-RELATED; Provisional

Probab=94.03  E-value=9.1  Score=40.09  Aligned_cols=174  Identities=14%  Similarity=0.082  Sum_probs=84.3

Q ss_pred             CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc-ccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI-TARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      +..++.|+.+       ..+.+||..+++-..  .+. ....-.++...  ++.+++.|+.      -..+.+||..+..
T Consensus       545 ~~~las~~~D-------g~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~------Dg~v~iWd~~~~~  609 (793)
T PLN00181        545 KSQVASSNFE-------GVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSD------DGSVKLWSINQGV  609 (793)
T ss_pred             CCEEEEEeCC-------CeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcC------CCEEEEEECCCCc
Confidence            4556666652       278899988764322  111 11122233332  4567777776      3457888987654


Q ss_pred             E-EEcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEECCEEEEE
Q 040145          234 W-RTIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVYEHLFVV  307 (402)
Q Consensus       234 W-~~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~~~  307 (402)
                      - ..+.   .. .....+.+   ++.++++|+.+      ..+..||..+..  ...+.. .. .........++..++.
T Consensus       610 ~~~~~~---~~-~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~-h~-~~V~~v~f~~~~~lvs  677 (793)
T PLN00181        610 SIGTIK---TK-ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIG-HS-KTVSYVRFVDSSTLVS  677 (793)
T ss_pred             EEEEEe---cC-CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecC-CC-CCEEEEEEeCCCEEEE
Confidence            2 1221   11 11112222   46777777653      378999987542  111111 00 1111122346666666


Q ss_pred             eccCCcEEEEEeCCCC----ceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145          308 SELERMKLKVYDPSTD----SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV  359 (402)
Q Consensus       308 gg~~~~~~~~yd~~~~----~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~  359 (402)
                      |+. ...+.+||....    .|..+....-. ...........++.+++.|+.++.
T Consensus       678 ~s~-D~~ikiWd~~~~~~~~~~~~l~~~~gh-~~~i~~v~~s~~~~~lasgs~D~~  731 (793)
T PLN00181        678 SST-DNTLKLWDLSMSISGINETPLHSFMGH-TNVKNFVGLSVSDGYIATGSETNE  731 (793)
T ss_pred             EEC-CCEEEEEeCCCCccccCCcceEEEcCC-CCCeeEEEEcCCCCEEEEEeCCCE
Confidence            665 456888887643    23332211100 001111223345677777775544

>PTZ00421 coronin; Provisional

Probab=93.89  E-value=6.9  Score=38.26  Aligned_cols=152  Identities=8%  Similarity=0.111  Sum_probs=73.8

Q ss_pred             CEEEEEeCccCCCCCCCceEEEEECCCCceee-cCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145          157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNW  234 (402)
Q Consensus       157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  234 (402)
                      +.+++.|+.+       ..+.+||..+++-.. +...  ...-.++.. .++.+++.|+.      -..+.+||+.++.-
T Consensus       138 ~~iLaSgs~D-------gtVrIWDl~tg~~~~~l~~h--~~~V~sla~spdG~lLatgs~------Dg~IrIwD~rsg~~  202 (493)
T PTZ00421        138 MNVLASAGAD-------MVVNVWDVERGKAVEVIKCH--SDQITSLEWNLDGSLLCTTSK------DKKLNIIDPRDGTI  202 (493)
T ss_pred             CCEEEEEeCC-------CEEEEEECCCCeEEEEEcCC--CCceEEEEEECCCCEEEEecC------CCEEEEEECCCCcE
Confidence            4577777763       268899998775221 1111  111122222 25677777775      35688999987652


Q ss_pred             E-EcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEE--CCEEEEEec
Q 040145          235 R-TIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVV--YEHLFVVSE  309 (402)
Q Consensus       235 ~-~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~--~~~l~~~gg  309 (402)
                      . .+...............++..++..|....  ....+..||+.+..  .....  ...........+  ++.++++||
T Consensus       203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s--~Dr~VklWDlr~~~~p~~~~~--~d~~~~~~~~~~d~d~~~L~lgg  278 (493)
T PTZ00421        203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKS--QQRQIMLWDTRKMASPYSTVD--LDQSSALFIPFFDEDTNLLYIGS  278 (493)
T ss_pred             EEEEecCCCCcceEEEEcCCCCeEEEEecCCC--CCCeEEEEeCCCCCCceeEec--cCCCCceEEEEEcCCCCEEEEEE
Confidence            1 221111111111111123334444443211  12368899986533  11111  111111111222  566666676


Q ss_pred             cCCcEEEEEeCCCCceee
Q 040145          310 LERMKLKVYDPSTDSWET  327 (402)
Q Consensus       310 ~~~~~~~~yd~~~~~W~~  327 (402)
                      .+...|..||..+.+...
T Consensus       279 kgDg~Iriwdl~~~~~~~  296 (493)
T PTZ00421        279 KGEGNIRCFELMNERLTF  296 (493)
T ss_pred             eCCCeEEEEEeeCCceEE
Confidence            545678899988776544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=93.78  E-value=6.5  Score=37.59  Aligned_cols=186  Identities=6%  Similarity=-0.086  Sum_probs=102.4

Q ss_pred             ceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145          118 KIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR  196 (402)
Q Consensus       118 ~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r  196 (402)
                      ..+++++|..+++-+.+...+.       .........++ +|++.-...     ...++|++|..++.++++...+...
T Consensus       212 ~~~Iyv~dl~tg~~~~lt~~~g-------~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~~g~~~~LT~~~~~d  279 (419)
T PRK04043        212 KPTLYKYNLYTGKKEKIASSQG-------MLVVSDVSKDGSKLLLTMAPK-----GQPDIYLYDTNTKTLTQITNYPGID  279 (419)
T ss_pred             CCEEEEEECCCCcEEEEecCCC-------cEEeeEECCCCCEEEEEEccC-----CCcEEEEEECCCCcEEEcccCCCcc
Confidence            3478999998887777654331       11122222344 565544332     2458999999999998886544311


Q ss_pred             cceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCE-EEEEcccccCC--ccCCcEE
Q 040145          197 SFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGK-LLVTEGWLWPF--FVSPRGQ  273 (402)
Q Consensus       197 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~-ly~~gG~~~~~--~~~~~~~  273 (402)
                      .......-+.+||+.....+    ...++++|..++..+++..-.  ... ....-+|+ |.+........  .....++
T Consensus       280 ~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g--~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~  352 (419)
T PRK04043        280 VNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHG--KNN-SSVSTYKNYIVYSSRETNNEFGKNTFNLY  352 (419)
T ss_pred             CccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCC--CcC-ceECCCCCEEEEEEcCCCcccCCCCcEEE
Confidence            12222222457777765422    467999999998887664221  112 12333555 43333221111  1124789


Q ss_pred             EEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCCc
Q 040145          274 VYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTDS  324 (402)
Q Consensus       274 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~~  324 (402)
                      .+|++++.++.+... . ........-+|+.+++....  ...++.++.+.+.
T Consensus       353 v~d~~~g~~~~LT~~-~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~  403 (419)
T PRK04043        353 LISTNSDYIRRLTAN-G-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK  403 (419)
T ss_pred             EEECCCCCeEECCCC-C-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence            999999998888752 1 11122334466644443221  3457788887653

>PTZ00421 coronin; Provisional

Probab=93.70  E-value=7.5  Score=38.02  Aligned_cols=146  Identities=11%  Similarity=0.113  Sum_probs=70.6

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceee-----cCCCccc-ccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-----MNKMITA-RSFFASGVI--GGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-----~~~~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      ++.+++.|+.+       ..+.+||..++....     +..+... ..-..+...  ++.+++.||.      -..+.+|
T Consensus        87 d~~~LaSgS~D-------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~------DgtVrIW  153 (493)
T PTZ00421         87 DPQKLFTASED-------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA------DMVVNVW  153 (493)
T ss_pred             CCCEEEEEeCC-------CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC------CCEEEEE
Confidence            45677777763       268888876643211     1111111 111122222  2356777765      3468899


Q ss_pred             cCCCCcEEEcCCCCCCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCCee-eccccccCCCceeEE-EECCE
Q 040145          228 DPVKGNWRTIASMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVGLREGWTGSSV-VVYEH  303 (402)
Q Consensus       228 d~~t~~W~~~~~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~-~~~~~  303 (402)
                      |..++.-..  .+.........+.  .+|.+++.|+.+      ..+.+||+.+++-. .+.. ........++ ..++.
T Consensus       154 Dl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D------g~IrIwD~rsg~~v~tl~~-H~~~~~~~~~w~~~~~  224 (493)
T PTZ00421        154 DVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTIVSSVEA-HASAKSQRCLWAKRKD  224 (493)
T ss_pred             ECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC------CEEEEEECCCCcEEEEEec-CCCCcceEEEEcCCCC
Confidence            998765321  1111111122222  267777777753      36889999876521 1211 1111111111 12333


Q ss_pred             EEEEeccC---CcEEEEEeCCCC
Q 040145          304 LFVVSELE---RMKLKVYDPSTD  323 (402)
Q Consensus       304 l~~~gg~~---~~~~~~yd~~~~  323 (402)
                      .++..|.+   ...+..||..+.
T Consensus       225 ~ivt~G~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        225 LIITLGCSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             eEEEEecCCCCCCeEEEEeCCCC
Confidence            33333432   357999998653

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.30  E-value=6.4  Score=35.97  Aligned_cols=243  Identities=16%  Similarity=0.063  Sum_probs=109.7

Q ss_pred             CeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEc-cCCEEEEEeCccCC--CCCCCceEEEEEC
Q 040145          105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIP-REGTLFVCGGMVSD--VDCPLDLVLKYEM  181 (402)
Q Consensus       105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~-~~~~i~v~GG~~~~--~~~~~~~~~~~d~  181 (402)
                      +.+|+..........+++++|..+++..-+-+..        .++..++. .+..+|+..-...-  ...+++-+.+||+
T Consensus         3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g--------~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~   74 (342)
T PF06433_consen    3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTG--------FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDT   74 (342)
T ss_dssp             TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEE--------SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEET
T ss_pred             cEEEEECCccccccceEEEEECCCCcEEEEeecc--------cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEec
Confidence            5678875422222357999999998865443222        12222232 34567765422100  0135778999999


Q ss_pred             CCCceee---cCCC---c-cc-ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCc--------
Q 040145          182 QKNRWTV---MNKM---I-TA-RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMA--------  245 (402)
Q Consensus       182 ~t~~W~~---~~~~---~-~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~--------  245 (402)
                      .|-+-+.   +|+-   . .+ +..+....-+..+||.--     .+..+|-+.|.+.++--.  .++.|.+        
T Consensus        75 ~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~-----TPa~SVtVVDl~~~kvv~--ei~~PGC~~iyP~~~  147 (342)
T PF06433_consen   75 QTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF-----TPATSVTVVDLAAKKVVG--EIDTPGCWLIYPSGN  147 (342)
T ss_dssp             TTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE-----SSSEEEEEEETTTTEEEE--EEEGTSEEEEEEEET
T ss_pred             CcCcccceEecCCcchheecccccceEEccCCcEEEEEcc-----CCCCeEEEEECCCCceee--eecCCCEEEEEecCC
Confidence            9985332   3431   1 11 112222222335566532     237789999999987643  2222222        


Q ss_pred             -ceeEEEECCEEEEEc-ccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEe--ccCCcEEEEEeC
Q 040145          246 -SYDAAVLDGKLLVTE-GWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVS--ELERMKLKVYDP  320 (402)
Q Consensus       246 -~~~~~~~~g~ly~~g-G~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~g--g~~~~~~~~yd~  320 (402)
                       +..+.+-+|.+..+. +..+... ...-..||+..+-.-.-+. ......... ..++|.+|-+.  |....-...+..
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~-~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~  225 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPA-YSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL  225 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--E-EETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred             CceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccc-eECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence             222222244443321 1111111 1122455555443221111 111111111 45677777652  221111222222


Q ss_pred             CC-----CceeecCCCCCCccccCCeEEEEeCCEEEEEe-----cCceeeeEEEEecccccc
Q 040145          321 ST-----DSWETIEGPPLPEQICKPFAVNACDCRVYVVG-----RNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       321 ~~-----~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~G-----G~~~~~~~~v~~~~~~~~  372 (402)
                      .+     ..|..=        .....+.....++|||+-     |..+..-.+||+||+.++
T Consensus       226 ~t~~e~~~~WrPG--------G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~  279 (342)
T PF06433_consen  226 LTDAEKADGWRPG--------GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH  279 (342)
T ss_dssp             S-HHHHHTTEEE---------SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT
T ss_pred             cCccccccCcCCc--------ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC
Confidence            11     123221        122334445678999864     233556789999998776

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd00094 HX Hemopexin-like repeats

Probab=93.28  E-value=4.4  Score=34.07  Aligned_cols=146  Identities=16%  Similarity=0.137  Sum_probs=76.5

Q ss_pred             ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc--eeec----CCCcccccceEEEEE-CCEEEEEcCCCCCCCC
Q 040145          148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVM----NKMITARSFFASGVI-GGMIYVAGGSSADLFE  220 (402)
Q Consensus       148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~----~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~  220 (402)
                      ..++.. ..+.+|++-|.         .+|+++.....  -+.+    +.+|. ....+.... ++++|++-|.      
T Consensus         9 iDA~~~-~~g~~y~FkG~---------~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg~------   71 (194)
T cd00094           9 FDAVTT-LRGELYFFKGR---------YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKGD------   71 (194)
T ss_pred             CCeEEE-eCCEEEEEeCC---------EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECCC------
Confidence            344443 35899999775         68888865211  1111    11221 111122222 3789999763      


Q ss_pred             CCeeEEEcCCCCcEE---EcCCCCCCC--cc-eeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeec-----cc
Q 040145          221 LDSAEVLDPVKGNWR---TIASMGTNM--AS-YDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM-----AV  287 (402)
Q Consensus       221 ~~~~~~yd~~t~~W~---~~~~~~~~~--~~-~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~-----~~  287 (402)
                        ..+.||..+..+.   .+.....+.  .. -++...  ++++|++.|.        ..+.||..+++...-     ..
T Consensus        72 --~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~~v~~~yP~~i~~  141 (194)
T cd00094          72 --KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQKMDPGYPKLIET  141 (194)
T ss_pred             --EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCccccCCCCcchhh
Confidence              4677776542221   111111111  22 223333  6899999884        678888766554211     10


Q ss_pred             ---cccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCCc
Q 040145          288 ---GLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       288 ---~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                         ..+.. ..++... ++++|++-|.   ..++||..+++
T Consensus       142 ~w~g~p~~-idaa~~~~~~~~yfF~g~---~y~~~d~~~~~  178 (194)
T cd00094         142 DFPGVPDK-VDAAFRWLDGYYYFFKGD---QYWRFDPRSKE  178 (194)
T ss_pred             cCCCcCCC-cceeEEeCCCcEEEEECC---EEEEEeCccce
Confidence               11211 1222223 4899999665   79999998765

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.06  E-value=9.6  Score=37.33  Aligned_cols=208  Identities=15%  Similarity=0.152  Sum_probs=101.6

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCC-CCceEEEEccC-CEEEEEeCccCCCCCCCceEEE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCP-HGFRCVSIPRE-GTLFVCGGMVSDVDCPLDLVLK  178 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~-~~~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~~~  178 (402)
                      .++.+|+...+     ..++++|..+.+  |+.-...+....... ...+. ++ .+ +.||+...        ...++.
T Consensus        60 ~~g~vy~~~~~-----g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~-~~-~~~~~V~v~~~--------~g~v~A  124 (488)
T cd00216          60 VDGDMYFTTSH-----SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGV-AY-WDPRKVFFGTF--------DGRLVA  124 (488)
T ss_pred             ECCEEEEeCCC-----CcEEEEECCCChhhceeCCCCCccccccccccCCc-EE-ccCCeEEEecC--------CCeEEE
Confidence            46777775422     358899998765  865322220000000 01112 22 25 77776432        237999


Q ss_pred             EECCCCc--eeecCCCcc-cc--cceEEEEECCEEEEEcCCCCCC---CCCCeeEEEcCCCCc--EEEcCCCC----CCC
Q 040145          179 YEMQKNR--WTVMNKMIT-AR--SFFASGVIGGMIYVAGGSSADL---FELDSAEVLDPVKGN--WRTIASMG----TNM  244 (402)
Q Consensus       179 ~d~~t~~--W~~~~~~~~-~r--~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~t~~--W~~~~~~~----~~~  244 (402)
                      +|..|++  |+.-..... ..  ...+.++.++.+|+ |..+...   .....++.||..|++  |+.-...+    .+.
T Consensus       125 lD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~  203 (488)
T cd00216         125 LDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPT  203 (488)
T ss_pred             EECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCC
Confidence            9999885  876432211 00  12233455666665 4322111   114578999998875  87532111    000


Q ss_pred             ----------c---ceeEEEE---CCEEEEEccccc-----------CCccCCcEEEEeCCCC--Ceeecccccc----C
Q 040145          245 ----------A---SYDAAVL---DGKLLVTEGWLW-----------PFFVSPRGQVYDPSTD--NWESMAVGLR----E  291 (402)
Q Consensus       245 ----------~---~~~~~~~---~g~ly~~gG~~~-----------~~~~~~~~~~yd~~~~--~W~~~~~~~~----~  291 (402)
                                .   ..+...+   ++.+|+-.+...           +....+.++++|.+++  .|+.-.....    .
T Consensus       204 ~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~  283 (488)
T cd00216         204 WGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYD  283 (488)
T ss_pred             CCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccc
Confidence                      0   0111222   467777654320           1122347999999887  4875322111    0


Q ss_pred             CCceeEE----EECCE---EEEEeccCCcEEEEEeCCCCc--eee
Q 040145          292 GWTGSSV----VVYEH---LFVVSELERMKLKVYDPSTDS--WET  327 (402)
Q Consensus       292 ~~~~~~~----~~~~~---l~~~gg~~~~~~~~yd~~~~~--W~~  327 (402)
                      ......+    ..++.   +.++|.. ...++.+|.++.+  |+.
T Consensus       284 ~~s~p~~~~~~~~~g~~~~~V~~g~~-~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         284 GPNQPSLADIKPKDGKPVPAIVHAPK-NGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             cCCCCeEEeccccCCCeeEEEEEECC-CceEEEEECCCCcEeeEe
Confidence            1111111    12332   3333433 4579999998764  765

The alignment model contains an 8-bladed beta-propeller.

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.05  E-value=0.062  Score=47.47  Aligned_cols=44  Identities=18%  Similarity=0.303  Sum_probs=37.9

Q ss_pred             CCCCcHHHHHHhhccC-----ccchhhhhhhccHhHHHhhcCchHhHHHH
Q 040145           53 IPGLPDDVALNCLLRL-----PVESHAACRAVCKRWHLLLGNKERFFTRR   97 (402)
Q Consensus        53 ~~~Lp~dl~~~il~rl-----p~~~l~~~~~v~k~W~~l~~s~~~~~~~r   97 (402)
                      |..||||++.+||.++     ...++.++.+|||.|......| ++...-
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~-~lwR~a  155 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP-ELWRLA  155 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh-HHHHHH
Confidence            5789999999999864     4589999999999999999999 776443

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=92.82  E-value=6.3  Score=34.62  Aligned_cols=157  Identities=15%  Similarity=0.109  Sum_probs=88.6

Q ss_pred             CceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc---eeecCCCccc---------ccceEEEEECCEEEEEcCC
Q 040145          147 GFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR---WTVMNKMITA---------RSFFASGVIGGMIYVAGGS  214 (402)
Q Consensus       147 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~---W~~~~~~~~~---------r~~~~~~~~~~~iyv~GG~  214 (402)
                      +-+.++.  +|.+|.--.       .+..+..||..+++   +..+|.....         ....-.++-.+-|+|+-..
T Consensus        71 GtG~vVY--ngslYY~~~-------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat  141 (250)
T PF02191_consen   71 GTGHVVY--NGSLYYNKY-------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYAT  141 (250)
T ss_pred             cCCeEEE--CCcEEEEec-------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEec
Confidence            3444444  777776533       36689999999986   4455543211         1122334444567777555


Q ss_pred             CCCCCCCCeeEEEcCCCC----cEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecccccc
Q 040145          215 SADLFELDSAEVLDPVKG----NWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLR  290 (402)
Q Consensus       215 ~~~~~~~~~~~~yd~~t~----~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~  290 (402)
                      .+... .--+-..|+.+-    +|..-  .+.. ....+.++-|.||++-......  ..-.++||+.+++=..+..+.+
T Consensus       142 ~~~~g-~ivvskld~~tL~v~~tw~T~--~~k~-~~~naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~i~f~  215 (250)
T PF02191_consen  142 EDNNG-NIVVSKLDPETLSVEQTWNTS--YPKR-SAGNAFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVSIPFP  215 (250)
T ss_pred             CCCCC-cEEEEeeCcccCceEEEEEec--cCch-hhcceeeEeeEEEEEEECCCCC--cEEEEEEECCCCceeceeeeec
Confidence            33221 234556677654    57642  2222 2223455578999997765332  2356899999887766655455


Q ss_pred             CCCceeE-EEE---CCEEEEEeccCCcEEEEEeCC
Q 040145          291 EGWTGSS-VVV---YEHLFVVSELERMKLKVYDPS  321 (402)
Q Consensus       291 ~~~~~~~-~~~---~~~l~~~gg~~~~~~~~yd~~  321 (402)
                      .+....+ +..   +.+||+..   ......|+..
T Consensus       216 ~~~~~~~~l~YNP~dk~LY~wd---~G~~v~Y~v~  247 (250)
T PF02191_consen  216 NPYGNISMLSYNPRDKKLYAWD---NGYQVTYDVR  247 (250)
T ss_pred             cccCceEeeeECCCCCeEEEEE---CCeEEEEEEE
Confidence            5444333 333   57888873   2356666653

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.55  E-value=4.4  Score=40.04  Aligned_cols=113  Identities=17%  Similarity=0.264  Sum_probs=66.6

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCcccc--------cceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITAR--------SFFASGVIGGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ++.||+....        ..++.+|..|++  |+.-...+...        ...+.+..+++||+...       ...+.
T Consensus        69 ~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~  133 (527)
T TIGR03075        69 DGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLV  133 (527)
T ss_pred             CCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEE
Confidence            8899986532        268999999885  87644332111        11234566788887542       34689


Q ss_pred             EEcCCCCc--EEEcC-CCCCC-CcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eee
Q 040145          226 VLDPVKGN--WRTIA-SMGTN-MASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WES  284 (402)
Q Consensus       226 ~yd~~t~~--W~~~~-~~~~~-~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~  284 (402)
                      .+|.+|++  |+.-. ++... .....-++.+++||+-....+ ......+.+||.++++  |+.
T Consensus       134 ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       134 ALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             EEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEec
Confidence            99999886  86532 22211 112234566888877532111 1112368899998874  764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13684 Ycf48-like protein; Provisional

Probab=92.43  E-value=8.9  Score=35.40  Aligned_cols=193  Identities=12%  Similarity=0.196  Sum_probs=90.1

Q ss_pred             CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCC-Cccccc-ceEEEEEC
Q 040145          128 HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK-MITARS-FFASGVIG  205 (402)
Q Consensus       128 ~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~-~~~~r~-~~~~~~~~  205 (402)
                      ...|+... .+..     ..+..+.+...+..|++|-.        ..+++=+=.-.+|+.... ++.... ...+...+
T Consensus        34 ~~~W~~~~-~~~~-----~~l~~v~F~d~~~g~avG~~--------G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~   99 (334)
T PRK13684         34 SSPWQVID-LPTE-----ANLLDIAFTDPNHGWLVGSN--------RTLLETNDGGETWEERSLDLPEENFRLISISFKG   99 (334)
T ss_pred             CCCcEEEe-cCCC-----CceEEEEEeCCCcEEEEECC--------CEEEEEcCCCCCceECccCCcccccceeeeEEcC
Confidence            34687664 3311     22333444345567777632        122222122247988642 322222 22333345


Q ss_pred             CEEEEEcCCCCCCCCCCeeEEEcCCC--CcEEEcCCC-CCCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCC
Q 040145          206 GMIYVAGGSSADLFELDSAEVLDPVK--GNWRTIASM-GTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDN  281 (402)
Q Consensus       206 ~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~-~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~  281 (402)
                      +..|++|..       .  .+|-...  .+|+.+... ..+......... ++.+|+.|...       .+++=+-.-.+
T Consensus       100 ~~~~~~G~~-------g--~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G-------~i~~S~DgG~t  163 (334)
T PRK13684        100 DEGWIVGQP-------S--LLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNVG-------AIYRTTDGGKN  163 (334)
T ss_pred             CcEEEeCCC-------c--eEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeeccc-------eEEEECCCCCC
Confidence            556666532       1  2344433  479988532 112222223333 34466655421       35555555678


Q ss_pred             eeeccccccCCCceeEEEECCEEEEEeccCCcEEEE-EeCCCCceeecCCCCCCccccCCeEE-EEeCCEEEEEecC
Q 040145          282 WESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKV-YDPSTDSWETIEGPPLPEQICKPFAV-NACDCRVYVVGRN  356 (402)
Q Consensus       282 W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~-yd~~~~~W~~~~~~~~p~~~~~~~~~-~~~~~~i~v~GG~  356 (402)
                      |+.+...... .........+..+++.|..+ .++. .|....+|+.+..   +.. ....++ ...++.++++|..
T Consensus       164 W~~~~~~~~g-~~~~i~~~~~g~~v~~g~~G-~i~~s~~~gg~tW~~~~~---~~~-~~l~~i~~~~~g~~~~vg~~  234 (334)
T PRK13684        164 WEALVEDAAG-VVRNLRRSPDGKYVAVSSRG-NFYSTWEPGQTAWTPHQR---NSS-RRLQSMGFQPDGNLWMLARG  234 (334)
T ss_pred             ceeCcCCCcc-eEEEEEECCCCeEEEEeCCc-eEEEEcCCCCCeEEEeeC---CCc-ccceeeeEcCCCCEEEEecC
Confidence            9998753322 22222233333444444323 3443 3555568998863   211 222333 3457888888764

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.27  E-value=6.2  Score=33.21  Aligned_cols=181  Identities=13%  Similarity=0.139  Sum_probs=103.9

Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc-ccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI-TARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      .+++||...|..     ..+.+.++|..+++-..-.+++ ..-.+-+.+.+++.+|..--.      ..-.++||+.|  
T Consensus        54 ~~g~i~esTG~y-----g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~------egvaf~~d~~t--  120 (262)
T COG3823          54 LDGHILESTGLY-----GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK------EGVAFKYDADT--  120 (262)
T ss_pred             eCCEEEEecccc-----ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec------cceeEEEChHH--
Confidence            488999888874     3458999999988633322333 234455778889999988543      23457888865  


Q ss_pred             EEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCe-eecc---ccccCCCceeEEEECCEEEEEec
Q 040145          234 WRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMA---VGLREGWTGSSVVVYEHLFVVSE  309 (402)
Q Consensus       234 W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~---~~~~~~~~~~~~~~~~~l~~~gg  309 (402)
                      .+.+...+....+++.+.-+..|.+..|.       ..+..-||++-.= ..+.   ...|..-..-.=.++|.+|.==-
T Consensus       121 ~~~lg~~~y~GeGWgLt~d~~~LimsdGs-------atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw  193 (262)
T COG3823         121 LEELGRFSYEGEGWGLTSDDKNLIMSDGS-------ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVW  193 (262)
T ss_pred             hhhhcccccCCcceeeecCCcceEeeCCc-------eEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeee
Confidence            44666677777777777766666665553       2455556654211 1111   11111111111234666664211


Q ss_pred             cCCcEEEEEeCCCC---ceeecCCCCCCccccCC-----eEEE--EeCCEEEEEecC
Q 040145          310 LERMKLKVYDPSTD---SWETIEGPPLPEQICKP-----FAVN--ACDCRVYVVGRN  356 (402)
Q Consensus       310 ~~~~~~~~yd~~~~---~W~~~~~~~~p~~~~~~-----~~~~--~~~~~i~v~GG~  356 (402)
                       -...|.+.||++.   .|.++.+++.-......     .+.+  ..+|++||.|-.
T Consensus       194 -~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~  249 (262)
T COG3823         194 -QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL  249 (262)
T ss_pred             -eecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence             1568899999886   59888853211111111     1222  345788888763

>PTZ00420 coronin; Provisional

Probab=92.18  E-value=13  Score=36.89  Aligned_cols=143  Identities=10%  Similarity=0.115  Sum_probs=67.9

Q ss_pred             CEEEEEeCccCCCCCCCceEEEEECCCCc--eeecC----CCccc-ccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEE
Q 040145          157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMN----KMITA-RSFFASGVI--GGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~----~~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      +.+++.|+.+       ..+.+||..++.  ...+.    .+... ..-.+++..  +..+++.||.      -..+.+|
T Consensus        87 ~~lLASgS~D-------gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~------DgtIrIW  153 (568)
T PTZ00420         87 SEILASGSED-------LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF------DSFVNIW  153 (568)
T ss_pred             CCEEEEEeCC-------CeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC------CCeEEEE
Confidence            5677777763       268888876532  11111    01111 111122222  2345556665      3467889


Q ss_pred             cCCCCcEEEcCCCCCCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCCee-eccccccCCCceeEEE-----
Q 040145          228 DPVKGNWRTIASMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVGLREGWTGSSVV-----  299 (402)
Q Consensus       228 d~~t~~W~~~~~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~-----  299 (402)
                      |..+..=.  ..+.... ...++.  .+|.+++.++.+      ..+.+||+.+++=. .+.. .........+.     
T Consensus       154 Dl~tg~~~--~~i~~~~-~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~~i~tl~g-H~g~~~s~~v~~~~fs  223 (568)
T PTZ00420        154 DIENEKRA--FQINMPK-KLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQEIASSFHI-HDGGKNTKNIWIDGLG  223 (568)
T ss_pred             ECCCCcEE--EEEecCC-cEEEEEECCCCCEEEEEecC------CEEEEEECCCCcEEEEEec-ccCCceeEEEEeeeEc
Confidence            98876511  1111111 122222  267777776642      36899999875421 1111 11111111111     


Q ss_pred             ECCEEEEEeccCC---cEEEEEeCCC
Q 040145          300 VYEHLFVVSELER---MKLKVYDPST  322 (402)
Q Consensus       300 ~~~~l~~~gg~~~---~~~~~yd~~~  322 (402)
                      .++..++.+|.+.   ..+.+||..+
T Consensus       224 ~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        224 GDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             CCCCEEEEEEcCCCCccEEEEEECCC
Confidence            2445555556543   3699999874

>smart00284 OLF Olfactomedin-like domains

Probab=91.97  E-value=8.1  Score=33.89  Aligned_cols=184  Identities=14%  Similarity=0.082  Sum_probs=101.5

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECC----CCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCC
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQ----KNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVK  231 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~----t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t  231 (402)
                      ++++|+..+..    ...+.++.|...    .+.+.+.-.+|.+-.+.+.++.+|.+|.--..      ...+..||..+
T Consensus        34 ~~~~wv~~~~~----~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~------s~~iiKydL~t  103 (255)
T smart00284       34 KSLYWYMPLNT----RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN------SHDICRFDLTT  103 (255)
T ss_pred             CceEEEEcccc----CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC------CccEEEEECCC
Confidence            46788876642    123356666433    33444444567777778889999999986543      57799999999


Q ss_pred             CcEEEcCCCCCCC----c-----c---eeEEEECCEEEEEcccccCCccCCcEEEEeCCCC----CeeeccccccCCCce
Q 040145          232 GNWRTIASMGTNM----A-----S---YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD----NWESMAVGLREGWTG  295 (402)
Q Consensus       232 ~~W~~~~~~~~~~----~-----~---~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~~~~~  295 (402)
                      ++-.....+|.+.    .     +   ...++-++-|.++=...+. ...-.+-..|+.+-    +|..-   .+....+
T Consensus       104 ~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~-~g~ivvSkLnp~tL~ve~tW~T~---~~k~sa~  179 (255)
T smart00284      104 ETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN-AGKIVISKLNPATLTIENTWITT---YNKRSAS  179 (255)
T ss_pred             CcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC-CCCEEEEeeCcccceEEEEEEcC---CCccccc
Confidence            8865444444332    1     1   1122323334333221111 01113456777654    56551   3333344


Q ss_pred             eEEEECCEEEEEeccC---CcEEEEEeCCCCceeecCCCCCCccccCCeEEEE---eCCEEEEEec
Q 040145          296 SSVVVYEHLFVVSELE---RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA---CDCRVYVVGR  355 (402)
Q Consensus       296 ~~~~~~~~l~~~gg~~---~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~---~~~~i~v~GG  355 (402)
                      -+.++-|.||++-...   ....+.||..+++=..+ .++.+.. ....+++-   -+.+||+.--
T Consensus       180 naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~-~i~f~n~-y~~~s~l~YNP~d~~LY~wdn  243 (255)
T smart00284      180 NAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHL-DIPFENM-YEYISMLDYNPNDRKLYAWNN  243 (255)
T ss_pred             ccEEEeeEEEEEccCCCCCcEEEEEEECCCCcccee-eeeeccc-cccceeceeCCCCCeEEEEeC
Confidence            4456778999996322   34688999998753322 2344432 22334443   3567887653

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=91.72  E-value=9.9  Score=34.42  Aligned_cols=194  Identities=10%  Similarity=0.140  Sum_probs=85.8

Q ss_pred             CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC--CceeecCC-Cccc-ccc-eEEE
Q 040145          128 HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK--NRWTVMNK-MITA-RSF-FASG  202 (402)
Q Consensus       128 ~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t--~~W~~~~~-~~~~-r~~-~~~~  202 (402)
                      ...|+.+. ++..     ..+..+.+...+.-|++|-.         .. +|-...  .+|+.... ...+ ... ..+.
T Consensus         5 ~~~W~~v~-l~t~-----~~l~dV~F~d~~~G~~VG~~---------g~-il~T~DGG~tW~~~~~~~~~~~~~~l~~I~   68 (302)
T PF14870_consen    5 GNSWQQVS-LPTD-----KPLLDVAFVDPNHGWAVGAY---------GT-ILKTTDGGKTWQPVSLDLDNPFDYHLNSIS   68 (302)
T ss_dssp             S--EEEEE--S-S-----S-EEEEEESSSS-EEEEETT---------TE-EEEESSTTSS-EE-----S-----EEEEEE
T ss_pred             CCCcEEee-cCCC-----CceEEEEEecCCEEEEEecC---------CE-EEEECCCCccccccccCCCccceeeEEEEE
Confidence            45687765 2211     22444444456788888753         12 233322  37988653 2222 222 2444


Q ss_pred             EECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC-CCCCCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCC
Q 040145          203 VIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA-SMGTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTD  280 (402)
Q Consensus       203 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~  280 (402)
                      ..++..|++|..       ..++.-.=.-.+|++++ +.+.+........+ ++.+++++..       ..++.-.-.-.
T Consensus        69 f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~  134 (302)
T PF14870_consen   69 FDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGK  134 (302)
T ss_dssp             EETTEEEEEEET-------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTS
T ss_pred             ecCCceEEEcCC-------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCC
Confidence            567888988742       22232222456799985 22233333333333 5666666543       14555555667


Q ss_pred             CeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEec
Q 040145          281 NWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGR  355 (402)
Q Consensus       281 ~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG  355 (402)
                      +|+.+..............-+|++++++. .++-....|+....|....   .+...|...-....++.|+++.-
T Consensus       135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~-~G~~~~s~~~G~~~w~~~~---r~~~~riq~~gf~~~~~lw~~~~  205 (302)
T PF14870_consen  135 TWQAVVSETSGSINDITRSSDGRYVAVSS-RGNFYSSWDPGQTTWQPHN---RNSSRRIQSMGFSPDGNLWMLAR  205 (302)
T ss_dssp             SEEEEE-S----EEEEEE-TTS-EEEEET-TSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-TTS-EEEEET
T ss_pred             CeeEcccCCcceeEeEEECCCCcEEEEEC-cccEEEEecCCCccceEEc---cCccceehhceecCCCCEEEEeC
Confidence            89987653332222212234667666654 3666778899988999886   22222444344456778888764

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.44  E-value=16  Score=37.80  Aligned_cols=31  Identities=19%  Similarity=0.462  Sum_probs=22.9

Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCc
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMI  193 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~  193 (402)
                      .++.||+...        .+.++.+|..|++  |+.-+..+
T Consensus       193 vgg~lYv~t~--------~~~V~ALDa~TGk~lW~~d~~~~  225 (764)
T TIGR03074       193 VGDTLYLCTP--------HNKVIALDAATGKEKWKFDPKLK  225 (764)
T ss_pred             ECCEEEEECC--------CCeEEEEECCCCcEEEEEcCCCC
Confidence            3999999854        3479999999885  88765443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.31  E-value=13  Score=35.12  Aligned_cols=192  Identities=11%  Similarity=0.096  Sum_probs=90.9

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECC-CCceeecCCCc-ccccceEEEEEC-CEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQ-KNRWTVMNKMI-TARSFFASGVIG-GMIYVAGGSSADLFELDSAEVLDPVKG  232 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~-t~~W~~~~~~~-~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~  232 (402)
                      ++..|++|-.         .+...... -.+|++++..+ .+........++ +.++++|.       ...++.=+-.-.
T Consensus       146 ~~~g~~vG~~---------G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~-------~G~v~~S~D~G~  209 (398)
T PLN00033        146 GKEGWIIGKP---------AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTD-------EGAIYVTSNAGR  209 (398)
T ss_pred             CCEEEEEcCc---------eEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEec-------cceEEEECCCCC
Confidence            6778887642         12222222 34799875321 122223333443 45777763       223444333345


Q ss_pred             cEEEcCCCC----CCC--------------cceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCC
Q 040145          233 NWRTIASMG----TNM--------------ASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGW  293 (402)
Q Consensus       233 ~W~~~~~~~----~~~--------------~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~  293 (402)
                      +|+.+...+    ..+              ....... -++.++++|-..      +-+...|.....|+.+..+.+...
T Consensus       210 tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~~~~~~~~~l  283 (398)
T PLN00033        210 NWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQPHNRASARRI  283 (398)
T ss_pred             CceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEEecCCCccce
Confidence            798762111    110              0011111 245555555421      122234444445998876444444


Q ss_pred             ceeEEEECCEEEEEeccCCcEEEEEeCCCCc-----eeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEec
Q 040145          294 TGSSVVVYEHLFVVSELERMKLKVYDPSTDS-----WETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRL  367 (402)
Q Consensus       294 ~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~-----W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~  367 (402)
                      .......++.++++|...  .+++-+-....     |.++.   .+.......++. ..++.++++|...     .++.-
T Consensus       284 ~~v~~~~dg~l~l~g~~G--~l~~S~d~G~~~~~~~f~~~~---~~~~~~~l~~v~~~~d~~~~a~G~~G-----~v~~s  353 (398)
T PLN00033        284 QNMGWRADGGLWLLTRGG--GLYVSKGTGLTEEDFDFEEAD---IKSRGFGILDVGYRSKKEAWAAGGSG-----ILLRS  353 (398)
T ss_pred             eeeeEcCCCCEEEEeCCc--eEEEecCCCCcccccceeecc---cCCCCcceEEEEEcCCCcEEEEECCC-----cEEEe
Confidence            444445688899886542  44444444444     45443   221111122333 3467888888742     23443


Q ss_pred             ccccccCceeeeEEEEeC
Q 040145          368 STSEKKWSFSVQWQVVDA  385 (402)
Q Consensus       368 ~~~~~~~~~~~~W~~~~~  385 (402)
                      ...-+      +|++...
T Consensus       354 ~D~G~------tW~~~~~  365 (398)
T PLN00033        354 TDGGK------SWKRDKG  365 (398)
T ss_pred             CCCCc------ceeEccc
Confidence            33333      6777653

>smart00284 OLF Olfactomedin-like domains

Probab=91.19  E-value=9.8  Score=33.36  Aligned_cols=158  Identities=16%  Similarity=0.139  Sum_probs=84.2

Q ss_pred             CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccc----c--------cceEEEEECCEEEEEcC
Q 040145          146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITA----R--------SFFASGVIGGMIYVAGG  213 (402)
Q Consensus       146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~----r--------~~~~~~~~~~~iyv~GG  213 (402)
                      .+-+.++.  +|.+|.--.       .+..+..||..+++-.....+|.+    +        ...-.++-.+-|+|+=.
T Consensus        75 ~GtG~VVY--ngslYY~~~-------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYa  145 (255)
T smart00284       75 QGTGVVVY--NGSLYFNKF-------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYA  145 (255)
T ss_pred             ccccEEEE--CceEEEEec-------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEe
Confidence            33444544  888888543       246899999999975432223221    1        11233343455666644


Q ss_pred             CCCCCCCCCeeEEEcCCCC----cEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccc
Q 040145          214 SSADLFELDSAEVLDPVKG----NWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL  289 (402)
Q Consensus       214 ~~~~~~~~~~~~~yd~~t~----~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~  289 (402)
                      ..+... .--+-..||.|-    +|..  ..+... ...+.++=|.||++-.....  ...-.++||+.+++=..+..++
T Consensus       146 t~~~~g-~ivvSkLnp~tL~ve~tW~T--~~~k~s-a~naFmvCGvLY~~~s~~~~--~~~I~yayDt~t~~~~~~~i~f  219 (255)
T smart00284      146 TEQNAG-KIVISKLNPATLTIENTWIT--TYNKRS-ASNAFMICGILYVTRSLGSK--GEKVFYAYDTNTGKEGHLDIPF  219 (255)
T ss_pred             ccCCCC-CEEEEeeCcccceEEEEEEc--CCCccc-ccccEEEeeEEEEEccCCCC--CcEEEEEEECCCCccceeeeee
Confidence            322211 223456777654    4665  222221 22344556899998642211  1235789999987754444444


Q ss_pred             cCCCceeE-EEE---CCEEEEEeccCCcEEEEEeCC
Q 040145          290 REGWTGSS-VVV---YEHLFVVSELERMKLKVYDPS  321 (402)
Q Consensus       290 ~~~~~~~~-~~~---~~~l~~~gg~~~~~~~~yd~~  321 (402)
                      +......+ +-.   +.+||+.   +......||..
T Consensus       220 ~n~y~~~s~l~YNP~d~~LY~w---dng~~l~Y~v~  252 (255)
T smart00284      220 ENMYEYISMLDYNPNDRKLYAW---NNGHLVHYDIA  252 (255)
T ss_pred             ccccccceeceeCCCCCeEEEE---eCCeEEEEEEE
Confidence            44443333 333   5778877   33356677653

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.99  E-value=14  Score=34.67  Aligned_cols=149  Identities=17%  Similarity=0.191  Sum_probs=83.2

Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKG  232 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~  232 (402)
                      .++.+|+...   +     ..++.+|+.+++  |+....--..........-+++||+-...       ..+++||..++
T Consensus        67 ~dg~v~~~~~---~-----G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~-------g~~y~ld~~~G  131 (370)
T COG1520          67 GDGTVYVGTR---D-----GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD-------GKLYALDASTG  131 (370)
T ss_pred             eCCeEEEecC---C-----CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc-------ceEEEEECCCC
Confidence            4888998621   1     179999999987  86633220111111222237787766542       26899999655


Q ss_pred             --cEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCC--Ceeecccc-ccCCCceeEEEECCEEEEE
Q 040145          233 --NWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD--NWESMAVG-LREGWTGSSVVVYEHLFVV  307 (402)
Q Consensus       233 --~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~--~W~~~~~~-~~~~~~~~~~~~~~~l~~~  307 (402)
                        .|+.-.... .+..-..++.++.+|+...       ...++++|..++  .|+.-... ......+.....++.+|+-
T Consensus       132 ~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~-------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~  203 (370)
T COG1520         132 TLVWSRNVGGS-PYYASPPVVGDGTVYVGTD-------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVG  203 (370)
T ss_pred             cEEEEEecCCC-eEEecCcEEcCcEEEEecC-------CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEe
Confidence              487543332 2222334455777777531       136788888765  58743321 2222222224566777664


Q ss_pred             eccC-CcEEEEEeCCCC--ceee
Q 040145          308 SELE-RMKLKVYDPSTD--SWET  327 (402)
Q Consensus       308 gg~~-~~~~~~yd~~~~--~W~~  327 (402)
                       ..+ ...++.+|+++.  .|..
T Consensus       204 -~~~~~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         204 -SDGYDGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             -cCCCcceEEEEEccCCcEeeee
Confidence             221 236889999765  5874

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=90.95  E-value=7.5  Score=31.60  Aligned_cols=82  Identities=17%  Similarity=0.114  Sum_probs=50.2

Q ss_pred             EEECCEEEEEcccccCCccCCcEEEEeCCCCCe-eeccccccCC-Cce-eE--EEECCEEEEEeccC---CcEEEEEeC-
Q 040145          250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVGLREG-WTG-SS--VVVYEHLFVVSELE---RMKLKVYDP-  320 (402)
Q Consensus       250 ~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~-~~~-~~--~~~~~~l~~~gg~~---~~~~~~yd~-  320 (402)
                      +.+||.+|-++........ ..+..||+.+.++ ..++.|.... ... ..  ++.+++|.++-...   ...||+.+- 
T Consensus         2 V~vnG~~hW~~~~~~~~~~-~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~   80 (164)
T PF07734_consen    2 VFVNGALHWLAYDENNDEK-DFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY   80 (164)
T ss_pred             EEECCEEEeeEEecCCCCc-eEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence            5679999998875433221 1689999999999 6665433222 111 12  23477887774221   357887762 


Q ss_pred             --CCCceeecCCCC
Q 040145          321 --STDSWETIEGPP  332 (402)
Q Consensus       321 --~~~~W~~~~~~~  332 (402)
                        ....|+++-.++
T Consensus        81 ~~~~~SWtK~~~i~   94 (164)
T PF07734_consen   81 GYGKESWTKLFTID   94 (164)
T ss_pred             ccCcceEEEEEEEe
Confidence              367899875433

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=90.82  E-value=1.1  Score=40.81  Aligned_cols=243  Identities=14%  Similarity=0.112  Sum_probs=105.8

Q ss_pred             CCCeEEEEEEe-----CCCCceeEEEeecCCCcEEeCCCCCCC-CCCC-CCCceEEEEccCCEEEEEeCccCCCCCCCce
Q 040145          103 KDPWLFVFAFH-----KCTGKIQWQVLDLTHYCWHTIPAMPCK-DKVC-PHGFRCVSIPREGTLFVCGGMVSDVDCPLDL  175 (402)
Q Consensus       103 ~~~~l~~~gg~-----~~~~~~~~~~~d~~~~~W~~l~~~~~~-~~~~-~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~  175 (402)
                      .+..+|+....     .+....-+.+||+.+-+-..--.+|.+ +... ...........+..+||.-=      .+..+
T Consensus        46 dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~------TPa~S  119 (342)
T PF06433_consen   46 DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF------TPATS  119 (342)
T ss_dssp             TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE------SSSEE
T ss_pred             CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc------CCCCe
Confidence            46667776531     123334467899998864332223322 2111 11222222223446666532      46779


Q ss_pred             EEEEECCCCceeecCCC-------cccccceEEEEECCEE-EEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcce
Q 040145          176 VLKYEMQKNRWTVMNKM-------ITARSFFASGVIGGMI-YVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASY  247 (402)
Q Consensus       176 ~~~~d~~t~~W~~~~~~-------~~~r~~~~~~~~~~~i-yv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  247 (402)
                      |-+.|...++.-..-+.       |.+-..|.+..-+|.+ .+.-+.++... .....+||+..+..-.-+.........
T Consensus       120 VtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~  198 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGGRL  198 (342)
T ss_dssp             EEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTTTEE
T ss_pred             EEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceECCCCeE
Confidence            99999999876432111       1221123322223333 22222222222 334467777765432221111111122


Q ss_pred             eEEEECCEEEEE--cccccCCccCCcEEEEeCCCCCeeeccc-----c-ccCCCceeEEE-ECCEEEEEe---ccC----
Q 040145          248 DAAVLDGKLLVT--EGWLWPFFVSPRGQVYDPSTDNWESMAV-----G-LREGWTGSSVV-VYEHLFVVS---ELE----  311 (402)
Q Consensus       248 ~~~~~~g~ly~~--gG~~~~~~~~~~~~~yd~~~~~W~~~~~-----~-~~~~~~~~~~~-~~~~l~~~g---g~~----  311 (402)
                      .-..++|.+|-+  +|..        + .+   ...|+.+..     . .|.++.-.++. -.++||+.-   +..    
T Consensus       199 ~F~Sy~G~v~~~dlsg~~--------~-~~---~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd  266 (342)
T PF06433_consen  199 YFVSYEGNVYSADLSGDS--------A-KF---GKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKD  266 (342)
T ss_dssp             EEEBTTSEEEEEEETTSS--------E-EE---EEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS
T ss_pred             EEEecCCEEEEEeccCCc--------c-cc---cCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccC
Confidence            234557777763  3311        1 00   113443321     1 12333323322 368899872   211    


Q ss_pred             -CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCE--EEEEecCceeeeEEEEecccccc
Q 040145          312 -RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCR--VYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       312 -~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~--i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                       +..||+||+++.+  ++.-+++...  ...-.+..+++  ||.+-+.+    +++.+||....
T Consensus       267 pgteVWv~D~~t~k--rv~Ri~l~~~--~~Si~Vsqd~~P~L~~~~~~~----~~l~v~D~~tG  322 (342)
T PF06433_consen  267 PGTEVWVYDLKTHK--RVARIPLEHP--IDSIAVSQDDKPLLYALSAGD----GTLDVYDAATG  322 (342)
T ss_dssp             -EEEEEEEETTTTE--EEEEEEEEEE--ESEEEEESSSS-EEEEEETTT----TEEEEEETTT-
T ss_pred             CceEEEEEECCCCe--EEEEEeCCCc--cceEEEccCCCcEEEEEcCCC----CeEEEEeCcCC
Confidence             4589999999985  3332233321  11122233444  55453422    34777776543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK01742 tolB translocation protein TolB; Provisional

Probab=90.63  E-value=16  Score=34.98  Aligned_cols=161  Identities=12%  Similarity=0.065  Sum_probs=79.8

Q ss_pred             ceEEEEECCCCceeecCCCcccccceEEEE-ECC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE
Q 040145          174 DLVLKYEMQKNRWTVMNKMITARSFFASGV-IGG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV  251 (402)
Q Consensus       174 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~  251 (402)
                      ..++++|..++.-+.+...+...  ..... -++ +|++....++    ...++.+|..++..+.+..-... .......
T Consensus       228 ~~i~i~dl~tg~~~~l~~~~g~~--~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wS  300 (429)
T PRK01742        228 SQLVVHDLRSGARKVVASFRGHN--GAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSGAGN-NTEPSWS  300 (429)
T ss_pred             cEEEEEeCCCCceEEEecCCCcc--CceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccCCCC-cCCEEEC
Confidence            47999999888766555433211  12222 244 4544433222    24588889888776665432211 1111222


Q ss_pred             ECCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCC
Q 040145          252 LDGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEG  330 (402)
Q Consensus       252 ~~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~  330 (402)
                      -+|+ |++.....+    ...++.+|..++.-..+..   .. ......-+|+.+++.+.  ..++.+|..+..+..+..
T Consensus       301 pDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~---~~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~  370 (429)
T PRK01742        301 PDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG---RG-YSAQISADGKTLVMING--DNVVKQDLTSGSTEVLSS  370 (429)
T ss_pred             CCCCEEEEEECCCC----CceEEEEECCCCCeEEecC---CC-CCccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecC
Confidence            3555 555433221    1356777765553333321   11 11222335554444332  357789999888876642


Q ss_pred             CCCCccccCCeEEEEeCCEEEEEecC
Q 040145          331 PPLPEQICKPFAVNACDCRVYVVGRN  356 (402)
Q Consensus       331 ~~~p~~~~~~~~~~~~~~~i~v~GG~  356 (402)
                       ..    .........+++.+++++.
T Consensus       371 -~~----~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        371 -TF----LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             -CC----CCCCceECCCCCEEEEEEc
Confidence             11    1112234557777776654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=89.93  E-value=18  Score=34.34  Aligned_cols=181  Identities=12%  Similarity=-0.014  Sum_probs=91.3

Q ss_pred             eeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145          119 IQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS  197 (402)
Q Consensus       119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~  197 (402)
                      ..++++|..+++...+......      ... .....++ .|++.....     ...+++.+|..++..+.+........
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~~------~~~-~~~spDg~~l~~~~~~~-----~~~~i~~~d~~~~~~~~l~~~~~~~~  281 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPGM------NGA-PAFSPDGSKLAVSLSKD-----GNPDIYVMDLDGKQLTRLTNGPGIDT  281 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCCC------ccc-eEECCCCCEEEEEECCC-----CCccEEEEECCCCCEEECCCCCCCCC
Confidence            4678888888766555433311      112 2222344 566554331     23479999999988777654322111


Q ss_pred             ceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE-EEECCEEEEEcccccCCccCCcEEEEe
Q 040145          198 FFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA-AVLDGKLLVTEGWLWPFFVSPRGQVYD  276 (402)
Q Consensus       198 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~-~~~~g~ly~~gG~~~~~~~~~~~~~yd  276 (402)
                      ......-+.+|++.....+    ...++++|..++.++.+....  ...... ..-+|+.+++......   ...++.+|
T Consensus       282 ~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~~---~~~i~~~d  352 (417)
T TIGR02800       282 EPSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHREGG---GFNIAVMD  352 (417)
T ss_pred             CEEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEccCC---ceEEEEEe
Confidence            1111112335555443222    347899999888877654221  111122 2235665555443221   23689999


Q ss_pred             CCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCC
Q 040145          277 PSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPST  322 (402)
Q Consensus       277 ~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~  322 (402)
                      +.++.++.+.... . .......-+++.+++....  ...+++++...
T Consensus       353 ~~~~~~~~l~~~~-~-~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       353 LDGGGERVLTDTG-L-DESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             CCCCCeEEccCCC-C-CCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            9887776665311 1 1122233355544443322  23566666544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=89.86  E-value=19  Score=34.55  Aligned_cols=183  Identities=9%  Similarity=-0.032  Sum_probs=91.7

Q ss_pred             eeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145          119 IQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS  197 (402)
Q Consensus       119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~  197 (402)
                      ..++.+|..+++-..+...+.       .........+| .|++.....     ...+++++|..+++.+++..-.....
T Consensus       223 ~~i~i~dl~~G~~~~l~~~~~-------~~~~~~~SPDG~~La~~~~~~-----g~~~I~~~d~~tg~~~~lt~~~~~~~  290 (429)
T PRK03629        223 SALVIQTLANGAVRQVASFPR-------HNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLASGQIRQVTDGRSNNT  290 (429)
T ss_pred             cEEEEEECCCCCeEEccCCCC-------CcCCeEECCCCCEEEEEEcCC-----CCcEEEEEECCCCCEEEccCCCCCcC
Confidence            356677777666555544431       11122333344 455543321     23369999999988777654322111


Q ss_pred             ceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeC
Q 040145          198 FFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDP  277 (402)
Q Consensus       198 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~  277 (402)
                      ......-+..|+......+    ...++.+|..++.-+.+..... ........-+|+.+++.+..+.   ...++.+|+
T Consensus       291 ~~~wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl  362 (429)
T PRK03629        291 EPTWFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG---QQHIAKQDL  362 (429)
T ss_pred             ceEECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC---CceEEEEEC
Confidence            1111112334544433221    3468888988876665532111 1111122235554444332211   236889999


Q ss_pred             CCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCC
Q 040145          278 STDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTD  323 (402)
Q Consensus       278 ~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~  323 (402)
                      .++.++.+....  ........-+|+.+++.+..  ...++..+.+..
T Consensus       363 ~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~  408 (429)
T PRK03629        363 ATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR  408 (429)
T ss_pred             CCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            999888776421  11122344577766665543  234566666543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=89.55  E-value=19  Score=34.16  Aligned_cols=139  Identities=15%  Similarity=0.095  Sum_probs=76.9

Q ss_pred             eEEEEECCCCceeecC-CCcccccc------------eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCC
Q 040145          175 LVLKYEMQKNRWTVMN-KMITARSF------------FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG  241 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~-~~~~~r~~------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~  241 (402)
                      ++|.|||.|..-+++. .+|..|..            --.+.+++..++.-.       ...+++.++-.+---.++...
T Consensus       288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-------RGkaFi~~~~~~~~iqv~~~~  360 (668)
T COG4946         288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-------RGKAFIMRPWDGYSIQVGKKG  360 (668)
T ss_pred             cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-------cCcEEEECCCCCeeEEcCCCC
Confidence            7999999999877753 22322211            112333444333322       334666666555444444333


Q ss_pred             CCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCC
Q 040145          242 TNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPS  321 (402)
Q Consensus       242 ~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~  321 (402)
                      .-|+.+  ...++.-.++|-.++     ..+.+||..+..-..+..++.. -....+.-+|+-.+++. +...+|++|.+
T Consensus       361 ~VrY~r--~~~~~e~~vigt~dg-----D~l~iyd~~~~e~kr~e~~lg~-I~av~vs~dGK~~vvaN-dr~el~vidid  431 (668)
T COG4946         361 GVRYRR--IQVDPEGDVIGTNDG-----DKLGIYDKDGGEVKRIEKDLGN-IEAVKVSPDGKKVVVAN-DRFELWVIDID  431 (668)
T ss_pred             ceEEEE--EccCCcceEEeccCC-----ceEEEEecCCceEEEeeCCccc-eEEEEEcCCCcEEEEEc-CceEEEEEEec
Confidence            333322  222334455665443     3788999999887777653322 12222445677666544 47789999998


Q ss_pred             CCceeecC
Q 040145          322 TDSWETIE  329 (402)
Q Consensus       322 ~~~W~~~~  329 (402)
                      +..=+.+.
T Consensus       432 ngnv~~id  439 (668)
T COG4946         432 NGNVRLID  439 (668)
T ss_pred             CCCeeEec
Confidence            88766554

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=89.55  E-value=25  Score=35.50  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=28.7

Q ss_pred             CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee
Q 040145          146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV  188 (402)
Q Consensus       146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~  188 (402)
                      ..|.++++...|.|++.|+.+      .-++++++..|++-..
T Consensus       436 ~QfscvavD~sGelV~AG~~d------~F~IfvWS~qTGqllD  472 (893)
T KOG0291|consen  436 IQFSCVAVDPSGELVCAGAQD------SFEIFVWSVQTGQLLD  472 (893)
T ss_pred             eeeeEEEEcCCCCEEEeeccc------eEEEEEEEeecCeeee
Confidence            568888885559999999874      3489999999997544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.45  E-value=21  Score=34.54  Aligned_cols=193  Identities=13%  Similarity=0.139  Sum_probs=98.0

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC-c-eeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN-R-WTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~-~-W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ..+.+..++++.+.|..       -..+.+||...+ . -+.+.......  ++++.. .+.+++.|+.      -.++.
T Consensus       207 ~~~~fs~d~~~l~s~s~-------D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~------D~tvr  271 (456)
T KOG0266|consen  207 SDVAFSPDGSYLLSGSD-------DKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSD------DGTVR  271 (456)
T ss_pred             eeeEECCCCcEEEEecC-------CceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecC------CCcEE
Confidence            33444456665555443       227888998433 2 33344333333  333332 4578888886      45688


Q ss_pred             EEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCee---eccccccCC-CceeEEE
Q 040145          226 VLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE---SMAVGLREG-WTGSSVV  299 (402)
Q Consensus       226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~---~~~~~~~~~-~~~~~~~  299 (402)
                      ++|..+.+-..  .+........++.+  ++.+++.+..+      ..+.+||..++.-.   .+.. .... ....+..
T Consensus       272 iWd~~~~~~~~--~l~~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~f  342 (456)
T KOG0266|consen  272 IWDVRTGECVR--KLKGHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQF  342 (456)
T ss_pred             EEeccCCeEEE--eeeccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCCCceeeeecccC-CCCCCceeEEEE
Confidence            99998854322  22222223333333  67777777643      36899999887743   2222 1111 1222233


Q ss_pred             ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEecccc
Q 040145          300 VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLSTS  370 (402)
Q Consensus       300 ~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~~  370 (402)
                      ..+-.|++.+.....+..||.....-...-. ......+..+..+ ..+++..+.|+.+..    |+.+|+.
T Consensus       343 sp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~sg~~d~~----v~~~~~~  409 (456)
T KOG0266|consen  343 SPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTGGKLIYSGSEDGS----VYVWDSS  409 (456)
T ss_pred             CCCCcEEEEecCCCeEEEEEccCCcceeeec-ccCCcceeEecccccCCCCeEEEEeCCce----EEEEeCC
Confidence            3444455555556678888887542221110 1111112333333 446677777775544    5555543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=89.17  E-value=16  Score=32.60  Aligned_cols=131  Identities=15%  Similarity=0.197  Sum_probs=69.5

Q ss_pred             eEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECC
Q 040145          175 LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDG  254 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g  254 (402)
                      ++..||..++.-+.  .+...-.-..++..+..-.+.||.      -..+-.||..++.=..+..--.+-....-. ...
T Consensus        36 slrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~------dg~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~  106 (323)
T KOG1036|consen   36 SLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGL------DGQVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEV  106 (323)
T ss_pred             cEEEEeccchhhhh--heecCCceeeeeccCCceEEEecc------CceEEEEEecCCcceeeccCCCceEEEEee-ccC
Confidence            68889988873221  111111123445556666677776      446889999988766554322221111111 122


Q ss_pred             EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          255 KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       255 ~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      ...+.||++      ..+..+|+....=.  .. ....-.-.+..+.|..+++|.. ...+.+||+.+..
T Consensus       107 ~~vIsgsWD------~~ik~wD~R~~~~~--~~-~d~~kkVy~~~v~g~~LvVg~~-~r~v~iyDLRn~~  166 (323)
T KOG1036|consen  107 GCVISGSWD------KTIKFWDPRNKVVV--GT-FDQGKKVYCMDVSGNRLVVGTS-DRKVLIYDLRNLD  166 (323)
T ss_pred             CeEEEcccC------ccEEEEeccccccc--cc-cccCceEEEEeccCCEEEEeec-CceEEEEEccccc
Confidence            334667764      36778887652110  00 1111111223456666777665 5689999998653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=89.07  E-value=12  Score=33.98  Aligned_cols=182  Identities=13%  Similarity=0.069  Sum_probs=96.1

Q ss_pred             EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE----ECCEEEEEcCCCCCCCCCCeeEE
Q 040145          151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV----IGGMIYVAGGSSADLFELDSAEV  226 (402)
Q Consensus       151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~  226 (402)
                      .++-.+.++.+.|..       -+.+.++|..|+.-     +. .-..|+-++    +++.+.+....      -.++.+
T Consensus       241 LCLqyd~rviisGSS-------DsTvrvWDv~tge~-----l~-tlihHceaVLhlrf~ng~mvtcSk------DrsiaV  301 (499)
T KOG0281|consen  241 LCLQYDERVIVSGSS-------DSTVRVWDVNTGEP-----LN-TLIHHCEAVLHLRFSNGYMVTCSK------DRSIAV  301 (499)
T ss_pred             EeeeccceEEEecCC-------CceEEEEeccCCch-----hh-HHhhhcceeEEEEEeCCEEEEecC------CceeEE
Confidence            344457787777654       34788999988752     11 111222111    22332333222      234555


Q ss_pred             EcCCCCcEEEcC---CCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCE
Q 040145          227 LDPVKGNWRTIA---SMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEH  303 (402)
Q Consensus       227 yd~~t~~W~~~~---~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  303 (402)
                      +|..+-+  .+.   -+-..|.....+-+++++.+....      ...+-+++..+...-.+-.  ...+.-+++.++|+
T Consensus       302 Wdm~sps--~it~rrVLvGHrAaVNvVdfd~kyIVsASg------DRTikvW~~st~efvRtl~--gHkRGIAClQYr~r  371 (499)
T KOG0281|consen  302 WDMASPT--DITLRRVLVGHRAAVNVVDFDDKYIVSASG------DRTIKVWSTSTCEFVRTLN--GHKRGIACLQYRDR  371 (499)
T ss_pred             EeccCch--HHHHHHHHhhhhhheeeeccccceEEEecC------CceEEEEeccceeeehhhh--cccccceehhccCe
Confidence            5554332  111   122334444555668884443322      2367888888877654422  22222233578999


Q ss_pred             EEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145          304 LFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       304 l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      +.+-|. +.+.|..+|.+...--.+-.  --   -.-..++-++++=.|-||++..  ..||.+..
T Consensus       372 lvVSGS-SDntIRlwdi~~G~cLRvLe--GH---EeLvRciRFd~krIVSGaYDGk--ikvWdl~a  429 (499)
T KOG0281|consen  372 LVVSGS-SDNTIRLWDIECGACLRVLE--GH---EELVRCIRFDNKRIVSGAYDGK--IKVWDLQA  429 (499)
T ss_pred             EEEecC-CCceEEEEeccccHHHHHHh--ch---HHhhhheeecCceeeeccccce--EEEEeccc
Confidence            877655 47789999998776444321  00   0111345567887788887655  45666644

>cd00094 HX Hemopexin-like repeats

Probab=89.01  E-value=13  Score=31.28  Aligned_cols=143  Identities=20%  Similarity=0.151  Sum_probs=73.3

Q ss_pred             EEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC--cEEEcC----CCCCCCcceeEEEE--CCEEEEEcccccCCccCCcE
Q 040145          201 SGVIGGMIYVAGGSSADLFELDSAEVLDPVKG--NWRTIA----SMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRG  272 (402)
Q Consensus       201 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~----~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~  272 (402)
                      +....+++|++-|.        .++.++....  .-..+.    .+|.  .--++...  +|++|+|-|.        ..
T Consensus        12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~--~IDAa~~~~~~~~~yfFkg~--------~y   73 (194)
T cd00094          12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS--PVDAAFERPDTGKIYFFKGD--------KY   73 (194)
T ss_pred             EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC--CccEEEEECCCCEEEEECCC--------EE
Confidence            33446888998763        4566665411  112221    1221  11222232  3899999773        67


Q ss_pred             EEEeCCCCCeee---ccc-cccC--CCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceee-----cCC--CCCCccc
Q 040145          273 QVYDPSTDNWES---MAV-GLRE--GWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWET-----IEG--PPLPEQI  337 (402)
Q Consensus       273 ~~yd~~~~~W~~---~~~-~~~~--~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~-----~~~--~~~p~~~  337 (402)
                      +.||..+.....   +.. ..+.  ....++...  ++++|++.|.   ..++||...++-..     +..  ..+|.  
T Consensus        74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~---~y~ry~~~~~~v~~~yP~~i~~~w~g~p~--  148 (194)
T cd00094          74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD---KYWRYDEKTQKMDPGYPKLIETDFPGVPD--  148 (194)
T ss_pred             EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC---EEEEEeCCCccccCCCCcchhhcCCCcCC--
Confidence            888876422211   111 1111  111223223  6899999775   79999986654321     110  11332  


Q ss_pred             cCCeEEEEeCCEEEEEecCceeeeEEEEecccccc
Q 040145          338 CKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       338 ~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                      ...++....++++|++-|      ...+.||....
T Consensus       149 ~idaa~~~~~~~~yfF~g------~~y~~~d~~~~  177 (194)
T cd00094         149 KVDAAFRWLDGYYYFFKG------DQYWRFDPRSK  177 (194)
T ss_pred             CcceeEEeCCCcEEEEEC------CEEEEEeCccc
Confidence            122233344489999998      35788876443

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.99  E-value=25  Score=34.76  Aligned_cols=114  Identities=22%  Similarity=0.358  Sum_probs=67.7

Q ss_pred             EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCCc--------ceeEEEECCEEEEEcccccCCccC
Q 040145          200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNMA--------SYDAAVLDGKLLVTEGWLWPFFVS  269 (402)
Q Consensus       200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~--------~~~~~~~~g~ly~~gG~~~~~~~~  269 (402)
                      +.++.++.||+...       ...++.+|..|++  |+.-...+....        ....++.+++||+....       
T Consensus        64 tPvv~~g~vyv~s~-------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d-------  129 (527)
T TIGR03075        64 QPLVVDGVMYVTTS-------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD-------  129 (527)
T ss_pred             CCEEECCEEEEECC-------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-------
Confidence            34567899998654       3458999998865  876543321111        11235568888874331       


Q ss_pred             CcEEEEeCCCCC--eeeccccccCC--CceeEEEECCEEEEEeccC----CcEEEEEeCCCC--ceee
Q 040145          270 PRGQVYDPSTDN--WESMAVGLREG--WTGSSVVVYEHLFVVSELE----RMKLKVYDPSTD--SWET  327 (402)
Q Consensus       270 ~~~~~yd~~~~~--W~~~~~~~~~~--~~~~~~~~~~~l~~~gg~~----~~~~~~yd~~~~--~W~~  327 (402)
                      ..++++|.++++  |+.-.......  .....++.++++|+.....    ...+..||.++.  .|+.
T Consensus       130 g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       130 ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            368999998874  87543212211  1222367788887643211    347888998876  3763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=88.97  E-value=19  Score=33.37  Aligned_cols=122  Identities=9%  Similarity=-0.054  Sum_probs=66.9

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC--CCCCceEEEEE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV--DCPLDLVLKYE  180 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~--~~~~~~~~~~d  180 (402)
                      ...++|+..........++.++|..+.+-...-+....+    +  +. ....+..||+......-.  ....+.+.+||
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P----~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D   83 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLP----N--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVID   83 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCC----c--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence            356788875332122267999999887654432222111    2  22 332356888886531110  12467899999


Q ss_pred             CCCCceee-cCCCccccc-----ceEEEE-ECC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEE
Q 040145          181 MQKNRWTV-MNKMITARS-----FFASGV-IGG-MIYVAGGSSADLFELDSAEVLDPVKGNWRT  236 (402)
Q Consensus       181 ~~t~~W~~-~~~~~~~r~-----~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~  236 (402)
                      +.|.+-.. ++--+.||.     ....+. -+| .+|+.- .+    +.+.+.++|..+++-..
T Consensus        84 ~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~~----p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658        84 PQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-FS----PSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             CccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec-CC----CCCEEEEEECCCCcEEE
Confidence            99987543 332233341     122222 244 566653 11    25779999999987543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=88.20  E-value=22  Score=33.17  Aligned_cols=229  Identities=14%  Similarity=0.107  Sum_probs=99.5

Q ss_pred             CeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEE-eCccCCCCCCCceEEEEECCC
Q 040145          105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVC-GGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~-GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      +.-++|.++ .......+.+|..+.+-..|...+..     ..++......+..+|.+ .+.         .+...|..|
T Consensus        47 G~kllF~s~-~dg~~nly~lDL~t~~i~QLTdg~g~-----~~~g~~~s~~~~~~~Yv~~~~---------~l~~vdL~T  111 (386)
T PF14583_consen   47 GRKLLFASD-FDGNRNLYLLDLATGEITQLTDGPGD-----NTFGGFLSPDDRALYYVKNGR---------SLRRVDLDT  111 (386)
T ss_dssp             S-EEEEEE--TTSS-EEEEEETTT-EEEE---SS-B------TTT-EE-TTSSEEEEEETTT---------EEEEEETTT
T ss_pred             CCEEEEEec-cCCCcceEEEEcccCEEEECccCCCC-----CccceEEecCCCeEEEEECCC---------eEEEEECCc
Confidence            333444443 24555689999999999999876532     23444444456676544 332         789999999


Q ss_pred             CceeecCCCcccccceEEEEEC--CEEEEEcCC----CC-------------CCCCCCeeEEEcCCCCcEEEcCCCCCCC
Q 040145          184 NRWTVMNKMITARSFFASGVIG--GMIYVAGGS----SA-------------DLFELDSAEVLDPVKGNWRTIASMGTNM  244 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~~~~~~~~--~~iyv~GG~----~~-------------~~~~~~~~~~yd~~t~~W~~~~~~~~~~  244 (402)
                      .+-+.+-..|..-......+.+  +.. ++|-.    +.             ...+...+...|..|++.+.+-.-..-.
T Consensus       112 ~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wl  190 (386)
T PF14583_consen  112 LEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWL  190 (386)
T ss_dssp             --EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-E
T ss_pred             CcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccc
Confidence            8877766665544433333222  222 22211    00             0112456777888888776653211111


Q ss_pred             cceeEE-EECCEE--EEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCE-EEEEeccC---CcEEE
Q 040145          245 ASYDAA-VLDGKL--LVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEH-LFVVSELE---RMKLK  316 (402)
Q Consensus       245 ~~~~~~-~~~g~l--y~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~-l~~~gg~~---~~~~~  316 (402)
                       +|... -.+..+  ||.-|--  ......++..|........+...++.-..++= -.-+|. |+..+...   ..-+.
T Consensus       191 -gH~~fsP~dp~li~fCHEGpw--~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~  267 (386)
T PF14583_consen  191 -GHVQFSPTDPTLIMFCHEGPW--DLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA  267 (386)
T ss_dssp             -EEEEEETTEEEEEEEEE-S-T--TTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred             -cCcccCCCCCCEEEEeccCCc--ceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence             11111 113333  3333311  12223788999876665566543332222222 233444 33333221   34688


Q ss_pred             EEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCc
Q 040145          317 VYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNL  357 (402)
Q Consensus       317 ~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~  357 (402)
                      .||+++..=+.+.  ++|   ...|=+...+|++++--|++
T Consensus       268 ~~d~~t~~~~~~~--~~p---~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  268 GYDPDTGERRRLM--EMP---WCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EE-TTT--EEEEE--EE----SEEEEEE-TTSSEEEEEE--
T ss_pred             eeCCCCCCceEEE--eCC---ceeeeEEcCCCCEEEecCCC
Confidence            8899887533333  455   34566777889998877764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.11  E-value=16  Score=31.51  Aligned_cols=102  Identities=18%  Similarity=0.306  Sum_probs=55.7

Q ss_pred             EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc----------------CCCCCCCcceeEEEECCEEEEEcccccCCccCC
Q 040145          207 MIYVAGGSSADLFELDSAEVLDPVKGNWRTI----------------ASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSP  270 (402)
Q Consensus       207 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~----------------~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~  270 (402)
                      +-++.||++.    +-.++.||.  ++|..-                |....++...+++..+|.+++            
T Consensus       176 krlvSgGcDn----~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI------------  237 (299)
T KOG1332|consen  176 KRLVSGGCDN----LVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII------------  237 (299)
T ss_pred             ceeeccCCcc----ceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE------------
Confidence            4578898854    334555554  356432                122234444455555665544            


Q ss_pred             cEEEEeCCCCCeeecc-ccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCC-CceeecC
Q 040145          271 RGQVYDPSTDNWESMA-VGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPST-DSWETIE  329 (402)
Q Consensus       271 ~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~-~~W~~~~  329 (402)
                        +.-+.+.+.|+... ...+......+-.+.|.++.++|. .+.+..+-... .+|.++.
T Consensus       238 --wt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G-dNkvtlwke~~~Gkw~~v~  295 (299)
T KOG1332|consen  238 --WTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG-DNKVTLWKENVDGKWEEVG  295 (299)
T ss_pred             --EEecCccCcccccccccCCcceEEEEEeccccEEEEecC-CcEEEEEEeCCCCcEEEcc
Confidence              33344556787543 224444444444566777777654 44666665554 4899986

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=87.69  E-value=17  Score=31.33  Aligned_cols=148  Identities=16%  Similarity=0.091  Sum_probs=76.5

Q ss_pred             cEEEcCCCCC-----CCcc-eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEE---ECCE
Q 040145          233 NWRTIASMGT-----NMAS-YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV---VYEH  303 (402)
Q Consensus       233 ~W~~~~~~~~-----~~~~-~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~---~~~~  303 (402)
                      .|+...++..     |--. +...-..|.|++.||.       ..++..|+++++.+..-.....  +-++++   .++.
T Consensus       100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~rGHtD--YvH~vv~R~~~~q  170 (325)
T KOG0649|consen  100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYRGHTD--YVHSVVGRNANGQ  170 (325)
T ss_pred             hhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEcCCcc--eeeeeeecccCcc
Confidence            4777665543     2222 2222246788888874       2689999999987765321111  112222   3455


Q ss_pred             EEEEeccCCcEEEEEeCCCCceeecCC-CCCCcccc--CCe--EEEEeCCEEEEEecCceeeeEEEEecccccccCceee
Q 040145          304 LFVVSELERMKLKVYDPSTDSWETIEG-PPLPEQIC--KPF--AVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSV  378 (402)
Q Consensus       304 l~~~gg~~~~~~~~yd~~~~~W~~~~~-~~~p~~~~--~~~--~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~  378 (402)
                      |+ -|+ ....+.++|.+|.+=..+-. -.-|...|  .+-  ++...+..-+|.||+-+-   .+|-+...+       
T Consensus       171 il-sG~-EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~l---slwhLrsse-------  238 (325)
T KOG0649|consen  171 IL-SGA-EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKL---SLWHLRSSE-------  238 (325)
T ss_pred             ee-ecC-CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCce---eEEeccCCC-------
Confidence            54 244 35578899999876554422 11222112  111  444445556666665433   356654322       


Q ss_pred             eEEEEeCCCCCCCccccceeEEe
Q 040145          379 QWQVVDAPDNFSDLTPSSSQVLF  401 (402)
Q Consensus       379 ~W~~~~~~~~~~~~~~~~~~~~~  401 (402)
                      .=..++.|-..+.......+||+
T Consensus       239 ~t~vfpipa~v~~v~F~~d~vl~  261 (325)
T KOG0649|consen  239 STCVFPIPARVHLVDFVDDCVLI  261 (325)
T ss_pred             ceEEEecccceeEeeeecceEEE
Confidence            11345555555555555555554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=87.53  E-value=28  Score=33.69  Aligned_cols=172  Identities=8%  Similarity=-0.027  Sum_probs=87.7

Q ss_pred             eEEEEECCCCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCC-CCcceeEEE
Q 040145          175 LVLKYEMQKNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGT-NMASYDAAV  251 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~  251 (402)
                      .+|.+|-.++.-+.+.++.  +...+.+..  +|..+++|-.      ...+++||..+..  .+..+.. .....++..
T Consensus       198 ~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~------~g~v~iwD~~~~k--~~~~~~~~h~~rvg~la  267 (484)
T KOG0305|consen  198 SVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTS------DGTVQIWDVKEQK--KTRTLRGSHASRVGSLA  267 (484)
T ss_pred             eEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeec------CCeEEEEehhhcc--ccccccCCcCceeEEEe
Confidence            5777777777655555544  333333333  4777777765      4568999987654  2333333 222333444


Q ss_pred             ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE---EEECCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145          252 LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS---VVVYEHLFVVSELERMKLKVYDPSTDSWETI  328 (402)
Q Consensus       252 ~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~---~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~  328 (402)
                      .++.+...|...      ..+..+|.....=. +.. +.......+   ...++..+.-||. .+.+.+||.....+..-
T Consensus       268 W~~~~lssGsr~------~~I~~~dvR~~~~~-~~~-~~~H~qeVCgLkws~d~~~lASGgn-DN~~~Iwd~~~~~p~~~  338 (484)
T KOG0305|consen  268 WNSSVLSSGSRD------GKILNHDVRISQHV-VST-LQGHRQEVCGLKWSPDGNQLASGGN-DNVVFIWDGLSPEPKFT  338 (484)
T ss_pred             ccCceEEEecCC------CcEEEEEEecchhh-hhh-hhcccceeeeeEECCCCCeeccCCC-ccceEeccCCCccccEE
Confidence            577787877754      25777776543210 000 111111111   2235555555554 67888998833322211


Q ss_pred             CCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEec
Q 040145          329 EGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRL  367 (402)
Q Consensus       329 ~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~  367 (402)
                      -. .... .-...+-+-....|+..||+....+..+|.-
T Consensus       339 ~~-~H~a-AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~  375 (484)
T KOG0305|consen  339 FT-EHTA-AVKALAWCPWQSGLLATGGGSADRCIKFWNT  375 (484)
T ss_pred             Ee-ccce-eeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence            00 0000 0111233345677888888766655444443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=87.37  E-value=41  Score=35.28  Aligned_cols=143  Identities=13%  Similarity=0.056  Sum_probs=71.1

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      ++.+++.|+.+       ..+.+||..++.-.  ..+.......++..  -++..++.|+.      ...+.+||..+..
T Consensus       587 ~~~~L~Sgs~D-------g~v~iWd~~~~~~~--~~~~~~~~v~~v~~~~~~g~~latgs~------dg~I~iwD~~~~~  651 (793)
T PLN00181        587 DPTLLASGSDD-------GSVKLWSINQGVSI--GTIKTKANICCVQFPSESGRSLAFGSA------DHKVYYYDLRNPK  651 (793)
T ss_pred             CCCEEEEEcCC-------CEEEEEECCCCcEE--EEEecCCCeEEEEEeCCCCCEEEEEeC------CCeEEEEECCCCC
Confidence            56778888763       26889998765321  11111111112222  24677777765      3568899987542


Q ss_pred             --EEEcCCCCCCCcc-eeEEEECCEEEEEcccccCCccCCcEEEEeCCCC----CeeeccccccC-CC-ceeEEEECCEE
Q 040145          234 --WRTIASMGTNMAS-YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD----NWESMAVGLRE-GW-TGSSVVVYEHL  304 (402)
Q Consensus       234 --W~~~~~~~~~~~~-~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~-~~-~~~~~~~~~~l  304 (402)
                        ...+.   ..... ......++..++.|+.+      ..+..||+...    .|..+...... .. .......++.+
T Consensus       652 ~~~~~~~---~h~~~V~~v~f~~~~~lvs~s~D------~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~  722 (793)
T PLN00181        652 LPLCTMI---GHSKTVSYVRFVDSSTLVSSSTD------NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY  722 (793)
T ss_pred             ccceEec---CCCCCEEEEEEeCCCEEEEEECC------CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE
Confidence              11211   11111 12222366666666643      35778887643    23333221110 11 11112335666


Q ss_pred             EEEeccCCcEEEEEeCCCC
Q 040145          305 FVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       305 ~~~gg~~~~~~~~yd~~~~  323 (402)
                      ++.|+. ...+.+|+....
T Consensus       723 lasgs~-D~~v~iw~~~~~  740 (793)
T PLN00181        723 IATGSE-TNEVFVYHKAFP  740 (793)
T ss_pred             EEEEeC-CCEEEEEECCCC
Confidence            666665 567888887543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=87.34  E-value=23  Score=32.27  Aligned_cols=220  Identities=16%  Similarity=0.091  Sum_probs=108.0

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      .+.||.+.    .....++.||+.+.+-+... .|.      ...+...+-.++.|+++.-          .+..+++.+
T Consensus        36 ~~~L~w~D----I~~~~i~r~~~~~g~~~~~~-~p~------~~~~~~~~d~~g~Lv~~~~----------g~~~~~~~~   94 (307)
T COG3386          36 RGALLWVD----ILGGRIHRLDPETGKKRVFP-SPG------GFSSGALIDAGGRLIACEH----------GVRLLDPDT   94 (307)
T ss_pred             CCEEEEEe----CCCCeEEEecCCcCceEEEE-CCC------CcccceeecCCCeEEEEcc----------ccEEEeccC
Confidence            34455554    23345788888766544332 120      1112223322445555432          466677755


Q ss_pred             Cce-eecCC----CcccccceEEEEECCEEEEEcCC-----CCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEEC
Q 040145          184 NRW-TVMNK----MITARSFFASGVIGGMIYVAGGS-----SADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLD  253 (402)
Q Consensus       184 ~~W-~~~~~----~~~~r~~~~~~~~~~~iyv~GG~-----~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~  253 (402)
                      +.- +.+..    .+..|.+=..+.-++.+|+---.     .........++.|||. +...++..-......--+..-+
T Consensus        95 ~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpD  173 (307)
T COG3386          95 GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPD  173 (307)
T ss_pred             CceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCC
Confidence            543 55432    33345555555566776664222     1112224579999994 4554442211111111112225


Q ss_pred             C-EEEEEcccccCCccCCcEEEEeCCC--C----C--eeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          254 G-KLLVTEGWLWPFFVSPRGQVYDPST--D----N--WESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       254 g-~ly~~gG~~~~~~~~~~~~~yd~~~--~----~--W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      + .+|+.--.      .+.+++|+...  .    .  +..... .+..--+.++-.+|.+|+.+..++..+.+|+|+-..
T Consensus       174 g~tly~aDT~------~~~i~r~~~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l  246 (307)
T COG3386         174 GKTLYVADTP------ANRIHRYDLDPATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKL  246 (307)
T ss_pred             CCEEEEEeCC------CCeEEEEecCcccCccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEEEECCCCcE
Confidence            5 56665332      34677776652  1    1  111111 111223344567899997655555689999998444


Q ss_pred             eeecCCCCCCccccCCeEEEEeC---CEEEEEecCc
Q 040145          325 WETIEGPPLPEQICKPFAVNACD---CRVYVVGRNL  357 (402)
Q Consensus       325 W~~~~~~~~p~~~~~~~~~~~~~---~~i~v~GG~~  357 (402)
                      -.++   .+|..  ...+++..+   +.|||..-..
T Consensus       247 ~~~i---~lP~~--~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         247 LGEI---KLPVK--RPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             EEEE---ECCCC--CCccceEeCCCcCEEEEEecCC
Confidence            4444   46642  222333333   6788887654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=86.92  E-value=22  Score=31.71  Aligned_cols=91  Identities=18%  Similarity=0.206  Sum_probs=52.4

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF  199 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  199 (402)
                      .+-.||..+..=..+..-.       ..-.++.-......+|.||++.       .+.++||.+..  .......+..-+
T Consensus        76 ~vr~~Dln~~~~~~igth~-------~~i~ci~~~~~~~~vIsgsWD~-------~ik~wD~R~~~--~~~~~d~~kkVy  139 (323)
T KOG1036|consen   76 QVRRYDLNTGNEDQIGTHD-------EGIRCIEYSYEVGCVISGSWDK-------TIKFWDPRNKV--VVGTFDQGKKVY  139 (323)
T ss_pred             eEEEEEecCCcceeeccCC-------CceEEEEeeccCCeEEEcccCc-------cEEEEeccccc--cccccccCceEE
Confidence            3778999888766654333       1122333323456788899843       68889987621  111222333444


Q ss_pred             EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      ++.+.++. +++|+.      -..+.+||+.+..
T Consensus       140 ~~~v~g~~-LvVg~~------~r~v~iyDLRn~~  166 (323)
T KOG1036|consen  140 CMDVSGNR-LVVGTS------DRKVLIYDLRNLD  166 (323)
T ss_pred             EEeccCCE-EEEeec------CceEEEEEccccc
Confidence            55555555 455544      4578999997653

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=86.78  E-value=38  Score=34.27  Aligned_cols=178  Identities=15%  Similarity=0.113  Sum_probs=98.9

Q ss_pred             CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEE
Q 040145          157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRT  236 (402)
Q Consensus       157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~  236 (402)
                      |.-..+|+.      ....+.+|+-.+.+.---..-...+.......-++.+++.|+.+      ..|-+||..++.-..
T Consensus       319 GDWiA~g~~------klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD------gKVKvWn~~SgfC~v  386 (893)
T KOG0291|consen  319 GDWIAFGCS------KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED------GKVKVWNTQSGFCFV  386 (893)
T ss_pred             CCEEEEcCC------ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC------CcEEEEeccCceEEE
Confidence            666677764      36688899866655322222112232222333477888888874      346677776643211


Q ss_pred             cCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCC-CeeeccccccCCCceeEEEEC--CEEEEEeccC
Q 040145          237 IASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTD-NWESMAVGLREGWTGSSVVVY--EHLFVVSELE  311 (402)
Q Consensus       237 ~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~--~~l~~~gg~~  311 (402)
                        ....+-.+++++.+  .|+..+....++      .+-++|+..- .++....  |.+....+++++  |.|.+.|+.+
T Consensus       387 --TFteHts~Vt~v~f~~~g~~llssSLDG------tVRAwDlkRYrNfRTft~--P~p~QfscvavD~sGelV~AG~~d  456 (893)
T KOG0291|consen  387 --TFTEHTSGVTAVQFTARGNVLLSSSLDG------TVRAWDLKRYRNFRTFTS--PEPIQFSCVAVDPSGELVCAGAQD  456 (893)
T ss_pred             --EeccCCCceEEEEEEecCCEEEEeecCC------eEEeeeecccceeeeecC--CCceeeeEEEEcCCCCEEEeeccc
Confidence              11222233333322  455544443322      5677887653 3444443  344444455666  9999999998


Q ss_pred             CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145          312 RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV  359 (402)
Q Consensus       312 ~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~  359 (402)
                      ...|++++.+|.+-..+-.-.-.   ....-+....+.+++-|-++++
T Consensus       457 ~F~IfvWS~qTGqllDiLsGHEg---PVs~l~f~~~~~~LaS~SWDkT  501 (893)
T KOG0291|consen  457 SFEIFVWSVQTGQLLDILSGHEG---PVSGLSFSPDGSLLASGSWDKT  501 (893)
T ss_pred             eEEEEEEEeecCeeeehhcCCCC---cceeeEEccccCeEEeccccce
Confidence            88999999999876654311111   1111233456667777777655

>PRK02889 tolB translocation protein TolB; Provisional

Probab=86.63  E-value=31  Score=33.09  Aligned_cols=179  Identities=13%  Similarity=0.032  Sum_probs=88.2

Q ss_pred             CceEEEEECCCCceeecCCCcccccceEEEE-ECC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE
Q 040145          173 LDLVLKYEMQKNRWTVMNKMITARSFFASGV-IGG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA  250 (402)
Q Consensus       173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~  250 (402)
                      ...++++|..+++=+.+...+...  ..... -++ +|++....++    ...++.+|..++..+.+..-... ......
T Consensus       219 ~~~I~~~dl~~g~~~~l~~~~g~~--~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~w  291 (427)
T PRK02889        219 KPVVYVHDLATGRRRVVANFKGSN--SAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSSGI-DTEPFF  291 (427)
T ss_pred             CcEEEEEECCCCCEEEeecCCCCc--cceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCCCCC-CcCeEE
Confidence            347999999988755554433211  12222 233 5555443322    35788888887776665332211 111122


Q ss_pred             EECCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCCceee
Q 040145          251 VLDGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTDSWET  327 (402)
Q Consensus       251 ~~~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~~W~~  327 (402)
                      .-+|+ |++.....+    ...++.+|..++..+.+... ..........-+|+.+++....  ...++++|..+.+.+.
T Consensus       292 SpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~  366 (427)
T PRK02889        292 SPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFT-GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA  366 (427)
T ss_pred             cCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecC-CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence            23565 544432211    23688888877776665421 1111112223355544343322  2479999998887776


Q ss_pred             cCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145          328 IEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       328 ~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      +...  .   ....-....+++.+++...... ...++.++.
T Consensus       367 lt~~--~---~~~~p~~spdg~~l~~~~~~~g-~~~l~~~~~  402 (427)
T PRK02889        367 LTDT--T---RDESPSFAPNGRYILYATQQGG-RSVLAAVSS  402 (427)
T ss_pred             ccCC--C---CccCceECCCCCEEEEEEecCC-CEEEEEEEC
Confidence            6421  1   1112233446665555543322 234555553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=86.52  E-value=29  Score=32.60  Aligned_cols=134  Identities=20%  Similarity=0.177  Sum_probs=73.1

Q ss_pred             CceEEEEECCCCce-eecCCCcccccceEEEEE---CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCccee
Q 040145          173 LDLVLKYEMQKNRW-TVMNKMITARSFFASGVI---GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYD  248 (402)
Q Consensus       173 ~~~~~~~d~~t~~W-~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~  248 (402)
                      .+++.+.|..|++- .+++.   ....|.....   +..+|+.+.       ...+.++|+.+.+  .+...+......+
T Consensus        15 ~~~v~viD~~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~~r-------dg~vsviD~~~~~--~v~~i~~G~~~~~   82 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPT---GGAPHAGLKFSPDGRYLYVANR-------DGTVSVIDLATGK--VVATIKVGGNPRG   82 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE----STTEEEEEE-TT-SSEEEEEET-------TSEEEEEETTSSS--EEEEEE-SSEEEE
T ss_pred             CCEEEEEECCCCeEEEEEcC---CCCceeEEEecCCCCEEEEEcC-------CCeEEEEECCccc--EEEEEecCCCcce
Confidence            44899999988752 33332   2222444333   357888863       3468999999987  3444444444344


Q ss_pred             EEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCe-eecccc-c----cCCCceeE-EEECCEEEEEeccCCcEEEEEeC
Q 040145          249 AAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVG-L----REGWTGSS-VVVYEHLFVVSELERMKLKVYDP  320 (402)
Q Consensus       249 ~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~-~----~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~  320 (402)
                      .++ -+|+..+.+.+.     .+.+.++|.++.+= ..++.. .    +..+..+. ....+..|++.-.+...++..|.
T Consensus        83 i~~s~DG~~~~v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy  157 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY  157 (369)
T ss_dssp             EEE--TTTEEEEEEEE-----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred             EEEcCCCCEEEEEecC-----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence            333 477765555542     34788999887643 233321 1    12233223 23456667777666789999997


Q ss_pred             CCC
Q 040145          321 STD  323 (402)
Q Consensus       321 ~~~  323 (402)
                      ...
T Consensus       158 ~d~  160 (369)
T PF02239_consen  158 SDP  160 (369)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            654

...

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.21  E-value=34  Score=33.17  Aligned_cols=150  Identities=13%  Similarity=0.144  Sum_probs=76.8

Q ss_pred             EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEE
Q 040145          150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      ++.+...+.+++.|+.+       ..+.++|..+++-.+  .+......-+.+.  -++.+++.+..      ...+.+|
T Consensus       251 ~~~f~p~g~~i~Sgs~D-------~tvriWd~~~~~~~~--~l~~hs~~is~~~f~~d~~~l~s~s~------d~~i~vw  315 (456)
T KOG0266|consen  251 SVAFSPDGNLLVSGSDD-------GTVRIWDVRTGECVR--KLKGHSDGISGLAFSPDGNLLVSASY------DGTIRVW  315 (456)
T ss_pred             EEEecCCCCEEEEecCC-------CcEEEEeccCCeEEE--eeeccCCceEEEEECCCCCEEEEcCC------CccEEEE
Confidence            33333456888888873       279999999854322  1221222222222  35677777754      3457899


Q ss_pred             cCCCCcEE---EcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCC----eeeccccccCCCceeEE
Q 040145          228 DPVKGNWR---TIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDN----WESMAVGLREGWTGSSV  298 (402)
Q Consensus       228 d~~t~~W~---~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~----W~~~~~~~~~~~~~~~~  298 (402)
                      |..++.-.   .+.....+. ....+..  +++..+.+..+      +.+-.||+....    |...... ....+...-
T Consensus       316 d~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d------~~~~~w~l~~~~~~~~~~~~~~~-~~~~~~~~~  387 (456)
T KOG0266|consen  316 DLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLD------RTLKLWDLRSGKSVGTYTGHSNL-VRCIFSPTL  387 (456)
T ss_pred             ECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCC------CeEEEEEccCCcceeeecccCCc-ceeEecccc
Confidence            99987732   333333332 2223322  44444444322      256667776543    2222221 001111111


Q ss_pred             EECCEEEEEeccCCcEEEEEeCCCC
Q 040145          299 VVYEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       299 ~~~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      ..+++..+.|+. ...+..+|+.+.
T Consensus       388 ~~~~~~i~sg~~-d~~v~~~~~~s~  411 (456)
T KOG0266|consen  388 STGGKLIYSGSE-DGSVYVWDSSSG  411 (456)
T ss_pred             cCCCCeEEEEeC-CceEEEEeCCcc
Confidence            335665555554 678999999874

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=86.16  E-value=32  Score=32.79  Aligned_cols=151  Identities=11%  Similarity=0.083  Sum_probs=82.8

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR  235 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  235 (402)
                      ++.||.+.-.++     ...++--|..-+.-++-..+.  .++..-+..+++-+|+.-       -.+++.|||+|+.-+
T Consensus       235 ~~RvYFlsD~eG-----~GnlYSvdldGkDlrrHTnFt--dYY~R~~nsDGkrIvFq~-------~GdIylydP~td~le  300 (668)
T COG4946         235 GERVYFLSDHEG-----VGNLYSVDLDGKDLRRHTNFT--DYYPRNANSDGKRIVFQN-------AGDIYLYDPETDSLE  300 (668)
T ss_pred             cceEEEEecccC-----ccceEEeccCCchhhhcCCch--hccccccCCCCcEEEEec-------CCcEEEeCCCcCcce
Confidence            899999876643     346777777665544433322  122222334555444432       246899999999988


Q ss_pred             EcC-CCCCCCcce------------eEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECC
Q 040145          236 TIA-SMGTNMASY------------DAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE  302 (402)
Q Consensus       236 ~~~-~~~~~~~~~------------~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  302 (402)
                      ++. .+|..|..-            --++.+|.++.+-...       ...++++-.+---+++.... -+. .-...++
T Consensus       301 kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-------kaFi~~~~~~~~iqv~~~~~-VrY-~r~~~~~  371 (668)
T COG4946         301 KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-------KAFIMRPWDGYSIQVGKKGG-VRY-RRIQVDP  371 (668)
T ss_pred             eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-------cEEEECCCCCeeEEcCCCCc-eEE-EEEccCC
Confidence            773 334433211            1234466665554321       45555553332222332111 111 1123445


Q ss_pred             EEEEEeccCCcEEEEEeCCCCceeecC
Q 040145          303 HLFVVSELERMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       303 ~l~~~gg~~~~~~~~yd~~~~~W~~~~  329 (402)
                      +-.++|-.++..+.+||..+..=+++.
T Consensus       372 e~~vigt~dgD~l~iyd~~~~e~kr~e  398 (668)
T COG4946         372 EGDVIGTNDGDKLGIYDKDGGEVKRIE  398 (668)
T ss_pred             cceEEeccCCceEEEEecCCceEEEee
Confidence            567777777889999999988766665

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=86.08  E-value=22  Score=30.78  Aligned_cols=165  Identities=10%  Similarity=0.085  Sum_probs=82.7

Q ss_pred             cEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEEC-CEE
Q 040145          130 CWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIG-GMI  208 (402)
Q Consensus       130 ~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~-~~i  208 (402)
                      -|+..+|+.......+.--+....+..+.|+..||-        ..++..|..+++-++.-. ....+-|+++.-+ +--
T Consensus       100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD--------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~q  170 (325)
T KOG0649|consen  100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD--------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQ  170 (325)
T ss_pred             hhhhcCccccCcccCCccceeEeccCCCcEEEecCC--------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcc
Confidence            377666665422122233334444457888888874        278899999998765321 1123445554422 222


Q ss_pred             EEEcCCCCCCCCCCeeEEEcCCCCcEEEc-C-----CCCCCCcce--eEEEECCEEEEEcccccCCccCCcEEEEeCCCC
Q 040145          209 YVAGGSSADLFELDSAEVLDPVKGNWRTI-A-----SMGTNMASY--DAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD  280 (402)
Q Consensus       209 yv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~-----~~~~~~~~~--~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~  280 (402)
                      ++.|+.+      .++-++|.+|.+=..+ .     ....|..+-  .+...+....+.||..       .+-.+++.+.
T Consensus       171 ilsG~ED------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-------~lslwhLrss  237 (325)
T KOG0649|consen  171 ILSGAED------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-------KLSLWHLRSS  237 (325)
T ss_pred             eeecCCC------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-------ceeEEeccCC
Confidence            3455553      3467788888764433 2     222332222  3334466666666632       4455555444


Q ss_pred             CeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeC
Q 040145          281 NWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDP  320 (402)
Q Consensus       281 ~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~  320 (402)
                      +=+.+   .|.+.....|.+.+...++||. ++.+..|-.
T Consensus       238 e~t~v---fpipa~v~~v~F~~d~vl~~G~-g~~v~~~~l  273 (325)
T KOG0649|consen  238 ESTCV---FPIPARVHLVDFVDDCVLIGGE-GNHVQSYTL  273 (325)
T ss_pred             CceEE---EecccceeEeeeecceEEEecc-ccceeeeee
Confidence            32222   2222222334454555555564 345555444

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=85.90  E-value=49  Score=34.69  Aligned_cols=173  Identities=14%  Similarity=0.114  Sum_probs=98.8

Q ss_pred             CceEEEEECCCCceeecCCCcccccceEEE---EEC--CEEEEEcCC----CCCCCCCCeeEEEcCCC-CcEEEcCCCCC
Q 040145          173 LDLVLKYEMQKNRWTVMNKMITARSFFASG---VIG--GMIYVAGGS----SADLFELDSAEVLDPVK-GNWRTIASMGT  242 (402)
Q Consensus       173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~---~~~--~~iyv~GG~----~~~~~~~~~~~~yd~~t-~~W~~~~~~~~  242 (402)
                      .+.+.+||..|-+-.....+...-...+..   ..+  +..|++|-.    +........+.+|.... ++-+.++++..
T Consensus       749 ~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v  828 (1096)
T KOG1897|consen  749 VSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV  828 (1096)
T ss_pred             EEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee
Confidence            445667777665433333322221222222   122  567777753    33333345677776666 66777777766


Q ss_pred             CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCC
Q 040145          243 NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPS  321 (402)
Q Consensus       243 ~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~  321 (402)
                      ...-.+.+.+||++.+-=|        ..+-.|+..+++=-.+......+-...- -+.++.|++..-.....+..|+..
T Consensus       829 ~Gav~aL~~fngkllA~In--------~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~  900 (1096)
T KOG1897|consen  829 KGAVYALVEFNGKLLAGIN--------QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD  900 (1096)
T ss_pred             ccceeehhhhCCeEEEecC--------cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence            6666677778898766333        3678888666521111111111111111 244777777555556789999999


Q ss_pred             CCceeecCCCCCCccccCCeEEEEeCCEEEEEecC
Q 040145          322 TDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRN  356 (402)
Q Consensus       322 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~  356 (402)
                      .+...+++---.|   ++..++..+++..|+.+-.
T Consensus       901 eg~f~evArD~~p---~Wmtaveil~~d~ylgae~  932 (1096)
T KOG1897|consen  901 EGNFEEVARDYNP---NWMTAVEILDDDTYLGAEN  932 (1096)
T ss_pred             CCceEEeehhhCc---cceeeEEEecCceEEeecc
Confidence            9989998842233   5666777888888876653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=85.14  E-value=27  Score=31.05  Aligned_cols=180  Identities=13%  Similarity=0.182  Sum_probs=89.6

Q ss_pred             EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCcee---ecC-CCcccccceEEEE-ECC-EEEEEcCCCCCCCCCCee
Q 040145          151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWT---VMN-KMITARSFFASGV-IGG-MIYVAGGSSADLFELDSA  224 (402)
Q Consensus       151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~---~~~-~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~  224 (402)
                      ++....+..+.+||.++       .+-+|+..+..=.   ... .++....+.+++. +++ .|+-..|       -.+.
T Consensus       103 CA~sPSg~~VAcGGLdN-------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG-------D~TC  168 (343)
T KOG0286|consen  103 CAYSPSGNFVACGGLDN-------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG-------DMTC  168 (343)
T ss_pred             EEECCCCCeEEecCcCc-------eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC-------CceE
Confidence            34445788999999853       4667887755221   111 2333344444443 444 4443333       3567


Q ss_pred             EEEcCCCCcEEEcCCCCCCCcceeE---EEECCEEEEEcccccCCccCCcEEEEeCCCCCeee-ccccccCCCceeEEEE
Q 040145          225 EVLDPVKGNWRTIASMGTNMASYDA---AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVGLREGWTGSSVVV  300 (402)
Q Consensus       225 ~~yd~~t~~W~~~~~~~~~~~~~~~---~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~  300 (402)
                      ..+|.++.+=...  +........+   ...+++.|+.||.+      .....+|.....=.. ..  -...-..+...+
T Consensus       169 alWDie~g~~~~~--f~GH~gDV~slsl~p~~~ntFvSg~cD------~~aklWD~R~~~c~qtF~--ghesDINsv~ff  238 (343)
T KOG0286|consen  169 ALWDIETGQQTQV--FHGHTGDVMSLSLSPSDGNTFVSGGCD------KSAKLWDVRSGQCVQTFE--GHESDINSVRFF  238 (343)
T ss_pred             EEEEcccceEEEE--ecCCcccEEEEecCCCCCCeEEecccc------cceeeeeccCcceeEeec--ccccccceEEEc
Confidence            7788888764332  1111111111   11277899999875      245566665542111 11  001111222223


Q ss_pred             -CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCe--EEEEeCCEEEEEecCce
Q 040145          301 -YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPF--AVNACDCRVYVVGRNLH  358 (402)
Q Consensus       301 -~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~--~~~~~~~~i~v~GG~~~  358 (402)
                       +|.-|+. |.+......||+..++=..+=  . +.....+.  ......|+|++.|+.+.
T Consensus       239 P~G~afat-GSDD~tcRlyDlRaD~~~a~y--s-~~~~~~gitSv~FS~SGRlLfagy~d~  295 (343)
T KOG0286|consen  239 PSGDAFAT-GSDDATCRLYDLRADQELAVY--S-HDSIICGITSVAFSKSGRLLFAGYDDF  295 (343)
T ss_pred             cCCCeeee-cCCCceeEEEeecCCcEEeee--c-cCcccCCceeEEEcccccEEEeeecCC
Confidence             4555554 444667888999876422221  1 11112222  23346789999986543

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=85.07  E-value=14  Score=30.09  Aligned_cols=81  Identities=15%  Similarity=0.028  Sum_probs=51.4

Q ss_pred             EEECCEEEEEeccCCc----EEEEEeCCCCce-eecCCCCCCcccc---CCeEE-EEeCCEEEEEecCceeeeEEEEecc
Q 040145          298 VVVYEHLFVVSELERM----KLKVYDPSTDSW-ETIEGPPLPEQIC---KPFAV-NACDCRVYVVGRNLHVAVGHITRLS  368 (402)
Q Consensus       298 ~~~~~~l~~~gg~~~~----~~~~yd~~~~~W-~~~~~~~~p~~~~---~~~~~-~~~~~~i~v~GG~~~~~~~~v~~~~  368 (402)
                      +.++|.+|-++.....    .|..||..+.+. ..++   +|....   ....+ ++.+++|.++--.......+||+.+
T Consensus         2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~---lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~   78 (164)
T PF07734_consen    2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP---LPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK   78 (164)
T ss_pred             EEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC---CCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence            5689999988765422    699999999999 5553   554322   12233 2337788888544444458899987


Q ss_pred             cccccCceeeeEEEEe
Q 040145          369 TSEKKWSFSVQWQVVD  384 (402)
Q Consensus       369 ~~~~~~~~~~~W~~~~  384 (402)
                      .   ......+|.++-
T Consensus        79 ~---~~~~~~SWtK~~   91 (164)
T PF07734_consen   79 K---YGYGKESWTKLF   91 (164)
T ss_pred             e---eccCcceEEEEE
Confidence            3   111266888843

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=84.28  E-value=30  Score=30.81  Aligned_cols=178  Identities=13%  Similarity=0.147  Sum_probs=82.0

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF-  198 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~-  198 (402)
                      .+-+|+..+..-....++.........+..++.+..++.|+.-.|-        ..+..+|..+++-...-.-...... 
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD--------~TCalWDie~g~~~~~f~GH~gDV~s  191 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD--------MTCALWDIETGQQTQVFHGHTGDVMS  191 (343)
T ss_pred             eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC--------ceEEEEEcccceEEEEecCCcccEEE
Confidence            3667887755332221111000011134455555445555554332        2677889888764331110000000 


Q ss_pred             eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEe
Q 040145          199 FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYD  276 (402)
Q Consensus       199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd  276 (402)
                      ......+.+.|+.||++.      ...++|.....-.  ..++..-....++.+  +|.-++.|..+      ..+-.||
T Consensus       192 lsl~p~~~ntFvSg~cD~------~aklWD~R~~~c~--qtF~ghesDINsv~ffP~G~afatGSDD------~tcRlyD  257 (343)
T KOG0286|consen  192 LSLSPSDGNTFVSGGCDK------SAKLWDVRSGQCV--QTFEGHESDINSVRFFPSGDAFATGSDD------ATCRLYD  257 (343)
T ss_pred             EecCCCCCCeEEeccccc------ceeeeeccCccee--EeecccccccceEEEccCCCeeeecCCC------ceeEEEe
Confidence            011112678999999843      3456676655321  222222222223322  55555555432      2577899


Q ss_pred             CCCCCeeec-cc-cccCCCceeEEEECCEEEEEeccCCcEEEEEeC
Q 040145          277 PSTDNWESM-AV-GLREGWTGSSVVVYEHLFVVSELERMKLKVYDP  320 (402)
Q Consensus       277 ~~~~~W~~~-~~-~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~  320 (402)
                      +..++=-.+ .. ....+.........|+|+..|. +...+.++|.
T Consensus       258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDt  302 (343)
T KOG0286|consen  258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDT  302 (343)
T ss_pred             ecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeec
Confidence            887652222 11 1111212222345788877664 4444555444

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=83.57  E-value=33  Score=30.73  Aligned_cols=108  Identities=18%  Similarity=0.322  Sum_probs=68.2

Q ss_pred             CcEEEEeCCCCC----eeeccccccCCCceeE--EE---ECCEEEEEe--ccCCcEEEEEeCCCCceeecCCCCCCcccc
Q 040145          270 PRGQVYDPSTDN----WESMAVGLREGWTGSS--VV---VYEHLFVVS--ELERMKLKVYDPSTDSWETIEGPPLPEQIC  338 (402)
Q Consensus       270 ~~~~~yd~~~~~----W~~~~~~~~~~~~~~~--~~---~~~~l~~~g--g~~~~~~~~yd~~~~~W~~~~~~~~p~~~~  338 (402)
                      +.+..||.++++    |.+--. -+..|.+-.  ..   ++++||+.-  |+..-.+|..|..+..-+.+...|.+    
T Consensus        78 SHVH~yd~e~~~VrLLWkesih-~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~----  152 (339)
T PF09910_consen   78 SHVHEYDTENDSVRLLWKESIH-DKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSL----  152 (339)
T ss_pred             ceEEEEEcCCCeEEEEEecccC-CccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCc----
Confidence            357889998875    654332 345555543  22   368888874  33355788889888887777643332    


Q ss_pred             CCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeE--EEEeCCCCCCC
Q 040145          339 KPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQW--QVVDAPDNFSD  391 (402)
Q Consensus       339 ~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W--~~~~~~~~~~~  391 (402)
                        -++...|...|-+ -........+.++|..+.      .|  +..+.+.+..+
T Consensus       153 --KG~~~~D~a~F~i-~~~~~g~~~i~~~Dli~~------~~~~e~f~~~~s~Dg  198 (339)
T PF09910_consen  153 --KGTLVHDYACFGI-NNFHKGVSGIHCLDLISG------KWVIESFDVSLSVDG  198 (339)
T ss_pred             --CceEeeeeEEEec-cccccCCceEEEEEccCC------eEEEEecccccCCCC
Confidence              3455556666655 444666788999998888      55  55555554444

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=83.55  E-value=33  Score=30.73  Aligned_cols=141  Identities=17%  Similarity=0.100  Sum_probs=80.1

Q ss_pred             CCCceEEEEECCCCc----eeecCCCcccccceEEE-E---ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCC
Q 040145          171 CPLDLVLKYEMQKNR----WTVMNKMITARSFFASG-V---IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGT  242 (402)
Q Consensus       171 ~~~~~~~~~d~~t~~----W~~~~~~~~~r~~~~~~-~---~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~  242 (402)
                      +..+.+..||..+++    |++--.-+....+-..- .   +++.||+.-+-.. .  ...++..|..++.-+.+.+-|.
T Consensus        75 NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh-~--nLGvy~ldr~~g~~~~L~~~ps  151 (339)
T PF09910_consen   75 NKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGH-A--NLGVYSLDRRTGKAEKLSSNPS  151 (339)
T ss_pred             eccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCc-c--eeeeEEEcccCCceeeccCCCC
Confidence            345688899999886    55532222111111111 1   3577877754221 1  4567888888888887766555


Q ss_pred             CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCe--eeccccc-------cCCCceeEEEECCEEEEEeccCCc
Q 040145          243 NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW--ESMAVGL-------REGWTGSSVVVYEHLFVVSELERM  313 (402)
Q Consensus       243 ~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W--~~~~~~~-------~~~~~~~~~~~~~~l~~~gg~~~~  313 (402)
                      ..   ...+.+...|-+   ..-....+.+.+||+.+++|  +..+...       -.+..+..+...+++|.|-+-   
T Consensus       152 ~K---G~~~~D~a~F~i---~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG---  222 (339)
T PF09910_consen  152 LK---GTLVHDYACFGI---NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG---  222 (339)
T ss_pred             cC---ceEeeeeEEEec---cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEec---
Confidence            42   222333333322   22223346899999999999  5443211       112344456778888877332   


Q ss_pred             EEEEEeCCCC
Q 040145          314 KLKVYDPSTD  323 (402)
Q Consensus       314 ~~~~yd~~~~  323 (402)
                      .+.+.||...
T Consensus       223 Gi~vgnP~~~  232 (339)
T PF09910_consen  223 GIFVGNPYNG  232 (339)
T ss_pred             cEEEeCCCCC
Confidence            4788888743

>PRK02889 tolB translocation protein TolB; Provisional

Probab=83.05  E-value=45  Score=31.97  Aligned_cols=147  Identities=11%  Similarity=-0.103  Sum_probs=71.1

Q ss_pred             CceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145          173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL  252 (402)
Q Consensus       173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~  252 (402)
                      ...++++|.....-+.+..-...-.......-+.+|+...-.++    ...++++|..+++=+.+...+... ......-
T Consensus       175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~----~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SP  249 (427)
T PRK02889        175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESK----KPVVYVHDLATGRRRVVANFKGSN-SAPAWSP  249 (427)
T ss_pred             ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCC----CcEEEEEECCCCCEEEeecCCCCc-cceEECC
Confidence            45788888865444443221111111111111234444332111    356899999887655554433211 1112222


Q ss_pred             CC-EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEecc--CCcEEEEEeCCCCceeecC
Q 040145          253 DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSEL--ERMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       253 ~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~--~~~~~~~yd~~~~~W~~~~  329 (402)
                      +| +|++.....+    ...++.+|..++....+.... .........-+|+.+++...  +...++.+|..+...+.+.
T Consensus       250 DG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt  324 (427)
T PRK02889        250 DGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT  324 (427)
T ss_pred             CCCEEEEEEccCC----CceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence            55 4544433221    247889998877766654311 11111222335554343322  1357888888777766654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=82.76  E-value=42  Score=31.40  Aligned_cols=233  Identities=15%  Similarity=0.120  Sum_probs=117.0

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE  180 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d  180 (402)
                      .++.+|+...+.     .++.+|+.+.+  |..........    ..-....  .+|+||+-...        ..+++||
T Consensus        67 ~dg~v~~~~~~G-----~i~A~d~~~g~~~W~~~~~~~~~~----~~~~~~~--~~G~i~~g~~~--------g~~y~ld  127 (370)
T COG1520          67 GDGTVYVGTRDG-----NIFALNPDTGLVKWSYPLLGAVAQ----LSGPILG--SDGKIYVGSWD--------GKLYALD  127 (370)
T ss_pred             eCCeEEEecCCC-----cEEEEeCCCCcEEecccCcCccee----ccCceEE--eCCeEEEeccc--------ceEEEEE
Confidence            467777762111     58899999887  86533210000    1111122  26777765432        1799999


Q ss_pred             CCCC--ceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCC-CCCCcceeEEEECCE
Q 040145          181 MQKN--RWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASM-GTNMASYDAAVLDGK  255 (402)
Q Consensus       181 ~~t~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~-~~~~~~~~~~~~~g~  255 (402)
                      ..++  .|+.--... .+..-..+..++.+|+...       ...++.+|..+++  |+.-.+. ...+.....+..++.
T Consensus       128 ~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~-------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~  199 (370)
T COG1520         128 ASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGTD-------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT  199 (370)
T ss_pred             CCCCcEEEEEecCCC-eEEecCcEEcCcEEEEecC-------CCeEEEEEccCCcEEEEEecCCccccccccCceeecce
Confidence            9776  477643331 3333334455667776641       4567888888654  8743322 122222222356777


Q ss_pred             EEEEcccccCCccCCcEEEEeCCCC--Ceeeccc-ccc-------CCCceeEEEECCEEEEEeccCCcEEEEEeCCCC--
Q 040145          256 LLVTEGWLWPFFVSPRGQVYDPSTD--NWESMAV-GLR-------EGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD--  323 (402)
Q Consensus       256 ly~~gG~~~~~~~~~~~~~yd~~~~--~W~~~~~-~~~-------~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~--  323 (402)
                      +|+....    . ...++.+|+.++  .|+.-.. ...       .......+..++.+|....  ...+..+|..+.  
T Consensus       200 vy~~~~~----~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~--~g~~~~l~~~~G~~  272 (370)
T COG1520         200 VYVGSDG----Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSY--GGKLLCLDADTGEL  272 (370)
T ss_pred             EEEecCC----C-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEec--CCeEEEEEcCCCce
Confidence            7775332    1 126899999766  5874211 011       1111222445555544322  334777776543  


Q ss_pred             ceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee-eeEEEEeccc
Q 040145          324 SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV-AVGHITRLST  369 (402)
Q Consensus       324 ~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~-~~~~v~~~~~  369 (402)
                      .|+.-..................+|++|+....... ....++.++.
T Consensus       273 ~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~  319 (370)
T COG1520         273 IWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALAD  319 (370)
T ss_pred             EEEEecccEeccCCeeEEeecCCCccEEEEEeccccccccceEEEec
Confidence            577644200111001112222347888887653322 3455666654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=81.80  E-value=42  Score=30.78  Aligned_cols=184  Identities=15%  Similarity=0.114  Sum_probs=98.1

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      +..+.+-||.    ....++++..+..|.-.  +..-.    .+-.++.+.+++.+++.|+..       ..+.++...|
T Consensus        75 ~~~l~aTGGg----DD~AflW~~~~ge~~~e--ltgHK----DSVt~~~FshdgtlLATGdms-------G~v~v~~~st  137 (399)
T KOG0296|consen   75 NNNLVATGGG----DDLAFLWDISTGEFAGE--LTGHK----DSVTCCSFSHDGTLLATGDMS-------GKVLVFKVST  137 (399)
T ss_pred             CCceEEecCC----CceEEEEEccCCcceeE--ecCCC----CceEEEEEccCceEEEecCCC-------ccEEEEEccc
Confidence            4444454433    23368899988885321  22111    345566666788899999873       3688888888


Q ss_pred             C--ceeecCCCccc--ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEE
Q 040145          184 N--RWTVMNKMITA--RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVT  259 (402)
Q Consensus       184 ~--~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~  259 (402)
                      +  .|....++..-  -..|    -...|+++|..      ..++|+|....+.-.++-.-+..+..++-..-+|+..+.
T Consensus       138 g~~~~~~~~e~~dieWl~WH----p~a~illAG~~------DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  138 GGEQWKLDQEVEDIEWLKWH----PRAHILLAGST------DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             CceEEEeecccCceEEEEec----ccccEEEeecC------CCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence            7  46654322110  0000    02456667755      345788887765433331112222233333336776666


Q ss_pred             cccccCCccCCcEEEEeCCCCCe-eeccc-------cccCCCceeE---EEECCEEEEEeccCCcEEEEEeC
Q 040145          260 EGWLWPFFVSPRGQVYDPSTDNW-ESMAV-------GLREGWTGSS---VVVYEHLFVVSELERMKLKVYDP  320 (402)
Q Consensus       260 gG~~~~~~~~~~~~~yd~~~~~W-~~~~~-------~~~~~~~~~~---~~~~~~l~~~gg~~~~~~~~yd~  320 (402)
                      |-.+      ..+.++|+++++= ..+..       .+.....+..   +..++..+++++..+..+.+.++
T Consensus       208 gy~d------gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~  273 (399)
T KOG0296|consen  208 GYDD------GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG  273 (399)
T ss_pred             EecC------ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC
Confidence            5432      2688899988742 22221       1111111122   33466777777665666666664

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=81.80  E-value=39  Score=30.41  Aligned_cols=148  Identities=14%  Similarity=0.136  Sum_probs=78.5

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCcee-ecC---CCc--ccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcC
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWT-VMN---KMI--TARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDP  229 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~-~~~---~~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~  229 (402)
                      .+.+-++||.... .-+.+.+.+||-....-. ++.   +..  .-|..+-++++.++|||.-=.++    .....++|.
T Consensus        58 ~N~laLVGGg~~p-ky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n----~k~l~~~et  132 (346)
T KOG2111|consen   58 SNYLALVGGGSRP-KYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDN----PKLLHVIET  132 (346)
T ss_pred             hceEEEecCCCCC-CCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCC----hhheeeeec
Confidence            4566677776433 246789999994433211 111   111  11344556666777766643322    222333333


Q ss_pred             CCCcEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCee---eccccccCCCceeEEEECCEEE
Q 040145          230 VKGNWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE---SMAVGLREGWTGSSVVVYEHLF  305 (402)
Q Consensus       230 ~t~~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~---~~~~~~~~~~~~~~~~~~~~l~  305 (402)
                      ..          .|...++.+- .+..+.++-|...     -.+.+-|+...+-.   .+.. ........+...+|.+.
T Consensus       133 ~~----------NPkGlC~~~~~~~k~~LafPg~k~-----GqvQi~dL~~~~~~~p~~I~A-H~s~Iacv~Ln~~Gt~v  196 (346)
T KOG2111|consen  133 RS----------NPKGLCSLCPTSNKSLLAFPGFKT-----GQVQIVDLASTKPNAPSIINA-HDSDIACVALNLQGTLV  196 (346)
T ss_pred             cc----------CCCceEeecCCCCceEEEcCCCcc-----ceEEEEEhhhcCcCCceEEEc-ccCceeEEEEcCCccEE
Confidence            22          2222222222 2556778877642     26777787665542   1111 11122222234578888


Q ss_pred             EEeccCCcEEEEEeCCCCc
Q 040145          306 VVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       306 ~~gg~~~~~~~~yd~~~~~  324 (402)
                      ..++..+.-|.+||..+++
T Consensus       197 ATaStkGTLIRIFdt~~g~  215 (346)
T KOG2111|consen  197 ATASTKGTLIRIFDTEDGT  215 (346)
T ss_pred             EEeccCcEEEEEEEcCCCc
Confidence            8888778889999998875

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=81.79  E-value=14  Score=35.93  Aligned_cols=95  Identities=18%  Similarity=0.152  Sum_probs=54.6

Q ss_pred             ceEEEEECCCCceeecCCCcccccceEEEEEC--CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEE-------cCCCCCCC
Q 040145          174 DLVLKYEMQKNRWTVMNKMITARSFFASGVIG--GMIYVAGGSSADLFELDSAEVLDPVKGNWRT-------IASMGTNM  244 (402)
Q Consensus       174 ~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-------~~~~~~~~  244 (402)
                      .++|++|...+.|-.  |+-..-....++.++  +.++++|+.      ...|+.+|+.+.+-..       +...|..-
T Consensus       155 ~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~------~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~  226 (703)
T KOG2321|consen  155 SEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTE------DGVVEFWDPRDKSRVGTLDAASSVNSHPGGD  226 (703)
T ss_pred             cceEEEEcccccccc--ccccccccceeeeecCccceEEeccc------CceEEEecchhhhhheeeecccccCCCcccc
Confidence            489999999998744  332222222333333  568888886      5678999998765221       22233322


Q ss_pred             cc--eeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCC
Q 040145          245 AS--YDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDN  281 (402)
Q Consensus       245 ~~--~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~  281 (402)
                      ..  .++..+ |+-|-+.-|..     .-.+++||+.+.+
T Consensus       227 ~~~svTal~F~d~gL~~aVGts-----~G~v~iyDLRa~~  261 (703)
T KOG2321|consen  227 AAPSVTALKFRDDGLHVAVGTS-----TGSVLIYDLRASK  261 (703)
T ss_pred             ccCcceEEEecCCceeEEeecc-----CCcEEEEEcccCC
Confidence            22  233334 43565554432     2368999997765

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=81.09  E-value=31  Score=29.95  Aligned_cols=97  Identities=15%  Similarity=0.051  Sum_probs=51.6

Q ss_pred             EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145          151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPV  230 (402)
Q Consensus       151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~  230 (402)
                      .-+..+|.|+.+.-.        +.+-.+|+.+-.--+--.||......+. .-+..+||+||.      .-.++.||..
T Consensus       190 lEvs~dG~ilTia~g--------ssV~Fwdaksf~~lKs~k~P~nV~SASL-~P~k~~fVaGge------d~~~~kfDy~  254 (334)
T KOG0278|consen  190 LEVSQDGRILTIAYG--------SSVKFWDAKSFGLLKSYKMPCNVESASL-HPKKEFFVAGGE------DFKVYKFDYN  254 (334)
T ss_pred             eeeccCCCEEEEecC--------ceeEEeccccccceeeccCccccccccc-cCCCceEEecCc------ceEEEEEecc
Confidence            333347777766421        2577778776432222234432211111 124478999997      3457888888


Q ss_pred             CCcEEEcCCCCCCCcceeEE-E--ECCEEEEEccccc
Q 040145          231 KGNWRTIASMGTNMASYDAA-V--LDGKLLVTEGWLW  264 (402)
Q Consensus       231 t~~W~~~~~~~~~~~~~~~~-~--~~g~ly~~gG~~~  264 (402)
                      |+.  ++........+..-+ .  -+|.+|..|..++
T Consensus       255 Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG  289 (334)
T KOG0278|consen  255 TGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDG  289 (334)
T ss_pred             CCc--eeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence            875  333322222222222 2  2899999988653

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=80.92  E-value=49  Score=30.95  Aligned_cols=95  Identities=11%  Similarity=0.096  Sum_probs=53.7

Q ss_pred             CCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCC-----CCCC--CcceeEEEECCE
Q 040145          183 KNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS-----MGTN--MASYDAAVLDGK  255 (402)
Q Consensus       183 t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~-----~~~~--~~~~~~~~~~g~  255 (402)
                      .+.|+.+..  .....--++.++|++|++.-       ...++++|..-. -.++..     +...  ....-.+...|+
T Consensus       189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~-------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~Gd  258 (373)
T PLN03215        189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS-------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGE  258 (373)
T ss_pred             CCeeeEccC--CCceeeEEEEECCEEEEEcC-------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCE
Confidence            488999864  23335577889999999932       344666664311 112211     1111  122335667888


Q ss_pred             EEEEcccccCC-----------ccCC--cEEEEeCCCCCeeeccc
Q 040145          256 LLVTEGWLWPF-----------FVSP--RGQVYDPSTDNWESMAV  287 (402)
Q Consensus       256 ly~~gG~~~~~-----------~~~~--~~~~yd~~~~~W~~~~~  287 (402)
                      ||++.......           ....  .++..|.+..+|.++..
T Consensus       259 LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~s  303 (373)
T PLN03215        259 LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKT  303 (373)
T ss_pred             EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecc
Confidence            99887642111           0111  34555777889999876

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=80.89  E-value=52  Score=31.23  Aligned_cols=197  Identities=12%  Similarity=0.105  Sum_probs=94.9

Q ss_pred             CCcEEeCCCCCCCCCCCCCCceEEEE--ccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCC-C-c-ccc--cceE
Q 040145          128 HYCWHTIPAMPCKDKVCPHGFRCVSI--PREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK-M-I-TAR--SFFA  200 (402)
Q Consensus       128 ~~~W~~l~~~~~~~~~~~~~~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~-~-~-~~r--~~~~  200 (402)
                      -.+|+.+. .|...   ...+-.+.+  ...+.-+++|-..        .+..=+=.-++|+.... . . ...  ....
T Consensus        74 G~~W~q~~-~p~~~---~~~L~~V~F~~~d~~~GwAVG~~G--------~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~  141 (398)
T PLN00033         74 SSEWEQVD-LPIDP---GVVLLDIAFVPDDPTHGFLLGTRQ--------TLLETKDGGKTWVPRSIPSAEDEDFNYRFNS  141 (398)
T ss_pred             CCccEEee-cCCCC---CCceEEEEeccCCCCEEEEEcCCC--------EEEEEcCCCCCceECccCcccccccccceee
Confidence            45688764 33211   012333333  2345777777531        22222222347887531 1 1 111  2334


Q ss_pred             EEEECCEEEEEcCCCCCCCCCCeeEEEcCC--CCcEEEcCCCCC-CCcceeEEEE-CCEEEEEcccccCCccCCcEEEEe
Q 040145          201 SGVIGGMIYVAGGSSADLFELDSAEVLDPV--KGNWRTIASMGT-NMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYD  276 (402)
Q Consensus       201 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~--t~~W~~~~~~~~-~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd  276 (402)
                      +...++..|++|-.       .  .+|-..  -.+|+.++..+. +........+ ++..+++|...       .+++-+
T Consensus       142 v~f~~~~g~~vG~~-------G--~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~G-------~v~~S~  205 (398)
T PLN00033        142 ISFKGKEGWIIGKP-------A--ILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDEG-------AIYVTS  205 (398)
T ss_pred             eEEECCEEEEEcCc-------e--EEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEeccc-------eEEEEC
Confidence            55567788888642       1  333333  357998754321 1122233334 45577776432       345555


Q ss_pred             CCCCCeeecccc-----ccC----------CCce---e-EEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccc
Q 040145          277 PSTDNWESMAVG-----LRE----------GWTG---S-SVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQI  337 (402)
Q Consensus       277 ~~~~~W~~~~~~-----~~~----------~~~~---~-~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~  337 (402)
                      -.-.+|+.+..+     +..          .+.+   . ...-++.++++|-. ++-+...|.....|+.+.   .+...
T Consensus       206 D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W~~~~---~~~~~  281 (398)
T PLN00033        206 NAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR-GNFYLTWEPGQPYWQPHN---RASAR  281 (398)
T ss_pred             CCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC-ccEEEecCCCCcceEEec---CCCcc
Confidence            455689986221     110          0111   1 12235667777543 333444555555699886   33322


Q ss_pred             cCCeEEEEeCCEEEEEecC
Q 040145          338 CKPFAVNACDCRVYVVGRN  356 (402)
Q Consensus       338 ~~~~~~~~~~~~i~v~GG~  356 (402)
                      +........++.++++|..
T Consensus       282 ~l~~v~~~~dg~l~l~g~~  300 (398)
T PLN00033        282 RIQNMGWRADGGLWLLTRG  300 (398)
T ss_pred             ceeeeeEcCCCCEEEEeCC
Confidence            3333334568889988864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=80.74  E-value=37  Score=29.51  Aligned_cols=129  Identities=15%  Similarity=0.106  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE--EECCEEEEEcccccCCccCCcEEEEeCCCCCe
Q 040145          205 GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA--VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW  282 (402)
Q Consensus       205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~--~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W  282 (402)
                      +.+.++++|       ...+-.||..++.=..+...-.......++  -++|+....||.++      .+-++|+..-.=
T Consensus        51 dk~~LAaa~-------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg------t~kIWdlR~~~~  117 (311)
T KOG0315|consen   51 DKKDLAAAG-------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG------TVKIWDLRSLSC  117 (311)
T ss_pred             Ccchhhhcc-------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc------eEEEEeccCccc
Confidence            345555555       456888999876522222222222333343  34899888888653      466677655211


Q ss_pred             eeccccccCCCceeEEEE---CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccC-CeEEEEeCCEEEEEe
Q 040145          283 ESMAVGLREGWTGSSVVV---YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICK-PFAVNACDCRVYVVG  354 (402)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~-~~~~~~~~~~i~v~G  354 (402)
                      .+.   ......--.+++   ++.|++  |.....|+++|..++......   +|+..-. ....+..+|+.++.+
T Consensus       118 qR~---~~~~spVn~vvlhpnQteLis--~dqsg~irvWDl~~~~c~~~l---iPe~~~~i~sl~v~~dgsml~a~  185 (311)
T KOG0315|consen  118 QRN---YQHNSPVNTVVLHPNQTELIS--GDQSGNIRVWDLGENSCTHEL---IPEDDTSIQSLTVMPDGSMLAAA  185 (311)
T ss_pred             chh---ccCCCCcceEEecCCcceEEe--ecCCCcEEEEEccCCcccccc---CCCCCcceeeEEEcCCCcEEEEe
Confidence            111   111100011222   344443  444668999999999766543   4432222 122334456555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	402
2vpj_A	301	Crystal Structure Of The Kelch Domain Of Human Klhl		2e-08
2xn4_A	302	Crystal Structure Of The Kelch Domain Of Human Klhl		3e-08
2xn4_A	302	Crystal Structure Of The Kelch Domain Of Human Klhl		5e-05
2woz_A	318	The Novel Beta-Propeller Of The Btb-Kelch Protein K		4e-07
3ii7_A	306	Crystal Structure Of The Kelch Domain Of Human Klhl		5e-07
2dyh_A	318	Crystal Structure Of The Keap1 Protein In Complexed		4e-06
1x2j_A	316	Structural Basis For The Defects Of Human Lung Canc		4e-06
1u6d_X	308	Crystal Structure Of The Kelch Domain Of Human Keap		4e-06
3vng_A	309	Crystal Structure Of Keap1 In Complex With Syntheti		5e-06
4asc_A	315	Crystal Structure Of The Kelch Domain Of Human Kbtb		1e-04
1zgk_A	308	1.35 Angstrom Structure Of The Kelch Domain Of Keap		2e-04

>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 31/212 (14%)
Query: 159 LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADL 218
           L V GG  S    P+D+V KY+ +   W+ +  +   R + AS  +   IYV GG     
Sbjct: 17  LLVVGGFGSQ-QSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDG-R 74
Query: 219 FELDSAEVLDPV---KGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRG--- 272
             L S E LD      G W ++A M        A  L   + V+ G    F  S R    
Sbjct: 75  SRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGG----FDGSRRHTSM 130
Query: 273 QVYDPSTDNWESMAVGLREGWTGSSVVV----------YEHLFVVSELERMKLKVYDPST 322
           + YDP+ D W SM   ++    G+ +VV          Y+ L +++ +E+     YDP T
Sbjct: 131 ERYDPNIDQW-SMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEK-----YDPHT 184
Query: 323 DSWETIEGPPLPEQICKPFAVNACDCRVYVVG 354
             W  +   P+  +      V   +  +YVVG
Sbjct: 185 GHWTNV--TPMATKRSGA-GVALLNDHIYVVG 213

>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 100/257 (38%), Gaps = 21/257 (8%)
Query: 81  KRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQWQVLDL---THYCWHTIPAM 137
           +RWH +        +RR   G       VFA     G ++ + +D        W ++  M
Sbjct: 40  ERWHQV----AELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95
Query: 138 PCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS 197
             +D+    G   ++    G L+  GG   D    L  V  Y ++ N W  +  M T RS
Sbjct: 96  --RDRRSTLGAAVLN----GLLYAVGGF--DGSTGLSSVEAYNIKSNEWFHVAPMNTRRS 147
Query: 198 FFASGVIGGMIYVAGGSSADLFE-LDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKL 256
               GV+GG++Y  GG      + L + E  +     W  IA M T  +     VL+  L
Sbjct: 148 SVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLL 207
Query: 257 LVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVV----SELER 312
               G   P  V    +VYDP+T+ W  +A             V   L+VV         
Sbjct: 208 YAVGGHDGP-LVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNL 266
Query: 313 MKLKVYDPSTDSWETIE 329
             ++ Y+P+TD W  + 
Sbjct: 267 ASVEYYNPTTDKWTVVS 283

>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 58/229 (25%)
Query: 179 YEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA 238
           Y+ ++ RW  + ++ + R       + G+++  GG +  L  + + +  DPVK  W ++A
Sbjct: 35  YDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSL-RVRTVDSYDPVKDQWTSVA 93
Query: 239 SMGTNMASYDAAVLDGKLLVTEGWLWP----------------FFVSPRG---------- 272
           +M    ++  AAVL+G L    G+                   F V+P            
Sbjct: 94  NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV 153
Query: 273 ----------------------QVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVV--- 307
                                 + Y+ +T+ W  +A  +    +G+ V V  +L      
Sbjct: 154 VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE-MSTRRSGAGVGVLNNLLYAVGG 212
Query: 308 --SELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVG 354
               L R  ++VYDP+T++W  +    +  +     AVN     +YVVG
Sbjct: 213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGL---LYVVG 258

>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 11/195 (5%)
Query: 124 LDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK 183
           LD     W  +P +P     C  G   V    +  ++V  G     +  LD VL Y+   
Sbjct: 83  LDNVSSEWVGLPPLPSAR--CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVA 136
Query: 184 NRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG 241
            +W+ +  +      +   VI   GMIY  GG + D    +   + +P KG+W+ +A M 
Sbjct: 137 AKWSEVKNLPI--KVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK 194
Query: 242 TNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVY 301
           T  + +  A+  GK+++  G +    +S   + +D  T+ WE M    +E  + S V + 
Sbjct: 195 TPRSMFGVAIHKGKIVIA-GGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLA 253
Query: 302 EHLFVVSELERMKLK 316
             L+ +     ++L+
Sbjct: 254 GSLYAIGGFAMIQLE 268

>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7 Length = 306

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 83/212 (39%), Gaps = 13/212 (6%)
Query: 172 PLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVK 231
           P+  +  Y + K+ W       T R   A+    G IY +GGS      L   E  D   
Sbjct: 68  PIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRT 127
Query: 232 GNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPR----GQVYDPSTDNWESMAV 287
            +W T  SM T   S+     +G + V  G L    VS R     +VYDP+T+ W  +  
Sbjct: 128 ESWHTKPSMLTQRCSHGMVEANGLIYVCGGSL-GNNVSGRVLNSCEVYDPATETWTELCP 186
Query: 288 GLREGWTGSSVVVYEHLFVVSELERM----KLKVYDPSTDSWETIEGPPLPEQICKPFAV 343
            +        V V + +F V     +     ++ YD   + W+ +   P      K  AV
Sbjct: 187 MIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV 246
Query: 344 NACDCRVYVVGRNLHVA-VGHITRLSTSEKKW 374
            +    VYV+     V  +GHI   +T   KW
Sbjct: 247 GSI---VYVLAGFQGVGRLGHILEYNTETDKW 275

>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With The N-Terminal Region Of The Nrf2 Transcription Factor Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 83/196 (42%), Gaps = 11/196 (5%)
Query: 138 PCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS 197
           PC     P     V +  +G ++  GG    +      V +YE +++ W ++  M+T R 
Sbjct: 98  PCASMSVPRNRIGVGVI-DGHIYAVGGSHGCIH--HSSVERYEPERDEWHLVAPMLTRRI 154
Query: 198 FFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLL 257
                V+  ++Y  GG       L+SAE   P +  WR I  M T  +     VL   + 
Sbjct: 155 GVGVAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIY 213
Query: 258 VTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVVSELERM--- 313
              G+     ++   + YD  T+ W  +A  +R   +   + V++  ++V+   +     
Sbjct: 214 AAGGYDGQDQLNSV-ERYDVETETWTFVAP-MRHHRSALGITVHQGKIYVLGGYDGHTFL 271
Query: 314 -KLKVYDPSTDSWETI 328
             ++ YDP +D+W  +
Sbjct: 272 DSVECYDPDSDTWSEV 287

>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer Somatic Mutations In The Repression Activity Of Keap1 On Nrf2 Length = 316

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 176 VLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR 235
           V +YE +++ W ++  M+T R      V+  ++Y  GG       L+SAE   P +  WR
Sbjct: 132 VERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWR 190
Query: 236 TIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTG 295
            I  M T  +     VL   +    G+     ++   + YD  T+ W  +A  +R   + 
Sbjct: 191 MITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSV-ERYDVETETWTFVAP-MRHHRSA 248
Query: 296 SSVVVYE-HLFVVSELERM----KLKVYDPSTDSWETI 328
             + V++  ++V+   +       ++ YDP +D+W  +
Sbjct: 249 LGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEV 286

>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1 Length = 308

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 18/191 (9%)
Query: 151 VSIPR--------EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASG 202
           +S+PR        +G ++  GG    +    + V +YE +++ W ++  M+T R      
Sbjct: 108 MSVPRNRIGVGVIDGHIYAVGGSHGCIH--HNSVERYEPERDEWHLVAPMLTRRIGVGVA 165
Query: 203 VIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGW 262
           V+  ++Y  GG       L+SAE   P +  WR I +M T  +     VL   +    G+
Sbjct: 166 VLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGY 224
Query: 263 LWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVVSELERM----KLKV 317
                ++   + YD  T+ W  +A  ++   +   + V++  ++V+   +       ++ 
Sbjct: 225 DGQDQLNSV-ERYDVETETWTFVAP-MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVEC 282
Query: 318 YDPSTDSWETI 328
           YDP TD+W  +
Sbjct: 283 YDPDTDTWSEV 293

>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small Molecular Based On A Co-crystallization Length = 309

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 18/191 (9%)
Query: 151 VSIPR--------EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASG 202
           +S+PR        +G ++  GG    +    + V +YE +++ W ++  M+T R      
Sbjct: 109 MSVPRNRIGVGVIDGHIYAVGGSHGCIH--HNSVERYEPERDEWHLVAPMLTRRIGVGVA 166
Query: 203 VIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGW 262
           V+  ++Y  GG       L+SAE   P +  WR I +M T  +     VL   +    G+
Sbjct: 167 VLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGY 225
Query: 263 LWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVVSELERM----KLKV 317
                ++   + YD  T+ W  +A  ++   +   + V++  ++V+   +       ++ 
Sbjct: 226 DGQDQLNSV-ERYDVETETWTFVAP-MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVEC 283
Query: 318 YDPSTDSWETI 328
           YDP TD+W  +
Sbjct: 284 YDPDTDTWSEV 294

>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5 Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 158 TLFVCGGM-VSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGM--IYVAGGS 214
           +++V GG  + D +  LD V+ Y+    +W   + +      +   V+  M  +YV GG 
Sbjct: 100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL--PYVVYGHTVLSHMDLVYVIGGK 157
Query: 215 SADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQV 274
            +D   L+   V DP K  W+ +A M T  + + A V DG+++V  G +    ++   +V
Sbjct: 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAG-VTDTGLTSSAEV 216
Query: 275 YDPSTDNW 282
           Y  + + W
Sbjct: 217 YSITDNKW 224

>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1 Length = 308

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 77/195 (39%), Gaps = 9/195 (4%)
Query: 138 PCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS 197
           PC     P     V +  +G ++  GG    +    + V +YE +++ W ++   +T R 
Sbjct: 104 PCAPXSVPRNRIGVGVI-DGHIYAVGGSHGCIH--HNSVERYEPERDEWHLVAPXLTRRI 160
Query: 198 FFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLL 257
                V+  ++Y  GG       L+SAE   P +  WR I +  T  +     VL   + 
Sbjct: 161 GVGVAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIY 219
Query: 258 VTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERM---- 313
              G+     ++   + YD  T+ W  +A            V    ++V+   +      
Sbjct: 220 AAGGYDGQDQLNSV-ERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLD 278
Query: 314 KLKVYDPSTDSWETI 328
            ++ YDP TD+W  +
Sbjct: 279 SVECYDPDTDTWSEV 293

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	402
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-38
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-28
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	9e-28
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-37
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	7e-32
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	9e-27
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	3e-37
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	4e-29
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-26
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-18
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-17
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	7e-36
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	1e-35
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	4e-14
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	3e-07
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-35
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-28
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-27
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-20
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	4e-18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-35
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-34
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	8e-29
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-14
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	9e-24
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	5e-18
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	5e-13
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-09
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	6e-09
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	3e-12
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-11
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	5e-10
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	4e-08
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	4e-06
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  139 bits (352), Expect = 2e-38
 Identities = 52/262 (19%), Positives = 98/262 (37%), Gaps = 20/262 (7%)

Query: 122 QVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVD--CPLDLVLKY 179
           +  + ++  W  +  +     V   G     +   G L+  GG  +  D       +  Y
Sbjct: 42  EAYNPSNGTWLRLADLQ----VPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCY 95

Query: 180 EMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS 239
               N+W+    M   R+    GVI G IY  GGS   +   +S E  +P +  W  +A 
Sbjct: 96  NPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAP 154

Query: 240 MGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV 299
           M T       AVL+  L    G+     ++   + Y P  + W  +   +    +G+ V 
Sbjct: 155 MLTRRIGVGVAVLNRLLYAVGGFDGTNRLN-SAECYYPERNEWRMIT-AMNTIRSGAGVC 212

Query: 300 VYE-HLFVV---SELERMK-LKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVV- 353
           V    ++        +++  ++ YD  T++W  +   P+  +      +     R+YV+ 
Sbjct: 213 VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV--APMKHRRSA-LGITVHQGRIYVLG 269

Query: 354 GRNLHVAVGHITRLSTSEKKWS 375
           G + H  +  +         WS
Sbjct: 270 GYDGHTFLDSVECYDPDTDTWS 291

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  112 bits (283), Expect = 1e-28
 Identities = 44/236 (18%), Positives = 74/236 (31%), Gaps = 31/236 (13%)

Query: 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSA 216
             ++  GG        L  +  Y      W  +  +   RS  A  V+GG++Y  GG + 
Sbjct: 25  RLIYTAGGYFRQ---SLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 81

Query: 217 D---LFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQ 273
                 +  + +  +P+   W   A M          V+DG +    G          G 
Sbjct: 82  SPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGS--------HGC 133

Query: 274 -------VYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVV---SELERMK-LKVYDPS 321
                   Y+P  D W  +A  +     G  V V    L+ V       R+   + Y P 
Sbjct: 134 IHHNSVERYEPERDEWHLVA-PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 192

Query: 322 TDSWETIEGPPLPEQICKPFAVNACDCRVYVV-GRNLHVAVGHITRLSTSEKKWSF 376
            + W  I    +         V      +Y   G +    +  + R     + W+F
Sbjct: 193 RNEWRMI--TAMNTIRSG-AGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTF 245

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  110 bits (277), Expect = 9e-28
 Identities = 44/170 (25%), Positives = 67/170 (39%), Gaps = 11/170 (6%)

Query: 131 WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN 190
           WH +  M  +      G     +     L+  GG   D    L+    Y  ++N W ++ 
Sbjct: 149 WHLVAPMLTR--RIGVG--VAVL--NRLLYAVGG--FDGTNRLNSAECYYPERNEWRMIT 200

Query: 191 KMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA 250
            M T RS     V+   IY AGG      +L+S E  D     W  +A M    ++    
Sbjct: 201 AMNTIRSGAGVCVLHNCIYAAGGYD-GQDQLNSVERYDVETETWTFVAPMKHRRSALGIT 259

Query: 251 VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV 300
           V  G++ V  G+    F+    + YDP TD W  +   +  G +G  V V
Sbjct: 260 VHQGRIYVLGGYDGHTFLD-SVECYDPDTDTWSEVT-RMTSGRSGVGVAV 307

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  136 bits (344), Expect = 2e-37
 Identities = 60/262 (22%), Positives = 95/262 (36%), Gaps = 22/262 (8%)

Query: 123 VLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ 182
             +   Y W  I               CV    +  +++ GG       P+  +  Y + 
Sbjct: 28  YFNPKDYSWTDIRCPF----EKRRDAACVFW--DNVVYILGGSQLF---PIKRMDCYNVV 78

Query: 183 KNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGT 242
           K+ W       T R   A+    G IY +GGS      L   E  D    +W T  SM T
Sbjct: 79  KDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT 138

Query: 243 NMASYDAAVLDGKLLVTEGWLWPFFVSPR---GQVYDPSTDNWESMAVGLREGWTGSSVV 299
              S+     +G + V  G L            +VYDP+T+ W  +   + E      +V
Sbjct: 139 QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC-PMIEARKNHGLV 197

Query: 300 VYE-HLFVV---SELERMK-LKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVV- 353
             +  +F V   + L  +  ++ YD   + W+ +   P+P +        A    VYV+ 
Sbjct: 198 FVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV--SPMPWKGVT-VKCAAVGSIVYVLA 254

Query: 354 GRNLHVAVGHITRLSTSEKKWS 375
           G      +GHI   +T   KW 
Sbjct: 255 GFQGVGRLGHILEYNTETDKWV 276

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  121 bits (306), Expect = 7e-32
 Identities = 43/237 (18%), Positives = 84/237 (35%), Gaps = 26/237 (10%)

Query: 154 PR----EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIY 209
           PR    +  + + GG              +  +   WT +      R   A      ++Y
Sbjct: 6   PRRKKHDYRIALFGG------SQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVY 59

Query: 210 VAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVS 269
           + GGS   LF +   +  + VK +W +     T   S  A   +GK+  + G        
Sbjct: 60  ILGGS--QLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSAL 117

Query: 270 PRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVV-----SELERMKLK---VYDP 320
              + YD  T++W +    +        +V     ++V      + +    L    VYDP
Sbjct: 118 YLFECYDTRTESWHTKP-SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDP 176

Query: 321 STDSWETIEGPPLPEQICKPFAVNACDCRVYVV-GRNLHVAVGHITRLSTSEKKWSF 376
           +T++W  +   P+ E   K   +     +++ V G+N    + ++        +W  
Sbjct: 177 ATETWTEL--CPMIEA-RKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM 230

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  107 bits (270), Expect = 9e-27
 Identities = 41/173 (23%), Positives = 65/173 (37%), Gaps = 10/173 (5%)

Query: 131 WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGM--VSDVDCPLDLVLKYEMQKNRWTV 188
           WHT P+M  +   C HG   V     G ++VCGG    +     L+    Y+     WT 
Sbjct: 130 WHTKPSMLTQ--RCSHG--MVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE 183

Query: 189 MNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYD 248
           +  MI AR       +   I+  GG +  L  LD+ E  D     W+ ++ M     +  
Sbjct: 184 LCPMIEARKNHGLVFVKDKIFAVGGQN-GLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK 242

Query: 249 AAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVY 301
            A +   + V  G+     +      Y+  TD W + +       T   + V 
Sbjct: 243 CAAVGSIVYVLAGFQGVGRLG-HILEYNTETDKWVANSKVRAFPVTSCLICVV 294

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  136 bits (344), Expect = 3e-37
 Identities = 57/239 (23%), Positives = 95/239 (39%), Gaps = 19/239 (7%)

Query: 122 QVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM 181
           +  D     WH +  +P            V +   G +F  GG   +    +  V  Y+ 
Sbjct: 33  ECYDFKEERWHQVAELP----SRRCRAGMVYM--AGLVFAVGG--FNGSLRVRTVDSYDP 84

Query: 182 QKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG 241
            K++WT +  M   RS   + V+ G++Y  GG       L S E  +     W  +A M 
Sbjct: 85  VKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG-LSSVEAYNIKSNEWFHVAPMN 143

Query: 242 TNMASYDAAVLDGKLLVTEGWLWPFF-VSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV 300
           T  +S    V+ G L    G+           + Y+ +T+ W  +A  +    +G+ V V
Sbjct: 144 TRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA-EMSTRRSGAGVGV 202

Query: 301 YE-HLFVV----SELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVG 354
               L+ V      L R  ++VYDP+T++W  +    +         V A +  +YVVG
Sbjct: 203 LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV--ADMNMCRRNA-GVCAVNGLLYVVG 258

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  114 bits (287), Expect = 4e-29
 Identities = 43/171 (25%), Positives = 66/171 (38%), Gaps = 8/171 (4%)

Query: 130 CWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVM 189
            W  +  M  +      G     +   G L+  GG        L  V  Y    N WT +
Sbjct: 135 EWFHVAPMNTR--RSSVG--VGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI 188

Query: 190 NKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA 249
            +M T RS    GV+  ++Y  GG         S EV DP    WR +A M     +   
Sbjct: 189 AEMSTRRSGAGVGVLNNLLYAVGGHD-GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV 247

Query: 250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV 300
             ++G L V  G      ++   + Y+P+TD W  ++  +  G + + V V
Sbjct: 248 CAVNGLLYVVGGDDGSCNLA-SVEYYNPTTDKWTVVSSCMSTGRSYAGVTV 297

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  106 bits (268), Expect = 1e-26
 Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 31/233 (13%)

Query: 159 LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADL 218
           + V GG        +  V  Y+ ++ RW  + ++ + R       + G+++  GG +  L
Sbjct: 18  MVVVGGQAPK---AIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSL 74

Query: 219 FELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQ----- 273
             + + +  DPVK  W ++A+M    ++  AAVL+G L    G+         G      
Sbjct: 75  -RVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGF--------DGSTGLSS 125

Query: 274 --VYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVV---SELERMKLK---VYDPSTDS 324
              Y+  ++ W  +A  +    +   V V    L+ V       R  L     Y+ +T+ 
Sbjct: 126 VEAYNIKSNEWFHVA-PMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE 184

Query: 325 WETIEGPPLPEQICKPFAVNACDCRVYVV-GRNLHVAVGHITRLSTSEKKWSF 376
           W  I    +  +      V   +  +Y V G +  +    +     +   W  
Sbjct: 185 WTYI--AEMSTRRSG-AGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ 234

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 84.6 bits (210), Expect = 1e-18
 Identities = 33/173 (19%), Positives = 59/173 (34%), Gaps = 22/173 (12%)

Query: 192 MITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV 251
           M           +  ++ V GG +     + S E  D  +  W  +A + +         
Sbjct: 2   MSVRTRLRTPMNLPKLMVVVGGQAPK--AIRSVECYDFKEERWHQVAELPSRRCRAGMVY 59

Query: 252 LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREG-WTGSSVVVYEHLFVV--- 307
           + G +    G+     V      YDP  D W S+A  +R+   T  + V+   L+ V   
Sbjct: 60  MAGLVFAVGGFNGSLRVR-TVDSYDPVKDQWTSVA-NMRDRRSTLGAAVLNGLLYAVGGF 117

Query: 308 ------SELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVG 354
                 S +E      Y+  ++ W  +   P+  +      V      +Y VG
Sbjct: 118 DGSTGLSSVEA-----YNIKSNEWFHV--APMNTRRSS-VGVGVVGGLLYAVG 162

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 81.9 bits (203), Expect = 1e-17
 Identities = 30/127 (23%), Positives = 43/127 (33%), Gaps = 10/127 (7%)

Query: 131 WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN 190
           W  I  M         G     +     L+  GG   D       V  Y+   N W  + 
Sbjct: 185 WTYIAEMS----TRRSGAGVGVL--NNLLYAVGG--HDGPLVRKSVEVYDPTTNAWRQVA 236

Query: 191 KMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS-MGTNMASYDA 249
            M   R       + G++YV GG       L S E  +P    W  ++S M T  +    
Sbjct: 237 DMNMCRRNAGVCAVNGLLYVVGGDDGSCN-LASVEYYNPTTDKWTVVSSCMSTGRSYAGV 295

Query: 250 AVLDGKL 256
            V+D +L
Sbjct: 296 TVIDKRL 302

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score =  132 bits (335), Expect = 7e-36
 Identities = 49/247 (19%), Positives = 84/247 (34%), Gaps = 28/247 (11%)

Query: 123 VLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMV-SDVDCPLDLVLKYEM 181
             D     W  +P +P         F         +++V GG    D +  LD V+ Y+ 
Sbjct: 71  QFDHLDSEWLGMPPLP----SPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDR 124

Query: 182 QKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG 241
              +W   + +              ++YV GG  +D   L+   V DP K  W+ +A M 
Sbjct: 125 LSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ 184

Query: 242 TNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVY 301
           T  + + A V DG+++V  G       S   +VY  + + W        +  +  S+V  
Sbjct: 185 TARSLFGATVHDGRIIVAAGVTDTGLTS-SAEVYSITDNKWAPFEA-FPQERSSLSLVSL 242

Query: 302 E-HLFVV----------SELERMKLK---VYDPSTDSWETIEGPPLPEQICKPFAVNACD 347
              L+ +           EL   +L     Y+     WE +                   
Sbjct: 243 VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV--LREIAYAA---GATFLP 297

Query: 348 CRVYVVG 354
            R+ V+ 
Sbjct: 298 VRLNVLR 304

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score =  132 bits (333), Expect = 1e-35
 Identities = 45/266 (16%), Positives = 84/266 (31%), Gaps = 30/266 (11%)

Query: 131 WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVD----CPLDLVLKYEMQKNRW 186
            +         K   +    V+   E  +FV GG+  + D          L+++   + W
Sbjct: 25  CYCASLSSQVPK---NHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79

Query: 187 TVMNKMITARSFFASGVIGGMIYVAGGSSAD--LFELDSAEVLDPVKGNWRTIASMGTNM 244
             M  + + R  F  G     IYV GG         LDS    D +   W     +   +
Sbjct: 80  LGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV 139

Query: 245 ASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-H 303
             +        + V  G         +  VYDP    W+ +A  ++   +     V++  
Sbjct: 140 YGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA-PMQTARSLFGATVHDGR 198

Query: 304 LFVV---SELERMK-LKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVG----R 355
           + V    ++       +VY  + + W        P++     ++ +    +Y +G     
Sbjct: 199 IIVAAGVTDTGLTSSAEVYSITDNKWAPF--EAFPQERSSL-SLVSLVGTLYAIGGFATL 255

Query: 356 NLHVAVGHITRLSTSE------KKWS 375
                    T L+         KKW 
Sbjct: 256 ETESGELVPTELNDIWRYNEEEKKWE 281

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 26/165 (15%), Positives = 43/165 (26%), Gaps = 26/165 (15%)

Query: 204 IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI-ASMGTNMASYDAAVLDGKLLVTEGW 262
           +  +I++           + A   DP          S             + ++ V  G 
Sbjct: 3   LQDLIFMISE--------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGL 54

Query: 263 -----LWPFFVSPRGQVYDPSTDNWESMAVGLREG-WTGSSVVVYEHLFVV----SELER 312
                     +S     +D     W  M   L               ++VV     +   
Sbjct: 55  FYNEDNKEDPMSAYFLQFDHLDSEWLGMP-PLPSPRCLFGLGEALNSIYVVGGREIKDGE 113

Query: 313 MKLK---VYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVG 354
             L     YD  +  W      PLP  +     V +    VYV+G
Sbjct: 114 RCLDSVMCYDRLSFKWGES--DPLPYVVYG-HTVLSHMDLVYVIG 155

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 15/92 (16%)

Query: 131 WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGG-------MVSDVDCPLDLVLKYEMQK 183
           W    A P            VS+   GTL+  GG           V   L+ + +Y  ++
Sbjct: 224 WAPFEAFP----QERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEE 277

Query: 184 NRWTVMNKMITARSFFASGVIGGMIYVAGGSS 215
            +W  + + I   +   +  +   + V   + 
Sbjct: 278 KKWEGVLREIAYAA--GATFLPVRLNVLRLTK 307

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  131 bits (331), Expect = 2e-35
 Identities = 55/265 (20%), Positives = 95/265 (35%), Gaps = 27/265 (10%)

Query: 122 QVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGM-----VSDVDCPLDLV 176
           +  D     W  +P++             VS+     ++V GG      +S V+C LD  
Sbjct: 34  EKYDPKTQEWSFLPSIT----RKRRYVASVSL--HDRIYVIGGYDGRSRLSSVEC-LDYT 86

Query: 177 LKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRT 236
                +   W  +  M   R    +  +G MIYV+GG         S E  DP    W  
Sbjct: 87  AD---EDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRR-HTSMERYDPNIDQWSM 142

Query: 237 IASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGS 296
           +  M T        V  G +    G+     ++   + YDP T +W ++   +    +G+
Sbjct: 143 LGDMQTAREGAGLVVASGVIYCLGGYDGLNILN-SVEKYDPHTGHWTNVT-PMATKRSGA 200

Query: 297 SVVVYE-HLFVV---SELERMK-LKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVY 351
            V +   H++VV        +  ++ Y+  TDSW T+    +    C          R+Y
Sbjct: 201 GVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV--TSMTTPRCY-VGATVLRGRLY 257

Query: 352 VV-GRNLHVAVGHITRLSTSEKKWS 375
            + G + +  +  I         W 
Sbjct: 258 AIAGYDGNSLLSSIECYDPIIDSWE 282

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  111 bits (281), Expect = 2e-28
 Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 30/236 (12%)

Query: 157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSA 216
             L V GG  S    P+D+V KY+ +   W+ +  +   R + AS  +   IYV GG   
Sbjct: 15  EVLLVVGGFGSQ-QSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDG 73

Query: 217 DLFELDSAEVLDPVK---GNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQ 273
               L S E LD      G W ++A M        A  L   + V+ G+         G 
Sbjct: 74  RS-RLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGF--------DGS 124

Query: 274 -------VYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVV---SELERMK-LKVYDPS 321
                   YDP+ D W  +   ++    G+ +VV    ++ +     L  +  ++ YDP 
Sbjct: 125 RRHTSMERYDPNIDQWSMLG-DMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPH 183

Query: 322 TDSWETIEGPPLPEQICKPFAVNACDCRVYVV-GRNLHVAVGHITRLSTSEKKWSF 376
           T  W  +   P+  +      V   +  +YVV G +    +  +   +     W+ 
Sbjct: 184 TGHWTNV--TPMATK-RSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  109 bits (275), Expect = 2e-27
 Identities = 46/170 (27%), Positives = 65/170 (38%), Gaps = 11/170 (6%)

Query: 131 WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN 190
           W  +  M         G   V     G ++  GG   D    L+ V KY+     WT + 
Sbjct: 140 WSMLGDMQTA--REGAG--LVVA--SGVIYCLGG--YDGLNILNSVEKYDPHTGHWTNVT 191

Query: 191 KMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA 250
            M T RS     ++   IYV GG       L S E  +    +W T+ SM T      A 
Sbjct: 192 PMATKRSGAGVALLNDHIYVVGGFDGTAH-LSSVEAYNIRTDSWTTVTSMTTPRCYVGAT 250

Query: 251 VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV 300
           VL G+L    G+     +S   + YDP  D+WE +   +      + V V
Sbjct: 251 VLRGRLYAIAGYDGNSLLS-SIECYDPIIDSWEVVT-SMGTQRCDAGVCV 298

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 89.3 bits (222), Expect = 3e-20
 Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 30/179 (16%)

Query: 192 MITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV 251
           M   R+    G    ++ V GG  +    +D  E  DP    W  + S+        +  
Sbjct: 2   MQGPRTRARLGA-NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS 60

Query: 252 LDGKLLVT---EGWLWPFFVSPRGQVYDPSTD---NWESMAVGLREGWTGSSVVVYE-HL 304
           L  ++ V    +G      V       D + D    W S+A  +      +        +
Sbjct: 61  LHDRIYVIGGYDGRSRLSSVE----CLDYTADEDGVWYSVA-PMNVRRGLAGATTLGDMI 115

Query: 305 FVV---------SELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVG 354
           +V          + +ER     YDP+ D W  +    +         +      +Y +G
Sbjct: 116 YVSGGFDGSRRHTSMER-----YDPNIDQWSML--GDMQTAREG-AGLVVASGVIYCLG 166

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 83.1 bits (206), Expect = 4e-18
 Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 122 QVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM 181
           +  D     W  +  M         G     +     ++V GG   D    L  V  Y +
Sbjct: 178 EKYDPHTGHWTNVTPMA----TKRSGAGVALL--NDHIYVVGG--FDGTAHLSSVEAYNI 229

Query: 182 QKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG 241
           + + WT +  M T R +  + V+ G +Y   G   +   L S E  DP+  +W  + SMG
Sbjct: 230 RTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSL-LSSIECYDPIIDSWEVVTSMG 288

Query: 242 TNMASYDAAVLD 253
           T        VL 
Sbjct: 289 TQRCDAGVCVLR 300

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  130 bits (330), Expect = 3e-35
 Identities = 43/260 (16%), Positives = 92/260 (35%), Gaps = 24/260 (9%)

Query: 127 THYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD----VDCPLDLVLKYEMQ 182
            + C+ T  A         +    V+   +  ++V GG+  D             + +  
Sbjct: 33  ENECYLTALAEQIPR----NHSSIVTQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNV 86

Query: 183 KNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFE-LDSAEVLDPVKGNWRTIASMG 241
            + W  +  + +AR  F  G +   IYV  G        LDS    DPV   W  + ++ 
Sbjct: 87  SSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP 146

Query: 242 TNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVY 301
             +  ++    +G +    G       + R  +Y+P   +W+ +A  ++   +   V ++
Sbjct: 147 IKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA-PMKTPRSMFGVAIH 205

Query: 302 E-HLFVVS-ELERMKLK---VYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVG-- 354
           +  + +     E         +D  T+ WE +     P++     ++ +    +Y +G  
Sbjct: 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM--TEFPQERSSI-SLVSLAGSLYAIGGF 262

Query: 355 --RNLHVAVGHITRLSTSEK 372
               L       T ++   K
Sbjct: 263 AMIQLESKEFAPTEVNDIWK 282

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  129 bits (325), Expect = 2e-34
 Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 27/244 (11%)

Query: 123 VLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ 182
            LD     W  +P +P         F    +  +  ++V  G     +  LD VL Y+  
Sbjct: 82  QLDNVSSEWVGLPPLP----SARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPV 135

Query: 183 KNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGT 242
             +W+ +  +             GMIY  GG + D    +   + +P KG+W+ +A M T
Sbjct: 136 AAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT 195

Query: 243 NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE 302
             + +  A+  GK+++  G       +   + +D  T+ WE M     +  +  S+V   
Sbjct: 196 PRSMFGVAIHKGKIVIAGGVTEDGLSA-SVEAFDLKTNKWEVMTE-FPQERSSISLVSLA 253

Query: 303 -HLFVV----------SELERMKLK---VYDPSTDSWETIEGPPLPEQICKPFAVNACDC 348
             L+ +           E    ++     Y+     W  +               +    
Sbjct: 254 GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYAS---GASCLAT 308

Query: 349 RVYV 352
           R+ +
Sbjct: 309 RLNL 312

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  113 bits (285), Expect = 8e-29
 Identities = 45/190 (23%), Positives = 66/190 (34%), Gaps = 18/190 (9%)

Query: 130 CWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVM 189
            W  +  +P K  V  H    +S    G ++  GG   D  C  + V  Y  +K  W  +
Sbjct: 138 KWSEVKNLPIK--VYGHN--VISH--NGMIYCLGGKTDDKKC-TNRVFIYNPKKGDWKDL 190

Query: 190 NKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA 249
             M T RS F   +  G I +AGG + D     S E  D     W  +       +S   
Sbjct: 191 APMKTPRSMFGVAIHKGKIVIAGGVTEDGL-SASVEAFDLKTNKWEVMTEFPQERSSISL 249

Query: 250 AVLDGKLLVTEGWLWPFFVSPRG--------QVYDPSTDNWESMAVGLREGWTGSSVVVY 301
             L G L    G+      S             Y+     W  M        +G+S +  
Sbjct: 250 VSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGML-KEIRYASGASCLAT 308

Query: 302 E-HLFVVSEL 310
             +LF +S+L
Sbjct: 309 RLNLFKLSKL 318

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 21/167 (12%), Positives = 46/167 (27%), Gaps = 25/167 (14%)

Query: 201 SGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA-SMGTNMASYDAAVLDGKLLV- 258
              +  +I +   +        +A   DP++      A +               ++ V 
Sbjct: 11  GMFVKDLILLVNDT--------AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVV 62

Query: 259 ----TEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVV---SEL 310
                +       +       D  +  W  +   L        +   +  ++VV      
Sbjct: 63  GGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP-PLPSARCLFGLGEVDDKIYVVAGKDLQ 121

Query: 311 ERMKLK---VYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVG 354
               L     YDP    W  +    LP ++     V + +  +Y +G
Sbjct: 122 TEASLDSVLCYDPVAAKWSEV--KNLPIKVYG-HNVISHNGMIYCLG 165

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score =  100 bits (250), Expect = 9e-24
 Identities = 41/247 (16%), Positives = 79/247 (31%), Gaps = 39/247 (15%)

Query: 124 LDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDC---PLDLVLKYE 180
                  W  + A P   +          I  +G L+V GG+  + +      + V KY 
Sbjct: 38  TQAKDKKWTALAAFPGGPR---DQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYN 92

Query: 181 MQKNRWT-VMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS 239
            + N W  +M+      +   + V  G  YV GG + ++F     E L+    +   I  
Sbjct: 93  PKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIF-NGYFEDLNEAGKDSTAIDK 151

Query: 240 MGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV 299
           +  +     A                +F +     +DPST  W         G  G++VV
Sbjct: 152 INAHYFDKKAED--------------YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVV 197

Query: 300 VYE-HLFVVS----------ELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDC 348
                 ++++           +  +    +  +   W  +     P+ +   FA    + 
Sbjct: 198 NKGDKTWLINGEAKPGLRTDAVFELD---FTGNNLKWNKLAPVSSPDGVAGGFAG-ISND 253

Query: 349 RVYVVGR 355
            +   G 
Sbjct: 254 SLIFAGG 260

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 83.5 bits (206), Expect = 5e-18
 Identities = 31/213 (14%), Positives = 60/213 (28%), Gaps = 51/213 (23%)

Query: 187 TVMNKMITARSFFASGVIGGMIYVAGGS-SADLFELDSAEVLDPVKGNWRTIASM-GTNM 244
           +V+ +           +    +Y+  GS     ++LD           W  +A+  G   
Sbjct: 1   SVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLD----TQAKDKKWTALAAFPGGPR 56

Query: 245 ASYDAAVLDGKLLVTEGWLWPFFVSPR----GQVYDPSTDNWESMAVGLREGWTGSSVVV 300
               +A +DG L V  G         +       Y+P T++W  +      G  G    V
Sbjct: 57  DQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV 116

Query: 301 YE-HLFVV----------------------SELERMKLK----------------VYDPS 321
           +    +V                       + ++++                    +DPS
Sbjct: 117 HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176

Query: 322 TDSWETIEGPPLPEQICKPFAVNACDCRVYVVG 354
           T  W        P       AV     + +++ 
Sbjct: 177 TQQWSYA--GESPWYGTAGAAVVNKGDKTWLIN 207

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 68.8 bits (168), Expect = 5e-13
 Identities = 24/209 (11%), Positives = 59/209 (28%), Gaps = 37/209 (17%)

Query: 174 DLVLKYEMQKNRWTVMNKM-ITARSFFASGVIGGMIYVAGGSSADLFELDSAEVL--DPV 230
             +L ++    +W+   +      +  A    G   ++  G +      D+   L     
Sbjct: 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGN 227

Query: 231 KGNWRTIASM--GTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG 288
              W  +A +     +A   A + +  L+   G  +                       G
Sbjct: 228 NLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFK----------------------G 265

Query: 289 LREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDC 348
            RE +       +E L      +     ++      W+      L +      ++   + 
Sbjct: 266 SRENYQNGKNYAHEGLKKSYSTD-----IHLWHNGKWDKS--GELSQGRAYGVSL-PWNN 317

Query: 349 RVYVVG--RNLHVAVGHITRLSTSEKKWS 375
            + ++G       AV     ++  + K +
Sbjct: 318 SLLIIGGETAGGKAVTDSVLITVKDNKVT 346

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 18/147 (12%), Positives = 38/147 (25%), Gaps = 24/147 (16%)

Query: 131 WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD-VDCPLDLVLKYEMQKNRWTVM 189
           W      P        G   V+       ++  G     +       L +     +W  +
Sbjct: 180 WSYAGESP---WYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL 234

Query: 190 NKMITARSF--FASGVIGGMIYVAGGSSAD----------------LFELDSAEVLDPVK 231
             + +        +G+    +  AGG+                   L +  S ++     
Sbjct: 235 APVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHN 294

Query: 232 GNWRTIASMGTNMASYDAAVLDGKLLV 258
           G W     +    A   +   +  LL+
Sbjct: 295 GKWDKSGELSQGRAYGVSLPWNNSLLI 321

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 56.1 bits (135), Expect = 6e-09
 Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 20/125 (16%)

Query: 131 WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGM---------------VSDVDCPLDL 175
           W+ +  +   D V   GF  +S     +L   GG                  +       
Sbjct: 231 WNKLAPVSSPDGVA-GGFAGIS---NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYS 286

Query: 176 VLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR 235
              +     +W    ++   R++  S      + + GG +A    +  + ++  VK N  
Sbjct: 287 TDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLIT-VKDNKV 345

Query: 236 TIASM 240
           T+ ++
Sbjct: 346 TVQNL 350

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 67.5 bits (164), Expect = 3e-12
 Identities = 38/318 (11%), Positives = 87/318 (27%), Gaps = 35/318 (11%)

Query: 86  LLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCP 145
                E F              +              + ++          + C+     
Sbjct: 329 PFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINLTVDEDYQLLECE--CPI 386

Query: 146 HGFRCVSIPREGTLFVCGGM----VSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFAS 201
           +            +F  GG     V+++   L +       KN     +++  AR     
Sbjct: 387 NRKFGDVDVAGNDVFYMGGSNPYRVNEILQ-LSIHYDKIDMKNIEVSSSEVPVARMCHTF 445

Query: 202 GVIG--GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLV 258
             I     + + GG  A    L    + D     W  I S+      + A  L DG +L+
Sbjct: 446 TTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLI 505

Query: 259 TEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGWTGSSVVVY----EHLFVV----- 307
             G        P   +Y+ + + ++ +       +    S+ + +    +   ++     
Sbjct: 506 LGGV----TEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFM 561

Query: 308 ---SELERMKLKVYDPSTDSWETIEGPPLPEQICKPF---AVNACDCRVYVVG----RNL 357
              +  ++  +  YD    +        L   + + +          ++ +VG      L
Sbjct: 562 DQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGL 621

Query: 358 HVAVGHITRLSTSEKKWS 375
                 I  L    +  +
Sbjct: 622 FDRTNSIISLDPLSETLT 639

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 64.8 bits (157), Expect = 2e-11
 Identities = 23/262 (8%), Positives = 75/262 (28%), Gaps = 35/262 (13%)

Query: 123 VLDLTHYCWHTIPAMPCKDKVCP--HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE 180
            L + +             +V          +I R   L + GG  +      D  + ++
Sbjct: 416 QLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI-FD 474

Query: 181 MQKNRWTVMNKMITARSFFASGVIG-GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS 239
           M+   W+++  +   R   ++  +  G + + GG +       +  + +  +  ++ +  
Sbjct: 475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG----PAMLLYNVTEEIFKDVTP 530

Query: 240 MGTNM-------ASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREG 292
                             V    +++  G++    VS +  ++    +N       +++ 
Sbjct: 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKL 590

Query: 293 WTG-------SSVVVYEHLFVV--------SELERMKLKVYDPSTDSWETIEGPPLPEQI 337
                         +     ++               +   DP +++  +I       + 
Sbjct: 591 QHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWED 650

Query: 338 CKPFAVNAC-----DCRVYVVG 354
                            ++++G
Sbjct: 651 HSLMLAGFSLVSTSMGTIHIIG 672

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 60.4 bits (145), Expect = 5e-10
 Identities = 39/302 (12%), Positives = 79/302 (26%), Gaps = 36/302 (11%)

Query: 83  WHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDK 142
           W   +           E       ++    +   G     +   + +   T         
Sbjct: 178 WGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT 237

Query: 143 VCPHGFRCV--SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFA 200
           V  H   C   S+   G + V GG  +           Y+   + W     M  AR + +
Sbjct: 238 VTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL------YDSSSDSWIPGPDMQVARGYQS 291

Query: 201 SGVIG-GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL----DGK 255
           S  +  G ++  GGS +      + EV  P    W ++ +   N             D  
Sbjct: 292 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNH 351

Query: 256 LLVTEGW--LWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERM 313
             +                  +  ++ + +  + G R+   G +        V+ +  + 
Sbjct: 352 AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG 411

Query: 314 K---------------------LKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYV 352
           K                     + + +P T          L        +V   D   ++
Sbjct: 412 KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFI 471

Query: 353 VG 354
            G
Sbjct: 472 TG 473

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 54.6 bits (130), Expect = 4e-08
 Identities = 35/248 (14%), Positives = 70/248 (28%), Gaps = 28/248 (11%)

Query: 105 PWLFVFA----FHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIP---REG 157
            WLF +     F                    +         V P      ++     +G
Sbjct: 352 AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG 411

Query: 158 TLFVCGGMVSDVD------CPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI--GGMIY 209
            +   GG     D        +  + +     N     N +  AR+F  + V+   G  +
Sbjct: 412 KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF-HTSVVLPDGSTF 470

Query: 210 VAGGSSA-----DLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGW 262
           + GG        D   + + E+  P +  +            +  ++L  DG++    G 
Sbjct: 471 ITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530

Query: 263 LW--PFFVSPRGQVYDPSTDNWESMAVGLREGWT--GSSVVVYEHLFVVS-ELERMKLKV 317
           L           Q++ P+     +  +  R   T   +  V       +S +    K  +
Sbjct: 531 LCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQSVKVGGRITISTDSSISKASL 590

Query: 318 YDPSTDSW 325
               T + 
Sbjct: 591 IRYGTATH 598

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 47.6 bits (112), Expect = 4e-06
 Identities = 35/263 (13%), Positives = 68/263 (25%), Gaps = 42/263 (15%)

Query: 131 WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN 190
           W   P M         G++  +   +G +F  GG  S           Y      WT + 
Sbjct: 277 WIPGPDMQV-----ARGYQSSATMSDGRVFTIGGSWSGGV-FEKNGEVYSPSSKTWTSLP 330

Query: 191 KMITARSFFASG----VIGGMIYVAGGSSADLFE----LDSAEVLDPVKGNWRTIASMGT 242
                    A            ++ G     +F+               G+ ++     +
Sbjct: 331 NAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS 390

Query: 243 NMASYDAAVL---------DGKLLVTEGWLWPFFVSP-----RGQVYDPSTDNW-----E 283
           N      A+           GK+L   G                 + +P T         
Sbjct: 391 NRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN 450

Query: 284 SMAVGLREG-----WTGSSVVVYEHLFVVSELERMKLK---VYDPSTDSWETIEGPPLPE 335
            +              GS+ +       +   +   +    +Y P  D++   + P    
Sbjct: 451 GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF-YKQNPNSIV 509

Query: 336 QICKPFAVNACDCRVYVVGRNLH 358
           ++    ++   D RV+  G  L 
Sbjct: 510 RVYHSISLLLPDGRVFNGGGGLC 532

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 46.8 bits (110), Expect = 5e-06
 Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 4/120 (3%)

Query: 39  PSPELEASLRAEPFIPGLPDDVALNCLLRLPVES-HAACRAVCKRWHLLLGN---KERFF 94
              E E    A  ++  LP+ + L  L  LP      ACR VC RW  L+          
Sbjct: 37  REAEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKC 96

Query: 95  TRRKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIP 154
            +   +           + +     + +   L + C           +    G++   +P
Sbjct: 97  QQEGLVPEGSADEERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELP 156

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 39/373 (10%), Positives = 105/373 (28%), Gaps = 120/373 (32%)

Query: 83  WHLLLGNKE---RFFTRRKELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMP- 138
           W LL   +E   +F      + +   +L           I+ +            P+M  
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINY--KFL--------MSPIKTEQRQ---------PSMMT 109

Query: 139 -----CKDKVC--PHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLK---YEMQKNRWTV 188
                 +D++      F   ++ R                   L L+    E++  +  +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRL---------------QPYLKLRQALLELRPAKNVL 154

Query: 189 MNKMI----------TARSFFASGVIGGMIY---VAGGSSADLFELDSAEVLDPVKGNWR 235
           ++ ++             S+     +   I+   +   +S +        VL+ ++    
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE-------TVLEMLQKLLY 207

Query: 236 TIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQ--------VYDPSTDNWESMAV 287
            I    T+ + + + +   ++   +  L     S   +        V +     W +  +
Sbjct: 208 QIDPNWTSRSDHSSNIKL-RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNL 264

Query: 288 GLR--------------EGWTGSSVVVYEHLFVVSELERMKL--KVYDPSTDSWETIEGP 331
             +                 T + + +  H   ++  E   L  K  D            
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD------- 317

Query: 332 PLPEQICK--PFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNF 389
            LP ++    P  ++       ++  ++   +            W      ++    ++ 
Sbjct: 318 -LPREVLTTNPRRLS-------IIAESIRDGLATWDN-------WKHVNCDKLTTIIESS 362

Query: 390 SD-LTPSSSQVLF 401
            + L P+  + +F
Sbjct: 363 LNVLEPAEYRKMF 375

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 16/39 (41%)

Query: 307 VSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA 345
           + +L+   LK+Y    DS      P L        A+ A
Sbjct: 22  LKKLQA-SLKLYAD--DS-----APAL--------AIKA 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	402
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.94
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.59
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.56
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.49
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.38
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.24
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.23
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.22
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.2
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.03
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.03
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.01
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.91
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.9
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.88
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.86
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.81
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.78
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.77
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.68
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.66
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.6
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.6
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.58
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.57
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.52
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.5
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.47
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.45
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	97.45
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.44
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.41
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.39
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.37
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.36
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.33
3jro_A	753	Fusion protein of protein transport protein SEC13	97.31
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.31
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.3
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.3
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.29
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.29
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.28
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.27
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.27
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.25
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.25
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.23
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.22
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.21
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.18
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.17
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.17
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.16
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.14
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.13
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.1
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.08
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.08
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.08
2pm7_B	297	Protein transport protein SEC13, protein transport	97.06
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.04
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.03
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.03
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.02
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.95
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.92
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.91
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.87
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.87
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.84
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.81
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.8
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.78
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.77
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.77
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.74
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.74
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.73
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.71
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.71
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.69
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.69
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.69
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.68
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.67
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.64
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.63
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.62
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	96.62
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.61
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.59
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.58
3ott_A	758	Two-component system sensor histidine kinase; beta	96.58
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.57
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.57
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.57
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.56
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.54
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.53
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.53
3jro_A	753	Fusion protein of protein transport protein SEC13	96.52
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.47
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.45
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.45
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.44
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.42
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.41
2pm7_B	297	Protein transport protein SEC13, protein transport	96.4
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.39
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.37
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	96.37
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.34
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.33
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.32
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	96.3
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.29
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.25
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.24
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.24
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.22
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.2
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.2
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.2
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	96.18
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.17
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	96.17
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.14
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.14
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	96.13
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	96.13
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	96.12
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.11
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.11
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.05
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.04
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	95.99
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	95.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	95.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	95.9
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.89
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	95.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.87
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.86
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	95.86
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	95.82
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	95.81
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.8
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	95.79
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	95.75
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.74
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.71
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.7
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.64
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.64
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.6
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	95.52
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	95.49
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	95.48
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	95.48
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	95.47
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.4
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	95.38
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.37
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	95.33
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	95.33
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	95.3
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	95.29
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	95.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.29
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	95.25
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.25
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.2
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	95.05
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.02
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	95.02
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	94.93
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	94.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	94.87
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	94.85
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	94.79
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	94.78
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	94.77
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	94.76
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	94.76
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	94.75
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	94.69
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	94.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	94.59
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.59
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.56
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	94.54
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	94.4
2p4o_A	306	Hypothetical protein; putative lactonase, structur	94.28
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	94.24
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.09
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	93.96
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	93.87
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	93.85
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	93.71
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	93.54
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	93.52
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	93.47
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	93.45
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	93.41
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	93.1
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	93.09
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	93.07
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	93.03
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	92.93
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	92.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	92.81
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	92.75
2qe8_A	343	Uncharacterized protein; structural genomics, join	92.69
3oyo_A	225	Hemopexin fold protein CP4; seeds, plant protein;	92.68
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	92.55
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	92.55
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	92.28
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	91.95
3ott_A	758	Two-component system sensor histidine kinase; beta	91.83
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	91.82
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	91.67
3v65_B	386	Low-density lipoprotein receptor-related protein;	91.56
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	91.1
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	91.08
3lp9_A	227	LS-24; SEED albumin, plant protein; HET: SPM; 2.20	91.06
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	91.03
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	91.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	90.99
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	90.94
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	90.92
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	90.88
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	90.69
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	90.64
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	90.49
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	90.41
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	90.08
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	89.98
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	89.85
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	89.68
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	88.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	88.79
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	88.68
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	88.6
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	88.5
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	87.51
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	86.49
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	86.48
2ece_A	462	462AA long hypothetical selenium-binding protein;	86.48
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	86.34
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	86.16
3c7x_A	196	Matrix metalloproteinase-14; membrane protein inte	86.13
3ba0_A	365	Macrophage metalloelastase; FULL-length MMP-12, he	86.07
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	85.85
1hxn_A	219	Hemopexin, HPX; heme, binding protein; 1.80A {Oryc	85.72
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	85.47
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	85.46
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	84.82
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	84.24
1k32_A	1045	Tricorn protease; protein degradation, substrate g	84.13
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	83.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	83.43
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	83.4
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	83.18
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	82.75
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	82.14
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	81.74
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	81.64
3oyo_A	225	Hemopexin fold protein CP4; seeds, plant protein;	81.08

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.2e-43  Score=319.12  Aligned_cols=264  Identities=22%  Similarity=0.410  Sum_probs=225.4

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      .++.||++||.......++++||+.+++|..++++|.++    ..++++++  +++||++||....  ...+++++||+.
T Consensus        14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~--~~~lyv~GG~~~~--~~~~~~~~~d~~   85 (302)
T 2xn4_A           14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRR----CRAGMVYM--AGLVFAVGGFNGS--LRVRTVDSYDPV   85 (302)
T ss_dssp             -CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEE--TTEEEEESCBCSS--SBCCCEEEEETT
T ss_pred             CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccc----ccceEEEE--CCEEEEEeCcCCC--ccccceEEECCC
Confidence            367899999976666678999999999999999888554    56666666  9999999998543  467899999999


Q ss_pred             CCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccc
Q 040145          183 KNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGW  262 (402)
Q Consensus       183 t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~  262 (402)
                      +++|+.++++|.+|..|++++++++||++||.+.... .+++++||+.+++|+.++++|.+|..+++++++++||++||.
T Consensus        86 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  164 (302)
T 2xn4_A           86 KDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG-LSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGY  164 (302)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCE-EEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCE
T ss_pred             CCceeeCCCCCccccceEEEEECCEEEEEcCCCCCcc-CceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCC
Confidence            9999999999999999999999999999999876544 788999999999999999999999999999999999999998


Q ss_pred             ccCC-ccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCCCCcc
Q 040145          263 LWPF-FVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPPLPEQ  336 (402)
Q Consensus       263 ~~~~-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~~p~~  336 (402)
                      .... ...+.+++||+.+++|+.+++ ++.++.+++ ++++++||++||.+    .+++++||+++++|++++.++.+  
T Consensus       165 ~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--  241 (302)
T 2xn4_A          165 DVASRQCLSTVECYNATTNEWTYIAE-MSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC--  241 (302)
T ss_dssp             ETTTTEECCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred             CCCCCccccEEEEEeCCCCcEEECCC-CccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence            6543 346789999999999999986 556665555 78899999999975    46899999999999999854443  


Q ss_pred             ccCCeEEEEeCCEEEEEecCce-eeeEEEEecccccccCceeeeEEEEeC
Q 040145          337 ICKPFAVNACDCRVYVVGRNLH-VAVGHITRLSTSEKKWSFSVQWQVVDA  385 (402)
Q Consensus       337 ~~~~~~~~~~~~~i~v~GG~~~-~~~~~v~~~~~~~~~~~~~~~W~~~~~  385 (402)
                       |..++++..+++|||+||.+. ....+++.||+..+      +|+.++.
T Consensus       242 -r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~------~W~~~~~  284 (302)
T 2xn4_A          242 -RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD------KWTVVSS  284 (302)
T ss_dssp             -CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT------EEEECSS
T ss_pred             -cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC------eEEECCc
Confidence             667888899999999999653 34688999999887      8888763

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.5e-42  Score=316.01  Aligned_cols=261  Identities=23%  Similarity=0.337  Sum_probs=223.4

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      .+.||++||...  ..++++||+.+++|..++++|.++    ..++++++  ++.||++||..   ....+++++||+.+
T Consensus        11 ~~~l~~~GG~~~--~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~--~~~lyv~GG~~---~~~~~~~~~~d~~~   79 (306)
T 3ii7_A           11 HDYRIALFGGSQ--PQSCRYFNPKDYSWTDIRCPFEKR----RDAACVFW--DNVVYILGGSQ---LFPIKRMDCYNVVK   79 (306)
T ss_dssp             CCEEEEEECCSS--TTSEEEEETTTTEEEECCCCSCCC----BSCEEEEE--TTEEEEECCBS---SSBCCEEEEEETTT
T ss_pred             cceEEEEeCCCC--CceEEEecCCCCCEecCCCCCccc----ceeEEEEE--CCEEEEEeCCC---CCCcceEEEEeCCC
Confidence            578999998654  667999999999999999988654    66777776  99999999986   35688999999999


Q ss_pred             CceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccc
Q 040145          184 NRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWL  263 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~  263 (402)
                      ++|+.++++|.+|..|++++++++||++||.+......+++++||+.+++|+.++++|.+|..+++++++++||++||..
T Consensus        80 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  159 (306)
T 3ii7_A           80 DSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSL  159 (306)
T ss_dssp             TEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred             CeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCC
Confidence            99999999999999999999999999999987444448899999999999999999999999999999999999999986


Q ss_pred             cCCc---cCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCCCCc
Q 040145          264 WPFF---VSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPPLPE  335 (402)
Q Consensus       264 ~~~~---~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~~p~  335 (402)
                      ....   ..+.+++||+.+++|+.+++ ++.++.+++ ++++++||++||.+    .+.+++||+++++|+.++.++.+ 
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-  237 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATETWTELCP-MIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK-  237 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC-
T ss_pred             CCCCcccccceEEEeCCCCCeEEECCC-ccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC-
Confidence            5433   26789999999999999986 666666555 78899999999975    36899999999999999854444 


Q ss_pred             cccCCeEEEEeCCEEEEEecCcee-eeEEEEecccccccCceeeeEEEEeC
Q 040145          336 QICKPFAVNACDCRVYVVGRNLHV-AVGHITRLSTSEKKWSFSVQWQVVDA  385 (402)
Q Consensus       336 ~~~~~~~~~~~~~~i~v~GG~~~~-~~~~v~~~~~~~~~~~~~~~W~~~~~  385 (402)
                        |..++++..+++|||+||.+.. ...+++.||+..+      +|+.++.
T Consensus       238 --r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~------~W~~~~~  280 (306)
T 3ii7_A          238 --GVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD------KWVANSK  280 (306)
T ss_dssp             --BSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT------EEEEEEE
T ss_pred             --ccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC------eEEeCCC
Confidence              7778888999999999996533 5689999999888      6766544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1.5e-42  Score=316.28  Aligned_cols=268  Identities=18%  Similarity=0.313  Sum_probs=226.0

Q ss_pred             cCCCCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccC--CCCCCCceEE
Q 040145          100 LGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVS--DVDCPLDLVL  177 (402)
Q Consensus       100 ~~~~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~--~~~~~~~~~~  177 (402)
                      ....++.||++||.......++++||+.+++|..++++|.++    ..++++++  ++.||++||...  +.....++++
T Consensus        20 ~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~   93 (308)
T 1zgk_A           20 APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR----SGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALD   93 (308)
T ss_dssp             -CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEE--TTEEEEECCEEEETTEEEECCCEE
T ss_pred             ccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccc----ccceEEEE--CCEEEEECCCcCCCCCCeecceEE
Confidence            345688999999875555668999999999999999888554    56666666  999999999831  1123568999


Q ss_pred             EEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEE
Q 040145          178 KYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLL  257 (402)
Q Consensus       178 ~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly  257 (402)
                      +||+.+++|+.++++|.+|..|++++++++||++||.+.... .+++++||+.+++|+.++++|.+|..+++++++++||
T Consensus        94 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy  172 (308)
T 1zgk_A           94 CYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIH-HNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLY  172 (308)
T ss_dssp             EEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEE-CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred             EECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcc-cccEEEECCCCCeEeECCCCCccccceEEEEECCEEE
Confidence            999999999999999999999999999999999999865544 7889999999999999999999999999999999999


Q ss_pred             EEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCC
Q 040145          258 VTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPP  332 (402)
Q Consensus       258 ~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~  332 (402)
                      ++||..+... .+.+++||+.+++|+.+++ ++.++..++ ++++++||++||.+    .+++++||+++++|+++..++
T Consensus       173 v~GG~~~~~~-~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  250 (308)
T 1zgk_A          173 AVGGFDGTNR-LNSAECYYPERNEWRMITA-MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK  250 (308)
T ss_dssp             EECCBCSSCB-CCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred             EEeCCCCCCc-CceEEEEeCCCCeEeeCCC-CCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence            9999875543 6789999999999999986 555565555 78899999999975    468999999999999998544


Q ss_pred             CCccccCCeEEEEeCCEEEEEecCce-eeeEEEEecccccccCceeeeEEEEeC
Q 040145          333 LPEQICKPFAVNACDCRVYVVGRNLH-VAVGHITRLSTSEKKWSFSVQWQVVDA  385 (402)
Q Consensus       333 ~p~~~~~~~~~~~~~~~i~v~GG~~~-~~~~~v~~~~~~~~~~~~~~~W~~~~~  385 (402)
                      .+   |..++++..+++|||+||.+. ....+++.||+..+      +|++++.
T Consensus       251 ~~---r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~------~W~~~~~  295 (308)
T 1zgk_A          251 HR---RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD------TWSEVTR  295 (308)
T ss_dssp             SC---CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT------EEEEEEE
T ss_pred             CC---ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC------EEeecCC
Confidence            44   677888899999999999663 34689999999888      7777654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=2.6e-42  Score=315.84  Aligned_cols=277  Identities=18%  Similarity=0.223  Sum_probs=225.0

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCcc----CCCCCCCceEEEE
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMV----SDVDCPLDLVLKY  179 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~----~~~~~~~~~~~~~  179 (402)
                      ++.||++||      .++++|||.+++|.. ++++.+.  .+..+++++  .+++||++||..    .......+++++|
T Consensus         4 ~~~l~~~GG------~~~~~yd~~~~~W~~-~~~~~p~--~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~   72 (315)
T 4asc_A            4 QDLIFMISE------EGAVAYDPAANECYC-ASLSSQV--PKNHVSLVT--KENQVFVAGGLFYNEDNKEDPMSAYFLQF   72 (315)
T ss_dssp             EEEEEEEET------TEEEEEETTTTEEEE-EECCCCS--CSSEEEEEC--TTCCEEEEEEEEECSSCSSSCEEEEEEEE
T ss_pred             ceEEEEEcC------CceEEECCCCCeEec-CCCCCCC--CccceEEEE--ECCEEEEEcCcccCCCCCccccccceEEe
Confidence            457888886      358999999999987 5565322  224344443  499999999973    1122335569999


Q ss_pred             ECCCCceeecCCCcccccceEEEEECCEEEEEcCCC--CCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEE
Q 040145          180 EMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSS--ADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLL  257 (402)
Q Consensus       180 d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly  257 (402)
                      |+.+++|+.++++|.+|..|+++.++++||++||.+  ......+++++||+.+++|+.++++|.+|..+++++++++||
T Consensus        73 d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iy  152 (315)
T 4asc_A           73 DHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVY  152 (315)
T ss_dssp             ETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred             cCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEE
Confidence            999999999999999999999999999999999974  223347899999999999999999999999999999999999


Q ss_pred             EEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCC
Q 040145          258 VTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPP  332 (402)
Q Consensus       258 ~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~  332 (402)
                      ++||........+.+++||+.+++|+.+++ ++.++..++ ++++++||++||.+    .+.+++||+++++|++++.++
T Consensus       153 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p  231 (315)
T 4asc_A          153 VIGGKGSDRKCLNKMCVYDPKKFEWKELAP-MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP  231 (315)
T ss_dssp             EECCBCTTSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCS
T ss_pred             EEeCCCCCCcccceEEEEeCCCCeEEECCC-CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCC
Confidence            999986555667899999999999999986 666666555 78899999999976    358999999999999998544


Q ss_pred             CCccccCCeEEEEeCCEEEEEecCce----------eeeEEEEecccccccCceeeeEEEEeC-CCCCCCccccceeEEe
Q 040145          333 LPEQICKPFAVNACDCRVYVVGRNLH----------VAVGHITRLSTSEKKWSFSVQWQVVDA-PDNFSDLTPSSSQVLF  401 (402)
Q Consensus       333 ~p~~~~~~~~~~~~~~~i~v~GG~~~----------~~~~~v~~~~~~~~~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~  401 (402)
                      .+   |..++++..+++|||+||...          ...++++.||+..+      +|+++.+ |+..+++++.+.++++
T Consensus       232 ~~---r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~------~W~~~~~~~r~~~~~~~~~~~l~v  302 (315)
T 4asc_A          232 QE---RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK------KWEGVLREIAYAAGATFLPVRLNV  302 (315)
T ss_dssp             SC---CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT------EEEEEESCSSCCSSCEEEEEEECG
T ss_pred             Cc---ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC------hhhhhccCCcCccceEEeCCEEEE
Confidence            44   777889999999999999753          45689999999888      7777754 7777777767666653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=5.7e-41  Score=304.92  Aligned_cols=263  Identities=21%  Similarity=0.342  Sum_probs=223.3

Q ss_pred             CCCeEEEEEE-eC-CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145          103 KDPWLFVFAF-HK-CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE  180 (402)
Q Consensus       103 ~~~~l~~~gg-~~-~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d  180 (402)
                      .++.||++|| .. .....++++||+.+++|..++.+|.++    ..++++++  +++||++||..+  ....+++++||
T Consensus        13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~--~~~l~v~GG~~~--~~~~~~~~~~d   84 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKR----RYVASVSL--HDRIYVIGGYDG--RSRLSSVECLD   84 (301)
T ss_dssp             CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCC----BSCEEEEE--TTEEEEECCBCS--SCBCCCEEEEE
T ss_pred             CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhh----ccccEEEE--CCEEEEEcCCCC--CccCceEEEEE
Confidence            4778999998 43 234557899999999999999888544    56677766  999999999863  34678999999


Q ss_pred             CCCCc---eeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEE
Q 040145          181 MQKNR---WTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLL  257 (402)
Q Consensus       181 ~~t~~---W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly  257 (402)
                      +.+++   |+.++++|.+|..|+++.++++||++||.+.... .+++++||+.+++|+.++++|.+|..+++++++++||
T Consensus        85 ~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iy  163 (301)
T 2vpj_A           85 YTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRR-HTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIY  163 (301)
T ss_dssp             TTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCB-CCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEE
T ss_pred             CCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcc-cceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEE
Confidence            99999   9999999999999999999999999999876554 7899999999999999999999999999999999999


Q ss_pred             EEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCC
Q 040145          258 VTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPP  332 (402)
Q Consensus       258 ~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~  332 (402)
                      ++||..+.. ..+.+++||+.+++|+.+++ ++.++..++ +.++++||++||.+    .+++++||+++++|++++.++
T Consensus       164 v~GG~~~~~-~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  241 (301)
T 2vpj_A          164 CLGGYDGLN-ILNSVEKYDPHTGHWTNVTP-MATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT  241 (301)
T ss_dssp             EECCBCSSC-BCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred             EECCCCCCc-ccceEEEEeCCCCcEEeCCC-CCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence            999986543 46789999999999999976 555555555 78899999999976    468999999999999998544


Q ss_pred             CCccccCCeEEEEeCCEEEEEecCce-eeeEEEEecccccccCceeeeEEEEeC
Q 040145          333 LPEQICKPFAVNACDCRVYVVGRNLH-VAVGHITRLSTSEKKWSFSVQWQVVDA  385 (402)
Q Consensus       333 ~p~~~~~~~~~~~~~~~i~v~GG~~~-~~~~~v~~~~~~~~~~~~~~~W~~~~~  385 (402)
                      .+   |..++++..+++|||+||... ....+++.||+..+      +|+.++.
T Consensus       242 ~~---r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~------~W~~~~~  286 (301)
T 2vpj_A          242 TP---RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID------SWEVVTS  286 (301)
T ss_dssp             SC---CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT------EEEEEEE
T ss_pred             Cc---ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC------eEEEcCC
Confidence            44   677888899999999999663 34589999999888      6777654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=1.1e-40  Score=305.38  Aligned_cols=277  Identities=15%  Similarity=0.263  Sum_probs=221.2

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCC--C--CCCCceEEEE
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD--V--DCPLDLVLKY  179 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~--~--~~~~~~~~~~  179 (402)
                      ++.||++||.      .+++|||.+++|... +++.+.  .+..+++++  .++.||++||...+  .  ....+++++|
T Consensus        15 ~~~i~~~GG~------~~~~yd~~~~~W~~~-~~~~~~--~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~   83 (318)
T 2woz_A           15 KDLILLVNDT------AAVAYDPMENECYLT-ALAEQI--PRNHSSIVT--QQNQVYVVGGLYVDEENKDQPLQSYFFQL   83 (318)
T ss_dssp             EEEEEEECSS------EEEEEETTTTEEEEE-EECTTS--CSSEEEEEC--SSSCEEEEESSCC-------CCCBEEEEE
T ss_pred             cchhhhcccc------ceEEECCCCCceecc-cCCccC--CccceEEEE--ECCEEEEECCcccCccccCCCccccEEEE
Confidence            5688999863      378999999999883 444221  123333333  59999999996321  1  1234569999


Q ss_pred             ECCCCceeecCCCcccccceEEEEECCEEEEEcCCCC-CCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEE
Q 040145          180 EMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSA-DLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLV  258 (402)
Q Consensus       180 d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~  258 (402)
                      |+.+++|+.++++|.+|..|++++++++||++||... .....+++++||+.+++|+.++++|.+|..+++++++++||+
T Consensus        84 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv  163 (318)
T 2woz_A           84 DNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYC  163 (318)
T ss_dssp             ETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEE
T ss_pred             eCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEE
Confidence            9999999999999999999999999999999999852 233378899999999999999999999999999999999999


Q ss_pred             EcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCCC
Q 040145          259 TEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPPL  333 (402)
Q Consensus       259 ~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~~  333 (402)
                      +||........+.+++||+.+++|+.+++ ++.++..++ ++++++||++||.+    .+.+++||+++++|++++.+|.
T Consensus       164 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~  242 (318)
T 2woz_A          164 LGGKTDDKKCTNRVFIYNPKKGDWKDLAP-MKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ  242 (318)
T ss_dssp             ECCEESSSCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS
T ss_pred             EcCCCCCCCccceEEEEcCCCCEEEECCC-CCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC
Confidence            99986555567899999999999999986 555555554 78899999999975    3689999999999999985443


Q ss_pred             CccccCCeEEEEeCCEEEEEecCce----------eeeEEEEecccccccCceeeeEEEE-eCCCCCCCccccceeEEe
Q 040145          334 PEQICKPFAVNACDCRVYVVGRNLH----------VAVGHITRLSTSEKKWSFSVQWQVV-DAPDNFSDLTPSSSQVLF  401 (402)
Q Consensus       334 p~~~~~~~~~~~~~~~i~v~GG~~~----------~~~~~v~~~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~  401 (402)
                      +   |..++++..+++|||+||...          ....+++.||+.++      +|+++ +.++..++++..+.++++
T Consensus       243 ~---r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~------~W~~~~~~~r~~~~~~~~~~~iyi  312 (318)
T 2woz_A          243 E---RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK------EWAGMLKEIRYASGASCLATRLNL  312 (318)
T ss_dssp             C---CBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT------EEEEEESCCGGGTTCEEEEEEEEG
T ss_pred             c---ccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC------EehhhcccccccccceeeCCEEEE
Confidence            3   677889999999999999753          23689999999888      77776 446666666667666654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=2.4e-38  Score=294.65  Aligned_cols=265  Identities=16%  Similarity=0.193  Sum_probs=208.5

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecC--CCcEEeCCCCC-CCCCCCCCCceEEEEccCCEEEEEeCc-c--CCCCCCCceE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLT--HYCWHTIPAMP-CKDKVCPHGFRCVSIPREGTLFVCGGM-V--SDVDCPLDLV  176 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~--~~~W~~l~~~~-~~~~~~~~~~~~~~~~~~~~i~v~GG~-~--~~~~~~~~~~  176 (402)
                      .++.||++||....   ++++||+.  +++|..++++| .++    ..++++++  +++||++||. .  ......++++
T Consensus        18 ~~~~iyv~GG~~~~---~~~~~d~~~~~~~W~~~~~~p~~~R----~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v   88 (357)
T 2uvk_A           18 DNDTVYIGLGSAGT---AWYKLDTQAKDKKWTALAAFPGGPR----DQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDV   88 (357)
T ss_dssp             ETTEEEEECGGGTT---CEEEEETTSSSCCEEECCCCTTCCC----BSCEEEEE--TTEEEEECCEEECTTSCEEECCCE
T ss_pred             ECCEEEEEeCcCCC---eEEEEccccCCCCeeECCCCCCCcC----ccceEEEE--CCEEEEEcCCCCCCCccceeeccE
Confidence            48999999986543   68999998  48999999988 444    66777776  9999999998 3  1122457899


Q ss_pred             EEEECCCCceeecCCCc-ccccceEEEEECCEEEEEcCCCCCC---------------------------------CCCC
Q 040145          177 LKYEMQKNRWTVMNKMI-TARSFFASGVIGGMIYVAGGSSADL---------------------------------FELD  222 (402)
Q Consensus       177 ~~~d~~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~---------------------------------~~~~  222 (402)
                      ++||+.+++|+.+++++ .+|..|++++++++||++||.+...                                 ...+
T Consensus        89 ~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (357)
T 2uvk_A           89 HKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNK  168 (357)
T ss_dssp             EEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCC
T ss_pred             EEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcc
Confidence            99999999999999988 8899999999999999999985431                                 1258


Q ss_pred             eeEEEcCCCCcEEEcCCCCCCCcc-eeEEEECCEEEEEcccccCCccCCcEEEEeC--CCCCeeecccc-ccCCCcee-E
Q 040145          223 SAEVLDPVKGNWRTIASMGTNMAS-YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDP--STDNWESMAVG-LREGWTGS-S  297 (402)
Q Consensus       223 ~~~~yd~~t~~W~~~~~~~~~~~~-~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~--~~~~W~~~~~~-~~~~~~~~-~  297 (402)
                      ++++||+.+++|+.++++|.++.. +++++++++||++||........+.+++||+  .+++|+.++.. .+..+.++ +
T Consensus       169 ~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~  248 (357)
T 2uvk_A          169 FLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFA  248 (357)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEE
T ss_pred             cEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceE
Confidence            999999999999999999987655 8899999999999998765555678999986  89999999762 23334444 4


Q ss_pred             EEECCEEEEEeccCC---------------------cEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecC
Q 040145          298 VVVYEHLFVVSELER---------------------MKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRN  356 (402)
Q Consensus       298 ~~~~~~l~~~gg~~~---------------------~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~  356 (402)
                      ++++++||++||...                     ..+++||+++++|++++.++.+   |..++++..+++|||+||.
T Consensus       249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~~~~i~v~GG~  325 (357)
T 2uvk_A          249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG---RAYGVSLPWNNSLLIIGGE  325 (357)
T ss_dssp             EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC---CBSSEEEEETTEEEEEEEE
T ss_pred             EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC---cccceeEEeCCEEEEEeee
Confidence            788999999999531                     4789999999999999854444   6668888999999999996


Q ss_pred             ce--eeeEEEEecccccccCceeeeEEEEeC
Q 040145          357 LH--VAVGHITRLSTSEKKWSFSVQWQVVDA  385 (402)
Q Consensus       357 ~~--~~~~~v~~~~~~~~~~~~~~~W~~~~~  385 (402)
                      +.  ...++|+.|+...+      .|..+.+
T Consensus       326 ~~~~~~~~~v~~l~~~~~------~~~~~~~  350 (357)
T 2uvk_A          326 TAGGKAVTDSVLITVKDN------KVTVQNL  350 (357)
T ss_dssp             CGGGCEEEEEEEEEC-CC------SCEEEC-
T ss_pred             CCCCCEeeeEEEEEEcCc------EeEeeec
Confidence            53  34689998887666      6666665

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=5.5e-39  Score=293.71  Aligned_cols=269  Identities=19%  Similarity=0.257  Sum_probs=218.6

Q ss_pred             chhhhhhhccHhHHHhhcCchHhHHHHhh--cCCCCCeEEEEEEe-----CC--CCceeEEEeecCCCcEEeCCCCCCCC
Q 040145           71 ESHAACRAVCKRWHLLLGNKERFFTRRKE--LGFKDPWLFVFAFH-----KC--TGKIQWQVLDLTHYCWHTIPAMPCKD  141 (402)
Q Consensus        71 ~~l~~~~~v~k~W~~l~~s~~~~~~~r~~--~~~~~~~l~~~gg~-----~~--~~~~~~~~~d~~~~~W~~l~~~~~~~  141 (402)
                      +.+..+....++|.. ...| . +..|..  ....++.||++||.     ..  .....+++||+.+++|+.++++|.++
T Consensus        13 ~~~~~yd~~~~~W~~-~~~~-~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r   89 (315)
T 4asc_A           13 EGAVAYDPAANECYC-ASLS-S-QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR   89 (315)
T ss_dssp             TEEEEEETTTTEEEE-EECC-C-CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred             CceEEECCCCCeEec-CCCC-C-CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence            345566777788875 3332 1 123333  44568999999984     11  12335899999999999999988554


Q ss_pred             CCCCCCceEEEEccCCEEEEEeCccC-CCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCC
Q 040145          142 KVCPHGFRCVSIPREGTLFVCGGMVS-DVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFE  220 (402)
Q Consensus       142 ~~~~~~~~~~~~~~~~~i~v~GG~~~-~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~  220 (402)
                          ..++++++  +++||++||... .+....+++++||+.+++|+.++++|.+|..|+++.++++||++||.......
T Consensus        90 ----~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  163 (315)
T 4asc_A           90 ----CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKC  163 (315)
T ss_dssp             ----ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCB
T ss_pred             ----hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcc
Confidence                66777776  999999999753 23457889999999999999999999999999999999999999998544444


Q ss_pred             CCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EE
Q 040145          221 LDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VV  299 (402)
Q Consensus       221 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~  299 (402)
                      .+++++||+.+++|+.++++|.+|..+++++++++||++||..+.. ..+.+++||+.+++|+.+++ ++.++.+++ ++
T Consensus       164 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~  241 (315)
T 4asc_A          164 LNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTG-LTSSAEVYSITDNKWAPFEA-FPQERSSLSLVS  241 (315)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSS-EEEEEEEEETTTTEEEEECC-CSSCCBSCEEEE
T ss_pred             cceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCC-ccceEEEEECCCCeEEECCC-CCCcccceeEEE
Confidence            8899999999999999999999999999999999999999986543 35689999999999999986 666666555 78


Q ss_pred             ECCEEEEEeccC-------------CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEec
Q 040145          300 VYEHLFVVSELE-------------RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGR  355 (402)
Q Consensus       300 ~~~~l~~~gg~~-------------~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG  355 (402)
                      ++++||++||.+             .+++++||+++++|+++.  +.|   |..+++++.+++|||+..
T Consensus       242 ~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~---r~~~~~~~~~~~l~v~~~  305 (315)
T 4asc_A          242 LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL--REI---AYAAGATFLPVRLNVLRL  305 (315)
T ss_dssp             ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE--SCS---SCCSSCEEEEEEECGGGS
T ss_pred             ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhc--cCC---cCccceEEeCCEEEEEEe
Confidence            899999999973             257999999999999994  566   677888899999999865

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=1.9e-38  Score=290.49  Aligned_cols=268  Identities=18%  Similarity=0.272  Sum_probs=215.5

Q ss_pred             hhhhhhccHhHHHhhcCchHhHHHHhhcCCCCCeEEEEEEeC----C---CCceeEEEeecCCCcEEeCCCCCCCCCCCC
Q 040145           73 HAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHK----C---TGKIQWQVLDLTHYCWHTIPAMPCKDKVCP  145 (402)
Q Consensus        73 l~~~~~v~k~W~~l~~s~~~~~~~r~~~~~~~~~l~~~gg~~----~---~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~  145 (402)
                      ...+....++|.... .+.......+.+...++.||++||..    .   .....+++||+.+++|..++++|.++    
T Consensus        26 ~~~yd~~~~~W~~~~-~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----  100 (318)
T 2woz_A           26 AVAYDPMENECYLTA-LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR----  100 (318)
T ss_dssp             EEEEETTTTEEEEEE-ECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB----
T ss_pred             eEEECCCCCceeccc-CCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc----
Confidence            455667778887732 22011122233455789999999832    1   11234899999999999999988654    


Q ss_pred             CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145          146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ..++++++  +++||++||.........+++++||+.+++|+.++++|.+|..|++++++++||++||........++++
T Consensus       101 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  178 (318)
T 2woz_A          101 CLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVF  178 (318)
T ss_dssp             CSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEE
T ss_pred             cccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEE
Confidence            66777777  9999999998643445678999999999999999999999999999999999999999854444478999


Q ss_pred             EEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEE
Q 040145          226 VLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHL  304 (402)
Q Consensus       226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l  304 (402)
                      +||+.+++|+.++++|.+|..+++++++++||++||..... ..+.+++||+.+++|+.+++ +|.++..++ ++++++|
T Consensus       179 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~i  256 (318)
T 2woz_A          179 IYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKTNKWEVMTE-FPQERSSISLVSLAGSL  256 (318)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTE-EEEEEEEEETTTCCEEECCC-CSSCCBSCEEEEETTEE
T ss_pred             EEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCC-ccceEEEEECCCCeEEECCC-CCCcccceEEEEECCEE
Confidence            99999999999999999999999999999999999986543 35689999999999999987 555565554 7889999


Q ss_pred             EEEeccC-------------CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEe
Q 040145          305 FVVSELE-------------RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVG  354 (402)
Q Consensus       305 ~~~gg~~-------------~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~G  354 (402)
                      |++||.+             .+++++||+++++|+++.  +.+   |..+++++++++|||+.
T Consensus       257 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~---r~~~~~~~~~~~iyi~~  314 (318)
T 2woz_A          257 YAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGML--KEI---RYASGASCLATRLNLFK  314 (318)
T ss_dssp             EEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEEE--SCC---GGGTTCEEEEEEEEGGG
T ss_pred             EEECCeeccCCCCceeccceeeeEEEEeCCCCEehhhc--ccc---cccccceeeCCEEEEEE
Confidence            9999964             368999999999999982  444   67778888999999874

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=1e-37  Score=283.63  Aligned_cols=262  Identities=24%  Similarity=0.384  Sum_probs=213.2

Q ss_pred             hhhhhhhccHhHHHhhcCchHhHHHHhh--cCCCCCeEEEEEEeCC-CCceeEEEeecCCCcEEeCCCCCCCCCCCCCCc
Q 040145           72 SHAACRAVCKRWHLLLGNKERFFTRRKE--LGFKDPWLFVFAFHKC-TGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGF  148 (402)
Q Consensus        72 ~l~~~~~v~k~W~~l~~s~~~~~~~r~~--~~~~~~~l~~~gg~~~-~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~  148 (402)
                      ++..+....++|..+...|    ..|..  ....++.||++||... ....++++||+.+++|+.+++++.++    ..+
T Consensus        31 ~~~~~d~~~~~W~~~~~~p----~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~  102 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAELP----SRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR----STL  102 (302)
T ss_dssp             CEEEEETTTTEEEEECCCS----SCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC----BSC
T ss_pred             cEEEEcCcCCcEeEcccCC----cccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc----cce
Confidence            3455666778898886555    23333  3345899999998643 34567899999999999999988554    667


Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCC-CCCCeeEEE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADL-FELDSAEVL  227 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~y  227 (402)
                      +++++  +++||++||....  ...+++++||+.+++|+.++++|.+|..+++++++++||++||.+... ...+++++|
T Consensus       103 ~~~~~--~~~iyv~GG~~~~--~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~y  178 (302)
T 2xn4_A          103 GAAVL--NGLLYAVGGFDGS--TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECY  178 (302)
T ss_dssp             EEEEE--TTEEEEEEEECSS--CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEE
T ss_pred             EEEEE--CCEEEEEcCCCCC--ccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEE
Confidence            77776  9999999998543  467899999999999999999999999999999999999999985543 236789999


Q ss_pred             cCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEE
Q 040145          228 DPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFV  306 (402)
Q Consensus       228 d~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~  306 (402)
                      |+.+++|+.++++|.+|..+++++++++||++||..+. ...+.+++||+.+++|+.++. ++.++.++. +.++++||+
T Consensus       179 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~i~v  256 (302)
T 2xn4_A          179 NATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGP-LVRKSVEVYDPTTNAWRQVAD-MNMCRRNAGVCAVNGLLYV  256 (302)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSS-SBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEE
T ss_pred             eCCCCcEEECCCCccccccccEEEECCEEEEECCCCCC-cccceEEEEeCCCCCEeeCCC-CCCccccCeEEEECCEEEE
Confidence            99999999999999999999999999999999998654 335789999999999999986 555555554 788999999


Q ss_pred             EeccC----CcEEEEEeCCCCceeecC-CCCCCccccCCeEEEEeCCEE
Q 040145          307 VSELE----RMKLKVYDPSTDSWETIE-GPPLPEQICKPFAVNACDCRV  350 (402)
Q Consensus       307 ~gg~~----~~~~~~yd~~~~~W~~~~-~~~~p~~~~~~~~~~~~~~~i  350 (402)
                      +||.+    .+++++||+++++|+.++ .++.+   |..+++++++++|
T Consensus       257 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~---r~~~~~~~~~~~i  302 (302)
T 2xn4_A          257 VGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTG---RSYAGVTVIDKRL  302 (302)
T ss_dssp             ECCBCSSSBCCCEEEEETTTTEEEECSSCCSSC---CBSCEEEEEEC--
T ss_pred             ECCcCCCcccccEEEEcCCCCeEEECCcccCcc---cccceEEEecccC
Confidence            99975    357999999999999997 33333   7778888888775

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.3e-37  Score=283.47  Aligned_cols=260  Identities=17%  Similarity=0.244  Sum_probs=213.4

Q ss_pred             chhhhhhhccHhHHHhhcCchHhHHHHhh--cCCCCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCc
Q 040145           71 ESHAACRAVCKRWHLLLGNKERFFTRRKE--LGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGF  148 (402)
Q Consensus        71 ~~l~~~~~v~k~W~~l~~s~~~~~~~r~~--~~~~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~  148 (402)
                      .++..+....++|..+...|    ..|..  ....++.||++||.......++++||+.+++|..++++|.++    ..+
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p----~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~   95 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPF----EKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR----DSL   95 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCS----CCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC----BSC
T ss_pred             ceEEEecCCCCCEecCCCCC----cccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc----cce
Confidence            34556677788899887655    23433  334688999999876555678999999999999999988554    667


Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCC---CCeeE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFE---LDSAE  225 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~~~  225 (402)
                      +++++  +++||++||.+. .....+++++||+.+++|+.++++|.+|..|+++.++++||++||.+.....   .++++
T Consensus        96 ~~~~~--~~~iyv~GG~~~-~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  172 (306)
T 3ii7_A           96 AACAA--EGKIYTSGGSEV-GNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCE  172 (306)
T ss_dssp             EEEEE--TTEEEEECCBBT-TBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEE
T ss_pred             eEEEE--CCEEEEECCCCC-CCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEE
Confidence            77776  999999999852 2356789999999999999999999999999999999999999998654432   68899


Q ss_pred             EEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEE
Q 040145          226 VLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHL  304 (402)
Q Consensus       226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l  304 (402)
                      +||+.+++|+.++++|.+|..+++++++++||++||.... ...+.+++||+.+++|+.+++ ++.++.+++ ++++++|
T Consensus       173 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~i  250 (306)
T 3ii7_A          173 VYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIKLNEWKMVSP-MPWKGVTVKCAAVGSIV  250 (306)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETT-EEBCCEEEEETTTTEEEECCC-CSCCBSCCEEEEETTEE
T ss_pred             EeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCC-CCCceEEEeeCCCCcEEECCC-CCCCccceeEEEECCEE
Confidence            9999999999999999999999999999999999998654 335789999999999999986 555555554 7889999


Q ss_pred             EEEeccC----CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEe
Q 040145          305 FVVSELE----RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC  346 (402)
Q Consensus       305 ~~~gg~~----~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~  346 (402)
                      |++||.+    .+++++||+++++|+.++.++.+   |..++++++
T Consensus       251 ~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~---r~~~~~~~~  293 (306)
T 3ii7_A          251 YVLAGFQGVGRLGHILEYNTETDKWVANSKVRAF---PVTSCLICV  293 (306)
T ss_dssp             EEEECBCSSSBCCEEEEEETTTTEEEEEEEEECC---SCTTCEEEE
T ss_pred             EEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccc---cceeEEEEE
Confidence            9999975    46899999999999999854443   555555543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=2.4e-37  Score=281.90  Aligned_cols=258  Identities=19%  Similarity=0.308  Sum_probs=213.1

Q ss_pred             cchhhhhhhccHhHHHhhcCchHhHHHHhh--cCCCCCeEEEEEEeC-----CCCceeEEEeecCCCcEEeCCCCCCCCC
Q 040145           70 VESHAACRAVCKRWHLLLGNKERFFTRRKE--LGFKDPWLFVFAFHK-----CTGKIQWQVLDLTHYCWHTIPAMPCKDK  142 (402)
Q Consensus        70 ~~~l~~~~~v~k~W~~l~~s~~~~~~~r~~--~~~~~~~l~~~gg~~-----~~~~~~~~~~d~~~~~W~~l~~~~~~~~  142 (402)
                      ..++..+...+++|..+...|    ..|..  ....++.||++||..     .....++++||+.+++|+.+++++.++ 
T Consensus        38 ~~~~~~~d~~~~~W~~~~~~p----~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-  112 (308)
T 1zgk_A           38 LSYLEAYNPSNGTWLRLADLQ----VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPR-  112 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCS----SCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCC-
T ss_pred             cceEEEEcCCCCeEeECCCCC----cccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCc-
Confidence            345667778888999886555    33333  334589999999862     223456899999999999999988554 


Q ss_pred             CCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCC
Q 040145          143 VCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELD  222 (402)
Q Consensus       143 ~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  222 (402)
                         ..++++++  +++||++||....  ...+++++||+.+++|+.++++|.+|..+++++++++||++||.+.... .+
T Consensus       113 ---~~~~~~~~--~~~iyv~GG~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~  184 (308)
T 1zgk_A          113 ---NRIGVGVI--DGHIYAVGGSHGC--IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR-LN  184 (308)
T ss_dssp             ---BTCEEEEE--TTEEEEECCEETT--EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCB-CC
T ss_pred             ---cccEEEEE--CCEEEEEcCCCCC--cccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCc-Cc
Confidence               66777776  9999999998643  3578999999999999999999999999999999999999999876655 78


Q ss_pred             eeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEEC
Q 040145          223 SAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVY  301 (402)
Q Consensus       223 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~  301 (402)
                      ++++||+.+++|+.++++|.+|..+++++++++||++||..+.. ..+.+++||+.+++|+.+++ ++.++..++ ++++
T Consensus       185 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~  262 (308)
T 1zgk_A          185 SAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD-QLNSVERYDVETETWTFVAP-MKHRRSALGITVHQ  262 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSS-BCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEET
T ss_pred             eEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCC-ccceEEEEeCCCCcEEECCC-CCCCccceEEEEEC
Confidence            99999999999999999999999999999999999999987543 36789999999999999986 566555555 7889


Q ss_pred             CEEEEEeccC----CcEEEEEeCCCCceeecCCCCCCccccCCeEEEE
Q 040145          302 EHLFVVSELE----RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA  345 (402)
Q Consensus       302 ~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~  345 (402)
                      ++||++||.+    .+++++||+++++|++++.++.+   |..+++++
T Consensus       263 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---r~~~~~~~  307 (308)
T 1zgk_A          263 GRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSG---RSGVGVAV  307 (308)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC---CBSCEEEE
T ss_pred             CEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCC---cccceeEe
Confidence            9999999975    46899999999999999854444   66666654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=276.20  Aligned_cols=258  Identities=21%  Similarity=0.346  Sum_probs=211.9

Q ss_pred             chhhhhhhccHhHHHhhcCchHhHHHHhh--cCCCCCeEEEEEEeCC-CCceeEEEeecCCCc---EEeCCCCCCCCCCC
Q 040145           71 ESHAACRAVCKRWHLLLGNKERFFTRRKE--LGFKDPWLFVFAFHKC-TGKIQWQVLDLTHYC---WHTIPAMPCKDKVC  144 (402)
Q Consensus        71 ~~l~~~~~v~k~W~~l~~s~~~~~~~r~~--~~~~~~~l~~~gg~~~-~~~~~~~~~d~~~~~---W~~l~~~~~~~~~~  144 (402)
                      ..+..+....++|..+...| .   .|..  ....++.||++||... ....++++||+.+++   |+.++++|.++   
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p-~---~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r---  103 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSIT-R---KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRR---  103 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCS-S---CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCC---
T ss_pred             eEEEEEcCCCCeEEeCCCCC-h---hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCc---
Confidence            34556677788898887656 2   3333  3345889999998643 345679999999999   99999888554   


Q ss_pred             CCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCee
Q 040145          145 PHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSA  224 (402)
Q Consensus       145 ~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  224 (402)
                       ..++++++  +++||++||....  ...+++++||+.+++|+.++++|.+|..|++++++++||++||.+.... .+++
T Consensus       104 -~~~~~~~~--~~~lyv~GG~~~~--~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~  177 (301)
T 2vpj_A          104 -GLAGATTL--GDMIYVSGGFDGS--RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNI-LNSV  177 (301)
T ss_dssp             -BSCEEEEE--TTEEEEECCBCSS--CBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCB-CCCE
T ss_pred             -cceeEEEE--CCEEEEEcccCCC--cccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcc-cceE
Confidence             66777776  9999999998643  4578999999999999999999999999999999999999999876554 7899


Q ss_pred             EEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCE
Q 040145          225 EVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEH  303 (402)
Q Consensus       225 ~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~  303 (402)
                      ++||+.+++|+.++++|.+|..+++++++++||++||..+.. ..+.+++||+.+++|+.++. ++.++..++ +.++++
T Consensus       178 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~  255 (301)
T 2vpj_A          178 EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTA-HLSSVEAYNIRTDSWTTVTS-MTTPRCYVGATVLRGR  255 (301)
T ss_dssp             EEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSS-BCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTE
T ss_pred             EEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCc-ccceEEEEeCCCCcEEECCC-CCCcccceeEEEECCE
Confidence            999999999999999999999999999999999999987543 35789999999999999986 555555544 788999


Q ss_pred             EEEEeccCC----cEEEEEeCCCCceeecCCCCCCccccCCeEEEEe
Q 040145          304 LFVVSELER----MKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC  346 (402)
Q Consensus       304 l~~~gg~~~----~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~  346 (402)
                      ||++||.+.    +.+++||+++++|+.++.  +|.. |..++++.+
T Consensus       256 i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~-r~~~~~~~~  299 (301)
T 2vpj_A          256 LYAIAGYDGNSLLSSIECYDPIIDSWEVVTS--MGTQ-RCDAGVCVL  299 (301)
T ss_dssp             EEEECCBCSSSBEEEEEEEETTTTEEEEEEE--EEEE-EESCEEEEE
T ss_pred             EEEEcCcCCCcccccEEEEcCCCCeEEEcCC--CCcc-cccceEEEe
Confidence            999999752    689999999999999984  4433 666666654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=4e-35  Score=272.86  Aligned_cols=250  Identities=17%  Similarity=0.206  Sum_probs=190.2

Q ss_pred             eCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC--CCceeecCCCc-ccccceEEEEECCEEE
Q 040145          133 TIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ--KNRWTVMNKMI-TARSFFASGVIGGMIY  209 (402)
Q Consensus       133 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~--t~~W~~~~~~~-~~r~~~~~~~~~~~iy  209 (402)
                      .+++||.++    ..+.++++  +++||++||...      +++++||+.  +++|+.++++| .+|..|++++++++||
T Consensus         2 ~l~~lP~~r----~~~~~~~~--~~~iyv~GG~~~------~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~ly   69 (357)
T 2uvk_A            2 VLPETPVPF----KSGTGAID--NDTVYIGLGSAG------TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLY   69 (357)
T ss_dssp             CSCCCSSCC----CSCEEEEE--TTEEEEECGGGT------TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEE
T ss_pred             CCCCCCccc----cceEEEEE--CCEEEEEeCcCC------CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEE
Confidence            467777544    55555555  999999999842      379999998  48999999999 8999999999999999


Q ss_pred             EEcCC-C---CCCCCCCeeEEEcCCCCcEEEcCCCC-CCCcceeEEEECCEEEEEcccccCC------------------
Q 040145          210 VAGGS-S---ADLFELDSAEVLDPVKGNWRTIASMG-TNMASYDAAVLDGKLLVTEGWLWPF------------------  266 (402)
Q Consensus       210 v~GG~-~---~~~~~~~~~~~yd~~t~~W~~~~~~~-~~~~~~~~~~~~g~ly~~gG~~~~~------------------  266 (402)
                      ++||. .   ......+++++||+.+++|+.+++++ .+|..+++++++++||++||.....                  
T Consensus        70 v~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~  149 (357)
T 2uvk_A           70 VFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAI  149 (357)
T ss_dssp             EECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             EEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccch
Confidence            99998 2   22233788999999999999999988 8999999999999999999975321                  


Q ss_pred             ---------------ccCCcEEEEeCCCCCeeeccccccCCCc-eeEEEECCEEEEEeccC-----CcEEEEEeC--CCC
Q 040145          267 ---------------FVSPRGQVYDPSTDNWESMAVGLREGWT-GSSVVVYEHLFVVSELE-----RMKLKVYDP--STD  323 (402)
Q Consensus       267 ---------------~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~~~~~~l~~~gg~~-----~~~~~~yd~--~~~  323 (402)
                                     ...+.+++||+.+++|+.+++.+..++. ..+++++++||++||..     ...+++||+  +++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~  229 (357)
T 2uvk_A          150 DKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL  229 (357)
T ss_dssp             HHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C
T ss_pred             hhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC
Confidence                           1357899999999999999763333444 34478899999999964     467888976  899


Q ss_pred             ceeecCCCCCCccccCCeEEEEeCCEEEEEecCce------------------eeeEEEEecccccccCceeeeEEEE--
Q 040145          324 SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLH------------------VAVGHITRLSTSEKKWSFSVQWQVV--  383 (402)
Q Consensus       324 ~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~------------------~~~~~v~~~~~~~~~~~~~~~W~~~--  383 (402)
                      +|+++..++.|.. +..++++..+++|||+||...                  ....++++||+..+      +|+++  
T Consensus       230 ~W~~~~~~~~~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~------~W~~~~~  302 (357)
T 2uvk_A          230 KWNKLAPVSSPDG-VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG------KWDKSGE  302 (357)
T ss_dssp             EEEECCCSSTTTC-CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---------CEEEEE
T ss_pred             cEEecCCCCCCcc-cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC------ceeeCCC
Confidence            9999986544432 556788999999999999542                  12368999999877      55554  


Q ss_pred             -eCCCCCCCccccceeEEe
Q 040145          384 -DAPDNFSDLTPSSSQVLF  401 (402)
Q Consensus       384 -~~~~~~~~~~~~~~~~~~  401 (402)
                       +.|+..+.++..+.++++
T Consensus       303 ~p~~r~~~~~~~~~~~i~v  321 (357)
T 2uvk_A          303 LSQGRAYGVSLPWNNSLLI  321 (357)
T ss_dssp             CSSCCBSSEEEEETTEEEE
T ss_pred             CCCCcccceeEEeCCEEEE
Confidence             445555555555555554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=3.3e-34  Score=287.58  Aligned_cols=259  Identities=12%  Similarity=0.141  Sum_probs=200.9

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCC-CCCCC-CCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIP-AMPCK-DKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE  180 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~-~~~~~-~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d  180 (402)
                      .++.||++||.......++++||+.+++|..++ +++.. .+..+..++++++..+++||++||..... ...+++++||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~-~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPH-QGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTT-CBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCC-CccccEEEEe
Confidence            688999999875555667999999999999988 63311 11223555555542289999999986433 3678999999


Q ss_pred             CCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCC---CCCCCcceeEEEEC---
Q 040145          181 MQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS---MGTNMASYDAAVLD---  253 (402)
Q Consensus       181 ~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~~~~~~~~~~~---  253 (402)
                      +.+++|+.++++|.+|..|+++++ +++||++||.+...    ++++||+.+++|+.++.   +|.+|..+++++++   
T Consensus       475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence            999999999999999999999997 99999999986543    89999999999999986   88999999988876   


Q ss_pred             CEEEEEcccccCC-ccCCcEEEEeCCCCC------eeeccccccCCCceeE-EEEC-CEEEEEeccC-------CcEEEE
Q 040145          254 GKLLVTEGWLWPF-FVSPRGQVYDPSTDN------WESMAVGLREGWTGSS-VVVY-EHLFVVSELE-------RMKLKV  317 (402)
Q Consensus       254 g~ly~~gG~~~~~-~~~~~~~~yd~~~~~------W~~~~~~~~~~~~~~~-~~~~-~~l~~~gg~~-------~~~~~~  317 (402)
                      ++||++||..... ...+.+++||+.+++      |+.+...++.++.+++ ++++ ++||++||.+       .+.+++
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  630 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS  630 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence            8999999986443 456789999999999      8888763334555554 6777 9999999964       468999


Q ss_pred             EeCCCCceeecCCCCCCc-------cccCCeEEEEeCC-EEEEEecCcee-----eeEEEEeccc
Q 040145          318 YDPSTDSWETIEGPPLPE-------QICKPFAVNACDC-RVYVVGRNLHV-----AVGHITRLST  369 (402)
Q Consensus       318 yd~~~~~W~~~~~~~~p~-------~~~~~~~~~~~~~-~i~v~GG~~~~-----~~~~v~~~~~  369 (402)
                      ||+.+++|+.+.   +|.       ..+.+|+++..++ +|||+||+.+.     -.+++|.+|.
T Consensus       631 yd~~t~~W~~~~---~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~ldl  692 (695)
T 2zwa_A          631 LDPLSETLTSIP---ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKLIA  692 (695)
T ss_dssp             EETTTTEEEECC---CCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEEEE
T ss_pred             EECCCCeEEEee---ccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEEEE
Confidence            999999999654   332       2355677777665 99999996543     2346666654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=1.8e-32  Score=274.92  Aligned_cols=223  Identities=14%  Similarity=0.159  Sum_probs=185.9

Q ss_pred             ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC-C-----CcccccceEEEEE--CCEEEEEcCCCCCCC
Q 040145          148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN-K-----MITARSFFASGVI--GGMIYVAGGSSADLF  219 (402)
Q Consensus       148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~-~-----~~~~r~~~~~~~~--~~~iyv~GG~~~~~~  219 (402)
                      ++++++ .++.||++||...   ...+++++||+.+++|+.++ +     +|.+|..|+++++  +++||++||.+....
T Consensus       390 ~g~~~~-~~~~iyv~GG~~~---~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~  465 (695)
T 2zwa_A          390 FGDVDV-AGNDVFYMGGSNP---YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQ  465 (695)
T ss_dssp             SCEEEE-CSSCEEEECCBSS---SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTC
T ss_pred             eeEEEE-ECCEEEEECCCCC---CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCC
Confidence            444443 4999999999854   46789999999999999987 5     7899999999999  999999999976554


Q ss_pred             CCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc--cccCCCcee
Q 040145          220 ELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGWTGS  296 (402)
Q Consensus       220 ~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~  296 (402)
                      ..+++++||+.+++|+.++++|.+|..|+++++ +++||++||.....    .+++||+.+++|+.++.  .+|.++.++
T Consensus       466 ~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~~~  541 (695)
T 2zwa_A          466 GLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSLVS  541 (695)
T ss_dssp             BCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCCBS
T ss_pred             ccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcccce
Confidence            478999999999999999999999999999996 99999999986543    79999999999999985  355556555


Q ss_pred             E-EEEC---CEEEEEeccC------CcEEEEEeCCCCc------eeecCCCCCCccccCCeEEEEeC-CEEEEEecCcee
Q 040145          297 S-VVVY---EHLFVVSELE------RMKLKVYDPSTDS------WETIEGPPLPEQICKPFAVNACD-CRVYVVGRNLHV  359 (402)
Q Consensus       297 ~-~~~~---~~l~~~gg~~------~~~~~~yd~~~~~------W~~~~~~~~p~~~~~~~~~~~~~-~~i~v~GG~~~~  359 (402)
                      + ++++   ++||++||..      .+++++||+.+++      |+.+..  +|...|..+++++++ ++|||+||....
T Consensus       542 ~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~~~~~~~~~iyv~GG~~~~  619 (695)
T 2zwa_A          542 AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQIKYITPRKLLIVGGTSPS  619 (695)
T ss_dssp             CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCEEEEEETTEEEEECCBCSS
T ss_pred             eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccceEEEeCCCEEEEECCccCC
Confidence            5 5656   8999999973      3689999999999      888874  333447888888888 999999996533


Q ss_pred             ----eeEEEEecccccccCceeeeEEEEeCC
Q 040145          360 ----AVGHITRLSTSEKKWSFSVQWQVVDAP  386 (402)
Q Consensus       360 ----~~~~v~~~~~~~~~~~~~~~W~~~~~~  386 (402)
                          ...+++.||+..+      +|+.++.|
T Consensus       620 ~~~~~~~~v~~yd~~t~------~W~~~~~p  644 (695)
T 2zwa_A          620 GLFDRTNSIISLDPLSE------TLTSIPIS  644 (695)
T ss_dssp             CCCCTTTSEEEEETTTT------EEEECCCC
T ss_pred             CCCCCCCeEEEEECCCC------eEEEeecc
Confidence                3688999999888      77765544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=100.00  E-value=3.1e-33  Score=280.21  Aligned_cols=307  Identities=14%  Similarity=0.109  Sum_probs=220.1

Q ss_pred             hhhhhhccHhHHHhhcCchHhHHHHhhcCC--CCCeEEEEEEeCCC-------CceeEEEeecCCCcEEeCCCCCCCCCC
Q 040145           73 HAACRAVCKRWHLLLGNKERFFTRRKELGF--KDPWLFVFAFHKCT-------GKIQWQVLDLTHYCWHTIPAMPCKDKV  143 (402)
Q Consensus        73 l~~~~~v~k~W~~l~~s~~~~~~~r~~~~~--~~~~l~~~gg~~~~-------~~~~~~~~d~~~~~W~~l~~~~~~~~~  143 (402)
                      ...+.....+|..+...| .   .....+.  .++.||++||....       ....+++||+.+++|..++.++.++  
T Consensus       168 ~~~~dp~~~~W~~~~~~P-~---~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~--  241 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLP-I---VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH--  241 (656)
T ss_dssp             CCCCCTTSCEEEEEEECS-S---CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC--
T ss_pred             cccCCCCCCeeeeeccCC-C---CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC--
Confidence            334455677899888777 4   1122222  28899999986432       2346899999999999998887544  


Q ss_pred             CCCCce-EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCC
Q 040145          144 CPHGFR-CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFEL  221 (402)
Q Consensus       144 ~~~~~~-~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~  221 (402)
                        ..++ .+++..+++||++||...      .++++||+.+++|+.+++|+.+|..|+++++ +++||++||........
T Consensus       242 --~~~~~~~~~~~~g~lyv~GG~~~------~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~  313 (656)
T 1k3i_A          242 --DMFCPGISMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFE  313 (656)
T ss_dssp             --CCSSCEEEECTTSCEEEECSSST------TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCC
T ss_pred             --CCccccccCCCCCCEEEeCCCCC------CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCccc
Confidence              3333 233335899999999743      2799999999999999999999999999999 99999999953333347


Q ss_pred             CeeEEEcCCCCcEEEc-----CCCCCCCcceeEEEECCEEEEEcccccCC---ccCCcEEEEeCCCCCeeeccccccC--
Q 040145          222 DSAEVLDPVKGNWRTI-----ASMGTNMASYDAAVLDGKLLVTEGWLWPF---FVSPRGQVYDPSTDNWESMAVGLRE--  291 (402)
Q Consensus       222 ~~~~~yd~~t~~W~~~-----~~~~~~~~~~~~~~~~g~ly~~gG~~~~~---~~~~~~~~yd~~~~~W~~~~~~~~~--  291 (402)
                      +++++||+.+++|+.+     .+++..+.. +++..++++|++||.++..   ...+.++.||+.++.|.......+.  
T Consensus       314 ~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~  392 (656)
T 1k3i_A          314 KNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR  392 (656)
T ss_dssp             CCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETT
T ss_pred             ccceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccc
Confidence            8999999999999997     445555443 4455799999999976432   2346899999999998754322221  


Q ss_pred             -----CCceeEEE---ECCEEEEEeccC-------Cc---EEEEEeCCCCceeecCCCCCCccccCCeEEEEe-CCEEEE
Q 040145          292 -----GWTGSSVV---VYEHLFVVSELE-------RM---KLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC-DCRVYV  352 (402)
Q Consensus       292 -----~~~~~~~~---~~~~l~~~gg~~-------~~---~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~-~~~i~v  352 (402)
                           +..+.++.   .+++||++||..       .+   .+++||+.+++|.++...++|.. |..+++++. +|+|||
T Consensus       393 ~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~-R~~~~~~~l~~g~i~v  471 (656)
T 1k3i_A          393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA-RTFHTSVVLPDGSTFI  471 (656)
T ss_dssp             EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC-CBSCEEEECTTSCEEE
T ss_pred             ccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC-cccCCeEECCCCCEEE
Confidence                 22333333   489999999963       12   78999999999999862234433 666676665 999999


Q ss_pred             EecCce-------eeeEEEEecccccccCceeeeEEEEeC---CCCCCCcccc--ceeEEe
Q 040145          353 VGRNLH-------VAVGHITRLSTSEKKWSFSVQWQVVDA---PDNFSDLTPS--SSQVLF  401 (402)
Q Consensus       353 ~GG~~~-------~~~~~v~~~~~~~~~~~~~~~W~~~~~---~~~~~~~~~~--~~~~~~  401 (402)
                      +||...       ....+++.||+..+      +|+.+..   |+..+..+..  +.+||+
T Consensus       472 ~GG~~~~~~~~~~~~~~~v~~ydp~t~------~W~~~~~~~~~R~~hs~a~ll~dg~v~v  526 (656)
T 1k3i_A          472 TGGQRRGIPFEDSTPVFTPEIYVPEQD------TFYKQNPNSIVRVYHSISLLLPDGRVFN  526 (656)
T ss_dssp             ECCBSBCCTTCCCSBCCCCEEEEGGGT------EEEECCCCSSCCCTTEEEEECTTSCEEE
T ss_pred             ECCcccCcCcCCCCcccceEEEcCCCC------ceeecCCCCCccccccHhhcCCCcEEEe
Confidence            999652       34688999999777      7777654   4444443333  555554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.96  E-value=1.8e-29  Score=252.84  Aligned_cols=263  Identities=14%  Similarity=0.160  Sum_probs=192.1

Q ss_pred             EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC----CCCCceEEEEECCCCceeecCCCcccc
Q 040145          121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV----DCPLDLVLKYEMQKNRWTVMNKMITAR  196 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~----~~~~~~~~~~d~~t~~W~~~~~~~~~r  196 (402)
                      +..|||.+++|..++++|.      ..++++++..+++||++||...+.    ......+++||+.+++|+.++.++.+|
T Consensus       168 ~~~~dp~~~~W~~~~~~P~------~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~  241 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPI------VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH  241 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSS------CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC
T ss_pred             cccCCCCCCeeeeeccCCC------CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC
Confidence            5678999999999888773      234555543389999999986432    123457999999999999999998887


Q ss_pred             cceE--EEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEcccccCCccCCcE
Q 040145          197 SFFA--SGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRG  272 (402)
Q Consensus       197 ~~~~--~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~  272 (402)
                      ..++  +++ .+++||++||...     .++++||+.+++|+++++|+.+|..++++++ +|+||++||........+.+
T Consensus       242 ~~~~~~~~~~~~g~lyv~GG~~~-----~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~  316 (656)
T 1k3i_A          242 DMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNG  316 (656)
T ss_dssp             CCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCE
T ss_pred             CCccccccCCCCCCEEEeCCCCC-----CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccc
Confidence            6653  343 5899999999753     3699999999999999999999999999999 99999999954444456789


Q ss_pred             EEEeCCCCCeeecc----ccccCCCceeEEEECCEEEEEeccC--------CcEEEEEeCCCCceeecCCCCCCc-----
Q 040145          273 QVYDPSTDNWESMA----VGLREGWTGSSVVVYEHLFVVSELE--------RMKLKVYDPSTDSWETIEGPPLPE-----  335 (402)
Q Consensus       273 ~~yd~~~~~W~~~~----~~~~~~~~~~~~~~~~~l~~~gg~~--------~~~~~~yd~~~~~W~~~~~~~~p~-----  335 (402)
                      ++||+.+++|+.++    .+++..+...++..++++|++||.+        ...+++||++++.|..... ..+.     
T Consensus       317 e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~-~~~~~~~~~  395 (656)
T 1k3i_A          317 EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG-KRQSNRGVA  395 (656)
T ss_dssp             EEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE-ECEETTEEC
T ss_pred             eEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCC-ccccccccC
Confidence            99999999999974    2344444443456799999999865        3578999999999876432 1111     


Q ss_pred             cccCCeEEE---EeCCEEEEEecCce----e---eeEEEEecccccccCceeeeEEEEe-----CCCCCCCcccc-ceeE
Q 040145          336 QICKPFAVN---ACDCRVYVVGRNLH----V---AVGHITRLSTSEKKWSFSVQWQVVD-----APDNFSDLTPS-SSQV  399 (402)
Q Consensus       336 ~~~~~~~~~---~~~~~i~v~GG~~~----~---~~~~v~~~~~~~~~~~~~~~W~~~~-----~~~~~~~~~~~-~~~~  399 (402)
                      ..+..++++   ..+++|||+||...    .   ....++.||+..+      .|.++.     .++..+.++.. +.++
T Consensus       396 ~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~------~W~~~~~~~mp~~R~~~~~~~l~~g~i  469 (656)
T 1k3i_A          396 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS------PNTVFASNGLYFARTFHTSVVLPDGST  469 (656)
T ss_dssp             CCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC------CEEEECTTCCSSCCBSCEEEECTTSCE
T ss_pred             CCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC------CeeEEccCCCCCCcccCCeEECCCCCE
Confidence            012223333   36999999999532    1   2237999999887      666653     34444444444 5555


Q ss_pred             Ee
Q 040145          400 LF  401 (402)
Q Consensus       400 ~~  401 (402)
                      ++
T Consensus       470 ~v  471 (656)
T 1k3i_A          470 FI  471 (656)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.97  E-value=4.5e-07  Score=85.89  Aligned_cols=270  Identities=14%  Similarity=0.141  Sum_probs=143.4

Q ss_pred             CCCCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhHHHHhh-c----------------------------
Q 040145           50 EPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKE-L----------------------------  100 (402)
Q Consensus        50 ~~~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~~~r~~-~----------------------------  100 (402)
                      ...+..||+|++..||+.|+..++.++..|||+|+.+..++ .+...... .                            
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~   94 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDN-LLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYI   94 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCS-HHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCch-hHhhhheeecccccccccccceecCCCccCCcHHHHHh
Confidence            34688999999999999999999999999999999998876 54332110 0                            


Q ss_pred             ---------------------CCCCCeEEEEEEeC-----CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEc
Q 040145          101 ---------------------GFKDPWLFVFAFHK-----CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIP  154 (402)
Q Consensus       101 ---------------------~~~~~~l~~~gg~~-----~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~  154 (402)
                                           ...+..+..+..+.     ......+.+||..+.+-...  +....    ....+... 
T Consensus        95 ~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~----~~v~~~~~-  167 (445)
T 2ovr_B           95 RQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT--LVGHT----GGVWSSQM-  167 (445)
T ss_dssp             HHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE--CCCCS----SCEEEEEE-
T ss_pred             hhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE--EcCCC----CCEEEEEe-
Confidence                                 00011111110000     01112355677665543221  11110    11223333 


Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNW  234 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  234 (402)
                       .+.+++.|+.+       ..+.+||..+++-...  +............++..++.|+.      ...+.+||..+++-
T Consensus       168 -~~~~l~s~~~d-------g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~  231 (445)
T 2ovr_B          168 -RDNIIISGSTD-------RTLKVWNAETGECIHT--LYGHTSTVRCMHLHEKRVVSGSR------DATLRVWDIETGQC  231 (445)
T ss_dssp             -ETTEEEEEETT-------SCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTEEEEEET------TSEEEEEESSSCCE
T ss_pred             -cCCEEEEEeCC-------CeEEEEECCcCcEEEE--ECCCCCcEEEEEecCCEEEEEeC------CCEEEEEECCCCcE
Confidence             45566777652       2689999988753221  11111122222334445666664      45788999887653


Q ss_pred             EEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcE
Q 040145          235 RTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMK  314 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~  314 (402)
                      ...  +........++..++..++.|+.+      ..+..||+.+.+-...-  ......-.++..++..++.|+. ...
T Consensus       232 ~~~--~~~~~~~v~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~l~~~~~-d~~  300 (445)
T 2ovr_B          232 LHV--LMGHVAAVRCVQYDGRRVVSGAYD------FMVKVWDPETETCLHTL--QGHTNRVYSLQFDGIHVVSGSL-DTS  300 (445)
T ss_dssp             EEE--EECCSSCEEEEEECSSCEEEEETT------SCEEEEEGGGTEEEEEE--CCCSSCEEEEEECSSEEEEEET-TSC
T ss_pred             EEE--EcCCcccEEEEEECCCEEEEEcCC------CEEEEEECCCCcEeEEe--cCCCCceEEEEECCCEEEEEeC-CCe
Confidence            221  111122233444577777777753      36888998765422111  1111111224557777777776 557


Q ss_pred             EEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145          315 LKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV  359 (402)
Q Consensus       315 ~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~  359 (402)
                      +.+||..+.+-...-  ...   .........++.+++.|+.++.
T Consensus       301 i~i~d~~~~~~~~~~--~~~---~~~v~~~~~~~~~l~~~~~dg~  340 (445)
T 2ovr_B          301 IRVWDVETGNCIHTL--TGH---QSLTSGMELKDNILVSGNADST  340 (445)
T ss_dssp             EEEEETTTCCEEEEE--CCC---CSCEEEEEEETTEEEEEETTSC
T ss_pred             EEEEECCCCCEEEEE--cCC---cccEEEEEEeCCEEEEEeCCCe
Confidence            999999876533221  111   1122333445666777775543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.96  E-value=2.8e-07  Score=87.74  Aligned_cols=39  Identities=21%  Similarity=0.410  Sum_probs=36.5

Q ss_pred             CCCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcC
Q 040145           51 PFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGN   89 (402)
Q Consensus        51 ~~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s   89 (402)
                      ..+..||+|++.+||+.|+..++.++..|||+|+.++..
T Consensus        13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            356789999999999999999999999999999999987

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.94  E-value=2.9e-07  Score=87.03  Aligned_cols=266  Identities=16%  Similarity=0.128  Sum_probs=144.2

Q ss_pred             CCCCCcHH----HHHHhhccCccchhhhhhhccHhHHHhhcCchHhHHHHh-----------------------------
Q 040145           52 FIPGLPDD----VALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRK-----------------------------   98 (402)
Q Consensus        52 ~~~~Lp~d----l~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~~~r~-----------------------------   98 (402)
                      .+..||+|    ++..||+.|+..++.++..|||+|+.++..+ .+.+...                             
T Consensus        10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   88 (435)
T 1p22_A           10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG-MLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPP   88 (435)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHT-THHHHHHHHHHTSCHHHHHHHHSSSGGGGCC-----
T ss_pred             hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCC
Confidence            45679999    9999999999999999999999999887654 3221000                             


Q ss_pred             ------------------------h----cC-----------CC---------CCeEEEEEEeCCCCceeEEEeecCCCc
Q 040145           99 ------------------------E----LG-----------FK---------DPWLFVFAFHKCTGKIQWQVLDLTHYC  130 (402)
Q Consensus        99 ------------------------~----~~-----------~~---------~~~l~~~gg~~~~~~~~~~~~d~~~~~  130 (402)
                                              .    ..           ..         ++..++.|+.+    ..+.+||..+.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~d----g~i~iwd~~~~~  164 (435)
T 1p22_A           89 DGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRD----NTIKIWDKNTLE  164 (435)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESS----SCEEEEESSSCC
T ss_pred             CCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCC----CeEEEEeCCCCe
Confidence                                    0    00           00         11122222221    236677776655


Q ss_pred             EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEE
Q 040145          131 WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYV  210 (402)
Q Consensus       131 W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv  210 (402)
                      -...  +..      +.....++..++.+++.|+.+       ..+.+||..+++-...  +............++..++
T Consensus       165 ~~~~--~~~------h~~~v~~l~~~~~~l~sg~~d-------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~  227 (435)
T 1p22_A          165 CKRI--LTG------HTGSVLCLQYDERVIITGSSD-------STVRVWDVNTGEMLNT--LIHHCEAVLHLRFNNGMMV  227 (435)
T ss_dssp             EEEE--ECC------CSSCEEEEECCSSEEEEEETT-------SCEEEEESSSCCEEEE--ECCCCSCEEEEECCTTEEE
T ss_pred             EEEE--EcC------CCCcEEEEEECCCEEEEEcCC-------CeEEEEECCCCcEEEE--EcCCCCcEEEEEEcCCEEE
Confidence            3222  111      111222222377788888763       2699999988764321  1111122223333455666


Q ss_pred             EcCCCCCCCCCCeeEEEcCCCCcEEEc-CCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccc
Q 040145          211 AGGSSADLFELDSAEVLDPVKGNWRTI-ASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL  289 (402)
Q Consensus       211 ~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~  289 (402)
                      .|+.      ...+.+||..+..-... ..+........++..++..++.|+.+      ..+.+||+.+++-...-.  
T Consensus       228 s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~--  293 (435)
T 1p22_A          228 TCSK------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWNTSTCEFVRTLN--  293 (435)
T ss_dssp             EEET------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTTCCEEEEEE--
T ss_pred             EeeC------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCC------CeEEEEECCcCcEEEEEc--
Confidence            6665      35688899877542111 11111222233444466666666643      368899998764322111  


Q ss_pred             cCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145          290 REGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV  359 (402)
Q Consensus       290 ~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~  359 (402)
                      .....-.++..++.+++.|+. ...+.+||..+.+-...-  ...   ......+..++..++.|+.++.
T Consensus       294 ~~~~~v~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~--~~h---~~~v~~~~~~~~~l~sg~~dg~  357 (435)
T 1p22_A          294 GHKRGIACLQYRDRLVVSGSS-DNTIRLWDIECGACLRVL--EGH---EELVRCIRFDNKRIVSGAYDGK  357 (435)
T ss_dssp             CCSSCEEEEEEETTEEEEEET-TSCEEEEETTTCCEEEEE--CCC---SSCEEEEECCSSEEEEEETTSC
T ss_pred             CCCCcEEEEEeCCCEEEEEeC-CCeEEEEECCCCCEEEEE--eCC---cCcEEEEEecCCEEEEEeCCCc
Confidence            111111224456777777765 557999999876432211  111   1222344458888888886544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.64  E-value=6.2e-06  Score=70.41  Aligned_cols=192  Identities=15%  Similarity=0.063  Sum_probs=120.4

Q ss_pred             CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145          146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ..|.......++.||+..|..+     .+.+.++|+.|++-..--+++......+++..+++||+....      .+.++
T Consensus        20 ~~ftqGL~~~~~~LyestG~~g-----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~------~~~v~   88 (243)
T 3mbr_X           20 TAFTEGLFYLRGHLYESTGETG-----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR------NHEGF   88 (243)
T ss_dssp             TCCEEEEEEETTEEEEEECCTT-----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEE
T ss_pred             ccccccEEEECCEEEEECCCCC-----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee------CCEEE
Confidence            4453333334899999998742     458999999999866544555555566778889999999764      67899


Q ss_pred             EEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCee-eccc---cccCCCceeEEEEC
Q 040145          226 VLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAV---GLREGWTGSSVVVY  301 (402)
Q Consensus       226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~---~~~~~~~~~~~~~~  301 (402)
                      +||+.|.+-.  ..++.+..+.+.+.-+++||+.-|       .+.+..+|+++.+-. .+..   +.+.....-....+
T Consensus        89 v~D~~tl~~~--~ti~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~  159 (243)
T 3mbr_X           89 VYDLATLTPR--ARFRYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVN  159 (243)
T ss_dssp             EEETTTTEEE--EEEECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET
T ss_pred             EEECCcCcEE--EEEeCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeC
Confidence            9999987633  233333455555555667888765       247999999987532 2322   11112222223469


Q ss_pred             CEEEEEeccCCcEEEEEeCCCCc---eeecCCCCCC------ccccCCeEEEEe--CCEEEEEecCce
Q 040145          302 EHLFVVSELERMKLKVYDPSTDS---WETIEGPPLP------EQICKPFAVNAC--DCRVYVVGRNLH  358 (402)
Q Consensus       302 ~~l~~~gg~~~~~~~~yd~~~~~---W~~~~~~~~p------~~~~~~~~~~~~--~~~i~v~GG~~~  358 (402)
                      |+||+- -...+.|.+.|+++.+   |..+.++...      .......+++..  +++|||.|-...
T Consensus       160 G~lyan-vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp  226 (243)
T 3mbr_X          160 GELLAN-VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP  226 (243)
T ss_dssp             TEEEEE-ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred             CEEEEE-ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence            999954 3347799999999875   4444422100      011122344443  578888887543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.62  E-value=5.8e-05  Score=68.28  Aligned_cols=233  Identities=12%  Similarity=0.021  Sum_probs=132.2

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCcE-EeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEEC
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCW-HTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM  181 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W-~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~  181 (402)
                      .++.+|+....    ...+.++|+.+.+- ..++...       ...+.+. ..++++|+....       .+.+.++|+
T Consensus        52 ~~~~lyv~~~~----~~~v~viD~~t~~~~~~i~~~~-------~p~~i~~-~~~g~lyv~~~~-------~~~v~~iD~  112 (328)
T 3dsm_A           52 RDGIGWIVVNN----SHVIFAIDINTFKEVGRITGFT-------SPRYIHF-LSDEKAYVTQIW-------DYRIFIINP  112 (328)
T ss_dssp             ETTEEEEEEGG----GTEEEEEETTTCCEEEEEECCS-------SEEEEEE-EETTEEEEEEBS-------CSEEEEEET
T ss_pred             ECCEEEEEEcC----CCEEEEEECcccEEEEEcCCCC-------CCcEEEE-eCCCeEEEEECC-------CCeEEEEEC
Confidence            36778887632    34588999998875 3343222       1123333 237799998743       348999999


Q ss_pred             CCCceee-cCCCccc----ccceEEEEECCEEEEEcC-CCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE-EECC
Q 040145          182 QKNRWTV-MNKMITA----RSFFASGVIGGMIYVAGG-SSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA-VLDG  254 (402)
Q Consensus       182 ~t~~W~~-~~~~~~~----r~~~~~~~~~~~iyv~GG-~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~-~~~g  254 (402)
                      .|++-.. ++ ....    .....++..++++|+... .      ...+.++|+.+++....-+..  ..-...+ .-+|
T Consensus       113 ~t~~~~~~i~-~g~~~~~~~~p~~i~~~~~~lyv~~~~~------~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG  183 (328)
T 3dsm_A          113 KTYEITGYIE-CPDMDMESGSTEQMVQYGKYVYVNCWSY------QNRILKIDTETDKVVDELTIG--IQPTSLVMDKYN  183 (328)
T ss_dssp             TTTEEEEEEE-CTTCCTTTCBCCCEEEETTEEEEEECTT------CCEEEEEETTTTEEEEEEECS--SCBCCCEECTTS
T ss_pred             CCCeEEEEEE-cCCccccCCCcceEEEECCEEEEEcCCC------CCEEEEEECCCCeEEEEEEcC--CCccceEEcCCC
Confidence            9987442 22 1110    022344457889999852 2      467999999998754321111  1111222 2368


Q ss_pred             EEEEEcccccCCc----cCCcEEEEeCCCCCeeeccccccCC-CceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceee
Q 040145          255 KLLVTEGWLWPFF----VSPRGQVYDPSTDNWESMAVGLREG-WTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWET  327 (402)
Q Consensus       255 ~ly~~gG~~~~~~----~~~~~~~yd~~~~~W~~~~~~~~~~-~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~  327 (402)
                      ++|+.........    ....+.++|+++++....-. .+.. .....+..  ++.+|+..+    .+++||+++.+...
T Consensus       184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~-~~~g~~p~~la~~~d~~~lyv~~~----~v~~~d~~t~~~~~  258 (328)
T 3dsm_A          184 KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK-FKLGDWPSEVQLNGTRDTLYWINN----DIWRMPVEADRVPV  258 (328)
T ss_dssp             EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE-CCTTCCCEEEEECTTSCEEEEESS----SEEEEETTCSSCCS
T ss_pred             CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe-cCCCCCceeEEEecCCCEEEEEcc----EEEEEECCCCceee
Confidence            9888764321100    02579999999887553211 2211 11122333  466777643    79999998876532


Q ss_pred             cCCCCCCccccCCeEEEE--eCCEEEEEecCceeeeEEEEecccc
Q 040145          328 IEGPPLPEQICKPFAVNA--CDCRVYVVGRNLHVAVGHITRLSTS  370 (402)
Q Consensus       328 ~~~~~~p~~~~~~~~~~~--~~~~i~v~GG~~~~~~~~v~~~~~~  370 (402)
                      ..  ..+.......++++  .+++|||....+....+.|.+||+.
T Consensus       259 ~~--~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          259 RP--FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             SC--SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             ee--eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            22  11211133445655  4789999974333345679999875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.59  E-value=6.1e-05  Score=68.17  Aligned_cols=218  Identities=11%  Similarity=-0.011  Sum_probs=127.8

Q ss_pred             CceeEEEeecCCCcEEeCC-----CCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCce-eecC
Q 040145          117 GKIQWQVLDLTHYCWHTIP-----AMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRW-TVMN  190 (402)
Q Consensus       117 ~~~~~~~~d~~~~~W~~l~-----~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W-~~~~  190 (402)
                      ....+..||+.+.+...--     ..+...    ...+.+.  .++++|+....       .+.+.++|+.|++- ..++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~----~~~~i~~--~~~~lyv~~~~-------~~~v~viD~~t~~~~~~i~   81 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGD----VAQSMVI--RDGIGWIVVNN-------SHVIFAIDINTFKEVGRIT   81 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBS----CEEEEEE--ETTEEEEEEGG-------GTEEEEEETTTCCEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCc----cceEEEE--ECCEEEEEEcC-------CCEEEEEECcccEEEEEcC
Confidence            3556889999998875421     011000    1123333  48999998753       34899999999875 3343


Q ss_pred             CCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCC----CcceeEEEECCEEEEEcccccC
Q 040145          191 KMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTN----MASYDAAVLDGKLLVTEGWLWP  265 (402)
Q Consensus       191 ~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~----~~~~~~~~~~g~ly~~gG~~~~  265 (402)
                      ..   .....++. -++++|+....      ...+.++|+.+++-...-+....    ..-...+..++++|+....   
T Consensus        82 ~~---~~p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~---  149 (328)
T 3dsm_A           82 GF---TSPRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS---  149 (328)
T ss_dssp             CC---SSEEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT---
T ss_pred             CC---CCCcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC---
Confidence            22   22334444 67899998743      46799999999875421111110    0122334468899998521   


Q ss_pred             CccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC---------CcEEEEEeCCCCceeecCCCCCCcc
Q 040145          266 FFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE---------RMKLKVYDPSTDSWETIEGPPLPEQ  336 (402)
Q Consensus       266 ~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~---------~~~~~~yd~~~~~W~~~~~~~~p~~  336 (402)
                        ..+.+.++|+++++....-. ....-.+....-+|++|+.....         ...++++|+++.+....-  .++..
T Consensus       150 --~~~~v~viD~~t~~~~~~i~-~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~--~~~~g  224 (328)
T 3dsm_A          150 --YQNRILKIDTETDKVVDELT-IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF--KFKLG  224 (328)
T ss_dssp             --TCCEEEEEETTTTEEEEEEE-CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE--ECCTT
T ss_pred             --CCCEEEEEECCCCeEEEEEE-cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE--ecCCC
Confidence              12479999999887543221 11111222233468888875432         268999999988765322  23221


Q ss_pred             ccCCeEEEEe--CCEEEEEecCceeeeEEEEecccccc
Q 040145          337 ICKPFAVNAC--DCRVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       337 ~~~~~~~~~~--~~~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                       .....++..  ++.||+..+       .|+.+|+...
T Consensus       225 -~~p~~la~~~d~~~lyv~~~-------~v~~~d~~t~  254 (328)
T 3dsm_A          225 -DWPSEVQLNGTRDTLYWINN-------DIWRMPVEAD  254 (328)
T ss_dssp             -CCCEEEEECTTSCEEEEESS-------SEEEEETTCS
T ss_pred             -CCceeEEEecCCCEEEEEcc-------EEEEEECCCC
Confidence             233455554  567888755       5778887554

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.56  E-value=6.3e-08  Score=61.98  Aligned_cols=43  Identities=26%  Similarity=0.414  Sum_probs=38.0

Q ss_pred             CCCCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHh
Q 040145           50 EPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERF   93 (402)
Q Consensus        50 ~~~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~   93 (402)
                      ...|..||+|++.+||.+||..++.++..|||+|+.++.++ .+
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~-~l   48 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE-SL   48 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCG-GG
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh-HH
Confidence            44688999999999999999999999999999999999988 55

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.49  E-value=2.8e-05  Score=66.97  Aligned_cols=193  Identities=14%  Similarity=0.046  Sum_probs=117.4

Q ss_pred             CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145          146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ..|.......++.||+..|..+     .+.+.++|+.|++-..--+++..-...+++..+++||+.-..      .+.++
T Consensus        42 ~~ftqGL~~~~~~LyestG~~g-----~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~------~~~v~  110 (262)
T 3nol_A           42 KAFTEGFFYRNGYFYESTGLNG-----RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK------NGLGF  110 (262)
T ss_dssp             TCEEEEEEEETTEEEEEEEETT-----EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEE
T ss_pred             CcccceEEEECCEEEEECCCCC-----CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee------CCEEE
Confidence            3344433334889999998732     458999999999755433444444455678889999999764      67899


Q ss_pred             EEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCee-ecccc---ccCCCceeEEEEC
Q 040145          226 VLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVG---LREGWTGSSVVVY  301 (402)
Q Consensus       226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~---~~~~~~~~~~~~~  301 (402)
                      +||+.|.+-.  ..++.+..+.+.+.-++.+|+.-|       .+.+..+|+++.+-. .+...   .+.....-....+
T Consensus       111 v~D~~t~~~~--~ti~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~  181 (262)
T 3nol_A          111 VWNIRNLRQV--RSFNYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVD  181 (262)
T ss_dssp             EEETTTCCEE--EEEECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEET
T ss_pred             EEECccCcEE--EEEECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEEC
Confidence            9999987643  222333355555554667888655       247999999986533 33321   1111112233459


Q ss_pred             CEEEEEeccCCcEEEEEeCCCCc---eeecCCCCC-----CccccCCeEEEEe--CCEEEEEecCcee
Q 040145          302 EHLFVVSELERMKLKVYDPSTDS---WETIEGPPL-----PEQICKPFAVNAC--DCRVYVVGRNLHV  359 (402)
Q Consensus       302 ~~l~~~gg~~~~~~~~yd~~~~~---W~~~~~~~~-----p~~~~~~~~~~~~--~~~i~v~GG~~~~  359 (402)
                      |+||+- -...+.|.+.|+++.+   |..+.++..     ........+++..  ++++||.|-....
T Consensus       182 G~lyan-~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~  248 (262)
T 3nol_A          182 GEIFAN-VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPK  248 (262)
T ss_dssp             TEEEEE-ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred             CEEEEE-EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence            999954 4447799999999875   333332110     0001122345443  5788888875433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.38  E-value=7e-05  Score=64.52  Aligned_cols=188  Identities=10%  Similarity=0.062  Sum_probs=114.7

Q ss_pred             CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145          146 HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       146 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ..|.......++.||+..|..       ..+.++|+.|++-..-- ++..-...+++..+++||+....      .+.++
T Consensus        54 ~~ftqGL~~~~~~Ly~stG~~-------g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~------~~~v~  119 (268)
T 3nok_A           54 NAFTQGLVFHQGHFFESTGHQ-------GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT------EGLLF  119 (268)
T ss_dssp             TCCEEEEEEETTEEEEEETTT-------TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS------SCEEE
T ss_pred             ccccceEEEECCEEEEEcCCC-------CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc------CCEEE
Confidence            344443333489999999873       24999999999754322 44333445677889999999664      57899


Q ss_pred             EEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCee-ecccc---ccCCCceeEEEEC
Q 040145          226 VLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVG---LREGWTGSSVVVY  301 (402)
Q Consensus       226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~---~~~~~~~~~~~~~  301 (402)
                      +||+.|.+-..  .++.+..+.+.+.-+++||+.-|       .+.+..+|+++.+-. .+...   .+.....-....+
T Consensus       120 V~D~~Tl~~~~--ti~~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~d  190 (268)
T 3nok_A          120 TWSGMPPQRER--TTRYSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECAN  190 (268)
T ss_dssp             EEETTTTEEEE--EEECSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET
T ss_pred             EEECCcCcEEE--EEeCCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeC
Confidence            99999876432  22333345666666778998865       248999999987543 23221   1111112223459


Q ss_pred             CEEEEEeccCCcEEEEEeCCCCc---eeecCCCC------CCccccCCeEEEEe--CCEEEEEecCc
Q 040145          302 EHLFVVSELERMKLKVYDPSTDS---WETIEGPP------LPEQICKPFAVNAC--DCRVYVVGRNL  357 (402)
Q Consensus       302 ~~l~~~gg~~~~~~~~yd~~~~~---W~~~~~~~------~p~~~~~~~~~~~~--~~~i~v~GG~~  357 (402)
                      |+||+ .-...+.|.+.|+++.+   |..+.++.      .........+++..  +++|||.|-..
T Consensus       191 G~lya-nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~W  256 (268)
T 3nok_A          191 GVIYA-NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLW  256 (268)
T ss_dssp             TEEEE-EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTC
T ss_pred             CEEEE-EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCC
Confidence            99985 34447799999999875   33333110      00011122344443  57888888744

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.24  E-value=0.0027  Score=58.17  Aligned_cols=231  Identities=14%  Similarity=0.152  Sum_probs=129.6

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCC-CCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCK-DKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKY  179 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~-~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~  179 (402)
                      .++.+|+...     ...+++||+.+.+  |+.-...... ...............++.||+....        ..++.+
T Consensus        52 ~~~~v~~~~~-----~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~--------g~l~a~  118 (376)
T 3q7m_A           52 ADNVVYAADR-----AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK--------AQVYAL  118 (376)
T ss_dssp             ETTEEEEECT-----TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT--------SEEEEE
T ss_pred             ECCEEEEEcC-----CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC--------CEEEEE
Confidence            4677777642     2358899998765  7543211100 0000122222222248888886432        379999


Q ss_pred             ECCCCc--eeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCC--CCcceeEEEEC
Q 040145          180 EMQKNR--WTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGT--NMASYDAAVLD  253 (402)
Q Consensus       180 d~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~~~~~~~~~~~  253 (402)
                      |+.|++  |+.-..-.   .....+..++.+|+...       ...+..||..+++  |+.-...+.  .+.....+..+
T Consensus       119 d~~tG~~~W~~~~~~~---~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~  188 (376)
T 3q7m_A          119 NTSDGTVAWQTKVAGE---ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAF  188 (376)
T ss_dssp             ETTTCCEEEEEECSSC---CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEET
T ss_pred             ECCCCCEEEEEeCCCc---eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEEC
Confidence            999885  76532211   12223456888887543       3578999998876  876432221  11123344557


Q ss_pred             CEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCC---------CceeEEEECCEEEEEeccCCcEEEEEeCCC
Q 040145          254 GKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREG---------WTGSSVVVYEHLFVVSELERMKLKVYDPST  322 (402)
Q Consensus       254 g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~---------~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~  322 (402)
                      +.+|+...       ...+..||+.+++  |+.-.. .+..         .....+..++.+|+.+.  ...+..+|+++
T Consensus       189 ~~v~~g~~-------~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~--~g~l~~~d~~t  258 (376)
T 3q7m_A          189 GAAVVGGD-------NGRVSAVLMEQGQMIWQQRIS-QATGSTEIDRLSDVDTTPVVVNGVVFALAY--NGNLTALDLRS  258 (376)
T ss_dssp             TEEEECCT-------TTEEEEEETTTCCEEEEEECC-C-----------CCCCCCEEETTEEEEECT--TSCEEEEETTT
T ss_pred             CEEEEEcC-------CCEEEEEECCCCcEEEEEecc-cCCCCcccccccccCCCcEEECCEEEEEec--CcEEEEEECCC
Confidence            88777322       1268999998764  765322 1111         11222567888887642  34789999977


Q ss_pred             C--ceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEEE
Q 040145          323 D--SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVV  383 (402)
Q Consensus       323 ~--~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~  383 (402)
                      .  .|+.-.    +    .....+..++.||+....     +.++.+|+...    ...|+.-
T Consensus       259 G~~~w~~~~----~----~~~~~~~~~~~l~~~~~~-----g~l~~~d~~tG----~~~w~~~  304 (376)
T 3q7m_A          259 GQIMWKREL----G----SVNDFIVDGNRIYLVDQN-----DRVMALTIDGG----VTLWTQS  304 (376)
T ss_dssp             CCEEEEECC----C----CEEEEEEETTEEEEEETT-----CCEEEEETTTC----CEEEEEC
T ss_pred             CcEEeeccC----C----CCCCceEECCEEEEEcCC-----CeEEEEECCCC----cEEEeec
Confidence            6  476532    1    123556678999987652     34777876433    3478764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.23  E-value=0.00095  Score=57.97  Aligned_cols=183  Identities=13%  Similarity=0.041  Sum_probs=108.4

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR  235 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  235 (402)
                      ++.||+..|..     ..+.+.++|+.|++-...-+++......+++..+++||+....      .+.+.+||+.|.+= 
T Consensus        31 dg~Lyvstg~~-----~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~------~~~v~viD~~t~~v-   98 (266)
T 2iwa_A           31 NDTLFESTGLY-----GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL------KNIGFIYDRRTLSN-   98 (266)
T ss_dssp             TTEEEEEECST-----TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT------CSEEEEEETTTTEE-
T ss_pred             CCeEEEECCCC-----CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec------CCEEEEEECCCCcE-
Confidence            48999988752     2458999999999755433333333445677788999999754      57899999998753 


Q ss_pred             EcCCCCCC-CcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCe-eecccc---ccCCCceeEEEECCEEEEEecc
Q 040145          236 TIASMGTN-MASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVG---LREGWTGSSVVVYEHLFVVSEL  310 (402)
Q Consensus       236 ~~~~~~~~-~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~---~~~~~~~~~~~~~~~l~~~gg~  310 (402)
                       +..++.+ ..+.+.+.-++++|+..|       .+.+..+|+++.+- ..+...   .+..........++++|+--. 
T Consensus        99 -~~~i~~g~~~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~-  169 (266)
T 2iwa_A           99 -IKNFTHQMKDGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIW-  169 (266)
T ss_dssp             -EEEEECCSSSCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET-
T ss_pred             -EEEEECCCCCeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecC-
Confidence             2222222 233343333556887654       24899999988653 233321   111122223334899986543 


Q ss_pred             CCcEEEEEeCCCCc---eeecCCCC------CCccccCCeEEEEe--CCEEEEEecCcee
Q 040145          311 ERMKLKVYDPSTDS---WETIEGPP------LPEQICKPFAVNAC--DCRVYVVGRNLHV  359 (402)
Q Consensus       311 ~~~~~~~yd~~~~~---W~~~~~~~------~p~~~~~~~~~~~~--~~~i~v~GG~~~~  359 (402)
                      ..+.|.+.|+++.+   |..++++.      .........+++..  ++++||.|+....
T Consensus       170 ~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~  229 (266)
T 2iwa_A          170 QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK  229 (266)
T ss_dssp             TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred             CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence            36799999999874   22222100      00000122355443  5689999986544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.22  E-value=0.0033  Score=57.64  Aligned_cols=224  Identities=15%  Similarity=0.138  Sum_probs=127.6

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE  180 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d  180 (402)
                      .++.+|+...     ...+++||+.+.+  |+.-..-.       .....++.  ++.||+...        ...++.||
T Consensus       102 ~~~~v~v~~~-----~g~l~a~d~~tG~~~W~~~~~~~-------~~~~p~~~--~~~v~v~~~--------~g~l~~~d  159 (376)
T 3q7m_A          102 SGGHVYIGSE-----KAQVYALNTSDGTVAWQTKVAGE-------ALSRPVVS--DGLVLIHTS--------NGQLQALN  159 (376)
T ss_dssp             ETTEEEEEET-----TSEEEEEETTTCCEEEEEECSSC-------CCSCCEEE--TTEEEEECT--------TSEEEEEE
T ss_pred             eCCEEEEEcC-----CCEEEEEECCCCCEEEEEeCCCc-------eEcCCEEE--CCEEEEEcC--------CCeEEEEE
Confidence            4566776532     2358899998776  75422111       11111222  777877543        23799999


Q ss_pred             CCCCc--eeecCCCcc--cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCC--------cc
Q 040145          181 MQKNR--WTVMNKMIT--ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNM--------AS  246 (402)
Q Consensus       181 ~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~--------~~  246 (402)
                      +.|++  |+.-...+.  .+.....+..++.+|+.. .      ...+..||+.+++  |+.-...+...        ..
T Consensus       160 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~-~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~  232 (376)
T 3q7m_A          160 EADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGG-D------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVD  232 (376)
T ss_dssp             TTTCCEEEEEECCC-----CCCCCCEEETTEEEECC-T------TTEEEEEETTTCCEEEEEECCC-----------CCC
T ss_pred             CCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEc-C------CCEEEEEECCCCcEEEEEecccCCCCcccccccccC
Confidence            99886  876432221  122234455577777632 2      3468999998775  77543222111        11


Q ss_pred             eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          247 YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       247 ~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      ...+..++.+|+.+..       ..+.++|+.+++  |+.-..     .....+..++.+|+...  ...++.||+.+.+
T Consensus       233 ~~p~~~~~~v~~~~~~-------g~l~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~l~~~~~--~g~l~~~d~~tG~  298 (376)
T 3q7m_A          233 TTPVVVNGVVFALAYN-------GNLTALDLRSGQIMWKRELG-----SVNDFIVDGNRIYLVDQ--NDRVMALTIDGGV  298 (376)
T ss_dssp             CCCEEETTEEEEECTT-------SCEEEEETTTCCEEEEECCC-----CEEEEEEETTEEEEEET--TCCEEEEETTTCC
T ss_pred             CCcEEECCEEEEEecC-------cEEEEEECCCCcEEeeccCC-----CCCCceEECCEEEEEcC--CCeEEEEECCCCc
Confidence            2334568888886531       368999998764  764321     11223566889988754  3479999998764


Q ss_pred             --eeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEEE
Q 040145          325 --WETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVV  383 (402)
Q Consensus       325 --W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~  383 (402)
                        |+.-.   ++.  ......+..++.||+....     +.++.+|+...    +..|+.-
T Consensus       299 ~~w~~~~---~~~--~~~~~~~~~~~~l~v~~~~-----g~l~~~d~~tG----~~~~~~~  345 (376)
T 3q7m_A          299 TLWTQSD---LLH--RLLTSPVLYNGNLVVGDSE-----GYLHWINVEDG----RFVAQQK  345 (376)
T ss_dssp             EEEEECT---TTT--SCCCCCEEETTEEEEECTT-----SEEEEEETTTC----CEEEEEE
T ss_pred             EEEeecc---cCC--CcccCCEEECCEEEEEeCC-----CeEEEEECCCC----cEEEEEe
Confidence              76532   211  1223445568888886542     35888886443    3467653

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.20  E-value=1.1e-06  Score=77.06  Aligned_cols=49  Identities=29%  Similarity=0.628  Sum_probs=43.8

Q ss_pred             CCCCCCCcHHHHHHhhccCccchhh-hhhhccHhHHHhhcCchHhHHHHhh
Q 040145           50 EPFIPGLPDDVALNCLLRLPVESHA-ACRAVCKRWHLLLGNKERFFTRRKE   99 (402)
Q Consensus        50 ~~~~~~Lp~dl~~~il~rlp~~~l~-~~~~v~k~W~~l~~s~~~~~~~r~~   99 (402)
                      ...+..||+||+.+||++||.++|. ++++|||+|+.++.++ .|...+..
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~-~~w~~~~~   97 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGA-PLWLLKCQ   97 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSH-HHHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcCh-HHHHHHhh
Confidence            4578899999999999999999999 9999999999999999 88665543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.03  E-value=0.0019  Score=55.99  Aligned_cols=225  Identities=16%  Similarity=0.080  Sum_probs=115.0

Q ss_pred             CCeEEE-EEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145          104 DPWLFV-FAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       104 ~~~l~~-~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      ++.+|+ ...    ....+.+||+.+............     .-.+. ++..++.||+...        ...+++||+.
T Consensus        34 ~g~l~v~~~~----~~~~i~~~~~~~~~~~~~~~~~~~-----~p~~i-~~~~~g~l~v~~~--------~~~i~~~d~~   95 (270)
T 1rwi_B           34 AGNVYVTSEG----MYGRVVKLATGSTGTTVLPFNGLY-----QPQGL-AVDGAGTVYVTDF--------NNRVVTLAAG   95 (270)
T ss_dssp             TCCEEEEECS----SSCEEEEECC-----EECCCCSCC-----SCCCE-EECTTCCEEEEET--------TTEEEEECTT
T ss_pred             CCCEEEEccC----CCCcEEEecCCCcccceEeeCCcC-----Cccee-EECCCCCEEEEcC--------CCEEEEEeCC
Confidence            456777 421    223477888876655443321100     11233 3334667888764        1279999998


Q ss_pred             CCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEc
Q 040145          183 KNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTE  260 (402)
Q Consensus       183 t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~g  260 (402)
                      ++....+.... ......++.. ++++|+....      ...+.+||..+.......... ...-...+.- +|++|+..
T Consensus        96 ~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~  167 (270)
T 1rwi_B           96 SNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDNSGNVYVTD  167 (270)
T ss_dssp             CSCCEECCCCS-CSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCCS-CCSCCCEEECTTCCEEEEE
T ss_pred             CceEeeeecCC-cCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeecccc-CCCceeEEEeCCCCEEEEE
Confidence            87654432211 1122333333 5688887543      456888887766544332111 1111223332 67888875


Q ss_pred             ccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCcccc
Q 040145          261 GWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQIC  338 (402)
Q Consensus       261 G~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~  338 (402)
                      ..      ...+.+||+.+..-..... ... .....+.+  +|.+|+.... ...+.+||+.+..-....   ... ..
T Consensus       168 ~~------~~~i~~~~~~~~~~~~~~~-~~~-~~p~~i~~d~~g~l~v~~~~-~~~v~~~~~~~~~~~~~~---~~~-~~  234 (270)
T 1rwi_B          168 TD------NNRVVKLEAESNNQVVLPF-TDI-TAPWGIAVDEAGTVYVTEHN-TNQVVKLLAGSTTSTVLP---FTG-LN  234 (270)
T ss_dssp             GG------GTEEEEECTTTCCEEECCC-SSC-CSEEEEEECTTCCEEEEETT-TSCEEEECTTCSCCEECC---CCS-CS
T ss_pred             CC------CCEEEEEecCCCceEeecc-cCC-CCceEEEECCCCCEEEEECC-CCcEEEEcCCCCcceeec---cCC-CC
Confidence            43      2378999988765433321 111 11122333  5688876543 557999999776433322   111 12


Q ss_pred             CCeEEEE-eCCEEEEEecCceeeeEEEEeccccc
Q 040145          339 KPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSE  371 (402)
Q Consensus       339 ~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~  371 (402)
                      ...+++. .+|+||+....++.    |..|+..+
T Consensus       235 ~p~~i~~~~~g~l~v~~~~~~~----v~~~~~~~  264 (270)
T 1rwi_B          235 TPLAVAVDSDRTVYVADRGNDR----VVKLTSLE  264 (270)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTE----EEEECCCG
T ss_pred             CceeEEECCCCCEEEEECCCCE----EEEEcCCC
Confidence            2344444 46789988765443    66665433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.03  E-value=0.0056  Score=53.61  Aligned_cols=224  Identities=7%  Similarity=-0.005  Sum_probs=118.6

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+|+...    ....++.||+. .+...+. ++...    ......++..++.||+....       ...+++||+ +
T Consensus        67 ~g~l~v~~~----~~~~i~~~~~~-g~~~~~~-~~~~~----~~~~~i~~~~~g~l~v~~~~-------~~~i~~~d~-~  128 (299)
T 2z2n_A           67 DGEVWFTEN----AANKIGRITKK-GIIKEYT-LPNPD----SAPYGITEGPNGDIWFTEMN-------GNRIGRITD-D  128 (299)
T ss_dssp             TSCEEEEET----TTTEEEEECTT-SCEEEEE-CSSTT----CCEEEEEECTTSCEEEEETT-------TTEEEEECT-T
T ss_pred             CCCEEEeCC----CCCeEEEECCC-CcEEEEe-CCCcC----CCceeeEECCCCCEEEEecC-------CceEEEECC-C
Confidence            556777642    12347888886 4444432 11111    12233444346788887543       237899999 6


Q ss_pred             CceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEc
Q 040145          184 NRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTE  260 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~g  260 (402)
                      ++...............++.- ++.+|+....      ...+.+||+ +++..... .+..........+  +|.+|+..
T Consensus       129 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~  200 (299)
T 2z2n_A          129 GKIREYELPNKGSYPSFITLGSDNALWFTENQ------NNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVE  200 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEE
T ss_pred             CCEEEecCCCCCCCCceEEEcCCCCEEEEeCC------CCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEc
Confidence            665543211111222333333 5688887532      457899999 77766542 1211222223333  57888865


Q ss_pred             ccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCcccc
Q 040145          261 GWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQIC  338 (402)
Q Consensus       261 G~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~  338 (402)
                      ..      ...+.+||+ +++...+..+...... ..+.+  +|.+|+... ....+.+||+ +.+...+.   ++....
T Consensus       201 ~~------~~~i~~~~~-~g~~~~~~~~~~~~~~-~~i~~~~~g~l~v~~~-~~~~i~~~d~-~g~~~~~~---~~~~~~  267 (299)
T 2z2n_A          201 II------GNKIGRITT-SGEITEFKIPTPNARP-HAITAGAGIDLWFTEW-GANKIGRLTS-NNIIEEYP---IQIKSA  267 (299)
T ss_dssp             TT------TTEEEEECT-TCCEEEEECSSTTCCE-EEEEECSTTCEEEEET-TTTEEEEEET-TTEEEEEE---CSSSSC
T ss_pred             cC------CceEEEECC-CCcEEEEECCCCCCCc-eeEEECCCCCEEEecc-CCceEEEECC-CCceEEEe---CCCCCC
Confidence            32      237899999 7776654321111111 12333  678887642 3568999999 44544443   221112


Q ss_pred             CCeEEEEeCCEEEEEecCceeeeEEEEeccccc
Q 040145          339 KPFAVNACDCRVYVVGRNLHVAVGHITRLSTSE  371 (402)
Q Consensus       339 ~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~  371 (402)
                      ...+++..++.||+....     +.+..+++..
T Consensus       268 ~~~~i~~~~g~l~v~~~~-----~~l~~~~~~~  295 (299)
T 2z2n_A          268 EPHGICFDGETIWFAMEC-----DKIGKLTLIK  295 (299)
T ss_dssp             CEEEEEECSSCEEEEETT-----TEEEEEEEC-
T ss_pred             ccceEEecCCCEEEEecC-----CcEEEEEcCc
Confidence            233444467888887642     2366666543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.01  E-value=0.0063  Score=53.21  Aligned_cols=223  Identities=10%  Similarity=0.087  Sum_probs=113.7

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEE-ccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSI-PREGTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      ++.+|+....    ...+.+||+.......+.......... ..-..+++ ..++.||+.+..      ....+.+||+.
T Consensus        40 ~g~l~v~~~~----~~~i~~~d~~g~~~~~~~~~~~~~~~~-~~p~~i~~~~~~g~l~v~~~~------~~~~i~~~d~~  108 (286)
T 1q7f_A           40 QNDIIVADTN----NHRIQIFDKEGRFKFQFGECGKRDSQL-LYPNRVAVVRNSGDIIVTERS------PTHQIQIYNQY  108 (286)
T ss_dssp             TCCEEEEEGG----GTEEEEECTTSCEEEEECCBSSSTTCB-SSEEEEEEETTTTEEEEEECG------GGCEEEEECTT
T ss_pred             CCCEEEEECC----CCEEEEECCCCcEEEEecccCCCcccc-cCceEEEEEcCCCeEEEEcCC------CCCEEEEECCC
Confidence            4567776532    234788888755444443211111001 11223333 357899998742      12378999965


Q ss_pred             CCceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEE
Q 040145          183 KNRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVT  259 (402)
Q Consensus       183 t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~  259 (402)
                      ...-+.+... .......+++ -++++|+....      ...+.+||+.......+... ........+.+  +|.+|+.
T Consensus       109 g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          109 GQFVRKFGAT-ILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCS-KHLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             SCEEEEECTT-TCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECT-TTCSSEEEEEECSSSEEEEE
T ss_pred             CcEEEEecCc-cCCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCC-CccCCcEEEEECCCCCEEEE
Confidence            4433333221 1111233333 25688888653      45789999876554444211 11112233333  6889887


Q ss_pred             cccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccc
Q 040145          260 EGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQI  337 (402)
Q Consensus       260 gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~  337 (402)
                      ...      ...+.+||+.......+... ........+.+  +|++|+....+...+.+||+....-..+.. ..+.  
T Consensus       181 ~~~------~~~i~~~~~~g~~~~~~~~~-g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~-~~~~--  250 (286)
T 1q7f_A          181 DNR------AHCVKVFNYEGQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALES-KVKH--  250 (286)
T ss_dssp             EGG------GTEEEEEETTCCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEE-SSCC--
T ss_pred             ECC------CCEEEEEcCCCCEEEEEccC-CccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcc-cCCC--
Confidence            643      24789999865543333321 10011112333  688888765422389999987654444331 1111  


Q ss_pred             cCCeEEE-EeCCEEEEEec
Q 040145          338 CKPFAVN-ACDCRVYVVGR  355 (402)
Q Consensus       338 ~~~~~~~-~~~~~i~v~GG  355 (402)
                      ....+++ ..+|+|||...
T Consensus       251 ~~~~~i~~~~~g~l~vs~~  269 (286)
T 1q7f_A          251 AQCFDVALMDDGSVVLASK  269 (286)
T ss_dssp             SCEEEEEEETTTEEEEEET
T ss_pred             CcceeEEECCCCcEEEECC
Confidence            1223343 35789998853

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.91  E-value=0.0012  Score=60.77  Aligned_cols=220  Identities=17%  Similarity=0.144  Sum_probs=113.0

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      +..+|+.+..+    ..+.++|..+.+....-..+       .....+++..++ .||+.+..       ...+.+||..
T Consensus        43 g~~l~~~~~~d----~~i~v~d~~~~~~~~~~~~~-------~~v~~~~~spdg~~l~~~~~~-------~~~v~v~d~~  104 (391)
T 1l0q_A           43 GTKVYVANAHS----NDVSIIDTATNNVIATVPAG-------SSPQGVAVSPDGKQVYVTNMA-------SSTLSVIDTT  104 (391)
T ss_dssp             SSEEEEEEGGG----TEEEEEETTTTEEEEEEECS-------SSEEEEEECTTSSEEEEEETT-------TTEEEEEETT
T ss_pred             CCEEEEECCCC----CeEEEEECCCCeEEEEEECC-------CCccceEECCCCCEEEEEECC-------CCEEEEEECC
Confidence            44566665332    24788999887654432222       122334443344 56666543       2379999999


Q ss_pred             CCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CC-EEEE
Q 040145          183 KNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DG-KLLV  258 (402)
Q Consensus       183 t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g-~ly~  258 (402)
                      +++....-.  .......++..  +..+|+.++.      ...+.+||..+++....-...  ......+.. ++ .+|+
T Consensus       105 ~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~  174 (391)
T 1l0q_A          105 SNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNG------DKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDGTKVYV  174 (391)
T ss_dssp             TTEEEEEEE--CSSSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEE
T ss_pred             CCeEEEEEe--CCCCcceEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEecC--CCcceEEECCCCCEEEE
Confidence            886543221  12222334443  3367777754      457999999988754432211  111222222 44 5666


Q ss_pred             EcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEecc--CCcEEEEEeCCCCceeecCCCCCC
Q 040145          259 TEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSEL--ERMKLKVYDPSTDSWETIEGPPLP  334 (402)
Q Consensus       259 ~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~--~~~~~~~yd~~~~~W~~~~~~~~p  334 (402)
                      .++..      ..+.+||+.+++-...-.   .......+.+  +++.+++++.  ....+.+||+.+.+-...-  +..
T Consensus       175 ~~~~~------~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~  243 (391)
T 1l0q_A          175 ANFDS------MSISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI--PVG  243 (391)
T ss_dssp             EETTT------TEEEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE--ECC
T ss_pred             EeCCC------CEEEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE--ecC
Confidence            65532      368999998875433221   1111112222  4554444443  3568999999876433221  122


Q ss_pred             ccccCCeEEEE-eCC-EEEEEecCceeeeEEEEeccc
Q 040145          335 EQICKPFAVNA-CDC-RVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       335 ~~~~~~~~~~~-~~~-~i~v~GG~~~~~~~~v~~~~~  369 (402)
                         ....++.. .++ .||+.++.++.    +..+|.
T Consensus       244 ---~~~~~~~~s~dg~~l~~s~~~d~~----v~v~d~  273 (391)
T 1l0q_A          244 ---PDPAGIAVTPDGKKVYVALSFXNT----VSVIDT  273 (391)
T ss_dssp             ---SSEEEEEECTTSSEEEEEETTTTE----EEEEET
T ss_pred             ---CCccEEEEccCCCEEEEEcCCCCE----EEEEEC
Confidence               11223333 344 56677665433    455554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.90  E-value=0.01  Score=51.87  Aligned_cols=222  Identities=11%  Similarity=0.122  Sum_probs=119.5

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+|+...    ....+..||+. .......... ..    .....+++..++.+|+....       ...+++||+. 
T Consensus        25 ~g~l~v~~~----~~~~v~~~d~~-~~~~~~~~~~-~~----~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~-   86 (299)
T 2z2n_A           25 KGKVWITQH----KANMISCINLD-GKITEYPLPT-PD----AKVMCLTISSDGEVWFTENA-------ANKIGRITKK-   86 (299)
T ss_dssp             TSCEEEEET----TTTEEEEECTT-CCEEEEECSS-TT----CCEEEEEECTTSCEEEEETT-------TTEEEEECTT-
T ss_pred             CCCEEEEec----CCCcEEEEcCC-CCeEEecCCc-cc----CceeeEEECCCCCEEEeCCC-------CCeEEEECCC-
Confidence            556776542    12347889988 6666543211 11    22233444346788887542       2368999986 


Q ss_pred             CceeecCCCc-ccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEE
Q 040145          184 NRWTVMNKMI-TARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVT  259 (402)
Q Consensus       184 ~~W~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~  259 (402)
                      ++.+... ++ .......++.. ++.+|+....      ...+.+||+ ++....... +...........  +|.+|+.
T Consensus        87 g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~  157 (299)
T 2z2n_A           87 GIIKEYT-LPNPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYEL-PNKGSYPSFITLGSDNALWFT  157 (299)
T ss_dssp             SCEEEEE-CSSTTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEEC-SSTTCCEEEEEECTTSCEEEE
T ss_pred             CcEEEEe-CCCcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecC-CCCCCCCceEEEcCCCCEEEE
Confidence            5554432 11 11222334443 5788887643      356889999 666554421 111122223333  6788886


Q ss_pred             cccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccc
Q 040145          260 EGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQI  337 (402)
Q Consensus       260 gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~  337 (402)
                      ...      ...+.+||+ +++...+..+.... ....+.+  +|++|+... ....+.+||+ +.+...+.   ++...
T Consensus       158 ~~~------~~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~g~~~~~~---~~~~~  224 (299)
T 2z2n_A          158 ENQ------NNAIGRITE-SGDITEFKIPTPAS-GPVGITKGNDDALWFVEI-IGNKIGRITT-SGEITEFK---IPTPN  224 (299)
T ss_dssp             ETT------TTEEEEECT-TCCEEEEECSSTTC-CEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEEEEE---CSSTT
T ss_pred             eCC------CCEEEEEcC-CCcEEEeeCCCCCC-cceeEEECCCCCEEEEcc-CCceEEEECC-CCcEEEEE---CCCCC
Confidence            532      236899999 77776542211111 1112333  578887643 2568999999 77766653   22111


Q ss_pred             cCCeEEEE-eCCEEEEEecCceeeeEEEEeccc
Q 040145          338 CKPFAVNA-CDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       338 ~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      ....+++. .+|+||+.....+    .+..+|+
T Consensus       225 ~~~~~i~~~~~g~l~v~~~~~~----~i~~~d~  253 (299)
T 2z2n_A          225 ARPHAITAGAGIDLWFTEWGAN----KIGRLTS  253 (299)
T ss_dssp             CCEEEEEECSTTCEEEEETTTT----EEEEEET
T ss_pred             CCceeEEECCCCCEEEeccCCc----eEEEECC
Confidence            23334444 3678888763322    3666665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.88  E-value=0.0032  Score=53.66  Aligned_cols=166  Identities=15%  Similarity=0.102  Sum_probs=106.5

Q ss_pred             cceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEe
Q 040145          197 SFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYD  276 (402)
Q Consensus       197 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd  276 (402)
                      ...++...++.+|+..|..+    .+.+.++|++|++-..--+++....+.+.+..+++||+....      .+.+++||
T Consensus        22 ftqGL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~------~~~v~v~D   91 (243)
T 3mbr_X           22 FTEGLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR------NHEGFVYD   91 (243)
T ss_dssp             CEEEEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEE
T ss_pred             ccccEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee------CCEEEEEE
Confidence            33477778999999988644    467999999999876555666666677778889999998653      35899999


Q ss_pred             CCCCCee-eccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCcee-ecCCCCCCccccCCeEEEEeCCEEEEE
Q 040145          277 PSTDNWE-SMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDSWE-TIEGPPLPEQICKPFAVNACDCRVYVV  353 (402)
Q Consensus       277 ~~~~~W~-~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~W~-~~~~~~~p~~~~~~~~~~~~~~~i~v~  353 (402)
                      +++.+-. +++. ..   .+.+ +.-+++||+.-|  ...++.+|+++.+-. .+....-+......-.+...+|+||+-
T Consensus        92 ~~tl~~~~ti~~-~~---~Gwglt~dg~~L~vSdg--s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan  165 (243)
T 3mbr_X           92 LATLTPRARFRY-PG---EGWALTSDDSHLYMSDG--TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLAN  165 (243)
T ss_dssp             TTTTEEEEEEEC-SS---CCCEEEECSSCEEEECS--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred             CCcCcEEEEEeC-CC---CceEEeeCCCEEEEECC--CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEE
Confidence            9886533 2332 12   3334 334567887765  568999999987533 222101111112222344568998854


Q ss_pred             ecCceeeeEEEEecccccccCceeeeEEEEeC
Q 040145          354 GRNLHVAVGHITRLSTSEKKWSFSVQWQVVDA  385 (402)
Q Consensus       354 GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~  385 (402)
                      --.    .++|.+.||...   +-..|..+..
T Consensus       166 vw~----s~~I~vIDp~tG---~V~~~idl~~  190 (243)
T 3mbr_X          166 VWL----TSRIARIDPASG---KVVAWIDLQA  190 (243)
T ss_dssp             ETT----TTEEEEECTTTC---BEEEEEECGG
T ss_pred             ECC----CCeEEEEECCCC---CEEEEEECCc
Confidence            322    236888888665   4556666553

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.88  E-value=0.011  Score=51.70  Aligned_cols=223  Identities=14%  Similarity=0.119  Sum_probs=120.8

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+|+...    ....+..||+. .+...+. ++...    .....+++..++.+|+....       ...+.+||+. 
T Consensus        30 ~g~l~v~~~----~~~~v~~~~~~-~~~~~~~-~~~~~----~~~~~i~~~~~g~l~v~~~~-------~~~v~~~d~~-   91 (300)
T 2qc5_A           30 DGKVWFTQH----KANKISSLDQS-GRIKEFE-VPTPD----AKVMCLIVSSLGDIWFTENG-------ANKIGKLSKK-   91 (300)
T ss_dssp             TSCEEEEET----TTTEEEEECTT-SCEEEEE-CSSTT----CCEEEEEECTTSCEEEEETT-------TTEEEEECTT-
T ss_pred             CCCEEEEcC----CCCeEEEECCC-CceEEEE-CCCCC----CcceeEEECCCCCEEEEecC-------CCeEEEECCC-
Confidence            566777642    22357889988 6665532 12110    12233444346788887542       2379999998 


Q ss_pred             CceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEc
Q 040145          184 NRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTE  260 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~g  260 (402)
                      ++++.............++.- ++++|+....      ...+..||+. ++..... ++...........  +|++|+..
T Consensus        92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~  163 (300)
T 2qc5_A           92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTE  163 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEE
T ss_pred             CCeEEecCCCCCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEe
Confidence            766543211111222334433 5788887643      3568899987 6555432 2212222223333  57788865


Q ss_pred             ccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCcccc
Q 040145          261 GWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQIC  338 (402)
Q Consensus       261 G~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~  338 (402)
                      ..      ...+.+||+ +++...+..+... .....+.+  +|.+|+... ....+.+||+ +.++....   ++....
T Consensus       164 ~~------~~~i~~~~~-~g~~~~~~~~~~~-~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~~~~---~~~~~~  230 (300)
T 2qc5_A          164 NQ------NNSIGRITN-TGKLEEYPLPTNA-AAPVGITSGNDGALWFVEI-MGNKIGRITT-TGEISEYD---IPTPNA  230 (300)
T ss_dssp             TT------TTEEEEECT-TCCEEEEECSSTT-CCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEEEEE---CSSTTC
T ss_pred             cC------CCeEEEECC-CCcEEEeeCCCCC-CCcceEEECCCCCEEEEcc-CCCEEEEEcC-CCcEEEEE---CCCCCC
Confidence            32      236899998 6666654321111 11122333  678887643 3557999999 55565543   221112


Q ss_pred             CCeEEEE-eCCEEEEEecCceeeeEEEEeccc
Q 040145          339 KPFAVNA-CDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       339 ~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      ...+++. .+|+||+.....+    .+..|++
T Consensus       231 ~~~~i~~d~~g~l~v~~~~~~----~i~~~~~  258 (300)
T 2qc5_A          231 RPHAITAGKNSEIWFTEWGAN----QIGRITN  258 (300)
T ss_dssp             CEEEEEECSTTCEEEEETTTT----EEEEECT
T ss_pred             CceEEEECCCCCEEEeccCCC----eEEEECC
Confidence            3344444 3678888774322    3677776

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.86  E-value=0.014  Score=52.38  Aligned_cols=232  Identities=12%  Similarity=0.011  Sum_probs=116.5

Q ss_pred             CCeEEEEEEeCC--CCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEEC
Q 040145          104 DPWLFVFAFHKC--TGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM  181 (402)
Q Consensus       104 ~~~l~~~gg~~~--~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~  181 (402)
                      +..+|+......  .....++++|+.+.+....-+...      ...+.+....++.+|+.+..       ...+.+||+
T Consensus        52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~v~~~~-------~~~v~~~d~  118 (353)
T 3vgz_A           52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL------KPFGATINNTTQTLWFGNTV-------NSAVTAIDA  118 (353)
T ss_dssp             TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS------CCCSEEEETTTTEEEEEETT-------TTEEEEEET
T ss_pred             CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC------CcceEEECCCCCEEEEEecC-------CCEEEEEeC
Confidence            567777653211  124568899998876433222221      11233443334568887654       237999999


Q ss_pred             CCCceeecCCCccc--------ccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE
Q 040145          182 QKNRWTVMNKMITA--------RSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV  251 (402)
Q Consensus       182 ~t~~W~~~~~~~~~--------r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~  251 (402)
                      .+++-...-+....        .....++..  ++.+|+.+...     ...+++||+.+.+-...-+... ......+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~  192 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTG-KMSTGLAL  192 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCC-TTCCCCEE
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCC-CccceEEE
Confidence            98864322111111        112334443  35677776321     3568999998876433211111 11112222


Q ss_pred             -ECC-EEEEEcccccCCccCCcEEEEeCCCCCeeec-cccc--cCCCceeEEE-ECC-EEEEEeccCCcEEEEEeCCCCc
Q 040145          252 -LDG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESM-AVGL--REGWTGSSVV-VYE-HLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       252 -~~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~--~~~~~~~~~~-~~~-~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                       -+| .+|+...       ...+.+||+.+++-... ....  +.......+. -++ .+|+. ......+.+||+.+.+
T Consensus       193 s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~v~~~d~~~~~  264 (353)
T 3vgz_A          193 DSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT-DSKAAEVLVVDTRNGN  264 (353)
T ss_dssp             ETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE-ESSSSEEEEEETTTCC
T ss_pred             CCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE-eCCCCEEEEEECCCCc
Confidence             244 4666543       13688999988753322 1111  1111111222 244 46655 4446789999998876


Q ss_pred             eeecCCCCCCccccCCeEEEEeC-CEEEEEecCceeeeEEEEeccccc
Q 040145          325 WETIEGPPLPEQICKPFAVNACD-CRVYVVGRNLHVAVGHITRLSTSE  371 (402)
Q Consensus       325 W~~~~~~~~p~~~~~~~~~~~~~-~~i~v~GG~~~~~~~~v~~~~~~~  371 (402)
                      ....-  +.+.  .. ......+ +.+|+.+...+    .+..+|...
T Consensus       265 ~~~~~--~~~~--~~-~~~~s~dg~~l~v~~~~~~----~v~~~d~~~  303 (353)
T 3vgz_A          265 ILAKV--AAPE--SL-AVLFNPARNEAYVTHRQAG----KVSVIDAKS  303 (353)
T ss_dssp             EEEEE--ECSS--CC-CEEEETTTTEEEEEETTTT----EEEEEETTT
T ss_pred             EEEEE--EcCC--Cc-eEEECCCCCEEEEEECCCC----eEEEEECCC
Confidence            54332  2322  11 2222334 45788775443    366666543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.81  E-value=0.011  Score=52.26  Aligned_cols=209  Identities=12%  Similarity=0.124  Sum_probs=105.1

Q ss_pred             EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-e
Q 040145          121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF-F  199 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~-~  199 (402)
                      +.+||..+.+....-.-.  .    .....+....++.+++.|+.+       ..+.+||..+++-...  +...... .
T Consensus        47 i~iw~~~~~~~~~~~~~h--~----~~v~~~~~~~~~~~l~s~~~d-------~~i~vwd~~~~~~~~~--~~~~~~~v~  111 (312)
T 4ery_A           47 IKIWGAYDGKFEKTISGH--K----LGISDVAWSSDSNLLVSASDD-------KTLKIWDVSSGKCLKT--LKGHSNYVF  111 (312)
T ss_dssp             EEEEETTTCCEEEEECCC--S----SCEEEEEECTTSSEEEEEETT-------SEEEEEETTTCCEEEE--EECCSSCEE
T ss_pred             EEEEeCCCcccchhhccC--C----CceEEEEEcCCCCEEEEECCC-------CEEEEEECCCCcEEEE--EcCCCCCEE
Confidence            667787776654321111  0    223444554567777777752       2789999988753221  1111111 1


Q ss_pred             EEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEe
Q 040145          200 ASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYD  276 (402)
Q Consensus       200 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd  276 (402)
                      .+... ++.+++.|+.      ...+.+||..+++-...  ++........+.+  ++.+++.|+.+      ..+..||
T Consensus       112 ~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd  177 (312)
T 4ery_A          112 CCNFNPQSNLIVSGSF------DESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYD------GLCRIWD  177 (312)
T ss_dssp             EEEECSSSSEEEEEET------TSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEE
T ss_pred             EEEEcCCCCEEEEEeC------CCcEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCC------CcEEEEE
Confidence            22222 4566666765      34688999987653221  2211122222333  66777777653      3688999


Q ss_pred             CCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEec
Q 040145          277 PSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGR  355 (402)
Q Consensus       277 ~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG  355 (402)
                      +.+++-...-........... ..-+++.++.|+. ...+.+||..+.+-...-.................++.+++.|+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~  256 (312)
T 4ery_A          178 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS  256 (312)
T ss_dssp             TTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET-TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECC
T ss_pred             CCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC-CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC
Confidence            987654321110111111111 1225666666665 56899999987653322100111111111223335677788887


Q ss_pred             Ccee
Q 040145          356 NLHV  359 (402)
Q Consensus       356 ~~~~  359 (402)
                      .++.
T Consensus       257 ~dg~  260 (312)
T 4ery_A          257 EDNL  260 (312)
T ss_dssp             TTSC
T ss_pred             CCCE
Confidence            6554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.78  E-value=0.016  Score=50.64  Aligned_cols=220  Identities=11%  Similarity=0.071  Sum_probs=117.9

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+|+...    ....+..||+. .+...+.. +...    ......++..++.+|+....       ...+++||+. 
T Consensus        72 ~g~l~v~~~----~~~~v~~~d~~-g~~~~~~~-~~~~----~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~-  133 (300)
T 2qc5_A           72 LGDIWFTEN----GANKIGKLSKK-GGFTEYPL-PQPD----SGPYGITEGLNGDIWFTQLN-------GDRIGKLTAD-  133 (300)
T ss_dssp             TSCEEEEET----TTTEEEEECTT-SCEEEEEC-SSTT----CCEEEEEECSTTCEEEEETT-------TTEEEEECTT-
T ss_pred             CCCEEEEec----CCCeEEEECCC-CCeEEecC-CCCC----CCCccceECCCCCEEEEccC-------CCeEEEECCC-
Confidence            566777642    22347889988 66654321 1111    22233444346788887542       2378999998 


Q ss_pred             CceeecCCCcc-cccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEE
Q 040145          184 NRWTVMNKMIT-ARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVT  259 (402)
Q Consensus       184 ~~W~~~~~~~~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~  259 (402)
                      ++..... ++. ......++. -++++|+....      ...+.+||+ +++..... .+...........  +|.||+.
T Consensus       134 g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~  204 (300)
T 2qc5_A          134 GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYP-LPTNAAAPVGITSGNDGALWFV  204 (300)
T ss_dssp             SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEE
T ss_pred             CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC------CCeEEEECC-CCcEEEee-CCCCCCCcceEEECCCCCEEEE
Confidence            6655432 111 122233333 25678887542      356899999 66666542 2222222333333  6788886


Q ss_pred             cccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccc
Q 040145          260 EGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQI  337 (402)
Q Consensus       260 gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~  337 (402)
                      ...      ...+.+||+ ++++.....+... .....+.+  +|+||+... ..+.+.+||+ +.+.....   ++...
T Consensus       205 ~~~------~~~i~~~~~-~g~~~~~~~~~~~-~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~~~~---~~~~~  271 (300)
T 2qc5_A          205 EIM------GNKIGRITT-TGEISEYDIPTPN-ARPHAITAGKNSEIWFTEW-GANQIGRITN-DNTIQEYQ---LQTEN  271 (300)
T ss_dssp             ETT------TTEEEEECT-TCCEEEEECSSTT-CCEEEEEECSTTCEEEEET-TTTEEEEECT-TSCEEEEE---CCSTT
T ss_pred             ccC------CCEEEEEcC-CCcEEEEECCCCC-CCceEEEECCCCCEEEecc-CCCeEEEECC-CCcEEEEE---CCccC
Confidence            532      236899998 6666554321111 11122333  678887653 3568999999 45555543   22111


Q ss_pred             cCCeEEEE-eCCEEEEEecCceeeeEEEEeccc
Q 040145          338 CKPFAVNA-CDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       338 ~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      ....+++. .+|+||+.+. .     .+..|||
T Consensus       272 ~~~~~i~~~~~g~l~v~~~-~-----~i~~~~p  298 (300)
T 2qc5_A          272 AEPHGITFGKDGSVWFALK-C-----KIGKLNL  298 (300)
T ss_dssp             CCCCCEEECTTSCEEEECS-S-----EEEEEEE
T ss_pred             CccceeEeCCCCCEEEEcc-C-----ceEEeCC
Confidence            22344444 4678887664 2     3666665

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.77  E-value=0.0043  Score=56.33  Aligned_cols=233  Identities=8%  Similarity=0.040  Sum_probs=112.6

Q ss_pred             CeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccC--CEEEEEeCccCCCCCCCceEEEEECC
Q 040145          105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPRE--GTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~--~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      +.+++.++.+.    .+.+||....++..+..+....    ....++....+  +.+++.|+.+       ..+.+||..
T Consensus        23 ~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~~~d-------g~v~iwd~~   87 (379)
T 3jrp_A           23 GKRLATCSSDK----TIKIFEVEGETHKLIDTLTGHE----GPVWRVDWAHPKFGTILASCSYD-------GKVLIWKEE   87 (379)
T ss_dssp             SSEEEEEETTS----CEEEEEEETTEEEEEEEECCCS----SCEEEEEECCGGGCSEEEEEETT-------SCEEEEEEE
T ss_pred             CCEEEEEECCC----cEEEEecCCCcceeeeEecCCC----CcEEEEEeCCCCCCCEEEEeccC-------CEEEEEEcC
Confidence            44444554332    2677777766655443333111    22233343223  6677777652       268999999


Q ss_pred             CCceeecCCCcccccce-EEEEE-C--CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE------
Q 040145          183 KNRWTVMNKMITARSFF-ASGVI-G--GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL------  252 (402)
Q Consensus       183 t~~W~~~~~~~~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~------  252 (402)
                      +++|..+..+....... ++... +  +.+++.|+.      ...+.+||..+..-.....+.........+.+      
T Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           88 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS------DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET------TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC------CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            99876654443222222 23332 2  556666665      45688888877632111001111111111211      


Q ss_pred             ---------CCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEE--C---CEEEEEeccCCcEEE
Q 040145          253 ---------DGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVV--Y---EHLFVVSELERMKLK  316 (402)
Q Consensus       253 ---------~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~--~---~~l~~~gg~~~~~~~  316 (402)
                               ++.+++.|+.+      ..+..||+.++.  +..+.........-..+.+  +   +.+++.|+. ...+.
T Consensus       162 ~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-dg~i~  234 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-DRTCI  234 (379)
T ss_dssp             --------CTTCEEEEEETT------SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET-TSCEE
T ss_pred             ccccccCCCCCCEEEEEeCC------CeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC-CCEEE
Confidence                     46777777653      268888886553  4433321111111112233  3   677777775 44678


Q ss_pred             EEeCCCCc--eeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEecc
Q 040145          317 VYDPSTDS--WETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLS  368 (402)
Q Consensus       317 ~yd~~~~~--W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~  368 (402)
                      +||..+..  +..... ..........++. ..++++++.|+.+..  ..+|.++
T Consensus       235 iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~dg~--i~iw~~~  286 (379)
T 3jrp_A          235 IWTQDNEQGPWKKTLL-KEEKFPDVLWRASWSLSGNVLALSGGDNK--VTLWKEN  286 (379)
T ss_dssp             EEEESSTTSCCEEEES-SSSCCSSCEEEEEECSSSCCEEEEESSSS--EEEEEEE
T ss_pred             EEeCCCCCccceeeee-ccccCCCcEEEEEEcCCCCEEEEecCCCc--EEEEeCC
Confidence            88877653  211110 1110101112222 357777777776433  3455544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.75  E-value=0.0021  Score=59.00  Aligned_cols=184  Identities=17%  Similarity=0.141  Sum_probs=99.4

Q ss_pred             eEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCC
Q 040145          106 WLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKN  184 (402)
Q Consensus       106 ~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~  184 (402)
                      .+|+.+..    ...+.++|..+++-...-...       ....++++..++ .||+.++.+       ..+.+||..++
T Consensus         3 ~l~vs~~~----d~~v~v~d~~~~~~~~~~~~~-------~~~~~~~~s~dg~~l~~~~~~d-------~~i~v~d~~~~   64 (391)
T 1l0q_A            3 FAYIANSE----SDNISVIDVTSNKVTATIPVG-------SNPMGAVISPDGTKVYVANAHS-------NDVSIIDTATN   64 (391)
T ss_dssp             EEEEEETT----TTEEEEEETTTTEEEEEEECS-------SSEEEEEECTTSSEEEEEEGGG-------TEEEEEETTTT
T ss_pred             EEEEEcCC----CCEEEEEECCCCeEEEEeecC-------CCcceEEECCCCCEEEEECCCC-------CeEEEEECCCC
Confidence            45665532    334888998887654322111       112334443344 577777542       37999999988


Q ss_pred             ceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CC-EEEEEc
Q 040145          185 RWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DG-KLLVTE  260 (402)
Q Consensus       185 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g-~ly~~g  260 (402)
                      +....-..  ......++..  +..||+.+..      ...+.+||..+++-...-..  .......+.. ++ .+|+.+
T Consensus        65 ~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~  134 (391)
T 1l0q_A           65 NVIATVPA--GSSPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTN  134 (391)
T ss_dssp             EEEEEEEC--SSSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEEC--CCCccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEe
Confidence            65432221  1222233333  3457776653      36799999998875433221  1111222222 44 466766


Q ss_pred             ccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC-EEEEEeccCCcEEEEEeCCCCceee
Q 040145          261 GWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE-HLFVVSELERMKLKVYDPSTDSWET  327 (402)
Q Consensus       261 G~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~l~~~gg~~~~~~~~yd~~~~~W~~  327 (402)
                      +..      ..+.+||+.+++....-. ...  ....+.+  ++ .+|+.++. ...+.+||..+.+-..
T Consensus       135 ~~~------~~v~~~d~~~~~~~~~~~-~~~--~~~~~~~~~dg~~l~~~~~~-~~~v~~~d~~~~~~~~  194 (391)
T 1l0q_A          135 NGD------KTVSVINTVTKAVINTVS-VGR--SPKGIAVTPDGTKVYVANFD-SMSISVIDTVTNSVID  194 (391)
T ss_dssp             TTT------TEEEEEETTTTEEEEEEE-CCS--SEEEEEECTTSSEEEEEETT-TTEEEEEETTTTEEEE
T ss_pred             CCC------CEEEEEECCCCcEEEEEe-cCC--CcceEEECCCCCEEEEEeCC-CCEEEEEECCCCeEEE
Confidence            532      378999998876543322 111  1122222  44 45555443 5689999998875443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.68  E-value=0.0081  Score=51.84  Aligned_cols=190  Identities=15%  Similarity=0.153  Sum_probs=98.4

Q ss_pred             EEEEccCCEEEE-EeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEE
Q 040145          150 CVSIPREGTLFV-CGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       150 ~~~~~~~~~i~v-~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      .+++..++.+|+ ....       ...+.+||+.+......+.... ....+++.. ++++|+...       ...+.+|
T Consensus        28 ~i~~~~~g~l~v~~~~~-------~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~-------~~~i~~~   92 (270)
T 1rwi_B           28 GVAVDSAGNVYVTSEGM-------YGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-------NNRVVTL   92 (270)
T ss_dssp             EEEECTTCCEEEEECSS-------SCEEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET-------TTEEEEE
T ss_pred             ceEECCCCCEEEEccCC-------CCcEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC-------CCEEEEE
Confidence            344434678888 4332       3478899988776544332111 122333333 567888764       2468899


Q ss_pred             cCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEE
Q 040145          228 DPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLF  305 (402)
Q Consensus       228 d~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~  305 (402)
                      |+.+.....+....  ........+  +|.+|+....      ...+.+||..+.............-.+.+..-+|++|
T Consensus        93 d~~~~~~~~~~~~~--~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~  164 (270)
T 1rwi_B           93 AAGSNNQTVLPFDG--LNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVY  164 (270)
T ss_dssp             CTTCSCCEECCCCS--CSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEE
T ss_pred             eCCCceEeeeecCC--cCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEE
Confidence            99877655442111  112222333  6788887543      1368888876655443321110111111222367888


Q ss_pred             EEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEeccccc
Q 040145          306 VVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSE  371 (402)
Q Consensus       306 ~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~  371 (402)
                      +.... ...+.+||+.+..-.......+    ....+++. .+|.||+.....+.    +..+++..
T Consensus       165 v~~~~-~~~i~~~~~~~~~~~~~~~~~~----~~p~~i~~d~~g~l~v~~~~~~~----v~~~~~~~  222 (270)
T 1rwi_B          165 VTDTD-NNRVVKLEAESNNQVVLPFTDI----TAPWGIAVDEAGTVYVTEHNTNQ----VVKLLAGS  222 (270)
T ss_dssp             EEEGG-GTEEEEECTTTCCEEECCCSSC----CSEEEEEECTTCCEEEEETTTSC----EEEECTTC
T ss_pred             EEECC-CCEEEEEecCCCceEeecccCC----CCceEEEECCCCCEEEEECCCCc----EEEEcCCC
Confidence            77543 5689999998765443321111    22334554 35689988754433    67776543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.66  E-value=0.016  Score=54.04  Aligned_cols=220  Identities=11%  Similarity=0.042  Sum_probs=118.0

Q ss_pred             eeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc
Q 040145          119 IQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF  198 (402)
Q Consensus       119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  198 (402)
                      ..++++|.....-..+..-.       .......+..+++.+++++.+.    ....++++|..+++.+.+...+.  ..
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~-------~~v~~~~~Spdg~~la~~s~~~----~~~~i~~~d~~tg~~~~l~~~~~--~~  225 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSP-------QPLMSPAWSPDGSKLAYVTFES----GRSALVIQTLANGAVRQVASFPR--HN  225 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEES-------SCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEEEEECCSS--CE
T ss_pred             ceEEEEcCCCCCCEEEeCCC-------CcceeeEEcCCCCEEEEEEecC----CCcEEEEEECCCCcEEEeecCCC--cc
Confidence            57888888765444332211       1233444444665555555421    23589999999988766543321  12


Q ss_pred             eEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEE
Q 040145          199 FASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQV  274 (402)
Q Consensus       199 ~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~  274 (402)
                      ...+.. ++ .|++.+..++    ...++++|..++....+....   .......+  +|+.+++++..+.   ...++.
T Consensus       226 ~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~~---~~~~~~~~spdg~~l~~~s~~~g---~~~i~~  295 (415)
T 2hqs_A          226 GAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGR---SNNTEPTWFPDSQNLAFTSDQAG---RPQVYK  295 (415)
T ss_dssp             EEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCCS---SCEEEEEECTTSSEEEEEECTTS---SCEEEE
T ss_pred             cCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCCC---CcccceEECCCCCEEEEEECCCC---CcEEEE
Confidence            233332 34 4555554332    456999999998876654322   11222222  6664444432111   236889


Q ss_pred             EeCCCCCeeeccccccCCCceeEEE--ECCEEEEEeccC--CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEE
Q 040145          275 YDPSTDNWESMAVGLREGWTGSSVV--VYEHLFVVSELE--RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRV  350 (402)
Q Consensus       275 yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~--~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i  350 (402)
                      +|+.+++-..+..   .......+.  -+|+.+++++..  ...++++|..+.+...+..  ..   .........+++.
T Consensus       296 ~d~~~~~~~~l~~---~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~--~~---~~~~~~~spdg~~  367 (415)
T 2hqs_A          296 VNINGGAPQRITW---EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS--TF---LDETPSLAPNGTM  367 (415)
T ss_dssp             EETTSSCCEECCC---SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC--SS---SCEEEEECTTSSE
T ss_pred             EECCCCCEEEEec---CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC--CC---CcCCeEEcCCCCE
Confidence            9998877554432   111111222  366655555543  3589999999988766542  11   1222233456776


Q ss_pred             EEEecCceeeeEEEEecccc
Q 040145          351 YVVGRNLHVAVGHITRLSTS  370 (402)
Q Consensus       351 ~v~GG~~~~~~~~v~~~~~~  370 (402)
                      +++++.... ...++.+|..
T Consensus       368 l~~~s~~~~-~~~l~~~d~~  386 (415)
T 2hqs_A          368 VIYSSSQGM-GSVLNLVSTD  386 (415)
T ss_dssp             EEEEEEETT-EEEEEEEETT
T ss_pred             EEEEEcCCC-ccEEEEEECC
Confidence            666654322 3467777653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.60  E-value=0.0066  Score=52.19  Aligned_cols=163  Identities=13%  Similarity=0.047  Sum_probs=101.0

Q ss_pred             eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCC
Q 040145          199 FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPS  278 (402)
Q Consensus       199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~  278 (402)
                      .+....++.+|+..|..+    .+.+.++|++|++-..--+++...++.+.+..+++||+....      .+.+++||++
T Consensus        46 qGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~------~~~v~v~D~~  115 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK------NGLGFVWNIR  115 (262)
T ss_dssp             EEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEETT
T ss_pred             ceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee------CCEEEEEECc
Confidence            455666899999988643    457999999999865444555555566677789999998653      3579999998


Q ss_pred             CCCee-eccccccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCCcee-ecCCCCCCccccCCeEEEEeCCEEEEEec
Q 040145          279 TDNWE-SMAVGLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTDSWE-TIEGPPLPEQICKPFAVNACDCRVYVVGR  355 (402)
Q Consensus       279 ~~~W~-~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~-~~~~~~~p~~~~~~~~~~~~~~~i~v~GG  355 (402)
                      +.+-. +++. .+   .+..+.. ++++|+.-|  .+.++.+|+++.+-. .+....-+......-.+...+|+||+---
T Consensus       116 t~~~~~ti~~-~~---eG~glt~dg~~L~~SdG--s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w  189 (262)
T 3nol_A          116 NLRQVRSFNY-DG---EGWGLTHNDQYLIMSDG--TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVW  189 (262)
T ss_dssp             TCCEEEEEEC-SS---CCCCEEECSSCEEECCS--SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred             cCcEEEEEEC-CC---CceEEecCCCEEEEECC--CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEc
Confidence            87643 3332 12   3333334 556777655  568999999986533 23210011111111124445899886332


Q ss_pred             CceeeeEEEEecccccccCceeeeEEEEe
Q 040145          356 NLHVAVGHITRLSTSEKKWSFSVQWQVVD  384 (402)
Q Consensus       356 ~~~~~~~~v~~~~~~~~~~~~~~~W~~~~  384 (402)
                      .    .++|.+.||...   +-..|..+.
T Consensus       190 ~----~~~I~vIDp~tG---~V~~~Id~~  211 (262)
T 3nol_A          190 Q----TNKIVRIDPETG---KVTGIIDLN  211 (262)
T ss_dssp             T----SSEEEEECTTTC---BEEEEEECT
T ss_pred             c----CCeEEEEECCCC---cEEEEEECC
Confidence            1    346889998665   445666654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.60  E-value=0.01  Score=53.03  Aligned_cols=183  Identities=11%  Similarity=0.081  Sum_probs=93.5

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee-cCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEV  226 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~  226 (402)
                      .++.+..++.+++.|+.+       ..+.+||..+++-.. +..-+.  ....++. -+++.++.|+.      ...+.+
T Consensus        84 ~~~~~~~~~~~l~s~s~D-------~~i~lWd~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~g~~------dg~v~i  148 (321)
T 3ow8_A           84 VSVDISHTLPIAASSSLD-------AHIRLWDLENGKQIKSIDAGPV--DAWTLAFSPDSQYLATGTH------VGKVNI  148 (321)
T ss_dssp             EEEEECSSSSEEEEEETT-------SEEEEEETTTTEEEEEEECCTT--CCCCEEECTTSSEEEEECT------TSEEEE
T ss_pred             EEEEECCCCCEEEEEeCC-------CcEEEEECCCCCEEEEEeCCCc--cEEEEEECCCCCEEEEEcC------CCcEEE
Confidence            344444456677777752       278899998875322 211111  1112222 25566677765      456888


Q ss_pred             EcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEE
Q 040145          227 LDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHL  304 (402)
Q Consensus       227 yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l  304 (402)
                      ||..+..-...  +.........+.+  ++++++.|+.+      ..+..||+.+++-...-......-......-++.+
T Consensus       149 ~~~~~~~~~~~--~~~~~~~v~~~~~spdg~~lasg~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~  220 (321)
T 3ow8_A          149 FGVESGKKEYS--LDTRGKFILSIAYSPDGKYLASGAID------GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL  220 (321)
T ss_dssp             EETTTCSEEEE--EECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCE
T ss_pred             EEcCCCceeEE--ecCCCceEEEEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCE
Confidence            88887653221  1111111222222  67777777753      36889999876532211101111111112226777


Q ss_pred             EEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCcee
Q 040145          305 FVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHV  359 (402)
Q Consensus       305 ~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~  359 (402)
                      ++.|+. ...+.+||..+......    +......-.+++ ..+++.++.|+.+..
T Consensus       221 l~s~s~-dg~i~iwd~~~~~~~~~----~~~h~~~v~~~~~sp~~~~l~s~s~D~~  271 (321)
T 3ow8_A          221 LVTASD-DGYIKIYDVQHANLAGT----LSGHASWVLNVAFCPDDTHFVSSSSDKS  271 (321)
T ss_dssp             EEEECT-TSCEEEEETTTCCEEEE----ECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEcC-CCeEEEEECCCcceeEE----EcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence            777765 45799999987654322    111101112232 246777788876544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.58  E-value=0.043  Score=51.44  Aligned_cols=183  Identities=10%  Similarity=0.065  Sum_probs=97.2

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNW  234 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  234 (402)
                      ++.+++.|+.+       ..+.+||..+++-...-.. ....-.+++.. ++..++.|+.      ...+.+||..+++-
T Consensus       279 ~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~  344 (464)
T 3v7d_B          279 HGNIVVSGSYD-------NTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASM------DTTIRIWDLENGEL  344 (464)
T ss_dssp             ETTEEEEEETT-------SCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEET------TSCEEEEETTTTEE
T ss_pred             CCCEEEEEeCC-------CeEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCcE
Confidence            55666666652       2689999987653221111 11112223332 4556666665      34688999987653


Q ss_pred             EEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcE
Q 040145          235 RTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMK  314 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~  314 (402)
                      ..  .+............++..++.|+.+      ..+.+||+.+..-..... ............++.+++.|+  ...
T Consensus       345 ~~--~~~~h~~~v~~~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--dg~  413 (464)
T 3v7d_B          345 MY--TLQGHTALVGLLRLSDKFLVSAAAD------GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS--ENQ  413 (464)
T ss_dssp             EE--EECCCSSCEEEEEECSSEEEEEETT------SEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE--TTE
T ss_pred             EE--EEeCCCCcEEEEEEcCCEEEEEeCC------CcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec--CCe
Confidence            22  2222223334455567777777653      368899998754221111 111122223456778777776  358


Q ss_pred             EEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEe
Q 040145          315 LKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITR  366 (402)
Q Consensus       315 ~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~  366 (402)
                      +.+||..+.+-....  ..+.. ..-.++...++.+++.++.+......+++
T Consensus       414 i~iwd~~~g~~~~~~--~~~~~-~~v~~v~~~~~~l~~~~~~~g~~~i~~ld  462 (464)
T 3v7d_B          414 FNIYNLRSGKLVHAN--ILKDA-DQIWSVNFKGKTLVAAVEKDGQSFLEILD  462 (464)
T ss_dssp             EEEEETTTCCEEESC--TTTTC-SEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEECCCCcEEehh--hccCC-CcEEEEEecCCEEEEEEEeCCeEEEEEee
Confidence            999999887654421  12211 22224444566666666655444444443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.57  E-value=0.019  Score=50.24  Aligned_cols=241  Identities=10%  Similarity=0.027  Sum_probs=123.4

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEEC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM  181 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~  181 (402)
                      .+.+++.+    .....+.++|+.+.+  |+.-..-.  .    ..+..... .++.|++.+.         +.++.||+
T Consensus         4 ~~~~lv~~----~~~~~v~~~d~~tG~~~w~~~~~~~--~----~~~~~~~~-pdG~ilvs~~---------~~V~~~d~   63 (276)
T 3no2_A            4 PQHLLVGG----SGWNKIAIINKDTKEIVWEYPLEKG--W----ECNSVAAT-KAGEILFSYS---------KGAKMITR   63 (276)
T ss_dssp             CCEEEEEC----TTCSEEEEEETTTTEEEEEEECCTT--C----CCCEEEEC-TTSCEEEECB---------SEEEEECT
T ss_pred             CCcEEEee----CCCCEEEEEECCCCeEEEEeCCCcc--C----CCcCeEEC-CCCCEEEeCC---------CCEEEECC
Confidence            34566665    334458899997776  65432110  0    22333443 4778888431         26999999


Q ss_pred             CCCc--eeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEc--CCCCCC--CcceeEEEEC
Q 040145          182 QKNR--WTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTI--ASMGTN--MASYDAAVLD  253 (402)
Q Consensus       182 ~t~~--W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~--~~~~~~--~~~~~~~~~~  253 (402)
                       +++  |+.-.+  .....+++... ++++++....+     ...++.+|+.-+. |+..  ...+..  .........+
T Consensus        64 -~G~~~W~~~~~--~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~  135 (276)
T 3no2_A           64 -DGRELWNIAAP--AGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKK  135 (276)
T ss_dssp             -TSCEEEEEECC--TTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTT
T ss_pred             -CCCEEEEEcCC--CCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCC
Confidence             664  665432  11122333333 56666654321     2457888885432 4432  111111  1111233346


Q ss_pred             CEEEEEcccccCCccCCcEEEEeCCCC-CeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCC--ceeecCC
Q 040145          254 GKLLVTEGWLWPFFVSPRGQVYDPSTD-NWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD--SWETIEG  330 (402)
Q Consensus       254 g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~--~W~~~~~  330 (402)
                      |.+++....      ...+.+||++-+ .|+.-..   ..-+......+|.+++++.. ...+..+|+++.  .|+.-..
T Consensus       136 G~~lv~~~~------~~~v~~~d~~G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~-~~~v~~~d~~tG~~~w~~~~~  205 (276)
T 3no2_A          136 GNYLVPLFA------TSEVREIAPNGQLLNSVKLS---GTPFSSAFLDNGDCLVACGD-AHCFVQLNLESNRIVRRVNAN  205 (276)
T ss_dssp             SCEEEEETT------TTEEEEECTTSCEEEEEECS---SCCCEEEECTTSCEEEECBT-TSEEEEECTTTCCEEEEEEGG
T ss_pred             CCEEEEecC------CCEEEEECCCCCEEEEEECC---CCccceeEcCCCCEEEEeCC-CCeEEEEeCcCCcEEEEecCC
Confidence            777665442      247899999722 3664332   11122223447888877554 557999999965  3665321


Q ss_pred             CCCCc-cccCCeE-EEEeCCEEEEEe--cCce----eeeEEEEecccccccCceeeeEEEEeCCCCC
Q 040145          331 PPLPE-QICKPFA-VNACDCRVYVVG--RNLH----VAVGHITRLSTSEKKWSFSVQWQVVDAPDNF  389 (402)
Q Consensus       331 ~~~p~-~~~~~~~-~~~~~~~i~v~G--G~~~----~~~~~v~~~~~~~~~~~~~~~W~~~~~~~~~  389 (402)
                       .++. ......+ ....+|.+||..  |...    .....++.+++.     .+..|+- .....+
T Consensus       206 -~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~-----g~~~W~~-~~~~~~  265 (276)
T 3no2_A          206 -DIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSE-----GKVVWQL-NDKVKF  265 (276)
T ss_dssp             -GSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTT-----SBEEEEE-CCTTTS
T ss_pred             -CCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCC-----CCEEEEe-cCcccc
Confidence             1111 1111223 335688999987  4321    023356666652     3447873 444444

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.52  E-value=0.019  Score=50.87  Aligned_cols=183  Identities=10%  Similarity=0.045  Sum_probs=95.1

Q ss_pred             ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce-EEEEE-CCEEEEEcCCCCCCCCCCeeE
Q 040145          148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF-ASGVI-GGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ..++....++..++.|+.+       ..+.+||..+++......+....... .+... +++.++.|+.      ...+.
T Consensus       100 v~~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~v~  166 (337)
T 1gxr_A          100 IRSCKLLPDGCTLIVGGEA-------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS------DGNIA  166 (337)
T ss_dssp             EEEEEECTTSSEEEEEESS-------SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET------TSCEE
T ss_pred             EEEEEEcCCCCEEEEEcCC-------CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC------CCcEE
Confidence            3444554466667776642       37999999988754433332222222 22222 4566666665      34688


Q ss_pred             EEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCE
Q 040145          226 VLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEH  303 (402)
Q Consensus       226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  303 (402)
                      +||..+++....  +...........+  ++..++.++.+      ..+..||+.+.+-...-. ...........-++.
T Consensus       167 ~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~  237 (337)
T 1gxr_A          167 VWDLHNQTLVRQ--FQGHTDGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGE  237 (337)
T ss_dssp             EEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSS
T ss_pred             EEeCCCCceeee--eecccCceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeec-CCCceEEEEECCCCC
Confidence            999988764332  1111122223333  66666766643      368999998764322211 111111111223677


Q ss_pred             EEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCce
Q 040145          304 LFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLH  358 (402)
Q Consensus       304 l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~  358 (402)
                      ++++|+. ...+.+||..+..-..+..  ..   ....++. ..++++++.|+.++
T Consensus       238 ~l~~~~~-~~~i~~~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~dg  287 (337)
T 1gxr_A          238 WLAVGME-SSNVEVLHVNKPDKYQLHL--HE---SCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             EEEEEET-TSCEEEEETTSSCEEEECC--CS---SCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEcC-CCcEEEEECCCCCeEEEcC--Cc---cceeEEEECCCCCEEEEecCCC
Confidence            7777665 4579999998765433321  11   1112333 34677777777544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.50  E-value=0.0086  Score=55.68  Aligned_cols=212  Identities=9%  Similarity=-0.049  Sum_probs=109.8

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc---ccc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI---TAR  196 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~---~~r  196 (402)
                      .++.+|+.+.++..+..++...    ...+ +++..++.+++.++.+       ..+.+||+.+++.....+..   ...
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~----~~~~-~~~s~~~~~~~~~~~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~  169 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGF----QPKS-VRFIDNTRLAIPLLED-------EGMDVLDINSGQTVRLSPPEKYKKKL  169 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSS----CBCC-CEESSSSEEEEEBTTS-------SSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred             EEEEECCCCCcceEEEEEcCCC----CceE-EEEeCCCeEEEEeCCC-------CeEEEEECCCCeEeeecCcccccccC
Confidence            5778888776655544333221    1122 2332377888887642       36999999998766543322   111


Q ss_pred             cceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcce-eEEEE-CC-EEEEEcccccCCccCCc
Q 040145          197 SFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASY-DAAVL-DG-KLLVTEGWLWPFFVSPR  271 (402)
Q Consensus       197 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~-~~~~~-~g-~ly~~gG~~~~~~~~~~  271 (402)
                      ........  ++.+|+.++.      ...+.+||..+.+-...-.  ...... ..+.. ++ .+|+.++.+      ..
T Consensus       170 ~~v~~~~~~~~~~~~~s~~~------d~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~------~~  235 (433)
T 3bws_A          170 GFVETISIPEHNELWVSQMQ------ANAVHVFDLKTLAYKATVD--LTGKWSKILLYDPIRDLVYCSNWIS------ED  235 (433)
T ss_dssp             CEEEEEEEGGGTEEEEEEGG------GTEEEEEETTTCCEEEEEE--CSSSSEEEEEEETTTTEEEEEETTT------TE
T ss_pred             CceeEEEEcCCCEEEEEECC------CCEEEEEECCCceEEEEEc--CCCCCeeEEEEcCCCCEEEEEecCC------Cc
Confidence            11222222  6788888874      4578999998865432211  111112 22222 34 566665432      37


Q ss_pred             EEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEecc-------CCcEEEEEeCCCCceeecCCCCCCccccCCeE
Q 040145          272 GQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSEL-------ERMKLKVYDPSTDSWETIEGPPLPEQICKPFA  342 (402)
Q Consensus       272 ~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~-------~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~  342 (402)
                      +.+||+.+++....-.   .......+.+  +++.+++++.       ....+.+||+.+.+-....  ..+   .....
T Consensus       236 i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~~~---~~~~~  307 (433)
T 3bws_A          236 ISVIDRKTKLEIRKTD---KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--GPP---GNKRH  307 (433)
T ss_dssp             EEEEETTTTEEEEECC---CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--EEE---ECEEE
T ss_pred             EEEEECCCCcEEEEec---CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--cCC---CCcce
Confidence            8999998775433221   1111122333  5544445443       2347999999877543322  111   11122


Q ss_pred             EE-EeCC-EEEEEecCceeeeEEEEeccc
Q 040145          343 VN-ACDC-RVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       343 ~~-~~~~-~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      ++ ..++ .+|+.++.++.    +..+|.
T Consensus       308 ~~~~~~g~~l~~~~~~~~~----v~v~d~  332 (433)
T 3bws_A          308 IVSGNTENKIYVSDMCCSK----IEVYDL  332 (433)
T ss_dssp             EEECSSTTEEEEEETTTTE----EEEEET
T ss_pred             EEECCCCCEEEEEecCCCE----EEEEEC
Confidence            22 2344 68787765443    555554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.47  E-value=0.021  Score=53.50  Aligned_cols=189  Identities=14%  Similarity=0.076  Sum_probs=96.8

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR  235 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  235 (402)
                      ++..++.|+.+       ..+.+||..+++-..  .+............++..++.|+.      ...+.+||..++.-.
T Consensus       248 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~  312 (445)
T 2ovr_B          248 DGRRVVSGAYD-------FMVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSL------DTSIRVWDVETGNCI  312 (445)
T ss_dssp             CSSCEEEEETT-------SCEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEET------TSCEEEEETTTCCEE
T ss_pred             CCCEEEEEcCC-------CEEEEEECCCCcEeE--EecCCCCceEEEEECCCEEEEEeC------CCeEEEEECCCCCEE
Confidence            66666666652       268889987764222  111111122233336666777765      356889999876532


Q ss_pred             EcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeee-ccccccCCCceeEEEECCEEEEEeccCCcE
Q 040145          236 TIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVGLREGWTGSSVVVYEHLFVVSELERMK  314 (402)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~  314 (402)
                      ..  +............++.+++.|+.+      ..+..||+.+++-.. +.........-.++..++.+++.|+. ...
T Consensus       313 ~~--~~~~~~~v~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~-dg~  383 (445)
T 2ovr_B          313 HT--LTGHQSLTSGMELKDNILVSGNAD------STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD-DGT  383 (445)
T ss_dssp             EE--ECCCCSCEEEEEEETTEEEEEETT------SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEET-TSE
T ss_pred             EE--EcCCcccEEEEEEeCCEEEEEeCC------CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeC-CCe
Confidence            21  111222223344456666666643      368999997765322 22111111111234567777777775 568


Q ss_pred             EEEEeCCCCceeecC-CCCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEecc
Q 040145          315 LKVYDPSTDSWETIE-GPPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLS  368 (402)
Q Consensus       315 ~~~yd~~~~~W~~~~-~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~  368 (402)
                      +.+||..+.+....- ............++.. .++.++++|+.+......+.++|
T Consensus       384 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~d  439 (445)
T 2ovr_B          384 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD  439 (445)
T ss_dssp             EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEE
Confidence            999999887644321 0000110011123333 45667777776654333344443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.45  E-value=0.011  Score=52.50  Aligned_cols=205  Identities=9%  Similarity=0.037  Sum_probs=104.5

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF  199 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  199 (402)
                      .+.+||..+.+......+....    .......+..++..++.|+.+       ..+.+||..+++....-... .....
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d-------g~v~~~d~~~~~~~~~~~~~-~~~i~  187 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTSSA----PACYALAISPDSKVCFSCCSD-------GNIAVWDLHNQTLVRQFQGH-TDGAS  187 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSS----SCEEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCC-SSCEE
T ss_pred             cEEEEECCCCCcceeeecccCC----CceEEEEECCCCCEEEEEeCC-------CcEEEEeCCCCceeeeeecc-cCceE
Confidence            4778888877643332222111    223344444466667777652       26899999887543321111 11112


Q ss_pred             EEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeC
Q 040145          200 ASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDP  277 (402)
Q Consensus       200 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~  277 (402)
                      .+... ++..++.++.      ...+.+||..+..-...-..+.  ....... -++.++++|+.+      ..+..||.
T Consensus       188 ~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~------~~i~~~~~  253 (337)
T 1gxr_A          188 CIDISNDGTKLWTGGL------DNTVRSWDLREGRQLQQHDFTS--QIFSLGYCPTGEWLAVGMES------SNVEVLHV  253 (337)
T ss_dssp             EEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEECSS--CEEEEEECTTSSEEEEEETT------SCEEEEET
T ss_pred             EEEECCCCCEEEEEec------CCcEEEEECCCCceEeeecCCC--ceEEEEECCCCCEEEEEcCC------CcEEEEEC
Confidence            22222 4556666664      4568999998875432211111  1122222 266777776643      36889999


Q ss_pred             CCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEe
Q 040145          278 STDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVG  354 (402)
Q Consensus       278 ~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~G  354 (402)
                      .+..-..+.. ... .. ..+.+  ++++++.++. ...+.+||..+.+-....  ...   ....++. ..+++.++.|
T Consensus       254 ~~~~~~~~~~-~~~-~v-~~~~~~~~~~~l~~~~~-dg~i~~~~~~~~~~~~~~--~~~---~~v~~~~~s~~~~~l~~~  324 (337)
T 1gxr_A          254 NKPDKYQLHL-HES-CV-LSLKFAYCGKWFVSTGK-DNLLNAWRTPYGASIFQS--KES---SSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             TSSCEEEECC-CSS-CE-EEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEE--ECS---SCEEEEEECTTSCEEEEE
T ss_pred             CCCCeEEEcC-Ccc-ce-eEEEECCCCCEEEEecC-CCcEEEEECCCCeEEEEe--cCC---CcEEEEEECCCCCEEEEe
Confidence            8765332221 111 11 12222  5677777665 568999999876544221  111   1112333 3467777777


Q ss_pred             cCcee
Q 040145          355 RNLHV  359 (402)
Q Consensus       355 G~~~~  359 (402)
                      +.+..
T Consensus       325 ~~dg~  329 (337)
T 1gxr_A          325 SGDKK  329 (337)
T ss_dssp             ETTSC
T ss_pred             cCCCe
Confidence            75543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=97.45  E-value=0.046  Score=47.20  Aligned_cols=227  Identities=10%  Similarity=0.007  Sum_probs=115.2

Q ss_pred             CCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC-CceeecCCCcc
Q 040145          116 TGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK-NRWTVMNKMIT  194 (402)
Q Consensus       116 ~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t-~~W~~~~~~~~  194 (402)
                      .....++++|+.+++...+....       .......+..++..+++++.        ..+++||..+ ++...+.....
T Consensus        19 ~~~~~i~~~d~~~~~~~~~~~~~-------~~v~~~~~spdg~~l~~~~~--------~~i~~~d~~~~~~~~~~~~~~~   83 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRVVWQTP-------ELFEAPNWSPDGKYLLLNSE--------GLLYRLSLAGDPSPEKVDTGFA   83 (297)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEES-------SCCEEEEECTTSSEEEEEET--------TEEEEEESSSCCSCEECCCTTC
T ss_pred             CcceeEEEEeCCCCceeeeccCC-------cceEeeEECCCCCEEEEEcC--------CeEEEEeCCCCCCceEeccccc
Confidence            34556888999888766543322       22344455456666666542        2799999998 77666543332


Q ss_pred             cccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCE-EEEEcccccCCccCCc
Q 040145          195 ARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGK-LLVTEGWLWPFFVSPR  271 (402)
Q Consensus       195 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~-ly~~gG~~~~~~~~~~  271 (402)
                      ......+.. -+++.+++++.....  ...++.+|..++.-..+.....   ....... +++ |++.++..+    ...
T Consensus        84 ~~~~~~~~~spdg~~l~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~----~~~  154 (297)
T 2ojh_A           84 TICNNDHGISPDGALYAISDKVEFG--KSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQ----VFD  154 (297)
T ss_dssp             CCBCSCCEECTTSSEEEEEECTTTS--SCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETT----EEE
T ss_pred             cccccceEECCCCCEEEEEEeCCCC--cceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCCC----ceE
Confidence            122122222 245544444432211  5678889888776555533221   1122222 554 444444321    125


Q ss_pred             EEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEec--cCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCC
Q 040145          272 GQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSE--LERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDC  348 (402)
Q Consensus       272 ~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg--~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~  348 (402)
                      ++.+|..++....+... ..........-+++.+++++  .....++.++........+..  ..   .....+. ..++
T Consensus       155 l~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~---~~~~~~~~s~dg  228 (297)
T 2ojh_A          155 IYSMDIDSGVETRLTHG-EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--SA---YGDWFPHPSPSG  228 (297)
T ss_dssp             EEEEETTTCCEEECCCS-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--CS---EEEEEEEECTTS
T ss_pred             EEEEECCCCcceEcccC-CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--CC---cccCCeEECCCC
Confidence            67777777766555431 11111111222555444433  235678888877776666542  11   1111222 3466


Q ss_pred             EEEEEecCcee-------eeEEEEecccccc
Q 040145          349 RVYVVGRNLHV-------AVGHITRLSTSEK  372 (402)
Q Consensus       349 ~i~v~GG~~~~-------~~~~v~~~~~~~~  372 (402)
                      +.+++++....       ....++.+|....
T Consensus       229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             SEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             CEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence            65555543311       3356777776443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.44  E-value=0.0081  Score=55.87  Aligned_cols=197  Identities=14%  Similarity=0.037  Sum_probs=102.7

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+++.+...    ..+.+||+.+.+........... ........+++..++.+++.++.+       ..+.+||..+
T Consensus       133 ~~~~~~~~~~~----~~i~~~d~~~g~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~s~~~d-------~~v~~~d~~~  200 (433)
T 3bws_A          133 NTRLAIPLLED----EGMDVLDINSGQTVRLSPPEKYK-KKLGFVETISIPEHNELWVSQMQA-------NAVHVFDLKT  200 (433)
T ss_dssp             SSEEEEEBTTS----SSEEEEETTTCCEEEECCCHHHH-TTCCEEEEEEEGGGTEEEEEEGGG-------TEEEEEETTT
T ss_pred             CCeEEEEeCCC----CeEEEEECCCCeEeeecCccccc-ccCCceeEEEEcCCCEEEEEECCC-------CEEEEEECCC
Confidence            56666665332    24888999888765533221100 000122334445578888888752       3799999988


Q ss_pred             Cceee-cCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEE
Q 040145          184 NRWTV-MNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLV  258 (402)
Q Consensus       184 ~~W~~-~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~  258 (402)
                      ++... +..  .......++..  +..+|+.++.      ...+.+||+.+++....-  +.... ...+.+  +|+.++
T Consensus       201 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~------~~~i~~~d~~~~~~~~~~--~~~~~-~~~~~~~~~g~~l~  269 (433)
T 3bws_A          201 LAYKATVDL--TGKWSKILLYDPIRDLVYCSNWI------SEDISVIDRKTKLEIRKT--DKIGL-PRGLLLSKDGKELY  269 (433)
T ss_dssp             CCEEEEEEC--SSSSEEEEEEETTTTEEEEEETT------TTEEEEEETTTTEEEEEC--CCCSE-EEEEEECTTSSEEE
T ss_pred             ceEEEEEcC--CCCCeeEEEEcCCCCEEEEEecC------CCcEEEEECCCCcEEEEe--cCCCC-ceEEEEcCCCCEEE
Confidence            65332 221  11112233333  3467777754      357899999887654332  22211 222333  565444


Q ss_pred             EcccccCCc--cCCcEEEEeCCCCCeeeccccccCCCceeEEEECC-EEEEEeccCCcEEEEEeCCCCce
Q 040145          259 TEGWLWPFF--VSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVVSELERMKLKVYDPSTDSW  325 (402)
Q Consensus       259 ~gG~~~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~~~~~~~~yd~~~~~W  325 (402)
                      +++......  ....+.+||+.+++-..... .+.........-++ .+|+.++. ...+.+||..+.+-
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~-~~~v~v~d~~~~~~  337 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMC-CSKIEVYDLKEKKV  337 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETT-TTEEEEEETTTTEE
T ss_pred             EEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecC-CCEEEEEECCCCcE
Confidence            444322111  12368899998775433221 11111111112244 57766554 56899999987643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.41  E-value=0.051  Score=47.24  Aligned_cols=192  Identities=13%  Similarity=0.140  Sum_probs=102.6

Q ss_pred             EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc---c-cccceEEEEE--CCEEEEEcCCCCCCCCCCee
Q 040145          151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI---T-ARSFFASGVI--GGMIYVAGGSSADLFELDSA  224 (402)
Q Consensus       151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~---~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~  224 (402)
                      +++..++.+|+.+..       ...+.+||+.......++...   . ......+++.  ++.+|+.+...     ...+
T Consensus        35 v~~~~~g~l~v~~~~-------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i  102 (286)
T 1q7f_A           35 VAVNAQNDIIVADTN-------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQI  102 (286)
T ss_dssp             EEECTTCCEEEEEGG-------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCEE
T ss_pred             EEECCCCCEEEEECC-------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCEE
Confidence            344346788887643       237999998855443333211   1 1122344442  67899886320     3568


Q ss_pred             EEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--
Q 040145          225 EVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--  300 (402)
Q Consensus       225 ~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--  300 (402)
                      .+||.....-..+....  ......+.+  +|++|+....      ...+.+||+.......+... ........+.+  
T Consensus       103 ~~~d~~g~~~~~~~~~~--~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~-~~~~~p~~i~~~~  173 (286)
T 1q7f_A          103 QIYNQYGQFVRKFGATI--LQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCS-KHLEFPNGVVVND  173 (286)
T ss_dssp             EEECTTSCEEEEECTTT--CSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECT-TTCSSEEEEEECS
T ss_pred             EEECCCCcEEEEecCcc--CCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCC-CccCCcEEEEECC
Confidence            89996544433332211  111222333  6788887543      24789999765544333221 11111112333  


Q ss_pred             CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEecccc
Q 040145          301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTS  370 (402)
Q Consensus       301 ~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~  370 (402)
                      +|++|+.... ...+.+||+.......+..   ........+++. .+|+|||.....+   ..|..||+.
T Consensus       174 ~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~---~g~~~~p~~i~~d~~G~l~v~~~~~~---~~i~~~~~~  237 (286)
T 1q7f_A          174 KQEIFISDNR-AHCVKVFNYEGQYLRQIGG---EGITNYPIGVGINSNGEILIADNHNN---FNLTIFTQD  237 (286)
T ss_dssp             SSEEEEEEGG-GTEEEEEETTCCEEEEESC---TTTSCSEEEEEECTTCCEEEEECSSS---CEEEEECTT
T ss_pred             CCCEEEEECC-CCEEEEEcCCCCEEEEEcc---CCccCCCcEEEECCCCCEEEEeCCCC---EEEEEECCC
Confidence            5888886543 5689999997665445432   111122334444 4678999876543   136777753

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.39  E-value=0.017  Score=49.66  Aligned_cols=161  Identities=9%  Similarity=-0.029  Sum_probs=98.9

Q ss_pred             eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCC
Q 040145          199 FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPS  278 (402)
Q Consensus       199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~  278 (402)
                      .+....++.+|+..|.      ...+.++|++|++-..-- ++...++.+.+..+++||+....      .+.+++||++
T Consensus        58 qGL~~~~~~Ly~stG~------~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V~D~~  124 (268)
T 3nok_A           58 QGLVFHQGHFFESTGH------QGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT------EGLLFTWSGM  124 (268)
T ss_dssp             EEEEEETTEEEEEETT------TTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS------SCEEEEEETT
T ss_pred             ceEEEECCEEEEEcCC------CCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc------CCEEEEEECC
Confidence            4666678999999986      334899999998743222 55444556677778999998653      3579999998


Q ss_pred             CCCee-eccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCcee-ecCCCCCCccccCCeEEEEeCCEEEEEecC
Q 040145          279 TDNWE-SMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWE-TIEGPPLPEQICKPFAVNACDCRVYVVGRN  356 (402)
Q Consensus       279 ~~~W~-~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~-~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~  356 (402)
                      +.+-. +++. .+.++  ..+.-+++||+.-|  .+.++.+|+++.+-. .+....-+........+...+|+||+--- 
T Consensus       125 Tl~~~~ti~~-~~eGw--GLt~Dg~~L~vSdG--s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw-  198 (268)
T 3nok_A          125 PPQRERTTRY-SGEGW--GLCYWNGKLVRSDG--GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIW-  198 (268)
T ss_dssp             TTEEEEEEEC-SSCCC--CEEEETTEEEEECS--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET-
T ss_pred             cCcEEEEEeC-CCcee--EEecCCCEEEEECC--CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEEC-
Confidence            86543 3332 22221  12345677888765  569999999987533 22210111111111234455889885321 


Q ss_pred             ceeeeEEEEecccccccCceeeeEEEEe
Q 040145          357 LHVAVGHITRLSTSEKKWSFSVQWQVVD  384 (402)
Q Consensus       357 ~~~~~~~v~~~~~~~~~~~~~~~W~~~~  384 (402)
                         ..++|.+.||...   +-..|..+.
T Consensus       199 ---~s~~I~vIDp~TG---~V~~~Idl~  220 (268)
T 3nok_A          199 ---HSSDVLEIDPATG---TVVGVIDAS  220 (268)
T ss_dssp             ---TCSEEEEECTTTC---BEEEEEECH
T ss_pred             ---CCCeEEEEeCCCC---cEEEEEECC
Confidence               1346888898665   445666654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.37  E-value=0.019  Score=51.85  Aligned_cols=193  Identities=8%  Similarity=0.064  Sum_probs=97.1

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+++.++.    ...+.+||..+.++..+..+....    ....++.+..++.+++.|+.+       ..+.+||..+
T Consensus        19 ~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~   83 (372)
T 1k8k_C           19 DRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHN----GQVTGVDWAPDSNRIVTCGTD-------RNAYVWTLKG   83 (372)
T ss_dssp             TSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCS----SCEEEEEEETTTTEEEEEETT-------SCEEEEEEET
T ss_pred             CCCEEEEEeC----CCEEEEEeCCCCcEEeeeeecCCC----CcccEEEEeCCCCEEEEEcCC-------CeEEEEECCC
Confidence            3445555533    234788898888765544333111    223344444466777777652       2688999988


Q ss_pred             CceeecCCCcc-cccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcCCCCCC-CcceeEEEE--CCEEE
Q 040145          184 NRWTVMNKMIT-ARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIASMGTN-MASYDAAVL--DGKLL  257 (402)
Q Consensus       184 ~~W~~~~~~~~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~-~~~~~~~~~--~g~ly  257 (402)
                      +++.....+.. ......+... +++.++.|+.      ...+.+||..+.. |........+ ........+  ++.++
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  157 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSG------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL  157 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEET------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeC------CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence            87655432221 1222223332 4566666664      3456777776554 3322222111 112222222  66777


Q ss_pred             EEcccccCCccCCcEEEEeCCCCC---------ee-------eccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEe
Q 040145          258 VTEGWLWPFFVSPRGQVYDPSTDN---------WE-------SMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYD  319 (402)
Q Consensus       258 ~~gG~~~~~~~~~~~~~yd~~~~~---------W~-------~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd  319 (402)
                      +.|+.+      ..+..||.....         |.       .+.........-..+.+  ++..++.|+. ...+.+||
T Consensus       158 ~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d  230 (372)
T 1k8k_C          158 AAGSCD------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-DSTVCLAD  230 (372)
T ss_dssp             EEEETT------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-TTEEEEEE
T ss_pred             EEEcCC------CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC-CCEEEEEE
Confidence            777643      368888864221         11       11110011111112233  5666666665 56799999


Q ss_pred             CCCCc
Q 040145          320 PSTDS  324 (402)
Q Consensus       320 ~~~~~  324 (402)
                      ..+.+
T Consensus       231 ~~~~~  235 (372)
T 1k8k_C          231 ADKKM  235 (372)
T ss_dssp             GGGTT
T ss_pred             CCCCc
Confidence            97664

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.36  E-value=0.029  Score=49.96  Aligned_cols=234  Identities=11%  Similarity=0.109  Sum_probs=107.9

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecC--CCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEE
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLT--HYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYE  180 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~--~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d  180 (402)
                      +..+|+.+...    ..+.+|+..  +.++..+..++...    . ...+++..++ .||+.+..       ...+.+||
T Consensus        49 g~~l~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~s~dg~~l~~~~~~-------~~~i~~~d  112 (343)
T 1ri6_A           49 KRYLYVGVRPE----FRVLAYRIAPDDGALTFAAESALPG----S-LTHISTDHQGQFVFVGSYN-------AGNVSVTR  112 (343)
T ss_dssp             SSEEEEEETTT----TEEEEEEECTTTCCEEEEEEEECSS----C-CSEEEECTTSSEEEEEETT-------TTEEEEEE
T ss_pred             CCEEEEeecCC----CeEEEEEecCCCCceeeccccccCC----C-CcEEEEcCCCCEEEEEecC-------CCeEEEEE
Confidence            44566654221    235555554  66766554333211    1 1223333344 46665532       23688888


Q ss_pred             CCCCc-eeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCC-CcEEEcC----CCCCCCcceeEEEE
Q 040145          181 MQKNR-WTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVK-GNWRTIA----SMGTNMASYDAAVL  252 (402)
Q Consensus       181 ~~t~~-W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~----~~~~~~~~~~~~~~  252 (402)
                      ..++. .+.+...........++..  +..+|+.+..      ...+.+||..+ ++...+.    ..+.. .....+.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  185 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK------QDRICLFTVSDDGHLVAQDPAEVTTVEG-AGPRHMVF  185 (343)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG------GTEEEEEEECTTSCEEEEEEEEEECSTT-CCEEEEEE
T ss_pred             CCCCccccccccccCCCCceEEEECCCCCEEEEecCC------CCEEEEEEecCCCceeeecccccccCCC-CCcceEEE
Confidence            84322 2222211111122233333  3367776532      45688999887 6555322    11111 12222333


Q ss_pred             --CCE-EEEEcccccCCccCCcEEEEeCC--CCCeeeccc--cccCC----CceeEEEE--CC-EEEEEeccCCcEEEEE
Q 040145          253 --DGK-LLVTEGWLWPFFVSPRGQVYDPS--TDNWESMAV--GLREG----WTGSSVVV--YE-HLFVVSELERMKLKVY  318 (402)
Q Consensus       253 --~g~-ly~~gG~~~~~~~~~~~~~yd~~--~~~W~~~~~--~~~~~----~~~~~~~~--~~-~l~~~gg~~~~~~~~y  318 (402)
                        +++ +|+.+..      ...+.+||..  ++++..+..  ..+..    .....+.+  ++ .||+.+. ....+.+|
T Consensus       186 ~pdg~~l~~~~~~------~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~-~~~~i~v~  258 (343)
T 1ri6_A          186 HPNEQYAYCVNEL------NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR-TASLITVF  258 (343)
T ss_dssp             CTTSSEEEEEETT------TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET-TTTEEEEE
T ss_pred             CCCCCEEEEEeCC------CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec-CCCEEEEE
Confidence              454 6666533      2368888884  455543221  12221    11112333  34 4655443 35678888


Q ss_pred             eCC--CCceeecCCCCCCccccCCeEEEE-eCCE-EEEEecCceeeeEEEEecccccc
Q 040145          319 DPS--TDSWETIEGPPLPEQICKPFAVNA-CDCR-VYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       319 d~~--~~~W~~~~~~~~p~~~~~~~~~~~-~~~~-i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                      |..  +.+++.+...+...  . ...++. .+++ ||+.++..+.  ..+|.+|+...
T Consensus       259 d~~~~~~~~~~~~~~~~~~--~-~~~~~~s~dg~~l~~~~~~~~~--v~v~~~d~~~g  311 (343)
T 1ri6_A          259 SVSEDGSVLSKEGFQPTET--Q-PRGFNVDHSGKYLIAAGQKSHH--ISVYEIVGEQG  311 (343)
T ss_dssp             EECTTSCCEEEEEEEECSS--S-CCCEEECTTSSEEEEECTTTCE--EEEEEEETTTT
T ss_pred             EEcCCCCceEEeeeecCCC--c-cceEEECCCCCEEEEecCCCCe--EEEEEEcCCCc
Confidence            887  55666654222211  1 223333 3454 5555543332  44666676544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.052  Score=49.80  Aligned_cols=203  Identities=9%  Similarity=0.024  Sum_probs=97.2

Q ss_pred             EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc----
Q 040145          121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR----  196 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r----  196 (402)
                      +.+||........+..-.       ....++.+..++..++.++.+       ..+.+||..+++....-......    
T Consensus       132 i~i~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          132 LRLWNKTGALLNVLNFHR-------APIVSVKWNKDGTHIISMDVE-------NVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             EEEEETTSCEEEEECCCC-------SCEEEEEECTTSSEEEEEETT-------CCEEEEETTTTEEEEEECCC-------
T ss_pred             EEEEeCCCCeeeeccCCC-------ccEEEEEECCCCCEEEEEecC-------CeEEEEECCCCcEEEEeeccccCccce
Confidence            667774444333333211       223344443456666666542       26889999887643321111110    


Q ss_pred             ----------cceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCccee-EEEE-CCEEEEEccccc
Q 040145          197 ----------SFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYD-AAVL-DGKLLVTEGWLW  264 (402)
Q Consensus       197 ----------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~-~~~~-~g~ly~~gG~~~  264 (402)
                                ....+....+..+++|+.      ...+.+||..+..-...  +........ .+.. ++.+++.|+.+ 
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-  268 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDKFVIPGP------KGAIFVYQITEKTPTGK--LIGHHGPISVLEFNDTNKLLLSASDD-  268 (425)
T ss_dssp             --------CCCBSCCEEEETTEEEEECG------GGCEEEEETTCSSCSEE--ECCCSSCEEEEEEETTTTEEEEEETT-
T ss_pred             eeccccCCcceeeEEEEcCCCEEEEEcC------CCeEEEEEcCCCceeee--eccCCCceEEEEECCCCCEEEEEcCC-
Confidence                      022233333344566654      45688999887642111  111111112 2222 66666666643 


Q ss_pred             CCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEE
Q 040145          265 PFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAV  343 (402)
Q Consensus       265 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~  343 (402)
                           ..+.+||..+.+-...-.... ......+.. ++ +++.++. ...+.+||..+.+-...-  ....  ....++
T Consensus       269 -----~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~-~l~~~~~-d~~i~i~d~~~~~~~~~~--~~~~--~~i~~~  336 (425)
T 1r5m_A          269 -----GTLRIWHGGNGNSQNCFYGHS-QSIVSASWVGDD-KVISCSM-DGSVRLWSLKQNTLLALS--IVDG--VPIFAG  336 (425)
T ss_dssp             -----SCEEEECSSSBSCSEEECCCS-SCEEEEEEETTT-EEEEEET-TSEEEEEETTTTEEEEEE--ECTT--CCEEEE
T ss_pred             -----CEEEEEECCCCccceEecCCC-ccEEEEEECCCC-EEEEEeC-CCcEEEEECCCCcEeEec--ccCC--ccEEEE
Confidence                 368899987754322211111 111112233 45 5555554 568999999876533221  1111  111222


Q ss_pred             E-EeCCEEEEEecCce
Q 040145          344 N-ACDCRVYVVGRNLH  358 (402)
Q Consensus       344 ~-~~~~~i~v~GG~~~  358 (402)
                      . ..++++++.|+.++
T Consensus       337 ~~s~~~~~l~~~~~dg  352 (425)
T 1r5m_A          337 RISQDGQKYAVAFMDG  352 (425)
T ss_dssp             EECTTSSEEEEEETTS
T ss_pred             EEcCCCCEEEEEECCC
Confidence            2 34677777777554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.0075  Score=60.96  Aligned_cols=221  Identities=10%  Similarity=0.050  Sum_probs=109.6

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccC--CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPRE--GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS  197 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~--~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~  197 (402)
                      .+.+||....++..+..+....    ....++....+  +..++.|+.+       ..+.+||..++.|..+..+.....
T Consensus        32 ~I~vwd~~~~~~~~~~~l~~h~----~~V~~l~~s~~~~~~~l~s~s~D-------g~I~vwd~~~~~~~~~~~~~~h~~  100 (753)
T 3jro_A           32 TIKIFEVEGETHKLIDTLTGHE----GPVWRVDWAHPKFGTILASCSYD-------GKVLIWKEENGRWSQIAVHAVHSA  100 (753)
T ss_dssp             EEEEEEEETTEEEEEEEECCCS----SCEEEEEECCTTSCSEEEEEETT-------SCEEEEEEETTEEEEEEEECCCSS
T ss_pred             cEEEEecCCCCCccceeccCCc----CceEEEEecCCCCCCEEEEEeCC-------CeEEEEECCCCcccccccccCCCC
Confidence            3777887766666554443211    22333444233  6777777763       269999999988766544432222


Q ss_pred             ce-EEEEE-C--CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE---------------CCEEEE
Q 040145          198 FF-ASGVI-G--GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL---------------DGKLLV  258 (402)
Q Consensus       198 ~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~---------------~g~ly~  258 (402)
                      .. ++... +  +.+++.|+.      ...+.+||..++.-.....+.........+..               ++.+++
T Consensus       101 ~V~~v~~sp~~~~~~l~sgs~------dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~  174 (753)
T 3jro_A          101 SVNSVQWAPHEYGPLLLVASS------DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV  174 (753)
T ss_dssp             CEEEEEECCGGGCSEEEEEET------TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEE
T ss_pred             CeEEEEECCCCCCCEEEEEeC------CCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEE
Confidence            22 33332 2  567777765      45688888876621111000111111112221               356666


Q ss_pred             EcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEE--C---CEEEEEeccCCcEEEEEeCCCCc--eeecC
Q 040145          259 TEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVV--Y---EHLFVVSELERMKLKVYDPSTDS--WETIE  329 (402)
Q Consensus       259 ~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~--~---~~l~~~gg~~~~~~~~yd~~~~~--W~~~~  329 (402)
                      .|+.+      ..+..||..++.  +..+.........-.++.+  +   +.+++.|+. ...+.+||..+..  +....
T Consensus       175 sgs~d------g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~  247 (753)
T 3jro_A          175 TGGAD------NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-DRTCIIWTQDNEQGPWKKTL  247 (753)
T ss_dssp             EEETT------SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES-SSCEEEEEESSSSSCCBCCB
T ss_pred             EEECC------CeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec-CCEEEEecCCCCCCcceeEE
Confidence            66653      358888876543  3333221111111112333  3   677777776 4568888887642  21111


Q ss_pred             CCCCC-ccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145          330 GPPLP-EQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       330 ~~~~p-~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      . ... ............++..++.||.++.    |..++.
T Consensus       248 ~-~~~~~~~~v~~l~~spdg~~l~s~s~Dg~----I~vwd~  283 (753)
T 3jro_A          248 L-KEEKFPDVLWRASWSLSGNVLALSGGDNK----VTLWKE  283 (753)
T ss_dssp             S-SSSCCSSCCCCEEECTTTCCEEEECSSSC----EECCBC
T ss_pred             e-ccCCCCCceEEEEEcCCCCEEEEEcCCCE----EEEEec
Confidence            0 111 1111112233457778888876544    455543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.31  E-value=0.085  Score=47.12  Aligned_cols=197  Identities=8%  Similarity=0.002  Sum_probs=95.3

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-G-GMIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      ++.+|+....... ......++++|+.+++....-+.  ......++.. + +.+|+.+..      ...+.+||+.+++
T Consensus        52 g~~l~~~~~~~~~-~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~  122 (353)
T 3vgz_A           52 ENALWLATSQSRK-LDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTV------NSAVTAIDAKTGE  122 (353)
T ss_dssp             TTEEEEEECCCTT-TEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETT------TTEEEEEETTTCC
T ss_pred             CCEEEEEcCCCcC-CCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecC------CCEEEEEeCCCCe
Confidence            4577776533110 01245899999998864332111  1112233333 3 468887764      4578999999876


Q ss_pred             EEEcCCCCCCC--------cceeEEEE-C-CEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCE
Q 040145          234 WRTIASMGTNM--------ASYDAAVL-D-GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEH  303 (402)
Q Consensus       234 W~~~~~~~~~~--------~~~~~~~~-~-g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  303 (402)
                      -...-......        .....+.. + +.+|+.+...     ...+.+||+.+.+-...-........+....-+++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          123 VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK  197 (353)
T ss_dssp             EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred             eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence            43221111110        11222332 4 4577665221     23689999987653322110111112222333444


Q ss_pred             -EEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-e-CCEEEEEecCceeeeEEEEecccccc
Q 040145          304 -LFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-C-DCRVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       304 -l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~-~~~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                       +|+. .. ...+.+||+.+.+-...-............+++. . ++.||+.....    +.++.+|+...
T Consensus       198 ~l~~~-~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~v~~~d~~~~  263 (353)
T 3vgz_A          198 RLYTT-NA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA----AEVLVVDTRNG  263 (353)
T ss_dssp             EEEEE-CT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS----SEEEEEETTTC
T ss_pred             EEEEE-cC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC----CEEEEEECCCC
Confidence             5554 33 4588999998875332211111101112223333 2 45577765432    34777776443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.30  E-value=0.049  Score=48.53  Aligned_cols=199  Identities=13%  Similarity=0.076  Sum_probs=102.4

Q ss_pred             EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcC
Q 040145          151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDP  229 (402)
Q Consensus       151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~  229 (402)
                      .++..++.||+.+..       ...+++||+.+++.+.+.... .....+++.. ++++|+....+...  ...+.+||+
T Consensus        50 ~~~~~~g~l~~~~~~-------~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~~--~~~i~~~d~  119 (333)
T 2dg1_A           50 LNFDRQGQLFLLDVF-------EGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDFKS--TGGIFAATE  119 (333)
T ss_dssp             EEECTTSCEEEEETT-------TCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTTSSS--CCEEEEECT
T ss_pred             cEECCCCCEEEEECC-------CCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCCCCC--CceEEEEeC
Confidence            344347788887654       237999999998876643111 1222333332 56788876432111  257899999


Q ss_pred             CCCcEEEc-CCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC-E
Q 040145          230 VKGNWRTI-ASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE-H  303 (402)
Q Consensus       230 ~t~~W~~~-~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~  303 (402)
                      .++..+.+ ...... .....+.+  +|.+|+.............++.||+.+++...+......  . ..+.+  ++ .
T Consensus       120 ~~~~~~~~~~~~~~~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~-~~i~~~~dg~~  195 (333)
T 2dg1_A          120 NGDNLQDIIEDLSTA-YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV--A-NGIALSTDEKV  195 (333)
T ss_dssp             TSCSCEEEECSSSSC-CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS--E-EEEEECTTSSE
T ss_pred             CCCEEEEEEccCccC-CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCc--c-cceEECCCCCE
Confidence            98876532 221111 12222233  678888653211111123689999887776655321111  1 12222  45 4


Q ss_pred             EEEEeccCCcEEEEEeCCCC--ceeecCC---CCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEeccc
Q 040145          304 LFVVSELERMKLKVYDPSTD--SWETIEG---PPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       304 l~~~gg~~~~~~~~yd~~~~--~W~~~~~---~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      ||+.... ...+++||..++  ....+..   ...+.. ....+++. .+|+||+.....+    .|..||+
T Consensus       196 l~v~~~~-~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~----~v~~~d~  261 (333)
T 2dg1_A          196 LWVTETT-ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQG----RVLVFNK  261 (333)
T ss_dssp             EEEEEGG-GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTT----EEEEECT
T ss_pred             EEEEeCC-CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCC----EEEEECC
Confidence            7766432 458999998642  2322110   001110 11223333 4678888764322    3677776

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.30  E-value=0.0089  Score=53.84  Aligned_cols=190  Identities=15%  Similarity=0.161  Sum_probs=95.1

Q ss_pred             CCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc-
Q 040145          116 TGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT-  194 (402)
Q Consensus       116 ~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~-  194 (402)
                      .....++.+|..+.++..+......     .....+++..+++||+.+...     ....+++||..+++++.+..+.. 
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~-----~~p~~~a~spdg~l~~~~~~~-----~~~~v~~~~~~~g~~~~~~~~~~~   84 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAAT-----QNPTYLALSAKDCLYSVDKED-----DEGGIAAWQIDGQTAHKLNTVVAP   84 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEEC-----SCCCCEEECTTCEEEEEEEET-----TEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeecc-----CCcceEEEccCCeEEEEEecC-----CCceEEEEEecCCcEEEeeeeecC
Confidence            3445677888888887654322211     111223333477787776421     13479999998888776654322 


Q ss_pred             cccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCC-CCcEEEcCCC------CCCCc---ceeEEEE--CCEEEEEc
Q 040145          195 ARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPV-KGNWRTIASM------GTNMA---SYDAAVL--DGKLLVTE  260 (402)
Q Consensus       195 ~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~------~~~~~---~~~~~~~--~g~ly~~g  260 (402)
                      ......++.. ++ .||+.+..      ...+.+||.. ++..+.+...      |..+.   ....+.+  +|++|+.+
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~  158 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVID  158 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEE
T ss_pred             CCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEe
Confidence            2222233333 34 57776632      3567788874 3343333211      11111   1122222  67777764


Q ss_pred             ccccCCccCCcEEEEeCC-CCCeeeccc-cccCCCceeEEEE--CCE-EEEEeccCCcEEEEEeCC--CCceeec
Q 040145          261 GWLWPFFVSPRGQVYDPS-TDNWESMAV-GLREGWTGSSVVV--YEH-LFVVSELERMKLKVYDPS--TDSWETI  328 (402)
Q Consensus       261 G~~~~~~~~~~~~~yd~~-~~~W~~~~~-~~~~~~~~~~~~~--~~~-l~~~gg~~~~~~~~yd~~--~~~W~~~  328 (402)
                      ..      ...+.+||+. +++...+.. ..+.......+.+  +|+ +|+.+.. ...+.+|+..  +.++..+
T Consensus       159 ~~------~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~-~~~v~v~~~~~~~g~~~~~  226 (347)
T 3hfq_A          159 LG------SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL-SSQIASLKYDTQTGAFTQL  226 (347)
T ss_dssp             TT------TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-TTEEEEEEEETTTTEEEEE
T ss_pred             CC------CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC-CCEEEEEEecCCCCceEEe
Confidence            42      2368889987 566554432 1111111111223  565 6665443 4455555544  5666544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.042  Score=49.58  Aligned_cols=195  Identities=11%  Similarity=0.042  Sum_probs=102.9

Q ss_pred             EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce-EEEEE-C--CEEEEEcCCCCCCCCCCeeE
Q 040145          150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF-ASGVI-G--GMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ++++..++..++.|+.+       ..+.+||...++++.+..+....... ++... +  +.+++.|+.      ...+.
T Consensus        16 ~~~~s~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~------dg~v~   82 (379)
T 3jrp_A           16 DAVLDYYGKRLATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY------DGKVL   82 (379)
T ss_dssp             EEEECSSSSEEEEEETT-------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET------TSCEE
T ss_pred             EEEEcCCCCEEEEEECC-------CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc------CCEEE
Confidence            33443466677777652       26888988766665544433222222 33332 2  566677765      34688


Q ss_pred             EEcCCCCcEEEcCCCCCCCcceeEEEE--C--CEEEEEcccccCCccCCcEEEEeCCCCCee-eccccccCCCceeEEEE
Q 040145          226 VLDPVKGNWRTIASMGTNMASYDAAVL--D--GKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVGLREGWTGSSVVV  300 (402)
Q Consensus       226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~--~--g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~~  300 (402)
                      +||..++.|..+..+.........+.+  +  +.+++.|+.+      ..+.+||+.+..-. ..............+..
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~  156 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWA  156 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEECCTTCEEEEEEC
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecCCCCceEEEEEc
Confidence            999999988766554443333333333  3  6677777653      36889998776322 11110111111111111


Q ss_pred             --------------CCEEEEEeccCCcEEEEEeCCCC--ceeecCCCCCCccccCCeEEEE-eC---CEEEEEecCceee
Q 040145          301 --------------YEHLFVVSELERMKLKVYDPSTD--SWETIEGPPLPEQICKPFAVNA-CD---CRVYVVGRNLHVA  360 (402)
Q Consensus       301 --------------~~~l~~~gg~~~~~~~~yd~~~~--~W~~~~~~~~p~~~~~~~~~~~-~~---~~i~v~GG~~~~~  360 (402)
                                    ++.+++.|+. ...+.+||..+.  .+..+..  +......-.+++. .+   +.+++.|+.+.. 
T Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~--~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-  232 (379)
T 3jrp_A          157 PATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQTYVLEST--LEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-  232 (379)
T ss_dssp             CCC----------CTTCEEEEEET-TSCEEEEEEETTTTEEEEEEE--ECCCSSCEEEEEECCCCSSSEEEEEEETTSC-
T ss_pred             CccccccccccCCCCCCEEEEEeC-CCeEEEEEecCCCcceeeEEE--EecccCcEeEEEECCCCCCCCeEEEEeCCCE-
Confidence                          4677777775 446888887554  3444431  2211111223333 34   678888876544 


Q ss_pred             eEEEEecc
Q 040145          361 VGHITRLS  368 (402)
Q Consensus       361 ~~~v~~~~  368 (402)
                       ..+|.++
T Consensus       233 -i~iwd~~  239 (379)
T 3jrp_A          233 -CIIWTQD  239 (379)
T ss_dssp             -EEEEEES
T ss_pred             -EEEEeCC
Confidence             3444444

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.29  E-value=0.02  Score=50.97  Aligned_cols=230  Identities=8%  Similarity=0.021  Sum_probs=112.5

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      .+.+|+....    ...+.+||+.+.+.......+.      ... .+++..++ .+|+.+..       ...+++||+.
T Consensus         9 ~~~~~v~~~~----~~~v~~~d~~~~~~~~~~~~~~------~~~-~~~~s~dg~~l~~~~~~-------~~~i~~~d~~   70 (331)
T 3u4y_A            9 SNFGIVVEQH----LRRISFFSTDTLEILNQITLGY------DFV-DTAITSDCSNVVVTSDF-------CQTLVQIETQ   70 (331)
T ss_dssp             CCEEEEEEGG----GTEEEEEETTTCCEEEEEECCC------CEE-EEEECSSSCEEEEEEST-------TCEEEEEECS
T ss_pred             CCEEEEEecC----CCeEEEEeCcccceeeeEEccC------Ccc-eEEEcCCCCEEEEEeCC-------CCeEEEEECC
Confidence            5677777633    3358899999888755433331      112 33443345 57777653       2389999999


Q ss_pred             CCce-e-ecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCE-E
Q 040145          183 KNRW-T-VMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGK-L  256 (402)
Q Consensus       183 t~~W-~-~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~-l  256 (402)
                      +++. . .+..-..+  .++++..  +..+| ++...+.   ...+.+||..+++-...-  +........+.. +|+ +
T Consensus        71 ~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~-~~~~~~~---~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l  142 (331)
T 3u4y_A           71 LEPPKVVAIQEGQSS--MADVDITPDDQFAV-TVTGLNH---PFNMQSYSFLKNKFISTI--PIPYDAVGIAISPNGNGL  142 (331)
T ss_dssp             SSSCEEEEEEECSSC--CCCEEECTTSSEEE-ECCCSSS---SCEEEEEETTTTEEEEEE--ECCTTEEEEEECTTSSCE
T ss_pred             CCceeEEecccCCCC--ccceEECCCCCEEE-EecCCCC---cccEEEEECCCCCeEEEE--ECCCCccceEECCCCCEE
Confidence            8874 2 22211111  1213332  33566 4332110   237999999988754331  111112233332 554 7


Q ss_pred             EEEcccccCCccCCc-EEEEeCCCCC-eeec-cccccCCCceeEEEE--CCE-EEEEeccCCcEEEEEeCCCCce-eecC
Q 040145          257 LVTEGWLWPFFVSPR-GQVYDPSTDN-WESM-AVGLREGWTGSSVVV--YEH-LFVVSELERMKLKVYDPSTDSW-ETIE  329 (402)
Q Consensus       257 y~~gG~~~~~~~~~~-~~~yd~~~~~-W~~~-~~~~~~~~~~~~~~~--~~~-l~~~gg~~~~~~~~yd~~~~~W-~~~~  329 (402)
                      |+.+...      .. +.+||...+. .... ....+.......+.+  +|+ +|+.+. ....+.+||+.+.+. ..+.
T Consensus       143 ~~~~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~d~~~~~~~~~~~  215 (331)
T 3u4y_A          143 ILIDRSS------ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL-IGNSIGILETQNPENITLLN  215 (331)
T ss_dssp             EEEEETT------TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET-TTTEEEEEECSSTTSCEEEE
T ss_pred             EEEecCC------CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC-CCCeEEEEECCCCcccceee
Confidence            7765431      24 7777765432 1111 111111111122333  565 666543 366899999987764 1122


Q ss_pred             CCCCCccccCCeEEEEeCCE-EEEEecCceeeeEEEEecccccc
Q 040145          330 GPPLPEQICKPFAVNACDCR-VYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       330 ~~~~p~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                      .++..  ..........+++ ||+.....    +.+..+|....
T Consensus       216 ~~~~~--~~~~~~~~spdg~~l~v~~~~~----~~i~~~d~~~~  253 (331)
T 3u4y_A          216 AVGTN--NLPGTIVVSRDGSTVYVLTEST----VDVFNFNQLSG  253 (331)
T ss_dssp             EEECS--SCCCCEEECTTSSEEEEECSSE----EEEEEEETTTT
T ss_pred             eccCC--CCCceEEECCCCCEEEEEEcCC----CEEEEEECCCC
Confidence            11111  1111223334555 66665533    33666776443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.07  Score=49.99  Aligned_cols=201  Identities=8%  Similarity=-0.012  Sum_probs=102.1

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee--cCCCcccc-cceEEEE-EC---CEEEEEcCCCCCCCCC
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV--MNKMITAR-SFFASGV-IG---GMIYVAGGSSADLFEL  221 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~--~~~~~~~r-~~~~~~~-~~---~~iyv~GG~~~~~~~~  221 (402)
                      .++.+..++..+++|+.       ...+++|+..+.....  ...+.... .-.+++. -+   +++++.|+.      -
T Consensus       153 ~~~~~sp~~~~l~~~~~-------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~------d  219 (450)
T 2vdu_B          153 NAISIAEDDTTVIIADK-------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR------D  219 (450)
T ss_dssp             EEEEECTTSSEEEEEET-------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET------T
T ss_pred             eEEEEcCCCCEEEEEeC-------CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC------C
Confidence            34444446666666654       2368899987665332  11222111 1122333 35   677777775      3


Q ss_pred             CeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCCeee-cccc-----c-----
Q 040145          222 DSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVG-----L-----  289 (402)
Q Consensus       222 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~-----~-----  289 (402)
                      ..+.+||..+......- +.........+.+ ++.+++.|+.+      ..+.+||..+++-.. +...     .     
T Consensus       220 ~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~sd~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (450)
T 2vdu_B          220 EHIKISHYPQCFIVDKW-LFGHKHFVSSICCGKDYLLLSAGGD------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH  292 (450)
T ss_dssp             SCEEEEEESCTTCEEEE-CCCCSSCEEEEEECSTTEEEEEESS------SEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred             CcEEEEECCCCceeeee-ecCCCCceEEEEECCCCEEEEEeCC------CeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence            46888898776532210 1111111122222 77777777743      378899998876332 1100     0     


Q ss_pred             ------------cCCCceeEEEE--CCEEEEEeccCCcEEEEEeC--CC-CceeecCCCCCCccccCCeEEEEeCCEEEE
Q 040145          290 ------------REGWTGSSVVV--YEHLFVVSELERMKLKVYDP--ST-DSWETIEGPPLPEQICKPFAVNACDCRVYV  352 (402)
Q Consensus       290 ------------~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~--~~-~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v  352 (402)
                                  .....-..+..  +++.+++++.....+.+||.  .+ ..+..+..+...   ....+++...+.+++
T Consensus       293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v  369 (450)
T 2vdu_B          293 LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQV  369 (450)
T ss_dssp             BC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEE
T ss_pred             cccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEE
Confidence                        00011111222  45555555534567888887  33 445555422222   223455566677777


Q ss_pred             EecCce-----eeeEEEEecccccc
Q 040145          353 VGRNLH-----VAVGHITRLSTSEK  372 (402)
Q Consensus       353 ~GG~~~-----~~~~~v~~~~~~~~  372 (402)
                      ..+...     .....++.++...+
T Consensus       370 ~~~~~~~~~~~~~~i~v~~~~~~~~  394 (450)
T 2vdu_B          370 TLDNKESSGVQKNFAKFIEYNLNEN  394 (450)
T ss_dssp             EECCTTCCSSCCCSEEEEEEETTTT
T ss_pred             EEecccCCCCCCcceEEEEEEcCCC
Confidence            766542     23357888776554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.27  E-value=0.032  Score=48.28  Aligned_cols=164  Identities=14%  Similarity=0.108  Sum_probs=98.2

Q ss_pred             eEEEEEC-CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeC
Q 040145          199 FASGVIG-GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDP  277 (402)
Q Consensus       199 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~  277 (402)
                      +++...+ +.+|+..|..+    .+.+.++|+.|++-..--+++......+.+..+++||+..-.      .+.+.+||+
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~------~~~v~viD~   93 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL------KNIGFIYDR   93 (266)
T ss_dssp             EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT------CSEEEEEET
T ss_pred             ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec------CCEEEEEEC
Confidence            5666655 79999877422    467999999999854433344433445566678899998643      357999999


Q ss_pred             CCCCe-eeccccccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCCcee-ecCCCCCCccccCCeEEEEeCCEEEEEe
Q 040145          278 STDNW-ESMAVGLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTDSWE-TIEGPPLPEQICKPFAVNACDCRVYVVG  354 (402)
Q Consensus       278 ~~~~W-~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~-~~~~~~~p~~~~~~~~~~~~~~~i~v~G  354 (402)
                      ++.+= .+++...+   .+..... ++++|+..|  .+.+.++|+++.+=. .+..-..+........+...+++||+--
T Consensus        94 ~t~~v~~~i~~g~~---~g~glt~Dg~~l~vs~g--s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~  168 (266)
T 2iwa_A           94 RTLSNIKNFTHQMK---DGWGLATDGKILYGSDG--TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANI  168 (266)
T ss_dssp             TTTEEEEEEECCSS---SCCEEEECSSSEEEECS--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred             CCCcEEEEEECCCC---CeEEEEECCCEEEEECC--CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEec
Confidence            87642 22332112   2233333 466887654  569999999886532 2221011111122234445588998764


Q ss_pred             cCceeeeEEEEecccccccCceeeeEEEEe
Q 040145          355 RNLHVAVGHITRLSTSEKKWSFSVQWQVVD  384 (402)
Q Consensus       355 G~~~~~~~~v~~~~~~~~~~~~~~~W~~~~  384 (402)
                      ..    .++|.+.|+...   +-..|..+.
T Consensus       169 ~~----~~~V~vID~~tg---~V~~~I~~~  191 (266)
T 2iwa_A          169 WQ----TDCIARISAKDG---TLLGWILLP  191 (266)
T ss_dssp             TT----SSEEEEEETTTC---CEEEEEECH
T ss_pred             CC----CCeEEEEECCCC---cEEEEEECC
Confidence            32    246888888655   344555543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.27  E-value=0.058  Score=48.08  Aligned_cols=203  Identities=15%  Similarity=0.112  Sum_probs=103.5

Q ss_pred             eEEEeecCCCcEEe-CCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccc-cc
Q 040145          120 QWQVLDLTHYCWHT-IPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITA-RS  197 (402)
Q Consensus       120 ~~~~~d~~~~~W~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~-r~  197 (402)
                      .+.++|..+.+-.. +..-+       .....+++..++..++.|+.+       ..+.+||..+++-...  +... ..
T Consensus       103 ~i~lWd~~~~~~~~~~~~~~-------~~~~~~~~spdg~~l~~g~~d-------g~v~i~~~~~~~~~~~--~~~~~~~  166 (321)
T 3ow8_A          103 HIRLWDLENGKQIKSIDAGP-------VDAWTLAFSPDSQYLATGTHV-------GKVNIFGVESGKKEYS--LDTRGKF  166 (321)
T ss_dssp             EEEEEETTTTEEEEEEECCT-------TCCCCEEECTTSSEEEEECTT-------SEEEEEETTTCSEEEE--EECSSSC
T ss_pred             cEEEEECCCCCEEEEEeCCC-------ccEEEEEECCCCCEEEEEcCC-------CcEEEEEcCCCceeEE--ecCCCce
Confidence            46788887765422 21111       111223333467777777652       3788999887653221  1111 11


Q ss_pred             ceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEE
Q 040145          198 FFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQV  274 (402)
Q Consensus       198 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~  274 (402)
                      ..+++.. +++.++.|+.      ...+.+||..+++-...  +.........+.+  ++.+++.|+.+      ..+.+
T Consensus       167 v~~~~~spdg~~lasg~~------dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~d------g~i~i  232 (321)
T 3ow8_A          167 ILSIAYSPDGKYLASGAI------DGIINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASDD------GYIKI  232 (321)
T ss_dssp             EEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECTT------SCEEE
T ss_pred             EEEEEECCCCCEEEEEcC------CCeEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcCC------CeEEE
Confidence            1222222 5667777765      34688999988753221  1111111222223  67777777753      36889


Q ss_pred             EeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCCEEE
Q 040145          275 YDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDCRVY  351 (402)
Q Consensus       275 yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~  351 (402)
                      ||..+..-...-.  .....-..+.+  ++..++.|+. ...+.+||..+.+-...    +......-.++.. .+++.+
T Consensus       233 wd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~-D~~v~iwd~~~~~~~~~----~~~h~~~v~~v~~s~~g~~l  305 (321)
T 3ow8_A          233 YDVQHANLAGTLS--GHASWVLNVAFCPDDTHFVSSSS-DKSVKVWDVGTRTCVHT----FFDHQDQVWGVKYNGNGSKI  305 (321)
T ss_dssp             EETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEEEEE----ECCCSSCEEEEEECTTSSEE
T ss_pred             EECCCcceeEEEc--CCCCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCEEEEE----EcCCCCcEEEEEECCCCCEE
Confidence            9988765432211  11111112233  5677777665 45799999987643322    1111011123333 466777


Q ss_pred             EEecCcee
Q 040145          352 VVGRNLHV  359 (402)
Q Consensus       352 v~GG~~~~  359 (402)
                      +.||.+..
T Consensus       306 ~s~~~d~~  313 (321)
T 3ow8_A          306 VSVGDDQE  313 (321)
T ss_dssp             EEEETTCC
T ss_pred             EEEeCCCe
Confidence            77776544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.25  E-value=0.03  Score=49.33  Aligned_cols=222  Identities=14%  Similarity=0.080  Sum_probs=109.7

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccC-CEEEEEeCccCCCCCCCceEEEEECCCCceeec-CCCccc--
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPRE-GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVM-NKMITA--  195 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~-~~~~~~--  195 (402)
                      .+++||+.++++..+.. +... .........++..+ +.||+....        +.+++||+. ++.+.+ ......  
T Consensus        47 ~i~~~d~~~g~~~~~~~-~~~~-~~~~~~~~i~~~~~~g~l~v~~~~--------~~l~~~d~~-g~~~~~~~~~~~~~~  115 (314)
T 1pjx_A           47 EILRIDLKTGKKTVICK-PEVN-GYGGIPAGCQCDRDANQLFVADMR--------LGLLVVQTD-GTFEEIAKKDSEGRR  115 (314)
T ss_dssp             EEEEECTTTCCEEEEEC-CEET-TEECCEEEEEECSSSSEEEEEETT--------TEEEEEETT-SCEEECCSBCTTSCB
T ss_pred             EEEEEeCCCCcEEEEEe-cccC-CCCCCCceEEEecCCCcEEEEECC--------CCEEEEeCC-CCEEEEEeccCCCcc
Confidence            48889988888765532 1000 00011223334345 788887642        269999998 776655 322111  


Q ss_pred             -ccceEEEE-ECCEEEEEcCCC---------CCCCCCCeeEEEcCCCCcEEEcC-CCCCCCcceeEEEE-----CC-EEE
Q 040145          196 -RSFFASGV-IGGMIYVAGGSS---------ADLFELDSAEVLDPVKGNWRTIA-SMGTNMASYDAAVL-----DG-KLL  257 (402)
Q Consensus       196 -r~~~~~~~-~~~~iyv~GG~~---------~~~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~~-----~g-~ly  257 (402)
                       .....++. -++++|+.....         ........+++||+. ++...+. ....+   ...+..     ++ .+|
T Consensus       116 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~---~~i~~~~~~d~dg~~l~  191 (314)
T 1pjx_A          116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP---NGIAVRHMNDGRPYQLI  191 (314)
T ss_dssp             CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE---EEEEEEECTTSCEEEEE
T ss_pred             ccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc---ceEEEecccCCCCCEEE
Confidence             11223333 357888875432         011113578899987 5554431 11111   122222     34 467


Q ss_pred             EEcccccCCccCCcEEEEeCC-CCCeeeccc--cccCC--CceeEEE--ECCEEEEEeccCCcEEEEEeCCCCceeecCC
Q 040145          258 VTEGWLWPFFVSPRGQVYDPS-TDNWESMAV--GLREG--WTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWETIEG  330 (402)
Q Consensus       258 ~~gG~~~~~~~~~~~~~yd~~-~~~W~~~~~--~~~~~--~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~  330 (402)
                      +....      ...+.+||+. +++......  ..+..  .....+.  -+|.+|+.... ...+.+||+++.+....- 
T Consensus       192 v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-~~~i~~~d~~~g~~~~~~-  263 (314)
T 1pjx_A          192 VAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-SSHIEVFGPDGGQPKMRI-  263 (314)
T ss_dssp             EEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-TTEEEEECTTCBSCSEEE-
T ss_pred             EEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-CCEEEEEcCCCCcEeEEE-
Confidence            76432      2468889876 443322111  01111  1111222  36888876432 458999999854432211 


Q ss_pred             CCCCccccCCeEEEE-eCCE-EEEEecCceeeeEEEEeccccc
Q 040145          331 PPLPEQICKPFAVNA-CDCR-VYVVGRNLHVAVGHITRLSTSE  371 (402)
Q Consensus       331 ~~~p~~~~~~~~~~~-~~~~-i~v~GG~~~~~~~~v~~~~~~~  371 (402)
                       ..+.  ....+++. .+++ ||+.....    +.++.+++..
T Consensus       264 -~~~~--~~~~~i~~~~dg~~l~v~~~~~----~~l~~~~~~~  299 (314)
T 1pjx_A          264 -RCPF--EKPSNLHFKPQTKTIFVTEHEN----NAVWKFEWQR  299 (314)
T ss_dssp             -ECSS--SCEEEEEECTTSSEEEEEETTT----TEEEEEECSS
T ss_pred             -eCCC--CCceeEEECCCCCEEEEEeCCC----CeEEEEeCCC
Confidence             2221  22233433 3555 87776543    2477777543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.25  E-value=0.059  Score=48.52  Aligned_cols=185  Identities=9%  Similarity=0.084  Sum_probs=91.1

Q ss_pred             EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc-eeecCCCccc--cc
Q 040145          121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR-WTVMNKMITA--RS  197 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~-W~~~~~~~~~--r~  197 (402)
                      +.+||..+.++.....+....    ....++.+..++..++.|+.+       ..+.+||..++. |........+  ..
T Consensus        76 i~vwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d-------~~v~i~d~~~~~~~~~~~~~~~~~~~~  144 (372)
T 1k8k_C           76 AYVWTLKGRTWKPTLVILRIN----RAARCVRWAPNEKKFAVGSGS-------RVISICYFEQENDWWVCKHIKKPIRST  144 (372)
T ss_dssp             EEEEEEETTEEEEEEECCCCS----SCEEEEEECTTSSEEEEEETT-------SSEEEEEEETTTTEEEEEEECTTCCSC
T ss_pred             EEEEECCCCeeeeeEEeecCC----CceeEEEECCCCCEEEEEeCC-------CEEEEEEecCCCcceeeeeeecccCCC
Confidence            778888887765432222111    223444444466677777652       257788877654 3222211111  11


Q ss_pred             ceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc---------E-------EEcCCCCCCCcceeEEEE--CCEEEE
Q 040145          198 FFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN---------W-------RTIASMGTNMASYDAAVL--DGKLLV  258 (402)
Q Consensus       198 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---------W-------~~~~~~~~~~~~~~~~~~--~g~ly~  258 (402)
                      -.++... ++..++.|+.      ...+.+||.....         |       ..+..+.........+.+  ++..++
T Consensus       145 i~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  218 (372)
T 1k8k_C          145 VLSLDWHPNSVLLAAGSC------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  218 (372)
T ss_dssp             EEEEEECTTSSEEEEEET------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             eeEEEEcCCCCEEEEEcC------CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence            2222332 4566677765      3457888854211         1       111112211122223333  566666


Q ss_pred             EcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCC--CceeecCC
Q 040145          259 TEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPST--DSWETIEG  330 (402)
Q Consensus       259 ~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~--~~W~~~~~  330 (402)
                      .|+.+      ..+..||..+.+-...-......-......-++.+++.| . ...+.+||..+  ++|..+..
T Consensus       219 ~~~~d------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~~~~~~~~~~~~~~~  284 (372)
T 1k8k_C          219 WVSHD------STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-H-DCFPVLFTYDSAAGKLSFGGR  284 (372)
T ss_dssp             EEETT------TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-T-TSSCEEEEEETTTTEEEECCC
T ss_pred             EEeCC------CEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-e-CCeEEEEEccCcCceEEEeec
Confidence            66643      368899988765322111111111111223477766665 3 45677777776  88876643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.23  E-value=0.054  Score=50.33  Aligned_cols=185  Identities=9%  Similarity=-0.007  Sum_probs=102.0

Q ss_pred             eeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCE-EEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145          119 IQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGT-LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS  197 (402)
Q Consensus       119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~  197 (402)
                      ..++++|..+.+...+...+       ..........+++ |++.+..+     ....++++|..+++.+.+.....  .
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~-------~~~~~~~~spdg~~la~~~~~~-----g~~~i~~~d~~~~~~~~l~~~~~--~  268 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFP-------RHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLASGQIRQVTDGRS--N  268 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCS-------SCEEEEEECTTSSEEEEEECTT-----SSCEEEEEETTTCCEEECCCCSS--C
T ss_pred             cEEEEEECCCCcEEEeecCC-------CcccCEEEcCCCCEEEEEEecC-----CCceEEEEECCCCCEEeCcCCCC--c
Confidence            46788888887766554332       2233444444554 55455432     23479999999988766543221  1


Q ss_pred             ceEEEEE-CCE-EEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEE
Q 040145          198 FFASGVI-GGM-IYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQ  273 (402)
Q Consensus       198 ~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~  273 (402)
                      ....... +++ |++.+..++    ...++++|..++.-..+...  . .......+  +|+.+++++..+.   ...++
T Consensus       269 ~~~~~~spdg~~l~~~s~~~g----~~~i~~~d~~~~~~~~l~~~--~-~~~~~~~~spdG~~l~~~~~~~g---~~~i~  338 (415)
T 2hqs_A          269 NTEPTWFPDSQNLAFTSDQAG----RPQVYKVNINGGAPQRITWE--G-SQNQDADVSSDGKFMVMVSSNGG---QQHIA  338 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTS----SCEEEEEETTSSCCEECCCS--S-SEEEEEEECTTSSEEEEEEECSS---CEEEE
T ss_pred             ccceEECCCCCEEEEEECCCC----CcEEEEEECCCCCEEEEecC--C-CcccCeEECCCCCEEEEEECcCC---ceEEE
Confidence            1222222 444 444443221    35788999988765544221  1 11222222  6665555543211   23789


Q ss_pred             EEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCC--cEEEEEeCCCCceeecC
Q 040145          274 VYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELER--MKLKVYDPSTDSWETIE  329 (402)
Q Consensus       274 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~--~~~~~yd~~~~~W~~~~  329 (402)
                      .+|+.+++...+... . ........-+|+.+++++.+.  ..++.+|...+....+.
T Consensus       339 ~~d~~~~~~~~l~~~-~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~  394 (415)
T 2hqs_A          339 KQDLATGGVQVLSST-F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  394 (415)
T ss_dssp             EEETTTCCEEECCCS-S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred             EEECCCCCEEEecCC-C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence            999999887666542 1 111111223677666666543  37999999877666654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.22  E-value=0.024  Score=52.87  Aligned_cols=179  Identities=12%  Similarity=0.037  Sum_probs=97.5

Q ss_pred             EEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCC
Q 040145          152 SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVK  231 (402)
Q Consensus       152 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t  231 (402)
                      ++..++..++.|+.+       ..+.+||..+++-...  +............++.+++.|+.      ...+.+||..+
T Consensus       138 ~~~~d~~~l~~g~~d-------g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sg~~------dg~i~vwd~~~  202 (435)
T 1p22_A          138 CLQYDDQKIVSGLRD-------NTIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSS------DSTVRVWDVNT  202 (435)
T ss_dssp             EEECCSSEEEEEESS-------SCEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEET------TSCEEEEESSS
T ss_pred             EEEECCCEEEEEeCC-------CeEEEEeCCCCeEEEE--EcCCCCcEEEEEECCCEEEEEcC------CCeEEEEECCC
Confidence            333477788888763       3799999988753322  11111222333347777788876      34688999988


Q ss_pred             CcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecccccc-CCCceeEEEECCEEEEEecc
Q 040145          232 GNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLR-EGWTGSSVVVYEHLFVVSEL  310 (402)
Q Consensus       232 ~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~l~~~gg~  310 (402)
                      +.-...  +.........+..++..++.|+.+      ..+.+||..+..-........ ....-.++..++..++.|+.
T Consensus       203 ~~~~~~--~~~h~~~v~~l~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~  274 (435)
T 1p22_A          203 GEMLNT--LIHHCEAVLHLRFNNGMMVTCSKD------RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG  274 (435)
T ss_dssp             CCEEEE--ECCCCSCEEEEECCTTEEEEEETT------SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEET
T ss_pred             CcEEEE--EcCCCCcEEEEEEcCCEEEEeeCC------CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeC
Confidence            764321  222222333444456666666653      368899988765321111011 11111224446776666665


Q ss_pred             CCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145          311 ERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV  359 (402)
Q Consensus       311 ~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~  359 (402)
                       ...+.+||..+.+-...-  ...   ......+..++.+++.|+.++.
T Consensus       275 -dg~i~vwd~~~~~~~~~~--~~~---~~~v~~~~~~~~~l~~g~~dg~  317 (435)
T 1p22_A          275 -DRTIKVWNTSTCEFVRTL--NGH---KRGIACLQYRDRLVVSGSSDNT  317 (435)
T ss_dssp             -TSEEEEEETTTCCEEEEE--ECC---SSCEEEEEEETTEEEEEETTSC
T ss_pred             -CCeEEEEECCcCcEEEEE--cCC---CCcEEEEEeCCCEEEEEeCCCe
Confidence             557999999876433211  111   1222334456777777776544

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.21  E-value=0.023  Score=50.16  Aligned_cols=182  Identities=9%  Similarity=0.049  Sum_probs=91.7

Q ss_pred             EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEc
Q 040145          150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLD  228 (402)
Q Consensus       150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd  228 (402)
                      ++.+..++..++.|+.+       ..+.+||..+++....-.- ....-..++.. ++++++.|+.      ...+.+||
T Consensus        28 ~~~~s~~~~~l~s~~~d-------g~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~------d~~i~vwd   93 (312)
T 4ery_A           28 SVKFSPNGEWLASSSAD-------KLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSASD------DKTLKIWD   93 (312)
T ss_dssp             EEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEET------TSEEEEEE
T ss_pred             EEEECCCCCEEEEeeCC-------CeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEECC------CCEEEEEE
Confidence            33443466677777652       2688899888765442110 11111222222 4566677765      45688999


Q ss_pred             CCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEE
Q 040145          229 PVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHL  304 (402)
Q Consensus       229 ~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l  304 (402)
                      ..++.-...  +.........+.+  ++.+++.|+.+      ..+..||+.+++-...-.....  .-..+.+  ++.+
T Consensus        94 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~  163 (312)
T 4ery_A           94 VSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVKTGKCLKTLPAHSD--PVSAVHFNRDGSL  163 (312)
T ss_dssp             TTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSE
T ss_pred             CCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCEEEEEecCCCC--cEEEEEEcCCCCE
Confidence            887653221  1111111222222  56666777653      3688999987653221110111  1112222  5677


Q ss_pred             EEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCce
Q 040145          305 FVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLH  358 (402)
Q Consensus       305 ~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~  358 (402)
                      ++.|+. ...+.+||..+.+-...-  ...............+++.++.|+.++
T Consensus       164 l~~~~~-d~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
T 4ery_A          164 IVSSSY-DGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDN  214 (312)
T ss_dssp             EEEEET-TSCEEEEETTTCCEEEEE--CCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             EEEEeC-CCcEEEEECCCCceeeEE--eccCCCceEEEEECCCCCEEEEEcCCC
Confidence            777765 457999999876543221  111100111122234667777776554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.18  E-value=0.026  Score=49.74  Aligned_cols=216  Identities=13%  Similarity=0.063  Sum_probs=110.0

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+|+..    .....+++||+.++....+. .+       ..-...++..++.+|+..+         ..+++||+.+
T Consensus        24 ~~~l~~~d----~~~~~i~~~d~~~~~~~~~~-~~-------~~~~~i~~~~dG~l~v~~~---------~~l~~~d~~~   82 (297)
T 3g4e_A           24 SNSLLFVD----IPAKKVCRWDSFTKQVQRVT-MD-------APVSSVALRQSGGYVATIG---------TKFCALNWKE   82 (297)
T ss_dssp             TTEEEEEE----TTTTEEEEEETTTCCEEEEE-CS-------SCEEEEEEBTTSSEEEEET---------TEEEEEETTT
T ss_pred             CCEEEEEE----CCCCEEEEEECCCCcEEEEe-CC-------CceEEEEECCCCCEEEEEC---------CeEEEEECCC
Confidence            46677765    23345889999887654432 12       1223444445677776532         2799999999


Q ss_pred             CceeecCCCcc--cccceEEEE--ECCEEEEEcCCCC-----CCCCCCeeEEEcCCCCcEEEc-CCCCCCCcceeEEEE-
Q 040145          184 NRWTVMNKMIT--ARSFFASGV--IGGMIYVAGGSSA-----DLFELDSAEVLDPVKGNWRTI-ASMGTNMASYDAAVL-  252 (402)
Q Consensus       184 ~~W~~~~~~~~--~r~~~~~~~--~~~~iyv~GG~~~-----~~~~~~~~~~yd~~t~~W~~~-~~~~~~~~~~~~~~~-  252 (402)
                      ++++.+.....  +........  -++++|+..-...     .......++.||+.. ....+ ..+.    ......+ 
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~----~pngi~~s  157 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVD----ISNGLDWS  157 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEES----BEEEEEEC
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccc----cccceEEc
Confidence            98876543321  111122222  2577777431111     011145688888753 33322 1111    1222333 


Q ss_pred             -CC-EEEEEcccccCCccCCcEEEEeC--CCCCeeeccc--cccC--CC-ceeEEEECCEEEEEeccCCcEEEEEeCCCC
Q 040145          253 -DG-KLLVTEGWLWPFFVSPRGQVYDP--STDNWESMAV--GLRE--GW-TGSSVVVYEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       253 -~g-~ly~~gG~~~~~~~~~~~~~yd~--~~~~W~~~~~--~~~~--~~-~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                       ++ .+|+....      .+.+++||.  .++.......  ..+.  .. .+.++--+|+||+... ....|.+||+++.
T Consensus       158 pdg~~lyv~~~~------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~~~~v~~~d~~tG  230 (297)
T 3g4e_A          158 LDHKIFYYIDSL------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-NGGRVIRLDPVTG  230 (297)
T ss_dssp             TTSCEEEEEEGG------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-TTTEEEEECTTTC
T ss_pred             CCCCEEEEecCC------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-CCCEEEEEcCCCc
Confidence             44 57877543      246788875  5555432111  0111  11 1112223788887643 3557999999876


Q ss_pred             ceeecCCCCCCccccCCeEEEEe---CCEEEEEecC
Q 040145          324 SWETIEGPPLPEQICKPFAVNAC---DCRVYVVGRN  356 (402)
Q Consensus       324 ~W~~~~~~~~p~~~~~~~~~~~~---~~~i~v~GG~  356 (402)
                      +....-  .+|.  ....+++.-   ++.|||....
T Consensus       231 ~~~~~i--~~p~--~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          231 KRLQTV--KLPV--DKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             CEEEEE--ECSS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred             eEEEEE--ECCC--CCceEEEEeCCCCCEEEEEcCC
Confidence            544332  2442  122233332   2478988764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.17  E-value=0.021  Score=51.37  Aligned_cols=240  Identities=10%  Similarity=0.053  Sum_probs=111.2

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC-
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ-  182 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~-  182 (402)
                      ++.+|+....  .....+.+||..+.++..+.......   ......+....+..||+.+..       ...+.+||.. 
T Consensus        50 dg~l~~~~~~--~~~~~v~~~~~~~g~~~~~~~~~~~~---~~p~~~a~spdg~~l~~~~~~-------~~~v~v~~~~~  117 (347)
T 3hfq_A           50 KDCLYSVDKE--DDEGGIAAWQIDGQTAHKLNTVVAPG---TPPAYVAVDEARQLVYSANYH-------KGTAEVMKIAA  117 (347)
T ss_dssp             TCEEEEEEEE--TTEEEEEEEEEETTEEEEEEEEEEES---CCCSEEEEETTTTEEEEEETT-------TTEEEEEEECT
T ss_pred             CCeEEEEEec--CCCceEEEEEecCCcEEEeeeeecCC---CCCEEEEECCCCCEEEEEeCC-------CCEEEEEEeCC
Confidence            4557776543  12345888888777766554321111   011223333223457766532       2368888874 


Q ss_pred             CCceeecCCCcc------cc----cceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCC-CCcEEEcCCCCCC-CcceeE
Q 040145          183 KNRWTVMNKMIT------AR----SFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPV-KGNWRTIASMGTN-MASYDA  249 (402)
Q Consensus       183 t~~W~~~~~~~~------~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~-~~~~~~  249 (402)
                      +++.+.+.....      +|    ..+.++.. ++++|+.+..      ...+.+||.. ++....+...... ......
T Consensus       118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~------~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~  191 (347)
T 3hfq_A          118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG------SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH  191 (347)
T ss_dssp             TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT------TTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred             CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC------CCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence            444433322111      11    12223332 5667776543      3578889987 5555543221111 111222


Q ss_pred             EEE--CCE-EEEEcccccCCccCCcEEEEeCC--CCCeeeccc--cccCC----CceeEEEE--CCE-EEEEeccCCcEE
Q 040145          250 AVL--DGK-LLVTEGWLWPFFVSPRGQVYDPS--TDNWESMAV--GLREG----WTGSSVVV--YEH-LFVVSELERMKL  315 (402)
Q Consensus       250 ~~~--~g~-ly~~gG~~~~~~~~~~~~~yd~~--~~~W~~~~~--~~~~~----~~~~~~~~--~~~-l~~~gg~~~~~~  315 (402)
                      +.+  +|+ +|+.+...      ..+.+||..  ++++..+..  ..+..    .....+.+  +|+ ||+... ..+.+
T Consensus       192 ~~~spdg~~l~v~~~~~------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~-~~~~v  264 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELS------SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR-GYNTL  264 (347)
T ss_dssp             EEECTTSSEEEEEETTT------TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE-TTTEE
T ss_pred             EEECCCCCEEEEEeCCC------CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC-CCCEE
Confidence            222  665 77765432      245556554  566654332  11211    11112333  565 666543 35678


Q ss_pred             EEEeCCCC-ceeecCCCCCCccccCCeEEEE-eCCE-EEEEecCceeeeEEEEecccccc
Q 040145          316 KVYDPSTD-SWETIEGPPLPEQICKPFAVNA-CDCR-VYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       316 ~~yd~~~~-~W~~~~~~~~p~~~~~~~~~~~-~~~~-i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                      .+||...+ +++.+...+..  ......++. .+++ ||+.+...+.  ..+|.+|+...
T Consensus       265 ~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~--v~v~~~d~~tg  320 (347)
T 3hfq_A          265 AVFAVTADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDN--ATLYARDLTSG  320 (347)
T ss_dssp             EEEEECGGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTE--EEEEEECTTTC
T ss_pred             EEEEECCCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCc--EEEEEEeCCCC
Confidence            88887632 45554422221  112223333 4555 6665543332  44555565443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.17  E-value=0.072  Score=47.94  Aligned_cols=190  Identities=9%  Similarity=0.097  Sum_probs=96.5

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+++.++.+.    .+.+||....+|.....+...   ......++++..++..++.|+.+       ..+.+||..+
T Consensus        27 ~g~~las~~~D~----~i~iw~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~g~~l~s~s~D-------~~v~iw~~~~   92 (345)
T 3fm0_A           27 AGTLLASCGGDR----RIRIWGTEGDSWICKSVLSEG---HQRTVRKVAWSPCGNYLASASFD-------ATTCIWKKNQ   92 (345)
T ss_dssp             TSSCEEEEETTS----CEEEEEEETTEEEEEEEECSS---CSSCEEEEEECTTSSEEEEEETT-------SCEEEEEECC
T ss_pred             CCCEEEEEcCCC----eEEEEEcCCCcceeeeeeccc---cCCcEEEEEECCCCCEEEEEECC-------CcEEEEEccC
Confidence            344455554332    367788877776432211100   01223445554567777888763       2578888877


Q ss_pred             CceeecCCCcccccc-eEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcCCCCCCCcceeEEEE--CCEEEE
Q 040145          184 NRWTVMNKMITARSF-FASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIASMGTNMASYDAAVL--DGKLLV  258 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~~~~~~~--~g~ly~  258 (402)
                      +.+..+..+...... .+++.. ++++++.|+.      -..+.+||..+.. +..+..+.........+..  ++.+++
T Consensus        93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  166 (345)
T 3fm0_A           93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSR------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA  166 (345)
T ss_dssp             C-EEEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEE
T ss_pred             CCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEE
Confidence            766544333222111 223332 4667777765      3457888876543 3322222222222222333  566777


Q ss_pred             EcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeC
Q 040145          259 TEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDP  320 (402)
Q Consensus       259 ~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~  320 (402)
                      .|+.+      ..+..||..++.|..+.........-..+.+  +++.++.|+.+ ..+.+||.
T Consensus       167 s~s~d------~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D-~~v~iW~~  223 (345)
T 3fm0_A          167 SASYD------DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD-RTVRIWRQ  223 (345)
T ss_dssp             EEETT------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT-SCEEEEEE
T ss_pred             EEeCC------CcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC-CeEEEecc
Confidence            77653      3688899888877654331111111112333  57777777653 45666653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.16  E-value=0.12  Score=46.09  Aligned_cols=222  Identities=14%  Similarity=0.107  Sum_probs=116.8

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC--ceeecCCCc----
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN--RWTVMNKMI----  193 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~--~W~~~~~~~----  193 (402)
                      .++++|+.+.+........    .. ..-..+++..++.||+....       ...+.+||+..+  .-..+....    
T Consensus        70 ~i~~~d~~~g~~~~~~~~~----~~-~~p~gia~d~~g~l~v~d~~-------~~~v~~~~~~g~~~~~~~~~~~~~~g~  137 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKN----LF-YLPHGLSIDTDGNYWVTDVA-------LHQVFKLDPHSKEGPLLILGRSMQPGS  137 (329)
T ss_dssp             CEEEECTTTCCEEEEECTT----TC-SSEEEEEECTTSCEEEEETT-------TTEEEEECTTCSSCCSEEESBTTBCCC
T ss_pred             cEEEEECCCCeEEeccCCC----cc-CCceEEEECCCCCEEEEECC-------CCEEEEEeCCCCeEEEEEecccCCCCC
Confidence            5888999877654322111    00 11233444357789988653       347999998765  222222110    


Q ss_pred             --cc-ccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCC-------CCCCcceeEEEE--C-CEEEE
Q 040145          194 --TA-RSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM-------GTNMASYDAAVL--D-GKLLV  258 (402)
Q Consensus       194 --~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-------~~~~~~~~~~~~--~-g~ly~  258 (402)
                        .. .....+++.  ++.||+..+..     ...+.+||+....-..+...       +........+.+  + +.||+
T Consensus       138 ~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v  212 (329)
T 3fvz_A          138 DQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV  212 (329)
T ss_dssp             STTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE
T ss_pred             CccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE
Confidence              11 122344444  57999997521     46789999654433333211       111122333333  4 89999


Q ss_pred             EcccccCCccCCcEEEEeCCCCCeeec-cccccCCCceeEEEECCEEEEEecc------CCcEEEEEeCCCCceeecCCC
Q 040145          259 TEGWLWPFFVSPRGQVYDPSTDNWESM-AVGLREGWTGSSVVVYEHLFVVSEL------ERMKLKVYDPSTDSWETIEGP  331 (402)
Q Consensus       259 ~gG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~l~~~gg~------~~~~~~~yd~~~~~W~~~~~~  331 (402)
                      ....      ...+.+||+.+++.... ............+...+.+|...|.      ....+.++|..+.+....-. 
T Consensus       213 ~d~~------~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~-  285 (329)
T 3fvz_A          213 ADRE------NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK-  285 (329)
T ss_dssp             EETT------TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC-
T ss_pred             EECC------CCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc-
Confidence            8654      24799999987765432 2111111111122333555555443      24579999988776554421 


Q ss_pred             CCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEeccc
Q 040145          332 PLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       332 ~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      +.+.......++++ .+|.|||....++.    |..+++
T Consensus       286 ~~~~~~~~p~~ia~~~dG~lyvad~~~~~----I~~~~~  320 (329)
T 3fvz_A          286 PVRKHFDMPHDIVASEDGTVYIGDAHTNT----VWKFTL  320 (329)
T ss_dssp             CSSSCCSSEEEEEECTTSEEEEEESSSCC----EEEEEE
T ss_pred             CCCCccCCeeEEEECCCCCEEEEECCCCE----EEEEeC
Confidence            11222233445554 46789998876553    666654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.14  E-value=0.081  Score=53.57  Aligned_cols=204  Identities=8%  Similarity=0.045  Sum_probs=111.7

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc---c-c
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI---T-A  195 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~---~-~  195 (402)
                      -+++||+.++++..+.......    ....+.....++.|++-..         ..+++||+.+++|+......   . .
T Consensus       428 Gl~~~~~~~~~~~~~~~~~~~~----~~v~~i~~d~~g~lwigt~---------~Gl~~~~~~~~~~~~~~~~~~~~~~~  494 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELEKNEL----LDVRVFYEDKNKKIWIGTH---------AGVFVIDLASKKVIHHYDTSNSQLLE  494 (781)
T ss_dssp             EEEEECSSSCEEEECCSTTTCC----CCEEEEEECTTSEEEEEET---------TEEEEEESSSSSCCEEECTTTSSCSC
T ss_pred             CEEEEcCCCCcEEEeccCCCCC----CeEEEEEECCCCCEEEEEC---------CceEEEeCCCCeEEecccCccccccc
Confidence            3678888888887765321010    2223333334678887532         26999999999887654322   1 1


Q ss_pred             ccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCC-CCcceeEEEE--CCEEEEEcccccCCccCCc
Q 040145          196 RSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGT-NMASYDAAVL--DGKLLVTEGWLWPFFVSPR  271 (402)
Q Consensus       196 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~  271 (402)
                      ....++.. .++.|++...       ...+.+||+.+++++....... +.....+...  +|.|++...        ..
T Consensus       495 ~~i~~i~~d~~g~lWigt~-------~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~--------~G  559 (781)
T 3v9f_A          495 NFVRSIAQDSEGRFWIGTF-------GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG--------EG  559 (781)
T ss_dssp             SCEEEEEECTTCCEEEEES-------SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET--------TE
T ss_pred             ceeEEEEEcCCCCEEEEEc-------CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC--------CC
Confidence            11112222 2567776532       1357899999998887643111 1111222222  577777432        24


Q ss_pred             E-EEEeCCCCCeeeccc--cccCCCceeEEE-ECCEEEEEeccCCcEEEEEeCCCCceeecCCC-CCCccccCCeEEEE-
Q 040145          272 G-QVYDPSTDNWESMAV--GLREGWTGSSVV-VYEHLFVVSELERMKLKVYDPSTDSWETIEGP-PLPEQICKPFAVNA-  345 (402)
Q Consensus       272 ~-~~yd~~~~~W~~~~~--~~~~~~~~~~~~-~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~-~~p~~~~~~~~~~~-  345 (402)
                      + .+||+.++++.....  .++.......+. -+|.|++.+.   ..+.+||+++.++...... .++...-...+++. 
T Consensus       560 lv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~---~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~  636 (781)
T 3v9f_A          560 LVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTN---TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKD  636 (781)
T ss_dssp             EEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECS---SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEEC
T ss_pred             ceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcC---CceEEEECCCCceEEecccCCccccccccCceEEC
Confidence            6 899999988876543  233333322222 3678887543   3589999999887765421 23321111123333 


Q ss_pred             eCCEEEEEe
Q 040145          346 CDCRVYVVG  354 (402)
Q Consensus       346 ~~~~i~v~G  354 (402)
                      .+|+||+-|
T Consensus       637 ~~G~l~~g~  645 (781)
T 3v9f_A          637 HNGLIYFGS  645 (781)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCEEEEEC
Confidence            367776644

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.13  E-value=0.029  Score=50.90  Aligned_cols=207  Identities=9%  Similarity=-0.032  Sum_probs=98.4

Q ss_pred             EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc-ce
Q 040145          121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS-FF  199 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~-~~  199 (402)
                      +.+||..+++-..........  ......++++..++..++.|+.+       ..+.+||..+++-...  +..... ..
T Consensus       117 v~lWd~~~~~~~~~~~~~~~~--h~~~V~~v~~spdg~~l~sgs~d-------g~v~iwd~~~~~~~~~--~~~h~~~v~  185 (357)
T 4g56_B          117 VELWEILEKESLLVNKFAKYE--HDDIVKTLSVFSDGTQAVSGGKD-------FSVKVWDLSQKAVLKS--YNAHSSEVN  185 (357)
T ss_dssp             EEEC--------CCCCEEECC--CSSCEEEEEECSSSSEEEEEETT-------SCEEEEETTTTEEEEE--ECCCSSCEE
T ss_pred             EEEeeccccceeEEEeeccCC--CCCCEEEEEECCCCCEEEEEeCC-------CeEEEEECCCCcEEEE--EcCCCCCEE
Confidence            667777665432221111000  00123344554567777887763       2688999988753321  111111 12


Q ss_pred             EEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEE
Q 040145          200 ASGVI-G-GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQV  274 (402)
Q Consensus       200 ~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~  274 (402)
                      +++.. + +.+++.++.      -..+.+||..+.+-..............++.+   ++.+++.|+.+      ..+..
T Consensus       186 ~v~~s~~~~~~~~s~~~------dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d------~~i~~  253 (357)
T 4g56_B          186 CVAACPGKDTIFLSCGE------DGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET------GNVSL  253 (357)
T ss_dssp             EEEECTTCSSCEEEEET------TSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS------SCEEE
T ss_pred             EEEEccCCCceeeeecc------CCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc------cceeE
Confidence            22332 2 346666665      34578899887653222222222222233333   35677777643      36889


Q ss_pred             EeCCCCCeeeccccccCCCce-eEEEE--CC-EEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE--eCC
Q 040145          275 YDPSTDNWESMAVGLREGWTG-SSVVV--YE-HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA--CDC  348 (402)
Q Consensus       275 yd~~~~~W~~~~~~~~~~~~~-~~~~~--~~-~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~  348 (402)
                      ||+.+.+-  +.. ....... ..+.+  ++ ++++.|+. ...+.+||..+.+-....    ... ..-.+++.  .++
T Consensus       254 wd~~~~~~--~~~-~~~~~~~v~~l~~sp~~~~~lasgs~-D~~i~iwd~~~~~~~~~~----~H~-~~V~~vafsP~d~  324 (357)
T 4g56_B          254 VNIKNPDS--AQT-SAVHSQNITGLAYSYHSSPFLASISE-DCTVAVLDADFSEVFRDL----SHR-DFVTGVAWSPLDH  324 (357)
T ss_dssp             EESSCGGG--CEE-ECCCSSCEEEEEECSSSSCCEEEEET-TSCEEEECTTSCEEEEEC----CCS-SCEEEEEECSSST
T ss_pred             EECCCCcE--eEE-EeccceeEEEEEEcCCCCCEEEEEeC-CCEEEEEECCCCcEeEEC----CCC-CCEEEEEEeCCCC
Confidence            99876542  111 1111111 12233  44 45555554 457999999877544332    111 11223333  367


Q ss_pred             EEEEEecCcee
Q 040145          349 RVYVVGRNLHV  359 (402)
Q Consensus       349 ~i~v~GG~~~~  359 (402)
                      ++++.||.++.
T Consensus       325 ~~l~s~s~Dg~  335 (357)
T 4g56_B          325 SKFTTVGWDHK  335 (357)
T ss_dssp             TEEEEEETTSC
T ss_pred             CEEEEEcCCCe
Confidence            88888887655

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.10  E-value=0.047  Score=49.71  Aligned_cols=213  Identities=12%  Similarity=-0.008  Sum_probs=101.6

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      .++++..+|++.++++...     -..+.+||+.+.+-.....  ....-..++.. ++++++.++       ...+.++
T Consensus       137 ~~v~fSpDg~~la~as~~~-----d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s-------~~~~~~~  202 (365)
T 4h5i_A          137 KLVYISREGTVAAIASSKV-----PAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYIT-------GSSLEVI  202 (365)
T ss_dssp             EEEEECTTSSCEEEEESCS-----SCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEEC-------SSCEEEE
T ss_pred             EEEEEcCCCCEEEEEECCC-----CCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEecc-------ceeEEEE
Confidence            4555655676655443211     2378999999886543221  11112233333 556666654       2346777


Q ss_pred             cCCCCcEEEcCCCCCCCcceeEE--EECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc-cccCCCcee-EEE--EC
Q 040145          228 DPVKGNWRTIASMGTNMASYDAA--VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV-GLREGWTGS-SVV--VY  301 (402)
Q Consensus       228 d~~t~~W~~~~~~~~~~~~~~~~--~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~-~~~--~~  301 (402)
                      +..++.-...............+  .-++..++.++..+...  ..+..+|........... ......... ++.  -+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd  280 (365)
T 4h5i_A          203 STVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG--IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK  280 (365)
T ss_dssp             ETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC--EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT
T ss_pred             EeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce--eEEeecccccceecceeeeeecCCCCCeEeEEECCC
Confidence            77776543322222222222222  33788888776543211  145667766555443321 111111111 222  27


Q ss_pred             CEEEEEeccCCcEEEEEeCCCCceee-cCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeE
Q 040145          302 EHLFVVSELERMKLKVYDPSTDSWET-IEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQW  380 (402)
Q Consensus       302 ~~l~~~gg~~~~~~~~yd~~~~~W~~-~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W  380 (402)
                      |++++.|+. ...|.+||..+.+-.. +.   -.........+...++++++.|+.++.    |-++|.-++.-.....|
T Consensus       281 g~~lasgs~-D~~V~iwd~~~~~~~~~~~---~gH~~~V~~v~fSpdg~~laS~S~D~t----vrvw~ip~~~~~~~s~~  352 (365)
T 4h5i_A          281 GELAVLASN-DNSIALVKLKDLSMSKIFK---QAHSFAITEVTISPDSTYVASVSAANT----IHIIKLPLNYANYTSMK  352 (365)
T ss_dssp             SCEEEEEET-TSCEEEEETTTTEEEEEET---TSSSSCEEEEEECTTSCEEEEEETTSE----EEEEECCTTTTC-----
T ss_pred             CCceEEEcC-CCEEEEEECCCCcEEEEec---CcccCCEEEEEECCCCCEEEEEeCCCe----EEEEEcCCCCcCccCcc
Confidence            888888776 4579999998764222 11   111101111222458888888887665    44444334444556666


Q ss_pred             EEEeC
Q 040145          381 QVVDA  385 (402)
Q Consensus       381 ~~~~~  385 (402)
                      +++.-
T Consensus       353 ~~l~k  357 (365)
T 4h5i_A          353 QKISK  357 (365)
T ss_dssp             -----
T ss_pred             cccee
Confidence            66543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.08  E-value=0.075  Score=48.89  Aligned_cols=150  Identities=7%  Similarity=0.033  Sum_probs=77.6

Q ss_pred             EEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145          152 SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPV  230 (402)
Q Consensus       152 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~  230 (402)
                      ....++.+++.|+.+       ..+.+||..++.-...-. .....-.+++.. ++++++.|+.      ...+.+||..
T Consensus       104 ~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~------d~~i~iwd~~  169 (420)
T 3vl1_A          104 TAKLQMRRFILGTTE-------GDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQ------DMQLKIWSVK  169 (420)
T ss_dssp             EECSSSCEEEEEETT-------SCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEET------TSEEEEEETT
T ss_pred             EEecCCCEEEEEECC-------CCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeC------CCeEEEEeCC
Confidence            444577788887752       268999988775433211 111112233332 4566666665      4568899988


Q ss_pred             CCcEEEcCCCCCCCcceeEE-EE-CCEEEEEcccccCCccCCcEEEEeCCCCCeee-ccccc-cCCCceeEE--------
Q 040145          231 KGNWRTIASMGTNMASYDAA-VL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVGL-REGWTGSSV--------  298 (402)
Q Consensus       231 t~~W~~~~~~~~~~~~~~~~-~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~-~~~~~~~~~--------  298 (402)
                      +..-.  ..+.........+ .. ++..++.|+.+      ..+..||+.+++-.. +.... +.......+        
T Consensus       170 ~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  241 (420)
T 3vl1_A          170 DGSNP--RTLIGHRATVTDIAIIDRGRNVLSASLD------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ  241 (420)
T ss_dssp             TCCCC--EEEECCSSCEEEEEEETTTTEEEEEETT------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred             CCcCc--eEEcCCCCcEEEEEEcCCCCEEEEEcCC------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce
Confidence            65421  1111111112222 22 66666666653      368889988764221 11100 000000011        


Q ss_pred             --------------EECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          299 --------------VVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       299 --------------~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                                    .-++++++.|+. ...+.+||..+..
T Consensus       242 ~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~  280 (420)
T 3vl1_A          242 LHEISTSKKNNLEFGTYGKYVIAGHV-SGVITVHNVFSKE  280 (420)
T ss_dssp             CGGGCCCCCCTTCSSCTTEEEEEEET-TSCEEEEETTTCC
T ss_pred             eeecccCcccceEEcCCCCEEEEEcC-CCeEEEEECCCCc
Confidence                          125667777665 5579999998764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.08  E-value=0.12  Score=45.93  Aligned_cols=240  Identities=12%  Similarity=0.043  Sum_probs=120.3

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+|+.+.    ....+++||+.+++...+....  .    ......++..++.+|+......   .....+++||+.+
T Consensus        55 ~g~l~~~~~----~~~~i~~~d~~~~~~~~~~~~~--~----~~~~~i~~~~dg~l~v~~~~~~---~~~~~i~~~d~~~  121 (333)
T 2dg1_A           55 QGQLFLLDV----FEGNIFKINPETKEIKRPFVSH--K----ANPAAIKIHKDGRLFVCYLGDF---KSTGGIFAATENG  121 (333)
T ss_dssp             TSCEEEEET----TTCEEEEECTTTCCEEEEEECS--S----SSEEEEEECTTSCEEEEECTTS---SSCCEEEEECTTS
T ss_pred             CCCEEEEEC----CCCEEEEEeCCCCcEEEEeeCC--C----CCcceEEECCCCcEEEEeCCCC---CCCceEEEEeCCC
Confidence            556777653    2235889999888776543111  0    1223444445778888754321   1124799999998


Q ss_pred             Cceee-cCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CC-EEEE
Q 040145          184 NRWTV-MNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DG-KLLV  258 (402)
Q Consensus       184 ~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g-~ly~  258 (402)
                      +..+. +...........++. -++++|+.............+++||+.+++...+..-   ........+  +| .||+
T Consensus       122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg~~l~v  198 (333)
T 2dg1_A          122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKVLWV  198 (333)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSEEEE
T ss_pred             CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC---CCcccceEECCCCCEEEE
Confidence            87653 222211122222233 2567887654221111145789999987766554210   111222223  55 4777


Q ss_pred             EcccccCCccCCcEEEEeCCCC--Ceeeccc----cccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCC
Q 040145          259 TEGWLWPFFVSPRGQVYDPSTD--NWESMAV----GLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEG  330 (402)
Q Consensus       259 ~gG~~~~~~~~~~~~~yd~~~~--~W~~~~~----~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~  330 (402)
                      ....      ...+++||+.++  ....+..    ..........+.+  +|++|+.... ...+.+||++...-..+. 
T Consensus       199 ~~~~------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-~~~v~~~d~~g~~~~~~~-  270 (333)
T 2dg1_A          199 TETT------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-QGRVLVFNKRGYPIGQIL-  270 (333)
T ss_dssp             EEGG------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-TTEEEEECTTSCEEEEEE-
T ss_pred             EeCC------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC-CCEEEEECCCCCEEEEEE-
Confidence            6432      236889998542  3332210    0111111112233  6788876532 457999999655444443 


Q ss_pred             CCCCccc----cCCeEEEE-eC-CEEEEEecCce-eeeEEEEeccc
Q 040145          331 PPLPEQI----CKPFAVNA-CD-CRVYVVGRNLH-VAVGHITRLST  369 (402)
Q Consensus       331 ~~~p~~~----~~~~~~~~-~~-~~i~v~GG~~~-~~~~~v~~~~~  369 (402)
                        .+...    ....+++. .+ +.||+.+.... ...+.++.++.
T Consensus       271 --~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          271 --IPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             --CTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             --cCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence              22110    01223333 34 47877654322 22355777664

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.08  E-value=0.014  Score=53.13  Aligned_cols=225  Identities=11%  Similarity=0.055  Sum_probs=104.9

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+++.++.+    ..+.+||..+..|..+..+....    ....++.+..++.+++.|+.+       ..+.+||..+
T Consensus        22 ~g~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~h~----~~v~~~~~s~~~~~l~s~s~d-------~~v~vwd~~~   86 (377)
T 3dwl_C           22 QRTEFVTTTAT----NQVELYEQDGNGWKHARTFSDHD----KIVTCVDWAPKSNRIVTCSQD-------RNAYVYEKRP   86 (377)
T ss_dssp             SSSEEECCCSS----SCBCEEEEETTEEEECCCBCCCS----SCEEEEEECTTTCCEEEEETT-------SSEEEC----
T ss_pred             CCCEEEEecCC----CEEEEEEccCCceEEEEEEecCC----ceEEEEEEeCCCCEEEEEeCC-------CeEEEEEcCC
Confidence            34455555332    23678888888777766554221    233445554567777777752       2689999988


Q ss_pred             Cc-eeecCCCcccccc-eEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcCCCCC-CCcceeEEEE--CCEE
Q 040145          184 NR-WTVMNKMITARSF-FASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIASMGT-NMASYDAAVL--DGKL  256 (402)
Q Consensus       184 ~~-W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~-~~~~~~~~~~--~g~l  256 (402)
                      +. |.....+...... ..+... +++.++.|+.      ...+.+||..+.. |.....+.. .......+.+  ++++
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  160 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG------ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL  160 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEES------SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEec------CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence            76 5443322222112 222222 4566666665      3457888888764 333322322 1122222333  6677


Q ss_pred             EEEcccccCCccCCcEEEEeCCCCCeeecc---------------ccccCCCceeEEEE--CCEEEEEeccCCcEEEEEe
Q 040145          257 LVTEGWLWPFFVSPRGQVYDPSTDNWESMA---------------VGLREGWTGSSVVV--YEHLFVVSELERMKLKVYD  319 (402)
Q Consensus       257 y~~gG~~~~~~~~~~~~~yd~~~~~W~~~~---------------~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd  319 (402)
                      ++.|+.+      ..+..||+.+.......               ........-..+.+  ++++++.|+. ...+.+||
T Consensus       161 l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iwd  233 (377)
T 3dwl_C          161 LAAGCAD------RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH-DSSVTIAY  233 (377)
T ss_dssp             EEEEESS------SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET-TTEEC-CE
T ss_pred             EEEEeCC------CEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC-CCcEEEEE
Confidence            7777653      36788887544322111               00111111112233  6676666665 45788888


Q ss_pred             CCCCce--eecCCCCCCccccCCeE-EEEeCCEEEEEecCce
Q 040145          320 PSTDSW--ETIEGPPLPEQICKPFA-VNACDCRVYVVGRNLH  358 (402)
Q Consensus       320 ~~~~~W--~~~~~~~~p~~~~~~~~-~~~~~~~i~v~GG~~~  358 (402)
                      ..+.+-  ..+.  .+........+ ....++++++.|+.+.
T Consensus       234 ~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~  273 (377)
T 3dwl_C          234 PSAPEQPPRALI--TVKLSQLPLRSLLWANESAIVAAGYNYS  273 (377)
T ss_dssp             ECSTTSCEEECC--CEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred             CCCCCCcceeeE--eecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence            876542  1122  11111011122 2345788777776433

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.06  E-value=0.12  Score=45.20  Aligned_cols=186  Identities=10%  Similarity=0.085  Sum_probs=87.6

Q ss_pred             CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce-EEEEEC---CEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145          157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF-ASGVIG---GMIYVAGGSSADLFELDSAEVLDPVKG  232 (402)
Q Consensus       157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~-~~~~~~---~~iyv~GG~~~~~~~~~~~~~yd~~t~  232 (402)
                      +.+++.|+.+       ..+.+||..++.|..+..+....... +++...   +.+++.|+.      -..+.+||..+.
T Consensus        67 g~~l~s~s~D-------~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~------d~~v~~wd~~~~  133 (297)
T 2pm7_B           67 GTILASCSYD-------GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS------DGKVSVVEFKEN  133 (297)
T ss_dssp             CSEEEEEETT-------TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET------TSEEEEEEBCSS
T ss_pred             CCEEEEEcCC-------CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC------CCcEEEEEecCC
Confidence            5677777763       27899999988776543322111112 222222   456666665      345777877654


Q ss_pred             c-EEEcCCCCCCCcceeEEEE---------------CCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCc
Q 040145          233 N-WRTIASMGTNMASYDAAVL---------------DGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWT  294 (402)
Q Consensus       233 ~-W~~~~~~~~~~~~~~~~~~---------------~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~  294 (402)
                      . +... .+.........+..               ++++++.|+.+      ..+..||..++.  |..+.. +.....
T Consensus       134 ~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D------~~v~lwd~~~~~~~~~~~~~-l~~H~~  205 (297)
T 2pm7_B          134 GTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLEST-LEGHSD  205 (297)
T ss_dssp             SCBCCE-EEECCSSCEEEEEECCCC------------CCEEEEEETT------SCEEEEEEETTTTEEEEEEE-ECCCSS
T ss_pred             Cceeee-eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCC------CcEEEEEEcCCCceEEEEEE-ecCCCC
Confidence            2 2100 00000001111111               24567777653      357778876543  443322 111111


Q ss_pred             e-eEEEE--C---CEEEEEeccCCcEEEEEeCCC--CceeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEE
Q 040145          295 G-SSVVV--Y---EHLFVVSELERMKLKVYDPST--DSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHIT  365 (402)
Q Consensus       295 ~-~~~~~--~---~~l~~~gg~~~~~~~~yd~~~--~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~  365 (402)
                      . ..+.+  +   +.+++.|+. ...+.+||..+  ..|..... ..........++. ..++++++.||.++.  ..+|
T Consensus       206 ~V~~v~~sp~~~~~~~las~s~-D~~v~iWd~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~las~~~D~~--v~lw  281 (297)
T 2pm7_B          206 WVRDVAWSPTVLLRSYMASVSQ-DRTCIIWTQDNEQGPWKKTLL-KEEKFPDVLWRASWSLSGNVLALSGGDNK--VTLW  281 (297)
T ss_dssp             CEEEEEECCCCSSSEEEEEEET-TSCEEEEEESSTTSCCEEEES-SSSCCSSCEEEEEECSSSCCEEEEETTSC--EEEE
T ss_pred             ceEEEEECCCCCCceEEEEEEC-CCcEEEEEeCCCCCccceeee-ecccCCCcEEEEEECCCCCEEEEEcCCCc--EEEE
Confidence            1 12333  2   366666665 44677777755  34543210 0011001112222 357788888876654  2344


Q ss_pred             ec
Q 040145          366 RL  367 (402)
Q Consensus       366 ~~  367 (402)
                      ..
T Consensus       282 ~~  283 (297)
T 2pm7_B          282 KE  283 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.04  E-value=0.19  Score=46.10  Aligned_cols=219  Identities=9%  Similarity=-0.017  Sum_probs=108.9

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+++.++.+.    .+.+||..+..-...-...      .....++....++.+++.|+.+       ..+.+||..+
T Consensus       108 ~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l~s~s~d-------~~i~iwd~~~  170 (420)
T 3vl1_A          108 QMRRFILGTTEG----DIKVLDSNFNLQREIDQAH------VSEITKLKFFPSGEALISSSQD-------MQLKIWSVKD  170 (420)
T ss_dssp             SSCEEEEEETTS----CEEEECTTSCEEEEETTSS------SSCEEEEEECTTSSEEEEEETT-------SEEEEEETTT
T ss_pred             CCCEEEEEECCC----CEEEEeCCCcceeeecccc------cCccEEEEECCCCCEEEEEeCC-------CeEEEEeCCC
Confidence            344555554332    3778888766544331111      1223444444466677777652       2799999987


Q ss_pred             CceeecCCCccc-ccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEE-cCCCCCCCcceeEE----------
Q 040145          184 NRWTVMNKMITA-RSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRT-IASMGTNMASYDAA----------  250 (402)
Q Consensus       184 ~~W~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~----------  250 (402)
                      ++-..  .+... ..-.+++.. ++..++.|+.      -..+.+||..+++-.. +.............          
T Consensus       171 ~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  242 (420)
T 3vl1_A          171 GSNPR--TLIGHRATVTDIAIIDRGRNVLSASL------DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL  242 (420)
T ss_dssp             CCCCE--EEECCSSCEEEEEEETTTTEEEEEET------TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC
T ss_pred             CcCce--EEcCCCCcEEEEEEcCCCCEEEEEcC------CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee
Confidence            64211  11111 111233333 4555666665      3458889988775322 21111111111111          


Q ss_pred             -------------EECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCE-EEEEeccCCcE
Q 040145          251 -------------VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEH-LFVVSELERMK  314 (402)
Q Consensus       251 -------------~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~-l~~~gg~~~~~  314 (402)
                                   .-++++++.|+.+      ..+..||+.+.+-...-. ......-..+.+  ++. +++.|+. ...
T Consensus       243 ~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~-dg~  314 (420)
T 3vl1_A          243 HEISTSKKNNLEFGTYGKYVIAGHVS------GVITVHNVFSKEQTIQLP-SKFTCSCNSLTVDGNNANYIYAGYE-NGM  314 (420)
T ss_dssp             GGGCCCCCCTTCSSCTTEEEEEEETT------SCEEEEETTTCCEEEEEC-CTTSSCEEEEEECSSCTTEEEEEET-TSE
T ss_pred             eecccCcccceEEcCCCCEEEEEcCC------CeEEEEECCCCceeEEcc-cccCCCceeEEEeCCCCCEEEEEeC-CCe
Confidence                         1256777776643      368999998765221111 111111112233  444 6666665 568


Q ss_pred             EEEEeCCCCce--eecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145          315 LKVYDPSTDSW--ETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV  359 (402)
Q Consensus       315 ~~~yd~~~~~W--~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~  359 (402)
                      +.+||..+..-  ..+.   ... .....++...++++++.|+.+..
T Consensus       315 i~vwd~~~~~~~~~~~~---~~~-~~~v~~~~~~~~~~l~s~~~d~~  357 (420)
T 3vl1_A          315 LAQWDLRSPECPVGEFL---INE-GTPINNVYFAAGALFVSSGFDTS  357 (420)
T ss_dssp             EEEEETTCTTSCSEEEE---EST-TSCEEEEEEETTEEEEEETTTEE
T ss_pred             EEEEEcCCCcCchhhhh---ccC-CCCceEEEeCCCCEEEEecCCcc
Confidence            99999987532  2221   000 01223445568888888886644

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.03  E-value=0.14  Score=44.61  Aligned_cols=224  Identities=11%  Similarity=0.070  Sum_probs=116.4

Q ss_pred             CeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC
Q 040145          105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN  184 (402)
Q Consensus       105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~  184 (402)
                      ..+|+.+..    ...++.||+.+. ...+....       ..-...++..++.+|+....       ...+.+||+.++
T Consensus        40 ~~l~~~~~~----~~~i~~~~~~~~-~~~~~~~~-------~~~~~l~~~~dg~l~v~~~~-------~~~i~~~d~~~g  100 (296)
T 3e5z_A           40 SAVIFSDVR----QNRTWAWSDDGQ-LSPEMHPS-------HHQNGHCLNKQGHLIACSHG-------LRRLERQREPGG  100 (296)
T ss_dssp             TEEEEEEGG----GTEEEEEETTSC-EEEEESSC-------SSEEEEEECTTCCEEEEETT-------TTEEEEECSTTC
T ss_pred             CEEEEEeCC----CCEEEEEECCCC-eEEEECCC-------CCcceeeECCCCcEEEEecC-------CCeEEEEcCCCC
Confidence            346666532    235889999887 55443211       11233444457788876532       237999999998


Q ss_pred             ceeecCCCcc----cccceEEEEECCEEEEE----cCCC-------CCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE
Q 040145          185 RWTVMNKMIT----ARSFFASGVIGGMIYVA----GGSS-------ADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA  249 (402)
Q Consensus       185 ~W~~~~~~~~----~r~~~~~~~~~~~iyv~----GG~~-------~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~  249 (402)
                      +.+.+.....    .+....+..-++++|+.    |...       ........++.||+. ++.+.+...   ......
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~---~~~~~g  176 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD---RVKPNG  176 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC---CSSEEE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC---CCCCcc
Confidence            8766532211    11112222236788886    4311       011113478999987 555443211   111222


Q ss_pred             EEE--CCEEEEEcccccCCccCCcEEEEeCC-CCCe-eeccc-cccCCC-ceeEEEECCEEEEEeccCCcEEEEEeCCCC
Q 040145          250 AVL--DGKLLVTEGWLWPFFVSPRGQVYDPS-TDNW-ESMAV-GLREGW-TGSSVVVYEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       250 ~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~-~~~W-~~~~~-~~~~~~-~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      ..+  +|++++....      ...+++||+. +++. ..... ...... .+.+.--+|+||+..   ...+.+||++..
T Consensus       177 i~~s~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~~v~~~~~~g~  247 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTG------DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GDGVHVLTPDGD  247 (296)
T ss_dssp             EEECTTSCEEEEETT------TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TTEEEEECTTSC
T ss_pred             EEECCCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CCeEEEECCCCC
Confidence            333  6776644332      2478899986 5555 21111 011111 122233478888876   457999999866


Q ss_pred             ceeecCCCCCCccccCCeEEEE--eCC-EEEEEecCceeeeEEEEecccccc
Q 040145          324 SWETIEGPPLPEQICKPFAVNA--CDC-RVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       324 ~W~~~~~~~~p~~~~~~~~~~~--~~~-~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                      ....+.   .+..   ..+++.  .++ .|||.+..      .++.+++..+
T Consensus       248 ~~~~~~---~~~~---~~~~~f~~~d~~~L~v~t~~------~l~~~~~~~~  287 (296)
T 3e5z_A          248 ELGRVL---TPQT---TSNLCFGGPEGRTLYMTVST------EFWSIETNVR  287 (296)
T ss_dssp             EEEEEE---CSSC---CCEEEEESTTSCEEEEEETT------EEEEEECSCC
T ss_pred             EEEEEE---CCCC---ceeEEEECCCCCEEEEEcCC------eEEEEEcccc
Confidence            555543   3321   223333  233 57776542      4778876544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.03  E-value=0.065  Score=47.53  Aligned_cols=195  Identities=6%  Similarity=-0.083  Sum_probs=93.5

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcE-EeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCW-HTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W-~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      +..+|+....    ...++.+|+.+.+. .........     ...+.+....+..|| .+...    .....+.+||..
T Consensus        51 g~~l~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~-~~~~~----~~~~~i~v~d~~  116 (331)
T 3u4y_A           51 CSNVVVTSDF----CQTLVQIETQLEPPKVVAIQEGQS-----SMADVDITPDDQFAV-TVTGL----NHPFNMQSYSFL  116 (331)
T ss_dssp             SCEEEEEEST----TCEEEEEECSSSSCEEEEEEECSS-----CCCCEEECTTSSEEE-ECCCS----SSSCEEEEEETT
T ss_pred             CCEEEEEeCC----CCeEEEEECCCCceeEEecccCCC-----CccceEECCCCCEEE-EecCC----CCcccEEEEECC
Confidence            4456766532    23688999988764 221111111     111133332244566 43321    112379999999


Q ss_pred             CCceeecCCCcccccceEEEEE-CC-EEEEEcCCCCCCCCCCe-eEEEcCCCCc-EEEc--CCCCCCCcceeEEEE--CC
Q 040145          183 KNRWTVMNKMITARSFFASGVI-GG-MIYVAGGSSADLFELDS-AEVLDPVKGN-WRTI--ASMGTNMASYDAAVL--DG  254 (402)
Q Consensus       183 t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~-~~~yd~~t~~-W~~~--~~~~~~~~~~~~~~~--~g  254 (402)
                      +++....  ++.....+.++.. ++ .+|+.+..      ... +.+|+...+. -...  ..++.. .......+  +|
T Consensus       117 ~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~------~~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~spdg  187 (331)
T 3u4y_A          117 KNKFIST--IPIPYDAVGIAISPNGNGLILIDRS------SANTVRRFKIDADGVLFDTGQEFISGG-TRPFNITFTPDG  187 (331)
T ss_dssp             TTEEEEE--EECCTTEEEEEECTTSSCEEEEEET------TTTEEEEEEECTTCCEEEEEEEEECSS-SSEEEEEECTTS
T ss_pred             CCCeEEE--EECCCCccceEECCCCCEEEEEecC------CCceEEEEEECCCCcEeecCCccccCC-CCccceEECCCC
Confidence            8865442  2222222344443 33 57777653      234 6666655322 1110  011111 11222223  56


Q ss_pred             E-EEEEcccccCCccCCcEEEEeCCCCCe-eecccc-ccCCCceeEEEECCE-EEEEeccCCcEEEEEeCCCCceeec
Q 040145          255 K-LLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVG-LREGWTGSSVVVYEH-LFVVSELERMKLKVYDPSTDSWETI  328 (402)
Q Consensus       255 ~-ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~-~~~~~~~~~~~~~~~-l~~~gg~~~~~~~~yd~~~~~W~~~  328 (402)
                      + +|+.+..      ...+.+||+.+++. ..+... ....-......-+|+ +|+. ......+.+||+++.+.+.+
T Consensus       188 ~~l~v~~~~------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~i~~~d~~~~~~~~~  258 (331)
T 3u4y_A          188 NFAFVANLI------GNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL-TESTVDVFNFNQLSGTLSFV  258 (331)
T ss_dssp             SEEEEEETT------TTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE-CSSEEEEEEEETTTTEEEEE
T ss_pred             CEEEEEeCC------CCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE-EcCCCEEEEEECCCCceeee
Confidence            5 7776543      24789999988765 112110 111111122223566 5554 33456799999998876444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.02  E-value=0.088  Score=46.04  Aligned_cols=189  Identities=10%  Similarity=-0.012  Sum_probs=98.4

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNW  234 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  234 (402)
                      ++.||+++..       ...+++||+.++ .+.... +. ....+++. -++++|+....      ...+.+||+.+++.
T Consensus        39 g~~l~~~~~~-------~~~i~~~~~~~~-~~~~~~-~~-~~~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           39 RSAVIFSDVR-------QNRTWAWSDDGQ-LSPEMH-PS-HHQNGHCLNKQGHLIACSHG------LRRLERQREPGGEW  102 (296)
T ss_dssp             GTEEEEEEGG-------GTEEEEEETTSC-EEEEES-SC-SSEEEEEECTTCCEEEEETT------TTEEEEECSTTCCE
T ss_pred             CCEEEEEeCC-------CCEEEEEECCCC-eEEEEC-CC-CCcceeeECCCCcEEEEecC------CCeEEEEcCCCCcE
Confidence            3458887754       237999999988 554432 11 11223333 25778876542      35789999988887


Q ss_pred             EEcCCCCCC----CcceeEEEECCEEEEE----ccccc-------CCccCCcEEEEeCCCCCeeeccccccCCCceeEEE
Q 040145          235 RTIASMGTN----MASYDAAVLDGKLLVT----EGWLW-------PFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV  299 (402)
Q Consensus       235 ~~~~~~~~~----~~~~~~~~~~g~ly~~----gG~~~-------~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~  299 (402)
                      +.+......    +....++.-+|++|+.    |....       .......++.||+. ++...+......+ .+.+..
T Consensus       103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~-~gi~~s  180 (296)
T 3e5z_A          103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP-NGLAFL  180 (296)
T ss_dssp             EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE-EEEEEC
T ss_pred             EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC-ccEEEC
Confidence            765321111    1111122237889986    33110       00112378899987 5554443211111 111122


Q ss_pred             ECCEEEEEeccCCcEEEEEeCC-CCce-eecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEeccccc
Q 040145          300 VYEHLFVVSELERMKLKVYDPS-TDSW-ETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLSTSE  371 (402)
Q Consensus       300 ~~~~l~~~gg~~~~~~~~yd~~-~~~W-~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~~~  371 (402)
                      -+++++ +.+.....+++||.. +.+. ..........  ....+++ -.+|+|||..+      +.|..|++..
T Consensus       181 ~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~--~~p~~i~~d~~G~l~v~~~------~~v~~~~~~g  246 (296)
T 3e5z_A          181 PSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEP--GKTDGLRVDAGGLIWASAG------DGVHVLTPDG  246 (296)
T ss_dssp             TTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSS--SCCCSEEEBTTSCEEEEET------TEEEEECTTS
T ss_pred             CCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCC--CCCCeEEECCCCCEEEEcC------CeEEEECCCC
Confidence            367777 555546789999986 4444 1111000110  1112333 35788888772      2478888743

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.95  E-value=0.33  Score=49.10  Aligned_cols=219  Identities=11%  Similarity=0.060  Sum_probs=113.5

Q ss_pred             EEEeecCCCcEEeCCCCCC--CCCCCC-CCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCC---Ccc
Q 040145          121 WQVLDLTHYCWHTIPAMPC--KDKVCP-HGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK---MIT  194 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~--~~~~~~-~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~---~~~  194 (402)
                      +..|++.+..+......+.  ...... ....+.....++.|++-..        ..-+.+||+.+++++....   ++.
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~--------~~Gl~~~~~~~~~~~~~~~~~~~~~  406 (781)
T 3v9f_A          335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTD--------GGGINVFENGKRVAIYNKENRELLS  406 (781)
T ss_dssp             EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEB--------SSCEEEEETTEEEEECC-----CCC
T ss_pred             EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeC--------CCcEEEEECCCCeEEEccCCCCCCC
Confidence            6678888777665432110  000001 1123333323467876431        1148899998887766421   111


Q ss_pred             cccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCc
Q 040145          195 ARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPR  271 (402)
Q Consensus       195 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~  271 (402)
                       ..-.++..- ++.|++ |..      ...+.+||+.+++++.............+...  +|.|++...        ..
T Consensus       407 -~~v~~i~~d~~g~lWi-gt~------~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--------~G  470 (781)
T 3v9f_A          407 -NSVLCSLKDSEGNLWF-GTY------LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--------AG  470 (781)
T ss_dssp             -SBEEEEEECTTSCEEE-EET------TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--------TE
T ss_pred             -cceEEEEECCCCCEEE-Eec------cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--------Cc
Confidence             111222222 567776 332      24689999999999877532111112222222  577777432        36


Q ss_pred             EEEEeCCCCCeeeccccc----cCCCceeEE-EECCEEEEEeccCCcEEEEEeCCCCceeecCCC-CCCccccCCeEEEE
Q 040145          272 GQVYDPSTDNWESMAVGL----REGWTGSSV-VVYEHLFVVSELERMKLKVYDPSTDSWETIEGP-PLPEQICKPFAVNA  345 (402)
Q Consensus       272 ~~~yd~~~~~W~~~~~~~----~~~~~~~~~-~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~-~~p~~~~~~~~~~~  345 (402)
                      +.+||+.+++|.......    ........+ --+|.|++.. . ...+.+||+++++++..... .++.  ....+++.
T Consensus       471 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~~Gl~~~~~~~~~~~~~~~~~~l~~--~~i~~i~~  546 (781)
T 3v9f_A          471 VFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-F-GGGVGIYTPDMQLVRKFNQYEGFCS--NTINQIYR  546 (781)
T ss_dssp             EEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-S-SSCEEEECTTCCEEEEECTTTTCSC--SCEEEEEE
T ss_pred             eEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-c-CCCEEEEeCCCCeEEEccCCCCCCC--CeeEEEEE
Confidence            899999999887764311    111111111 2267777643 2 23589999999988876521 1221  11123332


Q ss_pred             -eCCEEEEEecCceeeeEEEEecccccc
Q 040145          346 -CDCRVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       346 -~~~~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                       .+|.|++... .    +-+..||+..+
T Consensus       547 d~~g~lWi~T~-~----Glv~~~d~~~~  569 (781)
T 3v9f_A          547 SSKGQMWLATG-E----GLVCFPSARNF  569 (781)
T ss_dssp             CTTSCEEEEET-T----EEEEESCTTTC
T ss_pred             CCCCCEEEEEC-C----CceEEECCCCC
Confidence             4677877653 1    11377776554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.95  E-value=0.14  Score=47.38  Aligned_cols=133  Identities=11%  Similarity=0.070  Sum_probs=69.0

Q ss_pred             EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-e
Q 040145          121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF-F  199 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~-~  199 (402)
                      +.+||..+.+....  +....    ..-.++.+..++.+++.|+.++       .+.+||..+..-..  .+...... .
T Consensus       132 i~vwd~~~~~~~~~--l~~h~----~~V~~v~~~~~~~~l~sgs~D~-------~i~iwd~~~~~~~~--~~~~h~~~V~  196 (410)
T 1vyh_C          132 IKVWDYETGDFERT--LKGHT----DSVQDISFDHSGKLLASCSADM-------TIKLWDFQGFECIR--TMHGHDHNVS  196 (410)
T ss_dssp             EEEEETTTCCCCEE--ECCCS----SCEEEEEECTTSSEEEEEETTS-------CCCEEETTSSCEEE--CCCCCSSCEE
T ss_pred             EEEEECCCCcEEEE--EeccC----CcEEEEEEcCCCCEEEEEeCCC-------eEEEEeCCCCceeE--EEcCCCCCEE
Confidence            67788776643221  11000    1233444545677888887632       57788987654222  22211111 2


Q ss_pred             EEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEe
Q 040145          200 ASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYD  276 (402)
Q Consensus       200 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd  276 (402)
                      ++... ++..++.|+.      -..+.+||..++.-...  +.........+..  ++.+++.|+.+      ..+.+||
T Consensus       197 ~v~~~p~~~~l~s~s~------D~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~D------~~v~vwd  262 (410)
T 1vyh_C          197 SVSIMPNGDHIVSASR------DKTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSND------QTVRVWV  262 (410)
T ss_dssp             EEEECSSSSEEEEEET------TSEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEETT------SCEEEEE
T ss_pred             EEEEeCCCCEEEEEeC------CCeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcCC------CeEEEEE
Confidence            22222 4556666765      45688999987753221  1111111222222  56777777653      3678888


Q ss_pred             CCCCCe
Q 040145          277 PSTDNW  282 (402)
Q Consensus       277 ~~~~~W  282 (402)
                      ..+..-
T Consensus       263 ~~~~~~  268 (410)
T 1vyh_C          263 VATKEC  268 (410)
T ss_dssp             TTTCCE
T ss_pred             CCCCce
Confidence            877653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.92  E-value=0.12  Score=44.95  Aligned_cols=188  Identities=12%  Similarity=0.069  Sum_probs=102.5

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKG  232 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~  232 (402)
                      .+.+++.|..       ...+.++|+.|++  |+.-..-  ....+.+.. -+++|++.+        ...+..||+ ++
T Consensus         4 ~~~~lv~~~~-------~~~v~~~d~~tG~~~w~~~~~~--~~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G   65 (276)
T 3no2_A            4 PQHLLVGGSG-------WNKIAIINKDTKEIVWEYPLEK--GWECNSVAATKAGEILFSY--------SKGAKMITR-DG   65 (276)
T ss_dssp             CCEEEEECTT-------CSEEEEEETTTTEEEEEEECCT--TCCCCEEEECTTSCEEEEC--------BSEEEEECT-TS
T ss_pred             CCcEEEeeCC-------CCEEEEEECCCCeEEEEeCCCc--cCCCcCeEECCCCCEEEeC--------CCCEEEECC-CC
Confidence            5678887764       3479999998885  7654321  112233333 477888832        356999999 55


Q ss_pred             c--EEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCC-Ceeec-ccccc---CCCceeEEEECCEE
Q 040145          233 N--WRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTD-NWESM-AVGLR---EGWTGSSVVVYEHL  304 (402)
Q Consensus       233 ~--W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~~~-~~~~~---~~~~~~~~~~~~~l  304 (402)
                      +  |+.-.+  .....+.+.. .+|.+++.....     ...++.+|+..+ .|+.- .....   ..........+|.+
T Consensus        66 ~~~W~~~~~--~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~  138 (276)
T 3no2_A           66 RELWNIAAP--AGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNY  138 (276)
T ss_dssp             CEEEEEECC--TTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCE
T ss_pred             CEEEEEcCC--CCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCE
Confidence            3  764431  1111222222 377777764421     126788887443 24421 11110   11112223456777


Q ss_pred             EEEeccCCcEEEEEeCCCC-ceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccccccCceeeeEEEE
Q 040145          305 FVVSELERMKLKVYDPSTD-SWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVV  383 (402)
Q Consensus       305 ~~~gg~~~~~~~~yd~~~~-~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~  383 (402)
                      ++... ....+..||++.+ .|+.-.  +.    .........+|.++|.+...+    .|..+|+...    +..|+.-
T Consensus       139 lv~~~-~~~~v~~~d~~G~~~w~~~~--~~----~~~~~~~~~~g~~~v~~~~~~----~v~~~d~~tG----~~~w~~~  203 (276)
T 3no2_A          139 LVPLF-ATSEVREIAPNGQLLNSVKL--SG----TPFSSAFLDNGDCLVACGDAH----CFVQLNLESN----RIVRRVN  203 (276)
T ss_dssp             EEEET-TTTEEEEECTTSCEEEEEEC--SS----CCCEEEECTTSCEEEECBTTS----EEEEECTTTC----CEEEEEE
T ss_pred             EEEec-CCCEEEEECCCCCEEEEEEC--CC----CccceeEcCCCCEEEEeCCCC----eEEEEeCcCC----cEEEEec
Confidence            66544 3568999999843 365432  11    112244455788888877543    3788886532    3467764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.91  E-value=0.034  Score=50.23  Aligned_cols=189  Identities=8%  Similarity=-0.052  Sum_probs=93.8

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc-ceEEEEE--CCEEEEEcCCCCCCCCCCeeE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS-FFASGVI--GGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      .++++..++..++.|+.+       ..+.+||..+++-..  .+..... -.+++..  +..+++.|+.      -..+.
T Consensus       131 ~~v~~spdg~~l~sgs~d-------~~i~iwd~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~l~s~s~------D~~v~  195 (344)
T 4gqb_B          131 STVSVLSSGTQAVSGSKD-------ICIKVWDLAQQVVLS--SYRAHAAQVTCVAASPHKDSVFLSCSE------DNRIL  195 (344)
T ss_dssp             EEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEE--EECCCSSCEEEEEECSSCTTEEEEEET------TSCEE
T ss_pred             EEEEECCCCCEEEEEeCC-------CeEEEEECCCCcEEE--EEcCcCCceEEEEecCCCCCceeeecc------ccccc
Confidence            444554577788888763       268999998875322  1111111 1222222  2356777765      34588


Q ss_pred             EEcCCCCcEEEcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--
Q 040145          226 VLDPVKGNWRTIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--  300 (402)
Q Consensus       226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--  300 (402)
                      +||..+.+-...-..........++.+   ++.+++.|+.+      ..+.+||..+++-  +.........-..+.+  
T Consensus       196 iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d------g~v~~wd~~~~~~--~~~~~~h~~~v~~v~fsp  267 (344)
T 4gqb_B          196 LWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN------GTVSLVDTKSTSC--VLSSAVHSQCVTGLVFSP  267 (344)
T ss_dssp             EEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT------SEEEEEESCC--C--CEEEECCSSCEEEEEECS
T ss_pred             cccccccceeeeeecceeeccceeeeecCCCCcceEEeccC------CcEEEEECCCCcE--EEEEcCCCCCEEEEEEcc
Confidence            999987764322111111112222222   45677777653      3688899876542  2110111111112333  


Q ss_pred             CC-EEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE--eCCEEEEEecCceeeeEEEEecc
Q 040145          301 YE-HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA--CDCRVYVVGRNLHVAVGHITRLS  368 (402)
Q Consensus       301 ~~-~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~~i~v~GG~~~~~~~~v~~~~  368 (402)
                      ++ ++++.|+. ...+.+||..+.+-.+..    ... ..-.+++.  .+..|++.||.++.  .-+|.++
T Consensus       268 ~g~~~lasgs~-D~~i~vwd~~~~~~~~~~----~H~-~~V~~v~~sp~~~~llas~s~D~~--v~~w~v~  330 (344)
T 4gqb_B          268 HSVPFLASLSE-DCSLAVLDSSLSELFRSQ----AHR-DFVRDATWSPLNHSLLTTVGWDHQ--VVHHVVP  330 (344)
T ss_dssp             SSSCCEEEEET-TSCEEEECTTCCEEEEEC----CCS-SCEEEEEECSSSTTEEEEEETTSC--EEEEECC
T ss_pred             CCCeEEEEEeC-CCeEEEEECCCCcEEEEc----CCC-CCEEEEEEeCCCCeEEEEEcCCCe--EEEEECC
Confidence            34 45555555 457899999877543332    111 11123333  24457777887655  2345543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.90  E-value=0.38  Score=47.84  Aligned_cols=212  Identities=12%  Similarity=0.085  Sum_probs=107.5

Q ss_pred             CCeEEEEEEe-CCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC------CCCCceE
Q 040145          104 DPWLFVFAFH-KCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV------DCPLDLV  176 (402)
Q Consensus       104 ~~~l~~~gg~-~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~------~~~~~~~  176 (402)
                      ++..+++..+ .......++++|..+++......++  .    ..+...+...+++.++++..+...      ......+
T Consensus       131 DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~----~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v  204 (695)
T 2bkl_A          131 DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE--G----GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTI  204 (695)
T ss_dssp             TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS--C----CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEE
T ss_pred             CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC--c----ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEE
Confidence            4444444333 3334567889999888764111111  0    112333444466555555442210      0124569


Q ss_pred             EEEECCCCcee--ecCCCccc-ccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145          177 LKYEMQKNRWT--VMNKMITA-RSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL  252 (402)
Q Consensus       177 ~~~d~~t~~W~--~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~  252 (402)
                      ++++..|+.-.  .+...+.. ......... +++.+++...+..  ....++++|..+..++.+..-....  ...+..
T Consensus       205 ~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~  280 (695)
T 2bkl_A          205 RYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKGVGAK--YEVHAW  280 (695)
T ss_dssp             EEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEECSSCC--EEEEEE
T ss_pred             EEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecCCCce--EEEEec
Confidence            99999887632  22222211 222233332 4443333332211  1457888887777787775322221  222235


Q ss_pred             CCEEEEEcccccCCccCCcEEEEeCCCCC---eeeccccccCCCceeEEEECCEEEEEeccC-CcEEEEEeCCCCceeec
Q 040145          253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDN---WESMAVGLREGWTGSSVVVYEHLFVVSELE-RMKLKVYDPSTDSWETI  328 (402)
Q Consensus       253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~yd~~~~~W~~~  328 (402)
                      +|.+|+.....   .....++.+|+.+..   |..+-...+..........++++++....+ ...++.+|+....-..+
T Consensus       281 ~g~l~~~s~~~---~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l  357 (695)
T 2bkl_A          281 KDRFYVLTDEG---APRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTV  357 (695)
T ss_dssp             TTEEEEEECTT---CTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred             CCcEEEEECCC---CCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence            66666654322   112478999997765   877754222222222234488888776544 35788889765544444

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.87  E-value=0.2  Score=44.47  Aligned_cols=154  Identities=15%  Similarity=0.158  Sum_probs=74.9

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      ++.+|+.....    ..+.++|+.+.+....-..+..     ......++..++ .+|+.+..       ...+++||+.
T Consensus        10 ~~~~~v~~~~~----~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~s~dg~~~~v~~~~-------~~~i~~~d~~   73 (349)
T 1jmx_B           10 GHEYMIVTNYP----NNLHVVDVASDTVYKSCVMPDK-----FGPGTAMMAPDNRTAYVLNNH-------YGDIYGIDLD   73 (349)
T ss_dssp             TCEEEEEEETT----TEEEEEETTTTEEEEEEECSSC-----CSSCEEEECTTSSEEEEEETT-------TTEEEEEETT
T ss_pred             CCEEEEEeCCC----CeEEEEECCCCcEEEEEecCCC-----CCCceeEECCCCCEEEEEeCC-------CCcEEEEeCC
Confidence            56677766432    3588999988875432222210     011223333344 57777643       2479999999


Q ss_pred             CCceeecCCCcc-----cccceEEEEE-CC-EEEEEcCC-----CCCCCCCCeeEEEcCCCCcEEE-cCCCCCCCcceeE
Q 040145          183 KNRWTVMNKMIT-----ARSFFASGVI-GG-MIYVAGGS-----SADLFELDSAEVLDPVKGNWRT-IASMGTNMASYDA  249 (402)
Q Consensus       183 t~~W~~~~~~~~-----~r~~~~~~~~-~~-~iyv~GG~-----~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~  249 (402)
                      +++-...-..+.     ......++.. ++ .+|+.+..     +........+.+||..++.-.. +.....+......
T Consensus        74 t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  153 (349)
T 1jmx_B           74 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM  153 (349)
T ss_dssp             TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE
T ss_pred             CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccce
Confidence            886543211111     1112233332 34 55555421     0000002578999988743211 1111112222222


Q ss_pred             EE-ECCEEEEEcccccCCccCCcEEEEeCCCCCe
Q 040145          250 AV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW  282 (402)
Q Consensus       250 ~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W  282 (402)
                      +. -+|++|+.++         .+.+||+.+++-
T Consensus       154 ~~s~dg~l~~~~~---------~i~~~d~~~~~~  178 (349)
T 1jmx_B          154 RAADDGSLYVAGP---------DIYKMDVKTGKY  178 (349)
T ss_dssp             EECTTSCEEEESS---------SEEEECTTTCCE
T ss_pred             eECCCCcEEEccC---------cEEEEeCCCCce
Confidence            22 3677777432         378888877653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.87  E-value=0.043  Score=48.75  Aligned_cols=235  Identities=11%  Similarity=0.118  Sum_probs=109.0

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc--CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc-
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR--EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR-  196 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r-  196 (402)
                      .+.+||..+.....+..+....    ....+++...  ++.+++.|+.+       ..+.+||..++.|..+..+.... 
T Consensus        36 ~v~lwd~~~~~~~~~~~l~gH~----~~V~~v~~~~~~~~~~l~s~s~D-------~~v~iWd~~~~~~~~~~~~~~h~~  104 (316)
T 3bg1_A           36 SVKIFDVRNGGQILIADLRGHE----GPVWQVAWAHPMYGNILASCSYD-------RKVIIWREENGTWEKSHEHAGHDS  104 (316)
T ss_dssp             EEEEEEEETTEEEEEEEEECCS----SCEEEEEECCGGGSSCEEEEETT-------SCEEEECCSSSCCCEEEEECCCSS
T ss_pred             eEEEEEecCCCcEEEEEEcCCC----ccEEEEEeCCCCCCCEEEEEECC-------CEEEEEECCCCcceEEEEccCCCC
Confidence            3677887766433222222110    1223333321  25677777763       26889999888775543222111 


Q ss_pred             cceEEEEE-C--CEEEEEcCCCCCCCCCCeeEEEcCCCC-cEEEcCCCCCCCcceeEEEE-------------------C
Q 040145          197 SFFASGVI-G--GMIYVAGGSSADLFELDSAEVLDPVKG-NWRTIASMGTNMASYDAAVL-------------------D  253 (402)
Q Consensus       197 ~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~~~~~~~~~~-------------------~  253 (402)
                      .-.+++.. +  +.+++.|+.      -..+.+||..+. .|.....+.........+..                   +
T Consensus       105 ~V~~v~~~p~~~g~~lasgs~------D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  178 (316)
T 3bg1_A          105 SVNSVCWAPHDYGLILACGSS------DGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNY  178 (316)
T ss_dssp             CCCEEEECCTTTCSCEEEECS------SSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCC
T ss_pred             ceEEEEECCCCCCcEEEEEcC------CCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccc
Confidence            11233332 2  456777765      345777887765 46543322211111111111                   1


Q ss_pred             CEEEEEcccccCCccCCcEEEEeCCC-CCeeeccccccCCCce-eEEEE--C----CEEEEEeccCCcEEEEEeCCC---
Q 040145          254 GKLLVTEGWLWPFFVSPRGQVYDPST-DNWESMAVGLREGWTG-SSVVV--Y----EHLFVVSELERMKLKVYDPST---  322 (402)
Q Consensus       254 g~ly~~gG~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~~~-~~~~~--~----~~l~~~gg~~~~~~~~yd~~~---  322 (402)
                      +++++.|+.+      ..+..||..+ +.|..+.. +...... ..+.+  +    +.+++.|+. ...+.+||..+   
T Consensus       179 ~~~l~sgs~D------~~v~lWd~~~~~~~~~~~~-l~~h~~~V~~v~~sp~~~~~~~~las~s~-D~~v~iw~~~~~~~  250 (316)
T 3bg1_A          179 IKRFASGGCD------NLIKLWKEEEDGQWKEEQK-LEAHSDWVRDVAWAPSIGLPTSTIASCSQ-DGRVFIWTCDDASS  250 (316)
T ss_dssp             CCBEECCBTT------SBCCEEEECTTSCEEEEEC-CBCCSSCEEEEECCCCSSCSCCEEEEEET-TCEEEEEECSSTTC
T ss_pred             cceEEEecCC------CeEEEEEeCCCCccceeee-cccCCCceEEEEecCCCCCCCceEEEEcC-CCeEEEEEccCccc
Confidence            3455666543      2566777753 45665543 2111111 12232  2    256666665 45788888765   


Q ss_pred             CceeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeCCCCCCC
Q 040145          323 DSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSD  391 (402)
Q Consensus       323 ~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~~~~~~~  391 (402)
                      ..|....   +........+++ ..++.+++.||.++.  ..+|..+. .      ..|+.+..-.+-.+
T Consensus       251 ~~~~~~~---~~~~~~~v~~v~~sp~g~~las~~~D~~--v~lw~~~~-~------g~~~~~~~~~~~~~  308 (316)
T 3bg1_A          251 NTWSPKL---LHKFNDVVWHVSWSITANILAVSGGDNK--VTLWKESV-D------GQWVCISDVNKGQG  308 (316)
T ss_dssp             CCCBCCE---EEECSSCEEEEEECTTTCCEEEEESSSC--EEEEEECT-T------SCEEEEEECC----
T ss_pred             cchhhhh---hhcCCCcEEEEEEcCCCCEEEEEcCCCe--EEEEEECC-C------CcEEEeeeccCCCC
Confidence            3343110   110001112233 356778888876554  23444332 1      25777665444443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.87  E-value=0.24  Score=44.54  Aligned_cols=238  Identities=7%  Similarity=0.041  Sum_probs=109.5

Q ss_pred             CCeEEEEEEeC-CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145          104 DPWLFVFAFHK-CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       104 ~~~l~~~gg~~-~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      +..||+...+. ......++.+|..+.+...+...+...    ......++ .++.||+....       ...+.+|+..
T Consensus        61 g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~----~~p~~~~~-dg~~l~~~~~~-------~~~v~~~~~~  128 (361)
T 3scy_A           61 GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG----ADPCYLTT-NGKNIVTANYS-------GGSITVFPIG  128 (361)
T ss_dssp             SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS----SCEEEEEE-CSSEEEEEETT-------TTEEEEEEBC
T ss_pred             CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC----CCcEEEEE-CCCEEEEEECC-------CCEEEEEEeC
Confidence            45577665431 223445566676667766554433111    11222333 35567776532       2378889886


Q ss_pred             CCc-eeecCC-------Ccc-----cccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCc-------EEE----
Q 040145          183 KNR-WTVMNK-------MIT-----ARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGN-------WRT----  236 (402)
Q Consensus       183 t~~-W~~~~~-------~~~-----~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~-------W~~----  236 (402)
                      ++. ...+..       -+.     ....+.++.. ++ .+|+.+..      ...+.+|+.....       ...    
T Consensus       129 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~------~~~v~v~~~~~~~~~~~~~~l~~~~~~  202 (361)
T 3scy_A          129 QDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG------TDQIHKFNINPNANADNKEKFLTKGTP  202 (361)
T ss_dssp             TTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT------TTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred             CCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC------CCEEEEEEEcCCCCcccccceeecccc
Confidence            432 222110       010     0112334443 44 57776532      3567777655432       211    


Q ss_pred             -cCCCCCCCcceeEEEE--CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccc--cccCCCcee-EEEE--CCE-EEE
Q 040145          237 -IASMGTNMASYDAAVL--DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGWTGS-SVVV--YEH-LFV  306 (402)
Q Consensus       237 -~~~~~~~~~~~~~~~~--~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~-~~~~--~~~-l~~  306 (402)
                       ....+.. .....+.+  +|+ +|+.+..      ...+.+||..+++...+..  ..+...... .+.+  +|+ ||+
T Consensus       203 ~~~~~~~~-~~~~~~~~spdg~~l~v~~~~------~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v  275 (361)
T 3scy_A          203 EAFKVAPG-SGPRHLIFNSDGKFAYLINEI------GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYA  275 (361)
T ss_dssp             EEEECCTT-CCEEEEEECTTSSEEEEEETT------TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEE
T ss_pred             cceecCCC-CCCeEEEEcCCCCEEEEEcCC------CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEE
Confidence             1111111 11222222  565 6665532      2468899988777655432  112211111 2333  565 554


Q ss_pred             EeccC-CcEEEEEeC--CCCceeecCCCCCCccccCCeEEE-EeCCE-EEEEecCceeeeEEEEecccccc
Q 040145          307 VSELE-RMKLKVYDP--STDSWETIEGPPLPEQICKPFAVN-ACDCR-VYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       307 ~gg~~-~~~~~~yd~--~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~-i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                      . ... .+.+.+|+.  .+.+++.+...+..   .....++ ..+++ ||+.+...+  ...+|.+|+...
T Consensus       276 ~-~~~~~~~i~v~~~~~~~g~~~~~~~~~~g---~~~~~~~~spdg~~l~~~~~~~~--~v~v~~~d~~~g  340 (361)
T 3scy_A          276 S-NRLKADGVAIFKVDETNGTLTKVGYQLTG---IHPRNFIITPNGKYLLVACRDTN--VIQIFERDQATG  340 (361)
T ss_dssp             E-ECSSSCEEEEEEECTTTCCEEEEEEEECS---SCCCEEEECTTSCEEEEEETTTT--EEEEEEECTTTC
T ss_pred             E-CCCCCCEEEEEEEcCCCCcEEEeeEecCC---CCCceEEECCCCCEEEEEECCCC--CEEEEEEECCCC
Confidence            4 433 456666655  46677666532221   2222333 34555 555543332  245666775443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.84  E-value=0.034  Score=50.15  Aligned_cols=187  Identities=12%  Similarity=0.171  Sum_probs=99.9

Q ss_pred             EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc--cccceEEEEE-CCEEEEEcCCCCCCCCCCeeEE
Q 040145          150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT--ARSFFASGVI-GGMIYVAGGSSADLFELDSAEV  226 (402)
Q Consensus       150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~--~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~  226 (402)
                      .++...++.+++.||.+       ..+.+||..++.|.....+..  ...-.+++.. +++.++.|+.      -..+.+
T Consensus        21 ~l~~sp~g~~las~~~D-------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~------D~~v~i   87 (345)
T 3fm0_A           21 FLAWNPAGTLLASCGGD-------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF------DATTCI   87 (345)
T ss_dssp             EEEECTTSSCEEEEETT-------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET------TSCEEE
T ss_pred             EEEECCCCCEEEEEcCC-------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC------CCcEEE
Confidence            34444577788888763       268889988887754322211  1112223332 5666777775      345778


Q ss_pred             EcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCC-eeeccccccCCCce-eEEEE--
Q 040145          227 LDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDN-WESMAVGLREGWTG-SSVVV--  300 (402)
Q Consensus       227 yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~-~~~~~--  300 (402)
                      ||..++.+..+..+.........+.+  ++.+++.|+.+      ..+.+||+.+.. +..+.. ....... ..+..  
T Consensus        88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD------KSVWVWEVDEEDEYECVSV-LNSHTQDVKHVVWHP  160 (345)
T ss_dssp             EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEEECTTSCEEEEEE-ECCCCSCEEEEEECS
T ss_pred             EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC------CeEEEEECCCCCCeEEEEE-ecCcCCCeEEEEECC
Confidence            88877766554433332222333333  67777777754      368888886643 332322 1111111 11222  


Q ss_pred             CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCcee
Q 040145          301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHV  359 (402)
Q Consensus       301 ~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~  359 (402)
                      ++.+++.|+. ...+.+||..+..|..+..  +......-.++. ..+++.++.|+.++.
T Consensus       161 ~~~~l~s~s~-d~~i~~w~~~~~~~~~~~~--~~~h~~~v~~l~~sp~g~~l~s~s~D~~  217 (345)
T 3fm0_A          161 SQELLASASY-DDTVKLYREEEDDWVCCAT--LEGHESTVWSLAFDPSGQRLASCSDDRT  217 (345)
T ss_dssp             SSSCEEEEET-TSCEEEEEEETTEEEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCEEEEEeC-CCcEEEEEecCCCEEEEEE--ecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence            5666777665 4578889988888765432  211111112232 246777777776544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.2  Score=44.74  Aligned_cols=220  Identities=11%  Similarity=-0.020  Sum_probs=103.6

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+++.++.+.    .+.+||..+.+-...  +....    ....++.+..++..++.|+.+       ..+.+||..+
T Consensus        43 ~~~~l~~~~~dg----~i~vwd~~~~~~~~~--~~~h~----~~v~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~  105 (369)
T 3zwl_B           43 EGDLLFSCSKDS----SASVWYSLNGERLGT--LDGHT----GTIWSIDVDCFTKYCVTGSAD-------YSIKLWDVSN  105 (369)
T ss_dssp             TSCEEEEEESSS----CEEEEETTTCCEEEE--ECCCS----SCEEEEEECTTSSEEEEEETT-------TEEEEEETTT
T ss_pred             CCCEEEEEeCCC----EEEEEeCCCchhhhh--hhhcC----CcEEEEEEcCCCCEEEEEeCC-------CeEEEEECCC
Confidence            344444444332    377888776654321  11101    223344444456677777652       3799999988


Q ss_pred             CceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc----EEEcCCCCC-----CCc--ceeEEE
Q 040145          184 NRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN----WRTIASMGT-----NMA--SYDAAV  251 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~----W~~~~~~~~-----~~~--~~~~~~  251 (402)
                      ++-...-.  .......+... ++..+++++.+.... ...+.+||..+..    +......+.     ...  ....+.
T Consensus       106 ~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~-~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (369)
T 3zwl_B          106 GQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKN-PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG  182 (369)
T ss_dssp             CCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTB-CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred             CcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCC-CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence            76433222  11112222222 445555554421111 3567788776542    221111110     000  222222


Q ss_pred             E--CCEEEEEcccccCCccCCcEEEEeCCCC-Cee-eccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCce
Q 040145          252 L--DGKLLVTEGWLWPFFVSPRGQVYDPSTD-NWE-SMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSW  325 (402)
Q Consensus       252 ~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~-~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W  325 (402)
                      +  +++.++.|+.+      ..+..||+.++ .-. .+.. . .... ..+.+  ++.+++.++. ...+.+||..+..-
T Consensus       183 ~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-~-~~~v-~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          183 WSTKGKYIIAGHKD------GKISKYDVSNNYEYVDSIDL-H-EKSI-SDMQFSPDLTYFITSSR-DTNSFLVDVSTLQV  252 (369)
T ss_dssp             ECGGGCEEEEEETT------SEEEEEETTTTTEEEEEEEC-C-SSCE-EEEEECTTSSEEEEEET-TSEEEEEETTTCCE
T ss_pred             EcCCCCEEEEEcCC------CEEEEEECCCCcEeEEEEec-C-CCce-eEEEECCCCCEEEEecC-CceEEEEECCCCce
Confidence            2  56666666543      36899999873 221 1111 1 1111 12222  6666666665 55899999987654


Q ss_pred             eecCCCCCCccccCCeEEEEeCCEEEEEecCc
Q 040145          326 ETIEGPPLPEQICKPFAVNACDCRVYVVGRNL  357 (402)
Q Consensus       326 ~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~  357 (402)
                      ...-  ....  .........+++.+++|+..
T Consensus       253 ~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~  280 (369)
T 3zwl_B          253 LKKY--ETDC--PLNTAVITPLKEFIILGGGQ  280 (369)
T ss_dssp             EEEE--ECSS--CEEEEEECSSSSEEEEEECC
T ss_pred             eeee--cCCC--CceeEEecCCCceEEEeecC
Confidence            4322  1110  11122334456666666644

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.81  E-value=0.27  Score=44.21  Aligned_cols=193  Identities=9%  Similarity=0.005  Sum_probs=88.7

Q ss_pred             CceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccc-
Q 040145          117 GKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITA-  195 (402)
Q Consensus       117 ~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~-  195 (402)
                      ....++.+|+.+.+...+.......    . ...+....+..||+.+... +. ...-.+|.+|..+++.+.+...+.. 
T Consensus        27 ~~i~~~~~d~~~g~~~~~~~~~~~~----p-~~l~~spdg~~l~~~~~~~-~~-~~~v~~~~~~~~~g~~~~~~~~~~~~   99 (361)
T 3scy_A           27 KGIYTFRFNEETGESLPLSDAEVAN----P-SYLIPSADGKFVYSVNEFS-KD-QAAVSAFAFDKEKGTLHLLNTQKTMG   99 (361)
T ss_dssp             CEEEEEEEETTTCCEEEEEEEECSC----C-CSEEECTTSSEEEEEECCS-ST-TCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred             CCEEEEEEeCCCCCEEEeecccCCC----C-ceEEECCCCCEEEEEEccC-CC-CCcEEEEEEeCCCCcEEEeeEeccCC
Confidence            4455677788888876654331111    1 1222222234577665431 10 1222345556666777766544422 


Q ss_pred             ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcC-------CCCCC-C----cceeEEEE-CCE-EEEEc
Q 040145          196 RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIA-------SMGTN-M----ASYDAAVL-DGK-LLVTE  260 (402)
Q Consensus       196 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~-------~~~~~-~----~~~~~~~~-~g~-ly~~g  260 (402)
                      .....++.-+..+|+....      ...+.+|+..++. ...+.       .-+.+ |    ..+..+.. +|+ +|+.+
T Consensus       100 ~~p~~~~~dg~~l~~~~~~------~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~  173 (361)
T 3scy_A          100 ADPCYLTTNGKNIVTANYS------GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD  173 (361)
T ss_dssp             SCEEEEEECSSEEEEEETT------TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred             CCcEEEEECCCEEEEEECC------CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence            2222333323356666532      3567888876432 11110       00110 0    11223332 565 66654


Q ss_pred             ccccCCccCCcEEEEeCCCCC-------eeec---c-ccccCCCceeEEEE--CCE-EEEEeccCCcEEEEEeCCCCcee
Q 040145          261 GWLWPFFVSPRGQVYDPSTDN-------WESM---A-VGLREGWTGSSVVV--YEH-LFVVSELERMKLKVYDPSTDSWE  326 (402)
Q Consensus       261 G~~~~~~~~~~~~~yd~~~~~-------W~~~---~-~~~~~~~~~~~~~~--~~~-l~~~gg~~~~~~~~yd~~~~~W~  326 (402)
                      ..      ...+.+|+.....       ....   . ...+.......+.+  +|+ +|+.. .....+.+||..+.+..
T Consensus       174 ~~------~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-~~~~~v~v~~~~~g~~~  246 (361)
T 3scy_A          174 LG------TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLIN-EIGGTVIAFRYADGMLD  246 (361)
T ss_dssp             TT------TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-TTTCEEEEEEEETTEEE
T ss_pred             CC------CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEc-CCCCeEEEEEecCCceE
Confidence            32      2367777665443       2211   1 01111111112233  555 66554 33567899998877765


Q ss_pred             ecC
Q 040145          327 TIE  329 (402)
Q Consensus       327 ~~~  329 (402)
                      .+.
T Consensus       247 ~~~  249 (361)
T 3scy_A          247 EIQ  249 (361)
T ss_dssp             EEE
T ss_pred             EeE
Confidence            544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.80  E-value=0.31  Score=44.94  Aligned_cols=181  Identities=10%  Similarity=0.082  Sum_probs=93.6

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF  199 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  199 (402)
                      .++++|..+++...+-.+....    ..-.+++...++..++.|+.+       ..+.+||..+++-...  +.......
T Consensus       126 tV~lWd~~tg~~~~~~~~~~~~----~~V~sv~fspdg~~lasgs~D-------g~v~iWd~~~~~~~~~--~~~h~~~v  192 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQMEQPG----EYISSVAWIKEGNYLAVGTSS-------AEVQLWDVQQQKRLRN--MTSHSARV  192 (420)
T ss_dssp             EEEEEETTTCCEEEEEECCSTT----CCEEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEE--ECCCSSCE
T ss_pred             EEEEEECCCCCEEEEEEecCCC----CcEEEEEECCCCCEEEEEECC-------CeEEEEEcCCCcEEEE--EeCCCCce
Confidence            4889999988766543333111    223455565677888888763       2699999988753221  11112223


Q ss_pred             EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeC
Q 040145          200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDP  277 (402)
Q Consensus       200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~  277 (402)
                      .....++.+++.|+.      ...+..+|..+...... .+...........  .++..++.++.+      ..+.++|.
T Consensus       193 ~~~s~~~~~l~sgs~------d~~i~~~d~~~~~~~~~-~~~~h~~~~~~~~~~~~g~~l~s~~~D------~~v~i~~~  259 (420)
T 4gga_A          193 GSLSWNSYILSSGSR------SGHIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGND------NLVNVWPS  259 (420)
T ss_dssp             EEEEEETTEEEEEET------TSEEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEEEEEETT------SCEEEEES
T ss_pred             EEEeeCCCEEEEEeC------CCceeEeeecccceeeE-EecccccceeeeeecCCCCeeeeeecc------ccceEEee
Confidence            334456677777765      45577777765432211 1111111111222  256666666643      35777887


Q ss_pred             CCCC--eeeccccccCCCceeEEEE---CCEEEEE-eccCCcEEEEEeCCCCcee
Q 040145          278 STDN--WESMAVGLREGWTGSSVVV---YEHLFVV-SELERMKLKVYDPSTDSWE  326 (402)
Q Consensus       278 ~~~~--W~~~~~~~~~~~~~~~~~~---~~~l~~~-gg~~~~~~~~yd~~~~~W~  326 (402)
                      .+++  +..+.........-.++..   +..+++. +|.....|.+||..+.+-.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~  314 (420)
T 4gga_A          260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL  314 (420)
T ss_dssp             SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred             ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence            6543  2222211111111111222   3445444 4544568999999887543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.78  E-value=0.21  Score=45.82  Aligned_cols=177  Identities=11%  Similarity=0.049  Sum_probs=94.5

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF  199 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  199 (402)
                      .+.+||..+.+..........     ....+++...++.+++.|+.+       ..+.+||..+++....  +.......
T Consensus       114 ~v~lw~~~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~--~~~~~~~v  179 (401)
T 4aez_A          114 NVYVWNADSGSVSALAETDES-----TYVASVKWSHDGSFLSVGLGN-------GLVDIYDVESQTKLRT--MAGHQARV  179 (401)
T ss_dssp             EEEEEETTTCCEEEEEECCTT-----CCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEE--ECCCSSCE
T ss_pred             eEEEeeCCCCcEeEeeecCCC-----CCEEEEEECCCCCEEEEECCC-------CeEEEEECcCCeEEEE--ecCCCCce
Confidence            378899988876554333211     223445554567777777652       2689999988753321  11111222


Q ss_pred             EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEE
Q 040145          200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVY  275 (402)
Q Consensus       200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~y  275 (402)
                      .....++.+++.|+.      ...+.+||..+..  -..+..   .......+.+  ++.+++.|+.+      ..+.+|
T Consensus       180 ~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d------~~v~iw  244 (401)
T 4aez_A          180 GCLSWNRHVLSSGSR------SGAIHHHDVRIANHQIGTLQG---HSSEVCGLAWRSDGLQLASGGND------NVVQIW  244 (401)
T ss_dssp             EEEEEETTEEEEEET------TSEEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEEETT------SCEEEE
T ss_pred             EEEEECCCEEEEEcC------CCCEEEEecccCcceeeEEcC---CCCCeeEEEEcCCCCEEEEEeCC------CeEEEc
Confidence            223335566677765      4578899987432  111111   1112222222  67777777753      368999


Q ss_pred             eCCCCCeeeccccccCCCceeEEEE--CCEEEEEec-cCCcEEEEEeCCCCcee
Q 040145          276 DPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSE-LERMKLKVYDPSTDSWE  326 (402)
Q Consensus       276 d~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg-~~~~~~~~yd~~~~~W~  326 (402)
                      |+.+.+-...-..... .....+..  ++.+++.|+ .....+.+||..+.+-.
T Consensus       245 d~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~  297 (401)
T 4aez_A          245 DARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV  297 (401)
T ss_dssp             ETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred             cCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence            9987543221111111 11112222  446777764 33568999999876543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.77  E-value=0.52  Score=46.99  Aligned_cols=250  Identities=8%  Similarity=0.032  Sum_probs=122.3

Q ss_pred             CCeEEEEEE-eCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC---------CCCC
Q 040145          104 DPWLFVFAF-HKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV---------DCPL  173 (402)
Q Consensus       104 ~~~l~~~gg-~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~---------~~~~  173 (402)
                      ++..+++.. ........++++|..+++........       ......+...+++-++++......         ....
T Consensus       135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~  207 (710)
T 2xdw_A          135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-------VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH  207 (710)
T ss_dssp             TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-------ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-------cccceEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence            334444433 33344457899999998876532111       112223333355433333332110         0224


Q ss_pred             ceEEEEECCCCcee--ecCCCc-ccccceEEEEE-CCE-EEEEcCCCCCCCCCCeeEEEcCCC------C--cEEEcCCC
Q 040145          174 DLVLKYEMQKNRWT--VMNKMI-TARSFFASGVI-GGM-IYVAGGSSADLFELDSAEVLDPVK------G--NWRTIASM  240 (402)
Q Consensus       174 ~~~~~~d~~t~~W~--~~~~~~-~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~yd~~t------~--~W~~~~~~  240 (402)
                      ..+++++..|+...  .+...+ .+......... +++ |++..... ... .+.++++|..+      .  .++.+...
T Consensus       208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~-~~~l~~~d~~~~~~~~~~~~~~~~l~~~  285 (710)
T 2xdw_A          208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG-CDP-VNRLWYCDLQQESNGITGILKWVKLIDN  285 (710)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS-SSS-CCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc-CCC-ccEEEEEECcccccccCCccceEEeeCC
Confidence            56999999887643  221111 12222233332 444 44433221 111 46789999876      4  57766432


Q ss_pred             CCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCC---CeeeccccccCCCceeEEEE-CCEEEEEeccC-CcEE
Q 040145          241 GTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD---NWESMAVGLREGWTGSSVVV-YEHLFVVSELE-RMKL  315 (402)
Q Consensus       241 ~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~-~~~~  315 (402)
                      ..... .....-++.||+.+.....   ...++.+|+.+.   .|+.+............... ++.+++....+ ...+
T Consensus       286 ~~~~~-~~~s~dg~~l~~~s~~~~~---~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l  361 (710)
T 2xdw_A          286 FEGEY-DYVTNEGTVFTFKTNRHSP---NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL  361 (710)
T ss_dssp             SSSCE-EEEEEETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred             CCcEE-EEEeccCCEEEEEECCCCC---CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEE
Confidence            22211 1122235678887654321   236899998875   48877543222122223344 67777776544 3468


Q ss_pred             EEEeCCCCc-eeecCCCCCCccccCCeEEEE-eCC-EEEEEecCceeeeEEEEecccccc
Q 040145          316 KVYDPSTDS-WETIEGPPLPEQICKPFAVNA-CDC-RVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       316 ~~yd~~~~~-W~~~~~~~~p~~~~~~~~~~~-~~~-~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                      +++|+.+.+ ...+.   .+.  ....++.. .++ .|++..... ....+++.||....
T Consensus       362 ~~~~~~~g~~~~~l~---~~~--~~v~~~~~s~d~~~l~~~~ss~-~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          362 QLHDLATGALLKIFP---LEV--GSVVGYSGQKKDTEIFYQFTSF-LSPGIIYHCDLTKE  415 (710)
T ss_dssp             EEEETTTCCEEEEEC---CCS--SEEEEEECCTTCSEEEEEEECS-SCCCEEEEEETTSS
T ss_pred             EEEECCCCCEEEecC---CCC--ceEEEEecCCCCCEEEEEEeCC-CCCCEEEEEECCCC
Confidence            999985554 44543   331  11112222 234 454443322 23456788876443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.77  E-value=0.28  Score=43.84  Aligned_cols=207  Identities=12%  Similarity=0.128  Sum_probs=102.3

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCccccc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITARS  197 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r~  197 (402)
                      .+.++|..+.+-...-+..  .    ....++.+..++..++.||.+       ..+.+||..+..  .+....+.....
T Consensus        78 ~v~iWd~~~~~~~~~~~~~--~----~~v~~~~~s~~~~~l~s~~~d-------~~v~iw~~~~~~~~~~~~~~~~~h~~  144 (340)
T 1got_B           78 KLIIWDSYTTNKVHAIPLR--S----SWVMTCAYAPSGNYVACGGLD-------NICSIYNLKTREGNVRVSRELAGHTG  144 (340)
T ss_dssp             EEEEEETTTCCEEEEEECS--S----SCEEEEEECTTSSEEEEEETT-------CEEEEEETTTCSBSCEEEEEEECCSS
T ss_pred             cEEEEECCCCCcceEeecC--C----ccEEEEEECCCCCEEEEEeCC-------CeEEEEECccCCCcceeEEEecCCCc
Confidence            3677887765532211111  1    223344454567777788763       378899987653  111111111111


Q ss_pred             -ceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEE
Q 040145          198 -FFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQ  273 (402)
Q Consensus       198 -~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~  273 (402)
                       -..+.. -++. ++.|+.      -..+.+||..++.-...  +.........+.+  ++.+++.|+.+      ..+.
T Consensus       145 ~v~~~~~~~~~~-l~s~s~------d~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d------~~v~  209 (340)
T 1got_B          145 YLSCCRFLDDNQ-IVTSSG------DTTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACD------ASAK  209 (340)
T ss_dssp             CEEEEEEEETTE-EEEEET------TSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SCEE
T ss_pred             cEEEEEECCCCc-EEEEEC------CCcEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCC------CcEE
Confidence             112222 2455 444543      35688999988764322  1111112222222  67777777754      3688


Q ss_pred             EEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEE-EEeCCEE
Q 040145          274 VYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAV-NACDCRV  350 (402)
Q Consensus       274 ~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~-~~~~~~i  350 (402)
                      .||+.++.-...-.... ... .++.+  ++.+++.|+. ...+.+||..+..-...-  ..+.......++ ...++++
T Consensus       210 ~wd~~~~~~~~~~~~h~-~~v-~~v~~~p~~~~l~s~s~-d~~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~  284 (340)
T 1got_B          210 LWDVREGMCRQTFTGHE-SDI-NAICFFPNGNAFATGSD-DATCRLFDLRADQELMTY--SHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             EEETTTCSEEEEECCCS-SCE-EEEEECTTSSEEEEEET-TSCEEEEETTTTEEEEEE--CCTTCCSCEEEEEECTTSSE
T ss_pred             EEECCCCeeEEEEcCCc-CCE-EEEEEcCCCCEEEEEcC-CCcEEEEECCCCcEEEEE--ccCCcccceEEEEECCCCCE
Confidence            99987764322111011 111 12222  6777777775 457899999876432211  111110111122 2357788


Q ss_pred             EEEecCcee
Q 040145          351 YVVGRNLHV  359 (402)
Q Consensus       351 ~v~GG~~~~  359 (402)
                      ++.|+.+..
T Consensus       285 l~~g~~d~~  293 (340)
T 1got_B          285 LLAGYDDFN  293 (340)
T ss_dssp             EEEEETTSE
T ss_pred             EEEECCCCe
Confidence            888876544

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.74  E-value=0.16  Score=46.22  Aligned_cols=147  Identities=14%  Similarity=0.031  Sum_probs=74.0

Q ss_pred             EEEEEeCccCCCCCCCceEEEEECCCCc------eeecCCCccc---ccceEEEEE-----CCEE-EEEcCCCCCCCCCC
Q 040145          158 TLFVCGGMVSDVDCPLDLVLKYEMQKNR------WTVMNKMITA---RSFFASGVI-----GGMI-YVAGGSSADLFELD  222 (402)
Q Consensus       158 ~i~v~GG~~~~~~~~~~~~~~~d~~t~~------W~~~~~~~~~---r~~~~~~~~-----~~~i-yv~GG~~~~~~~~~  222 (402)
                      .+++.|+.+       ..+.+||..++.      +..+......   ..-.++...     ++.. ++.|+.      ..
T Consensus        82 ~~l~s~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~------dg  148 (397)
T 1sq9_A           82 CLVATTSFS-------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV------KG  148 (397)
T ss_dssp             EEEEEEETT-------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET------TS
T ss_pred             cEEEEEcCC-------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC------CC
Confidence            777777752       268899988776      6655443211   222233333     3555 666665      34


Q ss_pred             eeEEEcCCC------Cc---EEEcCCC-------CCCCcceeEE-EE-CCEEEEEcccccCCccCCcEEEEeCCCCCeee
Q 040145          223 SAEVLDPVK------GN---WRTIASM-------GTNMASYDAA-VL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES  284 (402)
Q Consensus       223 ~~~~yd~~t------~~---W~~~~~~-------~~~~~~~~~~-~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~  284 (402)
                      .+.+||..+      ..   |.....+       .........+ .. ++ +++.|+.+      ..+..||+.+.+-..
T Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d------g~i~i~d~~~~~~~~  221 (397)
T 1sq9_A          149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN------GTVQISELSTLRPLY  221 (397)
T ss_dssp             CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT------SEEEEEETTTTEEEE
T ss_pred             cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC------CcEEEEECCCCceeE
Confidence            577787766      22   1110011       0011112222 22 56 66666643      368999998764322


Q ss_pred             ccccc--c--CCCceeEEEE--CCEEEEEeccCC--cEEEEEeCCCCc
Q 040145          285 MAVGL--R--EGWTGSSVVV--YEHLFVVSELER--MKLKVYDPSTDS  324 (402)
Q Consensus       285 ~~~~~--~--~~~~~~~~~~--~~~l~~~gg~~~--~~~~~yd~~~~~  324 (402)
                      .-...  .  ....-..+.+  ++.++++|+.+.  ..+.+||..+.+
T Consensus       222 ~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~  269 (397)
T 1sq9_A          222 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE  269 (397)
T ss_dssp             EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             EEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc
Confidence            11110  0  0111112233  577777766531  689999998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.74  E-value=0.11  Score=52.52  Aligned_cols=206  Identities=9%  Similarity=-0.041  Sum_probs=101.2

Q ss_pred             eEEEeecCCCcEEe-CCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc
Q 040145          120 QWQVLDLTHYCWHT-IPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF  198 (402)
Q Consensus       120 ~~~~~d~~~~~W~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  198 (402)
                      .+.+||..+.+... +....       ....++....++..+++|+.+       ..+.+||..+++....-.. ....-
T Consensus        36 ~v~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~-~~~~v  100 (814)
T 3mkq_A           36 RVEIWNYETQVEVRSIQVTE-------TPVRAGKFIARKNWIIVGSDD-------FRIRVFNYNTGEKVVDFEA-HPDYI  100 (814)
T ss_dssp             EEEEEETTTTEEEEEEECCS-------SCEEEEEEEGGGTEEEEEETT-------SEEEEEETTTCCEEEEEEC-CSSCE
T ss_pred             EEEEEECCCCceEEEEecCC-------CcEEEEEEeCCCCEEEEEeCC-------CeEEEEECCCCcEEEEEec-CCCCE
Confidence            47788887765432 22111       223344444466677777652       3799999988865332110 11111


Q ss_pred             eEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCC-cEEEcCCCCCCCcceeE-EEE--CCEEEEEcccccCCccCCcEE
Q 040145          199 FASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKG-NWRTIASMGTNMASYDA-AVL--DGKLLVTEGWLWPFFVSPRGQ  273 (402)
Q Consensus       199 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~~~~~~~-~~~--~g~ly~~gG~~~~~~~~~~~~  273 (402)
                      .+++.. ++..++.|+.      ...+.+||..++ .....  +......... +..  ++.+++.|+.+      ..+.
T Consensus       101 ~~~~~s~~~~~l~~~~~------dg~i~vw~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~v~  166 (814)
T 3mkq_A          101 RSIAVHPTKPYVLSGSD------DLTVKLWNWENNWALEQT--FEGHEHFVMCVAFNPKDPSTFASGCLD------RTVK  166 (814)
T ss_dssp             EEEEECSSSSEEEEEET------TSEEEEEEGGGTSEEEEE--EECCSSCEEEEEEETTEEEEEEEEETT------SEEE
T ss_pred             EEEEEeCCCCEEEEEcC------CCEEEEEECCCCceEEEE--EcCCCCcEEEEEEEcCCCCEEEEEeCC------CeEE
Confidence            222322 4555556654      356888998765 22221  1111111222 222  45677776653      3688


Q ss_pred             EEeCCCCCeeeccccccCCCceeEEE-E--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEE
Q 040145          274 VYDPSTDNWESMAVGLREGWTGSSVV-V--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRV  350 (402)
Q Consensus       274 ~yd~~~~~W~~~~~~~~~~~~~~~~~-~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i  350 (402)
                      .||+.+..-...-...........+. -  ++..+++|+. ...+.+||..+.+-...-  ... ...........++.+
T Consensus       167 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~  242 (814)
T 3mkq_A          167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATL--EGH-MSNVSFAVFHPTLPI  242 (814)
T ss_dssp             EEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT-TSEEEEEETTTTEEEEEE--ECC-SSCEEEEEECSSSSE
T ss_pred             EEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC-CCEEEEEECCCCcEEEEE--cCC-CCCEEEEEEcCCCCE
Confidence            99987654322111111111111222 2  6777777665 558999998776532211  111 001111222346667


Q ss_pred             EEEecCce
Q 040145          351 YVVGRNLH  358 (402)
Q Consensus       351 ~v~GG~~~  358 (402)
                      ++.|+.++
T Consensus       243 l~~~~~dg  250 (814)
T 3mkq_A          243 IISGSEDG  250 (814)
T ss_dssp             EEEEETTS
T ss_pred             EEEEeCCC
Confidence            77777543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.73  E-value=0.0076  Score=54.88  Aligned_cols=149  Identities=14%  Similarity=0.018  Sum_probs=76.1

Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce-EEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF-ASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKG  232 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~  232 (402)
                      .++.+++.|+.+       ..+.+||..++.|+.+..+....... ++... ++++++.|+.      -..+.+||..++
T Consensus        21 ~~g~~l~~~~~d-------~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~------d~~v~vwd~~~~   87 (377)
T 3dwl_C           21 SQRTEFVTTTAT-------NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ------DRNAYVYEKRPD   87 (377)
T ss_dssp             SSSSEEECCCSS-------SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET------TSSEEEC-----
T ss_pred             CCCCEEEEecCC-------CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC------CCeEEEEEcCCC
Confidence            366677777652       26888999988887766655333322 33333 4566677765      346889998887


Q ss_pred             c-EEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCC-eeecccccc-CCCceeEEEE--CCEEE
Q 040145          233 N-WRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDN-WESMAVGLR-EGWTGSSVVV--YEHLF  305 (402)
Q Consensus       233 ~-W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~-~~~~~~~~~~--~~~l~  305 (402)
                      . |.....+.........+.+  ++++++.|+.+      ..+..||+.+++ |..+..... ....-..+.+  ++.++
T Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA------RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS------SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred             CceeeeeEecccCCceEEEEECCCCCEEEEEecC------CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence            6 4433222222222223333  56666666643      368889988764 443332111 1111112233  56777


Q ss_pred             EEeccCCcEEEEEeCCCC
Q 040145          306 VVSELERMKLKVYDPSTD  323 (402)
Q Consensus       306 ~~gg~~~~~~~~yd~~~~  323 (402)
                      +.|+. ...+.+||..+.
T Consensus       162 ~~~~~-d~~i~iwd~~~~  178 (377)
T 3dwl_C          162 AAGCA-DRKAYVLSAYVR  178 (377)
T ss_dssp             EEEES-SSCEEEEEECCS
T ss_pred             EEEeC-CCEEEEEEEEec
Confidence            77765 456888887543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.19  Score=44.81  Aligned_cols=219  Identities=11%  Similarity=0.014  Sum_probs=102.4

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc----eeecCCCc--
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR----WTVMNKMI--  193 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~----W~~~~~~~--  193 (402)
                      .+.+||..+.+....-...       .....+.+..++..++.++.+..  .....+.+||..+..    +......+  
T Consensus        97 ~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~~~~--~~~g~i~~~d~~~~~~~~~~~~~~~~~~~  167 (369)
T 3zwl_B           97 SIKLWDVSNGQCVATWKSP-------VPVKRVEFSPCGNYFLAILDNVM--KNPGSINIYEIERDSATHELTKVSEEPIH  167 (369)
T ss_dssp             EEEEEETTTCCEEEEEECS-------SCEEEEEECTTSSEEEEEECCBT--TBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred             eEEEEECCCCcEEEEeecC-------CCeEEEEEccCCCEEEEecCCcc--CCCCEEEEEEecCCccceeecccccceee
Confidence            4778888777643322222       22334444446666666554211  123478888876653    11111111  


Q ss_pred             ---cccc--ceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCC-CcEEEcCCCCCCCcceeEEEE--CCEEEEEcccc
Q 040145          194 ---TARS--FFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVK-GNWRTIASMGTNMASYDAAVL--DGKLLVTEGWL  263 (402)
Q Consensus       194 ---~~r~--~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~  263 (402)
                         ....  .......  +++.+++|+.      ...+.+||..+ ..-...  +.........+.+  ++.+++.++.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d  239 (369)
T 3zwl_B          168 KIITHEGLDAATVAGWSTKGKYIIAGHK------DGKISKYDVSNNYEYVDS--IDLHEKSISDMQFSPDLTYFITSSRD  239 (369)
T ss_dssp             EEECCTTCCCEEEEEECGGGCEEEEEET------TSEEEEEETTTTTEEEEE--EECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eccCCcCccceeEEEEcCCCCEEEEEcC------CCEEEEEECCCCcEeEEE--EecCCCceeEEEECCCCCEEEEecCC
Confidence               0010  2222222  4556666664      45689999987 332211  1111112222222  66666666543


Q ss_pred             cCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCc-------------EEEEEeCCCCceeecCC
Q 040145          264 WPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERM-------------KLKVYDPSTDSWETIEG  330 (402)
Q Consensus       264 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~-------------~~~~yd~~~~~W~~~~~  330 (402)
                            ..+.+||..+.+-...-. ...........-++..+++|+.+..             .+..||..+.+=...  
T Consensus       240 ------~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--  310 (369)
T 3zwl_B          240 ------TNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR--  310 (369)
T ss_dssp             ------SEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE--
T ss_pred             ------ceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh--
Confidence                  368899998765432221 1111111112235555656554321             688888876542221  


Q ss_pred             CCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEecc
Q 040145          331 PPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLS  368 (402)
Q Consensus       331 ~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~  368 (402)
                        +......-.++. ..++++++.|+.+..  ..+|.++
T Consensus       311 --~~~~~~~v~~~~~s~~~~~l~s~~~dg~--v~iw~~~  345 (369)
T 3zwl_B          311 --VQGHFGPLNTVAISPQGTSYASGGEDGF--IRLHHFE  345 (369)
T ss_dssp             --EECCSSCEEEEEECTTSSEEEEEETTSE--EEEEEEC
T ss_pred             --eecccCcEEEEEECCCCCEEEEEcCCCe--EEEEECc
Confidence              111001111222 347788888876544  3344443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.71  E-value=0.089  Score=47.83  Aligned_cols=142  Identities=9%  Similarity=-0.011  Sum_probs=78.8

Q ss_pred             EEEEEeCccCCCCCCCceEEEEECCCCceeecCCC-cccccceEEEEEC--CEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145          158 TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM-ITARSFFASGVIG--GMIYVAGGSSADLFELDSAEVLDPVKGNW  234 (402)
Q Consensus       158 ~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~-~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  234 (402)
                      .+++.|+.+       ..+.+||..+++....-.. .....-.++....  +.+++.|+.      ...+.+||..+...
T Consensus        87 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~  153 (383)
T 3ei3_B           87 TTVAVGSKG-------GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI------RGATTLRDFSGSVI  153 (383)
T ss_dssp             TEEEEEEBT-------SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET------TTEEEEEETTSCEE
T ss_pred             CEEEEEcCC-------CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC------CCEEEEEECCCCce
Confidence            567777652       2689999998876554332 1222223444443  466677765      45688999988766


Q ss_pred             EEcCCCCCCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCE-EEEEec
Q 040145          235 RTIASMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEH-LFVVSE  309 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~-l~~~gg  309 (402)
                      ..+............+.  -++.+++.|+.+      ..+..||+....-..+..  ..... ..+.+  ++. +++.|+
T Consensus       154 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~--h~~~v-~~~~~~~~~~~~l~s~~  224 (383)
T 3ei3_B          154 QVFAKTDSWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKL--HKAKV-THAEFNPRCDWLMATSS  224 (383)
T ss_dssp             EEEECCCCSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEEC--SSSCE-EEEEECSSCTTEEEEEE
T ss_pred             EEEeccCCCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEecc--CCCcE-EEEEECCCCCCEEEEEe
Confidence            65543332222222222  266777777653      378899985433222221  11111 12223  444 666666


Q ss_pred             cCCcEEEEEeCCC
Q 040145          310 LERMKLKVYDPST  322 (402)
Q Consensus       310 ~~~~~~~~yd~~~  322 (402)
                      . ...+.+||..+
T Consensus       225 ~-d~~i~iwd~~~  236 (383)
T 3ei3_B          225 V-DATVKLWDLRN  236 (383)
T ss_dssp             T-TSEEEEEEGGG
T ss_pred             C-CCEEEEEeCCC
Confidence            5 45799999876

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.69  E-value=0.3  Score=43.32  Aligned_cols=212  Identities=11%  Similarity=0.085  Sum_probs=114.4

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC----Cceee-cC-CCc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK----NRWTV-MN-KMI  193 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t----~~W~~-~~-~~~  193 (402)
                      .+..+|+.+.....+.+..      ..-.+.+.-..++.||+....       ...++++|+.+    ..-+. ++ .+.
T Consensus        11 ~I~~i~~~~~~~~~~~~~~------~~p~g~~~d~~~~~ly~~D~~-------~~~I~~~~~~g~~~~~~~~~~~~~~~~   77 (316)
T 1ijq_A           11 EVRKMTLDRSEYTSLIPNL------RNVVALDTEVASNRIYWSDLS-------QRMICSTQLDRAHGVSSYDTVISRDIQ   77 (316)
T ss_dssp             SEEEEETTSCCCEEEECSC------SSEEEEEEETTTTEEEEEETT-------TTEEEEEEC--------CEEEECSSCS
T ss_pred             eEEEEECCCcceEehhcCC------CceEEEEEEeCCCEEEEEECC-------CCcEEEEECCCCCCCcccEEEEeCCCC
Confidence            3677888877665542211      022344443346799998643       34799999876    22222 21 111


Q ss_pred             ccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC--CCCCCCcceeEEEE--CCEEEEEcccccCCc
Q 040145          194 TARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA--SMGTNMASYDAAVL--DGKLLVTEGWLWPFF  267 (402)
Q Consensus       194 ~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~  267 (402)
                         ...++++  .++.||+.-..      ...++++|+....-+.+.  .+..+   ...++-  ++.||+.....    
T Consensus        78 ---~p~glavd~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~~----  141 (316)
T 1ijq_A           78 ---APDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT----  141 (316)
T ss_dssp             ---CCCEEEEETTTTEEEEEETT------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECSS----
T ss_pred             ---CcCEEEEeecCCeEEEEECC------CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccCC----
Confidence               2234444  47899998543      567889998765433332  22222   223332  68899875321    


Q ss_pred             cCCcEEEEeCCCCCeeeccccccCCCceeEEE--ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE
Q 040145          268 VSPRGQVYDPSTDNWESMAVGLREGWTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA  345 (402)
Q Consensus       268 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~  345 (402)
                       ...++++++....-..+.. ....+....+.  -+++||+.... ...|+++|++...-..+..  .........++++
T Consensus       142 -~~~I~~~~~dG~~~~~~~~-~~~~~P~gla~d~~~~~lY~~D~~-~~~I~~~d~dg~~~~~~~~--~~~~~~~P~giav  216 (316)
T 1ijq_A          142 -PAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILE--DEKRLAHPFSLAV  216 (316)
T ss_dssp             -SCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEEE--CTTTTSSEEEEEE
T ss_pred             -CCeEEEEcCCCCCeEEEEE-CCCCCceEEEEeccCCEEEEEECC-CCeEEEEecCCCceEEEee--cCCccCCcEEEEE
Confidence             2478999986543333321 11111112222  26889988543 6789999997543333321  1111234567777


Q ss_pred             eCCEEEEEecCceeeeEEEEeccc
Q 040145          346 CDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       346 ~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      .++.||+.--..+    .|..+++
T Consensus       217 ~~~~ly~~d~~~~----~V~~~~~  236 (316)
T 1ijq_A          217 FEDKVFWTDIINE----AIFSANR  236 (316)
T ss_dssp             ETTEEEEEETTTT----EEEEEET
T ss_pred             ECCEEEEEECCCC----eEEEEeC
Confidence            8899999775333    2555554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.69  E-value=0.25  Score=43.62  Aligned_cols=140  Identities=16%  Similarity=0.119  Sum_probs=68.5

Q ss_pred             ceEEEEECC--CCceeecCCCcccccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcCCCCCCCccee
Q 040145          174 DLVLKYEMQ--KNRWTVMNKMITARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGN-WRTIASMGTNMASYD  248 (402)
Q Consensus       174 ~~~~~~d~~--t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~~~  248 (402)
                      ..+.+|+..  +++++.+..++.......++.. ++ .+|+.+..      ...+.+||..++. ...+...........
T Consensus        60 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  133 (343)
T 1ri6_A           60 FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDVVEGLDGCHS  133 (343)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEEECCCTTBCC
T ss_pred             CeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecC------CCeEEEEECCCCccccccccccCCCCceE
Confidence            367787776  7777765544333222333333 33 56666543      3457888874222 222222222111222


Q ss_pred             EEEE-CC-EEEEEcccccCCccCCcEEEEeCCC-CCeeecc--c-cccCCCceeEEEE--CCE-EEEEeccCCcEEEEEe
Q 040145          249 AAVL-DG-KLLVTEGWLWPFFVSPRGQVYDPST-DNWESMA--V-GLREGWTGSSVVV--YEH-LFVVSELERMKLKVYD  319 (402)
Q Consensus       249 ~~~~-~g-~ly~~gG~~~~~~~~~~~~~yd~~~-~~W~~~~--~-~~~~~~~~~~~~~--~~~-l~~~gg~~~~~~~~yd  319 (402)
                      .+.. +| .+|+.+...      ..+.+||+.+ ++...+.  . ..+.......+.+  +++ +|+.+. ....+.+||
T Consensus       134 ~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~-~~~~i~~~~  206 (343)
T 1ri6_A          134 ANISPDNRTLWVPALKQ------DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE-LNSSVDVWE  206 (343)
T ss_dssp             CEECTTSSEEEEEEGGG------TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET-TTTEEEEEE
T ss_pred             EEECCCCCEEEEecCCC------CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC-CCCEEEEEE
Confidence            2222 45 466654221      3689999887 6665432  1 1111111112233  454 665543 356788888


Q ss_pred             CC--CCcee
Q 040145          320 PS--TDSWE  326 (402)
Q Consensus       320 ~~--~~~W~  326 (402)
                      ..  +..+.
T Consensus       207 ~~~~~g~~~  215 (343)
T 1ri6_A          207 LKDPHGNIE  215 (343)
T ss_dssp             SSCTTSCCE
T ss_pred             ecCCCCcEE
Confidence            84  34443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.69  E-value=0.3  Score=43.05  Aligned_cols=220  Identities=11%  Similarity=-0.005  Sum_probs=113.1

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.||+...    ....+++||+.... ......+       ..-...++..++.+|+.....     ....+++||+.+
T Consensus        42 ~g~lyv~d~----~~~~I~~~d~~g~~-~~~~~~~-------~~p~gia~~~dG~l~vad~~~-----~~~~v~~~d~~~  104 (306)
T 2p4o_A           42 DGTIFVTNH----EVGEIVSITPDGNQ-QIHATVE-------GKVSGLAFTSNGDLVATGWNA-----DSIPVVSLVKSD  104 (306)
T ss_dssp             TSCEEEEET----TTTEEEEECTTCCE-EEEEECS-------SEEEEEEECTTSCEEEEEECT-----TSCEEEEEECTT
T ss_pred             CCCEEEEeC----CCCeEEEECCCCce-EEEEeCC-------CCceeEEEcCCCcEEEEeccC-----CcceEEEEcCCC
Confidence            456777752    23357889887643 2221122       112333443467788875321     112588999988


Q ss_pred             CceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCc---EEEcCC----CC-CCCcceeEEEE-C
Q 040145          184 NRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGN---WRTIAS----MG-TNMASYDAAVL-D  253 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~----~~-~~~~~~~~~~~-~  253 (402)
                      ++.+.+...+..+.....+. .++.+|+.-..      ...++++|+.+..   |..-+.    .+ ........... +
T Consensus       105 g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg  178 (306)
T 2p4o_A          105 GTVETLLTLPDAIFLNGITPLSDTQYLTADSY------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG  178 (306)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEETT------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred             CeEEEEEeCCCccccCcccccCCCcEEEEECC------CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCC
Confidence            88776554443333333333 35577776432      4578999987642   221111    11 11112222233 4


Q ss_pred             CEEEEEcccccCCccCCcEEEEeCCC-CCeeecccccc-CCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCC
Q 040145          254 GKLLVTEGWLWPFFVSPRGQVYDPST-DNWESMAVGLR-EGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGP  331 (402)
Q Consensus       254 g~ly~~gG~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~-~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~  331 (402)
                      +.||+.-..      .+.+.+||+.. ++......... ..-.+.++--+|++|+... ..+.|.+||++ .+...+...
T Consensus       179 ~~lyv~d~~------~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~-~~~~V~~~~~~-G~~~~~~~~  250 (306)
T 2p4o_A          179 NFLYVSNTE------KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH-IYNSVVRIAPD-RSTTIIAQA  250 (306)
T ss_dssp             TEEEEEETT------TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB-TTCCEEEECTT-CCEEEEECG
T ss_pred             CEEEEEeCC------CCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeC-CCCeEEEECCC-CCEEEEeec
Confidence            578886532      35799999865 33221111000 1112223334788887743 35689999997 444433322


Q ss_pred             CCCccccCCeEEEEe-----CCEEEEEecC
Q 040145          332 PLPEQICKPFAVNAC-----DCRVYVVGRN  356 (402)
Q Consensus       332 ~~p~~~~~~~~~~~~-----~~~i~v~GG~  356 (402)
                      +.+  .....+++.-     ++.|||....
T Consensus       251 ~~~--~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          251 EQG--VIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             GGT--CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ccc--cCCceEEEEecccCCCCEEEEECCC
Confidence            222  1333455443     2689997753

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.68  E-value=0.23  Score=45.11  Aligned_cols=109  Identities=13%  Similarity=0.019  Sum_probs=56.4

Q ss_pred             CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc-CCCCCC---CcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCC
Q 040145          205 GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI-ASMGTN---MASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPS  278 (402)
Q Consensus       205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~---~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~  278 (402)
                      ++ +++.|+.      ...+.+||..+..-... ......   ......+.+  ++.+++.|+.++.   ...+.+||+.
T Consensus       197 ~~-~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~---~g~i~i~d~~  266 (397)
T 1sq9_A          197 RG-LIATGFN------NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS---FGCITLYETE  266 (397)
T ss_dssp             TS-EEEEECT------TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT---EEEEEEEETT
T ss_pred             Cc-eEEEEeC------CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC---CceEEEEECC
Confidence            45 6666664      45689999987754322 210001   122223333  6677777764310   0268899988


Q ss_pred             CCCeee-ccccc-c---------CCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCc
Q 040145          279 TDNWES-MAVGL-R---------EGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       279 ~~~W~~-~~~~~-~---------~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      +.+-.. +..+. +         ....-..+.+  ++.+++.|+. ...+.+||..+.+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~  324 (397)
T 1sq9_A          267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVKTKE  324 (397)
T ss_dssp             TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-TSEEEEEETTTTE
T ss_pred             CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC-CCeEEEEEcCCCc
Confidence            764221 11100 0         1111112333  5677766665 5689999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.37  Score=43.92  Aligned_cols=154  Identities=12%  Similarity=0.086  Sum_probs=75.5

Q ss_pred             ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEE
Q 040145          148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEV  226 (402)
Q Consensus       148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~  226 (402)
                      ..++.+..++.+++.|+.+       ..+.+||.....-..+..-  ...-.++... ++..++.++.      ...+.+
T Consensus       111 v~~~~~s~~~~~l~~~~~d-------g~i~i~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~------d~~i~i  175 (425)
T 1r5m_A          111 VTCLAWSHDGNSIVTGVEN-------GELRLWNKTGALLNVLNFH--RAPIVSVKWNKDGTHIISMDV------ENVTIL  175 (425)
T ss_dssp             EEEEEECTTSSEEEEEETT-------SCEEEEETTSCEEEEECCC--CSCEEEEEECTTSSEEEEEET------TCCEEE
T ss_pred             eEEEEEcCCCCEEEEEeCC-------CeEEEEeCCCCeeeeccCC--CccEEEEEECCCCCEEEEEec------CCeEEE
Confidence            3444554567777777652       2688899433333333211  1111223332 4555555554      345788


Q ss_pred             EcCCCCcEEEcCCCCCCC--------------cceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccC
Q 040145          227 LDPVKGNWRTIASMGTNM--------------ASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLRE  291 (402)
Q Consensus       227 yd~~t~~W~~~~~~~~~~--------------~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~  291 (402)
                      ||..++.-...-......              ........ ++. +++|+.+      ..+..||+.+++-...-.....
T Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------g~i~~~d~~~~~~~~~~~~~~~  248 (425)
T 1r5m_A          176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPK------GAIFVYQITEKTPTGKLIGHHG  248 (425)
T ss_dssp             EETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEECGG------GCEEEEETTCSSCSEEECCCSS
T ss_pred             EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCC------CeEEEEEcCCCceeeeeccCCC
Confidence            998877643321111111              01122222 444 5555543      3689999987643221111111


Q ss_pred             CCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          292 GWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       292 ~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      .-......-++.+++.|+. ...+.+||..+..
T Consensus       249 ~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~  280 (425)
T 1r5m_A          249 PISVLEFNDTNKLLLSASD-DGTLRIWHGGNGN  280 (425)
T ss_dssp             CEEEEEEETTTTEEEEEET-TSCEEEECSSSBS
T ss_pred             ceEEEEECCCCCEEEEEcC-CCEEEEEECCCCc
Confidence            1111112236666666665 4578999987654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.64  E-value=0.11  Score=50.10  Aligned_cols=148  Identities=11%  Similarity=0.049  Sum_probs=73.7

Q ss_pred             ceEEEEECCCCceee-cCCCc----------ccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCC
Q 040145          174 DLVLKYEMQKNRWTV-MNKMI----------TARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG  241 (402)
Q Consensus       174 ~~~~~~d~~t~~W~~-~~~~~----------~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~  241 (402)
                      +.+.++|..|.+-.. ++...          .++........ +..+|+....      ...+.++|..+..-..+..++
T Consensus       248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~~i~  321 (543)
T 1nir_A          248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTSIG  321 (543)
T ss_dssp             SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEECTTSSSCEEEEEE
T ss_pred             CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------CCeEEEEEecCCCcceeEEec
Confidence            378899998875332 22111          11211112222 3456655432      467888888764311111111


Q ss_pred             CCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCCeeec-cc-cccCCCceeEEEE--CCEEEEEeccCCcEEE
Q 040145          242 TNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM-AV-GLREGWTGSSVVV--YEHLFVVSELERMKLK  316 (402)
Q Consensus       242 ~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~-~~-~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~  316 (402)
                      ..+.-+..+.. +|+.+++++..     .+.+.++|..+++-... +. ..|....+.....  ++.+|+.+..+...|.
T Consensus       322 ~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~  396 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS  396 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEE
T ss_pred             cCcCccCceECCCCCEEEEEecC-----CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEE
Confidence            22222233332 56643333321     24788899998864432 21 1222222222233  3778877654456888


Q ss_pred             EEeCCCC-----ceeecCCCC
Q 040145          317 VYDPSTD-----SWETIEGPP  332 (402)
Q Consensus       317 ~yd~~~~-----~W~~~~~~~  332 (402)
                      ++|.++.     .|+.+..++
T Consensus       397 v~d~~~~~~~~~~~~~v~~l~  417 (543)
T 1nir_A          397 LIGTDPKNHPQYAWKKVAELQ  417 (543)
T ss_dssp             EEECCTTTCTTTBTSEEEEEE
T ss_pred             EEEeCCCCCchhcCeEEEEEE
Confidence            9988762     388776433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.63  E-value=0.71  Score=46.71  Aligned_cols=215  Identities=8%  Similarity=0.122  Sum_probs=114.0

Q ss_pred             EEEeecCCCcEEeCCCCCCCCC--CCCCCceEEEEccCCE-EEEEeCccCCCCCCCceEEEEECCCCceeecCC----Cc
Q 040145          121 WQVLDLTHYCWHTIPAMPCKDK--VCPHGFRCVSIPREGT-LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK----MI  193 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~~~~--~~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~----~~  193 (402)
                      +..||+.++++......+..+.  .......+.....++. |++-. .       ...+++||+.+++++....    ++
T Consensus       379 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt-~-------~~Gl~~~d~~~~~~~~~~~~~~~l~  450 (795)
T 4a2l_A          379 LNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT-H-------AGGLSILHRNSGQVENFNQRNSQLV  450 (795)
T ss_dssp             EEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE-T-------TTEEEEEETTTCCEEEECTTTSCCS
T ss_pred             eEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe-C-------cCceeEEeCCCCcEEEeecCCCCcC
Confidence            7789998888876643220000  0001122223323566 67632 1       1258999999998877643    11


Q ss_pred             ccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCC--CCC--CcceeEEEE--CCEEEEEcccccCC
Q 040145          194 TARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM--GTN--MASYDAAVL--DGKLLVTEGWLWPF  266 (402)
Q Consensus       194 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~--~~~--~~~~~~~~~--~g~ly~~gG~~~~~  266 (402)
                      .. .-.++.. -++.|++...        ..+.+||+.+++|+.....  +..  .........  +|.|++...     
T Consensus       451 ~~-~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-----  516 (795)
T 4a2l_A          451 NE-NVYAILPDGEGNLWLGTL--------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-----  516 (795)
T ss_dssp             CS-CEEEEEECSSSCEEEEES--------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-----
T ss_pred             CC-eeEEEEECCCCCEEEEec--------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-----
Confidence            11 1122222 2467766542        3478999999999887533  111  111222222  577777432     


Q ss_pred             ccCCcEEEEeCCCCCeeeccc-----cccCCCceeEEE-ECCEEEEEeccCCcEEEEEeCCCCceeecCCC-CCCccccC
Q 040145          267 FVSPRGQVYDPSTDNWESMAV-----GLREGWTGSSVV-VYEHLFVVSELERMKLKVYDPSTDSWETIEGP-PLPEQICK  339 (402)
Q Consensus       267 ~~~~~~~~yd~~~~~W~~~~~-----~~~~~~~~~~~~-~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~-~~p~~~~~  339 (402)
                         ..+.+||+.++++ .+..     ..+.......+. -+|.|++...  . .+.+||+++++++..... .+|..  .
T Consensus       517 ---~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--~-Gl~~~d~~~~~~~~~~~~~gl~~~--~  587 (795)
T 4a2l_A          517 ---EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--E-GFYCFNEKDKQIKRYNTTNGLPNN--V  587 (795)
T ss_dssp             ---SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--S-CEEEEETTTTEEEEECGGGTCSCS--C
T ss_pred             ---CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--C-CceeECCCCCcEEEeCCCCCCchh--h
Confidence               2588999988877 4321     111111111122 2577876432  2 689999999988765421 24421  1


Q ss_pred             CeEEEE-eCCEEEEEecCceeeeEEEEecccccc
Q 040145          340 PFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       340 ~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                      ..+++. .+|.|++.+..      -+..|+|..+
T Consensus       588 i~~i~~d~~g~lWi~t~~------Gl~~~~~~~~  615 (795)
T 4a2l_A          588 VYGILEDSFGRLWLSTNR------GISCFNPETE  615 (795)
T ss_dssp             EEEEEECTTSCEEEEETT------EEEEEETTTT
T ss_pred             eEEEEECCCCCEEEEcCC------ceEEEcCCCC
Confidence            223333 35788887642      2566776544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.35  Score=43.02  Aligned_cols=215  Identities=11%  Similarity=0.096  Sum_probs=98.2

Q ss_pred             EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC-----ceeecCCCccc
Q 040145          121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN-----RWTVMNKMITA  195 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~-----~W~~~~~~~~~  195 (402)
                      +.+||........+..+....  ......++....++.+++.|+.+       ..+.+||..+.     .+..+..+...
T Consensus        36 i~lw~~~~~~~~~~~~~~~~~--h~~~v~~v~~sp~~~~las~s~D-------~~v~iw~~~~~~~~~~~~~~~~~~~~h  106 (330)
T 2hes_X           36 IKLVSVKYDDFTLIDVLDETA--HKKAIRSVAWRPHTSLLAAGSFD-------STVSIWAKEESADRTFEMDLLAIIEGH  106 (330)
T ss_dssp             EEEEECSSSCCEEEEEECTTC--CCSCEEEEEECTTSSEEEEEETT-------SCEEEEEC-------CCCEEEEEEC--
T ss_pred             EEEEEecCCCeEEEEEEecCC--ccCCEEEEEECCCCCEEEEEeCC-------CcEEEEEcccCcCccccceeEEEEcCC
Confidence            677787765433222121000  01223444554567777887763       26888887532     12222111111


Q ss_pred             cc-ceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCC--CcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccC
Q 040145          196 RS-FFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVK--GNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVS  269 (402)
Q Consensus       196 r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~  269 (402)
                      .. -.+++.. +++.++.|+.      -..+.+||..+  ..++.+..+.........+.+  ++.+++.|+.+      
T Consensus       107 ~~~V~~v~~sp~g~~las~s~------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D------  174 (330)
T 2hes_X          107 ENEVKGVAWSNDGYYLATCSR------DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD------  174 (330)
T ss_dssp             --CEEEEEECTTSCEEEEEET------TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT------
T ss_pred             CCcEEEEEECCCCCEEEEEeC------CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC------
Confidence            11 1122222 4666677765      34578888843  234433323222222233333  56777777754      


Q ss_pred             CcEEEEeCCCCCeeeccccccCCCceeEEEE--C--CEEEEEeccCCcEEEEEeCCC------CceeecCCCCCCc-ccc
Q 040145          270 PRGQVYDPSTDNWESMAVGLREGWTGSSVVV--Y--EHLFVVSELERMKLKVYDPST------DSWETIEGPPLPE-QIC  338 (402)
Q Consensus       270 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~--~~l~~~gg~~~~~~~~yd~~~------~~W~~~~~~~~p~-~~~  338 (402)
                      ..+..||..++.|..+.........-..+.+  +  +..++.|+. ...+.+||..+      ..|..+..  ++. ...
T Consensus       175 ~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-D~~v~iw~~~~~~~~~~~~~~~~~~--~~~~h~~  251 (330)
T 2hes_X          175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-DSTVRVWKYMGDDEDDQQEWVCEAI--LPDVHKR  251 (330)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-TSCEEEEEEEEECTTSCEEEEEEEE--CCSCCSS
T ss_pred             CeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-CCeEEEEEecCCCccccceeEEeee--ccccccc
Confidence            3678888877767655431111111112233  2  345555555 34566666543      23554432  221 112


Q ss_pred             CCeEEEEeCCEEEEEecCcee
Q 040145          339 KPFAVNACDCRVYVVGRNLHV  359 (402)
Q Consensus       339 ~~~~~~~~~~~i~v~GG~~~~  359 (402)
                      .-.+++...+.+++.||.++.
T Consensus       252 ~v~~v~~s~~~~l~s~~~dg~  272 (330)
T 2hes_X          252 QVYNVAWGFNGLIASVGADGV  272 (330)
T ss_dssp             CEEEEEECTTSCEEEEETTSC
T ss_pred             ceEEEEEcCCCEEEEEeCCCE
Confidence            222344444556666665543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=96.62  E-value=0.093  Score=50.94  Aligned_cols=190  Identities=11%  Similarity=0.002  Sum_probs=92.3

Q ss_pred             ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCce-eecCCCcccccceEEEEE-CCE-EEEEcCCCCCCCCCCee
Q 040145          148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRW-TVMNKMITARSFFASGVI-GGM-IYVAGGSSADLFELDSA  224 (402)
Q Consensus       148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W-~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~  224 (402)
                      ...+.+..++..++.++.+.+   ....+++||  +++- ..+..  ....-.++... ++. +++.|+.      ...+
T Consensus       119 v~~~~~s~~~~~l~~~~~~~~---~~~~v~~~d--~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~------d~~v  185 (615)
T 1pgu_A          119 ISDISWDFEGRRLCVVGEGRD---NFGVFISWD--SGNSLGEVSG--HSQRINACHLKQSRPMRSMTVGD------DGSV  185 (615)
T ss_dssp             EEEEEECTTSSEEEEEECCSS---CSEEEEETT--TCCEEEECCS--CSSCEEEEEECSSSSCEEEEEET------TTEE
T ss_pred             EEEEEEeCCCCEEEEeccCCC---CccEEEEEE--CCCcceeeec--CCccEEEEEECCCCCcEEEEEeC------CCcE
Confidence            344455456666666665322   245777787  3321 11211  11111222332 232 6666665      4578


Q ss_pred             EEEcCCCCcEEEcCCCCCCCc---ceeEEEE--C-CEEEEEcccccCCccCCcEEEEeCCCCCeeecc-ccc-cCCCcee
Q 040145          225 EVLDPVKGNWRTIASMGTNMA---SYDAAVL--D-GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMA-VGL-REGWTGS  296 (402)
Q Consensus       225 ~~yd~~t~~W~~~~~~~~~~~---~~~~~~~--~-g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~-~~~-~~~~~~~  296 (402)
                      .+||..+.+-..  .+.....   ....+.+  + +.+++.|+.+      ..+.+||+.+++-...- ... .....-.
T Consensus       186 ~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~  257 (615)
T 1pgu_A          186 VFYQGPPFKFSA--SDRTHHKQGSFVRDVEFSPDSGEFVITVGSD------RKISCFDGKSGEFLKYIEDDQEPVQGGIF  257 (615)
T ss_dssp             EEEETTTBEEEE--EECSSSCTTCCEEEEEECSTTCCEEEEEETT------CCEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred             EEEeCCCcceee--eecccCCCCceEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCEeEEecccccccCCceE
Confidence            899987755322  2222211   2223333  5 6777777653      36899999876643221 100 1111111


Q ss_pred             EEEE-CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145          297 SVVV-YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV  359 (402)
Q Consensus       297 ~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~  359 (402)
                      .+.+ ++..++.++. ...+.+||..+.+-...-............++...++..++.|+.+..
T Consensus       258 ~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  320 (615)
T 1pgu_A          258 ALSWLDSQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT  320 (615)
T ss_dssp             EEEESSSSEEEEEET-TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSC
T ss_pred             EEEEcCCCEEEEEcC-CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCC
Confidence            2222 7777777775 467999999876543322111000111222333346667777765443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.61  E-value=0.55  Score=45.23  Aligned_cols=231  Identities=7%  Similarity=-0.072  Sum_probs=110.0

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEEC--
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEM--  181 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~--  181 (402)
                      ++.+|+.+..    ...+.++|..+.+-...-...  .    ..+..+....+..+|+.+..        +.+.+||.  
T Consensus       148 ~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g--~----~~~~v~~spdg~~l~v~~~d--------~~V~v~D~~~  209 (543)
T 1nir_A          148 PNLFSVTLRD----AGQIALVDGDSKKIVKVIDTG--Y----AVHISRMSASGRYLLVIGRD--------ARIDMIDLWA  209 (543)
T ss_dssp             GGEEEEEEGG----GTEEEEEETTTCCEEEEEECS--T----TEEEEEECTTSCEEEEEETT--------SEEEEEETTS
T ss_pred             CCEEEEEEcC----CCeEEEEECCCceEEEEEecC--c----ccceEEECCCCCEEEEECCC--------CeEEEEECcC
Confidence            4567766533    234778899887643221111  1    12333333233456665431        47999999  


Q ss_pred             CCCceeecCCCcccccceEEEEE-----CC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEE-cCC--CCC------CCcc
Q 040145          182 QKNRWTVMNKMITARSFFASGVI-----GG-MIYVAGGSSADLFELDSAEVLDPVKGNWRT-IAS--MGT------NMAS  246 (402)
Q Consensus       182 ~t~~W~~~~~~~~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~--~~~------~~~~  246 (402)
                      .|++-  +..++.......+++.     ++ .+|+....      ...+.++|..+.+-.. ++.  +..      +...
T Consensus       210 ~t~~~--~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~  281 (543)
T 1nir_A          210 KEPTK--VAEIKIGIEARSVESSKFKGYEDRYTIAGAYW------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR  281 (543)
T ss_dssp             SSCEE--EEEEECCSEEEEEEECCSTTCTTTEEEEEEEE------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred             CCCcE--EEEEecCCCcceEEeCCCcCCCCCEEEEEEcc------CCeEEEEeccccccceeecccCcccCccccccCCc
Confidence            66542  2233333333444443     44 45555422      4568889988765322 211  100      0001


Q ss_pred             eeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCc--eeEEEECCEEEEEeccCCcEEEEEeCC
Q 040145          247 YDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWT--GSSVVVYEHLFVVSELERMKLKVYDPS  321 (402)
Q Consensus       247 ~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~--~~~~~~~~~l~~~gg~~~~~~~~yd~~  321 (402)
                      ...+..   ++.+|+....      ...+..+|..+.+-..+.. .+....  .....-+|+.+++++...+.+.++|.+
T Consensus       282 v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~~-i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~  354 (543)
T 1nir_A          282 VAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTS-IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK  354 (543)
T ss_dssp             EEEEEECSSSSEEEEEETT------TTEEEEEECTTSSSCEEEE-EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             eEEEEECCCCCEEEEEECC------CCeEEEEEecCCCcceeEE-eccCcCccCceECCCCCEEEEEecCCCeEEEEECC
Confidence            122222   3445554332      2478889987654222111 111111  112223566444555446789999999


Q ss_pred             CCceeec-CCCCCCccccCCeEEEEe-CCEEEEEecCceeeeEEEEeccc
Q 040145          322 TDSWETI-EGPPLPEQICKPFAVNAC-DCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       322 ~~~W~~~-~~~~~p~~~~~~~~~~~~-~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      +.+-... ..-..|.. ......... ++.+|+.+.... ....++..++
T Consensus       355 tg~l~~~i~~g~~ph~-g~g~~~~~p~~g~~~~s~~~~d-~~V~v~d~~~  402 (543)
T 1nir_A          355 DRRLSALVDVGKTPHP-GRGANFVHPKYGPVWSTSHLGD-GSISLIGTDP  402 (543)
T ss_dssp             TTEEEEEEECSSSBCC-TTCEEEEETTTEEEEEEEBSSS-SEEEEEECCT
T ss_pred             CCeEEEeeccCCCCCC-CCCcccCCCCCccEEEeccCCC-ceEEEEEeCC
Confidence            8864432 21122321 122233223 377888764221 1244555554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.59  E-value=0.36  Score=42.78  Aligned_cols=192  Identities=16%  Similarity=0.049  Sum_probs=100.5

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccc---ccceEEEE-E-CCEEEEEcCCCCC-----------CC
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITA---RSFFASGV-I-GGMIYVAGGSSAD-----------LF  219 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~---r~~~~~~~-~-~~~iyv~GG~~~~-----------~~  219 (402)
                      ++.||+....        ..+.+||+.++..+.+......   .....+++ - ++.||+.-.....           ..
T Consensus        91 ~g~l~v~d~~--------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~  162 (322)
T 2fp8_A           91 NNQLYIVDCY--------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD  162 (322)
T ss_dssp             TTEEEEEETT--------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred             CCcEEEEECC--------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccC
Confidence            6889987432        2488999987765554321111   11223333 2 5788887432110           01


Q ss_pred             CCCeeEEEcCCCCcEEEcC-CCCCCCcceeEEEE-CC-EEEEEcccccCCccCCcEEEEeCCCC---CeeeccccccCCC
Q 040145          220 ELDSAEVLDPVKGNWRTIA-SMGTNMASYDAAVL-DG-KLLVTEGWLWPFFVSPRGQVYDPSTD---NWESMAVGLREGW  293 (402)
Q Consensus       220 ~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~~-~g-~ly~~gG~~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~~~  293 (402)
                      ....+++||+.++..+.+. .+..+   ...+.- +| .||+.-..      .+.+.+||+...   ..+.+.. .+. -
T Consensus       163 ~~g~v~~~d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~-~~g-P  231 (322)
T 2fp8_A          163 KTGRLIKYDPSTKETTLLLKELHVP---GGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVK-IPN-P  231 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEEEEESCC---CEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEE-CSS-E
T ss_pred             CCceEEEEeCCCCEEEEeccCCccC---cceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEe-CCC-C
Confidence            1356899999888765442 11111   122222 44 48876432      247899998753   3333322 221 1


Q ss_pred             ceeEEEECCEEEEEecc---------CCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEE
Q 040145          294 TGSSVVVYEHLFVVSEL---------ERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHI  364 (402)
Q Consensus       294 ~~~~~~~~~~l~~~gg~---------~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v  364 (402)
                      .+.++--+|.||+....         ....+.+||++...-..+.. +-........+++..+++|||.+...+.    |
T Consensus       232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~-~~g~~~~~~~~~~~~~g~L~v~~~~~~~----i  306 (322)
T 2fp8_A          232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL-PPPFAGEHFEQIQEHDGLLYIGTLFHGS----V  306 (322)
T ss_dssp             EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC-CTTTTTSCCCEEEEETTEEEEECSSCSE----E
T ss_pred             CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEEC-CCCCccccceEEEEeCCEEEEeecCCCc----e
Confidence            12222236788887533         13579999997654444432 1111113344555678999988654333    6


Q ss_pred             Eeccccc
Q 040145          365 TRLSTSE  371 (402)
Q Consensus       365 ~~~~~~~  371 (402)
                      ..|++..
T Consensus       307 ~~~~~~~  313 (322)
T 2fp8_A          307 GILVYDK  313 (322)
T ss_dssp             EEEEC--
T ss_pred             EEEeccc
Confidence            6666543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.58  E-value=0.44  Score=48.26  Aligned_cols=205  Identities=10%  Similarity=0.114  Sum_probs=110.2

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC----ccc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM----ITA  195 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~----~~~  195 (402)
                      -+++||+.++++..+.......  ......+.....++.|++-..         ..+++||+.+++|+.....    ...
T Consensus       428 Gl~~~d~~~~~~~~~~~~~~~l--~~~~v~~i~~d~~g~lwigt~---------~Gl~~~~~~~~~~~~~~~~~~~~~~~  496 (795)
T 4a2l_A          428 GLSILHRNSGQVENFNQRNSQL--VNENVYAILPDGEGNLWLGTL---------SALVRFNPEQRSFTTIEKEKDGTPVV  496 (795)
T ss_dssp             EEEEEETTTCCEEEECTTTSCC--SCSCEEEEEECSSSCEEEEES---------SCEEEEETTTTEEEECCBCTTCCBCC
T ss_pred             ceeEEeCCCCcEEEeecCCCCc--CCCeeEEEEECCCCCEEEEec---------CceeEEeCCCCeEEEccccccccccC
Confidence            3788999988877764321110  011222333323567777542         2589999999999876532    111


Q ss_pred             ccc-eEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCC---C-CCCcceeEEEE--CCEEEEEcccccCCc
Q 040145          196 RSF-FASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM---G-TNMASYDAAVL--DGKLLVTEGWLWPFF  267 (402)
Q Consensus       196 r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~-~~~~~~~~~~~--~g~ly~~gG~~~~~~  267 (402)
                      ... .++.. -++.|++...        ..+.+||+.++.+ .....   . .+.....+...  +|.|++...      
T Consensus       497 ~~~i~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~------  561 (795)
T 4a2l_A          497 SKQITTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR------  561 (795)
T ss_dssp             CCCEEEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES------
T ss_pred             CceEEEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC------
Confidence            111 12222 2567777542        3478899988887 43211   1 11111222232  577776432      


Q ss_pred             cCCcEEEEeCCCCCeeeccc--cccCCCceeEEE-ECCEEEEEeccCCcEEEEEeCCCCceeecCCC-CCCccccCCeEE
Q 040145          268 VSPRGQVYDPSTDNWESMAV--GLREGWTGSSVV-VYEHLFVVSELERMKLKVYDPSTDSWETIEGP-PLPEQICKPFAV  343 (402)
Q Consensus       268 ~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~~~-~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~-~~p~~~~~~~~~  343 (402)
                        ..+.+||+.++++.....  .++.......+. -+|.|++.+.   ..+.+||++++++...... .++...-...++
T Consensus       562 --~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~---~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~  636 (795)
T 4a2l_A          562 --EGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN---RGISCFNPETEKFRNFTESDGLQSNQFNTASY  636 (795)
T ss_dssp             --SCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEET---TEEEEEETTTTEEEEECGGGTCSCSCEEEEEE
T ss_pred             --CCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEcC---CceEEEcCCCCcEEEcCCcCCCccccCccCce
Confidence              258999999998876543  233322222222 2578887643   4689999999988765421 233211111233


Q ss_pred             EE-eCCEEEEEec
Q 040145          344 NA-CDCRVYVVGR  355 (402)
Q Consensus       344 ~~-~~~~i~v~GG  355 (402)
                      +. .+|+||+-|-
T Consensus       637 ~~~~~G~l~~g~~  649 (795)
T 4a2l_A          637 CRTSVGQMYFGGI  649 (795)
T ss_dssp             EECTTSCEEEEET
T ss_pred             eECCCCeEEEecC
Confidence            33 4677776543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.58  E-value=0.26  Score=49.67  Aligned_cols=182  Identities=12%  Similarity=0.040  Sum_probs=94.5

Q ss_pred             EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC------Ccee---e---
Q 040145          121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK------NRWT---V---  188 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t------~~W~---~---  188 (402)
                      +.+||+.++++..................+.....++.|++-.-        ..-+++||+.+      ..+.   .   
T Consensus       394 L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~--------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~  465 (758)
T 3ott_A          394 INRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTC--------LGGIFVVDKHKLMQSTSGQYIAEQNYSV  465 (758)
T ss_dssp             EEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEES--------SSCEEEEEHHHHHHCCSSEEECSEEECG
T ss_pred             HhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEEC--------CCceEEEccccccccCCcceeccccccc
Confidence            67899998888765321110000001122233324578887431        11478888764      1221   1   


Q ss_pred             cCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCC-CcceeEEEE--CCEEEEEccccc
Q 040145          189 MNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTN-MASYDAAVL--DGKLLVTEGWLW  264 (402)
Q Consensus       189 ~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-~~~~~~~~~--~g~ly~~gG~~~  264 (402)
                      ...++... -.++.. -++.|++++|.      ...+.+||+.+++++....-... .....+...  +|.|++-. .  
T Consensus       466 ~~~l~~~~-i~~i~~d~~g~lWi~~~t------~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~--  535 (758)
T 3ott_A          466 HNGLSGMF-INQIIPDNEGNVWVLLYN------NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-H--  535 (758)
T ss_dssp             GGTCSCSC-EEEEEECTTSCEEEEETT------CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-T--
T ss_pred             ccccccce-eeeEEEcCCCCEEEEccC------CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-c--
Confidence            11122111 112221 25788886665      34588999999998876321111 112223333  57787632 1  


Q ss_pred             CCccCCcEEEEeCCCCCeeeccc-cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145          265 PFFVSPRGQVYDPSTDNWESMAV-GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETI  328 (402)
Q Consensus       265 ~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~  328 (402)
                           ..+.+||+.++++..... .++.......+.-+|.|++...   ..+.+||+++.+....
T Consensus       536 -----~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~~g~lWi~t~---~Gl~~~~~~~~~~~~~  592 (758)
T 3ott_A          536 -----GGVMRINPKDESQQSISFGSFSNNEILSMTCVKNSIWVSTT---NGLWIIDRKTMDARQQ  592 (758)
T ss_dssp             -----TEEEEECC--CCCCBCCCCC---CCEEEEEEETTEEEEEES---SCEEEEETTTCCEEEC
T ss_pred             -----CceEEEecCCCceEEecccCCCccceEEEEECCCCEEEECC---CCeEEEcCCCceeEEe
Confidence                 268999999988876532 2332222222344788887543   3589999999877654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.57  E-value=0.27  Score=44.32  Aligned_cols=181  Identities=14%  Similarity=0.119  Sum_probs=91.2

Q ss_pred             EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-eEEEEE---CCEEEEEcCCCCCCCCCCeeE
Q 040145          150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF-FASGVI---GGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ++....++..++.|+.+       ..+.+||..+++-...  +...... .++...   ++..++.|+.      -..+.
T Consensus       159 ~~~~~~~~~~l~t~s~D-------~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~------Dg~v~  223 (354)
T 2pbi_B          159 ACSFTNSDMQILTASGD-------GTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGC------DKKAM  223 (354)
T ss_dssp             EEEECSSSSEEEEEETT-------SEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEET------TSCEE
T ss_pred             EEEEeCCCCEEEEEeCC-------CcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeC------CCeEE
Confidence            34443455555555542       3788999988763321  1111111 112221   3467777776      34688


Q ss_pred             EEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCcee-EEE--E
Q 040145          226 VLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGS-SVV--V  300 (402)
Q Consensus       226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~--~  300 (402)
                      +||..+++....  +........++.+  ++.+++.|+.+      ..+..||+.++.-..+-. ........ .+.  .
T Consensus       224 ~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~D------~~v~lwd~~~~~~~~~~~-~~~~~~~~~~~~~s~  294 (354)
T 2pbi_B          224 VWDMRSGQCVQA--FETHESDVNSVRYYPSGDAFASGSDD------ATCRLYDLRADREVAIYS-KESIIFGASSVDFSL  294 (354)
T ss_dssp             EEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEEC-CTTCCSCEEEEEECT
T ss_pred             EEECCCCcEEEE--ecCCCCCeEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEc-CCCcccceeEEEEeC
Confidence            999988764332  1111122223333  56777777753      368889987754221111 11111111 222  2


Q ss_pred             CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCcee
Q 040145          301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHV  359 (402)
Q Consensus       301 ~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~  359 (402)
                      ++.+++.|+. ...+.+||..+..  .+.  .+......-.++. ..+++.++.|+.++.
T Consensus       295 ~g~~l~~g~~-d~~i~vwd~~~~~--~~~--~l~~h~~~v~~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          295 SGRLLFAGYN-DYTINVWDVLKGS--RVS--ILFGHENRVSTLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             TSSEEEEEET-TSCEEEEETTTCS--EEE--EECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             CCCEEEEEEC-CCcEEEEECCCCc--eEE--EEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence            5777777665 5679999986654  221  1111101112222 357778888876554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.57  E-value=0.17  Score=46.38  Aligned_cols=159  Identities=9%  Similarity=0.111  Sum_probs=78.0

Q ss_pred             eEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCC-CcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeE
Q 040145          149 RCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK-MITARSFFASGVI-GGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       149 ~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~-~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      .++....++ .+++.|+.+       ..+.+||..+++....-. ......-.+++.. ++..++.|+.      ...+.
T Consensus       135 ~~~~~~p~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~  201 (402)
T 2aq5_A          135 GIVAWHPTAQNVLLSAGCD-------NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR------DKRVR  201 (402)
T ss_dssp             EEEEECSSBTTEEEEEETT-------SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET------TSEEE
T ss_pred             EEEEECcCCCCEEEEEcCC-------CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec------CCcEE
Confidence            334443344 577777652       269999998876433210 1111122233332 5666666665      45789


Q ss_pred             EEcCCCCcEEEcC--CCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCe--eeccccccCCCceeEEEEC
Q 040145          226 VLDPVKGNWRTIA--SMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNW--ESMAVGLREGWTGSSVVVY  301 (402)
Q Consensus       226 ~yd~~t~~W~~~~--~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W--~~~~~~~~~~~~~~~~~~~  301 (402)
                      +||+.++.-...-  .............-++++++.|....   ....+.+||..+..-  .................-+
T Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  278 (402)
T 2aq5_A          202 VIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM---SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD  278 (402)
T ss_dssp             EEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT---CCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT
T ss_pred             EEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC---CCceEEEEcCccccCCceEEeccCCCceeEEEEcCC
Confidence            9999887643221  11111111122223778777762110   123788999877542  1111101111111111224


Q ss_pred             CE-EEEEeccCCcEEEEEeCCCCc
Q 040145          302 EH-LFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       302 ~~-l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      +. +++.|+. ...+.+||..+.+
T Consensus       279 ~~~l~~~g~~-dg~i~i~d~~~~~  301 (402)
T 2aq5_A          279 TNIVYLCGKG-DSSIRYFEITSEA  301 (402)
T ss_dssp             TTEEEEEETT-CSCEEEEEECSST
T ss_pred             CCEEEEEEcC-CCeEEEEEecCCC
Confidence            44 4455543 4578888887765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.57  E-value=0.21  Score=45.12  Aligned_cols=153  Identities=14%  Similarity=0.074  Sum_probs=72.7

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc---cccceEEEEE-CCEEEEEcCCCCCCCCCCee
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT---ARSFFASGVI-GGMIYVAGGSSADLFELDSA  224 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~---~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~  224 (402)
                      .+++...++.+++. +.  +     ..+.+||..+++-........   ...-.+++.. +++.++.|+.      ...+
T Consensus        98 ~~~~~s~d~~~l~~-s~--d-----g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~------dg~v  163 (357)
T 4g56_B           98 TDVAWVSEKGILVA-SD--S-----GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK------DFSV  163 (357)
T ss_dssp             EEEEEETTTEEEEE-ET--T-----SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET------TSCE
T ss_pred             EEEEEcCCCCEEEE-EC--C-----CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC------CCeE
Confidence            34444456666654 33  1     268899988775333222111   1111223332 5666777765      3458


Q ss_pred             EEEcCCCCcEEEcCCCCCCCcceeEEEE--CC-EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-
Q 040145          225 EVLDPVKGNWRTIASMGTNMASYDAAVL--DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-  300 (402)
Q Consensus       225 ~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-  300 (402)
                      .+||..+++-...  +.........+.+  ++ .+++.++.+      ..+.+||+.+.+-..............++.+ 
T Consensus       164 ~iwd~~~~~~~~~--~~~h~~~v~~v~~s~~~~~~~~s~~~d------g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~s  235 (357)
T 4g56_B          164 KVWDLSQKAVLKS--YNAHSSEVNCVAACPGKDTIFLSCGED------GRILLWDTRKPKPATRIDFCASDTIPTSVTWH  235 (357)
T ss_dssp             EEEETTTTEEEEE--ECCCSSCEEEEEECTTCSSCEEEEETT------SCEEECCTTSSSCBCBCCCTTCCSCEEEEEEC
T ss_pred             EEEECCCCcEEEE--EcCCCCCEEEEEEccCCCceeeeeccC------CceEEEECCCCceeeeeeeccccccccchhhh
Confidence            8999988764322  2221222222222  33 466666643      3688899887653322111111111122333 


Q ss_pred             --CCEEEEEeccCCcEEEEEeCCCCc
Q 040145          301 --YEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       301 --~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                        ++.+++.|+. ...+.+||..+.+
T Consensus       236 p~~~~~la~g~~-d~~i~~wd~~~~~  260 (357)
T 4g56_B          236 PEKDDTFACGDE-TGNVSLVNIKNPD  260 (357)
T ss_dssp             TTSTTEEEEEES-SSCEEEEESSCGG
T ss_pred             hcccceEEEeec-ccceeEEECCCCc
Confidence              4567777665 4578999987653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.56  E-value=0.2  Score=44.69  Aligned_cols=215  Identities=12%  Similarity=0.047  Sum_probs=107.0

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+|+.+..    ...+++||+.+++...+. .+       ......+...++.+++...         ..+++||+.+
T Consensus        60 ~~~l~~~d~~----~~~i~~~d~~~~~~~~~~-~~-------~~v~~i~~~~dg~l~v~~~---------~gl~~~d~~~  118 (326)
T 2ghs_A           60 SGTAWWFNIL----ERELHELHLASGRKTVHA-LP-------FMGSALAKISDSKQLIASD---------DGLFLRDTAT  118 (326)
T ss_dssp             TTEEEEEEGG----GTEEEEEETTTTEEEEEE-CS-------SCEEEEEEEETTEEEEEET---------TEEEEEETTT
T ss_pred             CCEEEEEECC----CCEEEEEECCCCcEEEEE-CC-------CcceEEEEeCCCeEEEEEC---------CCEEEEECCC
Confidence            4667777533    235889999887655432 22       1123333334788887642         1599999999


Q ss_pred             CceeecCCCccc----ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CC-EE
Q 040145          184 NRWTVMNKMITA----RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DG-KL  256 (402)
Q Consensus       184 ~~W~~~~~~~~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g-~l  256 (402)
                      ++.+.+......    +.......-++++|+.............+++||  +++.+.+..   .........+  +| .+
T Consensus       119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~---~~~~~~~i~~s~dg~~l  193 (326)
T 2ghs_A          119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA---DISIPNSICFSPDGTTG  193 (326)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE---EESSEEEEEECTTSCEE
T ss_pred             CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC---CCcccCCeEEcCCCCEE
Confidence            988765433211    111111222567776432111111245788888  455554321   0011122222  45 57


Q ss_pred             EEEcccccCCccCCcEEEEeCC--CC-Ceee---ccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145          257 LVTEGWLWPFFVSPRGQVYDPS--TD-NWES---MAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETI  328 (402)
Q Consensus       257 y~~gG~~~~~~~~~~~~~yd~~--~~-~W~~---~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~  328 (402)
                      |+....      ...+++||..  ++ ....   +............+.+  +|.+|+... ....+.+||+....-..+
T Consensus       194 yv~~~~------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d~~g~~~~~i  266 (326)
T 2ghs_A          194 YFVDTK------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYDTDGNHIARY  266 (326)
T ss_dssp             EEEETT------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEECTTCCEEEEE
T ss_pred             EEEECC------CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEECCCCCEEEEE
Confidence            776432      2478899875  44 3211   1100000111112333  678887642 245799999965443444


Q ss_pred             CCCCCCccccCCeEEEEe--C-CEEEEEecC
Q 040145          329 EGPPLPEQICKPFAVNAC--D-CRVYVVGRN  356 (402)
Q Consensus       329 ~~~~~p~~~~~~~~~~~~--~-~~i~v~GG~  356 (402)
                      .   +|.  ....+++..  + +.|||....
T Consensus       267 ~---~~~--~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          267 E---VPG--KQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             E---CSC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred             E---CCC--CCcEEEEEecCCCCEEEEEecC
Confidence            3   332  122333332  2 468776653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.54  E-value=0.4  Score=42.77  Aligned_cols=236  Identities=11%  Similarity=0.091  Sum_probs=114.5

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      .+.+|++|. .  .  .++...-.-.+|+.+.......   ...+..+.+ .++.+|+.|..        ..+++-+=.-
T Consensus        46 ~~~~~~~G~-~--g--~i~~s~DgG~tW~~~~~~~~~~---~~~~~~i~~-~~~~~~~~g~~--------g~i~~S~DgG  108 (327)
T 2xbg_A           46 RHHGWLVGV-N--A--TLMETRDGGQTWEPRTLVLDHS---DYRFNSVSF-QGNEGWIVGEP--------PIMLHTTDGG  108 (327)
T ss_dssp             SSCEEEEET-T--T--EEEEESSTTSSCEECCCCCSCC---CCEEEEEEE-ETTEEEEEEET--------TEEEEESSTT
T ss_pred             CCcEEEEcC-C--C--eEEEeCCCCCCCeECCCCCCCC---CccEEEEEe-cCCeEEEEECC--------CeEEEECCCC
Confidence            455666542 1  1  1333333345799875321011   122344444 36788887532        1344422223


Q ss_pred             CceeecCCCc-ccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEc
Q 040145          184 NRWTVMNKMI-TARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTE  260 (402)
Q Consensus       184 ~~W~~~~~~~-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~g  260 (402)
                      .+|+.+.... .+-....++. -++.+|+.+..       ..++.-+=.-.+|+.+..... ...+..+.. ++.+|++|
T Consensus       109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------g~v~~S~DgG~tW~~~~~~~~-~~~~~~~~~~~~~~~~~g  180 (327)
T 2xbg_A          109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMITNV-------GAIYRTKDSGKNWQALVQEAI-GVMRNLNRSPSGEYVAVS  180 (327)
T ss_dssp             SSCEECCCCTTCSSCEEEEEEEETTEEEEEETT-------CCEEEESSTTSSEEEEECSCC-CCEEEEEECTTSCEEEEE
T ss_pred             CCceECccccCCCCCeEEEEEECCCCEEEEeCC-------ccEEEEcCCCCCCEEeecCCC-cceEEEEEcCCCcEEEEE
Confidence            5899876421 1222233333 46788887742       123333223457998754322 222333333 56777665


Q ss_pred             ccccCCccCCcEEEEe-CCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCC-CCceeecCCCCCCcccc
Q 040145          261 GWLWPFFVSPRGQVYD-PSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPS-TDSWETIEGPPLPEQIC  338 (402)
Q Consensus       261 G~~~~~~~~~~~~~yd-~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~-~~~W~~~~~~~~p~~~~  338 (402)
                      ...       .++.-+ ....+|+.+..+.+.........-++.+|+++..  ..++..+.+ ..+|+.+....++.. .
T Consensus       181 ~~G-------~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~--G~~~~s~~D~G~tW~~~~~~~~~~~-~  250 (327)
T 2xbg_A          181 SRG-------SFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNG--GKIAFSDPDNSENWGELLSPLRRNS-V  250 (327)
T ss_dssp             TTS-------SEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETT--TEEEEEETTEEEEECCCBCTTSSCC-S
T ss_pred             CCC-------cEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCC--ceEEEecCCCCCeeEeccCCcccCC-c
Confidence            321       344443 3357899886432222221112236788877643  246555433 568998763213321 1


Q ss_pred             CCeEEEE-eCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeC
Q 040145          339 KPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDA  385 (402)
Q Consensus       339 ~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~  385 (402)
                      ..+++.. .++.+|++|+..     .++.-...-      .+|+.+..
T Consensus       251 ~~~~v~~~~~~~~~~~g~~g-----~i~~S~DgG------~tW~~~~~  287 (327)
T 2xbg_A          251 GFLDLAYRTPNEVWLAGGAG-----ALLCSQDGG------QTWQQDVD  287 (327)
T ss_dssp             CEEEEEESSSSCEEEEESTT-----CEEEESSTT------SSCEECGG
T ss_pred             ceEEEEecCCCEEEEEeCCC-----eEEEeCCCC------cccEEcCc
Confidence            2233333 367899988732     243332222      37888764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.53  E-value=0.25  Score=44.17  Aligned_cols=180  Identities=12%  Similarity=0.116  Sum_probs=88.3

Q ss_pred             EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc-ceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEc
Q 040145          151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS-FFASGVI-GGMIYVAGGSSADLFELDSAEVLD  228 (402)
Q Consensus       151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd  228 (402)
                      +.+..++.+++.|+.+       ..+.+||..++.-...  ++.... -.+++.. ++..++.||.      ...+.+||
T Consensus        61 ~~~s~d~~~l~s~s~D-------g~v~iWd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~------d~~v~iw~  125 (340)
T 1got_B           61 MHWGTDSRLLLSASQD-------GKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAPSGNYVACGGL------DNICSIYN  125 (340)
T ss_dssp             EEECTTSSEEEEEETT-------TEEEEEETTTCCEEEE--EECSSSCEEEEEECTTSSEEEEEET------TCEEEEEE
T ss_pred             EEECCCCCEEEEEeCC-------CcEEEEECCCCCcceE--eecCCccEEEEEECCCCCEEEEEeC------CCeEEEEE
Confidence            3343466777777753       2788999887653221  111111 1222222 4566777775      35678888


Q ss_pred             CCCCc--EEEcCCCCCCCcceeEE--EECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC
Q 040145          229 PVKGN--WRTIASMGTNMASYDAA--VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE  302 (402)
Q Consensus       229 ~~t~~--W~~~~~~~~~~~~~~~~--~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~  302 (402)
                      ..+..  ......+.........+  .-++.+ +.|+.+      ..+..||+.+++-...-... .... .++.+  ++
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l-~s~s~d------~~i~~wd~~~~~~~~~~~~h-~~~v-~~~~~~~~~  196 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQI-VTSSGD------TTCALWDIETGQQTTTFTGH-TGDV-MSLSLAPDT  196 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEETTEE-EEEETT------SCEEEEETTTTEEEEEECCC-SSCE-EEEEECTTS
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCCCcE-EEEECC------CcEEEEECCCCcEEEEEcCC-CCce-EEEEECCCC
Confidence            87643  11111111111111111  225564 444432      36889999876532211101 1111 12222  56


Q ss_pred             EEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCcee
Q 040145          303 HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHV  359 (402)
Q Consensus       303 ~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~  359 (402)
                      .+++.|+. ...+.+||..+..-...    +........+++ ..++.+++.|+.+..
T Consensus       197 ~~l~sg~~-d~~v~~wd~~~~~~~~~----~~~h~~~v~~v~~~p~~~~l~s~s~d~~  249 (340)
T 1got_B          197 RLFVSGAC-DASAKLWDVREGMCRQT----FTGHESDINAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             SEEEEEET-TSCEEEEETTTCSEEEE----ECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CEEEEEeC-CCcEEEEECCCCeeEEE----EcCCcCCEEEEEEcCCCCEEEEEcCCCc
Confidence            77777765 45789999877643221    111001112233 346778888876544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.53  E-value=0.13  Score=44.16  Aligned_cols=185  Identities=11%  Similarity=0.010  Sum_probs=94.9

Q ss_pred             eEEEeecCC-CcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc
Q 040145          120 QWQVLDLTH-YCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF  198 (402)
Q Consensus       120 ~~~~~d~~~-~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  198 (402)
                      .++++|..+ .+...+......     .......+..++..+++++...+   ....++.+|..++..+.+.....   .
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~---~  131 (297)
T 2ojh_A           63 LLYRLSLAGDPSPEKVDTGFAT-----ICNNDHGISPDGALYAISDKVEF---GKSAIYLLPSTGGTPRLMTKNLP---S  131 (297)
T ss_dssp             EEEEEESSSCCSCEECCCTTCC-----CBCSCCEECTTSSEEEEEECTTT---SSCEEEEEETTCCCCEECCSSSS---E
T ss_pred             eEEEEeCCCCCCceEecccccc-----ccccceEECCCCCEEEEEEeCCC---CcceEEEEECCCCceEEeecCCC---c
Confidence            588899988 766655432211     11122233335655555553211   35589999988877555543221   2


Q ss_pred             eEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCE-EEEEcccccCCccCCcEE
Q 040145          199 FASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGK-LLVTEGWLWPFFVSPRGQ  273 (402)
Q Consensus       199 ~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~-ly~~gG~~~~~~~~~~~~  273 (402)
                      ..+... ++ .|++.++.++    ...++.+|..+.....+.....   .......  +|+ |++.+...+    ...++
T Consensus       132 ~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~----~~~i~  200 (297)
T 2ojh_A          132 YWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTHGEG---RNDGPDYSPDGRWIYFNSSRTG----QMQIW  200 (297)
T ss_dssp             EEEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCCSSS---CEEEEEECTTSSEEEEEECTTS----SCEEE
T ss_pred             cceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcccCCC---ccccceECCCCCEEEEEecCCC----CccEE
Confidence            222332 33 4554554322    2356777777777666543322   1122222  555 444433221    23677


Q ss_pred             EEeCCCCCeeeccccccCCCceeEEE--ECCEEEEEeccC----------CcEEEEEeCCCCceeecC
Q 040145          274 VYDPSTDNWESMAVGLREGWTGSSVV--VYEHLFVVSELE----------RMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       274 ~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~----------~~~~~~yd~~~~~W~~~~  329 (402)
                      .++........+... .  .....+.  -+++.+++++..          ...+++||..+.+...+.
T Consensus       201 ~~~~~~~~~~~~~~~-~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          201 RVRVDGSSVERITDS-A--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             EEETTSSCEEECCCC-S--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             EECCCCCCcEEEecC-C--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence            788777666655431 1  1111122  256655554432          256999999887765554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.087  Score=53.14  Aligned_cols=183  Identities=12%  Similarity=0.041  Sum_probs=98.8

Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce-EEEEE-C--CEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF-ASGVI-G--GMIYVAGGSSADLFELDSAEVLDPV  230 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~~yd~~  230 (402)
                      .++..++.|+.+       ..+.+||..++++..+..+....... ++... +  +..++.|+.      -..+.+||..
T Consensus        19 ~dg~~latg~~d-------g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~------Dg~I~vwd~~   85 (753)
T 3jro_A           19 YYGKRLATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY------DGKVLIWKEE   85 (753)
T ss_dssp             SSSCCEEEEETT-------TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET------TSCEEEEEEE
T ss_pred             CCCCeEEEEECC-------CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC------CCeEEEEECC
Confidence            356677777652       27889998877776654443332222 33332 2  566777775      3468899999


Q ss_pred             CCcEEEcCCCCCCCcceeEEEE--C--CEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE------
Q 040145          231 KGNWRTIASMGTNMASYDAAVL--D--GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV------  300 (402)
Q Consensus       231 t~~W~~~~~~~~~~~~~~~~~~--~--g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~------  300 (402)
                      ++.|..+..+.........+.+  +  +.+++.|+.+      ..+.+||+.++.-............-.++..      
T Consensus        86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~  159 (753)
T 3jro_A           86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (753)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred             CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence            9888766554443333334433  3  6777777753      3688999877632211110111111111222      


Q ss_pred             ---------CCEEEEEeccCCcEEEEEeCCCC--ceeecCCCCCCccccCCeEEEE-eC---CEEEEEecCcee
Q 040145          301 ---------YEHLFVVSELERMKLKVYDPSTD--SWETIEGPPLPEQICKPFAVNA-CD---CRVYVVGRNLHV  359 (402)
Q Consensus       301 ---------~~~l~~~gg~~~~~~~~yd~~~~--~W~~~~~~~~p~~~~~~~~~~~-~~---~~i~v~GG~~~~  359 (402)
                               ++.+++.|+. ...+.+||..+.  .+..+..  +........++.. .+   +.+++.||.++.
T Consensus       160 ~~~~~~~~~d~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~--~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~  230 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQTYVLEST--LEGHSDWVRDVAWSPTVLLRSYLASVSQDRT  230 (753)
T ss_dssp             -------CGGGCCEEEEET-TSCEEEEEEETTTTEEEEEEE--ECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred             cccccccCCCCCEEEEEEC-CCeEEEEeccCCcccceeeee--ecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence                     3566777665 446788877554  3443331  1111111223332 34   688888886544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.47  E-value=0.44  Score=42.39  Aligned_cols=207  Identities=11%  Similarity=0.063  Sum_probs=106.4

Q ss_pred             eEEEEccCCEEEEEeCccCCC-----------------CCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEE
Q 040145          149 RCVSIPREGTLFVCGGMVSDV-----------------DCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYV  210 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~-----------------~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv  210 (402)
                      ..+++..++.+|+.+..+..-                 ......++++|+.+++.........-.....+++- ++.||+
T Consensus        27 ~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v  106 (329)
T 3fvz_A           27 SGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWV  106 (329)
T ss_dssp             EEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEE
T ss_pred             eEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEE
Confidence            445555678899887653100                 00124699999998875432111111122334433 578998


Q ss_pred             EcCCCCCCCCCCeeEEEcCCCC--cEEEcCCC------CCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCC
Q 040145          211 AGGSSADLFELDSAEVLDPVKG--NWRTIASM------GTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPST  279 (402)
Q Consensus       211 ~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~------~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~  279 (402)
                      ....      ...+.+||+...  .-..+...      .........+.+   ++.||+..+..     ...+.+||+..
T Consensus       107 ~d~~------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g  175 (329)
T 3fvz_A          107 TDVA------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSG  175 (329)
T ss_dssp             EETT------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTS
T ss_pred             EECC------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCC
Confidence            8754      467899998765  22333211      111122333333   68899987521     24789999654


Q ss_pred             CCeeeccccc------cCCCc-eeEEEE--C-CEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCE
Q 040145          280 DNWESMAVGL------REGWT-GSSVVV--Y-EHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCR  349 (402)
Q Consensus       280 ~~W~~~~~~~------~~~~~-~~~~~~--~-~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~  349 (402)
                      ..-..+...-      +.... ...+.+  + +.||+.... ...|.+||+++.+....-  ..+.......+++...+.
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-~~~I~~~~~~~G~~~~~~--~~~~~~~~~~~~~~~pg~  252 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-NGRIQCFKTDTKEFVREI--KHASFGRNVFAISYIPGF  252 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-TTEEEEEETTTCCEEEEE--CCTTTTTCEEEEEEETTE
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-CCEEEEEECCCCcEEEEE--eccccCCCcceeeecCCE
Confidence            4333332100      01111 122333  4 889987654 668999999866554432  122111223344444467


Q ss_pred             EEEEecCce---eeeEEEEeccc
Q 040145          350 VYVVGRNLH---VAVGHITRLST  369 (402)
Q Consensus       350 i~v~GG~~~---~~~~~v~~~~~  369 (402)
                      +|...|...   .....+..++.
T Consensus       253 ~~~~~g~~~v~~~~~~~v~~~~~  275 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQGFVMNF  275 (329)
T ss_dssp             EEEEECCCCTTCSCCCCEEEEET
T ss_pred             EEEeCCCEEeccCCCcEEEEEEc
Confidence            777766432   12234555554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.18  Score=44.94  Aligned_cols=191  Identities=10%  Similarity=0.098  Sum_probs=91.6

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC--CceeecCCCcccccce-EEEEE-CCEEEEEcCCCCCCCCCCee
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK--NRWTVMNKMITARSFF-ASGVI-GGMIYVAGGSSADLFELDSA  224 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t--~~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~  224 (402)
                      .++.+..++..++.|+.+       ..+.+||..+  ..++.+..+....... .+... ++.+++.|+.      -..+
T Consensus       111 ~~v~~sp~g~~las~s~D-------~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~------D~~i  177 (330)
T 2hes_X          111 KGVAWSNDGYYLATCSRD-------KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY------DDTV  177 (330)
T ss_dssp             EEEEECTTSCEEEEEETT-------SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET------TSCE
T ss_pred             EEEEECCCCCEEEEEeCC-------CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC------CCeE
Confidence            344454567777777763       2688899843  2343332222111111 22222 4566777775      3457


Q ss_pred             EEEcCCCCcEEEcCCCCCCCcceeEEEE--C--CEEEEEcccccCCccCCcEEEEeCCCC------Ceeecccccc--CC
Q 040145          225 EVLDPVKGNWRTIASMGTNMASYDAAVL--D--GKLLVTEGWLWPFFVSPRGQVYDPSTD------NWESMAVGLR--EG  292 (402)
Q Consensus       225 ~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~--g~ly~~gG~~~~~~~~~~~~~yd~~~~------~W~~~~~~~~--~~  292 (402)
                      .+||..++.|..+..+.........+.+  +  +..++.|+.+      ..+.+||+.+.      .|........  ..
T Consensus       178 ~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D------~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~  251 (330)
T 2hes_X          178 RIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD------STVRVWKYMGDDEDDQQEWVCEAILPDVHKR  251 (330)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT------SCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred             EEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC------CeEEEEEecCCCccccceeEEeeeccccccc
Confidence            7888877777655444332222222333  2  3455556543      25666766432      3443332111  11


Q ss_pred             CceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-e--CCEEEEEecCcee
Q 040145          293 WTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-C--DCRVYVVGRNLHV  359 (402)
Q Consensus       293 ~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~--~~~i~v~GG~~~~  359 (402)
                      .....+...+.+++.||. ...+.+||..+..|..+...........-.++.. .  ++++++.||.+..
T Consensus       252 ~v~~v~~s~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~  320 (330)
T 2hes_X          252 QVYNVAWGFNGLIASVGA-DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI  320 (330)
T ss_dssp             CEEEEEECTTSCEEEEET-TSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred             ceEEEEEcCCCEEEEEeC-CCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence            111112224445556665 4578889988888865432111111001112222 2  5678888886644

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.45  E-value=0.39  Score=43.24  Aligned_cols=207  Identities=16%  Similarity=0.139  Sum_probs=100.3

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeec----CCCccc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVM----NKMITA  195 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~----~~~~~~  195 (402)
                      .+.++|..+......-..+.      ....++....++..++.||.+       ..+.+|+.....-...    ..+...
T Consensus        87 ~v~vWd~~~~~~~~~~~~~~------~~v~~~~~sp~g~~lasg~~d-------~~i~v~~~~~~~~~~~~~~~~~~~~h  153 (354)
T 2pbi_B           87 KVIVWDSFTTNKEHAVTMPC------TWVMACAYAPSGCAIACGGLD-------NKCSVYPLTFDKNENMAAKKKSVAMH  153 (354)
T ss_dssp             EEEEEETTTCCEEEEEECSS------SCCCEEEECTTSSEEEEESTT-------SEEEEEECCCCTTCCSGGGCEEEEEC
T ss_pred             eEEEEECCCCCcceEEecCC------CCEEEEEECCCCCEEEEeeCC-------CCEEEEEEeccccccccccceeeecc
Confidence            36677876665433222221      122344444577888888873       2677787654321110    001101


Q ss_pred             ccc-eEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE----CCEEEEEcccccCCccC
Q 040145          196 RSF-FASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL----DGKLLVTEGWLWPFFVS  269 (402)
Q Consensus       196 r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~----~g~ly~~gG~~~~~~~~  269 (402)
                      ... ..+... ++..++.|+.      -..+.+||..+++-...  +........+..+    ++.+++.|+.+      
T Consensus       154 ~~~v~~~~~~~~~~~l~t~s~------D~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~D------  219 (354)
T 2pbi_B          154 TNYLSACSFTNSDMQILTASG------DGTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGCD------  219 (354)
T ss_dssp             SSCEEEEEECSSSSEEEEEET------TSEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEETT------
T ss_pred             CCcEEEEEEeCCCCEEEEEeC------CCcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeCC------
Confidence            111 122222 3444445544      45688999988764321  1111111112222    35677777754      


Q ss_pred             CcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCe-EE-EE
Q 040145          270 PRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPF-AV-NA  345 (402)
Q Consensus       270 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~-~~-~~  345 (402)
                      ..+..||+.+++....-. ...... .++.+  ++.+++.|+. ...+.+||..+..-..+-  ..... .... ++ ..
T Consensus       220 g~v~~wd~~~~~~~~~~~-~h~~~v-~~v~~~p~~~~l~s~s~-D~~v~lwd~~~~~~~~~~--~~~~~-~~~~~~~~~s  293 (354)
T 2pbi_B          220 KKAMVWDMRSGQCVQAFE-THESDV-NSVRYYPSGDAFASGSD-DATCRLYDLRADREVAIY--SKESI-IFGASSVDFS  293 (354)
T ss_dssp             SCEEEEETTTCCEEEEEC-CCSSCE-EEEEECTTSSEEEEEET-TSCEEEEETTTTEEEEEE--CCTTC-CSCEEEEEEC
T ss_pred             CeEEEEECCCCcEEEEec-CCCCCe-EEEEEeCCCCEEEEEeC-CCeEEEEECCCCcEEEEE--cCCCc-ccceeEEEEe
Confidence            368899998876432211 111111 12233  5677777775 457899999876432221  11110 1111 22 23


Q ss_pred             eCCEEEEEecCcee
Q 040145          346 CDCRVYVVGRNLHV  359 (402)
Q Consensus       346 ~~~~i~v~GG~~~~  359 (402)
                      .++++++.|+.+..
T Consensus       294 ~~g~~l~~g~~d~~  307 (354)
T 2pbi_B          294 LSGRLLFAGYNDYT  307 (354)
T ss_dssp             TTSSEEEEEETTSC
T ss_pred             CCCCEEEEEECCCc
Confidence            46788888876544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.44  E-value=0.12  Score=47.56  Aligned_cols=134  Identities=7%  Similarity=-0.021  Sum_probs=74.3

Q ss_pred             eEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEEC
Q 040145          175 LVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLD  253 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~  253 (402)
                      .+.+||..+++............-.+++.. ++.++++|+.      ...+.+||..++.-...  +.........+..+
T Consensus       114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~  185 (401)
T 4aez_A          114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLG------NGLVDIYDVESQTKLRT--MAGHQARVGCLSWN  185 (401)
T ss_dssp             EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEET------TSCEEEEETTTCCEEEE--ECCCSSCEEEEEEE
T ss_pred             eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECC------CCeEEEEECcCCeEEEE--ecCCCCceEEEEEC
Confidence            799999999876554333222222233333 5566677665      34688999987764322  22222233344446


Q ss_pred             CEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCc
Q 040145          254 GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       254 g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      +.+++.|+.+      ..+..||+....-..... ......-..+.+  ++.+++.|+. ...+.+||..+..
T Consensus       186 ~~~l~~~~~d------g~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~  250 (401)
T 4aez_A          186 RHVLSSGSRS------GAIHHHDVRIANHQIGTL-QGHSSEVCGLAWRSDGLQLASGGN-DNVVQIWDARSSI  250 (401)
T ss_dssp             TTEEEEEETT------SEEEEEETTSSSCEEEEE-ECCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTCSS
T ss_pred             CCEEEEEcCC------CCEEEEecccCcceeeEE-cCCCCCeeEEEEcCCCCEEEEEeC-CCeEEEccCCCCC
Confidence            7777777653      378899987433111110 111111111222  6777777775 4579999998754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.42  E-value=0.23  Score=43.48  Aligned_cols=189  Identities=8%  Similarity=0.016  Sum_probs=96.8

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNW  234 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  234 (402)
                      ++.||++.-.       ...+++||+.++..+....   +....+++.. ++++|+..        ...+.+||+.++++
T Consensus        24 ~~~l~~~d~~-------~~~i~~~d~~~~~~~~~~~---~~~~~~i~~~~dG~l~v~~--------~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           24 SNSLLFVDIP-------AKKVCRWDSFTKQVQRVTM---DAPVSSVALRQSGGYVATI--------GTKFCALNWKEQSA   85 (297)
T ss_dssp             TTEEEEEETT-------TTEEEEEETTTCCEEEEEC---SSCEEEEEEBTTSSEEEEE--------TTEEEEEETTTTEE
T ss_pred             CCEEEEEECC-------CCEEEEEECCCCcEEEEeC---CCceEEEEECCCCCEEEEE--------CCeEEEEECCCCcE
Confidence            5788887643       3479999999886544321   1111233332 56666653        24689999999988


Q ss_pred             EEcCCCCC--CCcceeEEEE--CCEEEEEcccccC-----CccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC-
Q 040145          235 RTIASMGT--NMASYDAAVL--DGKLLVTEGWLWP-----FFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE-  302 (402)
Q Consensus       235 ~~~~~~~~--~~~~~~~~~~--~g~ly~~gG~~~~-----~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-  302 (402)
                      +.+.....  +........+  +|++|+.......     ......++.+|+. ++...+......  . ....+  ++ 
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~--p-ngi~~spdg~  161 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDI--S-NGLDWSLDHK  161 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESB--E-EEEEECTTSC
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeecccc--c-cceEEcCCCC
Confidence            77654322  1122222333  6888874321110     0112367888875 333333221111  1 12222  44 


Q ss_pred             EEEEEeccCCcEEEEEeC--CCCceeecCC-CCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEeccccc
Q 040145          303 HLFVVSELERMKLKVYDP--STDSWETIEG-PPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSE  371 (402)
Q Consensus       303 ~l~~~gg~~~~~~~~yd~--~~~~W~~~~~-~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~  371 (402)
                      .||+.... ...|++||.  .+........ ..++.......+++. .+|.|||.....+    .|.+||+..
T Consensus       162 ~lyv~~~~-~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~----~v~~~d~~t  229 (297)
T 3g4e_A          162 IFYYIDSL-SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG----RVIRLDPVT  229 (297)
T ss_dssp             EEEEEEGG-GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT----EEEEECTTT
T ss_pred             EEEEecCC-CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC----EEEEEcCCC
Confidence            57776543 567888875  4444321110 011111112234444 4678998764322    388888753

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.41  E-value=0.39  Score=41.17  Aligned_cols=191  Identities=13%  Similarity=0.060  Sum_probs=104.2

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEV  226 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  226 (402)
                      +.+.-..++.||+....       ...++++|+.++.-+.+-... ....+.+++-  ++.||+.-..      ...+.+
T Consensus        40 gi~~d~~~~~ly~~d~~-------~~~I~~~~~~g~~~~~~~~~~-~~~p~~ia~d~~~~~lyv~d~~------~~~I~~  105 (267)
T 1npe_A           40 GLAFDCVDKVVYWTDIS-------EPSIGRASLHGGEPTTIIRQD-LGSPEGIALDHLGRTIFWTDSQ------LDRIEV  105 (267)
T ss_dssp             EEEEETTTTEEEEEETT-------TTEEEEEESSSCCCEEEECTT-CCCEEEEEEETTTTEEEEEETT------TTEEEE
T ss_pred             EEEEecCCCEEEEEECC-------CCEEEEEecCCCCcEEEEECC-CCCccEEEEEecCCeEEEEECC------CCEEEE
Confidence            33333336789987643       347999999876433321111 0122344443  5799998653      467889


Q ss_pred             EcCCCCcEEEcCCCCCCCcce-eEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE---
Q 040145          227 LDPVKGNWRTIASMGTNMASY-DAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV---  300 (402)
Q Consensus       227 yd~~t~~W~~~~~~~~~~~~~-~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~---  300 (402)
                      +|+....-+.+...  ..... ..++-  ++.||+.....    ....++++++....-..+.. .... ......+   
T Consensus       106 ~~~~g~~~~~~~~~--~~~~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~~-~~~~-~P~gia~d~~  177 (267)
T 1npe_A          106 AKMDGTQRRVLFDT--GLVNPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILAQ-DNLG-LPNGLTFDAF  177 (267)
T ss_dssp             EETTSCSCEEEECS--SCSSEEEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEEC-TTCS-CEEEEEEETT
T ss_pred             EEcCCCCEEEEEEC--CCCCccEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEEE-CCCC-CCcEEEEcCC
Confidence            98875443333211  11122 23333  68899975321    12468888876543333221 1111 1112233   


Q ss_pred             CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccccc
Q 040145          301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSE  371 (402)
Q Consensus       301 ~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~  371 (402)
                      +++||+.... .+.|.++|++...-..+.. .    .....+++..++.||+.-...+    .|..+|+..
T Consensus       178 ~~~lyv~d~~-~~~I~~~~~~g~~~~~~~~-~----~~~P~gi~~d~~~lyva~~~~~----~v~~~d~~~  238 (267)
T 1npe_A          178 SSQLCWVDAG-THRAECLNPAQPGRRKVLE-G----LQYPFAVTSYGKNLYYTDWKTN----SVIAMDLAI  238 (267)
T ss_dssp             TTEEEEEETT-TTEEEEEETTEEEEEEEEE-C----CCSEEEEEEETTEEEEEETTTT----EEEEEETTT
T ss_pred             CCEEEEEECC-CCEEEEEecCCCceEEEec-C----CCCceEEEEeCCEEEEEECCCC----eEEEEeCCC
Confidence            5788887543 6789999997643222211 1    1233566777899999765433    378887643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.40  E-value=0.44  Score=41.59  Aligned_cols=112  Identities=12%  Similarity=0.139  Sum_probs=61.4

Q ss_pred             EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc-cceEEEEE---CCEEEEEcCCCCCCCCCCeeE
Q 040145          150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR-SFFASGVI---GGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ++++..++..++.|+.+       ..+.+||..+++.+.+..+.... .-.+++..   ++.+++.|+.      -..+.
T Consensus        14 ~~~~s~~g~~las~s~D-------~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~------D~~v~   80 (297)
T 2pm7_B           14 DAVMDYYGKRMATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY------DGKVM   80 (297)
T ss_dssp             EEEECTTSSEEEEEETT-------SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET------TTEEE
T ss_pred             EEEECCCCCEEEEEeCC-------CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC------CCEEE
Confidence            34444567778888763       26888998765433322222111 11223332   2566777775      35688


Q ss_pred             EEcCCCCcEEEcCCCCCCCcceeEEEE--C--CEEEEEcccccCCccCCcEEEEeCCCC
Q 040145          226 VLDPVKGNWRTIASMGTNMASYDAAVL--D--GKLLVTEGWLWPFFVSPRGQVYDPSTD  280 (402)
Q Consensus       226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~--~--g~ly~~gG~~~~~~~~~~~~~yd~~~~  280 (402)
                      ++|..++.|..+..+.........+.+  +  +.+++.|+.+      ..+..||+.+.
T Consensus        81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~  133 (297)
T 2pm7_B           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKEN  133 (297)
T ss_dssp             EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSS
T ss_pred             EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCC
Confidence            899988776554333222222233333  2  5666666653      36788888765

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.39  E-value=0.0021  Score=55.79  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=39.6

Q ss_pred             CCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhHHHH
Q 040145           53 IPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRR   97 (402)
Q Consensus        53 ~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~~~r   97 (402)
                      +..||+|++..||+.|+.++++++..|||+|+.+...+ .+.+..
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~-~LWr~~   48 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDP-ILWRYF   48 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCH-HHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc-hHHHHH
Confidence            45799999999999999999999999999999999999 665443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.37  E-value=0.21  Score=46.05  Aligned_cols=153  Identities=10%  Similarity=0.049  Sum_probs=81.2

Q ss_pred             EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEc
Q 040145          150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLD  228 (402)
Q Consensus       150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd  228 (402)
                      ++.+..++.+++.|+.+       ..+.+||..++.....-.. ....-.+++.. ++++++.|+.+      ..+.+||
T Consensus       113 ~~~~~p~~~~l~s~s~D-------g~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs~D------~~i~iwd  178 (410)
T 1vyh_C          113 RVIFHPVFSVMVSASED-------ATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCSAD------MTIKLWD  178 (410)
T ss_dssp             EEEECSSSSEEEEEESS-------SCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEETT------SCCCEEE
T ss_pred             EEEEcCCCCEEEEEeCC-------CeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEeCC------CeEEEEe
Confidence            44444466778888763       2689999988754321110 01111222222 46677777763      3466888


Q ss_pred             CCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEE-EECCEEE
Q 040145          229 PVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSV-VVYEHLF  305 (402)
Q Consensus       229 ~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~l~  305 (402)
                      ..+..-  +..+........++.+  ++..++.|+.+      ..+..||+.++.-...-. .......... .-++.++
T Consensus       179 ~~~~~~--~~~~~~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l  249 (410)
T 1vyh_C          179 FQGFEC--IRTMHGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGTLI  249 (410)
T ss_dssp             TTSSCE--EECCCCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEE
T ss_pred             CCCCce--eEEEcCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEe-CCCccEEEEEECCCCCEE
Confidence            876542  2222222222233333  56666777653      368899998765322111 0111111111 2256777


Q ss_pred             EEeccCCcEEEEEeCCCCcee
Q 040145          306 VVSELERMKLKVYDPSTDSWE  326 (402)
Q Consensus       306 ~~gg~~~~~~~~yd~~~~~W~  326 (402)
                      +.|+. ...+.+||..+....
T Consensus       250 ~s~s~-D~~v~vwd~~~~~~~  269 (410)
T 1vyh_C          250 ASCSN-DQTVRVWVVATKECK  269 (410)
T ss_dssp             EEEET-TSCEEEEETTTCCEE
T ss_pred             EEEcC-CCeEEEEECCCCcee
Confidence            77665 457888998776543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=96.37  E-value=0.3  Score=48.55  Aligned_cols=185  Identities=8%  Similarity=-0.097  Sum_probs=91.0

Q ss_pred             CceEEEEECCCCceeecCCCccc-ccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCC-cEEEcCCCCCCC----c
Q 040145          173 LDLVLKYEMQKNRWTVMNKMITA-RSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKG-NWRTIASMGTNM----A  245 (402)
Q Consensus       173 ~~~~~~~d~~t~~W~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~~----~  245 (402)
                      ...++++|..+++-+.+...... .....++.. +++.++++..+.... ...+.++|..++ ..+.+.......    .
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~-~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQN-ECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSC-EEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCC-eeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            46799999998876554422111 111222322 454333333222222 457899999988 666553111110    0


Q ss_pred             ceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC-EEEEEeccCC---cEEEE
Q 040145          246 SYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE-HLFVVSELER---MKLKV  317 (402)
Q Consensus       246 ~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~l~~~gg~~~---~~~~~  317 (402)
                      ......-  +|++++.+..++    ...++.+|...+....+... .. .....+.+  ++ .||+.+..+.   ..++.
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~-~~-~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~  386 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKG-EW-EVTNFAGFDPKGTRLYFESTEASPLERHFYC  386 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCS-SS-CEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred             CCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCC-Ce-EEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence            1112233  778666554332    24678888766666666431 11 11111223  44 4555544332   48999


Q ss_pred             EeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145          318 YDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       318 yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      +|..+...+.+..  ..   .........+++.+++.........+++.+|.
T Consensus       387 ~d~~~~~~~~l~~--~~---~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          387 IDIKGGKTKDLTP--ES---GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             EETTCCCCEESCC--SS---SEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             EEcCCCCceeccC--CC---ceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            9998877665541  11   11112223456655555433232344555554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.34  E-value=0.34  Score=42.37  Aligned_cols=201  Identities=15%  Similarity=0.104  Sum_probs=98.8

Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC---cccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcC
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM---ITARSFFASGVI-G-GMIYVAGGSSADLFELDSAEVLDP  229 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~---~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~  229 (402)
                      .++.+|+..............+++||+.+++++.+...   .......+++.. + +++|+...       ...+.+||+
T Consensus        27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-------~~~l~~~d~   99 (314)
T 1pjx_A           27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------RLGLLVVQT   99 (314)
T ss_dssp             TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------TTEEEEEET
T ss_pred             CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-------CCCEEEEeC
Confidence            46788887110000001134799999999887664320   011122333332 4 78888764       236899999


Q ss_pred             CCCcEEEc-CCCCCC--CcceeEEEE--CCEEEEEccccc---------CCccCCcEEEEeCCCCCeeeccccccCCCce
Q 040145          230 VKGNWRTI-ASMGTN--MASYDAAVL--DGKLLVTEGWLW---------PFFVSPRGQVYDPSTDNWESMAVGLREGWTG  295 (402)
Q Consensus       230 ~t~~W~~~-~~~~~~--~~~~~~~~~--~g~ly~~gG~~~---------~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~  295 (402)
                      . ++...+ ......  .........  +|.+|+......         .......++.||+. ++...+....... .+
T Consensus       100 ~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~-~~  176 (314)
T 1pjx_A          100 D-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP-NG  176 (314)
T ss_dssp             T-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE-EE
T ss_pred             C-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc-ce
Confidence            8 777665 332211  111223333  678888654320         00112368899987 6555443211111 12


Q ss_pred             eEEE----ECC-EEEEEeccCCcEEEEEeCC-CCceeecCCC-CCCccc-cCCeEEEE-eCCEEEEEecCceeeeEEEEe
Q 040145          296 SSVV----VYE-HLFVVSELERMKLKVYDPS-TDSWETIEGP-PLPEQI-CKPFAVNA-CDCRVYVVGRNLHVAVGHITR  366 (402)
Q Consensus       296 ~~~~----~~~-~l~~~gg~~~~~~~~yd~~-~~~W~~~~~~-~~p~~~-~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~  366 (402)
                      .+..    -++ .+|+... ....+++||++ +.+....... .++... ....+++. .+|.||+.....+    .|..
T Consensus       177 i~~~~~~d~dg~~l~v~~~-~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~----~i~~  251 (314)
T 1pjx_A          177 IAVRHMNDGRPYQLIVAET-PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS----HIEV  251 (314)
T ss_dssp             EEEEECTTSCEEEEEEEET-TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT----EEEE
T ss_pred             EEEecccCCCCCEEEEEEC-CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC----EEEE
Confidence            2223    234 4666543 35689999876 3433211100 111110 11223333 4678888753322    3777


Q ss_pred             cccc
Q 040145          367 LSTS  370 (402)
Q Consensus       367 ~~~~  370 (402)
                      ||+.
T Consensus       252 ~d~~  255 (314)
T 1pjx_A          252 FGPD  255 (314)
T ss_dssp             ECTT
T ss_pred             EcCC
Confidence            7765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.33  E-value=0.04  Score=51.44  Aligned_cols=146  Identities=10%  Similarity=0.057  Sum_probs=77.6

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC-cccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM-ITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKG  232 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~-~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~  232 (402)
                      ++.+++.|+.+       ..+.+||..++.-..+-.+ .....-.++...  ++.+++.|+.+      ..+.+||..++
T Consensus       131 ~~~~lasGs~d-------g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D------~~v~iwd~~~~  197 (435)
T 4e54_B          131 HPSTVAVGSKG-------GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME------GTTRLQDFKGN  197 (435)
T ss_dssp             CTTCEEEEETT-------SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS------SCEEEEETTSC
T ss_pred             CCCEEEEEeCC-------CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC------CEEEEeeccCC
Confidence            44577777753       2688999887754332222 122222344443  45666677653      45788999887


Q ss_pred             cEEEcCCCCCCCc-ceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--C-CEEEEE
Q 040145          233 NWRTIASMGTNMA-SYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--Y-EHLFVV  307 (402)
Q Consensus       233 ~W~~~~~~~~~~~-~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~-~~l~~~  307 (402)
                      .-..+........ ..+... -++.+++.|+.+      ..+..||+....-..+..  ..... .++.+  + ..+++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~~~~~~~~--h~~~v-~~v~~~p~~~~~~~s  268 (435)
T 4e54_B          198 ILRVFASSDTINIWFCSLDVSASSRMVVTGDNV------GNVILLNMDGKELWNLRM--HKKKV-THVALNPCCDWFLAT  268 (435)
T ss_dssp             EEEEEECCSSCSCCCCCEEEETTTTEEEEECSS------SBEEEEESSSCBCCCSBC--CSSCE-EEEEECTTCSSEEEE
T ss_pred             ceeEEeccCCCCccEEEEEECCCCCEEEEEeCC------CcEeeeccCcceeEEEec--ccceE-EeeeecCCCceEEEE
Confidence            6655433222211 122222 367787887753      368889986543222211  01111 12333  3 346666


Q ss_pred             eccCCcEEEEEeCCCCc
Q 040145          308 SELERMKLKVYDPSTDS  324 (402)
Q Consensus       308 gg~~~~~~~~yd~~~~~  324 (402)
                      |+. ...+.+||..+..
T Consensus       269 ~s~-d~~v~iwd~~~~~  284 (435)
T 4e54_B          269 ASV-DQTVKIWDLRQVR  284 (435)
T ss_dssp             EET-TSBCCEEETTTCC
T ss_pred             ecC-cceeeEEeccccc
Confidence            665 4568888887643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.32  E-value=0.15  Score=44.99  Aligned_cols=141  Identities=13%  Similarity=0.102  Sum_probs=69.7

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc----
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT----  194 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~----  194 (402)
                      .+.++|+.+.+....-..+...    .....+++..++ .+|+.+..       ...+.+||+.+++-...-..+.    
T Consensus        12 ~v~~~d~~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~v~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~~   80 (337)
T 1pby_B           12 KLVVIDTEKMAVDKVITIADAG----PTPMVPMVAPGGRIAYATVNK-------SESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTTCT----TCCCCEEECTTSSEEEEEETT-------TTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             eEEEEECCCCcEEEEEEcCCCC----CCccceEEcCCCCEEEEEeCC-------CCeEEEEECCCCCeEeeEEcCCcccc
Confidence            4788998887654322222100    001122332344 77877653       2479999999886433111111    


Q ss_pred             cccceEEEEE-CC-EEEEEcCC---CCCCC--CCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCE-EEEEcccccC
Q 040145          195 ARSFFASGVI-GG-MIYVAGGS---SADLF--ELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGK-LLVTEGWLWP  265 (402)
Q Consensus       195 ~r~~~~~~~~-~~-~iyv~GG~---~~~~~--~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~-ly~~gG~~~~  265 (402)
                      ......++.. ++ .+|+....   .....  ....+.+||..+.+....-...  ......+.. +|+ ||+..     
T Consensus        81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~-----  153 (337)
T 1pby_B           81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGLG-----  153 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEES-----
T ss_pred             cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEeC-----
Confidence            0012223332 33 67776411   00000  1367999999887654321111  111222222 555 66652     


Q ss_pred             CccCCcEEEEeCCCCCe
Q 040145          266 FFVSPRGQVYDPSTDNW  282 (402)
Q Consensus       266 ~~~~~~~~~yd~~~~~W  282 (402)
                          ..+.+||+.+++-
T Consensus       154 ----~~i~~~d~~~~~~  166 (337)
T 1pby_B          154 ----RDLHVMDPEAGTL  166 (337)
T ss_dssp             ----SSEEEEETTTTEE
T ss_pred             ----CeEEEEECCCCcE
Confidence                2688999987654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=96.30  E-value=0.94  Score=44.48  Aligned_cols=239  Identities=13%  Similarity=0.037  Sum_probs=119.3

Q ss_pred             ceeEEEeecC--C-CcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCC---CCCCCceEEEEECCC------Cc
Q 040145          118 KIQWQVLDLT--H-YCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD---VDCPLDLVLKYEMQK------NR  185 (402)
Q Consensus       118 ~~~~~~~d~~--~-~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~---~~~~~~~~~~~d~~t------~~  185 (402)
                      ..+++.++..  . .....+...+...  ........+...+|+.+++...+..   ......+++++|..+      +.
T Consensus       101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  178 (662)
T 3azo_A          101 DQRLYAFEPDAPGGAVPRPLTPVSAVG--GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA  178 (662)
T ss_dssp             TCCEEEECTTSTTCCCCEECSCCCCST--TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred             CCeEEEEcCCCCCCCCCEeccCCccCC--CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence            3457888876  3 5555555432100  0012333444445544444433210   012346899999988      66


Q ss_pred             eeecC-CCcccccceEEEE-ECCE-EEEEcCCCCCC-CCCCeeEEEcCC-CC---cEEEcCCCCCCCcceeEEEE--CCE
Q 040145          186 WTVMN-KMITARSFFASGV-IGGM-IYVAGGSSADL-FELDSAEVLDPV-KG---NWRTIASMGTNMASYDAAVL--DGK  255 (402)
Q Consensus       186 W~~~~-~~~~~r~~~~~~~-~~~~-iyv~GG~~~~~-~~~~~~~~yd~~-t~---~W~~~~~~~~~~~~~~~~~~--~g~  255 (402)
                      -+.+. .-.  ......+. -+++ |++........ .....++++|.. ++   ..+.+..-.  .........  +|+
T Consensus       179 ~~~l~~~~~--~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~--~~~~~~~~~spdg~  254 (662)
T 3azo_A          179 VRELSDDAH--RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP--EEAIAQAEWAPDGS  254 (662)
T ss_dssp             SEESSCSCS--SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET--TBCEEEEEECTTSC
T ss_pred             eeEEEecCC--CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC--CceEcceEECCCCe
Confidence            55554 211  11111222 2444 44443221111 113579999998 56   333332111  111222222  788


Q ss_pred             EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCC----C---ceeEEEE-CCEEEEEeccCCcEEEEEeCCCCceee
Q 040145          256 LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREG----W---TGSSVVV-YEHLFVVSELERMKLKVYDPSTDSWET  327 (402)
Q Consensus       256 ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~----~---~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~~  327 (402)
                      +|+.+...+    ...++.+|+.++++..+.......    +   ....+.. ++++++.+......++.+|..+.....
T Consensus       255 l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  330 (662)
T 3azo_A          255 LIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVD  330 (662)
T ss_dssp             EEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEE
T ss_pred             EEEEECCCC----CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEE
Confidence            887765432    237899999888888775411111    1   1112232 677777665444578888998887766


Q ss_pred             cCCCCCCccccCCeEE-EEeCCEEEEEecCceeeeEEEEecccccc
Q 040145          328 IEGPPLPEQICKPFAV-NACDCRVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       328 ~~~~~~p~~~~~~~~~-~~~~~~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                      +..   +.  .....+ ...++.+++..+... ...+++.+|....
T Consensus       331 l~~---~~--~~~~~~~s~~~~~~~~~~~~~~-~~~~i~~~d~~~g  370 (662)
T 3azo_A          331 AAG---PW--TEWAATLTVSGTRAVGVAASPR-TAYEVVELDTVTG  370 (662)
T ss_dssp             CCS---SC--CEEEEEEEEETTEEEEEEEETT-EEEEEEEEETTTC
T ss_pred             ecC---CC--CeEEEEEecCCCEEEEEEcCCC-CCCEEEEEECCCC
Confidence            642   21  111233 345667766655332 2356777765433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.29  E-value=0.24  Score=44.13  Aligned_cols=185  Identities=8%  Similarity=0.009  Sum_probs=89.7

Q ss_pred             eEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc
Q 040145          106 WLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR  185 (402)
Q Consensus       106 ~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~  185 (402)
                      .+++.++.+.    .+.+||..+........+....    ....++.+..++..++.|+.+       ..+.+||..+++
T Consensus        55 ~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~~d-------g~v~iwd~~~~~  119 (368)
T 3mmy_A           55 NFLIAGSWAN----DVRCWEVQDSGQTIPKAQQMHT----GPVLDVCWSDDGSKVFTASCD-------KTAKMWDLSSNQ  119 (368)
T ss_dssp             EEEEEEETTS----EEEEEEECTTSCEEEEEEEECS----SCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTE
T ss_pred             eEEEEECCCC----cEEEEEcCCCCceeEEEecccc----CCEEEEEECcCCCEEEEEcCC-------CcEEEEEcCCCC
Confidence            5555554332    3677777652221111111000    223344444466667777652       279999999887


Q ss_pred             eeecCCCcccccceEEEE---ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccc
Q 040145          186 WTVMNKMITARSFFASGV---IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGW  262 (402)
Q Consensus       186 W~~~~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~  262 (402)
                      ...+..  ....-.++..   -++.+++.|+.      ...+.+||..++.-...  +...............+++.++.
T Consensus       120 ~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  189 (368)
T 3mmy_A          120 AIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSW------DKTLKFWDTRSSNPMMV--LQLPERCYCADVIYPMAVVATAE  189 (368)
T ss_dssp             EEEEEE--CSSCEEEEEEEECSSCEEEEEEET------TSEEEEECSSCSSCSEE--EECSSCEEEEEEETTEEEEEEGG
T ss_pred             ceeecc--ccCceEEEEEEeCCCCCEEEEccC------CCcEEEEECCCCcEEEE--EecCCCceEEEecCCeeEEEeCC
Confidence            554322  1111222332   25677777775      45688999887642111  11111222233334544443332


Q ss_pred             ccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEECC----EEEEEeccCCcEEEEEeCCCC
Q 040145          263 LWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVYE----HLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       263 ~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~----~l~~~gg~~~~~~~~yd~~~~  323 (402)
                             ..+..||.....  +..+............+..+.    ..++.|+. ...+.+||....
T Consensus       190 -------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~i~i~~~~~~  248 (368)
T 3mmy_A          190 -------RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI-EGRVAIHYINPP  248 (368)
T ss_dssp             -------GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET-TSEEEEEESSCS
T ss_pred             -------CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC-CCcEEEEecCCC
Confidence                   367888887653  333332222211111122222    22555554 567888888765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.25  E-value=0.0026  Score=57.35  Aligned_cols=42  Identities=26%  Similarity=0.412  Sum_probs=37.9

Q ss_pred             CCCCCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCc
Q 040145           49 AEPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNK   90 (402)
Q Consensus        49 ~~~~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~   90 (402)
                      ....|..||+|++.+|+.+|+..++.++..|||+|+.+...|
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~   46 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE   46 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCS
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCc
Confidence            355789999999999999999999999999999999999777

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.24  Score=45.21  Aligned_cols=220  Identities=8%  Similarity=0.003  Sum_probs=105.1

Q ss_pred             eeEEEeecCCCcEE-eCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC--ceeecCCCcc-
Q 040145          119 IQWQVLDLTHYCWH-TIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN--RWTVMNKMIT-  194 (402)
Q Consensus       119 ~~~~~~d~~~~~W~-~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~--~W~~~~~~~~-  194 (402)
                      ..+.+||..+..-. .+.....     .....++....++.+++.|+.+       ..+.+||..+.  ..+.+..+.. 
T Consensus        45 ~~v~iw~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d-------g~v~vw~~~~~~~~~~~~~~~~~h  112 (416)
T 2pm9_A           45 SSLELWSLLAADSEKPIASLQV-----DSKFNDLDWSHNNKIIAGALDN-------GSLELYSTNEANNAINSMARFSNH  112 (416)
T ss_dssp             CCCEEEESSSGGGCSCSCCCCC-----SSCEEEEEECSSSSCEEEEESS-------SCEEEECCSSTTSCCCEEEECCCS
T ss_pred             CeEEEEEccCCCCCcEEEEEec-----CCceEEEEECCCCCeEEEEccC-------CeEEEeecccccccccchhhccCC
Confidence            35778887765432 1211221     1234445554567777777652       26888998772  1112111111 


Q ss_pred             cccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc------EE-EcCCCCCCCcceeEEEE--C-CEEEEEccc
Q 040145          195 ARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN------WR-TIASMGTNMASYDAAVL--D-GKLLVTEGW  262 (402)
Q Consensus       195 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~------W~-~~~~~~~~~~~~~~~~~--~-g~ly~~gG~  262 (402)
                      ...-.++...  ++.+++.|+.      ...+.+||..+..      -. .+............+.+  + +.+++.|+.
T Consensus       113 ~~~v~~~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  186 (416)
T 2pm9_A          113 SSSVKTVKFNAKQDNVLASGGN------NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS  186 (416)
T ss_dssp             SSCCCEEEECSSSTTBEEEECS------SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS
T ss_pred             ccceEEEEEcCCCCCEEEEEcC------CCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC
Confidence            1112233333  2567777765      3458888988764      11 11111111112222333  3 567777765


Q ss_pred             ccCCccCCcEEEEeCCCCCeeecccccc-C---CCceeEEEE--CC-EEEEEeccCC--cEEEEEeCCCCceeecCCCCC
Q 040145          263 LWPFFVSPRGQVYDPSTDNWESMAVGLR-E---GWTGSSVVV--YE-HLFVVSELER--MKLKVYDPSTDSWETIEGPPL  333 (402)
Q Consensus       263 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~---~~~~~~~~~--~~-~l~~~gg~~~--~~~~~yd~~~~~W~~~~~~~~  333 (402)
                      +      ..+.+||+.+.+-...-.... .   ...-..+.+  ++ .+++.|+.+.  ..+.+||..+..- .+.  .+
T Consensus       187 d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~--~~  257 (416)
T 2pm9_A          187 S------NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQ--TL  257 (416)
T ss_dssp             S------SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSB--CC
T ss_pred             C------CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcE--Ee
Confidence            3      368999998765432211111 0   111112233  33 5666666532  2788999986431 111  11


Q ss_pred             C-ccccCCeEEEE-e-CCEEEEEecCceeeeEEEEeccc
Q 040145          334 P-EQICKPFAVNA-C-DCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       334 p-~~~~~~~~~~~-~-~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      . .......++.. . ++.+++.|+.+..    +..+|.
T Consensus       258 ~~~~~~~v~~~~~s~~~~~~l~s~~~dg~----v~~wd~  292 (416)
T 2pm9_A          258 NQGHQKGILSLDWCHQDEHLLLSSGRDNT----VLLWNP  292 (416)
T ss_dssp             CSCCSSCEEEEEECSSCSSCEEEEESSSE----EEEECS
T ss_pred             ecCccCceeEEEeCCCCCCeEEEEeCCCC----EEEeeC
Confidence            1 11111223333 2 6778888876543    444543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.24  E-value=0.47  Score=41.89  Aligned_cols=207  Identities=8%  Similarity=0.012  Sum_probs=99.7

Q ss_pred             eEEEeec-CCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc-------eeecCC
Q 040145          120 QWQVLDL-THYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR-------WTVMNK  191 (402)
Q Consensus       120 ~~~~~d~-~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~-------W~~~~~  191 (402)
                      .+.+||. .+.....+......     ....++.+.. +.+++.|+.+       ..+.+||..+..       .+.+..
T Consensus        80 ~i~~wd~~~~~~~~~~~~~~~~-----~~v~~l~~~~-~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~  146 (342)
T 1yfq_A           80 EILKVDLIGSPSFQALTNNEAN-----LGICRICKYG-DDKLIAASWD-------GLIEVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCC-----SCEEEEEEET-TTEEEEEETT-------SEEEEECHHHHTTBCEEEEESCSSS
T ss_pred             eEEEEEeccCCceEeccccCCC-----CceEEEEeCC-CCEEEEEcCC-------CeEEEEcccccccccccccCCeeeE
Confidence            3788898 77766555431100     2223333323 5566666652       268889876510       122222


Q ss_pred             CcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCC-Cc--EEEcCCCCCCCcceeEEEE--CCEEEEEcccccCC
Q 040145          192 MITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVK-GN--WRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPF  266 (402)
Q Consensus       192 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~--W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~  266 (402)
                      +.....-.++....+. +++|+.      ...+.+||..+ ..  ...... +...........  ++.+++.|+.+   
T Consensus       147 ~~~~~~v~~~~~~~~~-l~~~~~------d~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d---  215 (342)
T 1yfq_A          147 TKVKNKIFTMDTNSSR-LIVGMN------NSQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSID---  215 (342)
T ss_dssp             SSSCCCEEEEEECSSE-EEEEES------TTEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETT---
T ss_pred             EeeCCceEEEEecCCc-EEEEeC------CCeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEecC---
Confidence            2222233344445556 555543      45788999887 33  222111 111111222222  46777777653   


Q ss_pred             ccCCcEEEEeCCCC------C-eeecccccc--C----CCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCC
Q 040145          267 FVSPRGQVYDPSTD------N-WESMAVGLR--E----GWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGP  331 (402)
Q Consensus       267 ~~~~~~~~yd~~~~------~-W~~~~~~~~--~----~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~  331 (402)
                         ..+.+||....      + -..+.....  .    ...-..+.+  ++++++.|+. ...+.+||..+.+-...   
T Consensus       216 ---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~---  288 (342)
T 1yfq_A          216 ---GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-DGIISCWNLQTRKKIKN---  288 (342)
T ss_dssp             ---SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEE---
T ss_pred             ---CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC-CceEEEEcCccHhHhhh---
Confidence               24666665443      1 111111000  0    001112233  5666666665 45799999987653322   


Q ss_pred             CCCcc-ccCCeEEEEeCCEEEEEecCcee
Q 040145          332 PLPEQ-ICKPFAVNACDCRVYVVGRNLHV  359 (402)
Q Consensus       332 ~~p~~-~~~~~~~~~~~~~i~v~GG~~~~  359 (402)
                       +... ...-.+++ .++++++.|+.+..
T Consensus       289 -~~~~h~~~v~~~~-~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          289 -FAKFNEDSVVKIA-CSDNILCLATSDDT  315 (342)
T ss_dssp             -CCCCSSSEEEEEE-ECSSEEEEEEECTH
T ss_pred             -hhcccCCCceEec-CCCCeEEEEecCCc
Confidence             2211 12223444 78888888876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.22  E-value=0.13  Score=51.96  Aligned_cols=182  Identities=8%  Similarity=-0.058  Sum_probs=89.1

Q ss_pred             EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEc
Q 040145          150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLD  228 (402)
Q Consensus       150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd  228 (402)
                      ++++..++..+++|+.       ...+.+||..+++....-.. ....-.+++.. +++.+++|+.      ...+.+||
T Consensus        18 ~i~~sp~~~~la~~~~-------~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~------dg~i~vw~   83 (814)
T 3mkq_A           18 GIDFHPTEPWVLTTLY-------SGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSD------DFRIRVFN   83 (814)
T ss_dssp             EEEECSSSSEEEEEET-------TSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEET------TSEEEEEE
T ss_pred             EEEECCCCCEEEEEeC-------CCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCCEEEEEeC------CCeEEEEE
Confidence            3344345666666664       23799999988754331111 11111222222 4556666665      45789999


Q ss_pred             CCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEE-E--CCE
Q 040145          229 PVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV-V--YEH  303 (402)
Q Consensus       229 ~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~-~--~~~  303 (402)
                      ..++.....-  .........+.+  ++..++.|+.+      ..+.+||..++ |............-..+. .  ++.
T Consensus        84 ~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~  154 (814)
T 3mkq_A           84 YNTGEKVVDF--EAHPDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPS  154 (814)
T ss_dssp             TTTCCEEEEE--ECCSSCEEEEEECSSSSEEEEEETT------SEEEEEEGGGT-SEEEEEEECCSSCEEEEEEETTEEE
T ss_pred             CCCCcEEEEE--ecCCCCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCC-ceEEEEEcCCCCcEEEEEEEcCCCC
Confidence            9887653321  111111222222  56666666542      36889998765 222211111111111222 2  456


Q ss_pred             EEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-e--CCEEEEEecCce
Q 040145          304 LFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-C--DCRVYVVGRNLH  358 (402)
Q Consensus       304 l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~--~~~i~v~GG~~~  358 (402)
                      ++++|+. ...+.+||..+..-....  ..... .....+.. .  ++.+++.|+.+.
T Consensus       155 ~l~~~~~-dg~v~vwd~~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg  208 (814)
T 3mkq_A          155 TFASGCL-DRTVKVWSLGQSTPNFTL--TTGQE-RGVNYVDYYPLPDKPYMITASDDL  208 (814)
T ss_dssp             EEEEEET-TSEEEEEETTCSSCSEEE--ECCCT-TCCCEEEECCSTTCCEEEEECTTS
T ss_pred             EEEEEeC-CCeEEEEECCCCcceeEE--ecCCC-CCEEEEEEEECCCCCEEEEEeCCC
Confidence            6766665 457999998654322211  01110 11122222 2  677777777554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.20  E-value=1.1  Score=44.42  Aligned_cols=255  Identities=8%  Similarity=0.005  Sum_probs=127.1

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      .+.++|.+..+.......+++.+.....|..+..................+..+|+.+++......  .....++++|..
T Consensus        78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G--~~~~~i~v~dl~  155 (695)
T 2bkl_A           78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNA--ADEAVLHVIDVD  155 (695)
T ss_dssp             ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETT--CSCCEEEEEETT
T ss_pred             ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCC--CceEEEEEEECC
Confidence            366777766544433455677777777777664432110000012344455556665555432111  123489999999


Q ss_pred             CCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCC-------CCCCeeEEEcCCCCcE--EEcCCCCCCC-cceeEE-
Q 040145          183 KNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADL-------FELDSAEVLDPVKGNW--RTIASMGTNM-ASYDAA-  250 (402)
Q Consensus       183 t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~-------~~~~~~~~yd~~t~~W--~~~~~~~~~~-~~~~~~-  250 (402)
                      +++......++.... ...+.. +++.++++..+...       .....+++++..++.-  ..+-..+... ...... 
T Consensus       156 tg~~~~~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~  234 (695)
T 2bkl_A          156 SGEWSKVDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL  234 (695)
T ss_dssp             TCCBCSSCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred             CCCCcCCcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence            998651111221111 223333 44444444432210       1134588888887652  2232222221 122222 


Q ss_pred             EECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCCCc---e
Q 040145          251 VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPSTDS---W  325 (402)
Q Consensus       251 ~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~~~---W  325 (402)
                      .-+|+..++....+.  ....++.+|..++.|..+..... ... ..+..+|.+|+....+  ...++.+|.++..   |
T Consensus       235 SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~-~~~-~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~  310 (695)
T 2bkl_A          235 SRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKGVG-AKY-EVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASW  310 (695)
T ss_dssp             CTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEECSS-CCE-EEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred             CCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecCCC-ceE-EEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence            226665454443221  12367788877778887764222 111 2233566666554322  4689999997654   8


Q ss_pred             eecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145          326 ETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       326 ~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      ..+-. .-+.  .....+...+++|++....+.  ...++.++.
T Consensus       311 ~~l~~-~~~~--~~l~~~~~~~~~lv~~~~~dg--~~~l~~~~~  349 (695)
T 2bkl_A          311 KEIVP-EDSS--ASLLSVSIVGGHLSLEYLKDA--TSEVRVATL  349 (695)
T ss_dssp             EEEEC-CCSS--CEEEEEEEETTEEEEEEEETT--EEEEEEEET
T ss_pred             eEEec-CCCC--CeEEEEEEECCEEEEEEEECC--EEEEEEEeC
Confidence            87652 1111  111234445888887765433  244666654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.20  E-value=1.1  Score=44.37  Aligned_cols=119  Identities=15%  Similarity=0.170  Sum_probs=67.9

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCC---CC-CCCceEEEEccCCEEEEEeCccCCCCCCCceE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDK---VC-PHGFRCVSIPREGTLFVCGGMVSDVDCPLDLV  176 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~---~~-~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~  176 (402)
                      .++.+|+...     ...++++|..+.+  |+.-...+....   .+ ....+.+.  .++.||+...        ...+
T Consensus        76 ~~g~vyv~~~-----~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~--------dg~l  140 (677)
T 1kb0_A           76 VDGIMYVSAS-----WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW--------DGRL  140 (677)
T ss_dssp             ETTEEEEECG-----GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT--------TSEE
T ss_pred             ECCEEEEECC-----CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC--------CCEE
Confidence            4777887653     2358999998876  876433221000   00 01112233  3788888642        2379


Q ss_pred             EEEECCCCc--eeecCC-C-cc-cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEc
Q 040145          177 LKYEMQKNR--WTVMNK-M-IT-ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTI  237 (402)
Q Consensus       177 ~~~d~~t~~--W~~~~~-~-~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~  237 (402)
                      +.+|..|++  |+.-.. - .. .......++.++.+|+..+..+... ...+..||..|++  |+.-
T Consensus       141 ~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~-~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          141 IALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGV-RGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             EEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCC-BCEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCC-CCEEEEEECCCCcEEEEec
Confidence            999999985  876322 1 11 1122234556888887654322222 5679999999876  8753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.20  E-value=0.43  Score=43.60  Aligned_cols=157  Identities=10%  Similarity=0.043  Sum_probs=82.3

Q ss_pred             eEEEEcc-CCEEEEEeCccCCCCCCCceEEEEECCCCceee-----cCCCccc-ccceEEEEE-CC-EEEEEcCCCCCCC
Q 040145          149 RCVSIPR-EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-----MNKMITA-RSFFASGVI-GG-MIYVAGGSSADLF  219 (402)
Q Consensus       149 ~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-----~~~~~~~-r~~~~~~~~-~~-~iyv~GG~~~~~~  219 (402)
                      .++.+.. ++.+++.|+.+       ..+.+||..++....     +..+... ..-..+... ++ .+++.|+.     
T Consensus        85 ~~~~~~p~~~~~l~s~s~d-------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~-----  152 (402)
T 2aq5_A           85 LDIAWCPHNDNVIASGSED-------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC-----  152 (402)
T ss_dssp             EEEEECTTCTTEEEEEETT-------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET-----
T ss_pred             EEEEeCCCCCCEEEEEeCC-------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC-----
Confidence            3344433 66777777752       279999998875422     1111111 111223333 22 46777765     


Q ss_pred             CCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeecc-ccccCCCcee
Q 040145          220 ELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMA-VGLREGWTGS  296 (402)
Q Consensus       220 ~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~  296 (402)
                       ...+.+||..++.....-...........+.+  ++.+++.|+.+      ..+.+||+.+++-...- ..........
T Consensus       153 -dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~  225 (402)
T 2aq5_A          153 -DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTVVAEKDRPHEGTRPVH  225 (402)
T ss_dssp             -TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEECSSCSSSCCE
T ss_pred             -CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCceeeeeccCCCCCcceE
Confidence             34688999988765432110111122223333  67777777643      37899999876532221 1111111112


Q ss_pred             E-EEECCEEEEEec--cCCcEEEEEeCCCCc
Q 040145          297 S-VVVYEHLFVVSE--LERMKLKVYDPSTDS  324 (402)
Q Consensus       297 ~-~~~~~~l~~~gg--~~~~~~~~yd~~~~~  324 (402)
                      . ..-+++++++|.  .....+.+||..+..
T Consensus       226 ~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          226 AVFVSEGKILTTGFSRMSERQVALWDTKHLE  256 (402)
T ss_dssp             EEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred             EEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence            2 233677777762  235689999997643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=96.18  E-value=0.5  Score=46.51  Aligned_cols=194  Identities=13%  Similarity=0.035  Sum_probs=105.0

Q ss_pred             ceeEEEeecCC------CcEEeCC-CCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCC-CCCceEEEEECC-CCceee
Q 040145          118 KIQWQVLDLTH------YCWHTIP-AMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVD-CPLDLVLKYEMQ-KNRWTV  188 (402)
Q Consensus       118 ~~~~~~~d~~~------~~W~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~-~~~~~~~~~d~~-t~~W~~  188 (402)
                      ..+++.+|..+      .....+. .-.       .......+..+|+.+++...+.... -...+++++|.. ++++..
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~  232 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAVRELSDDAH-------RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD  232 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGSEESSCSCS-------SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred             eeEEEEEECCCCccccCCceeEEEecCC-------CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence            35788899887      6655554 211       1112223334665444443322110 023589999998 573322


Q ss_pred             cCCCccc--ccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCc-------ceeEEEE-CCEEE
Q 040145          189 MNKMITA--RSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMA-------SYDAAVL-DGKLL  257 (402)
Q Consensus       189 ~~~~~~~--r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~-------~~~~~~~-~g~ly  257 (402)
                      ...+...  ......... ++++|+.+..++    ...++.+|..++.++.+........       ....+.. +++++
T Consensus       233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~  308 (662)
T 3azo_A          233 TRTLLGGPEEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIA  308 (662)
T ss_dssp             EEEEEEETTBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEE
T ss_pred             cEEeCCCCCceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEE
Confidence            2222211  122233333 667777766532    3479999998888988754322110       1123333 67787


Q ss_pred             EEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccC--CcEEEEEeCCCCceeecC
Q 040145          258 VTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELE--RMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       258 ~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~--~~~~~~yd~~~~~W~~~~  329 (402)
                      +.+.. +    ...++.+|..++....+...  ....... ..-++.++++.+..  ...++.+|..+.+.+.+.
T Consensus       309 ~~~~~-~----~~~l~~~d~~~~~~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~  376 (662)
T 3azo_A          309 VVHGK-G----AAVLGILDPESGELVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIG  376 (662)
T ss_dssp             EEEBS-S----SCEEEEEETTTTEEEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             EEEEc-C----ccEEEEEECCCCcEEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence            77653 2    24688889888777766532  1111122 23355666554432  347888999888877664

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.17  E-value=1.2  Score=44.54  Aligned_cols=249  Identities=8%  Similarity=0.011  Sum_probs=120.1

Q ss_pred             CCeEEEEEEe-CCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCC-------CCCCCce
Q 040145          104 DPWLFVFAFH-KCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD-------VDCPLDL  175 (402)
Q Consensus       104 ~~~l~~~gg~-~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~-------~~~~~~~  175 (402)
                      ++..+++..+ .+.....++++|..+++..... .+  .    ..+...+...+..|++.. .+..       .......
T Consensus       173 DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~--~----~~~~~~~wspD~~l~~~~-~~~~~~~~~~~~~~~~~~  244 (741)
T 1yr2_A          173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LK--W----VKFSGLAWLGNDALLYSR-FAEPKEGQAFQALNYNQT  244 (741)
T ss_dssp             TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EE--E----EESCCCEESTTSEEEEEE-CCCC--------CCCCCE
T ss_pred             CCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CC--C----ceeccEEEECCCEEEEEE-ecCcccccccccCCCCCE
Confidence            3444444333 3333467889999988875431 11  0    001122232243444443 2111       0112456


Q ss_pred             EEEEECCCCcee--ecCCCcc-cccceEEEEE-CCE-EEEEcCCCCCCCCCCeeEEEcCCCC--c-EEEcCCCCCCCcce
Q 040145          176 VLKYEMQKNRWT--VMNKMIT-ARSFFASGVI-GGM-IYVAGGSSADLFELDSAEVLDPVKG--N-WRTIASMGTNMASY  247 (402)
Q Consensus       176 ~~~~d~~t~~W~--~~~~~~~-~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~yd~~t~--~-W~~~~~~~~~~~~~  247 (402)
                      +++++..|+.-.  .+-..+. +......... +++ |++.... .... .+.++++|..+.  . |+.+..........
T Consensus       245 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~-~~~~-~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~  322 (741)
T 1yr2_A          245 VWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSE-GTDP-VNTVHVARVTNGKIGPVTALIPDLKAQWDF  322 (741)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC-TTCS-CCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred             EEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEc-cCCC-cceEEEEECCCCCCcccEEecCCCCceEEE
Confidence            888888776521  1211111 1222233332 454 4444332 2112 568999999877  6 87775333222221


Q ss_pred             eEEEECCEEEEEcccccCCccCCcEEEEeCCC--CCeeeccccccCCCceeEEEECCEEEEEeccC-CcEEEEEeCCCCc
Q 040145          248 DAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST--DNWESMAVGLREGWTGSSVVVYEHLFVVSELE-RMKLKVYDPSTDS  324 (402)
Q Consensus       248 ~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~yd~~~~~  324 (402)
                       ...-++.||+......   ....++.+|+.+  ..|..+-+.... ........++++++....+ ...++++|.....
T Consensus       323 -~~~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~  397 (741)
T 1yr2_A          323 -VDGVGDQLWFVSGDGA---PLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIAGNRLFASYIHDAKSQVLAFDLDGKP  397 (741)
T ss_dssp             -EEEETTEEEEEECTTC---TTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEEBTEEEEEEEETTEEEEEEEETTSCE
T ss_pred             -EeccCCEEEEEECCCC---CCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEECCEEEEEEEECCEEEEEEEeCCCCc
Confidence             2234667777654321   123689999987  468877542222 1112233478887776544 4578899976554


Q ss_pred             eeecCCCCCCccccCCeEEEE-eCC-EEEEEecCceeeeEEEEecccccc
Q 040145          325 WETIEGPPLPEQICKPFAVNA-CDC-RVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       325 W~~~~~~~~p~~~~~~~~~~~-~~~-~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                      -..+.   +|.. .....+.. .++ .|++... .-....+++.+|....
T Consensus       398 ~~~l~---~~~~-~~v~~~~~s~d~~~l~~~~s-s~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          398 AGAVS---LPGI-GSASGLSGRPGDRHAYLSFS-SFTQPATVLALDPATA  442 (741)
T ss_dssp             EEECB---CSSS-CEEEEEECCBTCSCEEEEEE-ETTEEEEEEEEETTTT
T ss_pred             eeecc---CCCC-eEEEEeecCCCCCEEEEEEc-CCCCCCEEEEEECCCC
Confidence            44443   3321 11111211 233 3444332 2233467888876443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=96.17  E-value=0.29  Score=42.90  Aligned_cols=173  Identities=13%  Similarity=0.081  Sum_probs=85.4

Q ss_pred             eEEEeecCCCcEE-eCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc-cccc
Q 040145          120 QWQVLDLTHYCWH-TIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI-TARS  197 (402)
Q Consensus       120 ~~~~~d~~~~~W~-~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~-~~r~  197 (402)
                      .+.+||..+.+-. .+..-.       ....++.+..++.+++.|+.+       ..+.+||..++.- ....+. ....
T Consensus        78 ~i~vwd~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~sgs~D-------~~v~lWd~~~~~~-~~~~~~~h~~~  142 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFEAHP-------DYIRSIAVHPTKPYVLSGSDD-------LTVKLWNWENNWA-LEQTFEGHEHF  142 (304)
T ss_dssp             EEEEEETTTCCEEEEEECCS-------SCEEEEEECSSSSEEEEEETT-------SCEEEEEGGGTTE-EEEEECCCCSC
T ss_pred             EEEEEECCCCcEEEEEeCCC-------CcEEEEEEcCCCCEEEEECCC-------CeEEEEECCCCcc-hhhhhcccCCc
Confidence            3778888776532 221111       223444454566777777763       2688899876521 111111 1111


Q ss_pred             ceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCCcceeEEEE----CCEEEEEcccccCCccC
Q 040145          198 FFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNMASYDAAVL----DGKLLVTEGWLWPFFVS  269 (402)
Q Consensus       198 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~----~g~ly~~gG~~~~~~~~  269 (402)
                      -.+++..  ++.+++.|+.      -..+.+||..+..  ......   .......+.+    ++.+++.|+.+      
T Consensus       143 v~~v~~~p~~~~~l~sgs~------D~~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~s~D------  207 (304)
T 2ynn_A          143 VMCVAFNPKDPSTFASGCL------DRTVKVWSLGQSTPNFTLTTG---QERGVNYVDYYPLPDKPYMITASDD------  207 (304)
T ss_dssp             EEEEEECTTCTTEEEEEET------TSEEEEEETTCSSCSEEEECC---CTTCEEEEEECCSTTCCEEEEEETT------
T ss_pred             EEEEEECCCCCCEEEEEeC------CCeEEEEECCCCCccceeccC---CcCcEEEEEEEEcCCCCEEEEEcCC------
Confidence            1233332  3466777776      3568888876543  111110   0011112222    45566666643      


Q ss_pred             CcEEEEeCCCCCeeeccccccCCCce-eEEEE--CCEEEEEeccCCcEEEEEeCCCCcee
Q 040145          270 PRGQVYDPSTDNWESMAVGLREGWTG-SSVVV--YEHLFVVSELERMKLKVYDPSTDSWE  326 (402)
Q Consensus       270 ~~~~~yd~~~~~W~~~~~~~~~~~~~-~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~  326 (402)
                      ..+..||..+++-.  .. +...... ..+.+  ++.+++.|+. ...+.+||..+.+-.
T Consensus       208 ~~i~iWd~~~~~~~--~~-~~~h~~~v~~~~~~p~~~~l~s~s~-Dg~i~iWd~~~~~~~  263 (304)
T 2ynn_A          208 LTIKIWDYQTKSCV--AT-LEGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSSTYKVE  263 (304)
T ss_dssp             SEEEEEETTTTEEE--EE-EECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETTTCCEE
T ss_pred             CeEEEEeCCCCccc--ee-eCCCCCCEEEEEECCCCCEEEEEcC-CCeEEEEECCCCcee
Confidence            36889998775421  11 1111111 11222  5566666665 457899999876533

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.14  E-value=0.21  Score=53.25  Aligned_cols=205  Identities=12%  Similarity=0.023  Sum_probs=100.3

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF  199 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  199 (402)
                      .+.+||..+.+...+....       .....+.+..++.+ +.++.       ...+.+||..+++-...-.........
T Consensus      1026 ~i~vwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~l-~~~~~-------dg~v~vwd~~~~~~~~~~~~~~~~v~~ 1090 (1249)
T 3sfz_A         1026 VIQVWNWQTGDYVFLQAHQ-------ETVKDFRLLQDSRL-LSWSF-------DGTVKVWNVITGRIERDFTCHQGTVLS 1090 (1249)
T ss_dssp             BEEEEETTTTEEECCBCCS-------SCEEEEEECSSSEE-EEEES-------SSEEEEEETTTTCCCEEEECCSSCCCC
T ss_pred             EEEEEECCCCceEEEecCC-------CcEEEEEEcCCCcE-EEEEC-------CCcEEEEECCCCceeEEEcccCCcEEE
Confidence            3778888887765433221       22334444345554 44444       237999999887532211111111111


Q ss_pred             EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeC
Q 040145          200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDP  277 (402)
Q Consensus       200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~  277 (402)
                      ....-+++.++.|+.+      ..+.+||..+..  .+..+........++.+  +|++++.|+.+      ..+.+||.
T Consensus      1091 ~~~s~d~~~l~s~s~d------~~v~iwd~~~~~--~~~~l~~h~~~v~~~~~s~dg~~lat~~~d------g~i~vwd~ 1156 (1249)
T 3sfz_A         1091 CAISSDATKFSSTSAD------KTAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDGILLATGDDN------GEIRIWNV 1156 (1249)
T ss_dssp             EEECSSSSSCEEECCS------SCCCEECSSSSS--CSBCCCCCSSCEEEEEECSSSSEEEEEETT------SCCCEEES
T ss_pred             EEECCCCCEEEEEcCC------CcEEEEECCCcc--eeeeeccCCCcEEEEEECCCCCEEEEEeCC------CEEEEEEC
Confidence            1222355666677653      446788887654  22222222222223333  77787877754      25788998


Q ss_pred             CCCCeeecc-c-c-----ccCCCceeEEE--ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCC
Q 040145          278 STDNWESMA-V-G-----LREGWTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDC  348 (402)
Q Consensus       278 ~~~~W~~~~-~-~-----~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~  348 (402)
                      .+++-...- + .     ......-..+.  -++++++.++   ..+.+||..+.+-.  ...... ...........++
T Consensus      1157 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~---g~v~vwd~~~g~~~--~~~~~~-~~~i~~~~~s~dg 1230 (1249)
T 3sfz_A         1157 SDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG---GYLKWWNVATGDSS--QTFYTN-GTNLKKIHVSPDF 1230 (1249)
T ss_dssp             SSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES---SSEEEBCSSSCBCC--CCCCCS-SCCCCCCEECSSS
T ss_pred             CCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC---CeEEEEECCCCcee--eeeecc-CCcccEEEECCCC
Confidence            876533221 1 0     00111111222  2566666655   37899998776432  211111 1111223344577


Q ss_pred             EEEEEecCcee
Q 040145          349 RVYVVGRNLHV  359 (402)
Q Consensus       349 ~i~v~GG~~~~  359 (402)
                      +.++.|+.+..
T Consensus      1231 ~~l~~~~~dg~ 1241 (1249)
T 3sfz_A         1231 RTYVTVDNLGI 1241 (1249)
T ss_dssp             CCEEEECTTCC
T ss_pred             CEEEEecCCcE
Confidence            77777775543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.14  E-value=1.2  Score=44.16  Aligned_cols=114  Identities=18%  Similarity=0.290  Sum_probs=70.6

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCccc--------ccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITA--------RSFFASGVIGGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ++.||+....        ..++.+|..|++  |+.-...+..        ....+.++.+++||+...       ...+.
T Consensus        77 ~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg~l~  141 (677)
T 1kb0_A           77 DGIMYVSASW--------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLI  141 (677)
T ss_dssp             TTEEEEECGG--------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEE
T ss_pred             CCEEEEECCC--------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CCEEE
Confidence            8999998642        379999999985  8775433211        112345667889888753       35689


Q ss_pred             EEcCCCCc--EEEcCC--CCC-CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eeec
Q 040145          226 VLDPVKGN--WRTIAS--MGT-NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESM  285 (402)
Q Consensus       226 ~yd~~t~~--W~~~~~--~~~-~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~  285 (402)
                      .+|..|++  |+.-..  ... .......++.++.+|+..+..+ ......++.||..+++  |+.-
T Consensus       142 alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             EEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEEec
Confidence            99998875  876422  111 1112233456888887543211 1112478999998875  8653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=96.13  E-value=0.33  Score=43.15  Aligned_cols=177  Identities=11%  Similarity=0.043  Sum_probs=88.8

Q ss_pred             CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEEC----CEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145          157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIG----GMIYVAGGSSADLFELDSAEVLDPVKG  232 (402)
Q Consensus       157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~yd~~t~  232 (402)
                      ..+++.|+...    ....+.+||..+++............-.++....    +.+++.|+.      ...+.+||..+.
T Consensus        31 ~~l~~~~s~~~----~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~  100 (357)
T 3i2n_A           31 AKFVTMGNFAR----GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF------GGNLHIWNLEAP  100 (357)
T ss_dssp             SEEEEEEC--C----CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET------TSCEEEECTTSC
T ss_pred             ceEEEecCccC----CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC------CCeEEEEeCCCC
Confidence            36666665410    1337899999888765433222222222333322    466777765      346888998876


Q ss_pred             c--EEEcCCCCCCCcceeEE--------EECCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccC-CCceeEEE
Q 040145          233 N--WRTIASMGTNMASYDAA--------VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLRE-GWTGSSVV  299 (402)
Q Consensus       233 ~--W~~~~~~~~~~~~~~~~--------~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~-~~~~~~~~  299 (402)
                      .  -..+....   ......        .-++.+++.|+.+      ..+.+||+.+..  ...+...... ......+.
T Consensus       101 ~~~~~~~~~~~---~~v~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (357)
T 3i2n_A          101 EMPVYSVKGHK---EIINAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA  171 (357)
T ss_dssp             SSCSEEECCCS---SCEEEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred             CccEEEEEecc---cceEEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence            4  22222111   111111        1256666666643      368899998764  3333221111 11111122


Q ss_pred             ------ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEe----CCEEEEEecCce
Q 040145          300 ------VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC----DCRVYVVGRNLH  358 (402)
Q Consensus       300 ------~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~----~~~i~v~GG~~~  358 (402)
                            -++.+++.|+. ...+.+||..+..-....  ...   ....++...    ++..++.|+.++
T Consensus       172 ~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~--~~~---~~v~~~~~~~~~~~~~~l~~~~~dg  234 (357)
T 3i2n_A          172 FGNAYNQEERVVCAGYD-NGDIKLFDLRNMALRWET--NIK---NGVCSLEFDRKDISMNKLVATSLEG  234 (357)
T ss_dssp             EECCCC-CCCEEEEEET-TSEEEEEETTTTEEEEEE--ECS---SCEEEEEESCSSSSCCEEEEEESTT
T ss_pred             EEeccCCCCCEEEEEcc-CCeEEEEECccCceeeec--CCC---CceEEEEcCCCCCCCCEEEEECCCC
Confidence                  36777777665 568999999887543222  111   122233333    566777776543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=96.13  E-value=0.62  Score=40.75  Aligned_cols=207  Identities=8%  Similarity=-0.035  Sum_probs=98.4

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc-cccc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT-ARSF  198 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~-~r~~  198 (402)
                      .+.++|..+..-...-...  .    ....++.+..++.+++.|+.+       ..+.+||..+++-..  .+.. ...-
T Consensus        36 ~v~lWd~~~~~~~~~~~~~--~----~~v~~~~~~~~~~~l~s~s~d-------~~i~vwd~~~~~~~~--~~~~h~~~v  100 (304)
T 2ynn_A           36 RVELWNYETQVEVRSIQVT--E----TPVRAGKFIARKNWIIVGSDD-------FRIRVFNYNTGEKVV--DFEAHPDYI  100 (304)
T ss_dssp             EEEEEETTTTEEEEEEECC--S----SCEEEEEEEGGGTEEEEEETT-------SEEEEEETTTCCEEE--EEECCSSCE
T ss_pred             cEEEEECCCCceeEEeecc--C----CcEEEEEEeCCCCEEEEECCC-------CEEEEEECCCCcEEE--EEeCCCCcE
Confidence            3777888776532211111  0    112333443466677777652       278999998875321  1111 1111


Q ss_pred             eEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEE
Q 040145          199 FASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQV  274 (402)
Q Consensus       199 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~  274 (402)
                      .+++.. ++.+++.|+.      -..+.+||..++. .....+........++.+   ++.+++.|+.+      ..+..
T Consensus       101 ~~~~~~~~~~~l~sgs~------D~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D------~~v~i  167 (304)
T 2ynn_A          101 RSIAVHPTKPYVLSGSD------DLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD------RTVKV  167 (304)
T ss_dssp             EEEEECSSSSEEEEEET------TSCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEETT------SEEEE
T ss_pred             EEEEEcCCCCEEEEECC------CCeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeCC------CeEEE
Confidence            223332 4556666765      3457888876642 111111111122223333   45677777754      36888


Q ss_pred             EeCCCCCeeeccccccCCCceeEEEE----CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEE
Q 040145          275 YDPSTDNWESMAVGLREGWTGSSVVV----YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRV  350 (402)
Q Consensus       275 yd~~~~~W~~~~~~~~~~~~~~~~~~----~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i  350 (402)
                      ||+.+..=...-. .........+.+    ++.+++.|+. ...+.+||..+.+-...-  .-. ...........++.+
T Consensus       168 wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~-D~~i~iWd~~~~~~~~~~--~~h-~~~v~~~~~~p~~~~  242 (304)
T 2ynn_A          168 WSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATL--EGH-MSNVSFAVFHPTLPI  242 (304)
T ss_dssp             EETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCEEEEEET-TSEEEEEETTTTEEEEEE--ECC-SSCEEEEEECSSSSE
T ss_pred             EECCCCCccceec-cCCcCcEEEEEEEEcCCCCEEEEEcC-CCeEEEEeCCCCccceee--CCC-CCCEEEEEECCCCCE
Confidence            9986543111100 011111111222    4556666655 568999999876422211  110 001111222346677


Q ss_pred             EEEecCcee
Q 040145          351 YVVGRNLHV  359 (402)
Q Consensus       351 ~v~GG~~~~  359 (402)
                      ++.|+.+..
T Consensus       243 l~s~s~Dg~  251 (304)
T 2ynn_A          243 IISGSEDGT  251 (304)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEcCCCe
Confidence            777876544

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=96.12  E-value=0.9  Score=42.48  Aligned_cols=197  Identities=14%  Similarity=0.162  Sum_probs=108.2

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeec--CCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVM--NKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      ++.+|++-|.         ..|.||..+++....  +.++  . .-++....+++|++-|.        ..+.||+.+++
T Consensus       158 ~~~~yfFkG~---------~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~  217 (460)
T 1qhu_A          158 DEGILFFQGN---------RKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQGN--------QFLRFNPVSGE  217 (460)
T ss_dssp             SSEEEEEETT---------EEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEETT--------EEEEECTTTCC
T ss_pred             CCeEEEEecc---------cEEEEecccceeecccCCCCC--c-cchheeeCCceEEEECC--------EEEEEcCccCc
Confidence            6788888775         689999988764431  2232  2 23444457899999873        46777776543


Q ss_pred             ------------EEEcCCCC------------------CCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCC
Q 040145          234 ------------WRTIASMG------------------TNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDN  281 (402)
Q Consensus       234 ------------W~~~~~~~------------------~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~  281 (402)
                                  |-.++...                  .+.....++.  .+|++|++-|.        ..+++|...+.
T Consensus       218 v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~--------~yWR~~~~~~~  289 (460)
T 1qhu_A          218 VPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS--------HYWRLDTNRDG  289 (460)
T ss_dssp             CCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT--------EEEECTTGGGC
T ss_pred             ccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC--------EEEEEecCCCC
Confidence                        21111100                  0011223333  37899999773        46677665443


Q ss_pred             eee--ccc---cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCC--------CCCCcc--c-cCCeEEEE
Q 040145          282 WES--MAV---GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEG--------PPLPEQ--I-CKPFAVNA  345 (402)
Q Consensus       282 W~~--~~~---~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~--------~~~p~~--~-~~~~~~~~  345 (402)
                      +..  +..   .+|.. ..++...++++|+|-|.   .+|+|+..+. .+.+.+        +.+|..  . +..+++..
T Consensus       290 ~~p~~Is~~WpglP~~-IDAAf~~~~~~yfFkG~---~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~IDAA~~~  364 (460)
T 1qhu_A          290 WHSWPIAHQWPQGPST-VDAAFSWEDKLYLIQDT---KVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFVC  364 (460)
T ss_dssp             CCCEEGGGTCTTSCSS-CSEEEEETTEEEEEETT---EEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEECC
T ss_pred             cCccchhhhccCCCCC-CcEEEEECCeEEEEeCC---EEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCcccEEEEe
Confidence            321  111   12222 22334568999999665   7999987531 222321        223332  1 12223322


Q ss_pred             -eCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeC-CCCCCCccc
Q 040145          346 -CDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDA-PDNFSDLTP  394 (402)
Q Consensus       346 -~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~-~~~~~~~~~  394 (402)
                       .++++|++-|      +..|.||...   ..+..|...+. |....++..
T Consensus       365 ~~~~ktyfFkG------~~ywryd~~~---~Pr~i~~~~~gi~~~vdAaf~  406 (460)
T 1qhu_A          365 PGSSRLHIMAG------RRLWWLDLKS---GAQATWTELPWPHEKVDGALC  406 (460)
T ss_dssp             TTCCEEEEEET------TEEEEEEGGG---GGGCCCEEECCSCSCCSEEEE
T ss_pred             CCCCEEEEEEC------CEEEEEECCC---CccchhhhCCCCCCCcCEEEe
Confidence             4689999988      3477887643   25556666555 555554433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.11  E-value=0.81  Score=41.87  Aligned_cols=212  Identities=11%  Similarity=0.078  Sum_probs=116.4

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF  199 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  199 (402)
                      .+..+++.......+....      ....+.+.-..++.||+.--.       ...++++++.....+.+...... ...
T Consensus        97 ~I~~i~~~~~~~~~~~~~~------~~~~gl~~d~~~~~ly~~D~~-------~~~I~r~~~~g~~~~~~~~~~~~-~p~  162 (386)
T 3v65_B           97 DIRQVLPHRSEYTLLLNNL------ENAIALDFHHRRELVFWSDVT-------LDRILRANLNGSNVEEVVSTGLE-SPG  162 (386)
T ss_dssp             CEEEECTTSCCCEEEECSC------SCEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCCEEEEECSSCS-CCC
T ss_pred             cceeeccCCCcEEEEecCC------CccEEEEEecCCCeEEEEeCC-------CCcEEEEecCCCCcEEEEeCCCC-Ccc
Confidence            3677777776655443211      022333333346889987532       34799999987765543221111 112


Q ss_pred             EEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCccee-EEEE--CCEEEEEcccccCCccCCcEEE
Q 040145          200 ASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYD-AAVL--DGKLLVTEGWLWPFFVSPRGQV  274 (402)
Q Consensus       200 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~-~~~~--~g~ly~~gG~~~~~~~~~~~~~  274 (402)
                      ++++  .++.||+.-..      ...++++++....-+.+..  ....... .++-  ++.||+.-...     ...+++
T Consensus       163 glavd~~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~--~~l~~P~giavdp~~g~ly~td~~~-----~~~I~r  229 (386)
T 3v65_B          163 GLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLW--QSLEKPRAIALHPMEGTIYWTDWGN-----TPRIEA  229 (386)
T ss_dssp             CEEEETTTTEEEEEETT------TTEEEECBTTSCSCEEEEC--SSCSCEEEEEEETTTTEEEEEECSS-----SCEEEE
T ss_pred             EEEEEeCCCeEEEEcCC------CCeEEEEeCCCCceEEeec--CCCCCCcEEEEEcCCCeEEEeccCC-----CCEEEE
Confidence            3333  47899998653      4578888887554333311  1111222 3333  68899874321     247999


Q ss_pred             EeCCCCCeeeccccccCCCceeEEE--ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEE
Q 040145          275 YDPSTDNWESMAVGLREGWTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYV  352 (402)
Q Consensus       275 yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v  352 (402)
                      +++....-..+.. ....+....+.  .+++||+.-.. ...|+++|++...-..+....+    ....++++.++.||+
T Consensus       230 ~~~dG~~~~~~~~-~~~~~PnGlavd~~~~~lY~aD~~-~~~I~~~d~dG~~~~~~~~~~~----~~P~giav~~~~ly~  303 (386)
T 3v65_B          230 SSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAK-HHVIERANLDGSHRKAVISQGL----PHPFAITVFEDSLYW  303 (386)
T ss_dssp             EETTSCSCEEEEC-SSCSCEEEEEEEGGGTEEEEEETT-TTEEEEECTTSCSCEEEECSSC----SSEEEEEEETTEEEE
T ss_pred             EeCCCCCcEEEEE-CCCCCeeeEEEeCCCCEEEEEECC-CCEEEEEeCCCCeeEEEEECCC----CCceEEEEECCEEEE
Confidence            9987544333321 11111112222  37899998553 6789999987543333321122    345677788999999


Q ss_pred             EecCceeeeEEEEecc
Q 040145          353 VGRNLHVAVGHITRLS  368 (402)
Q Consensus       353 ~GG~~~~~~~~v~~~~  368 (402)
                      .--..+.    |..++
T Consensus       304 td~~~~~----V~~~~  315 (386)
T 3v65_B          304 TDWHTKS----INSAN  315 (386)
T ss_dssp             EETTTTE----EEEEE
T ss_pred             eeCCCCe----EEEEE
Confidence            8754333    55555

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.11  E-value=0.79  Score=41.72  Aligned_cols=189  Identities=12%  Similarity=0.049  Sum_probs=93.2

Q ss_pred             CEEEEEeCccCCCCCCCceEEEEECCCCc------eee-cCCCc-ccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEE
Q 040145          157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNR------WTV-MNKMI-TARSFFASGVI-G-GMIYVAGGSSADLFELDSAEV  226 (402)
Q Consensus       157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~------W~~-~~~~~-~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~  226 (402)
                      +.+++.|+.+       ..+.+||..++.      -.. +.... ....-.+++.. + +.+++.|+.      ...+.+
T Consensus       126 ~~~l~s~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~i  192 (416)
T 2pm9_A          126 DNVLASGGNN-------GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS------SNFASI  192 (416)
T ss_dssp             TTBEEEECSS-------SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS------SSCEEE
T ss_pred             CCEEEEEcCC-------CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC------CCCEEE
Confidence            6777777752       268899998765      111 11111 11122233333 2 467777765      356899


Q ss_pred             EcCCCCcEEEcCCCCCC----CcceeEEEE--CC-EEEEEcccccCCccCCcEEEEeCCCCCeeeccccc-cCCCceeEE
Q 040145          227 LDPVKGNWRTIASMGTN----MASYDAAVL--DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL-REGWTGSSV  298 (402)
Q Consensus       227 yd~~t~~W~~~~~~~~~----~~~~~~~~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~~~~~~  298 (402)
                      ||..+..-...-.....    ......+.+  ++ .+++.|+.++.   ...+.+||+.+..- .+.... .....-..+
T Consensus       193 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~  268 (416)
T 2pm9_A          193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLRNANT-PLQTLNQGHQKGILSL  268 (416)
T ss_dssp             EETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETTSTTS-CSBCCCSCCSSCEEEE
T ss_pred             EECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCCCCCC-CcEEeecCccCceeEE
Confidence            99988764433222211    122223333  33 46666664321   11678899887531 111101 111111123


Q ss_pred             EE---CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCC-EEEEEecCceeeeEEEEecc
Q 040145          299 VV---YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDC-RVYVVGRNLHVAVGHITRLS  368 (402)
Q Consensus       299 ~~---~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~v~~~~  368 (402)
                      .+   ++.+++.|+. ...+.+||..+.+-...-  ..... .........++ .+++.|+.++.  ..+|.+.
T Consensus       269 ~~s~~~~~~l~s~~~-dg~v~~wd~~~~~~~~~~--~~~~~-~v~~~~~s~~~~~~l~s~~~d~~--i~iw~~~  336 (416)
T 2pm9_A          269 DWCHQDEHLLLSSGR-DNTVLLWNPESAEQLSQF--PARGN-WCFKTKFAPEAPDLFACASFDNK--IEVQTLQ  336 (416)
T ss_dssp             EECSSCSSCEEEEES-SSEEEEECSSSCCEEEEE--ECSSS-CCCCEEECTTCTTEEEECCSSSE--EEEEESC
T ss_pred             EeCCCCCCeEEEEeC-CCCEEEeeCCCCccceee--cCCCC-ceEEEEECCCCCCEEEEEecCCc--EEEEEcc
Confidence            33   5677777765 557999998876432211  11110 11122223455 68888886544  3344443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.05  E-value=0.9  Score=41.92  Aligned_cols=225  Identities=9%  Similarity=0.038  Sum_probs=118.8

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.||+...    ....+.++|+.++.-..+.....      ..+ .+....++.||+.....      ...++++|+.+
T Consensus       141 ~g~lyv~d~----~~~~I~~id~~~g~~~~~~~~~~------~~~-ia~~~~g~~l~~~d~~~------~~~I~~~d~~~  203 (409)
T 3hrp_A          141 NNTVLAYQR----DDPRVRLISVDDNKVTTVHPGFK------GGK-PAVTKDKQRVYSIGWEG------THTVYVYMKAS  203 (409)
T ss_dssp             TTEEEEEET----TTTEEEEEETTTTEEEEEEETCC------BCB-CEECTTSSEEEEEBSST------TCEEEEEEGGG
T ss_pred             CCCEEEEec----CCCcEEEEECCCCEEEEeeccCC------CCc-eeEecCCCcEEEEecCC------CceEEEEEcCC
Confidence            566888753    23458889998877655432221      112 22222344677665421      12799999976


Q ss_pred             Cc-eeecCCCc--ccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCC---CCCCCcc-e-eEEEE-
Q 040145          184 NR-WTVMNKMI--TARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS---MGTNMAS-Y-DAAVL-  252 (402)
Q Consensus       184 ~~-W~~~~~~~--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~~~~-~-~~~~~-  252 (402)
                      +. ...+..+.  .....+++++.  ++.||+...       ...+++||+.+.....+..   ....... . ..++. 
T Consensus       204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p  276 (409)
T 3hrp_A          204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF  276 (409)
T ss_dssp             TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred             CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence            54 23331111  11222334443  578999432       3479999998877554411   1111122 1 34443 


Q ss_pred             -CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccc-c----------CCCcee-EEEE--CCEEEEEeccCCcEEEE
Q 040145          253 -DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL-R----------EGWTGS-SVVV--YEHLFVVSELERMKLKV  317 (402)
Q Consensus       253 -~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~----------~~~~~~-~~~~--~~~l~~~gg~~~~~~~~  317 (402)
                       ++.||+....      .+.+++||+... ...+.... .          ...... .+++  +|.||+........|.+
T Consensus       277 ~~g~lyv~d~~------~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~  349 (409)
T 3hrp_A          277 VDSNFYMSDQN------LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRK  349 (409)
T ss_dssp             TTTEEEEEETT------TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEE
T ss_pred             CCCEEEEEeCC------CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEE
Confidence             5889997543      247899987654 22221100 0          001111 2333  67899885514678999


Q ss_pred             EeCCCCceeecCCCC----------CCccccCCeEEEEe-CCEEEEEecCcee
Q 040145          318 YDPSTDSWETIEGPP----------LPEQICKPFAVNAC-DCRVYVVGRNLHV  359 (402)
Q Consensus       318 yd~~~~~W~~~~~~~----------~p~~~~~~~~~~~~-~~~i~v~GG~~~~  359 (402)
                      +|+.+..-..+.+.+          .........++++. ++.|||....++.
T Consensus       350 ~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~  402 (409)
T 3hrp_A          350 LDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA  402 (409)
T ss_dssp             EETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred             EECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence            997666655554311          00112344566654 5889998765443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.04  E-value=0.75  Score=40.94  Aligned_cols=215  Identities=12%  Similarity=0.108  Sum_probs=108.1

Q ss_pred             CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCC-Ccccc-cceEEEEEC
Q 040145          128 HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK-MITAR-SFFASGVIG  205 (402)
Q Consensus       128 ~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~-~~~~r-~~~~~~~~~  205 (402)
                      -.+|+.+.. +..     ..+..+.....+.+|+.|..        ..+++-+-.-.+|+.+.. ...+. ....+...+
T Consensus        24 g~~W~~~~~-~~~-----~~~~~v~~~~~~~~~~~G~~--------g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~   89 (327)
T 2xbg_A           24 YNPWEAIQL-PTT-----ATILDMSFIDRHHGWLVGVN--------ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG   89 (327)
T ss_dssp             SCCEEEEEC-SCS-----SCEEEEEESSSSCEEEEETT--------TEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET
T ss_pred             CCCceEeec-CCC-----CcEEEEEECCCCcEEEEcCC--------CeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC
Confidence            456887752 211     23444444345678886532        134443323348998753 22222 233444456


Q ss_pred             CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCC-CCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCee
Q 040145          206 GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMG-TNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE  283 (402)
Q Consensus       206 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~  283 (402)
                      +.+|++|..       ..++.-+=.-.+|+.+.... .+......+. -++.+|+.+..       ..+++-+-.-.+|+
T Consensus        90 ~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------g~v~~S~DgG~tW~  155 (327)
T 2xbg_A           90 NEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNV-------GAIYRTKDSGKNWQ  155 (327)
T ss_dssp             TEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETT-------CCEEEESSTTSSEE
T ss_pred             CeEEEEECC-------CeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCC-------ccEEEEcCCCCCCE
Confidence            788887632       22333222245799886432 1112223332 36788887642       13555444566899


Q ss_pred             eccccccCCCceeEEEECCEEEEEeccCCcEEEEE-eCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeee
Q 040145          284 SMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVY-DPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAV  361 (402)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~y-d~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~  361 (402)
                      .+..+.+.........-++.++++|.. . .+++- |....+|+.+.. +.+   .....++ ..++.+|+++...    
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-G-~~~~S~d~gG~tW~~~~~-~~~---~~~~~~~~~~~g~~~~~~~~G----  225 (327)
T 2xbg_A          156 ALVQEAIGVMRNLNRSPSGEYVAVSSR-G-SFYSTWEPGQTAWEPHNR-TTS---RRLHNMGFTPDGRLWMIVNGG----  225 (327)
T ss_dssp             EEECSCCCCEEEEEECTTSCEEEEETT-S-SEEEEECTTCSSCEEEEC-CSS---SCEEEEEECTTSCEEEEETTT----
T ss_pred             EeecCCCcceEEEEEcCCCcEEEEECC-C-cEEEEeCCCCCceeECCC-CCC---CccceeEECCCCCEEEEeCCc----
Confidence            987533332221112225677766533 2 34444 444678999852 222   2223333 3567888877532    


Q ss_pred             EEEEecccccccCceeeeEEEEeCC
Q 040145          362 GHITRLSTSEKKWSFSVQWQVVDAP  386 (402)
Q Consensus       362 ~~v~~~~~~~~~~~~~~~W~~~~~~  386 (402)
                       .++....     +...+|+++..|
T Consensus       226 -~~~~s~~-----D~G~tW~~~~~~  244 (327)
T 2xbg_A          226 -KIAFSDP-----DNSENWGELLSP  244 (327)
T ss_dssp             -EEEEEET-----TEEEEECCCBCT
T ss_pred             -eEEEecC-----CCCCeeEeccCC
Confidence             1333310     123478777655

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=95.99  E-value=0.47  Score=47.13  Aligned_cols=145  Identities=10%  Similarity=0.030  Sum_probs=74.1

Q ss_pred             CCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCC-CeeeccccccCCCc---
Q 040145          221 LDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTD-NWESMAVGLREGWT---  294 (402)
Q Consensus       221 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~~---  294 (402)
                      ...++++|..++.-..+............+..  +|+..+++..+.. .....+..+|+.++ ....+.......+.   
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            45789999998876655322111122222333  6664444333211 11237899999888 66655421111111   


Q ss_pred             -eeEEEE--CCEEEEEeccC-CcEEEEEeCCCCceeecCCCCCCccccCCeE-EE-EeCC-EEEEEecCceeeeEEEEec
Q 040145          295 -GSSVVV--YEHLFVVSELE-RMKLKVYDPSTDSWETIEGPPLPEQICKPFA-VN-ACDC-RVYVVGRNLHVAVGHITRL  367 (402)
Q Consensus       295 -~~~~~~--~~~l~~~gg~~-~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~-~~-~~~~-~i~v~GG~~~~~~~~v~~~  367 (402)
                       .....-  +|++++.+..+ ...++.+|........+..  -.   ..... +. ..++ .||+.+.........++.+
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--~~---~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--GE---WEVTNFAGFDPKGTRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--SS---SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--CC---eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence             112233  77766655443 4578888877666666642  11   11112 12 2344 5666665544334567777


Q ss_pred             cccc
Q 040145          368 STSE  371 (402)
Q Consensus       368 ~~~~  371 (402)
                      |...
T Consensus       388 d~~~  391 (706)
T 2z3z_A          388 DIKG  391 (706)
T ss_dssp             ETTC
T ss_pred             EcCC
Confidence            6533

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=95.97  E-value=1  Score=43.37  Aligned_cols=189  Identities=11%  Similarity=0.014  Sum_probs=90.4

Q ss_pred             ceEEEEcc--CCEEEEEeCccCCCCCCCceEEEEECCCC------ceeecCCCcccccc-eEEEEE-CCEEEEEcCCCCC
Q 040145          148 FRCVSIPR--EGTLFVCGGMVSDVDCPLDLVLKYEMQKN------RWTVMNKMITARSF-FASGVI-GGMIYVAGGSSAD  217 (402)
Q Consensus       148 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~d~~t~------~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~  217 (402)
                      ..++++..  ++.+++.|+.+       ..+.+||..++      ....+..+...... ..++.. +++.+++++.+..
T Consensus        67 v~~~~~sp~~~~~~l~s~~~d-------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  139 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDES-------GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD  139 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETT-------SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred             EEEEEECcCCCCCEEEEecCC-------CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCC
Confidence            34555555  67777777752       26888998655      33332222211111 222222 4555556554322


Q ss_pred             CCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCC-
Q 040145          218 LFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGW-  293 (402)
Q Consensus       218 ~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~-  293 (402)
                      .  ...+.+||... .-..   +.........+.+  ++. +++.|+.+      ..+..||..+.+-...-....... 
T Consensus       140 ~--~~~v~~~d~~~-~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~  207 (615)
T 1pgu_A          140 N--FGVFISWDSGN-SLGE---VSGHSQRINACHLKQSRPMRSMTVGDD------GSVVFYQGPPFKFSASDRTHHKQGS  207 (615)
T ss_dssp             C--SEEEEETTTCC-EEEE---CCSCSSCEEEEEECSSSSCEEEEEETT------TEEEEEETTTBEEEEEECSSSCTTC
T ss_pred             C--ccEEEEEECCC-ccee---eecCCccEEEEEECCCCCcEEEEEeCC------CcEEEEeCCCcceeeeecccCCCCc
Confidence            1  35678888332 1122   2222222222333  443 56666543      368889977654322111011100 


Q ss_pred             ceeEEEE--C-CEEEEEeccCCcEEEEEeCCCCceeecCCCCC---CccccCCeEEEEeCCEEEEEecCcee
Q 040145          294 TGSSVVV--Y-EHLFVVSELERMKLKVYDPSTDSWETIEGPPL---PEQICKPFAVNACDCRVYVVGRNLHV  359 (402)
Q Consensus       294 ~~~~~~~--~-~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~---p~~~~~~~~~~~~~~~i~v~GG~~~~  359 (402)
                      .-.++.+  + +..++.|+. ...+.+||..+.+....-  ..   ... ....++...++..++.|+.++.
T Consensus       208 ~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~--~~~~~~~~-~~v~~~~~~~~~~l~~~~~d~~  275 (615)
T 1pgu_A          208 FVRDVEFSPDSGEFVITVGS-DRKISCFDGKSGEFLKYI--EDDQEPVQ-GGIFALSWLDSQKFATVGADAT  275 (615)
T ss_dssp             CEEEEEECSTTCCEEEEEET-TCCEEEEETTTCCEEEEC--CBTTBCCC-SCEEEEEESSSSEEEEEETTSE
T ss_pred             eEEEEEECCCCCCEEEEEeC-CCeEEEEECCCCCEeEEe--cccccccC-CceEEEEEcCCCEEEEEcCCCc
Confidence            1112233  4 677777665 457999999876543321  01   111 1112333337777888776533

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.94  E-value=0.2  Score=46.51  Aligned_cols=189  Identities=11%  Similarity=0.031  Sum_probs=93.3

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEc-cCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIP-REGTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      ++.+++.|+.++    .+.+||..+..-..+-......    ..-.++.+. .++.+++.|+.+       ..+.+||..
T Consensus       131 ~~~~lasGs~dg----~i~lWd~~~~~~~~~~~~~gH~----~~V~~l~f~p~~~~~l~s~s~D-------~~v~iwd~~  195 (435)
T 4e54_B          131 HPSTVAVGSKGG----DIMLWNFGIKDKPTFIKGIGAG----GSITGLKFNPLNTNQFYASSME-------GTTRLQDFK  195 (435)
T ss_dssp             CTTCEEEEETTS----CEEEECSSCCSCCEEECCCSSS----CCCCEEEECSSCTTEEEEECSS-------SCEEEEETT
T ss_pred             CCCEEEEEeCCC----EEEEEECCCCCceeEEEccCCC----CCEEEEEEeCCCCCEEEEEeCC-------CEEEEeecc
Confidence            445555554433    2778887766533222111000    112333332 356677777763       268899998


Q ss_pred             CCceeecCCCccc-ccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CC-EEE
Q 040145          183 KNRWTVMNKMITA-RSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DG-KLL  257 (402)
Q Consensus       183 t~~W~~~~~~~~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g-~ly  257 (402)
                      ++..+.+...... ....++.. -++++++.|+.      ...+.+||.....   +..+........++.+  ++ .++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~------dg~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~  266 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDN------VGNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFL  266 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS------SSBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEE
T ss_pred             CCceeEEeccCCCCccEEEEEECCCCCEEEEEeC------CCcEeeeccCcce---eEEEecccceEEeeeecCCCceEE
Confidence            7765443322111 11122333 25677777775      4568888886543   2222222222233333  33 466


Q ss_pred             EEcccccCCccCCcEEEEeCCCCCeeec-cccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCC
Q 040145          258 VTEGWLWPFFVSPRGQVYDPSTDNWESM-AVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       258 ~~gG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      +.|+.+      ..+.+||+.+.+-... .........-.++.+  ++..++.|+. ...+.+||..+.
T Consensus       267 ~s~s~d------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~-D~~i~iwd~~~~  328 (435)
T 4e54_B          267 ATASVD------QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ-KSEIRVYSASQW  328 (435)
T ss_dssp             EEEETT------SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES-SSCEEEEESSSS
T ss_pred             EEecCc------ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC-CCEEEEEECCCC
Confidence            666643      2577888876542211 110111111111222  5666677665 457888998754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=95.92  E-value=0.97  Score=41.18  Aligned_cols=214  Identities=14%  Similarity=0.116  Sum_probs=101.4

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF  199 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  199 (402)
                      .+.+||..+.+-...  +....    ....++.+..++..++.|+.+       ..+.+||..+++....-.  ......
T Consensus       146 ~i~iwd~~~~~~~~~--~~~h~----~~v~~~~~~p~~~~l~s~s~d-------~~v~iwd~~~~~~~~~~~--~~~~v~  210 (393)
T 1erj_A          146 LIRIWDIENRKIVMI--LQGHE----QDIYSLDYFPSGDKLVSGSGD-------RTVRIWDLRTGQCSLTLS--IEDGVT  210 (393)
T ss_dssp             CEEEEETTTTEEEEE--ECCCS----SCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEEE--CSSCEE
T ss_pred             eEEEEECCCCcEEEE--EccCC----CCEEEEEEcCCCCEEEEecCC-------CcEEEEECCCCeeEEEEE--cCCCcE
Confidence            377888887654322  11100    122334443456666666652       378899998876433211  111122


Q ss_pred             EEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEE-cCCC----CCCCcceeEEEE--CCEEEEEcccccCCccCC
Q 040145          200 ASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRT-IASM----GTNMASYDAAVL--DGKLLVTEGWLWPFFVSP  270 (402)
Q Consensus       200 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~----~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~  270 (402)
                      .++..  ++++++.|+.      ...+.+||..++.-.. +...    .........+.+  ++++++.|+.+      .
T Consensus       211 ~~~~~~~~~~~l~~~s~------d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d------~  278 (393)
T 1erj_A          211 TVAVSPGDGKYIAAGSL------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD------R  278 (393)
T ss_dssp             EEEECSTTCCEEEEEET------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT------S
T ss_pred             EEEEECCCCCEEEEEcC------CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC------C
Confidence            23332  5677777776      3458899988775432 2111    111112222333  67777777653      3


Q ss_pred             cEEEEeCCCCCeeeccc----------cccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCcccc
Q 040145          271 RGQVYDPSTDNWESMAV----------GLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQIC  338 (402)
Q Consensus       271 ~~~~yd~~~~~W~~~~~----------~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~  338 (402)
                      .+..||+.+..-.....          .......-..+..  ++..++.|+. ...+.+||..+..-...    +.....
T Consensus       279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-D~~v~iwd~~~~~~~~~----l~~h~~  353 (393)
T 1erj_A          279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DRGVLFWDKKSGNPLLM----LQGHRN  353 (393)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TSEEEEEETTTCCEEEE----EECCSS
T ss_pred             EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCeEEEE----ECCCCC
Confidence            68888886532111000          0000000111222  4566666665 55789999887642221    111101


Q ss_pred             CCeEEEEe-------CCEEEEEecCceeeeEEEEec
Q 040145          339 KPFAVNAC-------DCRVYVVGRNLHVAVGHITRL  367 (402)
Q Consensus       339 ~~~~~~~~-------~~~i~v~GG~~~~~~~~v~~~  367 (402)
                      .-.+++..       ++.+++.||.+..  ..+|.+
T Consensus       354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~--i~iW~~  387 (393)
T 1erj_A          354 SVISVAVANGSSLGPEYNVFATGSGDCK--ARIWKY  387 (393)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSE--EEEEEE
T ss_pred             CEEEEEecCCcCcCCCCCEEEEECCCCc--EEECcc
Confidence            11233332       4678888886654  334544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=95.90  E-value=0.94  Score=40.90  Aligned_cols=215  Identities=12%  Similarity=0.009  Sum_probs=99.0

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc---CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR---EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR  196 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r  196 (402)
                      .+.+||..+..-.......       ..........   ++.+++.|+.+       ..+.+||..++.-...  +....
T Consensus       123 ~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~d~~~~~~~~~--~~~~~  186 (408)
T 4a11_B          123 TLKVWDTNTLQTADVFNFE-------ETVYSHHMSPVSTKHCLVAVGTRG-------PKVQLCDLKSGSCSHI--LQGHR  186 (408)
T ss_dssp             EEEEEETTTTEEEEEEECS-------SCEEEEEECSSCSSCCEEEEEESS-------SSEEEEESSSSCCCEE--ECCCC
T ss_pred             eEEEeeCCCCccceeccCC-------CceeeeEeecCCCCCcEEEEEcCC-------CeEEEEeCCCcceeee--ecCCC
Confidence            3778888877644332222       1112222211   33466666652       3689999987642221  11111


Q ss_pred             cc-eEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCC------------CCCCCcceeEEEE--CCEEE
Q 040145          197 SF-FASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGN--WRTIAS------------MGTNMASYDAAVL--DGKLL  257 (402)
Q Consensus       197 ~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~------------~~~~~~~~~~~~~--~g~ly  257 (402)
                      .. .+++.. ++ .+++.|+.      ...+.+||..+..  ...+..            ..........+.+  ++..+
T Consensus       187 ~~v~~~~~~~~~~~ll~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  260 (408)
T 4a11_B          187 QEILAVSWSPRYDYILATASA------DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL  260 (408)
T ss_dssp             SCEEEEEECSSCTTEEEEEET------TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred             CcEEEEEECCCCCcEEEEEcC------CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence            11 222332 23 36777765      3457888886643  222210            0111112222333  66666


Q ss_pred             EEcccccCCccCCcEEEEeCCCCCeeeccc--c--ccCCCceeEE-EECCEEEEEeccCCcEEEEEeCCCCceeecCCCC
Q 040145          258 VTEGWLWPFFVSPRGQVYDPSTDNWESMAV--G--LREGWTGSSV-VVYEHLFVVSELERMKLKVYDPSTDSWETIEGPP  332 (402)
Q Consensus       258 ~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~--~~~~~~~~~~-~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~  332 (402)
                      +.|+.+      ..+.+||+.+++-.....  .  .......... ...+..+++++. ...+.+||..+.+-...-  .
T Consensus       261 ~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~--~  331 (408)
T 4a11_B          261 LTVGTD------NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY-GSTIAVYTVYSGEQITML--K  331 (408)
T ss_dssp             EEEETT------SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE-TTEEEEEETTTCCEEEEE--C
T ss_pred             EEecCC------CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec-CCEEEEEECcCCcceeee--c
Confidence            766643      368999998765322211  0  0011111111 112233334443 458999998776433221  1


Q ss_pred             CCccccCCeEEEEeCCEEEEEecCceeeeEEEEecc
Q 040145          333 LPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLS  368 (402)
Q Consensus       333 ~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~  368 (402)
                      .. ...........++++++.|+.+..  ..+|.++
T Consensus       332 ~~-~~~v~~~~~s~~~~~l~s~~~dg~--i~iw~~~  364 (408)
T 4a11_B          332 GH-YKTVDCCVFQSNFQELYSGSRDCN--ILAWVPS  364 (408)
T ss_dssp             CC-SSCEEEEEEETTTTEEEEEETTSC--EEEEEEC
T ss_pred             cC-CCeEEEEEEcCCCCEEEEECCCCe--EEEEeCC
Confidence            11 101112223456778888876544  3344443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.88  Score=40.48  Aligned_cols=237  Identities=13%  Similarity=0.045  Sum_probs=110.5

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEE-eC--CCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWH-TI--PAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE  180 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~-~l--~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d  180 (402)
                      ++.+++.|+.+..    +.+||..+.+-. .+  .....-.  ....  .++...++.|.+...        ...+.+||
T Consensus        47 d~~~l~sg~~Dg~----v~iwd~~~~~~~~~~~~~~v~~~~--~~~~--~~s~s~D~~i~~w~~--------~~~~~~~~  110 (343)
T 3lrv_A           47 DKWVCMCRCEDGA----LHFTQLKDSKTITTITTPNPRTGG--EHPA--IISRGPCNRLLLLYP--------GNQITILD  110 (343)
T ss_dssp             EEEEEEEEEETTE----EEEEEESSSSCEEEEEEECCCTTC--CCCS--EEEECSTTEEEEEET--------TTEEEEEE
T ss_pred             CCCEEEEECCCCc----EEEEECCCCcEEEEEecCCceeee--eCCc--eEEecCCCeEEEEEc--------cCceEEee
Confidence            4556666655443    677777665421 11  1111000  0011  233323555655532        22566777


Q ss_pred             CCCCceeecCCCcccccceEEEEE---CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEE
Q 040145          181 MQKNRWTVMNKMITARSFFASGVI---GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKL  256 (402)
Q Consensus       181 ~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~l  256 (402)
                      ..+++-...........-..+...   ++.+++.|+.      -..+.+||..++.-...............+.. ++.+
T Consensus       111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~  184 (343)
T 3lrv_A          111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADN------RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL  184 (343)
T ss_dssp             TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEET------TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE
T ss_pred             cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeC------CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE
Confidence            777652211111111111122221   4566777775      34688999988765433222211111222222 6788


Q ss_pred             EEEcccccCCccCCcEEEEeCCCCCee--eccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCcee-ecCCC
Q 040145          257 LVTEGWLWPFFVSPRGQVYDPSTDNWE--SMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWE-TIEGP  331 (402)
Q Consensus       257 y~~gG~~~~~~~~~~~~~yd~~~~~W~--~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~-~~~~~  331 (402)
                      ++.|+.+      ..+.+||+.+++-.  .+..  .....-..+.+  ++..++.|+. . .+.+||..+..-. .+...
T Consensus       185 lasg~~d------g~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~~-~-~v~iwd~~~~~~~~~~~~~  254 (343)
T 3lrv_A          185 LALYSPD------GILDVYNLSSPDQASSRFPV--DEEAKIKEVKFADNGYWMVVECD-Q-TVVCFDLRKDVGTLAYPTY  254 (343)
T ss_dssp             EEEECTT------SCEEEEESSCTTSCCEECCC--CTTSCEEEEEECTTSSEEEEEES-S-BEEEEETTSSTTCBSSCCC
T ss_pred             EEEEcCC------CEEEEEECCCCCCCccEEec--cCCCCEEEEEEeCCCCEEEEEeC-C-eEEEEEcCCCCcceeeccc
Confidence            8887754      37899999877532  2221  01111112333  6677777663 3 8999999765321 12110


Q ss_pred             CCCccccCCeEEE-EeCCEEEEEecC-ceeeeEEEEecccccccC
Q 040145          332 PLPEQICKPFAVN-ACDCRVYVVGRN-LHVAVGHITRLSTSEKKW  374 (402)
Q Consensus       332 ~~p~~~~~~~~~~-~~~~~i~v~GG~-~~~~~~~v~~~~~~~~~~  374 (402)
                      ..........+++ ..+++.++.|+. ++.  ..+|.++...+.|
T Consensus       255 ~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~--i~v~~~~~~~~~~  297 (343)
T 3lrv_A          255 TIPEFKTGTVTYDIDDSGKNMIAYSNESNS--LTIYKFDKKTKNW  297 (343)
T ss_dssp             BC-----CCEEEEECTTSSEEEEEETTTTE--EEEEEECTTTCSE
T ss_pred             ccccccccceEEEECCCCCEEEEecCCCCc--EEEEEEcccccce
Confidence            0000001111233 346676666543 332  5677776555534

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=95.88  E-value=0.6  Score=42.18  Aligned_cols=186  Identities=9%  Similarity=-0.021  Sum_probs=95.5

Q ss_pred             eEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc-CCEEEEEeCccCCCCCCCceEEEEECCCC
Q 040145          106 WLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR-EGTLFVCGGMVSDVDCPLDLVLKYEMQKN  184 (402)
Q Consensus       106 ~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~d~~t~  184 (402)
                      .+++.++.+.    .+.+||..+.+...........    ....++.... ++.+++.|+.+       ..+.+||..++
T Consensus        87 ~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~  151 (383)
T 3ei3_B           87 TTVAVGSKGG----DIILWDYDVQNKTSFIQGMGPG----DAITGMKFNQFNTNQLFVSSIR-------GATTLRDFSGS  151 (383)
T ss_dssp             TEEEEEEBTS----CEEEEETTSTTCEEEECCCSTT----CBEEEEEEETTEEEEEEEEETT-------TEEEEEETTSC
T ss_pred             CEEEEEcCCC----eEEEEeCCCcccceeeecCCcC----CceeEEEeCCCCCCEEEEEeCC-------CEEEEEECCCC
Confidence            4555554433    3778888877655433221111    2223333433 45677777652       37889999876


Q ss_pred             ceeecCCCccc-ccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCE-EEEE
Q 040145          185 RWTVMNKMITA-RSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGK-LLVT  259 (402)
Q Consensus       185 ~W~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~-ly~~  259 (402)
                      ....+...... ....+++.. ++..++.|+.      ...+.+||.....-..+..   .......+.+  ++. +++.
T Consensus       152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s  222 (383)
T 3ei3_B          152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS------TGRLLLLGLDGHEIFKEKL---HKAKVTHAEFNPRCDWLMAT  222 (383)
T ss_dssp             EEEEEECCCCSSCCEEEEEEETTTTEEEEEET------TSEEEEEETTSCEEEEEEC---SSSCEEEEEECSSCTTEEEE
T ss_pred             ceEEEeccCCCCCCeEEEEECCCCCEEEEECC------CCCEEEEECCCCEEEEecc---CCCcEEEEEECCCCCCEEEE
Confidence            65554332211 112223332 4566666665      4578899985443333321   1122222333  455 6777


Q ss_pred             cccccCCccCCcEEEEeCCCCCe--eeccccccCCCceeEEEE---CCEEEEEeccCCcEEEEEeCCCC
Q 040145          260 EGWLWPFFVSPRGQVYDPSTDNW--ESMAVGLREGWTGSSVVV---YEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       260 gG~~~~~~~~~~~~~yd~~~~~W--~~~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      |+.+      ..+.+||+.+..-  ..+.. ......-..+.+   ++.+++.|+. ...+.+||..+.
T Consensus       223 ~~~d------~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~~~~~-d~~i~iwd~~~~  283 (383)
T 3ei3_B          223 SSVD------ATVKLWDLRNIKDKNSYIAE-MPHEKPVNAAYFNPTDSTKLLTTDQ-RNEIRVYSSYDW  283 (383)
T ss_dssp             EETT------SEEEEEEGGGCCSTTCEEEE-EECSSCEEEEEECTTTSCEEEEEES-SSEEEEEETTBT
T ss_pred             EeCC------CEEEEEeCCCCCcccceEEE-ecCCCceEEEEEcCCCCCEEEEEcC-CCcEEEEECCCC
Confidence            7653      3688999876321  11111 111111112232   5677777665 568999998764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.87  E-value=0.41  Score=42.05  Aligned_cols=117  Identities=15%  Similarity=0.071  Sum_probs=55.1

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccC--CCCC--CCceEEEE
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVS--DVDC--PLDLVLKY  179 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~--~~~~--~~~~~~~~  179 (402)
                      +..+|+...    ....+.++|+.+.+-...-..+.+........+.+....+..||+......  ....  ....+.+|
T Consensus        45 g~~l~v~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~  120 (337)
T 1pby_B           45 GRIAYATVN----KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY  120 (337)
T ss_dssp             SSEEEEEET----TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             CCEEEEEeC----CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEE
Confidence            446676652    233588899887764332112110000001122222222346777642100  0000  13589999


Q ss_pred             ECCCCceeecCCCcccccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145          180 EMQKNRWTVMNKMITARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGNWR  235 (402)
Q Consensus       180 d~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  235 (402)
                      |..+++....-+.  ......++.. ++ .||+.+         ..+.+||..+++-.
T Consensus       121 d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~---------~~i~~~d~~~~~~~  167 (337)
T 1pby_B          121 DAETLSRRKAFEA--PRQITMLAWARDGSKLYGLG---------RDLHVMDPEAGTLV  167 (337)
T ss_dssp             ETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEES---------SSEEEEETTTTEEE
T ss_pred             ECCCCcEEEEEeC--CCCcceeEECCCCCEEEEeC---------CeEEEEECCCCcEe
Confidence            9988765432111  1122223332 33 466662         35889999887643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.86  E-value=1.8  Score=43.74  Aligned_cols=182  Identities=12%  Similarity=0.113  Sum_probs=100.5

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC----ceee-cC-CCcccccceEEEE--ECCEEEEEcCCCCCCCC
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN----RWTV-MN-KMITARSFFASGV--IGGMIYVAGGSSADLFE  220 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~----~W~~-~~-~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~  220 (402)
                      +.+....++.||+.-..       ...++++++...    .... +. .+..   ..++++  .+++||+.-..      
T Consensus       428 gl~~d~~~~~lY~sD~~-------~~~I~~~~l~g~~~~~~~~~vi~~~l~~---P~GLAvD~~~~~LY~tD~~------  491 (791)
T 3m0c_C          428 ALDTEVASNRIYWSDLS-------QRMICSTQLDRAHGVSSYDTVISRDIQA---PDGLAVDWIHSNIYWTDSV------  491 (791)
T ss_dssp             EEEEETTTTEEEEEETT-------TTEEEEEEC--------CEEEECSSCSC---CCEEEEETTTTEEEEEETT------
T ss_pred             EEeecccCCeeEEeecc-------ceeEEEEeccCCCCCcceeEEEecCCCC---cceeeeeecCCcEEEEecC------
Confidence            33343346789988543       346888887642    2222 22 1211   223444  46799998653      


Q ss_pred             CCeeEEEcCCCCcEEEcC--CCCCCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCc-e
Q 040145          221 LDSAEVLDPVKGNWRTIA--SMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWT-G  295 (402)
Q Consensus       221 ~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~  295 (402)
                      ...|+++++....-+.+.  .+..+   .+.++  .+|.||+.--..     ...|+++++....-..+.. ....+- +
T Consensus       492 ~~~I~v~~ldG~~~~~l~~~~l~~P---~gIaVDp~~g~LYwtD~g~-----~~~I~~~~~dG~~~~~lv~-~~l~~P~G  562 (791)
T 3m0c_C          492 LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGVDIYSLVT-ENIQWPNG  562 (791)
T ss_dssp             TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCCEEEEEC-SSCSCEEE
T ss_pred             CCeEEEEeCCCCeEEEEEeCCCCCc---ceEEEecCCCCEEEecCCC-----CCeEEEEecCCCceEEEEe-CCCCCceE
Confidence            567999998866555442  22222   12333  258899975211     1478899887554333322 111111 1


Q ss_pred             eEEE-ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCce
Q 040145          296 SSVV-VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLH  358 (402)
Q Consensus       296 ~~~~-~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~  358 (402)
                      .++- .+++||+.-.. ...|+++|++...=..+..  ........+++.+.+++||+.--..+
T Consensus       563 LavD~~~~~LYwaD~~-~~~I~~~d~dG~~~~~v~~--~~~~l~~P~glav~~~~lYwtD~~~~  623 (791)
T 3m0c_C          563 ITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILE--DEKRLAHPFSLAVFEDKVFWTDIINE  623 (791)
T ss_dssp             EEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEEE--CTTTTSSEEEEEEETTEEEEEETTTT
T ss_pred             EEEecCCCeEEEEeCC-CCcEEEEecCCCceEEEec--CCCccCCCCEEEEeCCEEEEEECCCC
Confidence            2222 37899998543 6789999997654333321  11122345688889999999875443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=95.86  E-value=0.86  Score=40.11  Aligned_cols=151  Identities=11%  Similarity=0.067  Sum_probs=73.2

Q ss_pred             EEEEccCCE-EEEEeCccCCCCCCCceEEEEEC-CCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEE
Q 040145          150 CVSIPREGT-LFVCGGMVSDVDCPLDLVLKYEM-QKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       150 ~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~d~-~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      ++.+..++. .++.|+.+       ..+.+||. .++....+........-..+....+.+++.|+.      ...+.+|
T Consensus        61 ~~~~~~~~~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~------d~~i~iw  127 (342)
T 1yfq_A           61 CCNFIDNTDLQIYVGTVQ-------GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW------DGLIEVI  127 (342)
T ss_dssp             EEEEEESSSEEEEEEETT-------SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEET------TSEEEEE
T ss_pred             EEEECCCCCcEEEEEcCC-------CeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcC------CCeEEEE
Confidence            333333566 67777652       27999999 888765554311122222333332555555554      4567888


Q ss_pred             cCCCCc-------EEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCC-CC--eeeccccccCCCceeE
Q 040145          228 DPVKGN-------WRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPST-DN--WESMAVGLREGWTGSS  297 (402)
Q Consensus       228 d~~t~~-------W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~-~~--W~~~~~~~~~~~~~~~  297 (402)
                      |..+..       .+.+..+.....-.......+. ++.|+.+      ..+..||+.+ ..  ........... ....
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~-i~~i  199 (342)
T 1yfq_A          128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNN------SQVQWFRLPLCEDDNGTIEESGLKYQ-IRDV  199 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEEST------TEEEEEESSCCTTCCCEEEECSCSSC-EEEE
T ss_pred             cccccccccccccCCeeeEEeeCCceEEEEecCCc-EEEEeCC------CeEEEEECCccccccceeeecCCCCc-eeEE
Confidence            876400       1122222222122222333444 4444432      3789999887 43  22222111111 1111


Q ss_pred             EEE--CCEEEEEeccCCcEEEEEeCCC
Q 040145          298 VVV--YEHLFVVSELERMKLKVYDPST  322 (402)
Q Consensus       298 ~~~--~~~l~~~gg~~~~~~~~yd~~~  322 (402)
                      +..  ++.++++|+. ...+.+||...
T Consensus       200 ~~~~~~~~~l~~~~~-dg~i~i~~~~~  225 (342)
T 1yfq_A          200 ALLPKEQEGYACSSI-DGRVAVEFFDD  225 (342)
T ss_dssp             EECSGGGCEEEEEET-TSEEEEEECCT
T ss_pred             EECCCCCCEEEEEec-CCcEEEEEEcC
Confidence            222  5677777765 44566666544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=95.82  E-value=1.5  Score=42.47  Aligned_cols=192  Identities=11%  Similarity=-0.064  Sum_probs=96.1

Q ss_pred             CeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC
Q 040145          105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN  184 (402)
Q Consensus       105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~  184 (402)
                      +.+|+..    .....+.++|+.+++-...-+..  .    ..++.+....+..+|+.+.        .+.+.+||+.+.
T Consensus       167 ~~~~V~~----~~~~~V~viD~~t~~v~~~i~~g--~----~p~~v~~SpDGr~lyv~~~--------dg~V~viD~~~~  228 (567)
T 1qks_A          167 NLFSVTL----RDAGQIALIDGSTYEIKTVLDTG--Y----AVHISRLSASGRYLFVIGR--------DGKVNMIDLWMK  228 (567)
T ss_dssp             GEEEEEE----TTTTEEEEEETTTCCEEEEEECS--S----CEEEEEECTTSCEEEEEET--------TSEEEEEETTSS
T ss_pred             ceEEEEe----CCCCeEEEEECCCCeEEEEEeCC--C----CccceEECCCCCEEEEEcC--------CCeEEEEECCCC
Confidence            4566654    23446889999987654321122  1    1134443333456777542        237999999622


Q ss_pred             ceeecCCCcccccceEEEEE-----CC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEE-cC--CCC--------CCCcce
Q 040145          185 RWTVMNKMITARSFFASGVI-----GG-MIYVAGGSSADLFELDSAEVLDPVKGNWRT-IA--SMG--------TNMASY  247 (402)
Q Consensus       185 ~W~~~~~~~~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~--~~~--------~~~~~~  247 (402)
                      +-+.+..++.......+++.     ++ .+|+..-.      ...+.++|..|.+=.. ++  .++        .+|...
T Consensus       229 t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~  302 (567)
T 1qks_A          229 EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  302 (567)
T ss_dssp             SCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             CCcEeEEEecCCCCceeEEccccCCCCCEEEEEEcc------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence            22333333333333344444     44 56666543      4678899987765322 11  111        112111


Q ss_pred             eEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE--EEECCEEEEEeccCCcEEEEEeCCCCce
Q 040145          248 DAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS--VVVYEHLFVVSELERMKLKVYDPSTDSW  325 (402)
Q Consensus       248 ~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~--~~~~~~l~~~gg~~~~~~~~yd~~~~~W  325 (402)
                      ..+..++..+++.-.     ....+...|..+.....+.. .+...+-..  ..-+++.++++....+.+.++|.++++-
T Consensus       303 i~~s~~~~~~vv~~~-----~~g~v~~vd~~~~~~~~v~~-i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl  376 (567)
T 1qks_A          303 ILASHYRPEFIVNVK-----ETGKILLVDYTDLNNLKTTE-ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL  376 (567)
T ss_dssp             EEECSSSSEEEEEET-----TTTEEEEEETTCSSEEEEEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEEcCCCCEEEEEec-----CCCeEEEEecCCCccceeee-eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence            111223333333211     12367888887665444332 222222222  2335665555555578999999998864


Q ss_pred             e
Q 040145          326 E  326 (402)
Q Consensus       326 ~  326 (402)
                      .
T Consensus       377 ~  377 (567)
T 1qks_A          377 V  377 (567)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=95.81  E-value=1.7  Score=43.16  Aligned_cols=248  Identities=13%  Similarity=0.081  Sum_probs=120.1

Q ss_pred             CCeEEEEEEeC-CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCC-----CCCCCceEE
Q 040145          104 DPWLFVFAFHK-CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD-----VDCPLDLVL  177 (402)
Q Consensus       104 ~~~l~~~gg~~-~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~-----~~~~~~~~~  177 (402)
                      ++..+++..+. +.....++++|..+++..... ++  .    ..+...+...+..||........     .......++
T Consensus       139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~--~----~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~  211 (693)
T 3iuj_A          139 DGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LK--D----VKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVY  211 (693)
T ss_dssp             TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EE--E----EESCCCEEETTTEEEEEESSCCC-------CCCCEEE
T ss_pred             CCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cC--C----ceeccEEEeCCCEEEEEEecCcccccccccCCCcEEE
Confidence            34444444332 334467889999998865431 11  0    10122223224455554332110     012345788


Q ss_pred             EEECCCCce--eecCCCcc--cccceEEEE-ECCE-EEEEcCCCCCCCCCCeeEEEcCCCC--cEEEcCCCCCCCcceeE
Q 040145          178 KYEMQKNRW--TVMNKMIT--ARSFFASGV-IGGM-IYVAGGSSADLFELDSAEVLDPVKG--NWRTIASMGTNMASYDA  249 (402)
Q Consensus       178 ~~d~~t~~W--~~~~~~~~--~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~~~~  249 (402)
                      +++..|..-  +.+-..+.  +.....+.. -+++ |++......  . .+.++++|..+.  .|+.+..-...... ..
T Consensus       212 ~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~-~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~  287 (693)
T 3iuj_A          212 FHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST--S-GNRLYVKDLSQENAPLLTVQGDLDADVS-LV  287 (693)
T ss_dssp             EEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS--S-CCEEEEEETTSTTCCCEEEECSSSSCEE-EE
T ss_pred             EEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC--C-CcEEEEEECCCCCCceEEEeCCCCceEE-EE
Confidence            888877643  12222221  222223332 2444 333322211  1 368899998765  67776432222111 12


Q ss_pred             EEECCEEEEEcccccCCccCCcEEEEeCCCC---CeeeccccccCCCceeEEEECCEEEEEeccC-CcEEEEEeCCCCce
Q 040145          250 AVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD---NWESMAVGLREGWTGSSVVVYEHLFVVSELE-RMKLKVYDPSTDSW  325 (402)
Q Consensus       250 ~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~yd~~~~~W  325 (402)
                      ...++.+|+....+..   ...++.+|+.+.   .|+.+.+..... . .....++.|++....+ ...++++|.+....
T Consensus       288 ~~~g~~l~~~t~~~~~---~~~l~~~d~~~~~~~~~~~l~~~~~~~-~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~  362 (693)
T 3iuj_A          288 DNKGSTLYLLTNRDAP---NRRLVTVDAANPGPAHWRDLIPERQQV-L-TVHSGSGYLFAEYMVDATARVEQFDYEGKRV  362 (693)
T ss_dssp             EEETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEEECCCSSC-E-EEEEETTEEEEEEEETTEEEEEEECTTSCEE
T ss_pred             eccCCEEEEEECCCCC---CCEEEEEeCCCCCccccEEEecCCCCE-E-EEEEECCEEEEEEEECCeeEEEEEECCCCee
Confidence            3347889888764322   247899998764   488765422222 2 2234466666554332 34789999987655


Q ss_pred             eecCCCCCCccccCCeEEE-E-eCCEEEEEecCceeeeEEEEecccccc
Q 040145          326 ETIEGPPLPEQICKPFAVN-A-CDCRVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       326 ~~~~~~~~p~~~~~~~~~~-~-~~~~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                      ..+.   +|.. .....+. . -++.|++..... ....+++.+|....
T Consensus       363 ~~l~---~p~~-~~~~~~~~~~d~~~l~~~~ss~-~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          363 REVA---LPGL-GSVSGFNGKHDDPALYFGFENY-AQPPTLYRFEPKSG  406 (693)
T ss_dssp             EEEC---CSSS-SEEEECCCCTTCSCEEEEEECS-SSCCEEEEECTTTC
T ss_pred             EEee---cCCC-ceEEeeecCCCCCEEEEEecCC-CCCCEEEEEECCCC
Confidence            5553   4321 1100111 1 134455443322 22356788876444

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.80  E-value=0.77  Score=48.92  Aligned_cols=206  Identities=11%  Similarity=0.018  Sum_probs=102.0

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF-  198 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~-  198 (402)
                      .+.+||..+.+-...  +....    ....++++..++..++.|+.+       ..+.+||..+++....  +...... 
T Consensus       638 ~i~vw~~~~~~~~~~--~~~h~----~~v~~~~~s~~~~~l~s~~~d-------~~v~vwd~~~~~~~~~--~~~~~~~v  702 (1249)
T 3sfz_A          638 TLQVFKAETGEKLLD--IKAHE----DEVLCCAFSSDDSYIATCSAD-------KKVKIWDSATGKLVHT--YDEHSEQV  702 (1249)
T ss_dssp             CEEEEETTTCCEEEE--ECCCS----SCEEEEEECTTSSEEEEEETT-------SEEEEEETTTCCEEEE--EECCSSCE
T ss_pred             eEEEEECCCCCEEEE--eccCC----CCEEEEEEecCCCEEEEEeCC-------CeEEEEECCCCceEEE--EcCCCCcE
Confidence            377888877653221  11111    223445554567777777652       2799999998764321  1111111 


Q ss_pred             eEEEEE---CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEE
Q 040145          199 FASGVI---GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQ  273 (402)
Q Consensus       199 ~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~  273 (402)
                      .++...   ++.+++.|+.      ...+.+||..++.-...  +.........+.+  ++.+++.|+.+      ..+.
T Consensus       703 ~~~~~~~~~~~~~l~sg~~------d~~v~vwd~~~~~~~~~--~~~h~~~v~~~~~sp~~~~l~s~s~d------g~v~  768 (1249)
T 3sfz_A          703 NCCHFTNKSNHLLLATGSN------DFFLKLWDLNQKECRNT--MFGHTNSVNHCRFSPDDELLASCSAD------GTLR  768 (1249)
T ss_dssp             EEEEECSSSSCCEEEEEET------TSCEEEEETTSSSEEEE--ECCCSSCEEEEEECSSTTEEEEEESS------SEEE
T ss_pred             EEEEEecCCCceEEEEEeC------CCeEEEEECCCcchhhe--ecCCCCCEEEEEEecCCCEEEEEECC------CeEE
Confidence            222222   3345556654      34588999988764322  1111112222222  56666766643      3678


Q ss_pred             EEeCCCCCeee-ccc--------cccC----CCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCC
Q 040145          274 VYDPSTDNWES-MAV--------GLRE----GWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKP  340 (402)
Q Consensus       274 ~yd~~~~~W~~-~~~--------~~~~----~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~  340 (402)
                      .||..+..-.. +..        ..+.    ........-++..+++++  ...+..||..+.......  .........
T Consensus       769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~~~~~~--~~~~~~~v~  844 (1249)
T 3sfz_A          769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSGLLAEI--HTGHHSTIQ  844 (1249)
T ss_dssp             EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCCEEEEE--ECSSSSCCC
T ss_pred             EEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc--CCcEEEEEecCCCceeEE--cCCCCCceE
Confidence            88887654221 110        0000    000011123566666655  358899999877654332  111111222


Q ss_pred             eEEEEeCCEEEEEecCce
Q 040145          341 FAVNACDCRVYVVGRNLH  358 (402)
Q Consensus       341 ~~~~~~~~~i~v~GG~~~  358 (402)
                      ......++.++++|+.+.
T Consensus       845 ~~~~sp~~~~l~~~~~dg  862 (1249)
T 3sfz_A          845 YCDFSPYDHLAVIALSQY  862 (1249)
T ss_dssp             EEEECSSTTEEEEECSSS
T ss_pred             EEEEcCCCCEEEEEeCCC
Confidence            333445677777777544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=95.79  E-value=0.34  Score=43.16  Aligned_cols=104  Identities=6%  Similarity=0.004  Sum_probs=58.4

Q ss_pred             CEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc-cccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT-ARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      +.+++.|+.+       ..+.+||..+++-..  .+.. ...-.++...  ++.+++.|+.      ...+.+||..++.
T Consensus        85 ~~~l~~~~~d-------g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~  149 (366)
T 3k26_A           85 HPLLAVAGSR-------GIIRIINPITMQCIK--HYVGHGNAINELKFHPRDPNLLLSVSK------DHALRLWNIQTDT  149 (366)
T ss_dssp             CEEEEEEETT-------CEEEEECTTTCCEEE--EEESCCSCEEEEEECSSCTTEEEEEET------TSCEEEEETTTTE
T ss_pred             CCEEEEecCC-------CEEEEEEchhceEee--eecCCCCcEEEEEECCCCCCEEEEEeC------CCeEEEEEeecCe
Confidence            5778887752       279999998765322  1111 1111223332  4567777765      3468899998876


Q ss_pred             EEEc-CCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCC
Q 040145          234 WRTI-ASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDN  281 (402)
Q Consensus       234 W~~~-~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~  281 (402)
                      -... ..+.........+.+  ++..++.|+.+      ..+.+||+.+.+
T Consensus       150 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~  194 (366)
T 3k26_A          150 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD------HSLKLWRINSKR  194 (366)
T ss_dssp             EEEEECSTTSCSSCEEEEEECTTSSEEEEEETT------SCEEEEESCSHH
T ss_pred             EEEEecccccccCceeEEEECCCCCEEEEecCC------CCEEEEECCCCc
Confidence            4332 222222223333333  56666766653      368899987653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=95.75  E-value=0.99  Score=40.01  Aligned_cols=203  Identities=9%  Similarity=-0.005  Sum_probs=99.3

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEE--ccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSI--PREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS  197 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~  197 (402)
                      .+.+||..+.+...+....       ....++..  ..++.+++.|+.+       ..+.+||..+++-..  .+.....
T Consensus       109 ~v~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~--~~~~~~~  172 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQIAQHD-------APVKTIHWIKAPNYSCVMTGSWD-------KTLKFWDTRSSNPMM--VLQLPER  172 (368)
T ss_dssp             EEEEEETTTTEEEEEEECS-------SCEEEEEEEECSSCEEEEEEETT-------SEEEEECSSCSSCSE--EEECSSC
T ss_pred             cEEEEEcCCCCceeecccc-------CceEEEEEEeCCCCCEEEEccCC-------CcEEEEECCCCcEEE--EEecCCC
Confidence            4778888887755432211       22233333  3467778887752       279999988765221  1122222


Q ss_pred             ceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCCcceeEEEECC----EEEEEcccccCCccCCc
Q 040145          198 FFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNMASYDAAVLDG----KLLVTEGWLWPFFVSPR  271 (402)
Q Consensus       198 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~g----~ly~~gG~~~~~~~~~~  271 (402)
                      ..........+++.++       ...+.+||..+..  +..+...............+.    ..++.|+.+      ..
T Consensus       173 ~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------g~  239 (368)
T 3mmy_A          173 CYCADVIYPMAVVATA-------ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE------GR  239 (368)
T ss_dssp             EEEEEEETTEEEEEEG-------GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT------SE
T ss_pred             ceEEEecCCeeEEEeC-------CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC------Cc
Confidence            3344445565555443       3557888887653  333332222222222222222    225555543      36


Q ss_pred             EEEEeCCCCCe-eeccccccCCC-------------ceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCc
Q 040145          272 GQVYDPSTDNW-ESMAVGLREGW-------------TGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPE  335 (402)
Q Consensus       272 ~~~yd~~~~~W-~~~~~~~~~~~-------------~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~  335 (402)
                      +.+||..+..- ..+.. .....             .-..+.+  ++++++.|+. ...+.+||..+.+-...-  ... 
T Consensus       240 i~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~--~~~-  314 (368)
T 3mmy_A          240 VAIHYINPPNPAKDNFT-FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-DGRFSFWDKDARTKLKTS--EQL-  314 (368)
T ss_dssp             EEEEESSCSCHHHHSEE-EECSEEC----CCCEEECCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEEC--CCC-
T ss_pred             EEEEecCCCCcccccee-eeeeecccccccccccccceEEEEEecCCCEEEEEcc-CCeEEEEECCCCcEEEEe--cCC-
Confidence            78888876532 11110 00000             0111223  5666667665 457999999876433221  111 


Q ss_pred             cccCCeEEE-EeCCEEEEEecCc
Q 040145          336 QICKPFAVN-ACDCRVYVVGRNL  357 (402)
Q Consensus       336 ~~~~~~~~~-~~~~~i~v~GG~~  357 (402)
                      . ..-.+++ ..+++.++.|+.+
T Consensus       315 ~-~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          315 D-QPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             S-SCEEEEEECTTSSCEEEEECC
T ss_pred             C-CCceEEEECCCCCeEEEEecc
Confidence            1 1112333 3467777777643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.74  E-value=0.95  Score=39.74  Aligned_cols=181  Identities=9%  Similarity=0.041  Sum_probs=84.6

Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE---CCEEEEEcCCCCCCCCCCeeEEEcCCC
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI---GGMIYVAGGSSADLFELDSAEVLDPVK  231 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t  231 (402)
                      ..+..++.|+.+       ..+.+||.....-..................   .+.+++.|+.      ...+.+||..+
T Consensus       138 ~~~~~l~s~s~d-------~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~------d~~i~i~d~~~  204 (340)
T 4aow_A          138 SDNRQIVSGSRD-------KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW------DKLVKVWNLAN  204 (340)
T ss_dssp             TTSSCEEEEETT-------SCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEET------TSCEEEEETTT
T ss_pred             ecCccceeecCC-------CeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcC------CCEEEEEECCC
Confidence            355666666652       2577788765432222111111111122221   2345566654      34578899988


Q ss_pred             CcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEec
Q 040145          232 GNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSE  309 (402)
Q Consensus       232 ~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg  309 (402)
                      ..-...  +........++.+  ++++++.|+.+      ..+..||+.+.+-  +............+...+..++.++
T Consensus       205 ~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D------g~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~  274 (340)
T 4aow_A          205 CKLKTN--HIGHTGYLNTVTVSPDGSLCASGGKD------GQAMLWDLNEGKH--LYTLDGGDIINALCFSPNRYWLCAA  274 (340)
T ss_dssp             TEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------CEEEEEETTTTEE--EEEEECSSCEEEEEECSSSSEEEEE
T ss_pred             CceeeE--ecCCCCcEEEEEECCCCCEEEEEeCC------CeEEEEEeccCce--eeeecCCceEEeeecCCCCceeecc
Confidence            764332  1111112222323  67777777753      3688899876532  2211111111112233344445555


Q ss_pred             cCCcEEEEEeCCCCceee-cCCCCCCc----cccCCeEEE-EeCCEEEEEecCcee
Q 040145          310 LERMKLKVYDPSTDSWET-IEGPPLPE----QICKPFAVN-ACDCRVYVVGRNLHV  359 (402)
Q Consensus       310 ~~~~~~~~yd~~~~~W~~-~~~~~~p~----~~~~~~~~~-~~~~~i~v~GG~~~~  359 (402)
                      . ...+.+||..+..-.. +.......    ....-.+++ ..+++.++.||.++.
T Consensus       275 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~  329 (340)
T 4aow_A          275 T-GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL  329 (340)
T ss_dssp             E-TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC
T ss_pred             C-CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            4 4578899988764322 22101100    001111222 346788888886654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.71  E-value=0.46  Score=47.40  Aligned_cols=212  Identities=11%  Similarity=0.089  Sum_probs=109.6

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC----ceee-cC-CCc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN----RWTV-MN-KMI  193 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~----~W~~-~~-~~~  193 (402)
                      .+..+++.......+.....      ...+.+....++.||+.--.       ...|+++++.+.    .-.. +. .+.
T Consensus       387 ~I~~id~~~~~~~~~~~~~~------~p~gla~d~~~~~Ly~sD~~-------~~~I~~~~~~g~~~~~~~~~~i~~~~~  453 (699)
T 1n7d_A          387 EVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLS-------QRMICSTQLDRAHGVSSYDTVISRDIQ  453 (699)
T ss_dssp             C-CEECTTSCCEECCSCCCT------TCCCCEEETTTTEEEECCTT-------TTSBEEEESCCCCC-CCCCCBCCSCC-
T ss_pred             ceEEEeCCCCcceeeeccCc------ceEEEccccccCeEEEEecC-------CCeEEEEecCCCCCCcceEEEEeCCCC
Confidence            35566776666654432221      12333433346788886432       347888988751    1111 11 111


Q ss_pred             ccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCC--CCCCCcceeEEE--ECCEEEEEcccccCCc
Q 040145          194 TARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS--MGTNMASYDAAV--LDGKLLVTEGWLWPFF  267 (402)
Q Consensus       194 ~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~--~~~~~~~~~~~~--~~g~ly~~gG~~~~~~  267 (402)
                      .   ..++++  .+++||+.-..      ...++++|+....-+.+..  +..++   ..++  .++.||+.....    
T Consensus       454 ~---P~glavD~~~g~LY~tD~~------~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~~----  517 (699)
T 1n7d_A          454 A---PDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWGT----  517 (699)
T ss_dssp             ----CCCEECCCSSSBCEECCTT------TSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCSS----
T ss_pred             C---cceEEEEeeCCcEEEEecc------CCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccCC----
Confidence            1   122333  46788987432      4568999988765444422  22221   2222  257888764211    


Q ss_pred             cCCcEEEEeCCCCCeeeccccccCCCceeEEE--ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE
Q 040145          268 VSPRGQVYDPSTDNWESMAVGLREGWTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA  345 (402)
Q Consensus       268 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~  345 (402)
                       ...|+++++....-..+.. ....+....++  .+++||+.-.. ...|+++|+....-..+..  .+.......++++
T Consensus       518 -~~~I~~~~~dG~~~~~l~~-~~l~~PnGlavd~~~~~LY~aD~~-~~~I~~~d~dG~~~~~~~~--~~~~~~~P~glav  592 (699)
T 1n7d_A          518 -PAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILE--DEKRLAHPFSLAV  592 (699)
T ss_dssp             -SCCEEBCCSSSCCCCEESC-SSCSSCCCEEECTTTCCEEEEETT-TTEEEEECSSSSCCEEECC--CSSSCSSCCCCEE
T ss_pred             -CCeEEEEeCCCCCeeEEEe-CCCCCccEEEEeccCCEEEEEecC-CCeEEEEccCCCceEEEEe--cCCcCCCceEeEE
Confidence             1468888876443332221 01111111222  25889988643 6789999997644444431  1122234567777


Q ss_pred             eCCEEEEEecCceeeeEEEEeccc
Q 040145          346 CDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       346 ~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      .++.||+.-...+.    |..+++
T Consensus       593 d~~~lywtd~~~~~----V~~~d~  612 (699)
T 1n7d_A          593 FEDKVFWTDIINEA----IFSANR  612 (699)
T ss_dssp             ETTEEEEECSTTTC----EEEEET
T ss_pred             ECCEEEEEeCCCCe----EEEEEc
Confidence            88899998754333    555554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.70  E-value=0.62  Score=41.27  Aligned_cols=190  Identities=11%  Similarity=0.066  Sum_probs=94.0

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccC---CEEEEEeCccCCCCCCCceEEEEE
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPRE---GTLFVCGGMVSDVDCPLDLVLKYE  180 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~---~~i~v~GG~~~~~~~~~~~~~~~d  180 (402)
                      +..+++.++.. .....+.+||..+.+..........     ....++.+..+   +.+++.|+.+       ..+.+||
T Consensus        30 ~~~l~~~~s~~-~~d~~v~iw~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~l~~~~~d-------g~i~iwd   96 (357)
T 3i2n_A           30 SAKFVTMGNFA-RGTGVIQLYEIQHGDLKLLREIEKA-----KPIKCGTFGATSLQQRYLATGDFG-------GNLHIWN   96 (357)
T ss_dssp             SSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEEES-----SCEEEEECTTCCTTTCCEEEEETT-------SCEEEEC
T ss_pred             CceEEEecCcc-CCCcEEEEEeCCCCcccceeeeccc-----CcEEEEEEcCCCCCCceEEEecCC-------CeEEEEe
Confidence            33555555321 1234578888887765433222210     12233444333   4777777652       2688999


Q ss_pred             CCCCc--eeecCCCcccccceEEEE-------ECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCC-Cccee
Q 040145          181 MQKNR--WTVMNKMITARSFFASGV-------IGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTN-MASYD  248 (402)
Q Consensus       181 ~~t~~--W~~~~~~~~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~-~~~~~  248 (402)
                      ..++.  -..+....  ..-..+..       -++..++.|+.      ...+.+||..+..  ...+...... .....
T Consensus        97 ~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~s~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  168 (357)
T 3i2n_A           97 LEAPEMPVYSVKGHK--EIINAIDGIGGLGIGEGAPEIVTGSR------DGTVKVWDPRQKDDPVANMEPVQGENKRDCW  168 (357)
T ss_dssp             TTSCSSCSEEECCCS--SCEEEEEEESGGGCC-CCCEEEEEET------TSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred             CCCCCccEEEEEecc--cceEEEeeccccccCCCccEEEEEeC------CCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence            88765  11221111  11111211       24556666665      3468899988764  3333322221 11122


Q ss_pred             EEE------ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE----CCEEEEEeccCCcEEEEE
Q 040145          249 AAV------LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV----YEHLFVVSELERMKLKVY  318 (402)
Q Consensus       249 ~~~------~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~----~~~l~~~gg~~~~~~~~y  318 (402)
                      .+.      -++.+++.|+.+      ..+..||+.+.+-..... ... .....+..    ++..+++|+. ...+.+|
T Consensus       169 ~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~-~~~-~v~~~~~~~~~~~~~~l~~~~~-dg~i~i~  239 (357)
T 3i2n_A          169 TVAFGNAYNQEERVVCAGYDN------GDIKLFDLRNMALRWETN-IKN-GVCSLEFDRKDISMNKLVATSL-EGKFHVF  239 (357)
T ss_dssp             EEEEECCCC-CCCEEEEEETT------SEEEEEETTTTEEEEEEE-CSS-CEEEEEESCSSSSCCEEEEEES-TTEEEEE
T ss_pred             EEEEEeccCCCCCEEEEEccC------CeEEEEECccCceeeecC-CCC-ceEEEEcCCCCCCCCEEEEECC-CCeEEEE
Confidence            222      367777777643      378999998765322211 111 11112222    5666666665 5578888


Q ss_pred             eCCCC
Q 040145          319 DPSTD  323 (402)
Q Consensus       319 d~~~~  323 (402)
                      |..+.
T Consensus       240 d~~~~  244 (357)
T 3i2n_A          240 DMRTQ  244 (357)
T ss_dssp             EEEEE
T ss_pred             eCcCC
Confidence            87653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.64  E-value=0.29  Score=43.27  Aligned_cols=116  Identities=10%  Similarity=0.111  Sum_probs=63.6

Q ss_pred             EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc-ceEEEEE---CCEEEEEcCCCCCCCCCCeeE
Q 040145          150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS-FFASGVI---GGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~-~~~~~~~---~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ++.+..++..++.|+.+       ..+.+||..++....+..+..... -.+++..   ++.+++.|+.      -..+.
T Consensus        18 ~v~~s~~g~~lasgs~D-------~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~------D~~v~   84 (316)
T 3bg1_A           18 DAQMDYYGTRLATCSSD-------RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY------DRKVI   84 (316)
T ss_dssp             EEEECGGGCEEEEEETT-------TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET------TSCEE
T ss_pred             EeeEcCCCCEEEEEeCC-------CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC------CCEEE
Confidence            34443467777777752       278889988765433322221111 1223332   2566777765      34688


Q ss_pred             EEcCCCCcEEEcCCCCCCCcceeEEEE--C--CEEEEEcccccCCccCCcEEEEeCCCC-Ceee
Q 040145          226 VLDPVKGNWRTIASMGTNMASYDAAVL--D--GKLLVTEGWLWPFFVSPRGQVYDPSTD-NWES  284 (402)
Q Consensus       226 ~yd~~t~~W~~~~~~~~~~~~~~~~~~--~--g~ly~~gG~~~~~~~~~~~~~yd~~~~-~W~~  284 (402)
                      +||..++.|..+..+.........+.+  +  +.+++.|+.+      ..+..||..+. .|..
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D------~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD------GAISLLTYTGEGQWEV  142 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS------SCEEEEEECSSSCEEE
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC------CCEEEEecCCCCCcce
Confidence            999988776544333222222223333  2  5667777653      36778887765 5643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.64  E-value=1.8  Score=42.16  Aligned_cols=115  Identities=15%  Similarity=0.176  Sum_probs=67.9

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEEC-CCCc--eeecCCCccc-----c---cceEEEE--ECCE----EEEEcCCCCCC
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEM-QKNR--WTVMNKMITA-----R---SFFASGV--IGGM----IYVAGGSSADL  218 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~-~t~~--W~~~~~~~~~-----r---~~~~~~~--~~~~----iyv~GG~~~~~  218 (402)
                      ++.||+.+..       ...++.+|. .|++  |+.-......     .   ...+.++  .+++    ||+...     
T Consensus        62 ~g~vyv~~~~-------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-----  129 (599)
T 1w6s_A           62 DGKMYIHTSF-------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-----  129 (599)
T ss_dssp             TTEEEEECST-------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-----
T ss_pred             CCEEEEEeCC-------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-----
Confidence            8999998652       236999999 8885  8875433211     1   1123444  5666    887643     


Q ss_pred             CCCCeeEEEcCCCCc--EEEcCCCCCC--CcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eeec
Q 040145          219 FELDSAEVLDPVKGN--WRTIASMGTN--MASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESM  285 (402)
Q Consensus       219 ~~~~~~~~yd~~t~~--W~~~~~~~~~--~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~  285 (402)
                        ...+..+|..|++  |+.-..-...  .....-++.+++||+-.+..+ ......+..||.++++  |+.-
T Consensus       130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e-~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          130 --DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAE-LGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             --TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGG-GTCCCEEEEEETTTCCEEEEEE
T ss_pred             --CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccc-cCCCCeEEEEECCCCcEEEEEc
Confidence              3568999998876  8753211111  111233456888887443111 1112478999998875  8653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.60  E-value=1.2  Score=40.01  Aligned_cols=211  Identities=12%  Similarity=0.086  Sum_probs=117.7

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF  199 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  199 (402)
                      .+..+++.......+..-.      ....+.+.-..++.||+..-.       ...++++++.....+.+..... ....
T Consensus        54 ~I~~i~~~g~~~~~~~~~~------~~~~~l~~d~~~~~ly~~D~~-------~~~I~r~~~~g~~~~~~~~~~~-~~p~  119 (349)
T 3v64_C           54 DIRQVLPHRSEYTLLLNNL------ENAIALDFHHRRELVFWSDVT-------LDRILRANLNGSNVEEVVSTGL-ESPG  119 (349)
T ss_dssp             CEEEECTTSCCEEEEECSC------SCEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEECSSC-SCCC
T ss_pred             ceEEEeCCCCeeEEeecCC------CceEEEEEeccccEEEEEecc-------CCceEEEecCCCCceEEEeCCC-CCcc
Confidence            3677788776665543211      022333333347899987532       3479999998776444321111 1113


Q ss_pred             EEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC--CCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEE
Q 040145          200 ASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA--SMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQ  273 (402)
Q Consensus       200 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~  273 (402)
                      ++++  .++.||+.-..      ...++++++....-+.+.  .+..|   ...++-  ++.||+.....     ...++
T Consensus       120 glavd~~~g~ly~~d~~------~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~-----~~~I~  185 (349)
T 3v64_C          120 GLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN-----TPRIE  185 (349)
T ss_dssp             EEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS-----SCEEE
T ss_pred             EEEEecCCCeEEEEcCC------CCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC-----CCEEE
Confidence            4444  47899998653      467888988765433332  22222   123333  68899875321     24799


Q ss_pred             EEeCCCCCeeeccccccCCCceeEEE--ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEE
Q 040145          274 VYDPSTDNWESMAVGLREGWTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVY  351 (402)
Q Consensus       274 ~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~  351 (402)
                      ++++....-..+.. ....+....+.  .+++||+.... ...|+++|++...-..+....+    ....++++.++.||
T Consensus       186 r~~~dG~~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~-~~~I~~~~~dG~~~~~~~~~~~----~~P~giav~~~~ly  259 (349)
T 3v64_C          186 ASSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAK-HHVIERANLDGSHRKAVISQGL----PHPFAITVFEDSLY  259 (349)
T ss_dssp             EEETTSCSCEESCC-SSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEECSSC----SSEEEEEEETTEEE
T ss_pred             EEeCCCCCcEEEEE-CCCCCcceEEEeCCCCEEEEEECC-CCEEEEEeCCCCceEEEEeCCC----CCceEEEEECCEEE
Confidence            99987644333321 11111112222  37899988543 5689999987643333321122    34567777899999


Q ss_pred             EEecCceeeeEEEEecc
Q 040145          352 VVGRNLHVAVGHITRLS  368 (402)
Q Consensus       352 v~GG~~~~~~~~v~~~~  368 (402)
                      +.--..+.    |..++
T Consensus       260 ~td~~~~~----V~~~~  272 (349)
T 3v64_C          260 WTDWHTKS----INSAN  272 (349)
T ss_dssp             EEETTTTE----EEEEE
T ss_pred             EecCCCCe----EEEEE
Confidence            98754433    45554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.52  E-value=0.78  Score=41.43  Aligned_cols=198  Identities=10%  Similarity=-0.048  Sum_probs=98.5

Q ss_pred             CceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc-CCE-EEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc
Q 040145          117 GKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR-EGT-LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT  194 (402)
Q Consensus       117 ~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~-~~~-i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~  194 (402)
                      ....++.+|..+.+...+....       .......... ++. |++... . ........++++|..++.++.+.. ..
T Consensus       166 ~~~~l~~~d~~~g~~~~~~~~~-------~~~~~~~~sp~dg~~l~~~~~-~-~~~~~~~~l~~~d~~~~~~~~l~~-~~  235 (396)
T 3c5m_A          166 PTCRLIKVDIETGELEVIHQDT-------AWLGHPIYRPFDDSTVGFCHE-G-PHDLVDARMWLVNEDGSNVRKIKE-HA  235 (396)
T ss_dssp             CCEEEEEEETTTCCEEEEEEES-------SCEEEEEEETTEEEEEEEEEC-S-CSSSCSCCCEEEETTSCCCEESSC-CC
T ss_pred             CcceEEEEECCCCcEEeeccCC-------cccccceECCCCCCEEEEEec-C-CCCCCCceEEEEECCCCceeEeec-cC
Confidence            3446788898887766554211       2223333333 344 444432 1 111123579999998887777654 11


Q ss_pred             cc-cceEEEEE-CCE-EEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEcccccC-----
Q 040145          195 AR-SFFASGVI-GGM-IYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTEGWLWP-----  265 (402)
Q Consensus       195 ~r-~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~~~~-----  265 (402)
                      +. ........ +++ |++.+...+ .. ...++++|..++..+.+...+..  . ....- +|+++++.+...+     
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~-~~-~~~l~~~d~~~g~~~~l~~~~~~--~-~~~s~~dg~~l~~~~~~~p~~~~~  310 (396)
T 3c5m_A          236 EGESCTHEFWIPDGSAMAYVSYFKG-QT-DRVIYKANPETLENEEVMVMPPC--S-HLMSNFDGSLMVGDGCDAPVDVAD  310 (396)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETT-TC-CEEEEEECTTTCCEEEEEECCSE--E-EEEECSSSSEEEEEECCC------
T ss_pred             CCccccceEECCCCCEEEEEecCCC-Cc-cceEEEEECCCCCeEEeeeCCCC--C-CCccCCCCceEEEecCCcceeecc
Confidence            11 11122222 444 444432111 11 24499999998887766544421  1 22333 7777666442110     


Q ss_pred             -----CccCCcEEEEeCCCCCeeeccccccC----------CCceeEEEECCEEEEEecc--CCcEEEEEeCCCCceeec
Q 040145          266 -----FFVSPRGQVYDPSTDNWESMAVGLRE----------GWTGSSVVVYEHLFVVSEL--ERMKLKVYDPSTDSWETI  328 (402)
Q Consensus       266 -----~~~~~~~~~yd~~~~~W~~~~~~~~~----------~~~~~~~~~~~~l~~~gg~--~~~~~~~yd~~~~~W~~~  328 (402)
                           ......++.+|+.+++...+......          ........-+|+.+++...  ....++.+|..+..++.+
T Consensus       311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~  390 (396)
T 3c5m_A          311 ADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLE  390 (396)
T ss_dssp             ----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred             ccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccc
Confidence                 01124789999988876655431110          0111122235543334332  245788999888777665


Q ss_pred             C
Q 040145          329 E  329 (402)
Q Consensus       329 ~  329 (402)
                      .
T Consensus       391 ~  391 (396)
T 3c5m_A          391 H  391 (396)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=95.49  E-value=1.1  Score=38.72  Aligned_cols=173  Identities=13%  Similarity=0.066  Sum_probs=80.2

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc-eeecCCCcccccc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR-WTVMNKMITARSF  198 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~-W~~~~~~~~~r~~  198 (402)
                      .+.+||..+..-...-...  .    ....++....++.+++.|+.+       ..+.+||..... .+.+..+......
T Consensus        40 ~v~vw~~~~~~~~~~~~~~--~----~~v~~~~~~~~~~~l~~~~~d-------g~i~~~~~~~~~~~~~~~~~~~~~~~  106 (313)
T 3odt_A           40 TVRLWSKDDQWLGTVVYTG--Q----GFLNSVCYDSEKELLLFGGKD-------TMINGVPLFATSGEDPLYTLIGHQGN  106 (313)
T ss_dssp             EEEEEEESSSEEEEEEEEC--S----SCEEEEEEETTTTEEEEEETT-------SCEEEEETTCCTTSCC-CEECCCSSC
T ss_pred             cEEEEECCCCEEEEEeecC--C----ccEEEEEECCCCCEEEEecCC-------CeEEEEEeeecCCCCcccchhhcccC
Confidence            3677887665533221111  0    223344444567777777653       257777765532 2222222212222


Q ss_pred             eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE-EE-CCEEEEEcccccCCccCCcEEEEe
Q 040145          199 FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA-VL-DGKLLVTEGWLWPFFVSPRGQVYD  276 (402)
Q Consensus       199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~-~~-~g~ly~~gG~~~~~~~~~~~~~yd  276 (402)
                      ......++..++.|+.      ...+.+||........ .....+  ..... .- ++..++.++.+      ..+..||
T Consensus       107 i~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~-~~~~~~--v~~~~~~~~~~~~l~~~~~d------~~i~i~d  171 (313)
T 3odt_A          107 VCSLSFQDGVVISGSW------DKTAKVWKEGSLVYNL-QAHNAS--VWDAKVVSFSENKFLTASAD------KTIKLWQ  171 (313)
T ss_dssp             EEEEEEETTEEEEEET------TSEEEEEETTEEEEEE-ECCSSC--EEEEEEEETTTTEEEEEETT------SCEEEEE
T ss_pred             EEEEEecCCEEEEEeC------CCCEEEEcCCcEEEec-ccCCCc--eeEEEEccCCCCEEEEEECC------CCEEEEe
Confidence            2222335555666665      4567888832222211 111111  11122 22 56666666643      3678888


Q ss_pred             CCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          277 PSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       277 ~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      ..+..- .+.. ......... ..-++. ++.|+. ...+.+||..+.+
T Consensus       172 ~~~~~~-~~~~-~~~~~i~~~~~~~~~~-~~~~~~-dg~i~i~d~~~~~  216 (313)
T 3odt_A          172 NDKVIK-TFSG-IHNDVVRHLAVVDDGH-FISCSN-DGLIKLVDMHTGD  216 (313)
T ss_dssp             TTEEEE-EECS-SCSSCEEEEEEEETTE-EEEEET-TSEEEEEETTTCC
T ss_pred             cCceEE-EEec-cCcccEEEEEEcCCCe-EEEccC-CCeEEEEECCchh
Confidence            332211 1111 111111222 334677 555554 5689999998754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=95.48  E-value=1.4  Score=43.98  Aligned_cols=138  Identities=9%  Similarity=-0.068  Sum_probs=67.9

Q ss_pred             eeEEEcCCC-CcEEEcCCCCCCCc--ceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCC----ce
Q 040145          223 SAEVLDPVK-GNWRTIASMGTNMA--SYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGW----TG  295 (402)
Q Consensus       223 ~~~~yd~~t-~~W~~~~~~~~~~~--~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~----~~  295 (402)
                      .++++|..+ +.-..+........  ..... -+|+..++...+.. .....++.+|+.+++...+.......+    ..
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~-~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~  341 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD-QKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS  341 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETT-SSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEeccc-CCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence            788889888 76554432211111  11223 45554443332111 112478999999888766543222211    12


Q ss_pred             eEEEECCEEEEEeccC-CcEEEEEeCCCCceeecCCCCCCccccCCeEE--EEeCC-EEEEEecCceeeeEEEEecc
Q 040145          296 SSVVVYEHLFVVSELE-RMKLKVYDPSTDSWETIEGPPLPEQICKPFAV--NACDC-RVYVVGRNLHVAVGHITRLS  368 (402)
Q Consensus       296 ~~~~~~~~l~~~gg~~-~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~--~~~~~-~i~v~GG~~~~~~~~v~~~~  368 (402)
                      ....-+|++++.++.+ ...++.+|.... ...+..  -.   .....+  ...++ .|++.+.........+|..+
T Consensus       342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~--~~---~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          342 LRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH--GN---WSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             CEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC--SS---SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             eEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee--cc---eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            2223367766665544 357899987666 555542  11   111122  23344 56666654432234455554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=95.48  E-value=1.2  Score=38.99  Aligned_cols=197  Identities=11%  Similarity=-0.001  Sum_probs=97.9

Q ss_pred             CeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC
Q 040145          105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN  184 (402)
Q Consensus       105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~  184 (402)
                      ..||+.+.    ....++.|++. .+...+....       ......+...++.+|+....       ...+.+||+. +
T Consensus        57 ~~l~~~d~----~~~~i~~~~~~-g~~~~~~~~~-------~~~~gl~~d~dG~l~v~~~~-------~~~v~~~~~~-g  116 (305)
T 3dr2_A           57 RTLVWSDL----VGRRVLGWRED-GTVDVLLDAT-------AFTNGNAVDAQQRLVHCEHG-------RRAITRSDAD-G  116 (305)
T ss_dssp             TEEEEEET----TTTEEEEEETT-SCEEEEEESC-------SCEEEEEECTTSCEEEEETT-------TTEEEEECTT-S
T ss_pred             CEEEEEEC----CCCEEEEEeCC-CCEEEEeCCC-------CccceeeECCCCCEEEEECC-------CCEEEEECCC-C
Confidence            44666542    22347778874 4443332111       11233344456788876432       2368899986 6


Q ss_pred             ceeecCCCccc----ccceEEEEECCEEEEE----cCCCC-------CCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE
Q 040145          185 RWTVMNKMITA----RSFFASGVIGGMIYVA----GGSSA-------DLFELDSAEVLDPVKGNWRTIASMGTNMASYDA  249 (402)
Q Consensus       185 ~W~~~~~~~~~----r~~~~~~~~~~~iyv~----GG~~~-------~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~  249 (402)
                      +.+.+......    +....+..-++.||+.    |....       .......+++||+.+++.+.+..    ......
T Consensus       117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~----~~~p~g  192 (305)
T 3dr2_A          117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMAD----LDHPNG  192 (305)
T ss_dssp             CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEE----ESSEEE
T ss_pred             CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEec----CCCCcc
Confidence            66554321111    1111222236788885    32210       11113578999998888776541    112222


Q ss_pred             EEE--CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccc--cccCCC-ceeEEEECCEEEEEeccCCcEEEEEeCCCC
Q 040145          250 AVL--DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV--GLREGW-TGSSVVVYEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       250 ~~~--~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~-~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      ..+  +++ ||+....... ...+.+++||...+.......  ...... .+..+--+|+||+..+   ..+.+||++..
T Consensus       193 l~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~---~gv~~~~~~g~  268 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG---TGVCVFDSDGQ  268 (305)
T ss_dssp             EEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS---SEEEEECTTSC
T ss_pred             eEEcCCCCEEEEEecCCcC-CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC---CcEEEECCCCC
Confidence            222  454 7776442110 012478899987554221111  011111 1222334688887542   36999999776


Q ss_pred             ceeecC
Q 040145          324 SWETIE  329 (402)
Q Consensus       324 ~W~~~~  329 (402)
                      .-..+.
T Consensus       269 ~~~~~~  274 (305)
T 3dr2_A          269 LLGHIP  274 (305)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=95.47  E-value=0.23  Score=45.15  Aligned_cols=151  Identities=12%  Similarity=0.138  Sum_probs=76.7

Q ss_pred             eEEEEcc-CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC-----------c-ccccceEEEEE--CCEEEEEcC
Q 040145          149 RCVSIPR-EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM-----------I-TARSFFASGVI--GGMIYVAGG  213 (402)
Q Consensus       149 ~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~-----------~-~~r~~~~~~~~--~~~iyv~GG  213 (402)
                      .++.+.. ++.+++.|+.+       ..+.+||..++........           . ....-.++...  ++.+++.|+
T Consensus        47 ~~~~~s~~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  119 (408)
T 4a11_B           47 NTLDIEPVEGRYMLSGGSD-------GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS  119 (408)
T ss_dssp             EEEEECTTTCCEEEEEETT-------SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred             EEEEEecCCCCEEEEEcCC-------CeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence            3344433 56777777652       2688999887653221110           0 11111222332  445666666


Q ss_pred             CCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE----CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccc
Q 040145          214 SSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL----DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL  289 (402)
Q Consensus       214 ~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~----~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~  289 (402)
                      .      ...+.+||..+..-...-..+...  ......    ++.+++.|+.+      ..+..||+.+.+-...-...
T Consensus       120 ~------d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~~~~~~~~~  185 (408)
T 4a11_B          120 F------DKTLKVWDTNTLQTADVFNFEETV--YSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGSCSHILQGH  185 (408)
T ss_dssp             T------TSEEEEEETTTTEEEEEEECSSCE--EEEEECSSCSSCCEEEEEESS------SSEEEEESSSSCCCEEECCC
T ss_pred             C------CCeEEEeeCCCCccceeccCCCce--eeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcceeeeecCC
Confidence            5      456889999887654332222221  111111    34466666643      36899998876432211101


Q ss_pred             cCCCceeEEEE--CCE-EEEEeccCCcEEEEEeCCCC
Q 040145          290 REGWTGSSVVV--YEH-LFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       290 ~~~~~~~~~~~--~~~-l~~~gg~~~~~~~~yd~~~~  323 (402)
                       .. .-.++.+  ++. +++.|+. ...+.+||..+.
T Consensus       186 -~~-~v~~~~~~~~~~~ll~~~~~-dg~i~i~d~~~~  219 (408)
T 4a11_B          186 -RQ-EILAVSWSPRYDYILATASA-DSRVKLWDVRRA  219 (408)
T ss_dssp             -CS-CEEEEEECSSCTTEEEEEET-TSCEEEEETTCS
T ss_pred             -CC-cEEEEEECCCCCcEEEEEcC-CCcEEEEECCCC
Confidence             11 1112222  333 6767665 457889998754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.40  E-value=1.3  Score=38.90  Aligned_cols=153  Identities=12%  Similarity=0.125  Sum_probs=75.2

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEc
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLD  228 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd  228 (402)
                      .++.+..++.+++.|+.+       ..+.+++.........................+..++.|+.      -..+.+||
T Consensus        90 ~~~~~s~dg~~l~s~~~d-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~------d~~~~~~d  156 (340)
T 4aow_A           90 SDVVISSDGQFALSGSWD-------GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR------DKTIKLWN  156 (340)
T ss_dssp             EEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET------TSCEEEEC
T ss_pred             EEEEECCCCCEEEEEccc-------ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC------CCeEEEEE
Confidence            344454567777777763       26778888776544322211111111112223455556654      23467778


Q ss_pred             CCCCcEEEcCCCCCCCcceeEEEE----CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC
Q 040145          229 PVKGNWRTIASMGTNMASYDAAVL----DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE  302 (402)
Q Consensus       229 ~~t~~W~~~~~~~~~~~~~~~~~~----~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~  302 (402)
                      .....-..... .........+.+    .+.+++.++.+      ..+..||..+.+-...-.... ... .++.+  ++
T Consensus       157 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~s~~~d------~~i~i~d~~~~~~~~~~~~h~-~~v-~~~~~s~~~  227 (340)
T 4aow_A          157 TLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWD------KLVKVWNLANCKLKTNHIGHT-GYL-NTVTVSPDG  227 (340)
T ss_dssp             TTSCEEEEECS-SSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTTEEEEEECCCS-SCE-EEEEECTTS
T ss_pred             eCCCceEEEEe-ccccCcccceEEccCCCCcEEEEEcCC------CEEEEEECCCCceeeEecCCC-CcE-EEEEECCCC
Confidence            76543222211 111111122222    23455555542      368889988765432211111 111 12222  67


Q ss_pred             EEEEEeccCCcEEEEEeCCCCc
Q 040145          303 HLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       303 ~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      .+++.|+. ...+.+||..+..
T Consensus       228 ~~l~s~s~-Dg~i~iwd~~~~~  248 (340)
T 4aow_A          228 SLCASGGK-DGQAMLWDLNEGK  248 (340)
T ss_dssp             SEEEEEET-TCEEEEEETTTTE
T ss_pred             CEEEEEeC-CCeEEEEEeccCc
Confidence            77777776 4578899987654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=95.38  E-value=2.4  Score=41.95  Aligned_cols=152  Identities=13%  Similarity=0.144  Sum_probs=78.7

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcc-cccceEEEEE-CCEEEEEcCCCCCCCCCCeeEE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMIT-ARSFFASGVI-GGMIYVAGGSSADLFELDSAEV  226 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~  226 (402)
                      .++++..++.+++.|+.+       ..+.+||..++.-...  +.. ...-.+++.. ++..++.|+.      -..+.+
T Consensus       434 ~~v~~s~~g~~l~sgs~D-------g~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~------D~~i~i  498 (694)
T 3dm0_A          434 EDVVLSSDGQFALSGSWD-------GELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDNRQIVSASR------DRTIKL  498 (694)
T ss_dssp             EEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSSCEEEEET------TSCEEE
T ss_pred             EEEEECCCCCEEEEEeCC-------CcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCCCEEEEEeC------CCEEEE
Confidence            445555577788888763       2799999988753221  111 1111222222 4555666665      345778


Q ss_pred             EcCCCCcEEEcCC-CCCCCcceeEEEE--CC--EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-
Q 040145          227 LDPVKGNWRTIAS-MGTNMASYDAAVL--DG--KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-  300 (402)
Q Consensus       227 yd~~t~~W~~~~~-~~~~~~~~~~~~~--~g--~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-  300 (402)
                      ||.....-..+.. ....+....++.+  ++  .+++.|+.+      ..+.+||+.+.+-...-... .... .++.+ 
T Consensus       499 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~~h-~~~v-~~v~~s  570 (694)
T 3dm0_A          499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLSNCKLRSTLAGH-TGYV-STVAVS  570 (694)
T ss_dssp             ECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTCCEEEEECCC-SSCE-EEEEEC
T ss_pred             EECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECCCCcEEEEEcCC-CCCE-EEEEEe
Confidence            8876543222221 1122222233333  22  355555543      36889999876533221101 1111 12222 


Q ss_pred             -CCEEEEEeccCCcEEEEEeCCCCc
Q 040145          301 -YEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       301 -~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                       ++++++.|+. ...+.+||..+.+
T Consensus       571 pdg~~l~sg~~-Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          571 PDGSLCASGGK-DGVVLLWDLAEGK  594 (694)
T ss_dssp             TTSSEEEEEET-TSBCEEEETTTTE
T ss_pred             CCCCEEEEEeC-CCeEEEEECCCCc
Confidence             6777777775 4578899998764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.37  E-value=2.2  Score=41.36  Aligned_cols=120  Identities=14%  Similarity=0.169  Sum_probs=66.6

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeec-CCCc--EEeCCCCCCCCC---CC-CCCceEEEEccCCEEEEEeCccCCCCCCCce
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDL-THYC--WHTIPAMPCKDK---VC-PHGFRCVSIPREGTLFVCGGMVSDVDCPLDL  175 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~-~~~~--W~~l~~~~~~~~---~~-~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~  175 (402)
                      .++.+|+....    ...++++|. .+.+  |+.-........   .+ ....+.++.  ++.||+...        ...
T Consensus        61 ~~g~vyv~~~~----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~--------dg~  126 (571)
T 2ad6_A           61 IGDMMYVHSAF----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQA--------NGH  126 (571)
T ss_dssp             ETTEEEEECST----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECT--------TSE
T ss_pred             ECCEEEEEeCC----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE--CCEEEEEeC--------CCE
Confidence            47778876521    235899999 7765  876433221000   00 011122333  888888643        237


Q ss_pred             EEEEECCCCc--eeec-CCCccc-ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEc
Q 040145          176 VLKYEMQKNR--WTVM-NKMITA-RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTI  237 (402)
Q Consensus       176 ~~~~d~~t~~--W~~~-~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~  237 (402)
                      ++.+|..|++  |+.- ...... ....+.++.++++|+..+..+... ...+..||..|++  |+.-
T Consensus       127 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~-~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          127 LLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGV-RGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTC-CCEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCC-CCEEEEEECCCCcEEEEEc
Confidence            9999999985  8753 221111 112233456888887654321111 4578999999875  8653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=95.33  E-value=0.94  Score=40.58  Aligned_cols=134  Identities=15%  Similarity=0.147  Sum_probs=68.9

Q ss_pred             eEEEEECCCCceeecCCCc---ccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE
Q 040145          175 LVLKYEMQKNRWTVMNKMI---TARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA  250 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~---~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~  250 (402)
                      .+.+||..+++-.......   ....-.+++.. +++.++.|+.      -..+.++|..+++-..  .+.........+
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~------d~~i~iwd~~~~~~~~--~~~~h~~~V~~~  175 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK------DICIKVWDLAQQVVLS--SYRAHAAQVTCV  175 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEE--EECCCSSCEEEE
T ss_pred             EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC------CCeEEEEECCCCcEEE--EEcCcCCceEEE
Confidence            7899999887532221111   11111233332 5677777775      3468899998875322  222222222222


Q ss_pred             EE--CC-EEEEEcccccCCccCCcEEEEeCCCCCee-eccccccCCCceeEEEE---CCEEEEEeccCCcEEEEEeCCCC
Q 040145          251 VL--DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVGLREGWTGSSVVV---YEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       251 ~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      .+  ++ .+++.|+.+      ..+.+||+.+.+-. .+.. ........++.+   ++++++.|+. ...|.+||..+.
T Consensus       176 ~~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~-dg~v~~wd~~~~  247 (344)
T 4gqb_B          176 AASPHKDSVFLSCSED------NRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDE-NGTVSLVDTKST  247 (344)
T ss_dssp             EECSSCTTEEEEEETT------SCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEET-TSEEEEEESCC-
T ss_pred             EecCCCCCceeeeccc------cccccccccccceeeeeec-ceeeccceeeeecCCCCcceEEecc-CCcEEEEECCCC
Confidence            22  33 466767653      36889999876533 2221 111111112222   4667777765 457899999765


Q ss_pred             c
Q 040145          324 S  324 (402)
Q Consensus       324 ~  324 (402)
                      +
T Consensus       248 ~  248 (344)
T 4gqb_B          248 S  248 (344)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=95.33  E-value=0.47  Score=43.34  Aligned_cols=152  Identities=18%  Similarity=0.253  Sum_probs=78.7

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      .++++..++..++.|+.+       ..+.+||..+++-...-.- ....-.++... ++..++.|+.      -..+.+|
T Consensus       127 ~~v~~s~dg~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~------d~~v~iw  192 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAED-------RLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSG------DRTVRIW  192 (393)
T ss_dssp             EEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEET------TSEEEEE
T ss_pred             EEEEECCCCCEEEEEcCC-------CeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecC------CCcEEEE
Confidence            345555577777777752       2789999988754321110 11111223332 4555566654      4568899


Q ss_pred             cCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeee-cccccc--CCCcee--EEEE
Q 040145          228 DPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVGLR--EGWTGS--SVVV  300 (402)
Q Consensus       228 d~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~--~~~~~~--~~~~  300 (402)
                      |..++.....-....  .....+..  ++++++.|+.+      ..+..||..++.-.. +.....  ......  .+.+
T Consensus       193 d~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  264 (393)
T 1erj_A          193 DLRTGQCSLTLSIED--GVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF  264 (393)
T ss_dssp             ETTTTEEEEEEECSS--CEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred             ECCCCeeEEEEEcCC--CcEEEEEECCCCCEEEEEcCC------CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE
Confidence            998876443211111  11122222  57777777754      368899988765332 211000  111111  2233


Q ss_pred             --CCEEEEEeccCCcEEEEEeCCCC
Q 040145          301 --YEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       301 --~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                        ++..++.|+. ...+.+||..+.
T Consensus       265 ~~~g~~l~s~s~-d~~v~~wd~~~~  288 (393)
T 1erj_A          265 TRDGQSVVSGSL-DRSVKLWNLQNA  288 (393)
T ss_dssp             CTTSSEEEEEET-TSEEEEEEC---
T ss_pred             CCCCCEEEEEeC-CCEEEEEECCCC
Confidence              5677777665 557888888653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=95.30  E-value=1.3  Score=38.31  Aligned_cols=142  Identities=12%  Similarity=0.128  Sum_probs=66.0

Q ss_pred             CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeee
Q 040145          205 GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES  284 (402)
Q Consensus       205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~  284 (402)
                      ++..++.|+.      ...+.+||..+.. .................-++. ++.|+.+      ..+..||..+++-..
T Consensus       154 ~~~~l~~~~~------d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~~~d------g~i~i~d~~~~~~~~  219 (313)
T 3odt_A          154 SENKFLTASA------DKTIKLWQNDKVI-KTFSGIHNDVVRHLAVVDDGH-FISCSND------GLIKLVDMHTGDVLR  219 (313)
T ss_dssp             TTTEEEEEET------TSCEEEEETTEEE-EEECSSCSSCEEEEEEEETTE-EEEEETT------SEEEEEETTTCCEEE
T ss_pred             CCCEEEEEEC------CCCEEEEecCceE-EEEeccCcccEEEEEEcCCCe-EEEccCC------CeEEEEECCchhhhh
Confidence            5566666665      3457888833221 122211111111222233677 5555542      368999998764222


Q ss_pred             ccccccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeE
Q 040145          285 MAVGLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVG  362 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~  362 (402)
                      .-. .........+.. +++ ++.|+. ...+.+||..+.+....-  ..+.  ....++. ..+++ ++.|+.++.   
T Consensus       220 ~~~-~~~~~i~~~~~~~~~~-l~~~~~-dg~v~iwd~~~~~~~~~~--~~~~--~~i~~~~~~~~~~-~~~~~~dg~---  288 (313)
T 3odt_A          220 TYE-GHESFVYCIKLLPNGD-IVSCGE-DRTVRIWSKENGSLKQVI--TLPA--ISIWSVDCMSNGD-IIVGSSDNL---  288 (313)
T ss_dssp             EEE-CCSSCEEEEEECTTSC-EEEEET-TSEEEEECTTTCCEEEEE--ECSS--SCEEEEEECTTSC-EEEEETTSC---
T ss_pred             hhh-cCCceEEEEEEecCCC-EEEEec-CCEEEEEECCCCceeEEE--eccC--ceEEEEEEccCCC-EEEEeCCCc---
Confidence            111 111111111222 454 445554 568999999887644332  1221  1112333 34666 455665443   


Q ss_pred             EEEecccccc
Q 040145          363 HITRLSTSEK  372 (402)
Q Consensus       363 ~v~~~~~~~~  372 (402)
                       +..+|....
T Consensus       289 -i~iw~~~~~  297 (313)
T 3odt_A          289 -VRIFSQEKS  297 (313)
T ss_dssp             -EEEEESCGG
T ss_pred             -EEEEeCCCC
Confidence             555554333

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=95.29  E-value=1.8  Score=39.91  Aligned_cols=191  Identities=12%  Similarity=0.064  Sum_probs=101.7

Q ss_pred             EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEE
Q 040145          150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      .+++..++.||+....       ...+.++|+.++.-+.+....  ...+ .+.  -++.+|+.....     ...++.+
T Consensus       135 ~la~d~~g~lyv~d~~-------~~~I~~id~~~g~~~~~~~~~--~~~~-ia~~~~g~~l~~~d~~~-----~~~I~~~  199 (409)
T 3hrp_A          135 GIAAVGNNTVLAYQRD-------DPRVRLISVDDNKVTTVHPGF--KGGK-PAVTKDKQRVYSIGWEG-----THTVYVY  199 (409)
T ss_dssp             EEEECSTTEEEEEETT-------TTEEEEEETTTTEEEEEEETC--CBCB-CEECTTSSEEEEEBSST-----TCEEEEE
T ss_pred             EEEEeCCCCEEEEecC-------CCcEEEEECCCCEEEEeeccC--CCCc-eeEecCCCcEEEEecCC-----CceEEEE
Confidence            3444357889998753       347999999988765543221  1122 232  245677775431     1278899


Q ss_pred             cCCCCc-EEEcCCCCC--CCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc---cccCCCc---ee
Q 040145          228 DPVKGN-WRTIASMGT--NMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV---GLREGWT---GS  296 (402)
Q Consensus       228 d~~t~~-W~~~~~~~~--~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~~~~---~~  296 (402)
                      |+.++. ...+.....  ...-+..++.  ++.||+...       ...+++||+.+.....+..   .......   +.
T Consensus       200 d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i  272 (409)
T 3hrp_A          200 MKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL  272 (409)
T ss_dssp             EGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE
T ss_pred             EcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCccccE
Confidence            987653 233311111  1112223333  688999432       2379999998876544411   0111112   22


Q ss_pred             EEEE-CCEEEEEeccCCcEEEEEeCCCCceeecCCCC-CC---------ccccCCeEEEE-eCCEEEEEec-CceeeeEE
Q 040145          297 SVVV-YEHLFVVSELERMKLKVYDPSTDSWETIEGPP-LP---------EQICKPFAVNA-CDCRVYVVGR-NLHVAVGH  363 (402)
Q Consensus       297 ~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~-~p---------~~~~~~~~~~~-~~~~i~v~GG-~~~~~~~~  363 (402)
                      ++.- ++.||+.... ...|++||++.. ...+.+.. .+         .......++++ .+|.|||.-. .++.    
T Consensus       273 a~~p~~g~lyv~d~~-~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~----  346 (409)
T 3hrp_A          273 IYYFVDSNFYMSDQN-LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC----  346 (409)
T ss_dssp             EEETTTTEEEEEETT-TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE----
T ss_pred             EEeCCCCEEEEEeCC-CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE----
Confidence            2232 5889987543 668999998765 23322111 00         00123345554 3678999875 4443    


Q ss_pred             EEecc
Q 040145          364 ITRLS  368 (402)
Q Consensus       364 v~~~~  368 (402)
                      |..++
T Consensus       347 I~~~~  351 (409)
T 3hrp_A          347 LRKLD  351 (409)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66666

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=95.29  E-value=0.25  Score=43.86  Aligned_cols=155  Identities=12%  Similarity=0.014  Sum_probs=78.9

Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKG  232 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~  232 (402)
                      .++.+|+.++.       ...++++|+.+++....-+.+.......++.. ++ .+|+.+..      ...+.+||+.++
T Consensus         9 ~~~~~~v~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t~   75 (349)
T 1jmx_B            9 AGHEYMIVTNY-------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDTC   75 (349)
T ss_dssp             TTCEEEEEEET-------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTTT
T ss_pred             CCCEEEEEeCC-------CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCCC
Confidence            37788888765       34899999999865432222211122334433 33 57777643      457999999988


Q ss_pred             cEEEcCCCCC-----CCcceeEEEE-CCE-EEEEcccc--cCC---ccCCcEEEEeCCCCCeeec-cc-cccCCCceeEE
Q 040145          233 NWRTIASMGT-----NMASYDAAVL-DGK-LLVTEGWL--WPF---FVSPRGQVYDPSTDNWESM-AV-GLREGWTGSSV  298 (402)
Q Consensus       233 ~W~~~~~~~~-----~~~~~~~~~~-~g~-ly~~gG~~--~~~---~~~~~~~~yd~~~~~W~~~-~~-~~~~~~~~~~~  298 (402)
                      +-...-..+.     ...-...+.. +|+ +|+.+...  ...   .....+.+||+.+++-... .. ..+........
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  155 (349)
T 1jmx_B           76 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA  155 (349)
T ss_dssp             EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE
T ss_pred             cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeE
Confidence            6543222211     0111222332 554 45443210  000   0024789999987542221 11 11111111122


Q ss_pred             EECCEEEEEeccCCcEEEEEeCCCCcee
Q 040145          299 VVYEHLFVVSELERMKLKVYDPSTDSWE  326 (402)
Q Consensus       299 ~~~~~l~~~gg~~~~~~~~yd~~~~~W~  326 (402)
                      .-+|++|+. +.   .+++||+.+.+-.
T Consensus       156 s~dg~l~~~-~~---~i~~~d~~~~~~~  179 (349)
T 1jmx_B          156 ADDGSLYVA-GP---DIYKMDVKTGKYT  179 (349)
T ss_dssp             CTTSCEEEE-SS---SEEEECTTTCCEE
T ss_pred             CCCCcEEEc-cC---cEEEEeCCCCcee
Confidence            336777764 32   4999999876544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.29  E-value=2.6  Score=41.83  Aligned_cols=113  Identities=20%  Similarity=0.322  Sum_probs=69.8

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCccc--------ccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITA--------RSFFASGVIGGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ++.||+....        ..++.+|..|++  |+.-...+..        ....+.++.+++||+...       ...+.
T Consensus        70 ~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~l~  134 (689)
T 1yiq_A           70 DGVMYTTGPF--------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGRLE  134 (689)
T ss_dssp             TTEEEEECGG--------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEE
T ss_pred             CCEEEEEcCC--------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCEEE
Confidence            8999997642        369999999985  8874433211        012234567889888653       35689


Q ss_pred             EEcCCCCc--EEEcCC-CCCC--CcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eee
Q 040145          226 VLDPVKGN--WRTIAS-MGTN--MASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WES  284 (402)
Q Consensus       226 ~yd~~t~~--W~~~~~-~~~~--~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~  284 (402)
                      .+|..|++  |+.-.. -+..  ....+.++.++.+|+-.+... ......++.||..+++  |+.
T Consensus       135 AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          135 AIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAE-FGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             EEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEE
T ss_pred             EEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCc-cCCCCEEEEEECCCCcEEEEe
Confidence            99998875  876432 1111  112233566899887433211 1123479999998875  875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=95.25  E-value=1.3  Score=38.30  Aligned_cols=182  Identities=10%  Similarity=0.045  Sum_probs=88.3

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF  199 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  199 (402)
                      .+.++|..+++....-......    ..-.++....++..++.|+.+       ..+.+||..+++-...  +.......
T Consensus        46 tV~iWd~~tg~~~~~~~~~~~~----~~V~~v~~~~~~~~l~sgs~D-------g~v~iw~~~~~~~~~~--~~~h~~~~  112 (318)
T 4ggc_A           46 SVYLWSASSGDILQLLQMEQPG----EYISSVAWIKEGNYLAVGTSS-------AEVQLWDVQQQKRLRN--MTSHSARV  112 (318)
T ss_dssp             EEEEEETTTCCEEEEEECCSTT----CCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEE--EECCSSCE
T ss_pred             EEEEEECCCCCEEEEEEecCCC----CeEEEEEECCCCCEEEEEECC-------CcEEEeecCCceeEEE--ecCccceE
Confidence            4888999988765432222111    223445555577888888763       2789999988763322  11111222


Q ss_pred             EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE--EEECCEEEEEcccccCCccCCcEEEEeC
Q 040145          200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA--AVLDGKLLVTEGWLWPFFVSPRGQVYDP  277 (402)
Q Consensus       200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~--~~~~g~ly~~gG~~~~~~~~~~~~~yd~  277 (402)
                      .....++.+.+.|+.      ...+..++..+...... .+.........  ...++..++.|+.+      ..+.+||.
T Consensus       113 ~~~~~~~~~l~s~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~  179 (318)
T 4ggc_A          113 GSLSWNSYILSSGSR------SGHIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGND------NLVNVWPS  179 (318)
T ss_dssp             EEEEEETTEEEEEET------TSEEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEEEEEETT------SCEEEEES
T ss_pred             EEeecCCCEEEEEec------CCceEeeecCCCceeEE-EEcCccCceEEEEEcCCCCEEEEEecC------cceeEEEC
Confidence            233344555566654      33445555544332211 11111111111  12256666666543      36888998


Q ss_pred             CCCCeee--ccccccC-CCceeEEEE--CCE-EEEEeccCCcEEEEEeCCCCceee
Q 040145          278 STDNWES--MAVGLRE-GWTGSSVVV--YEH-LFVVSELERMKLKVYDPSTDSWET  327 (402)
Q Consensus       278 ~~~~W~~--~~~~~~~-~~~~~~~~~--~~~-l~~~gg~~~~~~~~yd~~~~~W~~  327 (402)
                      .+++-..  ....... ......+..  ++. +++.+|.....+.++|.....-..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~  235 (318)
T 4ggc_A          180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS  235 (318)
T ss_dssp             SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE
T ss_pred             CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc
Confidence            7654221  1110111 111111111  333 444455556678889987765443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.25  E-value=2.4  Score=41.08  Aligned_cols=116  Identities=20%  Similarity=0.305  Sum_probs=70.9

Q ss_pred             EEEEECCEEEEEcCCCCCCCCCCeeEEEcC-CCCc--EEEcCCCCCC--------CcceeEEEECCEEEEEcccccCCcc
Q 040145          200 ASGVIGGMIYVAGGSSADLFELDSAEVLDP-VKGN--WRTIASMGTN--------MASYDAAVLDGKLLVTEGWLWPFFV  268 (402)
Q Consensus       200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~-~t~~--W~~~~~~~~~--------~~~~~~~~~~g~ly~~gG~~~~~~~  268 (402)
                      +.++.++.||+....      ...++.+|. .|++  |+.-......        ......++.+++||+....      
T Consensus        57 ~P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d------  124 (571)
T 2ad6_A           57 APLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN------  124 (571)
T ss_dssp             CCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT------
T ss_pred             ccEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCC------
Confidence            345679999998752      246899999 7765  9875332211        0112345678999886532      


Q ss_pred             CCcEEEEeCCCC--CeeeccccccC--CCceeEEEECCEEEEEeccC----CcEEEEEeCCCC--ceeec
Q 040145          269 SPRGQVYDPSTD--NWESMAVGLRE--GWTGSSVVVYEHLFVVSELE----RMKLKVYDPSTD--SWETI  328 (402)
Q Consensus       269 ~~~~~~yd~~~~--~W~~~~~~~~~--~~~~~~~~~~~~l~~~gg~~----~~~~~~yd~~~~--~W~~~  328 (402)
                       ..++++|.+++  .|+.-......  ......++.++.+|+..+..    ...++.||.++.  .|+.-
T Consensus       125 -g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          125 -GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             -SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             -CEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence             36899999877  48753221111  11222256788887753311    358999999875  48653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.20  E-value=1.9  Score=39.65  Aligned_cols=203  Identities=11%  Similarity=0.112  Sum_probs=111.1

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc----eee-cCCCcc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR----WTV-MNKMIT  194 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~----W~~-~~~~~~  194 (402)
                      .+..+|+....+..+....      ....+.+....++.||+.--.       ...++++++....    ... +...  
T Consensus        93 ~I~~i~l~~~~~~~~~~~~------~~~~~l~~d~~~~~lywsD~~-------~~~I~~~~~~g~~~~~~~~~~~~~~--  157 (400)
T 3p5b_L           93 EVRKMTLDRSEYTSLIPNL------RNVVALDTEVASNRIYWSDLS-------QRMICSTQLDRAHGVSSYDTVISRD--  157 (400)
T ss_dssp             EEEEECTTSCSCEEEECSC------SCEEEEEEETTTTEEEEEETT-------TTEEEEEEC------CCCEEEECSS--
T ss_pred             eeEEEccCCcceeEecccc------CcceEEeeeeccCceEEEecC-------CCeEEEEEcccCCCCCcceEEEeCC--
Confidence            4677888777665543211      122344444347899987543       3478889886521    222 2211  


Q ss_pred             cccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC--CCCCCCcceeEEE--ECCEEEEEcccccCCcc
Q 040145          195 ARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA--SMGTNMASYDAAV--LDGKLLVTEGWLWPFFV  268 (402)
Q Consensus       195 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~  268 (402)
                      .....++++  .++.||+.-..      ...++++|+....-+.+.  .+..|   .+.++  .+|.||+.-...     
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~------~~~I~~~~~~g~~~~~l~~~~~~~P---~~iavdp~~g~ly~td~~~-----  223 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT-----  223 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETT------TTEEEEECTTTCSEEEEEECSSCCE---EEEEEETTTTEEEEEECSS-----
T ss_pred             CCCcccEEEEecCCceEEEECC------CCeEEEEeCCCCceEEEEeCCCCCc---ceEEEecccCeEEEEeCCC-----
Confidence            112234444  37899998654      567899999876554442  22222   12333  268899875211     


Q ss_pred             CCcEEEEeCCCCCeeeccccccCCC-ceeEEE-ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEe
Q 040145          269 SPRGQVYDPSTDNWESMAVGLREGW-TGSSVV-VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNAC  346 (402)
Q Consensus       269 ~~~~~~yd~~~~~W~~~~~~~~~~~-~~~~~~-~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~  346 (402)
                      ...++++++....=..+.. ....+ .+.++- .+++||+.... ...|+++|.+...-..+..  .+......+++++.
T Consensus       224 ~~~I~~~~~dG~~~~~~~~-~~l~~P~glavd~~~~~lY~aD~~-~~~I~~~d~dG~~~~~~~~--~~~~l~~P~gl~v~  299 (400)
T 3p5b_L          224 PAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILE--DEKRLAHPFSLAVF  299 (400)
T ss_dssp             SCCEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCCCEEEEE--CSSTTSSEEEEEEE
T ss_pred             CCEEEEEeCCCCccEEEEE-CCCCceEEEEEEeCCCEEEEEECC-CCEEEEEeCCCCccEEEEe--CCCCCCCCEEEEEe
Confidence            2478999886543332211 01111 112222 36889998543 6789999997654333321  11122455688889


Q ss_pred             CCEEEEEec
Q 040145          347 DCRVYVVGR  355 (402)
Q Consensus       347 ~~~i~v~GG  355 (402)
                      ++.||+.--
T Consensus       300 ~~~lywtd~  308 (400)
T 3p5b_L          300 EDKVFWTDI  308 (400)
T ss_dssp             TTEEEEEES
T ss_pred             CCEEEEecC
Confidence            999999874

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=95.05  E-value=1.4  Score=38.89  Aligned_cols=200  Identities=11%  Similarity=0.002  Sum_probs=101.3

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc-CCEEEEEeCccCCC----------CCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR-EGTLFVCGGMVSDV----------DCP  172 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~v~GG~~~~~----------~~~  172 (402)
                      ++.||+....     ..+..||+.++..+.+.......  .......+++.. ++.||+........          ...
T Consensus        91 ~g~l~v~d~~-----~~i~~~d~~~g~~~~~~~~~~~~--~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~  163 (322)
T 2fp8_A           91 NNQLYIVDCY-----YHLSVVGSEGGHATQLATSVDGV--PFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDK  163 (322)
T ss_dssp             TTEEEEEETT-----TEEEEECTTCEECEEEESEETTE--ECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCC
T ss_pred             CCcEEEEECC-----CCEEEEeCCCCEEEEecccCCCC--cccccceEEEecCCCEEEEECCcccccccccceehcccCC
Confidence            5678877421     12678888866554443221110  001223345545 67899874321000          012


Q ss_pred             CceEEEEECCCCceeecCCCcccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcCCC---CcEEEcCCCCCCCcce
Q 040145          173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVI-G-GMIYVAGGSSADLFELDSAEVLDPVK---GNWRTIASMGTNMASY  247 (402)
Q Consensus       173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t---~~W~~~~~~~~~~~~~  247 (402)
                      ...+++||+.+++.+.+..  ......+++.. + +.||+.-..      ...+.+||..+   ...+....++.    .
T Consensus       164 ~g~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~~~g----P  231 (322)
T 2fp8_A          164 TGRLIKYDPSTKETTLLLK--ELHVPGGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVKIPN----P  231 (322)
T ss_dssp             CEEEEEEETTTTEEEEEEE--EESCCCEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEECSS----E
T ss_pred             CceEEEEeCCCCEEEEecc--CCccCcceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEeCCC----C
Confidence            3579999998887654321  01112233433 3 358887432      46788998875   23443333322    3


Q ss_pred             eEEEE--CCEEEEEcccccCC----ccCCcEEEEeCCCCCeeecccccc--CCCceeEEEECCEEEEEeccCCcEEEEEe
Q 040145          248 DAAVL--DGKLLVTEGWLWPF----FVSPRGQVYDPSTDNWESMAVGLR--EGWTGSSVVVYEHLFVVSELERMKLKVYD  319 (402)
Q Consensus       248 ~~~~~--~g~ly~~gG~~~~~----~~~~~~~~yd~~~~~W~~~~~~~~--~~~~~~~~~~~~~l~~~gg~~~~~~~~yd  319 (402)
                      ....+  +|.||+........    .....+.+||+....-..+..+-.  ......++.-+++||+.. ...+.|.+|+
T Consensus       232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~-~~~~~i~~~~  310 (322)
T 2fp8_A          232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT-LFHGSVGILV  310 (322)
T ss_dssp             EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEEC-SSCSEEEEEE
T ss_pred             CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEee-cCCCceEEEe
Confidence            33333  57888875321000    001368899986544444432111  112222345688999764 3467899998


Q ss_pred             CCCC
Q 040145          320 PSTD  323 (402)
Q Consensus       320 ~~~~  323 (402)
                      ++.+
T Consensus       311 ~~~~  314 (322)
T 2fp8_A          311 YDKK  314 (322)
T ss_dssp             C---
T ss_pred             cccc
Confidence            8654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.02  E-value=3.1  Score=41.27  Aligned_cols=119  Identities=15%  Similarity=0.163  Sum_probs=67.4

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCC---CC-CCCceEEEEccCCEEEEEeCccCCCCCCCceE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDK---VC-PHGFRCVSIPREGTLFVCGGMVSDVDCPLDLV  176 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~---~~-~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~  176 (402)
                      .++.+|+...     ...++++|..+.+  |+.-...+....   .+ ....+.++.  ++.||+...        ...+
T Consensus        69 ~~g~vyv~~~-----~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~v~v~~~--------dg~l  133 (689)
T 1yiq_A           69 VDGVMYTTGP-----FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW--KGKVYVGVL--------DGRL  133 (689)
T ss_dssp             ETTEEEEECG-----GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECT--------TSEE
T ss_pred             ECCEEEEEcC-----CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE--CCEEEEEcc--------CCEE
Confidence            4777887642     2348899998776  875433221000   00 011122333  788887542        2379


Q ss_pred             EEEECCCCc--eeecCC-Ccc--cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEc
Q 040145          177 LKYEMQKNR--WTVMNK-MIT--ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTI  237 (402)
Q Consensus       177 ~~~d~~t~~--W~~~~~-~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~  237 (402)
                      +.+|..|++  |+.-.. -+.  .....+.++.++.+|+..+...... ...+..||..|++  |+.-
T Consensus       134 ~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~-~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          134 EAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGV-RGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             EEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCC-BCEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCC-CCEEEEEECCCCcEEEEec
Confidence            999999985  876432 111  1122234567888887543222112 5679999999886  8753

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=95.02  E-value=1.4  Score=42.72  Aligned_cols=144  Identities=10%  Similarity=0.111  Sum_probs=73.1

Q ss_pred             CCeeEEEcCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc---cccCCCcee
Q 040145          221 LDSAEVLDPVKGNWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV---GLREGWTGS  296 (402)
Q Consensus       221 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~~~~~~  296 (402)
                      ...+.+.|..+.....+..++..+.-+.... -+|+.+++....     .+.+.++|.++++-...-+   ..|.+..+.
T Consensus       319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~-----sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~  393 (567)
T 1qks_A          319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA-----RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA  393 (567)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred             CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC-----CCeEEEEECCCCcEEEEEeccCcCCCCccce
Confidence            4567888887765444444444444444433 256644443321     3579999999876332211   122222232


Q ss_pred             EEEE--CCEEEEEeccCCcEEEEEeCCCC-----ceeecCCCCCCccccCCeEEEEeC-CEEEEEe--cCceeeeEEEEe
Q 040145          297 SVVV--YEHLFVVSELERMKLKVYDPSTD-----SWETIEGPPLPEQICKPFAVNACD-CRVYVVG--RNLHVAVGHITR  366 (402)
Q Consensus       297 ~~~~--~~~l~~~gg~~~~~~~~yd~~~~-----~W~~~~~~~~p~~~~~~~~~~~~~-~~i~v~G--G~~~~~~~~v~~  366 (402)
                      ....  .+.+|+.+-.....|.++|.++.     .|+.+..++.... ...+.....+ ..+||--  +.+....+.|.+
T Consensus       394 ~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~-g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v  472 (567)
T 1qks_A          394 NFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNPEAEISGSVAV  472 (567)
T ss_dssp             EEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEEECTTCSSHHHHTCEEE
T ss_pred             eeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC-CCEEEEeCCCCCeEEEecCCCCCcccCceEEE
Confidence            2233  36677765444467889988763     3988774433311 1111222233 4677744  222112344666


Q ss_pred             cccc
Q 040145          367 LSTS  370 (402)
Q Consensus       367 ~~~~  370 (402)
                      ||..
T Consensus       473 ~d~~  476 (567)
T 1qks_A          473 FDIK  476 (567)
T ss_dssp             EEGG
T ss_pred             EECC
Confidence            6643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=94.93  E-value=1.9  Score=38.27  Aligned_cols=151  Identities=11%  Similarity=0.091  Sum_probs=77.1

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNW  234 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  234 (402)
                      ++.+++.|+.+       ..+.+||..+++-.............+++.. ++.+++.|+.      ...+.+||..+..-
T Consensus       138 ~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~------dg~i~iwd~~~~~~  204 (343)
T 3lrv_A          138 NTEYFIWADNR-------GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP------DGILDVYNLSSPDQ  204 (343)
T ss_dssp             -CCEEEEEETT-------CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT------TSCEEEEESSCTTS
T ss_pred             CCCEEEEEeCC-------CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC------CCEEEEEECCCCCC
Confidence            56677777753       2689999988765332221222122233333 5677777775      45688999987753


Q ss_pred             EEcCCCCC-CCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCe-eeccccc-cCCCce-eEEEE--CCEEEE
Q 040145          235 RTIASMGT-NMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNW-ESMAVGL-REGWTG-SSVVV--YEHLFV  306 (402)
Q Consensus       235 ~~~~~~~~-~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~-~~~~~~-~~~~~--~~~l~~  306 (402)
                      .. ..+.. .......+.+  ++..++.|+.       ..+..||+.+.+- ..+.... ...... .++.+  +++.++
T Consensus       205 ~~-~~~~~~h~~~v~~l~fs~~g~~l~s~~~-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  276 (343)
T 3lrv_A          205 AS-SRFPVDEEAKIKEVKFADNGYWMVVECD-------QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI  276 (343)
T ss_dssp             CC-EECCCCTTSCEEEEEECTTSSEEEEEES-------SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred             Cc-cEEeccCCCCEEEEEEeCCCCEEEEEeC-------CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence            20 11122 1122223333  6666666662       2689999987542 1121100 001111 12333  566666


Q ss_pred             EeccCCcEEEEE--eCCCCceee
Q 040145          307 VSELERMKLKVY--DPSTDSWET  327 (402)
Q Consensus       307 ~gg~~~~~~~~y--d~~~~~W~~  327 (402)
                      .|+.+...+.+|  +...+.|..
T Consensus       277 ~~s~~d~~i~v~~~~~~~~~~~~  299 (343)
T 3lrv_A          277 AYSNESNSLTIYKFDKKTKNWTK  299 (343)
T ss_dssp             EEETTTTEEEEEEECTTTCSEEE
T ss_pred             EecCCCCcEEEEEEcccccceEe
Confidence            644323345555  446678987

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=94.91  E-value=1.8  Score=37.82  Aligned_cols=189  Identities=12%  Similarity=0.092  Sum_probs=92.4

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC--ceeecCCCcccccc-eEEEEE---CCEEEEEcCCCCCCCCCC
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN--RWTVMNKMITARSF-FASGVI---GGMIYVAGGSSADLFELD  222 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~--~W~~~~~~~~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~  222 (402)
                      .++.+..++.+++.|+.+       ..+.+||..++  .++.+..+...... .++...   ++.+++.|+.      ..
T Consensus        15 ~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~------dg   81 (351)
T 3f3f_A           15 HDVVYDFYGRHVATCSSD-------QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY------DK   81 (351)
T ss_dssp             EEEEECSSSSEEEEEETT-------SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET------TS
T ss_pred             eEEEEcCCCCEEEEeeCC-------CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC------CC
Confidence            334443466677777652       26888888754  34443333222222 233333   2667777775      34


Q ss_pred             eeEEEcCCCC-------cEEEcCCCCCCCcceeEEEE--C--CEEEEEcccccCCccCCcEEEEeCCCCC----eeeccc
Q 040145          223 SAEVLDPVKG-------NWRTIASMGTNMASYDAAVL--D--GKLLVTEGWLWPFFVSPRGQVYDPSTDN----WESMAV  287 (402)
Q Consensus       223 ~~~~yd~~t~-------~W~~~~~~~~~~~~~~~~~~--~--g~ly~~gG~~~~~~~~~~~~~yd~~~~~----W~~~~~  287 (402)
                      .+.+||..+.       .|..+..+.........+.+  +  +.+++.|+.+      ..+..||+.+.+    |..-..
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~  155 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND------GILRLYDALEPSDLRSWTLTSE  155 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------CEEEEEECSSTTCTTCCEEEEE
T ss_pred             eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC------CcEEEecCCChHHhcccccccc
Confidence            5778887664       23443333322222333333  3  6667776643      368899987654    221110


Q ss_pred             -----cccCCCc-e-eEEEE-----CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCC----EE
Q 040145          288 -----GLREGWT-G-SSVVV-----YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDC----RV  350 (402)
Q Consensus       288 -----~~~~~~~-~-~~~~~-----~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~----~i  350 (402)
                           ..+.... . .++..     ++.++++|+.+ ..+..++........+..  +......-.++.. .++    .+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~--~~~h~~~i~~~~~~p~~~~~~~~  232 (351)
T 3f3f_A          156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE-QAIIYQRGKDGKLHVAAK--LPGHKSLIRSISWAPSIGRWYQL  232 (351)
T ss_dssp             EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT-EEEEEEECTTSCEEEEEE--CCCCCSCEEEEEECCCSSCSSEE
T ss_pred             ccccccccCCcccceeEEEeccCCCCCcEEEEecCC-CcEEEEccCCCceeeeee--cCCCCcceeEEEECCCCCCcceE
Confidence                 0011111 1 11222     36777777764 345556666666544432  2211112223333 343    78


Q ss_pred             EEEecCcee
Q 040145          351 YVVGRNLHV  359 (402)
Q Consensus       351 ~v~GG~~~~  359 (402)
                      ++.|+.+..
T Consensus       233 l~s~~~dg~  241 (351)
T 3f3f_A          233 IATGCKDGR  241 (351)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEcCCCe
Confidence            888876544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=94.87  E-value=0.012  Score=57.62  Aligned_cols=36  Identities=17%  Similarity=0.381  Sum_probs=29.2

Q ss_pred             CCCCCCcHHHHHHhhccCc-cchhhhhhhccHhHHHh
Q 040145           51 PFIPGLPDDVALNCLLRLP-VESHAACRAVCKRWHLL   86 (402)
Q Consensus        51 ~~~~~Lp~dl~~~il~rlp-~~~l~~~~~v~k~W~~l   86 (402)
                      ..|+.||+|++.+||.+|| .++..++..|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4688999999999999999 99999999999999988

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=94.85  E-value=2.4  Score=39.22  Aligned_cols=156  Identities=8%  Similarity=0.042  Sum_probs=78.3

Q ss_pred             eEEEEccCCE-EEEEeCccCCCCCCCceEEEEECC--CCceee-cCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCe
Q 040145          149 RCVSIPREGT-LFVCGGMVSDVDCPLDLVLKYEMQ--KNRWTV-MNKMITARSFFASGVI-GGMIYVAGGSSADLFELDS  223 (402)
Q Consensus       149 ~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~d~~--t~~W~~-~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~  223 (402)
                      .++++..++. |++.|+.+       ..+.+||..  ++.... +.....+....+++.. +++.+++|+.      ...
T Consensus       106 ~~~~~s~d~~~l~~~~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------~g~  172 (450)
T 2vdu_B          106 RNLRLTSDESRLIACADSD-------KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK------FGD  172 (450)
T ss_dssp             EEEEECTTSSEEEEEEGGG-------TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET------TSE
T ss_pred             EEEEEcCCCCEEEEEECCC-------CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC------CCc
Confidence            3344434554 46777652       368889987  543222 1110111111223332 4555666654      355


Q ss_pred             eEEEcCCCCcEEE--cCCCCCCCcceeEE--EEC---CEEEEEcccccCCccCCcEEEEeCCCCCeeec-cccccCCCce
Q 040145          224 AEVLDPVKGNWRT--IASMGTNMASYDAA--VLD---GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM-AVGLREGWTG  295 (402)
Q Consensus       224 ~~~yd~~t~~W~~--~~~~~~~~~~~~~~--~~~---g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~~~  295 (402)
                      +++||..+.....  +..+.........+  .-+   +++++.|+.+      ..+.+||+.+++-... .......-..
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~h~~~v~~  246 (450)
T 2vdu_B          173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD------EHIKISHYPQCFIVDKWLFGHKHFVSS  246 (450)
T ss_dssp             EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT------SCEEEEEESCTTCEEEECCCCSSCEEE
T ss_pred             EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEEECCCCceeeeeecCCCCceEE
Confidence            7888876654321  11111111112222  236   7777777753      3688999877653321 1111111111


Q ss_pred             eEEEECCEEEEEeccCCcEEEEEeCCCCce
Q 040145          296 SSVVVYEHLFVVSELERMKLKVYDPSTDSW  325 (402)
Q Consensus       296 ~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W  325 (402)
                      .... ++.+++.|+. ...+.+||..+.+.
T Consensus       247 ~~~s-d~~~l~s~~~-d~~v~vwd~~~~~~  274 (450)
T 2vdu_B          247 ICCG-KDYLLLSAGG-DDKIFAWDWKTGKN  274 (450)
T ss_dssp             EEEC-STTEEEEEES-SSEEEEEETTTCCE
T ss_pred             EEEC-CCCEEEEEeC-CCeEEEEECCCCcE
Confidence            1223 7777777775 56899999987653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=94.79  E-value=1.5  Score=41.94  Aligned_cols=180  Identities=7%  Similarity=0.042  Sum_probs=86.5

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      .++++..++..++.|+.+       ..+.+||.....-..+...  ...-.+++.. +++.++.++.      -..+.+|
T Consensus       389 ~~~~~s~dg~~l~~~~~d-------~~v~~~~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~------d~~v~~w  453 (577)
T 2ymu_A          389 RGVAFSPDGQTIASASDD-------KTVKLWNRNGQLLQTLTGH--SSSVWGVAFSPDDQTIASASD------DKTVKLW  453 (577)
T ss_dssp             EEEEECTTSSCEEEEETT-------SEEEEECTTCCEEEEEECC--SSCEEEEEECTTSSEEEEEET------TSEEEEE
T ss_pred             EEEEECCCCCEEEEEeCC-------CEEEEEeCCCCEEEEecCC--CCCeEEEEECCCCCEEEEEcC------CCEEEEE
Confidence            444554567777777652       2688888543322222111  1111122222 4566666654      3467888


Q ss_pred             cCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEE-EECCEE
Q 040145          228 DPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSV-VVYEHL  304 (402)
Q Consensus       228 d~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~l  304 (402)
                      |.....-..+....   .....+.+  ++++++.++.+      ..+..||.....-..+.. .. ......+ .-++++
T Consensus       454 ~~~~~~~~~~~~~~---~~v~~~~~spd~~~las~~~d------~~i~iw~~~~~~~~~~~~-h~-~~v~~l~~s~dg~~  522 (577)
T 2ymu_A          454 NRNGQLLQTLTGHS---SSVRGVAFSPDGQTIASASDD------KTVKLWNRNGQLLQTLTG-HS-SSVRGVAFSPDGQT  522 (577)
T ss_dssp             ETTSCEEEEEECCS---SCEEEEEECTTSCEEEEEETT------SEEEEEETTSCEEEEEEC-CS-SCEEEEEECTTSSC
T ss_pred             ECCCCEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCC------CEEEEEcCCCCEEEEEeC-CC-CCEEEEEEcCCCCE
Confidence            87554443332211   11222222  67777777643      367888854332222211 11 1111111 226777


Q ss_pred             EEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCcee
Q 040145          305 FVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHV  359 (402)
Q Consensus       305 ~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~  359 (402)
                      ++.|+. ...+.+||.....-..+.+  -.  ..........+++.++.||.+..
T Consensus       523 l~s~~~-dg~v~lwd~~~~~~~~~~~--h~--~~v~~~~fs~dg~~l~s~~~D~~  572 (577)
T 2ymu_A          523 IASASD-DKTVKLWNRNGQLLQTLTG--HS--SSVWGVAFSPDGQTIASASSDKT  572 (577)
T ss_dssp             EEEEET-TSEEEEECTTSCEEEEEEC--CS--SCEEEEEECTTSSCEEEEETTSC
T ss_pred             EEEEEC-cCEEEEEeCCCCEEEEEcC--CC--CCEEEEEEcCCCCEEEEEeCCCE
Confidence            776665 4578899975443333321  01  01111223457787777876544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=94.78  E-value=1.9  Score=37.60  Aligned_cols=199  Identities=14%  Similarity=0.080  Sum_probs=98.0

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNW  234 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  234 (402)
                      ++.||+.+-.       .+.+++|++ ++..+.... +. ....+.+. -++++|+....      ...+.+||+. ++.
T Consensus        56 g~~l~~~d~~-------~~~i~~~~~-~g~~~~~~~-~~-~~~~gl~~d~dG~l~v~~~~------~~~v~~~~~~-g~~  118 (305)
T 3dr2_A           56 QRTLVWSDLV-------GRRVLGWRE-DGTVDVLLD-AT-AFTNGNAVDAQQRLVHCEHG------RRAITRSDAD-GQA  118 (305)
T ss_dssp             GTEEEEEETT-------TTEEEEEET-TSCEEEEEE-SC-SCEEEEEECTTSCEEEEETT------TTEEEEECTT-SCE
T ss_pred             CCEEEEEECC-------CCEEEEEeC-CCCEEEEeC-CC-CccceeeECCCCCEEEEECC------CCEEEEECCC-CCE
Confidence            4457777543       336888988 454433221 11 11122222 25778876432      3568889986 666


Q ss_pred             EEcCCCCCC-C-cce-eEEE-ECCEEEEE----ccccc-------CCccCCcEEEEeCCCCCeeeccccccCCCceeEEE
Q 040145          235 RTIASMGTN-M-ASY-DAAV-LDGKLLVT----EGWLW-------PFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV  299 (402)
Q Consensus       235 ~~~~~~~~~-~-~~~-~~~~-~~g~ly~~----gG~~~-------~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~  299 (402)
                      +.+...... + ... ..++ -+|.||+.    |....       .......+++||+.+++.+.+. ....+ .+.+..
T Consensus       119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p-~gl~~s  196 (305)
T 3dr2_A          119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP-NGLAFS  196 (305)
T ss_dssp             EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE-EEEEEC
T ss_pred             EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC-cceEEc
Confidence            655321111 1 111 1222 27889986    32110       0011246899999888877664 22111 111122


Q ss_pred             ECCE-EEEEeccC----CcEEEEEeCCCCceeecCCC-CCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEecccccc
Q 040145          300 VYEH-LFVVSELE----RMKLKVYDPSTDSWETIEGP-PLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       300 ~~~~-l~~~gg~~----~~~~~~yd~~~~~W~~~~~~-~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                      -+++ ||+.....    ...+++||...+........ ..+.  ....+++ -.+|+||+..+.      .|++|++..+
T Consensus       197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~--~~pdgi~~d~~G~lwv~~~~------gv~~~~~~g~  268 (305)
T 3dr2_A          197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD--GLPDGFCVDRGGWLWSSSGT------GVCVFDSDGQ  268 (305)
T ss_dssp             TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS--SCCCSEEECTTSCEEECCSS------EEEEECTTSC
T ss_pred             CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC--CCCCeEEECCCCCEEEecCC------cEEEECCCCC
Confidence            2454 77764321    25899999876542211100 1111  1112233 356778876631      3888887443


Q ss_pred             cCceeeeEEEEeCCC
Q 040145          373 KWSFSVQWQVVDAPD  387 (402)
Q Consensus       373 ~~~~~~~W~~~~~~~  387 (402)
                            .-..+..|.
T Consensus       269 ------~~~~~~~~~  277 (305)
T 3dr2_A          269 ------LLGHIPTPG  277 (305)
T ss_dssp             ------EEEEEECSS
T ss_pred             ------EEEEEECCC
Confidence                  334455554

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=94.77  E-value=3  Score=39.83  Aligned_cols=200  Identities=8%  Similarity=0.049  Sum_probs=95.1

Q ss_pred             EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce-
Q 040145          121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF-  199 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~-  199 (402)
                      +..+|.....-..+....       ....++++..++..++.|+.+       ..+.+||.....-..+..   ..... 
T Consensus       327 i~~w~~~~~~~~~~~~~~-------~~v~~~~~s~~g~~l~~~~~d-------g~v~~~~~~~~~~~~~~~---~~~~v~  389 (577)
T 2ymu_A          327 VKLWNRNGQHLQTLTGHS-------SSVWGVAFSPDGQTIASASDD-------KTVKLWNRNGQLLQTLTG---HSSSVR  389 (577)
T ss_dssp             EEEEETTSCEEEEECCCS-------SCEEEEEECTTSSEEEEEETT-------SEEEEEETTCCEEEEEEC---CSSCEE
T ss_pred             EEEEeCCCCeeEEEeCCC-------CCEEEEEECCCCCEEEEEeCC-------CEEEEEcCCCCEEEEecC---CCCCeE
Confidence            455665554443332211       223344554567777777652       267888864433332221   11111 


Q ss_pred             EEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEe
Q 040145          200 ASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYD  276 (402)
Q Consensus       200 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd  276 (402)
                      +++.. +++.++.|+.      ...+.+||.....-..+....   .....+.+  ++++++.++.+      ..+..||
T Consensus       390 ~~~~s~dg~~l~~~~~------d~~v~~~~~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~~~~~d------~~v~~w~  454 (577)
T 2ymu_A          390 GVAFSPDGQTIASASD------DKTVKLWNRNGQLLQTLTGHS---SSVWGVAFSPDDQTIASASDD------KTVKLWN  454 (577)
T ss_dssp             EEEECTTSSCEEEEET------TSEEEEECTTCCEEEEEECCS---SCEEEEEECTTSSEEEEEETT------SEEEEEE
T ss_pred             EEEECCCCCEEEEEeC------CCEEEEEeCCCCEEEEecCCC---CCeEEEEECCCCCEEEEEcCC------CEEEEEE
Confidence            22222 4566666664      346788886443333322211   11122222  66777766643      3678888


Q ss_pred             CCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEE-EEeCCEEEEEec
Q 040145          277 PSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAV-NACDCRVYVVGR  355 (402)
Q Consensus       277 ~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~-~~~~~~i~v~GG  355 (402)
                      .....-..+.. ....-......-++++++.++. ...+.+||.....-..+..  -.   ..-.++ ...++++++.|+
T Consensus       455 ~~~~~~~~~~~-~~~~v~~~~~spd~~~las~~~-d~~i~iw~~~~~~~~~~~~--h~---~~v~~l~~s~dg~~l~s~~  527 (577)
T 2ymu_A          455 RNGQLLQTLTG-HSSSVRGVAFSPDGQTIASASD-DKTVKLWNRNGQLLQTLTG--HS---SSVRGVAFSPDGQTIASAS  527 (577)
T ss_dssp             TTSCEEEEEEC-CSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSCEEEEEEC--CS---SCEEEEEECTTSSCEEEEE
T ss_pred             CCCCEEEEEcC-CCCCEEEEEEcCCCCEEEEEeC-CCEEEEEcCCCCEEEEEeC--CC---CCEEEEEEcCCCCEEEEEE
Confidence            75443333321 1111111111226777777665 4578889975443333321  00   111122 235778777787


Q ss_pred             Ccee
Q 040145          356 NLHV  359 (402)
Q Consensus       356 ~~~~  359 (402)
                      .+..
T Consensus       528 ~dg~  531 (577)
T 2ymu_A          528 DDKT  531 (577)
T ss_dssp             TTSE
T ss_pred             CcCE
Confidence            6543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=94.76  E-value=2.1  Score=38.40  Aligned_cols=189  Identities=9%  Similarity=-0.069  Sum_probs=92.0

Q ss_pred             CceEEEEECCCCceeecCCCcccccceEEEEECC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE
Q 040145          173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVIGG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV  251 (402)
Q Consensus       173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~  251 (402)
                      ...++++|..+++-+.+...+..........-++ .|+....       ...++++|+.++.-+.+...+..........
T Consensus        59 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~-------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~  131 (388)
T 3pe7_A           59 PWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD-------GRNLMRVDLATLEENVVYQVPAEWVGYGTWV  131 (388)
T ss_dssp             SCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET-------TTEEEEEETTTCCEEEEEECCTTEEEEEEEE
T ss_pred             CceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC-------CCeEEEEECCCCcceeeeechhhccccccee
Confidence            3479999999998777654432222111122234 4554442       2468889999887665544443322112222


Q ss_pred             --ECCEEEEEccccc----------------CCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEE-CCEEEEEeccC
Q 040145          252 --LDGKLLVTEGWLW----------------PFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVV-YEHLFVVSELE  311 (402)
Q Consensus       252 --~~g~ly~~gG~~~----------------~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~-~~~l~~~gg~~  311 (402)
                        -++++++.-....                .......++.+|+.+++-..+... . ...... ..- +|+.+++....
T Consensus       132 ~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~~~~~~sp~dg~~l~~~~~~  209 (388)
T 3pe7_A          132 ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE-N-QWLGHPIYRPYDDSTVAFCHEG  209 (388)
T ss_dssp             ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-S-SCEEEEEEETTEEEEEEEEECS
T ss_pred             ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-C-ccccccEECCCCCCEEEEEEec
Confidence              2444433211000                011124789999998876555431 1 112222 233 45544443322


Q ss_pred             -----CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCE-EEEEecCceeeeEEEEecccccc
Q 040145          312 -----RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCR-VYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       312 -----~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                           ...++.+|.++.....+..  ........+.....+|+ |+.+..........++.+|....
T Consensus       210 ~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          210 PHDLVDARMWLINEDGTNMRKVKT--HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             CTTTSSCSEEEEETTSCCCEESCC--CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             CCCCCcceEEEEeCCCCceEEeee--CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence                 3489999998776666542  11100111122234555 54444322222235777776443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=94.76  E-value=2.1  Score=37.89  Aligned_cols=105  Identities=8%  Similarity=-0.006  Sum_probs=54.7

Q ss_pred             CeEEEEEEeCCCCceeEEEeecCCCcEEe-CCCCCCCCCCCCCCceEEEEcc-CCEEEEEeCccCCCCCCCceEEEEECC
Q 040145          105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHT-IPAMPCKDKVCPHGFRCVSIPR-EGTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       105 ~~l~~~gg~~~~~~~~~~~~d~~~~~W~~-l~~~~~~~~~~~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      +.+++.++.+.    .+.+||..+.+-.. +....       ....++.... ++.+++.|+.+       ..+.+||..
T Consensus        85 ~~~l~~~~~dg----~i~v~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~  146 (366)
T 3k26_A           85 HPLLAVAGSRG----IIRIINPITMQCIKHYVGHG-------NAINELKFHPRDPNLLLSVSKD-------HALRLWNIQ  146 (366)
T ss_dssp             CEEEEEEETTC----EEEEECTTTCCEEEEEESCC-------SCEEEEEECSSCTTEEEEEETT-------SCEEEEETT
T ss_pred             CCEEEEecCCC----EEEEEEchhceEeeeecCCC-------CcEEEEEECCCCCCEEEEEeCC-------CeEEEEEee
Confidence            34555554322    47788887665322 21111       2233444433 56777777752       269999998


Q ss_pred             CCceee-cCCCcccccc-eEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          183 KNRWTV-MNKMITARSF-FASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       183 t~~W~~-~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      +++-.. +..+...... ..+... ++..++.|+.      ...+.+||..+..
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~  194 (366)
T 3k26_A          147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM------DHSLKLWRINSKR  194 (366)
T ss_dssp             TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET------TSCEEEEESCSHH
T ss_pred             cCeEEEEecccccccCceeEEEECCCCCEEEEecC------CCCEEEEECCCCc
Confidence            875433 2211211222 222322 4556666665      3468889887653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=94.75  E-value=1.1  Score=41.24  Aligned_cols=134  Identities=9%  Similarity=-0.003  Sum_probs=73.1

Q ss_pred             eEEEEECCCCceeecCCCccccc-ceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145          175 LVLKYEMQKNRWTVMNKMITARS-FFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL  252 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~  252 (402)
                      .|++||..|++-..+-.+..... -.+++.. +++.++.|+.      -..+.+||..+++-..  .+........+...
T Consensus       126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~------Dg~v~iWd~~~~~~~~--~~~~h~~~v~~~s~  197 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS------SAEVQLWDVQQQKRLR--NMTSHSARVGSLSW  197 (420)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEE--EECCCSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC------CCeEEEEEcCCCcEEE--EEeCCCCceEEEee
Confidence            79999999987665433332222 2233333 5677777776      3568899998875322  22222223344556


Q ss_pred             CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCC
Q 040145          253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      ++.+.+.|+.+      ..+..+|..................... ..-++..++.++. .+.+.++|..+.
T Consensus       198 ~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~-D~~v~i~~~~~~  262 (420)
T 4gga_A          198 NSYILSSGSRS------GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN-DNLVNVWPSAPG  262 (420)
T ss_dssp             ETTEEEEEETT------SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-TSCEEEEESSCC
T ss_pred             CCCEEEEEeCC------CceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec-cccceEEeeccc
Confidence            77777777653      3677788765443221110111111111 2235666666665 456778887654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=94.69  E-value=1.9  Score=38.91  Aligned_cols=175  Identities=9%  Similarity=0.041  Sum_probs=88.3

Q ss_pred             eEEEEECCCCceeec--CCCcccccc--eEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCC--cEEEcCCCCCCCcc
Q 040145          175 LVLKYEMQKNRWTVM--NKMITARSF--FASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKG--NWRTIASMGTNMAS  246 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~--~~~~~~r~~--~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~  246 (402)
                      .+.+||..+++-...  ...+.....  .++..  .++.+++.|+.      -..+.+||....  .-..+.   .....
T Consensus       181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~------D~~v~~wd~~~~~~~~~~~~---~h~~~  251 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC------DTTVRLWDLRITSRAVRTYH---GHEGD  251 (380)
T ss_dssp             CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET------TSCEEEEETTTTCCCCEEEC---CCSSC
T ss_pred             cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC------CCeEEEEECCCCCcceEEEC---CcCCC
Confidence            688999988764332  122222111  12222  25677888876      345788887632  112211   11111


Q ss_pred             eeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeec-ccccc--C---CCceeE-EEECCEEEEEeccCCcEEEE
Q 040145          247 YDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM-AVGLR--E---GWTGSS-VVVYEHLFVVSELERMKLKV  317 (402)
Q Consensus       247 ~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~--~---~~~~~~-~~~~~~l~~~gg~~~~~~~~  317 (402)
                      ...+.+  ++..++.|+.+      ..+..||+.++.-... .....  .   ...... ...+|++++.|+. ...+.+
T Consensus       252 v~~v~~~p~~~~l~s~s~D------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~v  324 (380)
T 3iz6_a          252 INSVKFFPDGQRFGTGSDD------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYV  324 (380)
T ss_dssp             CCEEEECTTSSEEEEECSS------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-TSCEEE
T ss_pred             eEEEEEecCCCeEEEEcCC------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-CCCEEE
Confidence            222333  67777777754      3688999887643221 11000  0   011112 2236777777665 567999


Q ss_pred             EeCCCCceee-cCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEec
Q 040145          318 YDPSTDSWET-IEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRL  367 (402)
Q Consensus       318 yd~~~~~W~~-~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~  367 (402)
                      ||..+.+-.. +............+.....+++.++.|+.++.  ..+|.+
T Consensus       325 wd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~--i~iW~~  373 (380)
T 3iz6_a          325 WDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN--LKIWAF  373 (380)
T ss_dssp             EETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC--EEEEEC
T ss_pred             EECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC--EEEEec
Confidence            9987765432 22111111112222333457888888887655  334444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=94.66  E-value=1.8  Score=36.83  Aligned_cols=191  Identities=12%  Similarity=-0.014  Sum_probs=101.6

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.||+...    ....+.+||+....-..+....     ...-.+.+.-..++.||+....       .+.+.++|+..
T Consensus        47 ~~~ly~~d~----~~~~I~~~~~~g~~~~~~~~~~-----~~~p~~ia~d~~~~~lyv~d~~-------~~~I~~~~~~g  110 (267)
T 1npe_A           47 DKVVYWTDI----SEPSIGRASLHGGEPTTIIRQD-----LGSPEGIALDHLGRTIFWTDSQ-------LDRIEVAKMDG  110 (267)
T ss_dssp             TTEEEEEET----TTTEEEEEESSSCCCEEEECTT-----CCCEEEEEEETTTTEEEEEETT-------TTEEEEEETTS
T ss_pred             CCEEEEEEC----CCCEEEEEecCCCCcEEEEECC-----CCCccEEEEEecCCeEEEEECC-------CCEEEEEEcCC
Confidence            567887652    2345788888765433322111     0022334443236899998643       34799999875


Q ss_pred             CceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE---CCEEEE
Q 040145          184 NRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL---DGKLLV  258 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~---~g~ly~  258 (402)
                      ..-+.+..... .....+++-  ++.||+......    ...++++++....-+.+....  ........+   ++.||+
T Consensus       111 ~~~~~~~~~~~-~~P~~i~vd~~~g~lyv~~~~~~----~~~I~~~~~dg~~~~~~~~~~--~~~P~gia~d~~~~~lyv  183 (267)
T 1npe_A          111 TQRRVLFDTGL-VNPRGIVTDPVRGNLYWTDWNRD----NPKIETSHMDGTNRRILAQDN--LGLPNGLTFDAFSSQLCW  183 (267)
T ss_dssp             CSCEEEECSSC-SSEEEEEEETTTTEEEEEECCSS----SCEEEEEETTSCCCEEEECTT--CSCEEEEEEETTTTEEEE
T ss_pred             CCEEEEEECCC-CCccEEEEeeCCCEEEEEECCCC----CcEEEEEecCCCCcEEEEECC--CCCCcEEEEcCCCCEEEE
Confidence            43333211111 112334443  589999863211    356788887644333332111  112233333   468998


Q ss_pred             EcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCcee
Q 040145          259 TEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWE  326 (402)
Q Consensus       259 ~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~  326 (402)
                      .-..      .+.+.+||+....-..+......+ . ..+.-++.+|+.... .+.+.++|+++.+-.
T Consensus       184 ~d~~------~~~I~~~~~~g~~~~~~~~~~~~P-~-gi~~d~~~lyva~~~-~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          184 VDAG------THRAECLNPAQPGRRKVLEGLQYP-F-AVTSYGKNLYYTDWK-TNSVIAMDLAISKEM  242 (267)
T ss_dssp             EETT------TTEEEEEETTEEEEEEEEECCCSE-E-EEEEETTEEEEEETT-TTEEEEEETTTTEEE
T ss_pred             EECC------CCEEEEEecCCCceEEEecCCCCc-e-EEEEeCCEEEEEECC-CCeEEEEeCCCCCce
Confidence            7543      357999999764322222111111 1 224458889987543 568999999876543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.59  E-value=1.6  Score=39.28  Aligned_cols=148  Identities=11%  Similarity=-0.004  Sum_probs=79.4

Q ss_pred             CceEEEEECCCCceeecCCCcccccceEEEEEC--CE-EEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE
Q 040145          173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVIG--GM-IYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA  249 (402)
Q Consensus       173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~--~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~  249 (402)
                      ...++++|..+++.+.+..  ............  ++ |+++.. .........++++|..+..++.+.. ..+......
T Consensus       167 ~~~l~~~d~~~g~~~~~~~--~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~  242 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQ--DTAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTH  242 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEE
T ss_pred             cceEEEEECCCCcEEeecc--CCcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCCCccccc
Confidence            4579999999988766542  122222233332  43 544432 2211112578999998887777654 211112222


Q ss_pred             EEE--CCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-CCEEEEEecc---------------
Q 040145          250 AVL--DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-YEHLFVVSEL---------------  310 (402)
Q Consensus       250 ~~~--~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~---------------  310 (402)
                      ..+  +|+ |++.....+  .....++.+|+.+++...+.. .+.  ......- +|+++++++.               
T Consensus       243 ~~~spdg~~l~~~~~~~~--~~~~~l~~~d~~~g~~~~l~~-~~~--~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~  317 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSYFKG--QTDRVIYKANPETLENEEVMV-MPP--CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIE  317 (396)
T ss_dssp             EEECTTSSCEEEEEEETT--TCCEEEEEECTTTCCEEEEEE-CCS--EEEEEECSSSSEEEEEECCC----------CCC
T ss_pred             eEECCCCCEEEEEecCCC--CccceEEEEECCCCCeEEeee-CCC--CCCCccCCCCceEEEecCCcceeeccccccccC
Confidence            222  565 444432211  111249999999887766543 221  1122334 7777666431               


Q ss_pred             CCcEEEEEeCCCCceeecC
Q 040145          311 ERMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       311 ~~~~~~~yd~~~~~W~~~~  329 (402)
                      ....++.+|+.+.+...+.
T Consensus       318 ~~~~i~~~d~~~~~~~~l~  336 (396)
T 3c5m_A          318 NDPFLYVLNTKAKSAQKLC  336 (396)
T ss_dssp             CCCEEEEEETTTTBCCEEE
T ss_pred             CCCcEEEEecccCceEEcc
Confidence            2358999999887766554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.59  E-value=3.9  Score=40.38  Aligned_cols=113  Identities=17%  Similarity=0.284  Sum_probs=69.6

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCccc--------ccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITA--------RSFFASGVIGGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ++.||+....        ..++.+|..|++  |+.-...+..        ....+.++.+++||+...       ...+.
T Consensus        66 ~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~  130 (668)
T 1kv9_A           66 DGVIYTSMSW--------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGRLI  130 (668)
T ss_dssp             TTEEEEEEGG--------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSEEE
T ss_pred             CCEEEEECCC--------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CCEEE
Confidence            8999997642        379999999885  8875433211        012234567889888653       35689


Q ss_pred             EEcCCCCc--EEEcCCCCCC--CcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eee
Q 040145          226 VLDPVKGN--WRTIASMGTN--MASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WES  284 (402)
Q Consensus       226 ~yd~~t~~--W~~~~~~~~~--~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~  284 (402)
                      .+|..|++  |+.-..-+..  ......++.++.+|+..+... ......++.||..+++  |+.
T Consensus       131 alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          131 ALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAE-YGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             EEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEE
T ss_pred             EEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCC-cCCCCEEEEEECCCCcEEEEe
Confidence            99998876  8764321111  112233556888887433211 1112479999998875  875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.56  E-value=2.9  Score=38.75  Aligned_cols=224  Identities=8%  Similarity=0.048  Sum_probs=113.4

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      ++.||+....     ..+.++|+..+....+....       .....+++..++ .||+......   .....++.++..
T Consensus       149 ~g~Lyv~d~~-----~~I~~id~~~~~v~~~~~~~-------~~P~~ia~d~~G~~lyvad~~~~---~~~~~v~~~~~~  213 (430)
T 3tc9_A          149 HNHLYLVGEQ-----HPTRLIDFEKEYVSTVYSGL-------SKVRTICWTHEADSMIITNDQNN---NDRPNNYILTRE  213 (430)
T ss_dssp             EEEEEEEEBT-----EEEEEEETTTTEEEEEECCC-------SCEEEEEECTTSSEEEEEECCSC---TTSEEEEEEEGG
T ss_pred             CCeEEEEeCC-----CcEEEEECCCCEEEEEecCC-------CCcceEEEeCCCCEEEEEeCCCC---cccceEEEEeCC
Confidence            4667776421     66889999988877664422       112333332344 5998865321   122356667764


Q ss_pred             CCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCE-EE
Q 040145          183 KNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGK-LL  257 (402)
Q Consensus       183 t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~-ly  257 (402)
                      . .+.....+..-...+.+++.  ++.||+.--.      ...+++||+.+..-..+...+.. .......+  +|+ ||
T Consensus       214 g-~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~------~~~V~~~~~~~~~~~~~~~~~~~-~~P~gia~~pdG~~ly  285 (430)
T 3tc9_A          214 S-GFKVITELTKGQNCNGAETHPINGELYFNSWN------AGQVFRYDFTTQETTPLFTIQDS-GWEFHIQFHPSGNYAY  285 (430)
T ss_dssp             G-TSCSEEEEEECSSCCCEEECTTTCCEEEEETT------TTEEEEEETTTTEEEEEEECSSS-SCCEEEEECTTSSEEE
T ss_pred             C-ceeeeeeeccCCCceEEEEeCCCCEEEEEECC------CCEEEEEECCCCcEEEEEEcCCC-CcceeEEEcCCCCEEE
Confidence            3 33311111112223444443  5788887532      45799999987765333222221 11222223  555 88


Q ss_pred             EEcccccCCccCCcEEEEeCC--CCCeee---ccccc-----------cCCCce-e-EEEE----------CCEEEEEec
Q 040145          258 VTEGWLWPFFVSPRGQVYDPS--TDNWES---MAVGL-----------REGWTG-S-SVVV----------YEHLFVVSE  309 (402)
Q Consensus       258 ~~gG~~~~~~~~~~~~~yd~~--~~~W~~---~~~~~-----------~~~~~~-~-~~~~----------~~~l~~~gg  309 (402)
                      +.-..      .+.+++||..  ++....   +....           ...... . .+.+          ++.||+.-.
T Consensus       286 v~d~~------~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~  359 (430)
T 3tc9_A          286 IVVVN------QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDR  359 (430)
T ss_dssp             EEETT------TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEG
T ss_pred             EEECC------CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEEC
Confidence            87542      2467776654  222211   11000           000111 1 2333          368888754


Q ss_pred             cCCcEEEEEeCCCCceeecCCCC-------------CCccccCCeEEEEe--CCEEEEEecCce
Q 040145          310 LERMKLKVYDPSTDSWETIEGPP-------------LPEQICKPFAVNAC--DCRVYVVGRNLH  358 (402)
Q Consensus       310 ~~~~~~~~yd~~~~~W~~~~~~~-------------~p~~~~~~~~~~~~--~~~i~v~GG~~~  358 (402)
                      . ...|.++|+. .....+.+..             .........++++.  ++.|||.--.++
T Consensus       360 ~-n~~I~~i~~~-G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~  421 (430)
T 3tc9_A          360 E-NHCIRILTPQ-GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENR  421 (430)
T ss_dssp             G-GTEEEEECTT-SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred             C-CcEEEEECCC-CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCC
Confidence            3 5689999975 4555554321             11112345566665  588999865443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=94.54  E-value=2.3  Score=37.51  Aligned_cols=233  Identities=11%  Similarity=0.010  Sum_probs=111.4

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCC--------------
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSD--------------  168 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~--------------  168 (402)
                      +..|++...........++.+|..+++...+...+       . ........++ .|++.......              
T Consensus        70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-------~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A           70 GKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-------N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-------E-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred             CCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-------C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence            44555544433234556888998887766654333       1 2333443345 44444311000              


Q ss_pred             -C----CCCCceEEEEECCCCce-eecCCCcccccceEEEEECCEEEEEcCCCCCCC--C-CCeeEEEcCCCCcEEEcCC
Q 040145          169 -V----DCPLDLVLKYEMQKNRW-TVMNKMITARSFFASGVIGGMIYVAGGSSADLF--E-LDSAEVLDPVKGNWRTIAS  239 (402)
Q Consensus       169 -~----~~~~~~~~~~d~~t~~W-~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~--~-~~~~~~yd~~t~~W~~~~~  239 (402)
                       +    ......++++|..+++. +.+.. +   .........+.+++.+..+....  . ...++.+|  ++.++.+..
T Consensus       142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~  215 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE  215 (347)
T ss_dssp             --------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE
T ss_pred             cCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEecc
Confidence             0    01135799999999887 65544 2   33334444333555554332111  1 34678888  677766543


Q ss_pred             CCCCCcceeEEEECCE-EEEEccccc-CCccCCcEEEEeCCCCCeeeccccccCCCcee-EEEECCEEEEEeccC-CcEE
Q 040145          240 MGTNMASYDAAVLDGK-LLVTEGWLW-PFFVSPRGQVYDPSTDNWESMAVGLREGWTGS-SVVVYEHLFVVSELE-RMKL  315 (402)
Q Consensus       240 ~~~~~~~~~~~~~~g~-ly~~gG~~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~l~~~gg~~-~~~~  315 (402)
                      -    .......-+|+ |++.+.... .......++.+|  ++++..+...... .... .+..++ +|+.+..+ ...+
T Consensus       216 ~----~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~sdg-~~~~~~~~~~~~l  287 (347)
T 2gop_A          216 K----VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKDGK-VYFTLFEEGSVNL  287 (347)
T ss_dssp             E----ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEETTE-EEEEEEETTEEEE
T ss_pred             C----cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEcCc-EEEEEecCCcEEE
Confidence            2    11222244665 444432211 111234788999  6666666432211 1221 222255 66665543 3456


Q ss_pred             EEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecc
Q 040145          316 KVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLS  368 (402)
Q Consensus       316 ~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~  368 (402)
                      + ++  +.+...+.  +..   ....++.... .+++.+..... ..++|.+|
T Consensus       288 ~-~~--~g~~~~~~--~~~---~~v~~~~~s~-~~~~~~~~~~~-~~~l~~~~  330 (347)
T 2gop_A          288 Y-IW--DGEIKPIA--KGR---HWIMGFDVDE-IVVYLKETATR-LRELFTWD  330 (347)
T ss_dssp             E-EE--SSSEEEEE--CSS---SEEEEEEESS-SEEEEEECSSS-CCEEEEES
T ss_pred             E-Ec--CCceEEEe--cCC---CeEEeeeeeC-cEEEEEcCCCC-hHHheEeC
Confidence            6 66  34444432  111   1112333334 66666554332 24677776

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=94.40  E-value=4.4  Score=40.19  Aligned_cols=182  Identities=9%  Similarity=-0.072  Sum_probs=83.6

Q ss_pred             ceEEEEECCC-CceeecCCC-cccccceEEEEEC-CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCC----Ccc
Q 040145          174 DLVLKYEMQK-NRWTVMNKM-ITARSFFASGVIG-GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTN----MAS  246 (402)
Q Consensus       174 ~~~~~~d~~t-~~W~~~~~~-~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~----~~~  246 (402)
                      ..++++|..+ ++-+.+... ........++.-+ ..|++...... .. ...++++|..+++...+......    ...
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~-~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRD-QK-KLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETT-SS-EEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             eEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEeccc-CC-eEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence            3788999988 765544321 1111111122233 34554433111 11 46789999999887655221111    011


Q ss_pred             eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE--EEECC-EEEEEeccC---CcEEEEEeC
Q 040145          247 YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS--VVVYE-HLFVVSELE---RMKLKVYDP  320 (402)
Q Consensus       247 ~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~--~~~~~-~l~~~gg~~---~~~~~~yd~  320 (402)
                      .....-+|++++.+..++    ...++.+|.... ...+...  .......  ..-++ .|++.+..+   ...+|..+.
T Consensus       341 ~~~~spdg~~~~~~~~~g----~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERTG----FQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             CCEECTTSCEEEEECTTS----SCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             ceEECCCCeEEEEecCCC----ccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            122233777766665432    246888887655 5555431  1111111  12245 455555433   335666666


Q ss_pred             CCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145          321 STDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       321 ~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      ....-..+..  ..   .........+++.+++.........+++.++.
T Consensus       414 ~g~~~~~l~~--~~---~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          414 QGGQPQRLSK--AP---GMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             TCCCCEECCC--SC---SEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             CCCCeeeccc--CC---CceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence            5443344431  11   11122233456555544333223344555543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=94.28  E-value=2.5  Score=36.90  Aligned_cols=191  Identities=14%  Similarity=0.140  Sum_probs=97.5

Q ss_pred             EEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145          152 SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPV  230 (402)
Q Consensus       152 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~  230 (402)
                      ++..++.||+..-.       ...+++||+.++.-.... .  +...++++.. ++++|+......    ...+..||+.
T Consensus        38 a~~~~g~lyv~d~~-------~~~I~~~d~~g~~~~~~~-~--~~~p~gia~~~dG~l~vad~~~~----~~~v~~~d~~  103 (306)
T 2p4o_A           38 ASAPDGTIFVTNHE-------VGEIVSITPDGNQQIHAT-V--EGKVSGLAFTSNGDLVATGWNAD----SIPVVSLVKS  103 (306)
T ss_dssp             EECTTSCEEEEETT-------TTEEEEECTTCCEEEEEE-C--SSEEEEEEECTTSCEEEEEECTT----SCEEEEEECT
T ss_pred             EECCCCCEEEEeCC-------CCeEEEECCCCceEEEEe-C--CCCceeEEEcCCCcEEEEeccCC----cceEEEEcCC
Confidence            33346778887532       347999999865322211 1  1223344443 567888763211    1247889988


Q ss_pred             CCcEEEcCCCCCCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeCCCCC---eeeccc----cccCCCcee-EEEE-
Q 040145          231 KGNWRTIASMGTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDPSTDN---WESMAV----GLREGWTGS-SVVV-  300 (402)
Q Consensus       231 t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~~~~~---W~~~~~----~~~~~~~~~-~~~~-  300 (402)
                      +++.+.+...+..+.....+.. ++.+|+....      ...++++|+.++.   |..-..    ......... .+.. 
T Consensus       104 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~d  177 (306)
T 2p4o_A          104 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSY------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF  177 (306)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETT------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred             CCeEEEEEeCCCccccCcccccCCCcEEEEECC------CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcC
Confidence            8888776555544433333323 5567775421      2378999987642   211110    000111111 1233 


Q ss_pred             CCEEEEEeccCCcEEEEEeCCC-CceeecCCCCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEecccc
Q 040145          301 YEHLFVVSELERMKLKVYDPST-DSWETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTS  370 (402)
Q Consensus       301 ~~~l~~~gg~~~~~~~~yd~~~-~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~  370 (402)
                      ++.||+.-. ..+.|++||.+. .+.....  ..... ....++++ .+|+|||.-...+.    |.++++.
T Consensus       178 g~~lyv~d~-~~~~I~~~~~~~~g~~~~~~--~~~~~-~~P~gi~vd~dG~l~va~~~~~~----V~~~~~~  241 (306)
T 2p4o_A          178 GNFLYVSNT-EKMLLLRIPVDSTDKPGEPE--IFVEQ-TNIDDFAFDVEGNLYGATHIYNS----VVRIAPD  241 (306)
T ss_dssp             TTEEEEEET-TTTEEEEEEBCTTSCBCCCE--EEEES-CCCSSEEEBTTCCEEEECBTTCC----EEEECTT
T ss_pred             CCEEEEEeC-CCCEEEEEEeCCCCCCCccE--EEecc-CCCCCeEECCCCCEEEEeCCCCe----EEEECCC
Confidence            457887643 367899999875 2211110  00000 11223333 46788887654333    7777764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=94.24  E-value=0.048  Score=49.85  Aligned_cols=181  Identities=13%  Similarity=0.081  Sum_probs=72.1

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE  180 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d  180 (402)
                      .++.+|+...+     ..++++|..+.+  |+.-.  . +.     ....++  .++.+|+.++.       ...++.+|
T Consensus         8 ~~~~v~~gs~d-----g~v~a~d~~tG~~~W~~~~--~-~~-----~s~p~~--~~g~~~v~~s~-------dg~l~a~d   65 (369)
T 2hz6_A            8 PETLLFVSTLD-----GSLHAVSKRTGSIKWTLKE--D-PV-----LQVPTH--VEEPAFLPDPN-------DGSLYTLG   65 (369)
T ss_dssp             CTTEEEEEETT-----SEEEEEETTTCCEEEEEEC--C-CS-----CCCC-------CCEEECTT-------TCCEEEC-
T ss_pred             eCCEEEEEcCC-----CEEEEEECCCCCEEEEecC--C-Cc-----eecceE--cCCCEEEEeCC-------CCEEEEEE
Confidence            45667765422     248899988775  75432  1 11     011112  26667777643       22699999


Q ss_pred             CCCC--ceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCCcceeEEEECCE
Q 040145          181 MQKN--RWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNMASYDAAVLDGK  255 (402)
Q Consensus       181 ~~t~--~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~g~  255 (402)
                      ..|+  .|+.-...+... ..+.+. .++.||+ |+.      ...+..+|+.|++  |+.-..-.     ...+..++.
T Consensus        66 ~~tG~~~w~~~~~~~~~~-~~sp~~~~~~~v~~-g~~------dg~v~a~D~~tG~~~w~~~~~~~-----~~~~p~~~~  132 (369)
T 2hz6_A           66 SKNNEGLTKLPFTIPELV-QASPCRSSDGILYM-GKK------QDIWYVIDLLTGEKQQTLSSAFA-----DSLSPSTSL  132 (369)
T ss_dssp             ----CCSEECSCCHHHHH-TTCSCC-----CCC-CEE------EEEEEEECCC---------------------------
T ss_pred             CCCCceeeeeeccCcccc-ccCceEecCCEEEE-EeC------CCEEEEEECCCCcEEEEecCCCc-----ccccccCCE
Confidence            9876  465422211111 111111 3445543 322      3468899998765  65432110     011113455


Q ss_pred             EEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc--eee
Q 040145          256 LLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS--WET  327 (402)
Q Consensus       256 ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~--W~~  327 (402)
                      +|+. +.+      ..+.++|+.+++  |+.-...............++.+|+. .. ...++.+|..+.+  |+.
T Consensus       133 v~~~-~~d------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~-~~-dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          133 LYLG-RTE------YTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVS-NG-DGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             EEEE-EEE------EEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEE-ET-SCEEEEECTTTCCEEEEE
T ss_pred             EEEE-ecC------CEEEEEECCCCCEEEeEecccccCccccCCccccceEEEE-CC-CCEEEEEECCCCcEEEEe
Confidence            5553 321      268889988764  87432111000000000112556553 22 3467788876553  654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.09  E-value=5  Score=39.61  Aligned_cols=118  Identities=13%  Similarity=0.154  Sum_probs=66.9

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCc--EEeCCCCCCCCC---CC-CCCceEEEEccCCEEEEEeCccCCCCCCCceE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYC--WHTIPAMPCKDK---VC-PHGFRCVSIPREGTLFVCGGMVSDVDCPLDLV  176 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~--W~~l~~~~~~~~---~~-~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~  176 (402)
                      .++.+|+...     ...++++|..+.+  |+.-...+....   .+ ....+.++.  ++.||+...        ...+
T Consensus        65 ~~g~vyv~~~-----~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~--------dg~l  129 (668)
T 1kv9_A           65 HDGVIYTSMS-----WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTL--------DGRL  129 (668)
T ss_dssp             ETTEEEEEEG-----GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECT--------TSEE
T ss_pred             ECCEEEEECC-----CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CCEEEEEcC--------CCEE
Confidence            4778887653     2358899988776  876433221000   00 001122333  788887542        2379


Q ss_pred             EEEECCCCc--eeecCCCcc--cccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEE
Q 040145          177 LKYEMQKNR--WTVMNKMIT--ARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRT  236 (402)
Q Consensus       177 ~~~d~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~  236 (402)
                      +.+|..|++  |+.-..-+.  .....+.++.++++|+..+..... ....+..||..|++  |+.
T Consensus       130 ~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~-~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          130 IALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYG-VRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             EEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTC-CBCEEEEEETTTCCEEEEE
T ss_pred             EEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcC-CCCEEEEEECCCCcEEEEe
Confidence            999999985  876432111  112223455688888754322211 14679999999876  875

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=93.96  E-value=3.4  Score=37.25  Aligned_cols=180  Identities=13%  Similarity=0.141  Sum_probs=88.0

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEE-ccCCEEEEEeCccCCCCCCCceEEEEECCCC-c-eeecCCCcccc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSI-PREGTLFVCGGMVSDVDCPLDLVLKYEMQKN-R-WTVMNKMITAR  196 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~-~-W~~~~~~~~~r  196 (402)
                      .+.+||..+..-...-....+. ..........+ ..++.+++.|+.+       ..+.+||..+. . -..+..  ...
T Consensus       181 ~i~~wd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~sgs~D-------~~v~~wd~~~~~~~~~~~~~--h~~  250 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGSEFPS-GHTADVLSLSINSLNANMFISGSCD-------TTVRLWDLRITSRAVRTYHG--HEG  250 (380)
T ss_dssp             CEEEECTTTCCEEEEECCCSSS-SCCSCEEEEEECSSSCCEEEEEETT-------SCEEEEETTTTCCCCEEECC--CSS
T ss_pred             cEEEEEcCCCcEEEEeecccCC-CCccCeEEEEeecCCCCEEEEEECC-------CeEEEEECCCCCcceEEECC--cCC
Confidence            3778888877643321111100 00011122222 2366788888763       26889998632 1 111111  011


Q ss_pred             cceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc-CCCCC----CCcceeEEE--ECCEEEEEcccccCCcc
Q 040145          197 SFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI-ASMGT----NMASYDAAV--LDGKLLVTEGWLWPFFV  268 (402)
Q Consensus       197 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~----~~~~~~~~~--~~g~ly~~gG~~~~~~~  268 (402)
                      .-.+++.. ++..++.|+.      -..+.+||..++.-... ...+.    ......++.  .+|++++.|+.+     
T Consensus       251 ~v~~v~~~p~~~~l~s~s~------D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----  319 (380)
T 3iz6_a          251 DINSVKFFPDGQRFGTGSD------DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN-----  319 (380)
T ss_dssp             CCCEEEECTTSSEEEEECS------SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT-----
T ss_pred             CeEEEEEecCCCeEEEEcC------CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC-----
Confidence            11223332 5566777775      34588999988753322 11111    111122222  267777777653     


Q ss_pred             CCcEEEEeCCCCCeee-ccccccCCCce--eEE--EECCEEEEEeccCCcEEEEEeCCCC
Q 040145          269 SPRGQVYDPSTDNWES-MAVGLREGWTG--SSV--VVYEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       269 ~~~~~~yd~~~~~W~~-~~~~~~~~~~~--~~~--~~~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                       ..+.+||..+.+-.. +.. ......+  .++  .-++..++.|+. ...+.+||....
T Consensus       320 -g~i~vwd~~~~~~~~~~~~-~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~i~iW~~~~~  376 (380)
T 3iz6_a          320 -GDCYVWDTLLAEMVLNLGT-LQNSHEGRISCLGLSSDGSALCTGSW-DKNLKIWAFSGH  376 (380)
T ss_dssp             -SCEEEEETTTCCEEEEECC-SCSSCCCCCCEEEECSSSSEEEEECT-TSCEEEEECCSS
T ss_pred             -CCEEEEECCCCceEEEEec-ccCCCCCceEEEEECCCCCEEEEeeC-CCCEEEEecCCC
Confidence             368999987765332 211 1111111  122  236777777776 446777776543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=93.87  E-value=1.1  Score=40.51  Aligned_cols=197  Identities=11%  Similarity=-0.073  Sum_probs=93.9

Q ss_pred             eeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEcc-CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145          119 IQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPR-EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS  197 (402)
Q Consensus       119 ~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~  197 (402)
                      ..++.+|+.+.+-..+..-+       .......+.. +++.+++.... ........++++|..++..+.+........
T Consensus       168 ~~l~~~d~~~g~~~~l~~~~-------~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~  239 (388)
T 3pe7_A          168 CRLMRVDLKTGESTVILQEN-------QWLGHPIYRPYDDSTVAFCHEG-PHDLVDARMWLINEDGTNMRKVKTHAEGES  239 (388)
T ss_dssp             EEEEEEETTTCCEEEEEEES-------SCEEEEEEETTEEEEEEEEECS-CTTTSSCSEEEEETTSCCCEESCCCCTTEE
T ss_pred             ceEEEEECCCCceEEeecCC-------ccccccEECCCCCCEEEEEEec-CCCCCcceEEEEeCCCCceEEeeeCCCCcc
Confidence            56888998888766554222       2223344434 45444333221 111235589999998877666654221111


Q ss_pred             ceEEEEE-CCE-EEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCC-----cceeEEEECCE-EEEEccccc--CCc
Q 040145          198 FFASGVI-GGM-IYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNM-----ASYDAAVLDGK-LLVTEGWLW--PFF  267 (402)
Q Consensus       198 ~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~-----~~~~~~~~~g~-ly~~gG~~~--~~~  267 (402)
                      ....... +++ |+......+. . ...++++|+.+++-+.+..++...     .......-+|+ |++.....+  ...
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~-~-~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  317 (388)
T 3pe7_A          240 CTHEFWVPDGSALVYVSYLKGS-P-DRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE  317 (388)
T ss_dssp             EEEEEECTTSSCEEEEEEETTC-C-CEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------C
T ss_pred             cccceECCCCCEEEEEecCCCC-C-cceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence            1122222 443 5444322111 1 235999999998876664443210     00012222333 332210000  001


Q ss_pred             cCCcEEEEeCCCCCeeeccccccC----------CCceeEEEECCEEEEEecc-C-CcEEEEEeCCCCce
Q 040145          268 VSPRGQVYDPSTDNWESMAVGLRE----------GWTGSSVVVYEHLFVVSEL-E-RMKLKVYDPSTDSW  325 (402)
Q Consensus       268 ~~~~~~~yd~~~~~W~~~~~~~~~----------~~~~~~~~~~~~l~~~gg~-~-~~~~~~yd~~~~~W  325 (402)
                      ....++.+|+.+++-..+......          ........-+|+.+++... + ...++.+|.....|
T Consensus       318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~~~~  387 (388)
T 3pe7_A          318 NDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPESVW  387 (388)
T ss_dssp             CCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCGGGG
T ss_pred             CCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECChhcc
Confidence            124789999998876666532210          1111122335654444332 2 45799999887766

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=93.85  E-value=5.7  Score=39.39  Aligned_cols=256  Identities=10%  Similarity=-0.072  Sum_probs=123.6

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      .+.++|..-.........+++.+.....+..+-.................+..+|+.++++.....  .....++++|..
T Consensus        82 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G--~~~~~i~v~d~~  159 (710)
T 2xdw_A           82 KGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASG--SDWVTIKFMKVD  159 (710)
T ss_dssp             ETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETT--CSCEEEEEEETT
T ss_pred             ECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCC--CceEEEEEEECC
Confidence            356666665443333345677776666666542211100000012344455556665555433211  122389999999


Q ss_pred             CCceeecCCCcccccceEEEEE-CC-EEEEEcCCCCC---------CCCCCeeEEEcCCCCcEE--EcCCCCC-CCccee
Q 040145          183 KNRWTVMNKMITARSFFASGVI-GG-MIYVAGGSSAD---------LFELDSAEVLDPVKGNWR--TIASMGT-NMASYD  248 (402)
Q Consensus       183 t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~---------~~~~~~~~~yd~~t~~W~--~~~~~~~-~~~~~~  248 (402)
                      +++...... .... ....+.. ++ .||........         ......+++++..++..+  .+-..+. +.....
T Consensus       160 tg~~~~~~~-~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~  237 (710)
T 2xdw_A          160 GAKELPDVL-ERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG  237 (710)
T ss_dssp             TTEEEEEEE-EEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             CCCCCcccc-cCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence            998765321 1111 1223333 44 44444322110         011345888888877632  2212111 222222


Q ss_pred             EE-EECCEEEEEcccccCCccCCcEEEEeCCC------C--CeeeccccccCCCceeEEEECCEEEEEeccC--CcEEEE
Q 040145          249 AA-VLDGKLLVTEGWLWPFFVSPRGQVYDPST------D--NWESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKV  317 (402)
Q Consensus       249 ~~-~~~g~ly~~gG~~~~~~~~~~~~~yd~~~------~--~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~  317 (402)
                      .. .-+|+..++....... ..+.++.+|..+      .  .+..+..... ........-++.||+.+..+  ...++.
T Consensus       238 ~~~SpDg~~l~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~  315 (710)
T 2xdw_A          238 AELSDDGRYVLLSIREGCD-PVNRLWYCDLQQESNGITGILKWVKLIDNFE-GEYDYVTNEGTVFTFKTNRHSPNYRLIN  315 (710)
T ss_dssp             EEECTTSCEEEEEEECSSS-SCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-SCEEEEEEETTEEEEEECTTCTTCEEEE
T ss_pred             EEEcCCCCEEEEEEEccCC-CccEEEEEECcccccccCCccceEEeeCCCC-cEEEEEeccCCEEEEEECCCCCCCEEEE
Confidence            22 2266644444322111 135789999876      4  5776654221 11111123467788776543  457999


Q ss_pred             EeCCCC---ceeecCCCCCCccccCCeEEEEe-CCEEEEEecCceeeeEEEEeccc
Q 040145          318 YDPSTD---SWETIEGPPLPEQICKPFAVNAC-DCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       318 yd~~~~---~W~~~~~~~~p~~~~~~~~~~~~-~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      +|..+.   .|+.+.. ..+.  .....+... ++.|++....+.  ...++.++.
T Consensus       316 ~d~~~~~~~~~~~l~~-~~~~--~~~~~~~~~~~~~lv~~~~~~g--~~~l~~~~~  366 (710)
T 2xdw_A          316 IDFTDPEESKWKVLVP-EHEK--DVLEWVACVRSNFLVLCYLHDV--KNTLQLHDL  366 (710)
T ss_dssp             EETTSCCGGGCEEEEC-CCSS--CEEEEEEEETTTEEEEEEEETT--EEEEEEEET
T ss_pred             EeCCCCCcccceeccC-CCCC--CeEEEEEEEcCCEEEEEEEECC--EEEEEEEEC
Confidence            999875   5887752 1111  111234444 777777765432  244666664

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=93.71  E-value=3.4  Score=36.42  Aligned_cols=143  Identities=11%  Similarity=-0.032  Sum_probs=77.0

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEE-EECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASG-VIGGMIYVAGGSSADLFELDSAEVLDPVKGNW  234 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  234 (402)
                      ++.+|+++..       ...+++||+.+++.+.... +  ....+++ .-++++|+...        ..+.+||+.+++.
T Consensus        60 ~~~l~~~d~~-------~~~i~~~d~~~~~~~~~~~-~--~~v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~~  121 (326)
T 2ghs_A           60 SGTAWWFNIL-------ERELHELHLASGRKTVHAL-P--FMGSALAKISDSKQLIASD--------DGLFLRDTATGVL  121 (326)
T ss_dssp             TTEEEEEEGG-------GTEEEEEETTTTEEEEEEC-S--SCEEEEEEEETTEEEEEET--------TEEEEEETTTCCE
T ss_pred             CCEEEEEECC-------CCEEEEEECCCCcEEEEEC-C--CcceEEEEeCCCeEEEEEC--------CCEEEEECCCCcE
Confidence            4688887644       2379999999886554321 1  1122232 24678777642        3589999999888


Q ss_pred             EEcCCCCCC--CcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEE-ECC-EEEEEe
Q 040145          235 RTIASMGTN--MASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV-VYE-HLFVVS  308 (402)
Q Consensus       235 ~~~~~~~~~--~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~-~l~~~g  308 (402)
                      +.+...+..  ........+  +|++|+.............++.||  +++...+.....  .....+. -++ .+|+..
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~--~~~~i~~s~dg~~lyv~~  197 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS--IPNSICFSPDGTTGYFVD  197 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES--SEEEEEECTTSCEEEEEE
T ss_pred             EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc--ccCCeEEcCCCCEEEEEE
Confidence            766443221  112222233  678877432111111123688888  455544422111  1111222 245 467664


Q ss_pred             ccCCcEEEEEeCC
Q 040145          309 ELERMKLKVYDPS  321 (402)
Q Consensus       309 g~~~~~~~~yd~~  321 (402)
                      . ....+++||.+
T Consensus       198 ~-~~~~I~~~d~~  209 (326)
T 2ghs_A          198 T-KVNRLMRVPLD  209 (326)
T ss_dssp             T-TTCEEEEEEBC
T ss_pred             C-CCCEEEEEEcc
Confidence            3 35689999975

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=93.54  E-value=3.6  Score=39.55  Aligned_cols=171  Identities=15%  Similarity=0.073  Sum_probs=87.4

Q ss_pred             eEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--
Q 040145          175 LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--  252 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--  252 (402)
                      .+.+||..+++-+.+...+.   ......-+++.+++++.+...  ...++++|..++.++.+......   ......  
T Consensus       133 ~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g~~~~l~~~~~~---~~~~~~Sp  204 (582)
T 3o4h_A          133 RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSGGLRVFDSGEGS---FSSASISP  204 (582)
T ss_dssp             CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT--EEEEEEEETTTCCCEEECCSSCE---EEEEEECT
T ss_pred             CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC--CeEEEEEcCCCCCceEeecCCCc---cccceECC
Confidence            34588998887666543222   122222355544444432211  25699999999988876432221   122222  


Q ss_pred             CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE--------EEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS--------VVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~--------~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      +|+.++.+...+    ...++.+|+.+++...+.. .........        ..-+|++++.+.. ...+.+|+.  .+
T Consensus       205 DG~~l~~~~~~~----~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~~~~~~~-~g~~~l~~~--g~  276 (582)
T 3o4h_A          205 GMKVTAGLETAR----EARLVTVDPRDGSVEDLEL-PSKDFSSYRPTAITWLGYLPDGRLAVVARR-EGRSAVFID--GE  276 (582)
T ss_dssp             TSCEEEEEECSS----CEEEEEECTTTCCEEECCC-SCSHHHHHCCSEEEEEEECTTSCEEEEEEE-TTEEEEEET--TE
T ss_pred             CCCEEEEccCCC----eeEEEEEcCCCCcEEEccC-CCcChhhhhhccccceeEcCCCcEEEEEEc-CCcEEEEEE--CC
Confidence            676555332211    1368999999888763221 111001111        2236677766554 446777877  43


Q ss_pred             eeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145          325 WETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       325 W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      ...     .+.  ....++...++++++.++.... ..+++.+|.
T Consensus       277 ~~~-----~~~--~~v~~~~~sdg~~l~~~s~~~~-p~~l~~~d~  313 (582)
T 3o4h_A          277 RVE-----APQ--GNHGRVVLWRGKLVTSHTSLST-PPRIVSLPS  313 (582)
T ss_dssp             EEC-----CCS--SEEEEEEEETTEEEEEEEETTE-EEEEEEETT
T ss_pred             eec-----cCC--CceEEEEecCCEEEEEEcCCCC-CCeEEEEcC
Confidence            322     111  1111233238888777664433 356676664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=93.52  E-value=5.9  Score=38.52  Aligned_cols=118  Identities=21%  Similarity=0.256  Sum_probs=70.2

Q ss_pred             eEEEEECCEEEEEcCCCCCCCCCCeeEEEcC-CCCc--EEEcCCCCCC-----Cc---ceeEEE--ECCE----EEEEcc
Q 040145          199 FASGVIGGMIYVAGGSSADLFELDSAEVLDP-VKGN--WRTIASMGTN-----MA---SYDAAV--LDGK----LLVTEG  261 (402)
Q Consensus       199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~-~t~~--W~~~~~~~~~-----~~---~~~~~~--~~g~----ly~~gG  261 (402)
                      .+.++.++.||+....      ...++.+|. .|++  |+.-......     .+   ....++  .+++    ||+...
T Consensus        56 ~tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~  129 (599)
T 1w6s_A           56 GAPLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL  129 (599)
T ss_dssp             SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred             eccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence            3445679999998753      246899999 7775  9875433221     11   112344  5777    887543


Q ss_pred             cccCCccCCcEEEEeCCCCC--eeeccccccC--CCceeEEEECCEEEEEecc----CCcEEEEEeCCCCc--eeecC
Q 040145          262 WLWPFFVSPRGQVYDPSTDN--WESMAVGLRE--GWTGSSVVVYEHLFVVSEL----ERMKLKVYDPSTDS--WETIE  329 (402)
Q Consensus       262 ~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--~~~~~~~~~~~~l~~~gg~----~~~~~~~yd~~~~~--W~~~~  329 (402)
                      .       ..++++|.++++  |+.-......  ......++.++++|+-.+.    ....+..||.++.+  |+.-.
T Consensus       130 d-------g~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          130 D-------GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             T-------SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             C-------CEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            1       368999998875  8753221111  1122225678888764321    13589999998764  87543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=93.47  E-value=0.076  Score=48.46  Aligned_cols=139  Identities=14%  Similarity=0.082  Sum_probs=58.0

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC-
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKG-  232 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-  232 (402)
                      ++.||+.+.        ...++.+|..|++  |+.-.    .......+..++.+|+.++.      ...++++|.+++ 
T Consensus         9 ~~~v~~gs~--------dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~~g~~~v~~s~------dg~l~a~d~~tG~   70 (369)
T 2hz6_A            9 ETLLFVSTL--------DGSLHAVSKRTGSIKWTLKE----DPVLQVPTHVEEPAFLPDPN------DGSLYTLGSKNNE   70 (369)
T ss_dssp             TTEEEEEET--------TSEEEEEETTTCCEEEEEEC----CCSCCCC-----CCEEECTT------TCCEEEC-----C
T ss_pred             CCEEEEEcC--------CCEEEEEECCCCCEEEEecC----CCceecceEcCCCEEEEeCC------CCEEEEEECCCCc
Confidence            667776543        1279999999885  76533    11112223456678887654      345889998765 


Q ss_pred             -cEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCC--eeeccccccCCCceeEEEECCEEEEEe
Q 040145          233 -NWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WESMAVGLREGWTGSSVVVYEHLFVVS  308 (402)
Q Consensus       233 -~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~~~g  308 (402)
                       .|+.-...+... ..+.+. .++.||+ |+.+      ..++++|+.+++  |+.-... . ..   .+-.++.+|+ |
T Consensus        71 ~~w~~~~~~~~~~-~~sp~~~~~~~v~~-g~~d------g~v~a~D~~tG~~~w~~~~~~-~-~~---~~p~~~~v~~-~  136 (369)
T 2hz6_A           71 GLTKLPFTIPELV-QASPCRSSDGILYM-GKKQ------DIWYVIDLLTGEKQQTLSSAF-A-DS---LSPSTSLLYL-G  136 (369)
T ss_dssp             CSEECSCCHHHHH-TTCSCC-----CCC-CEEE------EEEEEECCC---------------------------EEE-E
T ss_pred             eeeeeeccCcccc-ccCceEecCCEEEE-EeCC------CEEEEEECCCCcEEEEecCCC-c-cc---ccccCCEEEE-E
Confidence             465321111000 011111 3555554 3321      268999998764  7543221 0 00   1124455554 4


Q ss_pred             ccCCcEEEEEeCCCCc--eee
Q 040145          309 ELERMKLKVYDPSTDS--WET  327 (402)
Q Consensus       309 g~~~~~~~~yd~~~~~--W~~  327 (402)
                      +. ...+..||+++.+  |+.
T Consensus       137 ~~-dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A          137 RT-EYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             EE-EEEEECCCSSSSSCCCEE
T ss_pred             ec-CCEEEEEECCCCCEEEeE
Confidence            33 3478899987654  764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=93.45  E-value=3.7  Score=35.95  Aligned_cols=205  Identities=8%  Similarity=0.058  Sum_probs=96.3

Q ss_pred             eEEEeecCCCcEE-eCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc
Q 040145          120 QWQVLDLTHYCWH-TIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF  198 (402)
Q Consensus       120 ~~~~~d~~~~~W~-~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  198 (402)
                      .+.+||..+++-. .+..-.       ....++.+..++.+++.|+.+       ..+.+||.....-..+..-  ...-
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~s~s~D-------~~i~vwd~~~~~~~~~~~h--~~~v  151 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHK-------SDVMSVDIDKKASMIISGSRD-------KTIKVWTIKGQCLATLLGH--NDWV  151 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCS-------SCEEEEEECTTSCEEEEEETT-------SCEEEEETTSCEEEEECCC--SSCE
T ss_pred             EEEEEECCCCCeeEEEccCC-------CcEEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCeEEEEecc--CCcE
Confidence            3778888877532 221111       223344444567777887763       2688888865433222211  1111


Q ss_pred             eEEEEE-------CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccC
Q 040145          199 FASGVI-------GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVS  269 (402)
Q Consensus       199 ~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~  269 (402)
                      ..+...       ++..++.|+.      -..+.+||..+..-..  .+.........+.+  ++++++.|+.+      
T Consensus       152 ~~~~~~~~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~sp~g~~l~s~~~d------  217 (319)
T 3frx_A          152 SQVRVVPNEKADDDSVTIISAGN------DKMVKAWNLNQFQIEA--DFIGHNSNINTLTASPDGTLIASAGKD------  217 (319)
T ss_dssp             EEEEECCC------CCEEEEEET------TSCEEEEETTTTEEEE--EECCCCSCEEEEEECTTSSEEEEEETT------
T ss_pred             EEEEEccCCCCCCCccEEEEEeC------CCEEEEEECCcchhhe--eecCCCCcEEEEEEcCCCCEEEEEeCC------
Confidence            112221       2335566655      3457888887754322  11111122222222  67777777753      


Q ss_pred             CcEEEEeCCCCCeeeccccccCCCceeEE-EECCEEEEEeccCCcEEEEEeCCCCc-eeecCCCCCC---cccc-CCeEE
Q 040145          270 PRGQVYDPSTDNWESMAVGLREGWTGSSV-VVYEHLFVVSELERMKLKVYDPSTDS-WETIEGPPLP---EQIC-KPFAV  343 (402)
Q Consensus       270 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~l~~~gg~~~~~~~~yd~~~~~-W~~~~~~~~p---~~~~-~~~~~  343 (402)
                      ..+.+||+.+.+=...-. .. ......+ .-++.+++.+..  ..+.+|+..... ...+.. ...   .... ...++
T Consensus       218 g~i~iwd~~~~~~~~~~~-~~-~~v~~~~~sp~~~~la~~~~--~~i~v~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~  292 (319)
T 3frx_A          218 GEIMLWNLAAKKAMYTLS-AQ-DEVFSLAFSPNRYWLAAATA--TGIKVFSLDPQYLVDDLRP-EFAGYSKAAEPHAVSL  292 (319)
T ss_dssp             CEEEEEETTTTEEEEEEE-CC-SCEEEEEECSSSSEEEEEET--TEEEEEEETTEEEEEEECC-CCTTCCGGGCCCEEEE
T ss_pred             CeEEEEECCCCcEEEEec-CC-CcEEEEEEcCCCCEEEEEcC--CCcEEEEeCcCeeeeccCc-cccccccCcCcceeEE
Confidence            368899987754211111 11 1111112 225555555443  346666665432 222221 111   0001 11122


Q ss_pred             -EEeCCEEEEEecCcee
Q 040145          344 -NACDCRVYVVGRNLHV  359 (402)
Q Consensus       344 -~~~~~~i~v~GG~~~~  359 (402)
                       ...+|+.++.|+.++.
T Consensus       293 ~~spdg~~l~sg~~Dg~  309 (319)
T 3frx_A          293 AWSADGQTLFAGYTDNV  309 (319)
T ss_dssp             EECTTSSEEEEEETTSC
T ss_pred             EECCCCCEEEEeecCce
Confidence             2357888888887654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=93.41  E-value=3.7  Score=35.91  Aligned_cols=149  Identities=6%  Similarity=0.056  Sum_probs=75.9

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-eEEEEE-CCEEEEEcCCCCCCCCCCeeEE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF-FASGVI-GGMIYVAGGSSADLFELDSAEV  226 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~  226 (402)
                      ..+.+..++..++.|+.+       ..+.+||..+++-..  .+...... .++... ++.+++.|+.      -..+.+
T Consensus        69 ~~~~~s~dg~~l~s~s~D-------~~v~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~------D~~i~v  133 (319)
T 3frx_A           69 QDCTLTADGAYALSASWD-------KTLRLWDVATGETYQ--RFVGHKSDVMSVDIDKKASMIISGSR------DKTIKV  133 (319)
T ss_dssp             EEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEE--EEECCSSCEEEEEECTTSCEEEEEET------TSCEEE
T ss_pred             EEEEECCCCCEEEEEeCC-------CEEEEEECCCCCeeE--EEccCCCcEEEEEEcCCCCEEEEEeC------CCeEEE
Confidence            344454567777777763       279999998875321  11111111 122222 4566777765      345778


Q ss_pred             EcCCCCcEEEcCCCCCCCcceeEEEE--------CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEE
Q 040145          227 LDPVKGNWRTIASMGTNMASYDAAVL--------DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSV  298 (402)
Q Consensus       227 yd~~t~~W~~~~~~~~~~~~~~~~~~--------~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~  298 (402)
                      ||.....-..+....   .....+.+        ++.+++.|+.+      ..+..||+.+.+-...-  ......-..+
T Consensus       134 wd~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~--~~h~~~v~~~  202 (319)
T 3frx_A          134 WTIKGQCLATLLGHN---DWVSQVRVVPNEKADDDSVTIISAGND------KMVKAWNLNQFQIEADF--IGHNSNINTL  202 (319)
T ss_dssp             EETTSCEEEEECCCS---SCEEEEEECCC------CCEEEEEETT------SCEEEEETTTTEEEEEE--CCCCSCEEEE
T ss_pred             EECCCCeEEEEeccC---CcEEEEEEccCCCCCCCccEEEEEeCC------CEEEEEECCcchhheee--cCCCCcEEEE
Confidence            888655433322111   11111111        23355555543      36888998765422111  1111111112


Q ss_pred             EE--CCEEEEEeccCCcEEEEEeCCCCc
Q 040145          299 VV--YEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       299 ~~--~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      .+  ++++++.|+. ...+.+||..+.+
T Consensus       203 ~~sp~g~~l~s~~~-dg~i~iwd~~~~~  229 (319)
T 3frx_A          203 TASPDGTLIASAGK-DGEIMLWNLAAKK  229 (319)
T ss_dssp             EECTTSSEEEEEET-TCEEEEEETTTTE
T ss_pred             EEcCCCCEEEEEeC-CCeEEEEECCCCc
Confidence            22  6777777775 4579999998764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=93.10  E-value=2  Score=39.43  Aligned_cols=105  Identities=10%  Similarity=0.019  Sum_probs=56.2

Q ss_pred             CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCe
Q 040145          205 GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNW  282 (402)
Q Consensus       205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W  282 (402)
                      ++.+++.|+.      ...+.+||..+.+-...-..+.......++.+  ++.+++.|+.+      ..+.+||+.+++-
T Consensus       181 ~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~  248 (437)
T 3gre_A          181 EKSLLVALTN------LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR------GIIDIWDIRFNVL  248 (437)
T ss_dssp             SCEEEEEEET------TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT------SCEEEEETTTTEE
T ss_pred             CCCEEEEEeC------CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC------CeEEEEEcCCccE
Confidence            4677777775      45789999988763222111111122223333  67777777754      3689999987543


Q ss_pred             eeccccccCCCceeE-EEE------CCEEEEEeccCCcEEEEEeCCCCc
Q 040145          283 ESMAVGLREGWTGSS-VVV------YEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       283 ~~~~~~~~~~~~~~~-~~~------~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      ...-. ... ..... +..      ++.+++.|+. ...+.+||..+.+
T Consensus       249 ~~~~~-~~~-~~~v~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~  294 (437)
T 3gre_A          249 IRSWS-FGD-HAPITHVEVCQFYGKNSVIVVGGSS-KTFLTIWNFVKGH  294 (437)
T ss_dssp             EEEEB-CTT-CEEEEEEEECTTTCTTEEEEEEEST-TEEEEEEETTTTE
T ss_pred             EEEEe-cCC-CCceEEEEeccccCCCccEEEEEcC-CCcEEEEEcCCCc
Confidence            22111 011 11111 111      3445555544 5679999998664

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=93.09  E-value=5  Score=36.46  Aligned_cols=143  Identities=11%  Similarity=0.032  Sum_probs=78.5

Q ss_pred             eEEEEECCC--CceeecCCCcccccceEEEEE---CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCC---CCCC--
Q 040145          175 LVLKYEMQK--NRWTVMNKMITARSFFASGVI---GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM---GTNM--  244 (402)
Q Consensus       175 ~~~~~d~~t--~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~~--  244 (402)
                      -+++++...  .+|+.+.+.......++++.-   .+.||+.+.....   -..++..+-...+|+.+...   +...  
T Consensus        32 Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~---g~gl~~s~D~G~tW~~~~~~~~~~~~~~~  108 (394)
T 3b7f_A           32 GAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHL---GPTVFRSDDGGGNWTEATRPPAFNKAPEG  108 (394)
T ss_dssp             EEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--C---CEEEEEESSTTSCCEECSBCCCCCCCC--
T ss_pred             ceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCC---CccEEEeCCCCCCceECCccccCCCcccc
Confidence            477888765  689876422222223334433   4678877642110   12567777677889988532   2111  


Q ss_pred             ------cceeEEEE-----CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccc--cC--------------CCceeE
Q 040145          245 ------ASYDAAVL-----DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL--RE--------------GWTGSS  297 (402)
Q Consensus       245 ------~~~~~~~~-----~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~--~~--------------~~~~~~  297 (402)
                            ........     ++.||+.+..       ..+++.+-...+|+.+....  +.              ...-..
T Consensus       109 ~~~~~~~~i~~l~~~~~~~~~~l~~g~~~-------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~  181 (394)
T 3b7f_A          109 ETGRVVDHVFWLTPGHASEPGTWYAGTSP-------QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHS  181 (394)
T ss_dssp             --CCCCCEEEEEEECCTTSTTCEEEEEET-------TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEE
T ss_pred             cccccccceeEEEeCCCCCCCEEEEEecC-------CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeE
Confidence                  01112222     4677775421       25788888888999885311  11              111112


Q ss_pred             EEE----CCEEEEEeccCCcEEEEEeCCCCceeecC
Q 040145          298 VVV----YEHLFVVSELERMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       298 ~~~----~~~l~~~gg~~~~~~~~yd~~~~~W~~~~  329 (402)
                      +.+    .+.||+....  ..+++.+-...+|+.+.
T Consensus       182 i~~d~~~~~~l~vg~~~--ggl~~s~DgG~tW~~~~  215 (394)
T 3b7f_A          182 ILVDPRDPKHLYIGMSS--GGVFESTDAGTDWKPLN  215 (394)
T ss_dssp             EEECTTCTTCEEEEEET--BEEEEESSTTSSCEECC
T ss_pred             EEECCCCCCEEEEEECC--CCEEEECCCCCCceECC
Confidence            333    3578875432  35888888888999875

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=93.07  E-value=4.1  Score=35.46  Aligned_cols=197  Identities=16%  Similarity=0.227  Sum_probs=96.3

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecC-CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLT-HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~-~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      ++.+|+..     ....+++||+. ...|..-...+       . ....+...++.||+...        ...++.||+.
T Consensus       107 ~~~l~v~t-----~~~~l~~~d~~g~~~~~~~~~~~-------~-~~~~~~~~~g~l~vgt~--------~~~l~~~d~~  165 (330)
T 3hxj_A          107 EDILYVTS-----MDGHLYAINTDGTEKWRFKTKKA-------I-YATPIVSEDGTIYVGSN--------DNYLYAINPD  165 (330)
T ss_dssp             TTEEEEEC-----TTSEEEEECTTSCEEEEEECSSC-------C-CSCCEECTTSCEEEECT--------TSEEEEECTT
T ss_pred             CCEEEEEe-----cCCEEEEEcCCCCEEEEEcCCCc-------e-eeeeEEcCCCEEEEEcC--------CCEEEEECCC
Confidence            56666643     12347889987 33465432211       1 11223323667776432        1378999998


Q ss_pred             CCc--eeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCC-CcEEEcCCCCCCCcceeEEEE-CCEEE
Q 040145          183 KNR--WTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVK-GNWRTIASMGTNMASYDAAVL-DGKLL  257 (402)
Q Consensus       183 t~~--W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~~~~~~~-~g~ly  257 (402)
                       ++  |+...+  ... ..+.+. .++.||+..         ..+.+||... ..|+......  . ..+.+.. +|.||
T Consensus       166 -g~~~~~~~~~--~~~-~~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~~~~--~-~~~~~~~~~g~l~  229 (330)
T 3hxj_A          166 -GTEKWRFKTN--DAI-TSAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYAGYW--T-VTRPAISEDGTIY  229 (330)
T ss_dssp             -SCEEEEEECS--SCC-CSCCEECTTCCEEEES---------SSEEEECTTSCEEEEECCSSC--C-CSCCEECTTSCEE
T ss_pred             -CCEeEEEecC--CCc-eeeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEccCCc--c-eeceEECCCCeEE
Confidence             43  554322  111 122233 366777654         3478888432 2466542211  1 1112222 56787


Q ss_pred             EEcccccCCccCCcEEEEeCCCCC-eeeccccccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCC-ceeecCCCCCC
Q 040145          258 VTEGWLWPFFVSPRGQVYDPSTDN-WESMAVGLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTD-SWETIEGPPLP  334 (402)
Q Consensus       258 ~~gG~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~-~W~~~~~~~~p  334 (402)
                      +...       ...+.+||..... |.....   .......+.- ++.||+...  ...+++||+..+ .|..-    ++
T Consensus       230 v~t~-------~~gl~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~v~t~--~ggl~~~d~~g~~~~~~~----~~  293 (330)
T 3hxj_A          230 VTSL-------DGHLYAINPDGTEKWRFKTG---KRIESSPVIGNTDTIYFGSY--DGHLYAINPDGTEKWNFE----TG  293 (330)
T ss_dssp             EEET-------TTEEEEECTTSCEEEEEECS---SCCCSCCEECTTSCEEEECT--TCEEEEECTTSCEEEEEE----CS
T ss_pred             EEcC-------CCeEEEECCCCCEeEEeeCC---CCccccceEcCCCeEEEecC--CCCEEEECCCCcEEEEEE----cC
Confidence            7532       1367888875443 543221   1111122333 678886432  347999998544 35532    22


Q ss_pred             ccccCCeEEEE-eCCEEEEEec
Q 040145          335 EQICKPFAVNA-CDCRVYVVGR  355 (402)
Q Consensus       335 ~~~~~~~~~~~-~~~~i~v~GG  355 (402)
                      .  ....+++. .+|+||+.+.
T Consensus       294 ~--~~~~~~~~d~~g~l~~gt~  313 (330)
T 3hxj_A          294 S--WIIATPVIDENGTIYFGTR  313 (330)
T ss_dssp             S--CCCSCCEECTTCCEEEECT
T ss_pred             C--ccccceEEcCCCEEEEEcC
Confidence            1  12223344 6788888543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=93.03  E-value=4.6  Score=37.07  Aligned_cols=146  Identities=7%  Similarity=-0.003  Sum_probs=70.3

Q ss_pred             CEEEEEeCccCCCCCCCceEEEEECCCC--------ceeecCCCccc-ccceEEEEE-CCE-EEEEcCCCCCCCCCCeeE
Q 040145          157 GTLFVCGGMVSDVDCPLDLVLKYEMQKN--------RWTVMNKMITA-RSFFASGVI-GGM-IYVAGGSSADLFELDSAE  225 (402)
Q Consensus       157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~--------~W~~~~~~~~~-r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~  225 (402)
                      +.+++.|+.+       ..+.+||..+.        ....+..+... ....++... ++. +++.|+.      ...+.
T Consensus       141 ~~~lat~~~d-------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~------dg~i~  207 (430)
T 2xyi_A          141 ACVIATKTPS-------SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD------DHTIC  207 (430)
T ss_dssp             EEEEEEECSS-------SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT------TSCEE
T ss_pred             CcEEEEECCC-------CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC------CCeEE
Confidence            5677777652       26889998752        12221111111 111222332 233 6677765      34588


Q ss_pred             EEcCCCC---cEEE--cCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCC-eeeccccccCCCcee
Q 040145          226 VLDPVKG---NWRT--IASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDN-WESMAVGLREGWTGS  296 (402)
Q Consensus       226 ~yd~~t~---~W~~--~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~  296 (402)
                      +||..+.   .+..  ...+.........+..   ++.+++.++.+      ..+.+||+.+.. ...+.........-.
T Consensus       208 vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          208 LWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD------QKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             EEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             EEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC------CeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            8898763   1211  1111111111222222   45677666643      378999998653 222211011111111


Q ss_pred             EEEE--CC-EEEEEeccCCcEEEEEeCCC
Q 040145          297 SVVV--YE-HLFVVSELERMKLKVYDPST  322 (402)
Q Consensus       297 ~~~~--~~-~l~~~gg~~~~~~~~yd~~~  322 (402)
                      ++.+  ++ .+++.|+. ...+.+||..+
T Consensus       282 ~i~~~p~~~~~l~tg~~-dg~v~vwd~~~  309 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSA-DKTVALWDLRN  309 (430)
T ss_dssp             EEEECSSCTTEEEEEET-TSEEEEEETTC
T ss_pred             EEEeCCCCCCEEEEEeC-CCeEEEEeCCC
Confidence            2233  23 47777776 45799999876

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=92.93  E-value=7.1  Score=37.79  Aligned_cols=113  Identities=15%  Similarity=0.238  Sum_probs=66.4

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCccc---c---cceEEEEECCEEEEEcCCCCCCCCCCeeEEE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMITA---R---SFFASGVIGGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~---r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      ++.||+....        +.++.+|..|++  |+.-...+..   .   ...+.++.+++||+...       ...+..+
T Consensus        68 ~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~l~Al  132 (582)
T 1flg_A           68 DGVIYVTASY--------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DASVVAL  132 (582)
T ss_dssp             TTEEEEEETT--------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTEEEEE
T ss_pred             CCEEEEEcCC--------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCEEEEE
Confidence            8999998653        249999999885  8774433221   1   11344567899988643       3568999


Q ss_pred             cCCCCc--EEEcCCCCCCC--cceeEEEECC------EEEEEcccccCCccCCcEEEEeCCCCC--eee
Q 040145          228 DPVKGN--WRTIASMGTNM--ASYDAAVLDG------KLLVTEGWLWPFFVSPRGQVYDPSTDN--WES  284 (402)
Q Consensus       228 d~~t~~--W~~~~~~~~~~--~~~~~~~~~g------~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~  284 (402)
                      |.+|++  |+.-...+...  ....-++.++      .||+ |...........++.||..+++  |+.
T Consensus       133 D~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~  200 (582)
T 1flg_A          133 NKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             ESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             ECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeec
Confidence            998886  87532211111  1112234555      6665 3221111113478999998765  864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=92.83  E-value=8  Score=38.12  Aligned_cols=152  Identities=9%  Similarity=0.022  Sum_probs=75.4

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCC-cccccc-eEEEEEC-C--EEEEEcCCCCCCCCCCe
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKM-ITARSF-FASGVIG-G--MIYVAGGSSADLFELDS  223 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~-~~~r~~-~~~~~~~-~--~iyv~GG~~~~~~~~~~  223 (402)
                      .++.+..++..++.|+.+       ..+.+||.....-..+... ...+.. .++.... +  ..++.|+.      -..
T Consensus       476 ~~~~~s~~~~~l~s~s~D-------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------d~~  542 (694)
T 3dm0_A          476 LSVAFSLDNRQIVSASRD-------RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW------DKT  542 (694)
T ss_dssp             EEEEECTTSSCEEEEETT-------SCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET------TSC
T ss_pred             EEEEEeCCCCEEEEEeCC-------CEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC------CCe
Confidence            334444466667777652       2688888765432222211 111111 2222222 2  35666665      346


Q ss_pred             eEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-
Q 040145          224 AEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-  300 (402)
Q Consensus       224 ~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-  300 (402)
                      +.+||..+..-...  +.........+.+  ++++++.|+.+      ..+.+||+.+++-...-  .........+.. 
T Consensus       543 v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg~~l~sg~~D------g~i~iwd~~~~~~~~~~--~~~~~v~~~~~sp  612 (694)
T 3dm0_A          543 VKVWNLSNCKLRST--LAGHTGYVSTVAVSPDGSLCASGGKD------GVVLLWDLAEGKKLYSL--EANSVIHALCFSP  612 (694)
T ss_dssp             EEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SBCEEEETTTTEEEECC--BCSSCEEEEEECS
T ss_pred             EEEEECCCCcEEEE--EcCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCceEEEe--cCCCcEEEEEEcC
Confidence            88999887654321  1111122222333  67777777754      36888998876422111  111111112222 


Q ss_pred             CCEEEEEeccCCcEEEEEeCCCCce
Q 040145          301 YEHLFVVSELERMKLKVYDPSTDSW  325 (402)
Q Consensus       301 ~~~l~~~gg~~~~~~~~yd~~~~~W  325 (402)
                      ++.+++. +. ...+.+||..+..-
T Consensus       613 ~~~~l~~-~~-~~~i~iwd~~~~~~  635 (694)
T 3dm0_A          613 NRYWLCA-AT-EHGIKIWDLESKSI  635 (694)
T ss_dssp             SSSEEEE-EE-TTEEEEEETTTTEE
T ss_pred             CCcEEEE-Ec-CCCEEEEECCCCCC
Confidence            4444444 43 34689999987653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=92.81  E-value=5.2  Score=39.51  Aligned_cols=62  Identities=11%  Similarity=-0.180  Sum_probs=33.2

Q ss_pred             CeeEEEcCCCCc-EEEcCCCCCC---CcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeec
Q 040145          222 DSAEVLDPVKGN-WRTIASMGTN---MASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM  285 (402)
Q Consensus       222 ~~~~~yd~~t~~-W~~~~~~~~~---~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~  285 (402)
                      ..+.++|..++. ...+......   ......+..  +|++++.....+.  ....++.+|+.+++...+
T Consensus       228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~i~~~d~~~g~~~~~  295 (723)
T 1xfd_A          228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ--NVSILTLCDATTGVCTKK  295 (723)
T ss_dssp             EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS--CEEEEEEEETTTCCEEEE
T ss_pred             eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC--CeEEEEEEeCCCCcceEE
Confidence            378889988776 2444322111   111122222  7886655433211  123688999988876554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=92.75  E-value=4.6  Score=35.16  Aligned_cols=170  Identities=18%  Similarity=0.280  Sum_probs=85.8

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECC-CCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCC-
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQ-KNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKG-  232 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~-t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~-  232 (402)
                      ++.||+...        ...++.||+. ...|+...+.+   ...+.+.. ++.||+...       ...++.||+... 
T Consensus       107 ~~~l~v~t~--------~~~l~~~d~~g~~~~~~~~~~~---~~~~~~~~~~g~l~vgt~-------~~~l~~~d~~g~~  168 (330)
T 3hxj_A          107 EDILYVTSM--------DGHLYAINTDGTEKWRFKTKKA---IYATPIVSEDGTIYVGSN-------DNYLYAINPDGTE  168 (330)
T ss_dssp             TTEEEEECT--------TSEEEEECTTSCEEEEEECSSC---CCSCCEECTTSCEEEECT-------TSEEEEECTTSCE
T ss_pred             CCEEEEEec--------CCEEEEEcCCCCEEEEEcCCCc---eeeeeEEcCCCEEEEEcC-------CCEEEEECCCCCE
Confidence            788887532        2368999998 22465543211   11222333 567776432       356899999822 


Q ss_pred             cEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCC-CCeeeccccccCCCceeEEEECCEEEEEecc
Q 040145          233 NWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPST-DNWESMAVGLREGWTGSSVVVYEHLFVVSEL  310 (402)
Q Consensus       233 ~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~  310 (402)
                      .|.....  .... ...+. .+|.||+..         ..+++||... ..|......  .........-+|.||+... 
T Consensus       169 ~~~~~~~--~~~~-~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~~~--~~~~~~~~~~~g~l~v~t~-  233 (330)
T 3hxj_A          169 KWRFKTN--DAIT-SAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYAGY--WTVTRPAISEDGTIYVTSL-  233 (330)
T ss_dssp             EEEEECS--SCCC-SCCEECTTCCEEEES---------SSEEEECTTSCEEEEECCSS--CCCSCCEECTTSCEEEEET-
T ss_pred             eEEEecC--CCce-eeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEccCC--cceeceEECCCCeEEEEcC-
Confidence            2654322  1111 12222 367787754         2688999432 246544221  1111112223567877532 


Q ss_pred             CCcEEEEEeCCCCc-eeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145          311 ERMKLKVYDPSTDS-WETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       311 ~~~~~~~yd~~~~~-W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                       ...++.||+.... |..-..  ..   .....+...++.||+....     +.++.||+
T Consensus       234 -~~gl~~~~~~g~~~~~~~~~--~~---~~~~~~~~~~g~l~v~t~~-----ggl~~~d~  282 (330)
T 3hxj_A          234 -DGHLYAINPDGTEKWRFKTG--KR---IESSPVIGNTDTIYFGSYD-----GHLYAINP  282 (330)
T ss_dssp             -TTEEEEECTTSCEEEEEECS--SC---CCSCCEECTTSCEEEECTT-----CEEEEECT
T ss_pred             -CCeEEEECCCCCEeEEeeCC--CC---ccccceEcCCCeEEEecCC-----CCEEEECC
Confidence             3478888876553 543321  11   1111222337788875532     24777875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=92.69  E-value=5.1  Score=35.54  Aligned_cols=237  Identities=11%  Similarity=0.082  Sum_probs=111.1

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+|+...........+..++  ..+....+............-..+++..++.||+..-...  ......+++||+.+
T Consensus        27 ~g~~~v~~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~--~~~~~~i~~~d~~t  102 (343)
T 2qe8_A           27 DGRLFLSLHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ--SKSVPKLVAWDTLN  102 (343)
T ss_dssp             TSCEEEEECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH--HTSCCEEEEEETTT
T ss_pred             CCCEEEEeCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC--cCCCCeEEEEECCC
Confidence            5677776421111114566666  4444444322111100111223344434688999752210  00134799999999


Q ss_pred             Ccee-ec--CCC-ccc-ccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc-EEEcCC---C-CCCC-------
Q 040145          184 NRWT-VM--NKM-ITA-RSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN-WRTIAS---M-GTNM-------  244 (402)
Q Consensus       184 ~~W~-~~--~~~-~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~---~-~~~~-------  244 (402)
                      ++-. .+  +.. ..+ .....+++-  ++.+|+......   ....+.+||+.+++ |+.+..   + +.+.       
T Consensus       103 g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~---~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~  179 (343)
T 2qe8_A          103 NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD---DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGV  179 (343)
T ss_dssp             TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG---GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTE
T ss_pred             CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC---CCCeEEEEECCCCCEEEEecCCCcccccccceeECCE
Confidence            8733 22  211 111 122344444  478998853110   14678999998665 665532   1 1000       


Q ss_pred             ---------------cceeEEEE--CC-EEEEEcccccCCccCCcEEEEeCCC---CC------eeeccccccC-CCcee
Q 040145          245 ---------------ASYDAAVL--DG-KLLVTEGWLWPFFVSPRGQVYDPST---DN------WESMAVGLRE-GWTGS  296 (402)
Q Consensus       245 ---------------~~~~~~~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~---~~------W~~~~~~~~~-~~~~~  296 (402)
                                     .......+  +| .||+....      .+.++.+|...   ..      +..+...-.. .-.+.
T Consensus       180 ~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi  253 (343)
T 2qe8_A          180 PVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH------STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI  253 (343)
T ss_dssp             ECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS------CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred             EEEeccCCCceeceecccceeEeccCCCEEEEEeCC------CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence                           01111222  33 35554221      12566666421   00      1111100000 11122


Q ss_pred             EEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCCEEEEEecCc
Q 040145          297 SVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNL  357 (402)
Q Consensus       297 ~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~  357 (402)
                      ++--+|.||+... ..+.|.+||+++.+...+..  .+ ......++++ .+++|||.....
T Consensus       254 a~d~~G~l~va~~-~~~~V~~~d~~~G~~~~~~~--~~-~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          254 SIDKDHNIYVGDL-AHSAIGVITSADRAYKLLVT--DE-KLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             EECTTCCEEEEEG-GGTEEEEEETTTTEEEEEEE--CG-GGSCEEEEEECTTSCEEEEECCG
T ss_pred             EECCCCCEEEEcc-CCCeEEEEECCCCCEEEEEE--CC-ceecCCeeEECCCCcEEEEeCcc
Confidence            2334688888754 36789999996566666542  22 1233445554 468899998754

>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}

Probab=92.68  E-value=2.5  Score=35.31  Aligned_cols=140  Identities=11%  Similarity=0.083  Sum_probs=76.7

Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEEC--C-------------CCceeecCCCcccccceEEEE--ECCEEEEEcCCCCC
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEM--Q-------------KNRWTVMNKMITARSFFASGV--IGGMIYVAGGSSAD  217 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~--~-------------t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~  217 (402)
                      ..+++|++-|.         .+|+++.  .             +..|..||..+......-++.  .++++|++-|    
T Consensus        12 ~~ge~~fFk~~---------~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg----   78 (225)
T 3oyo_A           12 SEYEVYFFAKN---------KYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG----   78 (225)
T ss_dssp             STTEEEEEETT---------EEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET----
T ss_pred             CCCEEEEEECC---------EEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC----
Confidence            37899999764         5777761  1             223444442222112222332  5789999987    


Q ss_pred             CCCCCeeEEEcCCCC----cEEE----c----CCCCCC--CcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCC
Q 040145          218 LFELDSAEVLDPVKG----NWRT----I----ASMGTN--MASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTD  280 (402)
Q Consensus       218 ~~~~~~~~~yd~~t~----~W~~----~----~~~~~~--~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~  280 (402)
                          +..++||..++    ....    +    +.+|..  .....++..   ++++|+|-|.        ..++||..++
T Consensus        79 ----~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG~--------~yw~~d~~~~  146 (225)
T 3oyo_A           79 ----NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGN--------KYVRIAYDSK  146 (225)
T ss_dssp             ----TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEETT--------EEEEEETTTT
T ss_pred             ----CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeCC--------eEEEEECCCC
Confidence                35788866432    1111    1    223321  112334433   6899999874        6899997766


Q ss_pred             Ceeeccc----ccc-------CCCceeEEE--ECCEEEEEeccCCcEEEEEeCCC
Q 040145          281 NWESMAV----GLR-------EGWTGSSVV--VYEHLFVVSELERMKLKVYDPST  322 (402)
Q Consensus       281 ~W~~~~~----~~~-------~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~  322 (402)
                      +...-+.    ..+       .....++..  .++++|++-|.   ..|+||..+
T Consensus       147 ~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~---~ywr~d~~~  198 (225)
T 3oyo_A          147 QLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ---NYVRIDFTP  198 (225)
T ss_dssp             EEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT---EEEEEECCT
T ss_pred             eecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC---EEEEEeCCc
Confidence            5443111    111       111222333  37999999775   799999983

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=92.55  E-value=6.7  Score=36.58  Aligned_cols=172  Identities=16%  Similarity=0.153  Sum_probs=93.5

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCce---eec----CCCcccccceEEEE------ECCEEEEEcCCCCCCCCCC
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRW---TVM----NKMITARSFFASGV------IGGMIYVAGGSSADLFELD  222 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W---~~~----~~~~~~r~~~~~~~------~~~~iyv~GG~~~~~~~~~  222 (402)
                      ++++|++-|.         .+|+|+-.+-.=   +.+    +.+|. ... ++..      .++++|++-|        +
T Consensus       107 ~g~~yfFkG~---------~yW~~~~~~~~~GYPk~I~~~fpGlp~-~ID-AA~~~~~~~~~~~~~yfFkG--------~  167 (460)
T 1qhu_A          107 HTSVYLIKGD---------KVWVYTSEKNEKVYPKSLQDEFPGIPF-PLD-AAVECHRGECQDEGILFFQG--------N  167 (460)
T ss_dssp             TTEEEEEETT---------EEEEECC-------CEEHHHHSTTCCS-SCC-EEEEECBBTBSSSEEEEEET--------T
T ss_pred             CCcEEEEecc---------EEEEEeCCcccCCCCeEhhhccCCCCC-Cee-EEEECCccCCCCCeEEEEec--------c
Confidence            6899999775         688886432110   111    22332 111 2222      2678888876        3


Q ss_pred             eeEEEcCCCCcEEEc--CCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeee------------ccc-
Q 040145          223 SAEVLDPVKGNWRTI--ASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES------------MAV-  287 (402)
Q Consensus       223 ~~~~yd~~t~~W~~~--~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~------------~~~-  287 (402)
                      ..+.||..+++...-  +.++.   .-++...+|++|+|-|.        ..+.||..+++-..            ++. 
T Consensus       168 ~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~v~~gyPk~is~~w~~c~~~  236 (460)
T 1qhu_A          168 RKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQGN--------QFLRFNPVSGEVPPGYPLDVRDYFLSCPGR  236 (460)
T ss_dssp             EEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEETT--------EEEEECTTTCCCCTTCCEEHHHHTSCCTTC
T ss_pred             cEEEEecccceeecccCCCCCc---cchheeeCCceEEEECC--------EEEEEcCccCcccCCCCcchhhcccCCCCC
Confidence            578999988765432  22332   23455568999999884        67888876553221            110 


Q ss_pred             c------------------ccCCCceeEEE-ECCEEEEEeccCCcEEEEEeCCCCceee--cCC--CCCCccccCCeEEE
Q 040145          288 G------------------LREGWTGSSVV-VYEHLFVVSELERMKLKVYDPSTDSWET--IEG--PPLPEQICKPFAVN  344 (402)
Q Consensus       288 ~------------------~~~~~~~~~~~-~~~~l~~~gg~~~~~~~~yd~~~~~W~~--~~~--~~~p~~~~~~~~~~  344 (402)
                      .                  .+.....+... .+|++|.|-|.   ..|++|...+.+..  |..  ..+|.   .--++.
T Consensus       237 g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~---~yWR~~~~~~~~~p~~Is~~WpglP~---~IDAAf  310 (460)
T 1qhu_A          237 GHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS---HYWRLDTNRDGWHSWPIAHQWPQGPS---TVDAAF  310 (460)
T ss_dssp             CSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT---EEEECTTGGGCCCCEEGGGTCTTSCS---SCSEEE
T ss_pred             CCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC---EEEEEecCCCCcCccchhhhccCCCC---CCcEEE
Confidence            0                  00011222223 47899999775   68888876543221  211  02332   122444


Q ss_pred             EeCCEEEEEecCceeeeEEEEeccc
Q 040145          345 ACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       345 ~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      ..++++|++-|.      .+|+|+.
T Consensus       311 ~~~~~~yfFkG~------~yw~f~~  329 (460)
T 1qhu_A          311 SWEDKLYLIQDT------KVYVFLT  329 (460)
T ss_dssp             EETTEEEEEETT------EEEEEEC
T ss_pred             EECCeEEEEeCC------EEEEEeC
Confidence            558899999884      3555553

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=92.55  E-value=1.1  Score=41.29  Aligned_cols=143  Identities=8%  Similarity=-0.009  Sum_probs=69.3

Q ss_pred             EEEEeCccCCCCCCCceEEEEECCCCc---eeecC--CCc-ccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145          159 LFVCGGMVSDVDCPLDLVLKYEMQKNR---WTVMN--KMI-TARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPV  230 (402)
Q Consensus       159 i~v~GG~~~~~~~~~~~~~~~d~~t~~---W~~~~--~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~  230 (402)
                      +++.|+.+       ..+.+||..++.   +...+  .+. ....-..++..  ++.+++.|+.      ...+.+||..
T Consensus       196 ~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~------dg~i~i~d~~  262 (430)
T 2xyi_A          196 YLLSASDD-------HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD------DQKLMIWDTR  262 (430)
T ss_dssp             EEEEECTT-------SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET------TSEEEEEETT
T ss_pred             eEEEEeCC-------CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC------CCeEEEEECC
Confidence            77777652       268899988732   21111  111 11112233332  4566777665      4678899998


Q ss_pred             CCc-EEEcCCCCCCCcceeEEEE--CC-EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC-E
Q 040145          231 KGN-WRTIASMGTNMASYDAAVL--DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE-H  303 (402)
Q Consensus       231 t~~-W~~~~~~~~~~~~~~~~~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~  303 (402)
                      +.. ...+..+.........+.+  ++ .+++.|+.+      ..+.+||..+.. ..+.........-..+.+  ++ .
T Consensus       263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d------g~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~  335 (430)
T 2xyi_A          263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD------KTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNET  335 (430)
T ss_dssp             CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTT
T ss_pred             CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC------CeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCC
Confidence            652 1111111111122223333  34 377777753      368899987632 111110011111112233  33 5


Q ss_pred             EEEEeccCCcEEEEEeCCC
Q 040145          304 LFVVSELERMKLKVYDPST  322 (402)
Q Consensus       304 l~~~gg~~~~~~~~yd~~~  322 (402)
                      +++.|+. ...+.+||...
T Consensus       336 ~l~s~~~-d~~i~iwd~~~  353 (430)
T 2xyi_A          336 ILASSGT-DRRLHVWDLSK  353 (430)
T ss_dssp             EEEEEET-TSCCEEEEGGG
T ss_pred             EEEEEeC-CCcEEEEeCCC
Confidence            6777665 45688888865

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=92.28  E-value=5.5  Score=34.96  Aligned_cols=183  Identities=9%  Similarity=-0.072  Sum_probs=91.1

Q ss_pred             ceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc
Q 040145          118 KIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS  197 (402)
Q Consensus       118 ~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~  197 (402)
                      ...++++|..+..-..+   .       . ........+|+.+++.....+  .....++++|..+++.+.+...+.   
T Consensus        42 ~~~l~~~d~~~~~~~~l---~-------~-~~~~~~SpDg~~la~~~~~~~--~~~~~l~~~~~~~g~~~~l~~~~~---  105 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI---E-------N-ATMPRISPDGKKIAFMRANEE--KKVSEIWVADLETLSSKKILEAKN---  105 (347)
T ss_dssp             EEEEEEEETTTCCEEEE---E-------S-CEEEEECTTSSEEEEEEEETT--TTEEEEEEEETTTTEEEEEEEESE---
T ss_pred             cceEEEEeCCCCceEEc---c-------c-CCCeEECCCCCEEEEEEeccC--CCcceEEEEECCCCceEEEEcCCC---
Confidence            44678888887766555   1       1 122333335543333322111  124479999999887766543322   


Q ss_pred             ceEEEEE-CC-EEEEEcCCC-----------------CCC---CCCCeeEEEcCCCCcE-EEcCCCCCCCcceeEEEE-C
Q 040145          198 FFASGVI-GG-MIYVAGGSS-----------------ADL---FELDSAEVLDPVKGNW-RTIASMGTNMASYDAAVL-D  253 (402)
Q Consensus       198 ~~~~~~~-~~-~iyv~GG~~-----------------~~~---~~~~~~~~yd~~t~~W-~~~~~~~~~~~~~~~~~~-~  253 (402)
                      ....... ++ .|++.....                 +.+   .....++++|..++.. +.+.. +   .....+.. +
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spd  181 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRD  181 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETT
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCC
Confidence            2222222 44 454443210                 000   0135688999998877 55544 2   22222233 5


Q ss_pred             CEEEEEcccccCCc--c-CCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC-------CcEEEEEeCCCC
Q 040145          254 GKLLVTEGWLWPFF--V-SPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE-------RMKLKVYDPSTD  323 (402)
Q Consensus       254 g~ly~~gG~~~~~~--~-~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~-------~~~~~~yd~~~~  323 (402)
                      | +++.+.......  . ...++.+|  ++++..+...   .... ...-+|+.+++.+..       ...++.+|  +.
T Consensus       182 g-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~~~~-~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~  252 (347)
T 2gop_A          182 K-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK---VSFY-AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK  252 (347)
T ss_dssp             E-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE---ESEE-EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS
T ss_pred             e-EEEEEecccccccccccccEEEeC--CCceEEeccC---ccee-eECCCCCEEEEEEccccCCccccceEEEEC--CC
Confidence            6 655554321101  1 23678888  6666666542   1111 124466544443322       35799999  56


Q ss_pred             ceeecC
Q 040145          324 SWETIE  329 (402)
Q Consensus       324 ~W~~~~  329 (402)
                      ++..+.
T Consensus       253 ~~~~l~  258 (347)
T 2gop_A          253 EVMGIL  258 (347)
T ss_dssp             CEEESS
T ss_pred             ceEecc
Confidence            666654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=91.95  E-value=5.7  Score=34.39  Aligned_cols=146  Identities=10%  Similarity=0.092  Sum_probs=69.0

Q ss_pred             CEEEEEeCccCCCCCCCceEEEEECCCCc-------eeecCCCcccccc-eEEEEE-C--CEEEEEcCCCCCCCCCCeeE
Q 040145          157 GTLFVCGGMVSDVDCPLDLVLKYEMQKNR-------WTVMNKMITARSF-FASGVI-G--GMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       157 ~~i~v~GG~~~~~~~~~~~~~~~d~~t~~-------W~~~~~~~~~r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~~  225 (402)
                      +.+++.|+.+       ..+.+||..++.       |+.+..+...... ..++.. +  +.+++.|+.      ...+.
T Consensus        71 ~~~l~s~~~d-------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~v~  137 (351)
T 3f3f_A           71 GRIIASASYD-------KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN------DGILR  137 (351)
T ss_dssp             CSEEEEEETT-------SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET------TCEEE
T ss_pred             CCEEEEEcCC-------CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC------CCcEE
Confidence            6777777763       268888887652       2332222211222 223332 2  556666664      45688


Q ss_pred             EEcCCCCc----EEEc---C--CC-CCCC-cceeEEEE-----CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccc
Q 040145          226 VLDPVKGN----WRTI---A--SM-GTNM-ASYDAAVL-----DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL  289 (402)
Q Consensus       226 ~yd~~t~~----W~~~---~--~~-~~~~-~~~~~~~~-----~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~  289 (402)
                      +||..+..    |...   .  .. +... ........     ++.+++.|+.+      ..+..++...+....+....
T Consensus       138 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~  211 (351)
T 3f3f_A          138 LYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE------QAIIYQRGKDGKLHVAAKLP  211 (351)
T ss_dssp             EEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT------EEEEEEECTTSCEEEEEECC
T ss_pred             EecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC------CcEEEEccCCCceeeeeecC
Confidence            89987653    2211   1  11 1111 11112222     26666766643      13455555566554433211


Q ss_pred             cCCCceeEEEE--CC----EEEEEeccCCcEEEEEeCCC
Q 040145          290 REGWTGSSVVV--YE----HLFVVSELERMKLKVYDPST  322 (402)
Q Consensus       290 ~~~~~~~~~~~--~~----~l~~~gg~~~~~~~~yd~~~  322 (402)
                      .....-..+.+  ++    .+++.|+. ...+.+||..+
T Consensus       212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~-dg~i~iwd~~~  249 (351)
T 3f3f_A          212 GHKSLIRSISWAPSIGRWYQLIATGCK-DGRIRIFKITE  249 (351)
T ss_dssp             CCCSCEEEEEECCCSSCSSEEEEEEET-TSCEEEEEEEE
T ss_pred             CCCcceeEEEECCCCCCcceEEEEEcC-CCeEEEEeCCC
Confidence            11111112222  33    66777665 44677777754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.83  E-value=8  Score=38.65  Aligned_cols=142  Identities=11%  Similarity=0.065  Sum_probs=77.7

Q ss_pred             EEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCC--CcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEc
Q 040145          152 SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK--MITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLD  228 (402)
Q Consensus       152 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~--~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd  228 (402)
                      ....++.|++.+|..       .-+++||+.+++++....  +.......++.. .++.|++..        ...+.+||
T Consensus       478 ~~d~~g~lWi~~~t~-------~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt--------~~Gl~~~~  542 (758)
T 3ott_A          478 IPDNEGNVWVLLYNN-------KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF--------HGGVMRIN  542 (758)
T ss_dssp             EECTTSCEEEEETTC-------SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE--------TTEEEEEC
T ss_pred             EEcCCCCEEEEccCC-------CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe--------cCceEEEe
Confidence            333467899866652       258999999998887632  111111112222 256777643        23588999


Q ss_pred             CCCCcEEEcC--CCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEE
Q 040145          229 PVKGNWRTIA--SMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHL  304 (402)
Q Consensus       229 ~~t~~W~~~~--~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l  304 (402)
                      +.++.++...  .++.. ...+...-+|.|++...        +.+.+||+++.+......  +......++..  +|.|
T Consensus       543 ~~~~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t~--------~Gl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~G~l  611 (758)
T 3ott_A          543 PKDESQQSISFGSFSNN-EILSMTCVKNSIWVSTT--------NGLWIIDRKTMDARQQNM--TNKRFTSLLFDPKEDCV  611 (758)
T ss_dssp             C--CCCCBCCCCC---C-CEEEEEEETTEEEEEES--------SCEEEEETTTCCEEEC----CCCCCSEEEEETTTTEE
T ss_pred             cCCCceEEecccCCCcc-ceEEEEECCCCEEEECC--------CCeEEEcCCCceeEEecC--CCCceeeeEEECCCCcE
Confidence            9988876552  23321 12222334788877543        368999999988765432  22222223322  6777


Q ss_pred             EEEeccCCcEEEEEeCCC
Q 040145          305 FVVSELERMKLKVYDPST  322 (402)
Q Consensus       305 ~~~gg~~~~~~~~yd~~~  322 (402)
                      |+ ||..  .+..|||+.
T Consensus       612 ~f-G~~~--Gl~~f~p~~  626 (758)
T 3ott_A          612 YL-GGAD--GFGISHSNL  626 (758)
T ss_dssp             EE-ECBS--EEEEEEC--
T ss_pred             EE-ecCC--ceEEEChhh
Confidence            64 6643  677888864

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=91.82  E-value=4.4  Score=32.89  Aligned_cols=142  Identities=16%  Similarity=0.185  Sum_probs=76.1

Q ss_pred             EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC--cEE--Ec----CCCCCCCcceeEEEE---CCEEEEEcccccCCcc
Q 040145          200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKG--NWR--TI----ASMGTNMASYDAAVL---DGKLLVTEGWLWPFFV  268 (402)
Q Consensus       200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~--~~----~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~  268 (402)
                      +++.+++++|++-|.        .++.|+....  ...  .+    +.+|.   ...++..   ++++|++-|.      
T Consensus        11 Ai~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~---~IDAa~~~~~~~~~yfFkG~------   73 (195)
T 1itv_A           11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPR---KLDSVFEEPLSKKLFFFSGR------   73 (195)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCS---SCSEEEECTTTCCEEEEETT------
T ss_pred             EEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCC---CccEEEEECCCCeEEEEeCC------
Confidence            345578999999763        4666666542  211  12    23443   2233332   6889999874      


Q ss_pred             CCcEEEEeCCCCCe-eeccc-cccC--CCceeEE-EECCEEEEEeccCCcEEEEEeCCCCceee-----cCC--CCCCcc
Q 040145          269 SPRGQVYDPSTDNW-ESMAV-GLRE--GWTGSSV-VVYEHLFVVSELERMKLKVYDPSTDSWET-----IEG--PPLPEQ  336 (402)
Q Consensus       269 ~~~~~~yd~~~~~W-~~~~~-~~~~--~~~~~~~-~~~~~l~~~gg~~~~~~~~yd~~~~~W~~-----~~~--~~~p~~  336 (402)
                        ..++|+..+..- ..+.. .+|.  ....++. ..++++|+|-|.   ..|+||..+++=..     +..  ..+|. 
T Consensus        74 --~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~---~ywr~d~~~~~~~~gyPr~i~~~w~Gvp~-  147 (195)
T 1itv_A           74 --QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR---RLWRFDVKAQMVDPRSASEVDRMFPGVPL-  147 (195)
T ss_dssp             --EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT---EEEEEETTTTEECGGGCEEHHHHSTTSCS-
T ss_pred             --EEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC---EEEEEeCCcccccCCCccChhhcCCCCCC-
Confidence              577887543111 01111 1111  1122222 237899999664   79999987653110     100  01231 


Q ss_pred             ccCCeEEEEeCCEEEEEecCceeeeEEEEecccccc
Q 040145          337 ICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       337 ~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                       .. -++...+|.+|++-|.      ..+.|++...
T Consensus       148 -~i-daa~~~~g~~Yffkg~------~y~~~~~~~~  175 (195)
T 1itv_A          148 -DT-HDVFQFREKAYFCQDR------FYWRVSSRSE  175 (195)
T ss_dssp             -SC-SEEEEETTEEEEEETT------EEEEEECCTT
T ss_pred             -CC-CEEEEeCCeEEEEeCC------EEEEEECCcc
Confidence             12 2455567999999884      4677775443

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=91.67  E-value=4.8  Score=33.02  Aligned_cols=146  Identities=13%  Similarity=0.118  Sum_probs=80.6

Q ss_pred             CceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCcee--ec----CCCcccccceEEEEE--CCEEEEEcCCCCCC
Q 040145          147 GFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWT--VM----NKMITARSFFASGVI--GGMIYVAGGSSADL  218 (402)
Q Consensus       147 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~  218 (402)
                      .+.+++. ..|++|++=|.         .+|+++.....+.  .+    +.+|. ... ++...  ++++|++-|.    
T Consensus        25 ~fDAi~~-~~g~~y~Fkg~---------~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG~----   88 (207)
T 1pex_A           25 SLDAITS-LRGETMIFKDR---------FFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRGR----   88 (207)
T ss_dssp             CCSEEEE-ETTEEEEEETT---------EEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEETT----
T ss_pred             CEeEEEe-CCCcEEEEECC---------EEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEccC----
Confidence            3555554 48999999775         5777776543221  11    23332 111 22222  5899999763    


Q ss_pred             CCCCeeEEEcCCCCcE---EEcCC--CCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCeee-----c
Q 040145          219 FELDSAEVLDPVKGNW---RTIAS--MGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-----M  285 (402)
Q Consensus       219 ~~~~~~~~yd~~t~~W---~~~~~--~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-----~  285 (402)
                          .+++|+..+-.-   +.|..  +|.......+++.   +|++|+|-|.        ..++||..+++-..     +
T Consensus        89 ----~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~--------~ywr~d~~~~~~d~gyPr~i  156 (207)
T 1pex_A           89 ----KFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN--------QVWRYDDTNHIMDKDYPRLI  156 (207)
T ss_dssp             ----EEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT--------EEEEEETTTTEECSSCCCBH
T ss_pred             ----EEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC--------EEEEEeCcCccccCCCCccH
Confidence                466676432111   22322  3322123334443   5899999873        68999987643221     1


Q ss_pred             cc---cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          286 AV---GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       286 ~~---~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      ..   .++. ...++...+|++|.+-|.   ..++||..++.
T Consensus       157 ~~~~~Gip~-~iDaAf~~~g~~YfFkg~---~y~rf~~~~~~  194 (207)
T 1pex_A          157 EEDFPGIGD-KVDAVYEKNGYIYFFNGP---IQFEYSIWSNR  194 (207)
T ss_dssp             HHHSTTSCS-CCSEEEEETTEEEEEETT---EEEEEETTTTE
T ss_pred             HHcCCCCCC-CccEEEEcCCcEEEEECC---EEEEEeCCccE
Confidence            10   1121 122333569999999665   79999998764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=91.56  E-value=7.8  Score=35.17  Aligned_cols=174  Identities=9%  Similarity=-0.043  Sum_probs=93.0

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC--CCccccc
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN--KMITARS  197 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~--~~~~~r~  197 (402)
                      .++++++.......+......     .-.+.++-..++.||+.-..       ...++++++....-+.+.  .+..|  
T Consensus       139 ~I~r~~~~g~~~~~~~~~~~~-----~p~glavd~~~g~lY~~d~~-------~~~I~~~~~dg~~~~~l~~~~l~~P--  204 (386)
T 3v65_B          139 RILRANLNGSNVEEVVSTGLE-----SPGGLAVDWVHDKLYWTDSG-------TSRIEVANLDGAHRKVLLWQSLEKP--  204 (386)
T ss_dssp             EEEEEETTSCCEEEEECSSCS-----CCCCEEEETTTTEEEEEETT-------TTEEEECBTTSCSCEEEECSSCSCE--
T ss_pred             cEEEEecCCCCcEEEEeCCCC-----CccEEEEEeCCCeEEEEcCC-------CCeEEEEeCCCCceEEeecCCCCCC--
Confidence            466677666554443221110     11344444347899987543       347888888755433221  22222  


Q ss_pred             ceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCccee-EEE--ECCEEEEEcccccCCccCCcE
Q 040145          198 FFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYD-AAV--LDGKLLVTEGWLWPFFVSPRG  272 (402)
Q Consensus       198 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~-~~~--~~g~ly~~gG~~~~~~~~~~~  272 (402)
                       .++++-  ++.||+.-...     ...++++++....-+.+..  ....... .++  .++.||+.-..      .+.|
T Consensus       205 -~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~--~~~~~PnGlavd~~~~~lY~aD~~------~~~I  270 (386)
T 3v65_B          205 -RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAK------HHVI  270 (386)
T ss_dssp             -EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEEC--SSCSCEEEEEEEGGGTEEEEEETT------TTEE
T ss_pred             -cEEEEEcCCCeEEEeccCC-----CCEEEEEeCCCCCcEEEEE--CCCCCeeeEEEeCCCCEEEEEECC------CCEE
Confidence             233443  67899875321     3678999887544333321  1111222 333  26899998543      3479


Q ss_pred             EEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCC
Q 040145          273 QVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       273 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      +++|+....-..+.. .....-...++.++.||+... ....|.++|..+.
T Consensus       271 ~~~d~dG~~~~~~~~-~~~~~P~giav~~~~ly~td~-~~~~V~~~~~~~G  319 (386)
T 3v65_B          271 ERANLDGSHRKAVIS-QGLPHPFAITVFEDSLYWTDW-HTKSINSANKFTG  319 (386)
T ss_dssp             EEECTTSCSCEEEEC-SSCSSEEEEEEETTEEEEEET-TTTEEEEEETTTC
T ss_pred             EEEeCCCCeeEEEEE-CCCCCceEEEEECCEEEEeeC-CCCeEEEEECCCC
Confidence            999986533222221 111112223457899998854 3678999996444

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=91.10  E-value=13  Score=36.96  Aligned_cols=253  Identities=10%  Similarity=-0.039  Sum_probs=121.8

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecC---CCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLT---HYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE  180 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~---~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d  180 (402)
                      +.++|.+..+.......+++.+..   ...+..+-....................+|+.++++.....  .....++++|
T Consensus       118 G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G--~e~~~i~v~d  195 (741)
T 1yr2_A          118 GASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGG--SDWRTVKFVG  195 (741)
T ss_dssp             TTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETT--CSEEEEEEEE
T ss_pred             CCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCC--CceEEEEEEE
Confidence            566776655444334556777765   56666643221100000012334455456665555433211  1124799999


Q ss_pred             CCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCC--------CCCCCeeEEEcCCCCcE--EEcCCCCC-CCccee
Q 040145          181 MQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSAD--------LFELDSAEVLDPVKGNW--RTIASMGT-NMASYD  248 (402)
Q Consensus       181 ~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~--------~~~~~~~~~yd~~t~~W--~~~~~~~~-~~~~~~  248 (402)
                      ..+++..... .+... ....+.. +..|++.. .+..        ......++.++..++.-  ..+-..+. +.....
T Consensus       196 l~tg~~~~~~-~~~~~-~~~~~wspD~~l~~~~-~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          196 VADGKPLADE-LKWVK-FSGLAWLGNDALLYSR-FAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             TTTCCEEEEE-EEEEE-SCCCEESTTSEEEEEE-CCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             CCCCCCCCcc-CCCce-eccEEEECCCEEEEEE-ecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            9999875431 11111 0122222 22344333 2111        01134577788766542  12211121 111222


Q ss_pred             EE-EECCEEEEEcccccCCccCCcEEEEeCCCC--C-eeeccccccCCCceeEEEECCEEEEEeccC--CcEEEEEeCCC
Q 040145          249 AA-VLDGKLLVTEGWLWPFFVSPRGQVYDPSTD--N-WESMAVGLREGWTGSSVVVYEHLFVVSELE--RMKLKVYDPST  322 (402)
Q Consensus       249 ~~-~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~--~-W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~--~~~~~~yd~~~  322 (402)
                      .. .-+|+..++....... ..+.++.+|..+.  . |..+..... ........-++.||+....+  ...++.+|.++
T Consensus       273 ~~~SpDG~~l~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTD-PVNTVHVARVTNGKIGPVTALIPDLK-AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             EEECTTSCEEEEEEECTTC-SCCEEEEEEEETTEECCCEEEECSSS-SCEEEEEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             EEECCCCCEEEEEEEccCC-CcceEEEEECCCCCCcccEEecCCCC-ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            22 2267544443322211 2357899999877  6 887764222 22222223466777765432  45799999987


Q ss_pred             --CceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145          323 --DSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       323 --~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                        ..|..+-  +-..  .....+...++.|++....+.  ...++.++.
T Consensus       351 ~~~~~~~l~--~~~~--~~l~~~~~~~~~lv~~~~~dg--~~~l~~~~~  393 (741)
T 1yr2_A          351 STPRFDTVV--PESK--DNLESVGIAGNRLFASYIHDA--KSQVLAFDL  393 (741)
T ss_dssp             SSCEEEEEE--CCCS--SEEEEEEEEBTEEEEEEEETT--EEEEEEEET
T ss_pred             CccccEEEe--cCCC--CeEEEEEEECCEEEEEEEECC--EEEEEEEeC
Confidence              5788875  2221  111233445778777765332  234566553

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=91.08  E-value=8.2  Score=34.54  Aligned_cols=177  Identities=5%  Similarity=-0.028  Sum_probs=92.0

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc-
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF-  198 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~-  198 (402)
                      .+.++|+.+.+-.......       ..-..+++..++++++.++.        +.+.+++..++.............. 
T Consensus       158 ~i~iwd~~~~~~~~~~~~~-------~~V~~v~fspdg~~l~s~s~--------~~~~~~~~~~~~~~~~~~~~~~~~~v  222 (365)
T 4h5i_A          158 IMRIIDPSDLTEKFEIETR-------GEVKDLHFSTDGKVVAYITG--------SSLEVISTVTGSCIARKTDFDKNWSL  222 (365)
T ss_dssp             EEEEEETTTTEEEEEEECS-------SCCCEEEECTTSSEEEEECS--------SCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred             EEEEeECCCCcEEEEeCCC-------CceEEEEEccCCceEEeccc--------eeEEEEEeccCcceeeeecCCCCCCE
Confidence            4778888877654322111       11234445457777777653        2577888887764432222111111 


Q ss_pred             eEEE-EECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC--CCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEE
Q 040145          199 FASG-VIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA--SMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQ  273 (402)
Q Consensus       199 ~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~  273 (402)
                      ..++ .-+++.++.++.++..  ...+..+|..........  .+........++.+  +|++++.|+.+      ..+.
T Consensus       223 ~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D------~~V~  294 (365)
T 4h5i_A          223 SKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND------NSIA  294 (365)
T ss_dssp             EEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT------SCEE
T ss_pred             EEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC------CEEE
Confidence            1222 2367777777654432  234566776665543321  11111122222223  78888888764      3689


Q ss_pred             EEeCCCCCeeeccccccCCCcee--EEEE--CCEEEEEeccCCcEEEEEeCCCC
Q 040145          274 VYDPSTDNWESMAVGLREGWTGS--SVVV--YEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       274 ~yd~~~~~W~~~~~~~~~~~~~~--~~~~--~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      +||..+.+-  +.. ........  .+.+  +|++++.|+. ...|.++|...+
T Consensus       295 iwd~~~~~~--~~~-~~~gH~~~V~~v~fSpdg~~laS~S~-D~tvrvw~ip~~  344 (365)
T 4h5i_A          295 LVKLKDLSM--SKI-FKQAHSFAITEVTISPDSTYVASVSA-ANTIHIIKLPLN  344 (365)
T ss_dssp             EEETTTTEE--EEE-ETTSSSSCEEEEEECTTSCEEEEEET-TSEEEEEECCTT
T ss_pred             EEECCCCcE--EEE-ecCcccCCEEEEEECCCCCEEEEEeC-CCeEEEEEcCCC
Confidence            999987642  221 11111111  2333  6777777665 567888887543

>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A

Probab=91.06  E-value=2.2  Score=35.73  Aligned_cols=141  Identities=8%  Similarity=0.073  Sum_probs=75.8

Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEECC---------------CCceeecCCCcc--cccceEEEEECCEEEEEcCCCCC
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEMQ---------------KNRWTVMNKMIT--ARSFFASGVIGGMIYVAGGSSAD  217 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~---------------t~~W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~  217 (402)
                      ..+++|++-|.         .+|+++..               +..|..||....  .....+....++++|++-|.   
T Consensus        14 ~~ge~yfFkg~---------~~wr~~~~~~~~~~~~~~~P~~I~~~W~~Lp~~~f~p~~iDaaf~~~~g~~~fFKg~---   81 (227)
T 3lp9_A           14 KNNEAYFFIND---------KYVLLDYAPGSSRDKVLYGPTPVRDGFKSLNQTIFGSYGIDCSFDTENNEAFIFYEN---   81 (227)
T ss_dssp             STTEEEEEETT---------EEEEEECCTTSSCCEEEEEEEEHHHHSGGGTTSHHHHHCCSEEEECSTTEEEEEETT---
T ss_pred             CCCeEEEEECC---------EEEEEeCCCCCccccccCCceEHhhcCCcCCcccCCCCCceEEEECCCCEEEEEeCC---
Confidence            46899999765         46666552               223555543221  12222222468899999873   


Q ss_pred             CCCCCeeEEEc--CCC-C-cE----EEc----CCCCCC--CcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCC
Q 040145          218 LFELDSAEVLD--PVK-G-NW----RTI----ASMGTN--MASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTD  280 (402)
Q Consensus       218 ~~~~~~~~~yd--~~t-~-~W----~~~----~~~~~~--~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~  280 (402)
                           .+++|+  +.+ + .-    ..+    +.+|..  .....++..   ++++|+|-|.        ..++||..++
T Consensus        82 -----~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG~--------~yw~~d~~~~  148 (227)
T 3lp9_A           82 -----FCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKGD--------QYARIDYGSN  148 (227)
T ss_dssp             -----EEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEETT--------EEEEEETTTT
T ss_pred             -----EEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEECC--------EEEEEeCCCc
Confidence                 567777  321 1 10    011    123311  112233333   6899999874        6899998754


Q ss_pred             Ceee-----ccccccC-------CCceeEEE--ECCEEEEEeccCCcEEEEEeCCCC
Q 040145          281 NWES-----MAVGLRE-------GWTGSSVV--VYEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       281 ~W~~-----~~~~~~~-------~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      +-..     +....|.       ....++..  .++++|.+-|.   ..|+||..++
T Consensus       149 ~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~---~Ywr~d~~~~  202 (227)
T 3lp9_A          149 SMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDD---HYARVKVTPX  202 (227)
T ss_dssp             EESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEETT---EEEEEECCSS
T ss_pred             cccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEECC---EEEEEECCcc
Confidence            3221     1111121       11222222  36899999775   7999998876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=91.03  E-value=9.6  Score=35.22  Aligned_cols=118  Identities=8%  Similarity=-0.073  Sum_probs=63.3

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCC--CCCCCceEEEEEC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD--VDCPLDLVLKYEM  181 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~--~~~~~~~~~~~d~  181 (402)
                      ...+|+...........+.++|+.+.+-..--+..  .    .. +.+....+..+|+.--....  .....+.+.++|+
T Consensus        84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG--~----~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG--F----LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC--S----SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC--C----CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            56788886322111167999999988754322222  1    12 44444445578887421000  0002457999999


Q ss_pred             CCCceee-cCCCc-cc-----ccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145          182 QKNRWTV-MNKMI-TA-----RSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNW  234 (402)
Q Consensus       182 ~t~~W~~-~~~~~-~~-----r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  234 (402)
                      .|++-.. ++ ++ .+     ...+.+++.  +..+|+..-.     ..+.+.++|..+++-
T Consensus       157 ~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~-----~~~~VsVID~~t~kv  212 (426)
T 3c75_H          157 VTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKNLLFYQFS-----PAPAVGVVDLEGKTF  212 (426)
T ss_dssp             TTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSEEEEEECS-----SSCEEEEEETTTTEE
T ss_pred             CCCcEEEEEE-CCCccccccCCCcceEEEcCCCCEEEEEecC-----CCCeEEEEECCCCeE
Confidence            9986432 21 11 11     122333332  4578887421     146789999998764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=91.00  E-value=0.094  Score=51.08  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=32.0

Q ss_pred             CCCCcHHHHHHhhccC-ccchhhhhhhccHhHHHhh
Q 040145           53 IPGLPDDVALNCLLRL-PVESHAACRAVCKRWHLLL   87 (402)
Q Consensus        53 ~~~Lp~dl~~~il~rl-p~~~l~~~~~v~k~W~~l~   87 (402)
                      .+.||||++..||.+| |.++..++..|||+|+.+.
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            3579999999999999 8999999999999998873

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=90.99  E-value=7.8  Score=34.14  Aligned_cols=149  Identities=7%  Similarity=0.061  Sum_probs=71.1

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee-cCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEV  226 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~  226 (402)
                      .++++..++.+++.|+.+       ..+.+||..+++... +..  ....-.+++.. +++.++.|+.      -..+.+
T Consensus        80 ~~~~~~~~~~~l~s~s~D-------~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~~~------d~~i~~  144 (343)
T 2xzm_R           80 SDLALSQENCFAISSSWD-------KTLRLWDLRTGTTYKRFVG--HQSEVYSVAFSPDNRQILSAGA------EREIKL  144 (343)
T ss_dssp             EEEEECSSTTEEEEEETT-------SEEEEEETTSSCEEEEEEC--CCSCEEEEEECSSTTEEEEEET------TSCEEE
T ss_pred             EEEEECCCCCEEEEEcCC-------CcEEEEECCCCcEEEEEcC--CCCcEEEEEECCCCCEEEEEcC------CCEEEE
Confidence            334444466677777752       278999998875322 111  11111222322 4555666665      345778


Q ss_pred             EcCCCCcEEEcCCCCCCCcceeEEEE--CC----------EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCc
Q 040145          227 LDPVKGNWRTIASMGTNMASYDAAVL--DG----------KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWT  294 (402)
Q Consensus       227 yd~~t~~W~~~~~~~~~~~~~~~~~~--~g----------~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~  294 (402)
                      ||.....-...............+.+  ++          .+++.|+.+      ..+..||.....-..+.. .. ...
T Consensus       145 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~-h~-~~v  216 (343)
T 2xzm_R          145 WNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD------GRLKVWNTNFQIRYTFKA-HE-SNV  216 (343)
T ss_dssp             EESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT------SEEEEEETTTEEEEEEEC-CS-SCE
T ss_pred             EeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC------CEEEEEcCCCceeEEEcC-cc-ccc
Confidence            88764433222222111111222222  11          455556543      367788843221111111 11 111


Q ss_pred             eeEEEE--CCEEEEEeccCCcEEEEEeCCC
Q 040145          295 GSSVVV--YEHLFVVSELERMKLKVYDPST  322 (402)
Q Consensus       295 ~~~~~~--~~~l~~~gg~~~~~~~~yd~~~  322 (402)
                       ..+.+  +++.++.|+. ...+.+||..+
T Consensus       217 -~~~~~s~~g~~l~sgs~-dg~v~iwd~~~  244 (343)
T 2xzm_R          217 -NHLSISPNGKYIATGGK-DKKLLIWDILN  244 (343)
T ss_dssp             -EEEEECTTSSEEEEEET-TCEEEEEESSC
T ss_pred             -eEEEECCCCCEEEEEcC-CCeEEEEECCC
Confidence             11222  6777777765 45788999843

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=90.94  E-value=13  Score=36.43  Aligned_cols=200  Identities=11%  Similarity=0.056  Sum_probs=113.5

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF  199 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  199 (402)
                      .+..+|+....-..+.+++.    .....+...-..++.||+..-.       ...++++++.....+.+-.... ....
T Consensus        16 ~I~~i~l~~~~~~~~~~~~~----~~~~~~l~~d~~~~~lywtD~~-------~~~I~r~~~~g~~~~~v~~~g~-~~P~   83 (628)
T 4a0p_A           16 DIRRISLETNNNNVAIPLTG----VKEASALDFDVTDNRIYWTDIS-------LKTISRAFMNGSALEHVVEFGL-DYPE   83 (628)
T ss_dssp             EEEEEESSCTTCEEECCCCS----CSCEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEECSSC-SCCC
T ss_pred             cEEEEECCCCCcceEEEcCC----CCceEEEEEECCCCEEEEEECC-------CCeEEEEECCCCCcEEEEeCCC-CCcc
Confidence            36677777654433323321    1122344444457899998543       3478899987665544322111 1223


Q ss_pred             EEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc--CCCCCCCcceeEEEE--CCEEEEEc-ccccCCccCCcE
Q 040145          200 ASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI--ASMGTNMASYDAAVL--DGKLLVTE-GWLWPFFVSPRG  272 (402)
Q Consensus       200 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~~~~~~~~~~--~g~ly~~g-G~~~~~~~~~~~  272 (402)
                      ++++  .+++||+.-..      ...++++++....=+.+  ..+..|   .+.++-  +|.||+.- |.      ...+
T Consensus        84 GlAvD~~~~~LY~tD~~------~~~I~v~~~dG~~~~~l~~~~l~~P---~~iavdp~~G~lY~tD~g~------~~~I  148 (628)
T 4a0p_A           84 GMAVDWLGKNLYWADTG------TNRIEVSKLDGQHRQVLVWKDLDSP---RALALDPAEGFMYWTEWGG------KPKI  148 (628)
T ss_dssp             EEEEETTTTEEEEEETT------TTEEEEEETTSTTCEEEECSSCCCE---EEEEEETTTTEEEEEECSS------SCEE
T ss_pred             eEEEEeCCCEEEEEECC------CCEEEEEecCCCcEEEEEeCCCCCc---ccEEEccCCCeEEEeCCCC------CCEE
Confidence            4454  47899998543      56789998865443333  222222   223333  68999975 21      2478


Q ss_pred             EEEeCCCCCeeeccccccCCCceeEEEE---CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCE
Q 040145          273 QVYDPSTDNWESMAVGLREGWTGSSVVV---YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCR  349 (402)
Q Consensus       273 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~  349 (402)
                      +++++....-+.+.....  +- ..+.+   +++||+.-.. .+.|+++|++...=+.+.. .+    ...+++++.++.
T Consensus       149 ~r~~~dG~~~~~l~~~~~--~P-~GlalD~~~~~LY~aD~~-~~~I~~~d~dG~~~~v~~~-~l----~~P~glav~~~~  219 (628)
T 4a0p_A          149 DRAAMDGSERTTLVPNVG--RA-NGLTIDYAKRRLYWTDLD-TNLIESSNMLGLNREVIAD-DL----PHPFGLTQYQDY  219 (628)
T ss_dssp             EEEETTSCSCEEEECSCS--SE-EEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEEE-CC----SCEEEEEEETTE
T ss_pred             EEEeCCCCceEEEECCCC--Cc-ceEEEccccCEEEEEECC-CCEEEEEcCCCCceEEeec-cC----CCceEEEEECCE
Confidence            899887655444432111  11 12333   6889988553 6789999997643233221 12    345688888999


Q ss_pred             EEEEec
Q 040145          350 VYVVGR  355 (402)
Q Consensus       350 i~v~GG  355 (402)
                      ||+.--
T Consensus       220 ly~tD~  225 (628)
T 4a0p_A          220 IYWTDW  225 (628)
T ss_dssp             EEEEET
T ss_pred             EEEecC
Confidence            999864

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=90.92  E-value=5.6  Score=32.31  Aligned_cols=145  Identities=12%  Similarity=0.102  Sum_probs=79.7

Q ss_pred             ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC--cee--ec----CCCcccccceEEEEE--CCEEEEEcCCCCC
Q 040145          148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN--RWT--VM----NKMITARSFFASGVI--GGMIYVAGGSSAD  217 (402)
Q Consensus       148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~--~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~  217 (402)
                      +.+++. ..|++|++=|.         .+|+++....  ...  .+    +.+|.. .. ++...  ++++|++-|.   
T Consensus         9 fDAi~~-~~g~~yfFkg~---------~~Wr~~~~~~~~~~~p~~Is~~w~glP~~-ID-Aa~~~~~~~~~yfFkG~---   73 (195)
T 1itv_A            9 FDAIAE-IGNQLYLFKDG---------KYWRFSEGRGSRPQGPFLIADKWPALPRK-LD-SVFEEPLSKKLFFFSGR---   73 (195)
T ss_dssp             CSEEEE-ETTEEEEEETT---------EEEEECCSSSCCCEEEEEHHHHCTTSCSS-CS-EEEECTTTCCEEEEETT---
T ss_pred             CCEEEE-eCCEEEEEECC---------EEEEEECCccccCCCcEEhhhccCCCCCC-cc-EEEEECCCCeEEEEeCC---
Confidence            444444 48999999775         6888877542  111  11    233321 11 22222  5789998773   


Q ss_pred             CCCCCeeEEEcCCCCcE-EEcC--CCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeee-----ccc
Q 040145          218 LFELDSAEVLDPVKGNW-RTIA--SMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-----MAV  287 (402)
Q Consensus       218 ~~~~~~~~~yd~~t~~W-~~~~--~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-----~~~  287 (402)
                           ..++|+..+..- +.+.  .+|.......+++.  +|++|++-|.        ..+.||..+++-..     +..
T Consensus        74 -----~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~--------~ywr~d~~~~~~~~gyPr~i~~  140 (195)
T 1itv_A           74 -----QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSASEVDR  140 (195)
T ss_dssp             -----EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGCEEHHH
T ss_pred             -----EEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC--------EEEEEeCCcccccCCCccChhh
Confidence                 467776542111 1122  22322123334433  7899999773        67999987654221     111


Q ss_pred             ---cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          288 ---GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       288 ---~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                         ..|. ...++...+|.+|.+-|.   ..+.||..+..
T Consensus       141 ~w~Gvp~-~idaa~~~~g~~Yffkg~---~y~~~~~~~~~  176 (195)
T 1itv_A          141 MFPGVPL-DTHDVFQFREKAYFCQDR---FYWRVSSRSEL  176 (195)
T ss_dssp             HSTTSCS-SCSEEEEETTEEEEEETT---EEEEEECCTTC
T ss_pred             cCCCCCC-CCCEEEEeCCeEEEEeCC---EEEEEECCccE
Confidence               1121 122334568999999775   79999997764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=90.88  E-value=8.3  Score=34.27  Aligned_cols=180  Identities=9%  Similarity=0.008  Sum_probs=83.1

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR  235 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  235 (402)
                      ++.+.+.|+.+       ..+.+||..+++-...  +...-.-.++....+.+++..        ...+.+||..+.. +
T Consensus        70 ~~~~~~~~~~d-------~~v~iWd~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~~--------~~~i~i~d~~~~~-~  131 (355)
T 3vu4_A           70 TNYVAFVTGVK-------EVVHIWDDVKKQDVSR--IKVDAPVKDLFLSREFIVVSY--------GDVISVFKFGNPW-K  131 (355)
T ss_dssp             SSEEEEECSST-------TEEEEEETTTTEEEEE--EECSSCEEEEEECSSEEEEEE--------TTEEEEEESSTTC-C
T ss_pred             CCEEEEEECCc-------cEEEEEECCCCcEEEE--EECCCceEEEEEcCCEEEEEE--------cCEEEEEECCCCc-e
Confidence            44565666642       2799999988864321  111111122333345555543        3468889987751 1


Q ss_pred             EcCCCCCCCcceeEEEECCEEEEE-cccccCCccCCcEEEEeCCCCC-eee-------------ccccccCCCcee-EEE
Q 040145          236 TIASMGTNMASYDAAVLDGKLLVT-EGWLWPFFVSPRGQVYDPSTDN-WES-------------MAVGLREGWTGS-SVV  299 (402)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~g~ly~~-gG~~~~~~~~~~~~~yd~~~~~-W~~-------------~~~~~~~~~~~~-~~~  299 (402)
                      .+..+..+ .. ..+...+.+.+. |+..      ..+..||..++. +..             +.. ........ ++.
T Consensus       132 ~~~~~~~~-~~-~~~~s~~~la~~sg~~~------g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~-~~~h~~~v~~~~  202 (355)
T 3vu4_A          132 RITDDIRF-GG-VCEFSNGLLVYSNEFNL------GQIHITKLQSSGSATTQDQGVQQKAILGKGVL-IKAHTNPIKMVR  202 (355)
T ss_dssp             BSSCCEEE-EE-EEEEETTEEEEEESSCT------TCEEEEECCC------------------CCEE-ECCCSSCEEEEE
T ss_pred             eeEEeccC-Cc-eEEEEccEEEEeCCCcC------cEEEEEECCCCCccccccccccccccCcccEE-EEccCCceEEEE
Confidence            11111111 11 111223333333 3332      368889987643 111             111 11111111 122


Q ss_pred             E--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCC-ccccCCeEEE-EeCCEEEEEecCceeeeEEEEec
Q 040145          300 V--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLP-EQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRL  367 (402)
Q Consensus       300 ~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p-~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~  367 (402)
                      +  ++++++.|+.++..+.+||..+.+-...-  ... .. ..-.+++ ..++++++.|+.++.  ..+|.+
T Consensus       203 ~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~--~~g~h~-~~v~~~~~s~~~~~l~s~s~d~~--v~iw~~  269 (355)
T 3vu4_A          203 LNRKSDMVATCSQDGTIIRVFKTEDGVLVREF--RRGLDR-ADVVDMKWSTDGSKLAVVSDKWT--LHVFEI  269 (355)
T ss_dssp             ECTTSSEEEEEETTCSEEEEEETTTCCEEEEE--ECTTCC-SCEEEEEECTTSCEEEEEETTCE--EEEEES
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE--EcCCCC-CcEEEEEECCCCCEEEEEECCCE--EEEEEc
Confidence            3  67777777764434999999876432211  100 11 1112232 346788888876543  334444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=90.69  E-value=8.2  Score=33.85  Aligned_cols=188  Identities=10%  Similarity=-0.014  Sum_probs=99.1

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCC----CcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEE
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTH----YCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKY  179 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~----~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~  179 (402)
                      ++.||+...    ....++++|+..    .....+.....     ..-.+.++-..++.||+.-..       ...+.++
T Consensus        41 ~~~ly~~D~----~~~~I~~~~~~g~~~~~~~~~~~~~~~-----~~p~glavd~~~~~ly~~d~~-------~~~I~~~  104 (316)
T 1ijq_A           41 SNRIYWSDL----SQRMICSTQLDRAHGVSSYDTVISRDI-----QAPDGLAVDWIHSNIYWTDSV-------LGTVSVA  104 (316)
T ss_dssp             TTEEEEEET----TTTEEEEEEC--------CEEEECSSC-----SCCCEEEEETTTTEEEEEETT-------TTEEEEE
T ss_pred             CCEEEEEEC----CCCcEEEEECCCCCCCcccEEEEeCCC-----CCcCEEEEeecCCeEEEEECC-------CCEEEEE
Confidence            567777752    234577888765    22222211110     022344443347899998543       3478999


Q ss_pred             ECCCCceeecC--CCcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE-EEE--
Q 040145          180 EMQKNRWTVMN--KMITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA-AVL--  252 (402)
Q Consensus       180 d~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~-~~~--  252 (402)
                      |+....-+.+-  .+..|   ..+++  .++.||+....    . ...++++++....-+.+...  ....... ++-  
T Consensus       105 ~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~----~-~~~I~~~~~dG~~~~~~~~~--~~~~P~gla~d~~  174 (316)
T 1ijq_A          105 DTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG----T-PAKIKKGGLNGVDIYSLVTE--NIQWPNGITLDLL  174 (316)
T ss_dssp             ETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS----S-SCEEEEEETTSCCEEEEECS--SCSCEEEEEEETT
T ss_pred             eCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccC----C-CCeEEEEcCCCCCeEEEEEC--CCCCceEEEEecc
Confidence            98765433321  22222   23444  36899988532    0 35789998865443333211  1122223 332  


Q ss_pred             CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccC-CCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLRE-GWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      +++||+.-..      .+.++++|+....-+.+...... ......++.++.+|+... ....|.++|+.+.+
T Consensus       175 ~~~lY~~D~~------~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~-~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          175 SGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI-INEAIFSANRLTGS  240 (316)
T ss_dssp             TTEEEEEETT------TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEET-TTTEEEEEETTTCC
T ss_pred             CCEEEEEECC------CCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEEC-CCCeEEEEeCCCCc
Confidence            6789997543      34799999875433333221111 111122456899998764 36789999986554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=90.64  E-value=13  Score=35.99  Aligned_cols=113  Identities=21%  Similarity=0.321  Sum_probs=67.6

Q ss_pred             EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCCC---c---ceeEEEECCEEEEEcccccCCccCCc
Q 040145          200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTNM---A---SYDAAVLDGKLLVTEGWLWPFFVSPR  271 (402)
Q Consensus       200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~---~---~~~~~~~~g~ly~~gG~~~~~~~~~~  271 (402)
                      +.++.++++|+....       ..++.+|.+|++  |+.-...+...   +   ....++.+++||+...       ...
T Consensus        63 ~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~  128 (582)
T 1flg_A           63 QAIVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DAS  128 (582)
T ss_dssp             CCEEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTE
T ss_pred             ccEEECCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCE
Confidence            345679999998763       348999998875  88654332211   0   1233567899988532       136


Q ss_pred             EEEEeCCCCC--eeeccccccCC--CceeEEEECC------EEEEEecc-----CCcEEEEEeCCCC--ceee
Q 040145          272 GQVYDPSTDN--WESMAVGLREG--WTGSSVVVYE------HLFVVSEL-----ERMKLKVYDPSTD--SWET  327 (402)
Q Consensus       272 ~~~yd~~~~~--W~~~~~~~~~~--~~~~~~~~~~------~l~~~gg~-----~~~~~~~yd~~~~--~W~~  327 (402)
                      ++++|.++++  |+.-.......  .....++.++      .+|+ |..     ....++.||.++.  .|+.
T Consensus       129 l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~  200 (582)
T 1flg_A          129 VVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             EEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             EEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeec
Confidence            8999998875  87532211111  1122245555      5654 332     1457999999876  4864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=90.49  E-value=8.7  Score=33.83  Aligned_cols=172  Identities=10%  Similarity=0.041  Sum_probs=77.6

Q ss_pred             eEEEeecCCCcEE-eCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccc
Q 040145          120 QWQVLDLTHYCWH-TIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSF  198 (402)
Q Consensus       120 ~~~~~d~~~~~W~-~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~  198 (402)
                      .+.+||..+.+.. .+..-.       ....++.+..++..++.|+.+       ..+.+||.....-............
T Consensus        99 ~v~lwd~~~~~~~~~~~~h~-------~~v~~v~~sp~~~~l~s~~~d-------~~i~~wd~~~~~~~~~~~~~~~~~~  164 (343)
T 2xzm_R           99 TLRLWDLRTGTTYKRFVGHQ-------SEVYSVAFSPDNRQILSAGAE-------REIKLWNILGECKFSSAEKENHSDW  164 (343)
T ss_dssp             EEEEEETTSSCEEEEEECCC-------SCEEEEEECSSTTEEEEEETT-------SCEEEEESSSCEEEECCTTTSCSSC
T ss_pred             cEEEEECCCCcEEEEEcCCC-------CcEEEEEECCCCCEEEEEcCC-------CEEEEEeccCCceeeeecccCCCce
Confidence            3778888776532 221111       223344444466666777652       2688888864432222211111111


Q ss_pred             -eEEEEEC-----------CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEccccc
Q 040145          199 -FASGVIG-----------GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLW  264 (402)
Q Consensus       199 -~~~~~~~-----------~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~  264 (402)
                       .++....           +.+++.|+.      -..+.+||.....-..+   .........+.+  +|+.++.|+.+ 
T Consensus       165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~---~~h~~~v~~~~~s~~g~~l~sgs~d-  234 (343)
T 2xzm_R          165 VSCVRYSPIMKSANKVQPFAPYFASVGW------DGRLKVWNTNFQIRYTF---KAHESNVNHLSISPNGKYIATGGKD-  234 (343)
T ss_dssp             EEEEEECCCCCSCSCCCSSCCEEEEEET------TSEEEEEETTTEEEEEE---ECCSSCEEEEEECTTSSEEEEEETT-
T ss_pred             eeeeeeccccccccccCCCCCEEEEEcC------CCEEEEEcCCCceeEEE---cCccccceEEEECCCCCEEEEEcCC-
Confidence             1112111           145566665      34677888432211111   111111222222  67777777753 


Q ss_pred             CCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCc
Q 040145          265 PFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       265 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                           ..+..||+.+..-. ... ......-..+.+  ++.++. +|. ...+.+||..+..
T Consensus       235 -----g~v~iwd~~~~~~~-~~~-~~~~~~v~~v~~sp~~~~la-~~~-d~~v~iw~~~~~~  287 (343)
T 2xzm_R          235 -----KKLLIWDILNLTYP-QRE-FDAGSTINQIAFNPKLQWVA-VGT-DQGVKIFNLMTQS  287 (343)
T ss_dssp             -----CEEEEEESSCCSSC-SEE-EECSSCEEEEEECSSSCEEE-EEE-SSCEEEEESSSCC
T ss_pred             -----CeEEEEECCCCccc-cee-ecCCCcEEEEEECCCCCEEE-EEC-CCCEEEEEeCCCC
Confidence                 36888998432211 110 111111112222  455544 444 3358888887643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=90.41  E-value=11  Score=34.87  Aligned_cols=225  Identities=13%  Similarity=0.063  Sum_probs=113.5

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.||+....     ..+.++|+.+++...+....       ..-..+++..++.||+......   .....++.++...
T Consensus       152 ~g~Lyv~D~~-----~~I~~id~~~g~v~~~~~~~-------~~P~giavd~dG~lyVad~~~~---~~~~gv~~~~~~~  216 (433)
T 4hw6_A          152 YDDLYWVGQR-----DAFRHVDFVNQYVDIKTTNI-------GQCADVNFTLNGDMVVVDDQSS---DTNTGIYLFTRAS  216 (433)
T ss_dssp             TCEEEEECBT-----SCEEEEETTTTEEEEECCCC-------SCEEEEEECTTCCEEEEECCSC---TTSEEEEEECGGG
T ss_pred             CCEEEEEeCC-----CCEEEEECCCCEEEEeecCC-------CCccEEEECCCCCEEEEcCCCC---cccceEEEEECCC
Confidence            4778887432     56889999888877664321       1223344444666888754311   1123466666543


Q ss_pred             CceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE-EEcCCCCCCCcceeEEEE-CC-EEEE
Q 040145          184 NRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNW-RTIASMGTNMASYDAAVL-DG-KLLV  258 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~~~~~~~-~g-~ly~  258 (402)
                      + +.....++.......+++.  ++.||+.-..      ...+++||+.++.- +.+............++. +| .||+
T Consensus       217 ~-~~~~~~~~~~~~P~giavd~~~G~lyv~d~~------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYv  289 (433)
T 4hw6_A          217 G-FTERLSLCNARGAKTCAVHPQNGKIYYTRYH------HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYI  289 (433)
T ss_dssp             T-TCCEEEEEECSSBCCCEECTTTCCEEECBTT------CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEE
T ss_pred             C-eeccccccccCCCCEEEEeCCCCeEEEEECC------CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEE
Confidence            2 2210111111222233433  5788887542      45799999987765 333211111111123332 44 4888


Q ss_pred             EcccccCCccCCcEEEEeCC--CCCeee---cccc-----cc------CCCcee--EEE----------ECCEEEEEecc
Q 040145          259 TEGWLWPFFVSPRGQVYDPS--TDNWES---MAVG-----LR------EGWTGS--SVV----------VYEHLFVVSEL  310 (402)
Q Consensus       259 ~gG~~~~~~~~~~~~~yd~~--~~~W~~---~~~~-----~~------~~~~~~--~~~----------~~~~l~~~gg~  310 (402)
                      .-..      .+.+.++|..  ++....   +...     ..      ......  .++          -+|.||+....
T Consensus       290 ad~~------~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~  363 (433)
T 4hw6_A          290 IYNG------KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD  363 (433)
T ss_dssp             EETT------TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred             EeCC------CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence            7532      2468886654  343321   1100     00      001111  233          35678887543


Q ss_pred             CCcEEEEEeCCCCceeecCCCCC-------------CccccCCeEEEEe--CCEEEEEecCce
Q 040145          311 ERMKLKVYDPSTDSWETIEGPPL-------------PEQICKPFAVNAC--DCRVYVVGRNLH  358 (402)
Q Consensus       311 ~~~~~~~yd~~~~~W~~~~~~~~-------------p~~~~~~~~~~~~--~~~i~v~GG~~~  358 (402)
                       ...|.++|+. .....+.+...             ........++++.  ++.|||.--.++
T Consensus       364 -n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~  424 (433)
T 4hw6_A          364 -SHTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH  424 (433)
T ss_dssp             -TTEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred             -CCEEEEECCC-CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence             6789999984 45555543211             1122345567765  789999765443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=90.08  E-value=11  Score=34.38  Aligned_cols=159  Identities=14%  Similarity=0.083  Sum_probs=85.1

Q ss_pred             eEEEEECCCCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCC----cEEEc-C-CCCCCCcc
Q 040145          175 LVLKYEMQKNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKG----NWRTI-A-SMGTNMAS  246 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~----~W~~~-~-~~~~~~~~  246 (402)
                      ++.++|..+..++.+.+  ......+++..  +++||+.--.      ...++.+++...    ....+ . .+..   -
T Consensus        93 ~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~~---p  161 (400)
T 3p5b_L           93 EVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRDIQA---P  161 (400)
T ss_dssp             EEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETT------TTEEEEEEC------CCCEEEECSSCSC---E
T ss_pred             eeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecC------CCeEEEEEcccCCCCCcceEEEeCCCCC---c
Confidence            67788887776655422  12223344443  5799998643      456888887652    22222 2 1111   1


Q ss_pred             eeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc-cccCCCceeEEE--ECCEEEEEeccCCcEEEEEeCC
Q 040145          247 YDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV-GLREGWTGSSVV--VYEHLFVVSELERMKLKVYDPS  321 (402)
Q Consensus       247 ~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~  321 (402)
                      .+.++  .++.||+.-..      ...+.++|+....-..+.. ....+  ...++  .++.||+........|++++++
T Consensus       162 ~glavD~~~~~lY~~d~~------~~~I~~~~~~g~~~~~l~~~~~~~P--~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSKP--RAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             EEEEEETTTTEEEEEETT------TTEEEEECTTTCSEEEEEECSSCCE--EEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             ccEEEEecCCceEEEECC------CCeEEEEeCCCCceEEEEeCCCCCc--ceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence            22333  27899998643      2478899987665444432 11111  11222  3688998863334689999987


Q ss_pred             CCceeecCCCCCCccccCCeEEEEe--CCEEEEEecC
Q 040145          322 TDSWETIEGPPLPEQICKPFAVNAC--DCRVYVVGRN  356 (402)
Q Consensus       322 ~~~W~~~~~~~~p~~~~~~~~~~~~--~~~i~v~GG~  356 (402)
                      ...=+.+....+    ....++++-  +++||+.-..
T Consensus       234 G~~~~~~~~~~l----~~P~glavd~~~~~lY~aD~~  266 (400)
T 3p5b_L          234 GVDIYSLVTENI----QWPNGITLDLLSGRLYWVDSK  266 (400)
T ss_dssp             SCSCEEEECSSC----SCEEEEEEETTTTEEEEEETT
T ss_pred             CCccEEEEECCC----CceEEEEEEeCCCEEEEEECC
Confidence            643333321111    233455543  6788887543

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=89.98  E-value=6.9  Score=35.42  Aligned_cols=122  Identities=13%  Similarity=0.055  Sum_probs=70.2

Q ss_pred             cCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCC-----CCcE-EEcCC-CCCCCcceeEEEECCEEEEEcc
Q 040145          189 MNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPV-----KGNW-RTIAS-MGTNMASYDAAVLDGKLLVTEG  261 (402)
Q Consensus       189 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~-----t~~W-~~~~~-~~~~~~~~~~~~~~g~ly~~gG  261 (402)
                      ++..+..-.-|+.+.+++.-|++|-..+.-.+..--..|-+.     ...- +.++. ........+.-.++|.||++--
T Consensus       277 L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyYdgvLyLtTR  356 (670)
T 3ju4_A          277 LGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITR  356 (670)
T ss_dssp             CCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEETTEEEEEEE
T ss_pred             cccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEec
Confidence            455555566788899988888888665444323322333222     1112 22322 2222233445567999999854


Q ss_pred             cccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEecc
Q 040145          262 WLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSEL  310 (402)
Q Consensus       262 ~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~  310 (402)
                      ...+...-..+.+-+.....|+.+.-+-........ +..++.||+||..
T Consensus       357 gt~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgsE  406 (670)
T 3ju4_A          357 GTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSE  406 (670)
T ss_dssp             ESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEEC
T ss_pred             CcCCCCCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEecc
Confidence            333333334677777778889988743222222222 6789999999853

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=89.85  E-value=10  Score=33.76  Aligned_cols=187  Identities=9%  Similarity=-0.046  Sum_probs=102.2

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      .++.||+..    .....++++++.......+......     ...+.++-..++.||+.-..       .+.++++++.
T Consensus        83 ~~~~ly~~D----~~~~~I~r~~~~g~~~~~~~~~~~~-----~p~glavd~~~g~ly~~d~~-------~~~I~~~~~d  146 (349)
T 3v64_C           83 RRELVFWSD----VTLDRILRANLNGSNVEEVVSTGLE-----SPGGLAVDWVHDKLYWTDSG-------TSRIEVANLD  146 (349)
T ss_dssp             TTTEEEEEE----TTTTEEEEEETTSCSCEEEECSSCS-----CCCEEEEETTTTEEEEEETT-------TTEEEEEETT
T ss_pred             cccEEEEEe----ccCCceEEEecCCCCceEEEeCCCC-----CccEEEEecCCCeEEEEcCC-------CCeEEEEcCC
Confidence            356677664    2233577788776654443221110     12344444347899988543       3479999987


Q ss_pred             CCceeecC--CCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeE-EE--ECCE
Q 040145          183 KNRWTVMN--KMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDA-AV--LDGK  255 (402)
Q Consensus       183 t~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~-~~--~~g~  255 (402)
                      ...-+.+.  .+..|   ..+++-  ++.||+.-...     ...++++++....-+.+..  ........ ++  .++.
T Consensus       147 G~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~--~~~~~PnGla~d~~~~~  216 (349)
T 3v64_C          147 GAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIAD--THLFWPNGLTIDYAGRR  216 (349)
T ss_dssp             SCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEESCC--SSCSCEEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEEEE--CCCCCcceEEEeCCCCE
Confidence            65433321  22222   233443  67899885321     3678999887554444321  11222233 33  2688


Q ss_pred             EEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCC
Q 040145          256 LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       256 ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      ||+.-..      .+.++++|+....-..+.. .....-...++.++.||+.... ...|.++|..+.
T Consensus       217 lY~aD~~------~~~I~~~~~dG~~~~~~~~-~~~~~P~giav~~~~ly~td~~-~~~V~~~~~~~G  276 (349)
T 3v64_C          217 MYWVDAK------HHVIERANLDGSHRKAVIS-QGLPHPFAITVFEDSLYWTDWH-TKSINSANKFTG  276 (349)
T ss_dssp             EEEEETT------TTEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTEEEEEETT-TTEEEEEETTTC
T ss_pred             EEEEECC------CCEEEEEeCCCCceEEEEe-CCCCCceEEEEECCEEEEecCC-CCeEEEEEccCC
Confidence            9998542      2479999987533222221 1111222234578999988543 678999986544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=89.68  E-value=8.4  Score=38.23  Aligned_cols=147  Identities=13%  Similarity=0.036  Sum_probs=78.8

Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCC--CcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCC
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNK--MITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPV  230 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~--~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~  230 (402)
                      .++.||+.-..       ...++++++....-+.+-.  +..|+   ++++  .++.||+.-..    . ...++++++.
T Consensus       463 ~~g~LY~tD~~-------~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~----~-~~~I~~~~~d  527 (699)
T 1n7d_A          463 IHSNIYWTDSV-------LGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG----T-PAKIKKGGLN  527 (699)
T ss_dssp             SSSBCEECCTT-------TSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS----S-SCCEEBCCSS
T ss_pred             eCCcEEEEecc-------CCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC----C-CCeEEEEeCC
Confidence            46788886422       3478999987665444321  22222   2233  35778876421    0 2467777765


Q ss_pred             CCcEEEcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccc-cCCCceeEEEECCEEEE
Q 040145          231 KGNWRTIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGL-REGWTGSSVVVYEHLFV  306 (402)
Q Consensus       231 t~~W~~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~l~~  306 (402)
                      ...-+.+...  .........+   +++||+.-..      .+.|++||+....-..+.... ........++.++.||+
T Consensus       528 G~~~~~l~~~--~l~~PnGlavd~~~~~LY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lyw  599 (699)
T 1n7d_A          528 GVDIYSLVTE--NIQWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFW  599 (699)
T ss_dssp             SCCCCEESCS--SCSSCCCEEECTTTCCEEEEETT------TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEE
T ss_pred             CCCeeEEEeC--CCCCccEEEEeccCCEEEEEecC------CCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEE
Confidence            4332222111  1112222333   5789997643      357999998754333332211 11111122456789998


Q ss_pred             EeccCCcEEEEEeCCCCce
Q 040145          307 VSELERMKLKVYDPSTDSW  325 (402)
Q Consensus       307 ~gg~~~~~~~~yd~~~~~W  325 (402)
                      ... ....|.++|+.+.+-
T Consensus       600 td~-~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          600 TDI-INEAIFSANRLTGSD  617 (699)
T ss_dssp             ECS-TTTCEEEEETTTEEE
T ss_pred             EeC-CCCeEEEEEccCCCc
Confidence            863 367899999876543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=88.89  E-value=17  Score=35.04  Aligned_cols=180  Identities=10%  Similarity=0.082  Sum_probs=93.5

Q ss_pred             EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee-cCC--C---cc
Q 040145          121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNK--M---IT  194 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~--~---~~  194 (402)
                      +..||..+.+...  .+....    ....++.+..++.+++.|+.+       ..+.+||..+++-.. +..  +   ..
T Consensus       172 v~lwd~~~~~~~~--~l~~H~----~~V~~v~fspdg~~las~s~D-------~~i~lwd~~~g~~~~~~~~~~~~~~~h  238 (611)
T 1nr0_A          172 VAIFEGPPFKFKS--TFGEHT----KFVHSVRYNPDGSLFASTGGD-------GTIVLYNGVDGTKTGVFEDDSLKNVAH  238 (611)
T ss_dssp             EEEEETTTBEEEE--EECCCS----SCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred             EEEEECCCCeEee--eecccc----CceEEEEECCCCCEEEEEECC-------CcEEEEECCCCcEeeeecccccccccc
Confidence            6677765544322  122111    223445555577888888763       268899988876432 211  0   11


Q ss_pred             cccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCC-CcceeEEEECCEEEEEcccccCCccCCcE
Q 040145          195 ARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTN-MASYDAAVLDGKLLVTEGWLWPFFVSPRG  272 (402)
Q Consensus       195 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-~~~~~~~~~~g~ly~~gG~~~~~~~~~~~  272 (402)
                      ...-.+++.. +++.++.|+.      -..+.++|..+......-..... ......+..++..++.++.+      ..+
T Consensus       239 ~~~V~~v~~spdg~~l~s~s~------D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d------~~i  306 (611)
T 1nr0_A          239 SGSVFGLTWSPDGTKIASASA------DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN------GFI  306 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT------CCE
T ss_pred             CCCEEEEEECCCCCEEEEEeC------CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC------CcE
Confidence            1112233333 5666777765      45788999988775432111111 11222334466655655543      257


Q ss_pred             EEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145          273 QVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETI  328 (402)
Q Consensus       273 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~  328 (402)
                      ..||+.+..-...-.  .....-..+.+  +++.++.|+. ...+.+||..+..-..+
T Consensus       307 ~~~~~~~~~~~~~~~--gh~~~v~~l~~spdg~~l~s~s~-D~~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          307 NFVNPELGSIDQVRY--GHNKAITALSSSADGKTLFSADA-EGHINSWDISTGISNRV  361 (611)
T ss_dssp             EEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCCEEEC
T ss_pred             EEEeCCCCCcceEEc--CCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCceeee
Confidence            788877654221111  11111112222  6777777765 45788999988765443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=88.79  E-value=12  Score=33.20  Aligned_cols=165  Identities=8%  Similarity=0.031  Sum_probs=75.0

Q ss_pred             EEEEccCC-EEEEEeCccCCCCCCCceEEEEECC-CCceeecCCCc--c-cccceEEEEE-CC-EEEEEcCCCCCCCCCC
Q 040145          150 CVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQ-KNRWTVMNKMI--T-ARSFFASGVI-GG-MIYVAGGSSADLFELD  222 (402)
Q Consensus       150 ~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~-t~~W~~~~~~~--~-~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~  222 (402)
                      .+++..++ .||+....       .+.+.+||.. +++.+.+..+.  . ......++.. ++ .+|+.+..      ..
T Consensus       149 ~~~~spdG~~l~~~~~~-------~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~------~~  215 (365)
T 1jof_A          149 GMVFDPTETYLYSADLT-------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA------GN  215 (365)
T ss_dssp             EEEECTTSSEEEEEETT-------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT------TT
T ss_pred             EEEECCCCCEEEEEcCC-------CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC------CC
Confidence            33443455 56665321       2479999988 77665433222  1 1112223333 34 67776532      23


Q ss_pred             eeEEE--cCCCCcEE----EcCCCCCCC---c-------ceeEEE-E--CCE-EEEEcccccCCccCCcEEEEeCC-CCC
Q 040145          223 SAEVL--DPVKGNWR----TIASMGTNM---A-------SYDAAV-L--DGK-LLVTEGWLWPFFVSPRGQVYDPS-TDN  281 (402)
Q Consensus       223 ~~~~y--d~~t~~W~----~~~~~~~~~---~-------~~~~~~-~--~g~-ly~~gG~~~~~~~~~~~~~yd~~-~~~  281 (402)
                      .+.+|  |..+++..    .+..++...   .       ....+. +  +|+ ||+.. ..........+.+||+. +++
T Consensus       216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~-~~~~~~~~~~i~v~~~~~~g~  294 (365)
T 1jof_A          216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS-RANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE-EESSTTSCCEEEEEEECTTSC
T ss_pred             eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC-CCCCCCCCCeEEEEEECCCCC
Confidence            45555  55566543    344444321   1       223333 3  565 55443 22110011267888875 565


Q ss_pred             eeeccc--c-ccCCCceeEEEE---CCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145          282 WESMAV--G-LREGWTGSSVVV---YEHLFVVSELERMKLKVYDPSTDSWETI  328 (402)
Q Consensus       282 W~~~~~--~-~~~~~~~~~~~~---~~~l~~~gg~~~~~~~~yd~~~~~W~~~  328 (402)
                      ...+..  . ....-...+..-   +|+.+++++.+.+.+.+|+.+.+.-+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l~~~  347 (365)
T 1jof_A          295 IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRV  347 (365)
T ss_dssp             EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEE
T ss_pred             EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhCcee
Confidence            543211  0 111111122233   4554445554456777777765543333

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=88.68  E-value=18  Score=34.94  Aligned_cols=185  Identities=11%  Similarity=0.074  Sum_probs=92.5

Q ss_pred             eEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccc-ccceEEEEE-CCEEEEEcCCCCCCCCCCeeE
Q 040145          149 RCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITA-RSFFASGVI-GGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       149 ~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      .++.+..++ ..++.|+.+       ..+.+||..+.+...  .+... ..-.+++.. ++++++.|+.      -..+.
T Consensus       151 ~~v~f~p~~~~~l~s~s~D-------~~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~las~s~------D~~i~  215 (611)
T 1nr0_A          151 NSVDFKPSRPFRIISGSDD-------NTVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGG------DGTIV  215 (611)
T ss_dssp             EEEEECSSSSCEEEEEETT-------SCEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEET------TSCEE
T ss_pred             eEEEECCCCCeEEEEEeCC-------CeEEEEECCCCeEee--eeccccCceEEEEECCCCCEEEEEEC------CCcEE
Confidence            344443344 356777653       268889976654322  12111 112233332 5677777776      34688


Q ss_pred             EEcCCCCcEEE-cCCC--C--CCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc-cccCCCceeE
Q 040145          226 VLDPVKGNWRT-IASM--G--TNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV-GLREGWTGSS  297 (402)
Q Consensus       226 ~yd~~t~~W~~-~~~~--~--~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~  297 (402)
                      +||..++.-.. +...  .  ........+.+  +|+.++.|+.+      ..+..+|+.+.+....-. ..........
T Consensus       216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D------~~v~lWd~~~~~~~~~~~~~~~~~~~~~~  289 (611)
T 1nr0_A          216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD------KTIKIWNVATLKVEKTIPVGTRIEDQQLG  289 (611)
T ss_dssp             EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred             EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC------CeEEEEeCCCCceeeeecCCCCccceeEE
Confidence            89988776432 2110  0  11111222333  67777777753      368899998776543211 1011111122


Q ss_pred             EEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCcee
Q 040145          298 VVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHV  359 (402)
Q Consensus       298 ~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~  359 (402)
                      +..++..++.++. ...+..||+.+..-....   .... ..-.+++ ..+++.++.|+.++.
T Consensus       290 ~~~~~~~l~s~s~-d~~i~~~~~~~~~~~~~~---~gh~-~~v~~l~~spdg~~l~s~s~D~~  347 (611)
T 1nr0_A          290 IIWTKQALVSISA-NGFINFVNPELGSIDQVR---YGHN-KAITALSSSADGKTLFSADAEGH  347 (611)
T ss_dssp             EEECSSCEEEEET-TCCEEEEETTTTEEEEEE---CCCS-SCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEcCCEEEEEeC-CCcEEEEeCCCCCcceEE---cCCC-CCEEEEEEeCCCCEEEEEeCCCc
Confidence            4456666666655 456888888776432221   1111 1111222 346777777776543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=88.60  E-value=13  Score=33.21  Aligned_cols=119  Identities=13%  Similarity=0.077  Sum_probs=59.5

Q ss_pred             CCeEEEEEEe-CCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCC--CCCCceEEEEE
Q 040145          104 DPWLFVFAFH-KCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV--DCPLDLVLKYE  180 (402)
Q Consensus       104 ~~~l~~~gg~-~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~--~~~~~~~~~~d  180 (402)
                      ...+|+.... .......+++||+.+.+-..  .++...     ..+.+....+..+|+..-.....  ....+.+.+||
T Consensus        15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~--~i~~g~-----~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d   87 (361)
T 2oiz_A           15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLG--MVPTAF-----NGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD   87 (361)
T ss_dssp             GGEEEEEECCGGGGGGCEEEEEETTTCCEEE--EEECCE-----EEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred             CCEEEEECCCCCccccCeEEEEECCCCeEEE--EecCCC-----CCceEECCCCCEEEEEEecccccccCCCCCEEEEEE
Confidence            4567777422 11223468899988876532  222111     11333333345788875321100  01234699999


Q ss_pred             CCCCcee-ecCCCc----ccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145          181 MQKNRWT-VMNKMI----TARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNW  234 (402)
Q Consensus       181 ~~t~~W~-~~~~~~----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  234 (402)
                      +.+.+-. .++-.+    .....+.+++.  +..+|+....     ..+.+.+||..+++-
T Consensus        88 ~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~-----~~~~v~v~d~~~~~~  143 (361)
T 2oiz_A           88 ADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS-----PATSIGIVDVAKGDY  143 (361)
T ss_dssp             TTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES-----SSEEEEEEETTTTEE
T ss_pred             CcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC-----CCCeEEEEECCCCcE
Confidence            9876532 222111    01122233332  4467776421     036788999988753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=88.50  E-value=14  Score=33.54  Aligned_cols=148  Identities=10%  Similarity=0.055  Sum_probs=76.6

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceee-cCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      ++.+++.|+.+       ..+.+||..+++-.. +...+....-.+++.. ++..++.|+.      ...+.+||..++.
T Consensus       181 ~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~  247 (437)
T 3gre_A          181 EKSLLVALTNL-------SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT------RGIIDIWDIRFNV  247 (437)
T ss_dssp             SCEEEEEEETT-------SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET------TSCEEEEETTTTE
T ss_pred             CCCEEEEEeCC-------CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC------CCeEEEEEcCCcc
Confidence            57777777752       379999998875322 2111111222222322 5677777775      3458899998865


Q ss_pred             EEEcCCCCCCCcceeEE-EE-----CCEEEEEcccccCCccCCcEEEEeCCCCCeee-ccc---------ccc-------
Q 040145          234 WRTIASMGTNMASYDAA-VL-----DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAV---------GLR-------  290 (402)
Q Consensus       234 W~~~~~~~~~~~~~~~~-~~-----~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~---------~~~-------  290 (402)
                      ....-..... .....+ ..     ++.+++.|+.+      ..+.+||..+++-.. +..         ..+       
T Consensus       248 ~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  320 (437)
T 3gre_A          248 LIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSK------TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEE  320 (437)
T ss_dssp             EEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTT------EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGG
T ss_pred             EEEEEecCCC-CceEEEEeccccCCCccEEEEEcCC------CcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccc
Confidence            4321111111 111111 11     34566666543      257888887654211 110         000       


Q ss_pred             --------CCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          291 --------EGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       291 --------~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                              .......+..++.+++.|+. ...+.+||..+.+
T Consensus       321 ~~~~~~~~~~~v~~l~~~~~~~l~s~~~-d~~i~~wd~~~~~  361 (437)
T 3gre_A          321 LNFCGIRSLNALSTISVSNDKILLTDEA-TSSIVMFSLNELS  361 (437)
T ss_dssp             CCCCCCCSGGGGCCEEEETTEEEEEEGG-GTEEEEEETTCGG
T ss_pred             ceecccccCCceEEEEECCceEEEecCC-CCeEEEEECCCcc
Confidence                    00011223347777777776 4589999988764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=87.51  E-value=16  Score=33.10  Aligned_cols=103  Identities=10%  Similarity=0.023  Sum_probs=52.2

Q ss_pred             CCEEEEEcCCCCCCCCCCeeEEEcCCCC--cEEEcCCCC----CCCcceeEEEE--CC-EEEEEcccccCCccCCcEEEE
Q 040145          205 GGMIYVAGGSSADLFELDSAEVLDPVKG--NWRTIASMG----TNMASYDAAVL--DG-KLLVTEGWLWPFFVSPRGQVY  275 (402)
Q Consensus       205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~----~~~~~~~~~~~--~g-~ly~~gG~~~~~~~~~~~~~y  275 (402)
                      ++++++.| .      ...+.+||..+.  .+..+...+    ........+.+  ++ .+++.|+.+      ..+..|
T Consensus       188 ~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i~iw  254 (447)
T 3dw8_B          188 DYETYLSA-D------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK------GTIRLC  254 (447)
T ss_dssp             TSSEEEEE-C------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT------SCEEEE
T ss_pred             CCCEEEEe-C------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC------CeEEEE
Confidence            45555555 3      356888998842  233221111    11122223333  44 677777753      368999


Q ss_pred             eCCCCCe-----eeccccccC-C--------CceeEEEE--CCEEEEEeccCCcEEEEEeCCC
Q 040145          276 DPSTDNW-----ESMAVGLRE-G--------WTGSSVVV--YEHLFVVSELERMKLKVYDPST  322 (402)
Q Consensus       276 d~~~~~W-----~~~~~~~~~-~--------~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~  322 (402)
                      |+.+.+-     ..+...... .        ..-..+.+  ++++++.|+.  ..+.+||..+
T Consensus       255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~  315 (447)
T 3dw8_B          255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNM  315 (447)
T ss_dssp             ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTC
T ss_pred             ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCC
Confidence            9987663     222211000 0        01112222  5666666654  7899999975

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=86.49  E-value=23  Score=33.78  Aligned_cols=141  Identities=15%  Similarity=0.135  Sum_probs=74.0

Q ss_pred             CceEEEEEC--CCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE
Q 040145          173 LDLVLKYEM--QKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA  250 (402)
Q Consensus       173 ~~~~~~~d~--~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~  250 (402)
                      ...++.++.  .... ..+......+ ..+...-++.++++.+.      ...+.+||..++.-+.+...+.   .....
T Consensus        89 ~~~l~~~~~~~~g~~-~~l~~~~~~~-~~~~s~dg~~~~~~s~~------~~~~~l~d~~~g~~~~l~~~~~---~~~~~  157 (582)
T 3o4h_A           89 QHALFKVNTSRPGEE-QRLEAVKPMR-ILSGVDTGEAVVFTGAT------EDRVALYALDGGGLRELARLPG---FGFVS  157 (582)
T ss_dssp             CEEEEEEETTSTTCC-EECTTSCSBE-EEEEEECSSCEEEEEEC------SSCEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred             ceEEEEEeccCCCcc-ccccCCCCce-eeeeCCCCCeEEEEecC------CCCceEEEccCCcEEEeecCCC---ceEEE
Confidence            346777877  4332 2333322222 12222234445555443      2334588998887666643332   22223


Q ss_pred             EECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCC-cEEEEEeCCCCceee
Q 040145          251 VLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELER-MKLKVYDPSTDSWET  327 (402)
Q Consensus       251 ~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~-~~~~~yd~~~~~W~~  327 (402)
                      .-+|+..++++......  ..++.+|+.++++..+... ..........-+|+.++.+..++ ..++++|.++.+...
T Consensus       158 spDG~~la~~~~~~~~~--~~i~~~d~~~g~~~~l~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~  232 (582)
T 3o4h_A          158 DIRGDLIAGLGFFGGGR--VSLFTSNLSSGGLRVFDSG-EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVED  232 (582)
T ss_dssp             EEETTEEEEEEEEETTE--EEEEEEETTTCCCEEECCS-SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEE
T ss_pred             CCCCCEEEEEEEcCCCC--eEEEEEcCCCCCceEeecC-CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEE
Confidence            34777666555432221  3589999999988766431 11111111223666555443322 489999999887773

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=86.48  E-value=19  Score=32.73  Aligned_cols=120  Identities=11%  Similarity=-0.077  Sum_probs=65.2

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCC--CCCceEEEEE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVD--CPLDLVLKYE  180 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~--~~~~~~~~~d  180 (402)
                      ...++|+...........+.++|+.+.+-...-+..  .    . .+.+....+..+|+.........  ...+.+.++|
T Consensus        43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG--~----~-P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--F----L-PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--S----S-CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC--C----C-CcEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            367899886432222457999999988754322222  1    1 13444434556888753210000  0235799999


Q ss_pred             CCCCceeecCCCcc------cccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145          181 MQKNRWTVMNKMIT------ARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNW  234 (402)
Q Consensus       181 ~~t~~W~~~~~~~~------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  234 (402)
                      +.|++-..--+++.      ....+.+++.  +..+|+....     ..+.+.++|..+++-
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~-----~~~~VsVID~~t~~v  172 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-----PAPAVGVVDLEGKAF  172 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-----SSCEEEEEETTTTEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC-----CCCeEEEEECCCCcE
Confidence            99987433111111      1123333433  4578887431     146789999999864

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=86.48  E-value=21  Score=33.22  Aligned_cols=124  Identities=13%  Similarity=0.149  Sum_probs=60.1

Q ss_pred             CCCCCeEEEEEEeC---CCCceeEEEeecCC--CcEE---eCCCCCCCCCCCCC-CceEEEE---------ccCCEEEEE
Q 040145          101 GFKDPWLFVFAFHK---CTGKIQWQVLDLTH--YCWH---TIPAMPCKDKVCPH-GFRCVSI---------PREGTLFVC  162 (402)
Q Consensus       101 ~~~~~~l~~~gg~~---~~~~~~~~~~d~~~--~~W~---~l~~~~~~~~~~~~-~~~~~~~---------~~~~~i~v~  162 (402)
                      +..+..+|+.....   ......+...|...  .+..   ..-+||...-..+| ++.+++.         .....+|+-
T Consensus        22 ~~~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~  101 (462)
T 2ece_A           22 APPEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVP  101 (462)
T ss_dssp             SCCCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEE
T ss_pred             CCcceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEc
Confidence            56788999997763   22333455555553  3321   11123321111112 2211211         124466666


Q ss_pred             eCccCCCCCCCceEEEEECCCC----ceee-cC--CC--ccc-ccceEEEEECCEEEEE--cCCCCCCCCCCeeEEEcCC
Q 040145          163 GGMVSDVDCPLDLVLKYEMQKN----RWTV-MN--KM--ITA-RSFFASGVIGGMIYVA--GGSSADLFELDSAEVLDPV  230 (402)
Q Consensus       163 GG~~~~~~~~~~~~~~~d~~t~----~W~~-~~--~~--~~~-r~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~~yd~~  230 (402)
                      |..       ++.++++|..++    +-.+ +.  .+  ... ...|++....+.|||.  |+..+.  ....+.++|.+
T Consensus       102 ~l~-------s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~--~~g~v~vlD~~  172 (462)
T 2ece_A          102 GLR-------SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGE--GPGGILMLDHY  172 (462)
T ss_dssp             BTT-------TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSC--SCCEEEEECTT
T ss_pred             cCC-------CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCC--CCCeEEEEECC
Confidence            553       468999999876    2211 11  01  111 1234444443337773  332222  25789999999


Q ss_pred             CCc
Q 040145          231 KGN  233 (402)
Q Consensus       231 t~~  233 (402)
                      |.+
T Consensus       173 T~~  175 (462)
T 2ece_A          173 SFE  175 (462)
T ss_dssp             TCC
T ss_pred             CCe
Confidence            876

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=86.34  E-value=28  Score=36.74  Aligned_cols=181  Identities=15%  Similarity=0.149  Sum_probs=95.5

Q ss_pred             ceEEEEECCCCceeecCCCcccccc--eEEEEE--C---CEEEEEcCC----CCCCCCCCeeEEEcCCCCcEEEcCCCCC
Q 040145          174 DLVLKYEMQKNRWTVMNKMITARSF--FASGVI--G---GMIYVAGGS----SADLFELDSAEVLDPVKGNWRTIASMGT  242 (402)
Q Consensus       174 ~~~~~~d~~t~~W~~~~~~~~~r~~--~~~~~~--~---~~iyv~GG~----~~~~~~~~~~~~yd~~t~~W~~~~~~~~  242 (402)
                      +.+.++||.+  |+.+......-..  .+++.+  .   ...+++|-.    .+.......+.+|+...++.+.+.....
T Consensus       807 s~i~lidp~t--~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v  884 (1158)
T 3ei3_A          807 HNLLIIDQHT--FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEV  884 (1158)
T ss_dssp             EEEEEEETTT--CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEeCCC--CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEc
Confidence            4567788865  5554332222111  222222  1   245566642    1122235668888887666666654444


Q ss_pred             CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecccc-ccCCCceeE-EEECCEEEEEeccCCcEEEEEeC
Q 040145          243 NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG-LREGWTGSS-VVVYEHLFVVSELERMKLKVYDP  320 (402)
Q Consensus       243 ~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~  320 (402)
                      ...-.+.+.++|+|.+.-|        +.+.+||...++--..... .+. -.... .+.++.|++-.-..+-.+..|+.
T Consensus       885 ~g~v~al~~~~g~Lla~ig--------~~l~vy~l~~~~~L~~~~~~~~~-i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~  955 (1158)
T 3ei3_A          885 KGAVYSMVEFNGKLLASIN--------STVRLYEWTTEKELRTECNHYNN-IMALYLKTKGDFILVGDLMRSVLLLAYKP  955 (1158)
T ss_dssp             SSCEEEEEEETTEEEEEET--------TEEEEEEECTTSCEEEEEEECCC-SCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred             CCcCEEEeeeCCEEEEEcC--------CEEEEEECCCCceEEEEeecccc-EEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence            3344556677897766544        3788999876653221110 111 01111 24577766544444667888999


Q ss_pred             CCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEecccc
Q 040145          321 STDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTS  370 (402)
Q Consensus       321 ~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~  370 (402)
                      ..++-..++.-..|   ++..++...++. .++|+ ++....-+..|++.
T Consensus       956 ~~~~L~~~a~D~~~---~~vta~~~ld~~-t~l~a-D~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A          956 MEGNFEEIARDFNP---NWMSAVEILDDD-NFLGA-ENAFNLFVCQKDSA 1000 (1158)
T ss_dssp             TTTEEEEEEECCSC---BCEEEEEEEETT-EEEEE-ETTSEEEEEEECTT
T ss_pred             CCCeEEEEEeeccc---ccEEEEEEEccC-cEEEE-cCCCcEEEEecCCC
Confidence            98888888743444   444444444333 34444 23333556666663

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=86.16  E-value=30  Score=34.81  Aligned_cols=152  Identities=11%  Similarity=0.002  Sum_probs=86.3

Q ss_pred             ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecC--CCcccccceEEEE--ECCEEEEEcCCCCCCCCCCe
Q 040145          148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMN--KMITARSFFASGV--IGGMIYVAGGSSADLFELDS  223 (402)
Q Consensus       148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~  223 (402)
                      .+.++-..++.||+.-..       ...|+++++....-+.+.  .+..|   .++++  .++.||+.--.    . ...
T Consensus       474 ~GLAvD~~~~~LY~tD~~-------~~~I~v~~ldG~~~~~l~~~~l~~P---~gIaVDp~~g~LYwtD~g----~-~~~  538 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSV-------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG----T-PAK  538 (791)
T ss_dssp             CEEEEETTTTEEEEEETT-------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS----S-SCE
T ss_pred             ceeeeeecCCcEEEEecC-------CCeEEEEeCCCCeEEEEEeCCCCCc---ceEEEecCCCCEEEecCC----C-CCe
Confidence            345554457799998543       448999998766544432  22222   24444  35799998521    0 357


Q ss_pred             eEEEcCCCCcEEEcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCeeecccc-ccCCCceeEEE
Q 040145          224 AEVLDPVKGNWRTIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG-LREGWTGSSVV  299 (402)
Q Consensus       224 ~~~yd~~t~~W~~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~~~  299 (402)
                      ++++++....-+.+..  .......+.++   +++||+.-..      .+.|+++|+....-..+... .........++
T Consensus       539 I~~~~~dG~~~~~lv~--~~l~~P~GLavD~~~~~LYwaD~~------~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav  610 (791)
T 3m0c_C          539 IKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAV  610 (791)
T ss_dssp             EEEEETTSCCEEEEEC--SSCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECTTTTSSEEEEEE
T ss_pred             EEEEecCCCceEEEEe--CCCCCceEEEEecCCCeEEEEeCC------CCcEEEEecCCCceEEEecCCCccCCCCEEEE
Confidence            8888887554443321  11122333333   6899998542      35799999865443333221 11111112356


Q ss_pred             ECCEEEEEeccCCcEEEEEeCCCC
Q 040145          300 VYEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       300 ~~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                      .+++||+.... ...|+++|..+.
T Consensus       611 ~~~~lYwtD~~-~~~I~~~dk~tG  633 (791)
T 3m0c_C          611 FEDKVFWTDII-NEAIFSANRLTG  633 (791)
T ss_dssp             ETTEEEEEETT-TTEEEEEETTTC
T ss_pred             eCCEEEEEECC-CCEEEEEeCCCC
Confidence            78999998644 668888886544

>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}

Probab=86.13  E-value=12  Score=30.26  Aligned_cols=144  Identities=18%  Similarity=0.168  Sum_probs=75.8

Q ss_pred             ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC---Cceeec----CCCcccccceEEEEECCEEEEEcCCCCCCCC
Q 040145          148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK---NRWTVM----NKMITARSFFASGVIGGMIYVAGGSSADLFE  220 (402)
Q Consensus       148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t---~~W~~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~  220 (402)
                      +.++.. ..+++|++-|.         .+|+++...   +-=+.+    +.+|. ....+....++++|++-|       
T Consensus         8 ~DA~~~-~~g~~~fFkg~---------~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg-------   69 (196)
T 3c7x_A            8 FDTVAM-LRGEMFVFKER---------WFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG-------   69 (196)
T ss_dssp             CSEEEE-ETTEEEEEETT---------EEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET-------
T ss_pred             ccEEEE-cCCEEEEEECC---------EEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC-------
Confidence            344433 48999999875         677876432   100111    12332 111111124678898876       


Q ss_pred             CCeeEEEcCCCCcE---EEcCC----CCCCCcceeEEE-E--CCEEEEEcccccCCccCCcEEEEeCCCCCeee-----c
Q 040145          221 LDSAEVLDPVKGNW---RTIAS----MGTNMASYDAAV-L--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-----M  285 (402)
Q Consensus       221 ~~~~~~yd~~t~~W---~~~~~----~~~~~~~~~~~~-~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-----~  285 (402)
                       +..+.|+..+...   +.+..    +|.  ....++. .  ++++|++-|.        ..++||..+++-..     +
T Consensus        70 -~~yw~~~~~~~~~gyPk~I~~~~~glP~--~~IDAA~~~~~~g~~yfFkG~--------~yw~yd~~~~~v~~gyPk~i  138 (196)
T 3c7x_A           70 -DKHWVFDEASLEPGYPKHIKELGRGLPT--DKIDAALFWMPNGKTYFFRGN--------KYYRFNEELRAVDSEYPKNI  138 (196)
T ss_dssp             -TEEEEEETTEECTTCSEEGGGTCBSCCS--SCCSEEEEETTTTEEEEEETT--------EEEEEETTTTEECTTCSEEG
T ss_pred             -CEEEEEeCCcccCCCCeEhhhcCCCCCC--CcccEEEEEccCCEEEEEECC--------EEEEEeCCcccccCCCCccH
Confidence             3467777542110   12222    332  1233333 2  6899999773        67899987653221     1


Q ss_pred             cc--cccCCCceeEEEE-CC-EEEEEeccCCcEEEEEeCCCCc
Q 040145          286 AV--GLREGWTGSSVVV-YE-HLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       286 ~~--~~~~~~~~~~~~~-~~-~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      ..  .+|.. ..++... ++ ++|.+-|.   ..++||..++.
T Consensus       139 ~~~~gip~~-idaAf~~~~~~~~YfFkg~---~y~r~d~~~~~  177 (196)
T 3c7x_A          139 KVWEGIPES-PRGSFMGSDEVFTYFYKGN---KYWKFNNQKLK  177 (196)
T ss_dssp             GGSBTCCSS-CSEEEECTTSSEEEEEETT---EEEEEETTTTE
T ss_pred             HHCCCcCCC-cceeEEecCCCEEEEEECC---EEEEEECCcce
Confidence            11  11111 1222223 44 89999665   79999998763

>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A

Probab=86.07  E-value=19  Score=32.41  Aligned_cols=149  Identities=10%  Similarity=0.069  Sum_probs=79.4

Q ss_pred             CceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCce--eec----CCCcccccceEEEE--ECCEEEEEcCCCCCC
Q 040145          147 GFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRW--TVM----NKMITARSFFASGV--IGGMIYVAGGSSADL  218 (402)
Q Consensus       147 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W--~~~----~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~  218 (402)
                      .+.++.. ..+++|++=|.         .+|+++.....-  ..+    +.+|. ... ++..  .++++|++-|.    
T Consensus       182 ~fDAv~~-~~g~~~fFkg~---------~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iD-Aa~~~~~~g~~~fFkg~----  245 (365)
T 3ba0_A          182 SFDAVTT-VGNKIFFFKDR---------FFWLKVSERPKTSVNLISSLWPTLPS-GIE-AAYEIEARNQVFLFKDD----  245 (365)
T ss_dssp             CCSCEEE-ETTEEEEEETT---------EEEECCSSCCCCCEEEHHHHCSSCCS-SCC-EEEEEGGGTEEEEEETT----
T ss_pred             ceeeEEE-cCCeEEEEeCC---------EEEEEcCCCccCCccchhhhccCCCC-Ccc-EEEEecCCCEEEEEeCC----
Confidence            3444443 38899999765         577776544211  011    22331 111 2222  27899998763    


Q ss_pred             CCCCeeEEEcCCCCc--E-EEcCC--CCCCCcceeEEE-E--CCEEEEEcccccCCccCCcEEEEeCCCCCeee-----c
Q 040145          219 FELDSAEVLDPVKGN--W-RTIAS--MGTNMASYDAAV-L--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-----M  285 (402)
Q Consensus       219 ~~~~~~~~yd~~t~~--W-~~~~~--~~~~~~~~~~~~-~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-----~  285 (402)
                          ..++|+..+..  + +.+..  +|.......+++ .  ++++|+|-|.        ..++||..+++-..     +
T Consensus       246 ----~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG~--------~yw~yd~~~~~v~~gyPk~I  313 (365)
T 3ba0_A          246 ----KYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDN--------QYWRYDERRQMMDPGYPKLI  313 (365)
T ss_dssp             ----EEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCCCCH
T ss_pred             ----EEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEECC--------EEEEEeCCcceecCCCCcch
Confidence                45666643211  1 22332  233212233333 3  5899999773        68999987654221     1


Q ss_pred             cc---cccCCCceeEEEE-CCEEEEEeccCCcEEEEEeCCCCceee
Q 040145          286 AV---GLREGWTGSSVVV-YEHLFVVSELERMKLKVYDPSTDSWET  327 (402)
Q Consensus       286 ~~---~~~~~~~~~~~~~-~~~l~~~gg~~~~~~~~yd~~~~~W~~  327 (402)
                      ..   ..+. ...++... ++++|.|-|.   ..|+||..+++-..
T Consensus       314 ~~~f~g~p~-~iDaA~~~~~g~~YfFkg~---~ywr~d~~~~~v~~  355 (365)
T 3ba0_A          314 TKNFQGIGP-KIDAVFYSKNKYYYFFQGS---NQFEYDFLLQRITK  355 (365)
T ss_dssp             HHHSTTCCS-SCSEEEEETTTEEEEEETT---EEEEEETTTTEEEE
T ss_pred             hhcCCCCCC-ccceeeEecCCcEEEEeCC---EEEEEECCccEEec
Confidence            10   1111 12223334 8999999765   79999998765443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=85.85  E-value=16  Score=31.23  Aligned_cols=135  Identities=9%  Similarity=-0.013  Sum_probs=68.9

Q ss_pred             eEEEEECCCCceeecCCCccc-ccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145          175 LVLKYEMQKNRWTVMNKMITA-RSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL  252 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~  252 (402)
                      .+.+||..|++-..+-.+... ..-.+++.. +++.++.|+.      -..+.+||..+++-...  +............
T Consensus        46 tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~------Dg~v~iw~~~~~~~~~~--~~~h~~~~~~~~~  117 (318)
T 4ggc_A           46 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS------SAEVQLWDVQQQKRLRN--MTSHSARVGSLSW  117 (318)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEE--EECCSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC------CCcEEEeecCCceeEEE--ecCccceEEEeec
Confidence            799999999876543222222 112233332 5677777776      45688999988763322  1111122233444


Q ss_pred             CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      ++.+.+.|+..      ..+..++..+.................. ...++..++.|+. ...+.+||..+.+
T Consensus       118 ~~~~l~s~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~  183 (318)
T 4ggc_A          118 NSYILSSGSRS------GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN-DNLVNVWPSAPGE  183 (318)
T ss_dssp             ETTEEEEEETT------SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-TSCEEEEESSCBT
T ss_pred             CCCEEEEEecC------CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec-CcceeEEECCCCc
Confidence            56666666542      2455555554433221110111111111 2235666666665 4578889987643

>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1

Probab=85.72  E-value=14  Score=30.55  Aligned_cols=118  Identities=14%  Similarity=0.201  Sum_probs=64.5

Q ss_pred             ECCEEEEEcccccCCccCCcEEEEeCCCCCee--eccc---cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCcee
Q 040145          252 LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE--SMAV---GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWE  326 (402)
Q Consensus       252 ~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~--~~~~---~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~  326 (402)
                      .+|++|+|-|.        ..++++.....+.  .+..   .+|. ...++...++++|+|-|.   .+|+|+..++ .+
T Consensus        27 ~~g~~yfFkg~--------~~Wr~~~~~~~~~p~~Is~~wpgLP~-~IDAA~~~~~~~yfFkG~---~yw~~~~~~~-~~   93 (219)
T 1hxn_A           27 NHGATYVFSGS--------HYWRLDTNRDGWHSWPIAHQWPQGPS-TVDAAFSWEDKLYLIQDT---KVYVFLTKGG-YT   93 (219)
T ss_dssp             TTSCEEEEETT--------EEEESSSSSCTTCCEEGGGTCTTSCS-SCSEEEEETTEEEEEETT---EEEEEECSSS-CE
T ss_pred             CCCcEEEEeCC--------EEEEEcCCCCCCCceEhhhhccCCCC-CccEEEEECCcEEEecCC---EEEEEeCCCC-ce
Confidence            47999999773        4566664432221  1111   1222 222343458999999765   7999987532 12


Q ss_pred             ecCC--------CCCCcc--c-cCCeEEEE--eCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeC-CCCCCCc
Q 040145          327 TIEG--------PPLPEQ--I-CKPFAVNA--CDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDA-PDNFSDL  392 (402)
Q Consensus       327 ~~~~--------~~~p~~--~-~~~~~~~~--~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~-~~~~~~~  392 (402)
                      ...+        ..+|..  . +.. +++.  .++++|++-|.      ..|.||+...   .+..|...+. |....++
T Consensus        94 ~~~gyPk~i~~~~G~p~~~~~~~ID-AA~~~~~~gk~yfFkG~------~ywr~d~~~~---P~~i~~~~~g~p~~vdAa  163 (219)
T 1hxn_A           94 LVNGYPKRLEKELGSPPVISLEAVD-AAFVCPGSSRLHIMAGR------RLWWLDLKSG---AQATWTELPWPHEKVDGA  163 (219)
T ss_dssp             ECTTCCEEHHHHHCCCSSCCCSCCC-EEECCTTCCEEEEEETT------EEEEEEGGGG---GGCCCEEECCSCSCCSEE
T ss_pred             ecCCCCeehhhccCCCCcccccccc-eeEEecCCCEEEEEeCC------EEEEEeCCCC---ceEhhhcCCCCCCCcCEE
Confidence            2221        124432  1 122 3332  36899999983      4688886443   5567766555 4444443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=85.47  E-value=22  Score=32.71  Aligned_cols=79  Identities=10%  Similarity=0.034  Sum_probs=42.0

Q ss_pred             CCCCCeEEEEEEeC-----CCCceeEEEeecCCCcEEe-CCCCCCCCCC--CCCCceEEEEccCCEEEEEeCccCCCCCC
Q 040145          101 GFKDPWLFVFAFHK-----CTGKIQWQVLDLTHYCWHT-IPAMPCKDKV--CPHGFRCVSIPREGTLFVCGGMVSDVDCP  172 (402)
Q Consensus       101 ~~~~~~l~~~gg~~-----~~~~~~~~~~d~~~~~W~~-l~~~~~~~~~--~~~~~~~~~~~~~~~i~v~GG~~~~~~~~  172 (402)
                      ...+..+|+.....     ......+.++|+.+.+-.. ++ ++.+.+.  ...-++......+..+|+....      .
T Consensus       126 SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~------~  198 (426)
T 3c75_H          126 AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKNLLFYQFS------P  198 (426)
T ss_dssp             CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSEEEEEECS------S
T ss_pred             CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCEEEEEecC------C
Confidence            34466788774210     0123468899999887432 21 2100000  0011333444345688887421      2


Q ss_pred             CceEEEEECCCCce
Q 040145          173 LDLVLKYEMQKNRW  186 (402)
Q Consensus       173 ~~~~~~~d~~t~~W  186 (402)
                      .+.+.++|..+++-
T Consensus       199 ~~~VsVID~~t~kv  212 (426)
T 3c75_H          199 APAVGVVDLEGKTF  212 (426)
T ss_dssp             SCEEEEEETTTTEE
T ss_pred             CCeEEEEECCCCeE
Confidence            45799999999864

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=85.46  E-value=20  Score=32.20  Aligned_cols=117  Identities=9%  Similarity=-0.066  Sum_probs=59.3

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCC--CCCceEEEEEC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVD--CPLDLVLKYEM  181 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~--~~~~~~~~~d~  181 (402)
                      ..++|+...........+.+||+.+.+-.  ..++...    .. +.+....+..+|+..-......  ...+.+.+||+
T Consensus        32 ~~~~yv~~~~~~~~~~~v~v~D~~t~~~~--~~i~~g~----~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           32 GRRSYINLPAHHSAIIQQWVLDAGSGSIL--GHVNGGF----LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             CCEEEEeCCcccCCccEEEEEECCCCeEE--EEecCCC----CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            46688875311111116899999887643  2333221    11 3344334567888753211100  12457889999


Q ss_pred             CCCceee-cCCCc-ccc-----cceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145          182 QKNRWTV-MNKMI-TAR-----SFFASGV--IGGMIYVAGGSSADLFELDSAEVLDPVKGNW  234 (402)
Q Consensus       182 ~t~~W~~-~~~~~-~~r-----~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  234 (402)
                      .|.+-.. ++ ++ .+|     ....++.  -+..+|+.....     .+.+.++| .+++-
T Consensus       105 ~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~-----~~~v~viD-~t~~~  159 (373)
T 2mad_H          105 VTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNADLLFFQFAA-----GPAVGLVV-QGGSS  159 (373)
T ss_pred             CCCcEEEEEE-CCCccccccCCCccceEECCCCCEEEEEecCC-----CCeEEEEE-CCCCE
Confidence            8865322 22 21 111     1123333  245677764210     35688999 88764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=84.82  E-value=20  Score=31.68  Aligned_cols=234  Identities=13%  Similarity=0.097  Sum_probs=113.5

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCC---CCCCCCCceEEEE--ccCCEEEEEeCc--cC----CCCCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCK---DKVCPHGFRCVSI--PREGTLFVCGGM--VS----DVDCP  172 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~---~~~~~~~~~~~~~--~~~~~i~v~GG~--~~----~~~~~  172 (402)
                      ++.+|+..-.    .-.+..+|+..+.-..+ ..+..   .....+..+....  -..+.|+++.-.  ..    .....
T Consensus        24 ~g~~~vs~l~----~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g   98 (334)
T 2p9w_A           24 RQVFYQSNLY----KGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHG   98 (334)
T ss_dssp             TTEEEEEETT----TTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSS
T ss_pred             CCEEEEEecc----CCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCC
Confidence            3556654322    23478899986654444 23310   0000011233331  135788885221  00    00123


Q ss_pred             CceEEEEECC---CCc--eee-cCCCccc-------ccc-eEEEEE--CCEEEEEcCCCCCCCCC-CeeEEEcCCCCc--
Q 040145          173 LDLVLKYEMQ---KNR--WTV-MNKMITA-------RSF-FASGVI--GGMIYVAGGSSADLFEL-DSAEVLDPVKGN--  233 (402)
Q Consensus       173 ~~~~~~~d~~---t~~--W~~-~~~~~~~-------r~~-~~~~~~--~~~iyv~GG~~~~~~~~-~~~~~yd~~t~~--  233 (402)
                      ...+.+||+.   |++  |.. ++.....       +.. ..-.++  +|.+||.+..      . ..++.+|+....  
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~------~~~~I~rV~pdG~~~~  172 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL------GMPAIARVSADGKTVS  172 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE------SSCEEEEECTTSCCEE
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC------CCCeEEEEeCCCCEEe
Confidence            5679999988   654  432 2221111       221 222223  5799998764      3 668999997543  


Q ss_pred             -EEEcCCCCCCCcceeEEEE--CC-EEEEEcccccCCccCCcEEEEeCCCCCeeecccc------ccCCCcee-EEEECC
Q 040145          234 -WRTIASMGTNMASYDAAVL--DG-KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG------LREGWTGS-SVVVYE  302 (402)
Q Consensus       234 -W~~~~~~~~~~~~~~~~~~--~g-~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~------~~~~~~~~-~~~~~~  302 (402)
                       |-.-.+....+.+....++  +| .|++..+ .      ..+++||+.+....+++..      ....-.+. ..-.+|
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~------g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G  245 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-P------RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGN  245 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESS-S------SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETT
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcC-C------CeEEEEcCCCCcceeecccccCCcccccCcccccccccCC
Confidence             5432222334445544444  45 4555544 2      3689999885432123211      01111221 234789


Q ss_pred             EEEEEeccCCcEEEEEeCCCCceeecCCCC-CCc--cccCCeEEEE----eCCEEEEEecCc
Q 040145          303 HLFVVSELERMKLKVYDPSTDSWETIEGPP-LPE--QICKPFAVNA----CDCRVYVVGRNL  357 (402)
Q Consensus       303 ~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~-~p~--~~~~~~~~~~----~~~~i~v~GG~~  357 (402)
                      +++++.......+...+. .+ |....... .|.  ........+.    .+++||++.+..
T Consensus       246 ~vllV~~~~~~~~~l~S~-Dg-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~f  305 (334)
T 2p9w_A          246 ESVLVGARAPYAISFRSW-DN-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAFF  305 (334)
T ss_dssp             EEEEEEEETTEEEEEECS-ST-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECCG
T ss_pred             EEEEEEcCCCCEEEEECC-CC-cceeEEeeeecCccccCceeEEEEeccccCCeEEEEeeec
Confidence            986665543334444444 34 98654221 121  1122223333    678999998744

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=84.24  E-value=22  Score=31.48  Aligned_cols=182  Identities=10%  Similarity=0.012  Sum_probs=86.0

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      .+.+.+.++.+    ..+.++|..+++-...-..+       ....++.+ ..+.+++...         +.+.+||..+
T Consensus        70 ~~~~~~~~~~d----~~v~iWd~~~~~~~~~~~~~-------~~v~~v~~-~~~~~~~~~~---------~~i~i~d~~~  128 (355)
T 3vu4_A           70 TNYVAFVTGVK----EVVHIWDDVKKQDVSRIKVD-------APVKDLFL-SREFIVVSYG---------DVISVFKFGN  128 (355)
T ss_dssp             SSEEEEECSST----TEEEEEETTTTEEEEEEECS-------SCEEEEEE-CSSEEEEEET---------TEEEEEESST
T ss_pred             CCEEEEEECCc----cEEEEEECCCCcEEEEEECC-------CceEEEEE-cCCEEEEEEc---------CEEEEEECCC
Confidence            34454555332    25788898877643211111       11233333 2445554432         2689999887


Q ss_pred             CceeecCCCcccccceEEEEECCEEEEE-cCCCCCCCCCCeeEEEcCCCCc-EEE-------------cCCCCCCCccee
Q 040145          184 NRWTVMNKMITARSFFASGVIGGMIYVA-GGSSADLFELDSAEVLDPVKGN-WRT-------------IASMGTNMASYD  248 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~-GG~~~~~~~~~~~~~yd~~t~~-W~~-------------~~~~~~~~~~~~  248 (402)
                      +. +.+..+..+  ...++...+.+.+. |+.      ...+.+||..+.. +..             +..+........
T Consensus       129 ~~-~~~~~~~~~--~~~~~~s~~~la~~sg~~------~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~  199 (355)
T 3vu4_A          129 PW-KRITDDIRF--GGVCEFSNGLLVYSNEFN------LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK  199 (355)
T ss_dssp             TC-CBSSCCEEE--EEEEEEETTEEEEEESSC------TTCEEEEECCC------------------CCEEECCCSSCEE
T ss_pred             Cc-eeeEEeccC--CceEEEEccEEEEeCCCc------CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE
Confidence            61 122222221  11122223444444 443      3458889988653 110             111111112222


Q ss_pred             EEEE--CCEEEEEcccccCCccCCc-EEEEeCCCCCeee-ccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCC
Q 040145          249 AAVL--DGKLLVTEGWLWPFFVSPR-GQVYDPSTDNWES-MAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPST  322 (402)
Q Consensus       249 ~~~~--~g~ly~~gG~~~~~~~~~~-~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~  322 (402)
                      .+.+  +|.+++.|+.+      .. +..||..+++-.. +......... ..+.+  ++++++.|+. ...+.+||..+
T Consensus       200 ~~~~s~~g~~l~s~s~d------~~~v~iwd~~~~~~~~~~~~g~h~~~v-~~~~~s~~~~~l~s~s~-d~~v~iw~~~~  271 (355)
T 3vu4_A          200 MVRLNRKSDMVATCSQD------GTIIRVFKTEDGVLVREFRRGLDRADV-VDMKWSTDGSKLAVVSD-KWTLHVFEIFN  271 (355)
T ss_dssp             EEEECTTSSEEEEEETT------CSEEEEEETTTCCEEEEEECTTCCSCE-EEEEECTTSCEEEEEET-TCEEEEEESSC
T ss_pred             EEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEEcCCCCCcE-EEEEECCCCCEEEEEEC-CCEEEEEEccC
Confidence            3333  67777777754      35 8899998764321 1100011111 12223  6777777665 46788898865


Q ss_pred             C
Q 040145          323 D  323 (402)
Q Consensus       323 ~  323 (402)
                      .
T Consensus       272 ~  272 (355)
T 3vu4_A          272 D  272 (355)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=84.13  E-value=15  Score=38.32  Aligned_cols=99  Identities=12%  Similarity=-0.014  Sum_probs=56.8

Q ss_pred             CeeE-EEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEE
Q 040145          222 DSAE-VLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSV  298 (402)
Q Consensus       222 ~~~~-~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~  298 (402)
                      ..++ +||..++.-..+.  .. ........+  +|+.+++++..      ..+..+|+.+++-..+.............
T Consensus       358 ~~l~~~~d~~~~~~~~l~--~~-~~~~~~~~~SpDG~~la~~~~~------~~v~~~d~~tg~~~~~~~~~~~~v~~~~~  428 (1045)
T 1k32_A          358 GDFLGIYDYRTGKAEKFE--EN-LGNVFAMGVDRNGKFAVVANDR------FEIMTVDLETGKPTVIERSREAMITDFTI  428 (1045)
T ss_dssp             EEEEEEEETTTCCEEECC--CC-CCSEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred             CceEEEEECCCCCceEec--CC-ccceeeeEECCCCCEEEEECCC------CeEEEEECCCCceEEeccCCCCCccceEE
Confidence            4678 8899887766554  11 112222222  67766665532      37899999988766554212111122222


Q ss_pred             EECCEEEEEeccC---------CcEEEEEeCCCCceeecC
Q 040145          299 VVYEHLFVVSELE---------RMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       299 ~~~~~l~~~gg~~---------~~~~~~yd~~~~~W~~~~  329 (402)
                      .-+|+.+++++..         ...+++||..+.+...+.
T Consensus       429 SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~  468 (1045)
T 1k32_A          429 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT  468 (1045)
T ss_dssp             CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred             CCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEee
Confidence            3367766665442         258999999987755443

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=83.90  E-value=27  Score=32.40  Aligned_cols=144  Identities=13%  Similarity=0.126  Sum_probs=77.5

Q ss_pred             ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCC---------ceeecCCCcccccceEEEE--ECCEEEEEcCCCC
Q 040145          148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKN---------RWTVMNKMITARSFFASGV--IGGMIYVAGGSSA  216 (402)
Q Consensus       148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~---------~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~  216 (402)
                      +.++.. ..+++|+|-|.         .+|+++....         .|..+|   .. .. ++..  .++++|++-|.  
T Consensus       265 fDAi~~-~~ge~y~Fkg~---------~~wr~~~~~~~~~p~~I~~~Wp~LP---~~-iD-Aa~~~~~~g~~~fFKg~--  327 (450)
T 1su3_A          265 FDAITT-IRGEVMFFKDR---------FYMRTNPFYPEVELNFISVFWPQLP---NG-LE-AAYEFADRDEVRFFKGN--  327 (450)
T ss_dssp             CSEEEE-ETTEEEEEETT---------EEEECCTTSSSCEEEEGGGTCTTSC---SS-CC-EEEEEGGGTEEEEEETT--
T ss_pred             cceEEe-cCCeEEEEeCC---------EEEEEcCCCCcccceehhHhccCCC---CC-ee-EEEEEcCCCeEEEEeCC--
Confidence            445443 48999999875         4666654432         333332   21 11 2222  26889988763  


Q ss_pred             CCCCCCeeEEEcCCCC--cE-EEcC---CCCCCCcceeEE-EE--CCEEEEEcccccCCccCCcEEEEeCCCCCeee---
Q 040145          217 DLFELDSAEVLDPVKG--NW-RTIA---SMGTNMASYDAA-VL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES---  284 (402)
Q Consensus       217 ~~~~~~~~~~yd~~t~--~W-~~~~---~~~~~~~~~~~~-~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~---  284 (402)
                            .+++|+..+-  .+ +.+.   .+|.......++ ..  ++++|+|-|.        ..++||..+++-..   
T Consensus       328 ------~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG~--------~yw~yd~~~~~~~~gYP  393 (450)
T 1su3_A          328 ------KYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN--------KYWRYDEYKRSMDPGYP  393 (450)
T ss_dssp             ------EEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCS
T ss_pred             ------EEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeCC--------EEEEEeCCCccccCCCC
Confidence                  4566654320  00 1111   123211222333 33  6899999873        68999976543221   


Q ss_pred             --ccc---cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCcee
Q 040145          285 --MAV---GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWE  326 (402)
Q Consensus       285 --~~~---~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~  326 (402)
                        +..   ..+. ...++...+|++|.|-|.   ..|+||..++.=.
T Consensus       394 k~I~~~fpgip~-~iDAA~~~~g~~YFFkg~---~ywr~d~~~~~v~  436 (450)
T 1su3_A          394 KMIAHDFPGIGH-KVDAVFMKDGFFYFFHGT---RQYKFDPKTKRIL  436 (450)
T ss_dssp             EEHHHHSTTSCS-CCSEEEEETTEEEEEETT---EEEEEETTTTEEE
T ss_pred             cchhhcCCCCCC-CccEEEEcCCeEEEEeCC---EEEEEECCcceEe
Confidence              111   1111 122334568999999765   7999999876533

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=83.43  E-value=43  Score=34.27  Aligned_cols=152  Identities=13%  Similarity=0.033  Sum_probs=75.9

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEc
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLD  228 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd  228 (402)
                      .++++..++.+++.|+.+       ..+.+||..+..-...  +.....-..++...+++++.++.      -..+.++|
T Consensus        21 ~~lafspdg~~lAsgs~D-------g~I~lw~~~~~~~~~~--~~~~~~V~~l~fspg~~L~S~s~------D~~v~lWd   85 (902)
T 2oaj_A           21 IAAAFDFTQNLLAIATVT-------GEVHIYGQQQVEVVIK--LEDRSAIKEMRFVKGIYLVVINA------KDTVYVLS   85 (902)
T ss_dssp             EEEEEETTTTEEEEEETT-------SEEEEECSTTCEEEEE--CSSCCCEEEEEEETTTEEEEEET------TCEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCC-------CEEEEEeCCCcEEEEE--cCCCCCEEEEEEcCCCEEEEEEC------cCeEEEEE
Confidence            344444466777777652       2688888766543221  11111222334344555555554      45788999


Q ss_pred             CCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc-------cccCCCcee--E
Q 040145          229 PVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV-------GLREGWTGS--S  297 (402)
Q Consensus       229 ~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~-------~~~~~~~~~--~  297 (402)
                      ..+.+-...-..+   ....++.+  ++..++.|+.+      ..+..||+.+..-.....       .......+.  +
T Consensus        86 ~~~~~~~~~~~~~---~~V~~v~~sp~g~~l~sgs~d------g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s  156 (902)
T 2oaj_A           86 LYSQKVLTTVFVP---GKITSIDTDASLDWMLIGLQN------GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS  156 (902)
T ss_dssp             TTTCSEEEEEECS---SCEEEEECCTTCSEEEEEETT------SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred             CCCCcEEEEEcCC---CCEEEEEECCCCCEEEEEcCC------CcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence            9876532111111   11222222  56666666543      368899988765321110       001111111  2


Q ss_pred             EEE---CCEEEEEeccCCcEEEEEeCCCCcee
Q 040145          298 VVV---YEHLFVVSELERMKLKVYDPSTDSWE  326 (402)
Q Consensus       298 ~~~---~~~l~~~gg~~~~~~~~yd~~~~~W~  326 (402)
                      +.+   ++.++++|+. ...+ .||..++.-.
T Consensus       157 l~~sp~~~~~l~~g~~-dg~v-lWd~~~~~~~  186 (902)
T 2oaj_A          157 IQWNPRDIGTVLISYE-YVTL-TYSLVENEIK  186 (902)
T ss_dssp             EEEETTEEEEEEEECS-SCEE-EEETTTTEEE
T ss_pred             EEEccCCCCEEEEEeC-CCcE-EEECCCCceE
Confidence            233   2356666654 4567 9999887543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=83.40  E-value=26  Score=31.78  Aligned_cols=80  Identities=11%  Similarity=-0.031  Sum_probs=43.7

Q ss_pred             CCCCCeEEEEEEeC-----CCCceeEEEeecCCCcEEeCCCCCC-CC-CCCCCCceEEEEccCCEEEEEeCccCCCCCCC
Q 040145          101 GFKDPWLFVFAFHK-----CTGKIQWQVLDLTHYCWHTIPAMPC-KD-KVCPHGFRCVSIPREGTLFVCGGMVSDVDCPL  173 (402)
Q Consensus       101 ~~~~~~l~~~gg~~-----~~~~~~~~~~d~~~~~W~~l~~~~~-~~-~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~  173 (402)
                      ...+..+|+.....     ......+.++|+.+.+-..--+++. ++ ..-..-++.+....+..+|+....      ..
T Consensus        86 spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~------~~  159 (386)
T 3sjl_D           86 ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS------PA  159 (386)
T ss_dssp             CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS------SS
T ss_pred             CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC------CC
Confidence            34567788875311     0123458899999887432111221 00 000122444554446678887432      24


Q ss_pred             ceEEEEECCCCce
Q 040145          174 DLVLKYEMQKNRW  186 (402)
Q Consensus       174 ~~~~~~d~~t~~W  186 (402)
                      +.+.++|..+++-
T Consensus       160 ~~VsVID~~t~~v  172 (386)
T 3sjl_D          160 PAVGVVDLEGKAF  172 (386)
T ss_dssp             CEEEEEETTTTEE
T ss_pred             CeEEEEECCCCcE
Confidence            5899999999864

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=83.18  E-value=18  Score=29.63  Aligned_cols=104  Identities=13%  Similarity=0.087  Sum_probs=57.1

Q ss_pred             EEEECCEEEEEcccccCCccCCcEEEEeCCCCCeee--ccc---cccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCC
Q 040145          249 AAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES--MAV---GLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPS  321 (402)
Q Consensus       249 ~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~--~~~---~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~  321 (402)
                      .+..+|++|+|-|.        .+++++.....+..  +..   .+|. ...++...  ++++|+|-|.   .+|+|+..
T Consensus        29 i~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iDAa~~~~~~~~iyfFkG~---~~w~~~~~   96 (207)
T 1pex_A           29 ITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPN-RIDAAYEHPSHDLIFIFRGR---KFWALNGY   96 (207)
T ss_dssp             EEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCS-SCCEEEEETTTTEEEEEETT---EEEEESTT
T ss_pred             EEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCCC-CccEEEEeccCCcEEEEccC---EEEEEeCC
Confidence            44579999999773        56777765443322  111   1222 22233233  6999999775   78999754


Q ss_pred             CCce---eecCCCCCCccc-cCCeEEEEe-CCEEEEEecCceeeeEEEEecccc
Q 040145          322 TDSW---ETIEGPPLPEQI-CKPFAVNAC-DCRVYVVGRNLHVAVGHITRLSTS  370 (402)
Q Consensus       322 ~~~W---~~~~~~~~p~~~-~~~~~~~~~-~~~i~v~GG~~~~~~~~v~~~~~~  370 (402)
                      +..-   +.|..+.+|... ...+++... ++++|++-|.      ..|.||..
T Consensus        97 ~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~------~ywr~d~~  144 (207)
T 1pex_A           97 DILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN------QVWRYDDT  144 (207)
T ss_dssp             CCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT------EEEEEETT
T ss_pred             eeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC------EEEEEeCc
Confidence            3211   123323344321 222233222 5899999883      46778754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=82.75  E-value=24  Score=30.90  Aligned_cols=151  Identities=8%  Similarity=-0.053  Sum_probs=83.4

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeec--CCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCee
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVM--NKMITARSFFASGV--IGGMIYVAGGSSADLFELDSA  224 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~--~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~  224 (402)
                      +.++-..++.||+.-..       ...++++++....-+.+  ..+..|   .+.++  .++.||+.--.    . ...+
T Consensus        83 glavd~~~g~ly~~d~~-------~~~I~~~~~dG~~~~~l~~~~~~~P---~giavdp~~g~ly~td~~----~-~~~I  147 (318)
T 3sov_A           83 GLACDWLGEKLYWTDSE-------TNRIEVSNLDGSLRKVLFWQELDQP---RAIALDPSSGFMYWTDWG----E-VPKI  147 (318)
T ss_dssp             EEEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEECSSCSSE---EEEEEEGGGTEEEEEECS----S-SCEE
T ss_pred             EEEEEcCCCeEEEEECC-------CCEEEEEECCCCcEEEEEeCCCCCc---cEEEEeCCCCEEEEEecC----C-CCEE
Confidence            44443347899987543       34789999875433332  222222   23333  25789987521    1 4578


Q ss_pred             EEEcCCCCcEEEcCCCCCCCcce-eEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEEC
Q 040145          225 EVLDPVKGNWRTIASMGTNMASY-DAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVY  301 (402)
Q Consensus       225 ~~yd~~t~~W~~~~~~~~~~~~~-~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~  301 (402)
                      +++++....-+.+..  ...... +.++-  ++.||+.-..      ...++++|+....-+.+.. .....-...++.+
T Consensus       148 ~r~~~dG~~~~~~~~--~~l~~Pnglavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~-~~~~~P~glav~~  218 (318)
T 3sov_A          148 ERAGMDGSSRFIIIN--SEIYWPNGLTLDYEEQKLYWADAK------LNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFE  218 (318)
T ss_dssp             EEEETTSCSCEEEEC--SSCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEC-SCCSCEEEEEEET
T ss_pred             EEEEcCCCCeEEEEE--CCCCCccEEEEeccCCEEEEEECC------CCEEEEEcCCCCceEEEec-CCCCCceEEEEeC
Confidence            888886433222211  111122 23332  6889998542      3579999987543333322 1111112234578


Q ss_pred             CEEEEEeccCCcEEEEEeCCCCc
Q 040145          302 EHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       302 ~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      +.+|+..- ....|.++|+.+.+
T Consensus       219 ~~lywtd~-~~~~V~~~~~~~G~  240 (318)
T 3sov_A          219 DILYWTDW-STHSILACNKYTGE  240 (318)
T ss_dssp             TEEEEEET-TTTEEEEEETTTCC
T ss_pred             CEEEEEec-CCCeEEEEECCCCC
Confidence            89998843 46789999996554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=82.14  E-value=25  Score=30.75  Aligned_cols=181  Identities=12%  Similarity=0.112  Sum_probs=100.1

Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEECCCCc---eeecCCCcccccceEEEE--ECCEEEEEcCCCCCCCCCCeeEEEcC
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNR---WTVMNKMITARSFFASGV--IGGMIYVAGGSSADLFELDSAEVLDP  229 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~---W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~  229 (402)
                      .++.||..--.       ...++++++....   +.....+.   ...++++  .++.||+.-..      ...++++++
T Consensus        45 ~~~~lyw~D~~-------~~~I~r~~~~g~~~~~~~~~~~l~---~p~glavd~~~g~ly~~d~~------~~~I~~~~~  108 (318)
T 3sov_A           45 SHGLIYWSDVS-------EEAIKRTEFNKTESVQNVVVSGLL---SPDGLACDWLGEKLYWTDSE------TNRIEVSNL  108 (318)
T ss_dssp             GGTEEEEEETT-------TTEEEEEETTSSSCCCEEEEECCS---CCCEEEEETTTTEEEEEETT------TTEEEEEET
T ss_pred             CCCEEEEEECC-------CCcEEEEEccCCCceEEEEcCCCC---CccEEEEEcCCCeEEEEECC------CCEEEEEEC
Confidence            36789988532       3478999987653   11111111   2224444  47899998543      467889988


Q ss_pred             CCCcEEEc--CCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCc-eeEEE-ECCE
Q 040145          230 VKGNWRTI--ASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWT-GSSVV-VYEH  303 (402)
Q Consensus       230 ~t~~W~~~--~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~~-~~~~  303 (402)
                      ....-+.+  ..+..|   .+.++-  +|.||+.--.     ....++++++....-..+.. ....+. +.++- .+++
T Consensus       109 dG~~~~~l~~~~~~~P---~giavdp~~g~ly~td~~-----~~~~I~r~~~dG~~~~~~~~-~~l~~Pnglavd~~~~~  179 (318)
T 3sov_A          109 DGSLRKVLFWQELDQP---RAIALDPSSGFMYWTDWG-----EVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQK  179 (318)
T ss_dssp             TSCSCEEEECSSCSSE---EEEEEEGGGTEEEEEECS-----SSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTE
T ss_pred             CCCcEEEEEeCCCCCc---cEEEEeCCCCEEEEEecC-----CCCEEEEEEcCCCCeEEEEE-CCCCCccEEEEeccCCE
Confidence            75443333  222222   122332  5889987521     12478999986433222211 111111 22222 2788


Q ss_pred             EEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145          304 LFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       304 l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                      ||+.-.. ...|+++|++...-..+..    .......++++.++.||+.--..+    .|+.+++
T Consensus       180 lY~aD~~-~~~I~~~d~dG~~~~~~~~----~~~~~P~glav~~~~lywtd~~~~----~V~~~~~  236 (318)
T 3sov_A          180 LYWADAK-LNFIHKSNLDGTNRQAVVK----GSLPHPFALTLFEDILYWTDWSTH----SILACNK  236 (318)
T ss_dssp             EEEEETT-TTEEEEEETTSCSCEEEEC----SCCSCEEEEEEETTEEEEEETTTT----EEEEEET
T ss_pred             EEEEECC-CCEEEEEcCCCCceEEEec----CCCCCceEEEEeCCEEEEEecCCC----eEEEEEC
Confidence            9988543 6789999997544333321    112345688888999999853322    3666665

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=81.74  E-value=19  Score=35.33  Aligned_cols=104  Identities=9%  Similarity=-0.099  Sum_probs=51.2

Q ss_pred             eEEEEECCCCceeecCCCccc--ccceEEEEE-CCEEEEEcCCCCCC---CCCCeeEEEcCCCCcEEEcCCCCCCCc--c
Q 040145          175 LVLKYEMQKNRWTVMNKMITA--RSFFASGVI-GGMIYVAGGSSADL---FELDSAEVLDPVKGNWRTIASMGTNMA--S  246 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~~~--r~~~~~~~~-~~~iyv~GG~~~~~---~~~~~~~~yd~~t~~W~~~~~~~~~~~--~  246 (402)
                      .++++|..+++-+.+-.....  ......+.. +++.++++..+...   .....++++|..+++-+.+........  .
T Consensus        38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~  117 (723)
T 1xfd_A           38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ  117 (723)
T ss_dssp             CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS
T ss_pred             CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccccc
Confidence            788999988865443221111  011233332 55544444332211   113678999999887665543322111  1


Q ss_pred             eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeec
Q 040145          247 YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM  285 (402)
Q Consensus       247 ~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~  285 (402)
                      .....-+|+.++++..       ..++++|..+++-..+
T Consensus       118 ~~~~SPdG~~la~~~~-------~~i~~~~~~~g~~~~~  149 (723)
T 1xfd_A          118 YAGWGPKGQQLIFIFE-------NNIYYCAHVGKQAIRV  149 (723)
T ss_dssp             BCCBCSSTTCEEEEET-------TEEEEESSSSSCCEEE
T ss_pred             ccEECCCCCEEEEEEC-------CeEEEEECCCCceEEE
Confidence            1112225544444332       2577788777655544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=81.64  E-value=30  Score=31.18  Aligned_cols=247  Identities=13%  Similarity=0.098  Sum_probs=122.0

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCC-CCCCCCC------CCceEEEEcc---CCEEEEEeCccCCCCCCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMP-CKDKVCP------HGFRCVSIPR---EGTLFVCGGMVSDVDCPL  173 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~-~~~~~~~------~~~~~~~~~~---~~~i~v~GG~~~~~~~~~  173 (402)
                      .+.+|+.+.... ....+++.+-...+|+.+.... .+.....      ......++..   .+.||+.+.        .
T Consensus        67 ~~~l~~g~~~g~-~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~--------~  137 (394)
T 3b7f_A           67 PERMLMAARTGH-LGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS--------P  137 (394)
T ss_dssp             TTCEEEEEEC---CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE--------T
T ss_pred             CCeEEEEecCCC-CCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec--------C
Confidence            466777653211 1123666766778899876321 1110000      0111222311   467776542        1


Q ss_pred             ceEEEEECCCCceeecCCC---cc--------------cccceEEEEE---CCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          174 DLVLKYEMQKNRWTVMNKM---IT--------------ARSFFASGVI---GGMIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       174 ~~~~~~d~~t~~W~~~~~~---~~--------------~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      ..+++.+-...+|+.+..+   |.              ....+.+.+.   .+.||+...       ...+++.+-...+
T Consensus       138 ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-------~ggl~~s~DgG~t  210 (394)
T 3b7f_A          138 QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-------SGGVFESTDAGTD  210 (394)
T ss_dssp             TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-------TBEEEEESSTTSS
T ss_pred             CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-------CCCEEEECCCCCC
Confidence            2588887777899987432   11              1112233332   256777643       2346777777788


Q ss_pred             EEEcCCC------CCC-----CcceeEEEE-C--CEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCC--CceeE
Q 040145          234 WRTIASM------GTN-----MASYDAAVL-D--GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREG--WTGSS  297 (402)
Q Consensus       234 W~~~~~~------~~~-----~~~~~~~~~-~--g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~--~~~~~  297 (402)
                      |+.+...      |..     ...+..+.. +  +.||+...        ..+++++....+|+.+...++..  .....
T Consensus       211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--------~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~  282 (394)
T 3b7f_A          211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--------CGIYRMDRREGVWKRIGDAMPREVGDIGFP  282 (394)
T ss_dssp             CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--------TEEEEEETTTTEEECGGGGSCTTTCSCEEE
T ss_pred             ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--------CeEEEeCCCCCcceECCCCCCCCCccceEE
Confidence            9987531      111     112223332 2  66777432        25788888888999987534431  22223


Q ss_pred             EEE----CCEEEEEecc-----------CCcEEEEEeCCCCceeecCCCCCCcccc----CCeEEEE--eC-CEEEEEec
Q 040145          298 VVV----YEHLFVVSEL-----------ERMKLKVYDPSTDSWETIEGPPLPEQIC----KPFAVNA--CD-CRVYVVGR  355 (402)
Q Consensus       298 ~~~----~~~l~~~gg~-----------~~~~~~~yd~~~~~W~~~~~~~~p~~~~----~~~~~~~--~~-~~i~v~GG  355 (402)
                      +..    .+.||+....           ....+++-.-...+|+.+.. .+|....    ...++++  .+ +.||+. +
T Consensus       283 i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~-glp~~~~~~~~~~~~~~~~p~~~~~l~~g-~  360 (394)
T 3b7f_A          283 IVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR-GLPTDQAWLTVKRQAMTADAHAPVGVYFG-T  360 (394)
T ss_dssp             EEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB-TSCCSSCCCCCCTBSEEECCSSSCCEEEE-C
T ss_pred             EEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC-CCCCccccceEEEEEEEECCCCCCEEEEE-e
Confidence            333    4678876311           11234443333468998863 3443211    1122333  23 457754 3


Q ss_pred             CceeeeEEEEecccccccCceeeeEEEEeCC
Q 040145          356 NLHVAVGHITRLSTSEKKWSFSVQWQVVDAP  386 (402)
Q Consensus       356 ~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~~  386 (402)
                      ..    ..++.-.....      +|+++...
T Consensus       361 ~~----g~l~~S~D~G~------tW~~~~~~  381 (394)
T 3b7f_A          361 TG----GEIWASADEGE------HWQCIASH  381 (394)
T ss_dssp             TT----SCEEEESSTTS------BCEEEECS
T ss_pred             CC----CeEEEECCCCC------CceEcccC
Confidence            21    22555543333      88888753

>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}

Probab=81.08  E-value=22  Score=29.42  Aligned_cols=106  Identities=11%  Similarity=0.089  Sum_probs=60.3

Q ss_pred             ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc--eeec----------CCCccc--ccceEEEE---ECCEEEE
Q 040145          148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVM----------NKMITA--RSFFASGV---IGGMIYV  210 (402)
Q Consensus       148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~----------~~~~~~--r~~~~~~~---~~~~iyv  210 (402)
                      ..++.....+++|++-|.         .+|+||..+++  -...          +.+|..  ...--++.   .++++|+
T Consensus        62 iDAa~~~~~g~~~fFkg~---------~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yf  132 (225)
T 3oyo_A           62 IDCSFHTEASEAYVFSGN---------HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYL  132 (225)
T ss_dssp             CSEEEECSTTEEEEEETT---------EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEE
T ss_pred             EeEEEEcCCCeEEEEcCC---------EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEE
Confidence            344443258999999875         78899764431  1111          122220  00222332   2689999


Q ss_pred             EcCCCCCCCCCCeeEEEcCCCCcEEE----cC-CCCCC-----CcceeEEEE---CCEEEEEcccccCCccCCcEEEEeC
Q 040145          211 AGGSSADLFELDSAEVLDPVKGNWRT----IA-SMGTN-----MASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDP  277 (402)
Q Consensus       211 ~GG~~~~~~~~~~~~~yd~~t~~W~~----~~-~~~~~-----~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~  277 (402)
                      +-|        +..+.||..+++...    +. ..|..     .....++..   ++++|++-|.        ..++||.
T Consensus       133 FkG--------~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~--------~ywr~d~  196 (225)
T 3oyo_A          133 FKG--------NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ--------NYVRIDF  196 (225)
T ss_dssp             EET--------TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT--------EEEEEEC
T ss_pred             EeC--------CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC--------EEEEEeC
Confidence            987        357899977665443    11 12221     122334433   7899999874        6899998


Q ss_pred             C
Q 040145          278 S  278 (402)
Q Consensus       278 ~  278 (402)
                      .
T Consensus       197 ~  197 (225)
T 3oyo_A          197 T  197 (225)
T ss_dssp             C
T ss_pred             C
Confidence            7

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	402
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	2e-10
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	4e-06
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	8e-05
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	7e-04
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	0.002
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	7e-09
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	7e-09
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	3e-08
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	5e-06
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	3e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	5e-06
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	2e-05
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.002

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 2e-10
 Identities = 31/146 (21%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 106 WLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGM 165
            +     +   G      L+     +           +               ++  GG 
Sbjct: 145 AVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGY 204

Query: 166 VSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAE 225
             D    L+ V +Y+++   WT +  M   RS     V  G IYV GG     F LDS E
Sbjct: 205 --DGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTF-LDSVE 261

Query: 226 VLDPVKGNWRTIASMGTNMASYDAAV 251
             DP    W  +  M +  +    AV
Sbjct: 262 CYDPDTDTWSEVTRMTSGRSGVGVAV 287

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 159 LFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGS 214
           ++  GG        L  +  Y      W  +  +   RS  A  V+GG++Y  GG 
Sbjct: 7   IYTAGGYFRQ---SLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGR 59

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 2/99 (2%)

Query: 105 PWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGG 164
             +     +   G      L+                 +            +G ++V GG
Sbjct: 191 VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGG 250

Query: 165 MVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV 203
              D    LD V  Y+   + W+ + +M + RS     V
Sbjct: 251 Y--DGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 7e-04
 Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 8/220 (3%)

Query: 120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKY 179
                D +    +                R           +     S      + V +Y
Sbjct: 63  PDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERY 122

Query: 180 EMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS 239
           E +++ W ++  M+T R      V+  ++Y  GG       L+SAE   P +  WR I +
Sbjct: 123 EPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT-NRLNSAECYYPERNEWRMITA 181

Query: 240 MGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV 299
           M T  +     VL   +    G+     ++   + YD  T+ W  +A            V
Sbjct: 182 MNTIRSGAGVCVLHNCIYAAGGYDGQDQLN-SVERYDVETETWTFVAPMKHRRSALGITV 240

Query: 300 VYEHLFVVSELERMK----LKVYDPSTDSWETIEGPPLPE 335
               ++V+   +       ++ YDP TD+W  +    +  
Sbjct: 241 HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV--TRMTS 278

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 44/259 (16%), Positives = 81/259 (31%), Gaps = 12/259 (4%)

Query: 121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDV--DCPLDLVLK 178
            +  + ++  W  +  +     V   G     +   G L+  GG  +    +     +  
Sbjct: 21  LEAYNPSNGTWLRLADLQ----VPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDC 74

Query: 179 YEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA 238
           Y    N+W+    M   R+    GVI G IY  GGS   +         +P +  W  +A
Sbjct: 75  YNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERY-EPERDEWHLVA 133

Query: 239 SMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSV 298
            M T       AVL+  L    G+     +    + Y P  + W  +             
Sbjct: 134 PMLTRRIGVGVAVLNRLLYAVGGFDGTNRL-NSAECYYPERNEWRMITAMNTIRSGAGVC 192

Query: 299 VVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICK-PFAVNACDCRVYVV-GRN 356
           V++  ++     +           D          P +  +    +     R+YV+ G +
Sbjct: 193 VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYD 252

Query: 357 LHVAVGHITRLSTSEKKWS 375
            H  +  +         WS
Sbjct: 253 GHTFLDSVECYDPDTDTWS 271

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 54.8 bits (130), Expect = 7e-09
 Identities = 27/201 (13%), Positives = 52/201 (25%), Gaps = 30/201 (14%)

Query: 182 QKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFE-----LDSAEVLDPVKGNWRT 236
              RW     +    +  A     G + +      D F      +      DP  G    
Sbjct: 7   GLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD 66

Query: 237 IASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGW 293
                T    +   +    +G+++VT G            +YD S+D+W           
Sbjct: 67  RTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT-----SLYDSSSDSWIPGPDMQVARG 121

Query: 294 TGSSVVVYEHLFVVSELERMKLKV------YDPSTDSWETIEGPPLPEQI---------- 337
             SS  + +                     Y PS+ +W ++    +   +          
Sbjct: 122 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 181

Query: 338 -CKPFAVNACDCRVYVVGRNL 357
               +        V+  G + 
Sbjct: 182 DNHAWLFGWKKGSVFQAGPST 202

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 54.8 bits (130), Expect = 7e-09
 Identities = 16/137 (11%), Positives = 39/137 (28%), Gaps = 8/137 (5%)

Query: 101 GFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLF 160
           G    +     +          ++ L                     F    +  +G+ F
Sbjct: 244 GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTF 303

Query: 161 VCGG----MVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI--GGMIYVAGG- 213
           + GG    +  +   P+     Y  +++ +   N     R + +  ++   G ++  GG 
Sbjct: 304 ITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363

Query: 214 -SSADLFELDSAEVLDP 229
                      A++  P
Sbjct: 364 LCGDCTTNHFDAQIFTP 380

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 32/224 (14%), Positives = 60/224 (26%), Gaps = 27/224 (12%)

Query: 81  KRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKCTGKI--------QWQVLDLTHYCWH 132
           K W  L   K        + G        + F    G +                     
Sbjct: 157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK 216

Query: 133 TIPAMPCKDKVCP---HGFRCVSIPREGTLFVCGGMVSDVD------CPLDLVLKYEMQK 183
           +         V P    G   +    +G +   GG     D        +  + +     
Sbjct: 217 SAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP 276

Query: 184 NRWTVMNKMITARSF-FASGVIGGMIYVAGGSSA-----DLFELDSAEVLDPVKGNWRTI 237
           N     N +  AR+F  +  +  G  ++ GG        D   + + E+  P +  +   
Sbjct: 277 NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 336

Query: 238 ASMGTNMASYDAAVL--DGKLLVTEGWLW--PFFVSPRGQVYDP 277
                    +  ++L  DG++    G L           Q++ P
Sbjct: 337 NPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTP 380

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 26/157 (16%), Positives = 46/157 (29%), Gaps = 8/157 (5%)

Query: 226 VLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRG-----QVYDPSTD 280
              P  G W     +    A+       G++L+   +    F    G       +DPST 
Sbjct: 3   APQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG 62

Query: 281 NWESMAVGL--REGWTGSSVVVYE-HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQI 337
                 V +   + +     +     + V    +  K  +YD S+DSW       +    
Sbjct: 63  IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY 122

Query: 338 CKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKW 374
                ++           +  V   +    S S K W
Sbjct: 123 QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 159

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 34/254 (13%), Positives = 62/254 (24%), Gaps = 23/254 (9%)

Query: 106 WLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVC-GG 164
           +    ++     +   +V   +   W ++P       +               LF    G
Sbjct: 134 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG 193

Query: 165 MVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSA 224
            V        +   Y           K  + R      + G  +         L    S 
Sbjct: 194 SVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP 253

Query: 225 EVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES 284
           +  D        I ++G    S +       L           V P G  +         
Sbjct: 254 DYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFAR-TFHTSVVLPDGSTF--------- 303

Query: 285 MAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN 344
           +  G R G              V   E     +Y P  D++       +  ++    ++ 
Sbjct: 304 ITGGQRRGIPFEDS------TPVFTPE-----IYVPEQDTFYKQNPNSIV-RVYHSISLL 351

Query: 345 ACDCRVYVVGRNLH 358
             D RV+  G  L 
Sbjct: 352 LPDGRVFNGGGGLC 365

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.7 bits (100), Expect = 5e-06
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 52  FIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFA 111
            I  LP +++L     L  E       V + W+ ++      +   K+L   + ++    
Sbjct: 5   LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLW---KKLLISENFVSPKG 61

Query: 112 FHKCTGKIQWQVLDL-THYCWHTI 134
           F+    K+  +   L         
Sbjct: 62  FNSLNLKLSQKYPKLSQQDRLRLS 85

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 56 LPDDVALNCLLRLPVESHAACRAVCKRWHLL 86
          LPD++ L     L +        VCKRW+ L
Sbjct: 4  LPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 52  FIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTRRKELGFKDPWLFVFA 111
           FI  LP ++AL  L  L  +        C+ W +L  +   +  + KE G  +P      
Sbjct: 18  FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRR 77

Query: 112 --FHKCTGKIQWQVLDLTHY 129
                      W+   +  +
Sbjct: 78  KVIKPGFIHSPWKSAYIRQH 97

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 52 FIPGLP----DDVALNCLLRLPVESHAACRAVCKRWHLL 86
          FI  LP    D +A N L  L  +S  A   VCK W+ +
Sbjct: 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	402
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.98
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.96
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.93
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.75
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.95
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.72
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.65
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.43
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.36
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.31
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.29
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.22
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.02
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.01
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.98
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.85
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.79
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.58
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.52
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.52
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.38
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	96.13
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.05
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.98
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	95.88
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	95.78
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	95.77
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.62
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	95.54
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	95.46
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.28
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	95.19
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.12
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	94.89
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	94.82
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	94.73
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	94.68
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.67
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	94.66
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	94.57
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	94.55
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	94.52
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	94.47
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	93.94
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	93.89
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	93.39
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	93.33
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	92.74
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	92.55
d1tbga_	340	beta1-subunit of the signal-transducing G protein	92.23
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.89
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.71
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	91.5
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	90.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	90.84
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.17
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.15
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	90.06
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.81
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	89.48
d1tbga_	340	beta1-subunit of the signal-transducing G protein	88.17
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	87.6
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	86.15
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	86.11
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	84.97
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	82.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	81.71
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	80.14

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-38  Score=281.32  Aligned_cols=272  Identities=18%  Similarity=0.296  Sum_probs=227.9

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCC--CCCCCceEEEEE
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSD--VDCPLDLVLKYE  180 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~--~~~~~~~~~~~d  180 (402)
                      .+..||++||........+.+||+.+++|+.++++|.++    ..++++++  +++||++||....  +....+++++||
T Consensus         3 ~g~~iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~R----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd   76 (288)
T d1zgka1           3 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR----SGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYN   76 (288)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred             cCCEEEEECCcCCCCCceEEEEECCCCeEEECCCCCCcc----ceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcc
Confidence            367899999987777778999999999999999998655    66777776  9999999997522  234577999999


Q ss_pred             CCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEc
Q 040145          181 MQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTE  260 (402)
Q Consensus       181 ~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~g  260 (402)
                      +.+++|+.++++|.+|..|+++.++++||++||...... .+.++.||+.++.|...+.++..|..++++..++++|++|
T Consensus        77 ~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~G  155 (288)
T d1zgka1          77 PMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIH-HNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVG  155 (288)
T ss_dssp             TTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEE-CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred             cccccccccccccceecceeccccceeeEEecceecccc-cceeeeeccccCccccccccccccccceeeeeeecceEec
Confidence            999999999999999999999999999999999866555 7889999999999999999999999999999999999999


Q ss_pred             ccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC----CcEEEEEeCCCCceeecCCCCCCcc
Q 040145          261 GWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE----RMKLKVYDPSTDSWETIEGPPLPEQ  336 (402)
Q Consensus       261 G~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~~p~~  336 (402)
                      |.... .....++.||+.+++|...+..........++..+++|+++||..    .+..+.||..+++|..++.++.+  
T Consensus       156 G~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--  232 (288)
T d1zgka1         156 GFDGT-NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR--  232 (288)
T ss_dssp             CBCSS-CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC--
T ss_pred             Ccccc-cccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCc--
Confidence            98644 335689999999999999886444444444578999999999876    46889999999999999844444  


Q ss_pred             ccCCeEEEEeCCEEEEEecCc-eeeeEEEEecccccccCceeeeEEEEeC-CCCCCC
Q 040145          337 ICKPFAVNACDCRVYVVGRNL-HVAVGHITRLSTSEKKWSFSVQWQVVDA-PDNFSD  391 (402)
Q Consensus       337 ~~~~~~~~~~~~~i~v~GG~~-~~~~~~v~~~~~~~~~~~~~~~W~~~~~-~~~~~~  391 (402)
                       |..++++..+|+|||+||.+ +....++++||++.+      +|+.+.. |....+
T Consensus       233 -r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~------~W~~~~~~p~~R~~  282 (288)
T d1zgka1         233 -RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD------TWSEVTRMTSGRSG  282 (288)
T ss_dssp             -CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT------EEEEEEECSSCCBS
T ss_pred             -ccceEEEEECCEEEEEecCCCCeecceEEEEECCCC------EEEECCCCCCCcEe
Confidence             77889999999999999965 445688999999888      7888754 444433

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.7e-31  Score=236.20  Aligned_cols=257  Identities=20%  Similarity=0.318  Sum_probs=210.7

Q ss_pred             chhhhhhhccHhHHHhhcCchHhHHHHhhc--CCCCCeEEEEEEeC-----CCCceeEEEeecCCCcEEeCCCCCCCCCC
Q 040145           71 ESHAACRAVCKRWHLLLGNKERFFTRRKEL--GFKDPWLFVFAFHK-----CTGKIQWQVLDLTHYCWHTIPAMPCKDKV  143 (402)
Q Consensus        71 ~~l~~~~~v~k~W~~l~~s~~~~~~~r~~~--~~~~~~l~~~gg~~-----~~~~~~~~~~d~~~~~W~~l~~~~~~~~~  143 (402)
                      .++..+....++|..+...|    ..|..+  ...++.+|++||..     .....++++||+.+++|+.+++++.++  
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p----~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r--   92 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQ----VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPR--   92 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCS----SCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCC--
T ss_pred             ceEEEEECCCCeEEECCCCC----CccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccccccccccccccee--
Confidence            34556777888999986555    344443  34589999998742     123456899999999999999998555  


Q ss_pred             CCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCe
Q 040145          144 CPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDS  223 (402)
Q Consensus       144 ~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  223 (402)
                        ..++++++  +++||++||....  ...+..++||+.++.|...+.++.+|..++++..++++|++||...... ...
T Consensus        93 --~~~~~~~~--~~~i~~~gg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~-~~~  165 (288)
T d1zgka1          93 --NRIGVGVI--DGHIYAVGGSHGC--IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR-LNS  165 (288)
T ss_dssp             --BTCEEEEE--TTEEEEECCEETT--EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCB-CCC
T ss_pred             --cceecccc--ceeeEEecceecc--cccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccc-cce
Confidence              66777777  9999999998543  4678899999999999999999999999999999999999999866554 778


Q ss_pred             eEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEECC
Q 040145          224 AEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVVYE  302 (402)
Q Consensus       224 ~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~  302 (402)
                      ++.||+.+++|...+.++..+..++++..+++||++||.... ...+..+.||+.+++|..+++ ++.++.+++ +.+++
T Consensus       166 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~-~~~~~~~~~~~~~~~~~~~~~-~p~~r~~~~~~~~~~  243 (288)
T d1zgka1         166 AECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVETETWTFVAP-MKHRRSALGITVHQG  243 (288)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS-SBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETT
T ss_pred             EEEeeccccccccccccccccccccccceeeeEEEecCcccc-ccccceeeeeecceeeecccC-ccCcccceEEEEECC
Confidence            999999999999999999999999999999999999998655 345689999999999999986 555555555 78899


Q ss_pred             EEEEEeccC----CcEEEEEeCCCCceeecCCCCCCccccCCeEEEE
Q 040145          303 HLFVVSELE----RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA  345 (402)
Q Consensus       303 ~l~~~gg~~----~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~  345 (402)
                      +||++||.+    .+++++||+.+++|+++..+|.+   |.+|++++
T Consensus       244 ~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---R~~~~~~~  287 (288)
T d1zgka1         244 RIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSG---RSGVGVAV  287 (288)
T ss_dssp             EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC---CBSCEEEE
T ss_pred             EEEEEecCCCCeecceEEEEECCCCEEEECCCCCCC---cEeEEEEE
Confidence            999999975    46799999999999999844444   66777664

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.96  E-value=6.8e-29  Score=230.84  Aligned_cols=296  Identities=13%  Similarity=0.129  Sum_probs=198.6

Q ss_pred             cHhHHHhhcCchHhHHHHhhcCCCCCeEEEEEEeCC-------CCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEE
Q 040145           80 CKRWHLLLGNKERFFTRRKELGFKDPWLFVFAFHKC-------TGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVS  152 (402)
Q Consensus        80 ~k~W~~l~~s~~~~~~~r~~~~~~~~~l~~~gg~~~-------~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~  152 (402)
                      ..+|...+..| .. .....+...+++||++||...       .......+||+.+++|..++.++.++  .+...+ ++
T Consensus         8 ~g~W~~~~~~p-~~-~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~--~~~~~~-~~   82 (387)
T d1k3ia3           8 LGRWGPTIDLP-IV-PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH--DMFCPG-IS   82 (387)
T ss_dssp             SCEEEEEEECS-SC-CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC--CCSSCE-EE
T ss_pred             CCccCCcCCCC-cc-ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCc--ccceeE-EE
Confidence            34687776666 22 112223445889999998532       22335779999999999887776443  112223 34


Q ss_pred             EccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCC
Q 040145          153 IPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVK  231 (402)
Q Consensus       153 ~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t  231 (402)
                      +..+++||++||.+      .+++++||+.+++|+.++.|+.+|..|+++++ ++++|++||........+++++||+.+
T Consensus        83 ~~~~g~i~v~Gg~~------~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          83 MDGNGQIVVTGGND------AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             ECTTSCEEEECSSS------TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             EecCCcEEEeecCC------CcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            44688999999873      35789999999999999999999999999887 679999999876666588999999999


Q ss_pred             CcEEEcCCCCCCCcc--------------eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeecccc------ccC
Q 040145          232 GNWRTIASMGTNMAS--------------YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVG------LRE  291 (402)
Q Consensus       232 ~~W~~~~~~~~~~~~--------------~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~------~~~  291 (402)
                      ++|+.++.++.....              ......+|++|++||.      ...++.||+.+..|......      .+.
T Consensus       157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (387)
T d1k3ia3         157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS------TAMNWYYTSGSGDVKSAGKRQSNRGVAPD  230 (387)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS------SEEEEEECSTTCEEEEEEECEETTEECCC
T ss_pred             CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc------CCcEEecCcccCcEeeccccccCcccCcc
Confidence            999998766543211              1112226777777764      24688999999999876531      122


Q ss_pred             CCceeEEE---ECCEEEEEeccCC-------cEEE-----EEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEec
Q 040145          292 GWTGSSVV---VYEHLFVVSELER-------MKLK-----VYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGR  355 (402)
Q Consensus       292 ~~~~~~~~---~~~~l~~~gg~~~-------~~~~-----~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG  355 (402)
                      ...+.++.   .++++|++||...       ....     .++...+.|..+..  +|.. |..++++ ..+|+|||+||
T Consensus       231 ~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~-r~~~~~~~~~dg~i~v~GG  307 (387)
T d1k3ia3         231 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG--LYFA-RTFHTSVVLPDGSTFITGG  307 (387)
T ss_dssp             CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC--CSSC-CBSCEEEECTTSCEEEECC
T ss_pred             cccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccc--cccc-cccceeeeccCCeEEEECC
Confidence            23333332   3799999999641       1122     22344567888874  4443 4445544 45889999999


Q ss_pred             Cc-------eeeeEEEEecccccccCceeeeEEEEeC---CCCCCCcccc--ceeEEe
Q 040145          356 NL-------HVAVGHITRLSTSEKKWSFSVQWQVVDA---PDNFSDLTPS--SSQVLF  401 (402)
Q Consensus       356 ~~-------~~~~~~v~~~~~~~~~~~~~~~W~~~~~---~~~~~~~~~~--~~~~~~  401 (402)
                      ..       .....+++.|||+.+      +|+++++   |+..+.+..+  +.+||+
T Consensus       308 ~~~~~~~~~~~~~~~ve~Ydp~~~------~W~~~~~~~~~R~~Hs~a~l~~dG~v~v  359 (387)
T d1k3ia3         308 QRRGIPFEDSTPVFTPEIYVPEQD------TFYKQNPNSIVRVYHSISLLLPDGRVFN  359 (387)
T ss_dssp             BSBCCTTCCCSBCCCCEEEEGGGT------EEEECCCCSSCCCTTEEEEECTTSCEEE
T ss_pred             cccCccCCCCcEeceEEEEECCCC------eEEECCCCCCcccceEEEEECCCCEEEE
Confidence            54       234557899999887      7888754   3333433333  446654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.93  E-value=3.3e-25  Score=205.67  Aligned_cols=278  Identities=14%  Similarity=0.053  Sum_probs=185.7

Q ss_pred             hhhhccHhHHHhhcCchHhHHHHh---hcCCCCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEE
Q 040145           75 ACRAVCKRWHLLLGNKERFFTRRK---ELGFKDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCV  151 (402)
Q Consensus        75 ~~~~v~k~W~~l~~s~~~~~~~r~---~~~~~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~  151 (402)
                      .+......|..+...+  ..+.+.   .....++.+|++|+...   ..+.+||+.+++|..++.++.++    ..++++
T Consensus        56 ~yd~~t~~w~~~~~~~--~~~~~~~~~~~~~~~g~i~v~Gg~~~---~~~~~yd~~~~~w~~~~~~~~~r----~~~~~~  126 (387)
T d1k3ia3          56 SWDPSTGIVSDRTVTV--TKHDMFCPGISMDGNGQIVVTGGNDA---KKTSLYDSSSDSWIPGPDMQVAR----GYQSSA  126 (387)
T ss_dssp             EECTTTCCBCCCEEEE--CSCCCSSCEEEECTTSCEEEECSSST---TCEEEEEGGGTEEEECCCCSSCC----SSCEEE
T ss_pred             EEECCCCcEeecCCCC--CCcccceeEEEEecCCcEEEeecCCC---cceeEecCccCcccccccccccc----ccccee
Confidence            3556667786654322  001111   12235788998886543   34789999999999999998554    555555


Q ss_pred             EEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc--------------ceEEEEECCEEEEEcCCCCC
Q 040145          152 SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS--------------FFASGVIGGMIYVAGGSSAD  217 (402)
Q Consensus       152 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~--------------~~~~~~~~~~iyv~GG~~~~  217 (402)
                      ++ .+++||++||..... ...+++++|||.+++|+.++.+..+..              .......++++|+.||.   
T Consensus       127 ~~-~dG~v~v~GG~~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~---  201 (387)
T d1k3ia3         127 TM-SDGRVFTIGGSWSGG-VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS---  201 (387)
T ss_dssp             EC-TTSCEEEECCCCCSS-SCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS---
T ss_pred             ee-cCCceeeeccccccc-cccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc---
Confidence            55 588999999985443 567899999999999999886543321              11222335777887775   


Q ss_pred             CCCCCeeEEEcCCCCcEEEcCCCCCCC-------cceeEEE--ECCEEEEEcccccCCcc--CCcEEEE-----eCCCCC
Q 040145          218 LFELDSAEVLDPVKGNWRTIASMGTNM-------ASYDAAV--LDGKLLVTEGWLWPFFV--SPRGQVY-----DPSTDN  281 (402)
Q Consensus       218 ~~~~~~~~~yd~~t~~W~~~~~~~~~~-------~~~~~~~--~~g~ly~~gG~~~~~~~--~~~~~~y-----d~~~~~  281 (402)
                         ....+.||+.+..|...+.++..+       ..+....  .++++|++||.......  ......+     +...+.
T Consensus       202 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (387)
T d1k3ia3         202 ---TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT  278 (387)
T ss_dssp             ---SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE
T ss_pred             ---CCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCc
Confidence               667899999999998876554333       2222222  37999999997532211  1122333     234456


Q ss_pred             eeeccccccCCCceeE-EEE-CCEEEEEeccC----------CcEEEEEeCCCCceeecCCCCCCccccCCeEEEE--eC
Q 040145          282 WESMAVGLREGWTGSS-VVV-YEHLFVVSELE----------RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA--CD  347 (402)
Q Consensus       282 W~~~~~~~~~~~~~~~-~~~-~~~l~~~gg~~----------~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~  347 (402)
                      |..+.. ++.++..++ +++ +|+||++||..          ...+++||+++++|++++.++.|   |..|++++  .+
T Consensus       279 ~~~~~~-~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~---R~~Hs~a~l~~d  354 (387)
T d1k3ia3         279 VFASNG-LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV---RVYHSISLLLPD  354 (387)
T ss_dssp             EECTTC-CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC---CCTTEEEEECTT
T ss_pred             eeeccc-cccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCc---ccceEEEEECCC
Confidence            777775 565555544 444 78999999964          23689999999999999965555   55555444  48


Q ss_pred             CEEEEEecCc----eeeeEEEEeccccccc
Q 040145          348 CRVYVVGRNL----HVAVGHITRLSTSEKK  373 (402)
Q Consensus       348 ~~i~v~GG~~----~~~~~~v~~~~~~~~~  373 (402)
                      |+|||+||..    .....++++|+|-+.+
T Consensus       355 G~v~v~GG~~~~~~~~~~~~~e~y~Ppyl~  384 (387)
T d1k3ia3         355 GRVFNGGGGLCGDCTTNHFDAQIFTPNYLY  384 (387)
T ss_dssp             SCEEEEECCCCTTCSCCCCEEEEEECGGGB
T ss_pred             CEEEEEeCCCcCCCCcccceEEEEcchhcc
Confidence            9999999953    2245789999987653

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.6e-09  Score=61.46  Aligned_cols=38  Identities=29%  Similarity=0.500  Sum_probs=36.0

Q ss_pred             CCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCc
Q 040145           53 IPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNK   90 (402)
Q Consensus        53 ~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~   90 (402)
                      |..||+|++.+||++||..++.+++.|||+|+.+..++
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~   38 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE   38 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            46799999999999999999999999999999999887

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.7e-06  Score=60.20  Aligned_cols=46  Identities=24%  Similarity=0.475  Sum_probs=41.7

Q ss_pred             CCCCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhHHH
Q 040145           50 EPFIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFTR   96 (402)
Q Consensus        50 ~~~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~~~   96 (402)
                      ...++.||+||+..||++|+..++.++..|||+|+.+..++ .+...
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~-~lW~~   61 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDN-LLWRE   61 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCS-HHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCH-HHHHH
Confidence            34788999999999999999999999999999999999998 77543

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=5.6e-06  Score=58.88  Aligned_cols=42  Identities=19%  Similarity=0.430  Sum_probs=37.2

Q ss_pred             CCCCCcHHHHHHhhccCccchhhhhhhccHhHHHhhc-CchHhH
Q 040145           52 FIPGLPDDVALNCLLRLPVESHAACRAVCKRWHLLLG-NKERFF   94 (402)
Q Consensus        52 ~~~~Lp~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~-s~~~~~   94 (402)
                      .++.||+||++.||+.|+..++.++..|||+|+.++. ++ .+.
T Consensus         5 ~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~-~LW   47 (100)
T d1nexb1           5 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKST-SLW   47 (100)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCS-HHH
T ss_pred             chhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCH-HHH
Confidence            4567999999999999999999999999999999885 46 554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.65  E-value=0.012  Score=49.35  Aligned_cols=235  Identities=11%  Similarity=0.043  Sum_probs=118.4

Q ss_pred             CCCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145          103 KDPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       103 ~~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      .++.||+....    ..++.+||+.-+--...+.............+.+.....+..++....      ....+.++++.
T Consensus        32 ~dg~i~VaD~~----n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~  101 (279)
T d1q7fa_          32 AQNDIIVADTN----NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS------PTHQIQIYNQY  101 (279)
T ss_dssp             TTCCEEEEEGG----GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG------GGCEEEEECTT
T ss_pred             CCCCEEEEECC----CCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccC------Ccccccccccc
Confidence            36678887532    345778887743222232221111001111233333233444443222      13367888886


Q ss_pred             CCceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEc
Q 040145          183 KNRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAV-LDGKLLVTE  260 (402)
Q Consensus       183 t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~ly~~g  260 (402)
                      ...++...... -......++ .++.+|+....      ...+.+||+..+.-...............++ -++.+|+..
T Consensus       102 g~~~~~~~~~~-~~~p~~~avd~~G~i~v~~~~------~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_         102 GQFVRKFGATI-LQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             SCEEEEECTTT-CSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             ccceeecCCCc-ccccceeccccCCcEEEEeec------cceeeEeccCCceeecccccccccccceeeeccceeEEeee
Confidence            66555543211 122223333 35688888654      4568889987665444432222222222222 267899886


Q ss_pred             ccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEE--ECCEEEEEeccCCcEEEEEeCCCCcee-ecCCCCCCccc
Q 040145          261 GWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWE-TIEGPPLPEQI  337 (402)
Q Consensus       261 G~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~-~~~~~~~p~~~  337 (402)
                      ...      ..+.+||........+... ........+.  -+|.||+....+...+.+|+++.+ +. .+.. +..  .
T Consensus       175 ~~~------~~V~~~d~~G~~~~~~g~~-g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~-~~~~~~~-~~~--~  243 (279)
T d1q7fa_         175 NRA------HCVKVFNYEGQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LISALES-KVK--H  243 (279)
T ss_dssp             GGG------TEEEEEETTCCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEEEEEE-SSC--C
T ss_pred             ccc------cceeeeecCCceeeeeccc-ccccCCcccccccCCeEEEEECCCCcEEEEECCCCC-EEEEEeC-CCC--C
Confidence            642      4789999876655555421 1111112233  368899986654557999998644 32 2221 111  1


Q ss_pred             cCCeEEE-EeCCEEEEEecCceeeeEEEEecc
Q 040145          338 CKPFAVN-ACDCRVYVVGRNLHVAVGHITRLS  368 (402)
Q Consensus       338 ~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~  368 (402)
                      ...++++ ..+|.|||..+ ++.  ..+++|.
T Consensus       244 ~~p~~vav~~dG~l~V~~~-n~~--v~~fr~~  272 (279)
T d1q7fa_         244 AQCFDVALMDDGSVVLASK-DYR--LYIYRYV  272 (279)
T ss_dssp             SCEEEEEEETTTEEEEEET-TTE--EEEEECS
T ss_pred             CCEeEEEEeCCCcEEEEeC-CCe--EEEEEee
Confidence            2234444 45779988764 322  4455553

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.43  E-value=0.025  Score=48.38  Aligned_cols=213  Identities=12%  Similarity=0.023  Sum_probs=111.3

Q ss_pred             EEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeec-CCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcC
Q 040145          152 SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVM-NKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDP  229 (402)
Q Consensus       152 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~-~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~  229 (402)
                      ++..++.||+..-       ....++++||.++..... .+..  -..++++.. ++++|++...+..  ....+..+|.
T Consensus        46 ~~D~~G~Ly~~D~-------~~g~I~ri~p~g~~~~~~~~~~~--~~p~gla~~~dG~l~va~~~~~~--~~~~i~~~~~  114 (319)
T d2dg1a1          46 NFDRQGQLFLLDV-------FEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATE  114 (319)
T ss_dssp             EECTTSCEEEEET-------TTCEEEEECTTTCCEEEEEECSS--SSEEEEEECTTSCEEEEECTTSS--SCCEEEEECT
T ss_pred             EECCCCCEEEEEC-------CCCEEEEEECCCCeEEEEEeCCC--CCeeEEEECCCCCEEEEecCCCc--cceeEEEEcC
Confidence            3334677888743       234799999998764432 1111  122344443 6788987532111  1456788888


Q ss_pred             CCCcEEEcCCCCCCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECC-EEEE
Q 040145          230 VKGNWRTIASMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFV  306 (402)
Q Consensus       230 ~t~~W~~~~~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~  306 (402)
                      .+.................-..  -+|.+|+.............++.+++.....+.+......+ .+.+..-++ .||+
T Consensus       115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~p-nGia~s~dg~~lyv  193 (319)
T d2dg1a1         115 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA-NGIALSTDEKVLWV  193 (319)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE-EEEEECTTSSEEEE
T ss_pred             CCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecccee-eeeeeccccceEEE
Confidence            8877655432222222222222  37889886433222222346888998887777664422211 111222234 5887


Q ss_pred             EeccCCcEEEEEeCCCCc---eeecCCC--CCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEecccccccCceeeeE
Q 040145          307 VSELERMKLKVYDPSTDS---WETIEGP--PLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQW  380 (402)
Q Consensus       307 ~gg~~~~~~~~yd~~~~~---W~~~~~~--~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W  380 (402)
                      .... .+.|++||.+.+.   .......  ..... ...-++++ .+|.|||.--..+    .|.+|+|..+      .-
T Consensus       194 ad~~-~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~-~~PdGl~vD~~G~l~Va~~~~g----~V~~~~p~G~------~l  261 (319)
T d2dg1a1         194 TETT-ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQG----RVLVFNKRGY------PI  261 (319)
T ss_dssp             EEGG-GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTT----EEEEECTTSC------EE
T ss_pred             eccc-CCceEEEEEcCCCceeccccceeeeccCCc-cceeeeeEcCCCCEEEEEcCCC----EEEEECCCCc------EE
Confidence            6443 6689999875431   1110000  01100 11224444 5788999754333    4889988544      33


Q ss_pred             EEEeCCCC
Q 040145          381 QVVDAPDN  388 (402)
Q Consensus       381 ~~~~~~~~  388 (402)
                      .++..|..
T Consensus       262 ~~i~~P~~  269 (319)
T d2dg1a1         262 GQILIPGR  269 (319)
T ss_dssp             EEEECTTG
T ss_pred             EEEeCCCc
Confidence            45555543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.36  E-value=0.01  Score=50.35  Aligned_cols=215  Identities=10%  Similarity=0.064  Sum_probs=112.1

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.||.+..    ....++++|+.+++-.... ++.       .-++.+...++.+++...         +.+++||+.+
T Consensus        29 ~~~l~wvDi----~~~~I~r~d~~~g~~~~~~-~~~-------~~~~i~~~~dg~l~va~~---------~gl~~~d~~t   87 (295)
T d2ghsa1          29 SGTAWWFNI----LERELHELHLASGRKTVHA-LPF-------MGSALAKISDSKQLIASD---------DGLFLRDTAT   87 (295)
T ss_dssp             TTEEEEEEG----GGTEEEEEETTTTEEEEEE-CSS-------CEEEEEEEETTEEEEEET---------TEEEEEETTT
T ss_pred             CCEEEEEEC----CCCEEEEEECCCCeEEEEE-CCC-------CcEEEEEecCCCEEEEEe---------CccEEeeccc
Confidence            566776642    2335889999988654432 331       123344434777877542         2699999999


Q ss_pred             CceeecCCCccc----ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE---CCEE
Q 040145          184 NRWTVMNKMITA----RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL---DGKL  256 (402)
Q Consensus       184 ~~W~~~~~~~~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~---~g~l  256 (402)
                      ++.+.+......    |.....+.-++.||+........  ...-..|....++.+.+..   .........+   +..+
T Consensus        88 g~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~--~~~g~l~~~~~g~~~~~~~---~~~~~Ng~~~s~d~~~l  162 (295)
T d2ghsa1          88 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAE--TGAGSIYHVAKGKVTKLFA---DISIPNSICFSPDGTTG  162 (295)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCC--TTCEEEEEEETTEEEEEEE---EESSEEEEEECTTSCEE
T ss_pred             ceeeEEeeeecCCCcccceeeEECCCCCEEEEecccccc--ccceeEeeecCCcEEEEee---ccCCcceeeecCCCceE
Confidence            998887543322    22333333467777754322211  2334455555565554421   1111122222   3457


Q ss_pred             EEEcccccCCccCCcEEEEeCCC--CCeee----ccccc-cCC-CceeEEEECCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145          257 LVTEGWLWPFFVSPRGQVYDPST--DNWES----MAVGL-REG-WTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETI  328 (402)
Q Consensus       257 y~~gG~~~~~~~~~~~~~yd~~~--~~W~~----~~~~~-~~~-~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~  328 (402)
                      |+....      ...+++|+...  +....    ..... ... -.+.++-.+|.||+. ......|.+||++.....++
T Consensus       163 ~~~dt~------~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva-~~~~g~V~~~dp~G~~~~~i  235 (295)
T d2ghsa1         163 YFVDTK------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA-RWGEGAVDRYDTDGNHIARY  235 (295)
T ss_dssp             EEEETT------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE-EETTTEEEEECTTCCEEEEE
T ss_pred             EEeecc------cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEee-eeCCCceEEecCCCcEeeEe
Confidence            776442      34688887642  22211    11101 111 112223347888876 33355899999998877777


Q ss_pred             CCCCCCccccCCeEEEEe---CCEEEEEecC
Q 040145          329 EGPPLPEQICKPFAVNAC---DCRVYVVGRN  356 (402)
Q Consensus       329 ~~~~~p~~~~~~~~~~~~---~~~i~v~GG~  356 (402)
                      .   +|..  ...+++.-   .+.|||....
T Consensus       236 ~---lP~~--~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         236 E---VPGK--QTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             E---CSCS--BEEEEEEESTTSCEEEEEEBC
T ss_pred             c---CCCC--ceEEEEEeCCCCCEEEEEECC
Confidence            5   5532  22233332   2569988653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.31  E-value=0.023  Score=48.24  Aligned_cols=192  Identities=9%  Similarity=0.065  Sum_probs=94.1

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+++.|+.+.    .+.+||..+........+....    ....++....++..++.+|.+.     ...+.++|..+
T Consensus        69 ~g~~latg~~dg----~i~iwd~~~~~~~~~~~~~~~~----~~v~~v~~s~d~~~l~~~~~~~-----~~~~~v~~~~~  135 (311)
T d1nr0a1          69 SGYYCASGDVHG----NVRIWDTTQTTHILKTTIPVFS----GPVKDISWDSESKRIAAVGEGR-----ERFGHVFLFDT  135 (311)
T ss_dssp             TSSEEEEEETTS----EEEEEESSSTTCCEEEEEECSS----SCEEEEEECTTSCEEEEEECCS-----SCSEEEEETTT
T ss_pred             CCCeEeccccCc----eEeeeeeecccccccccccccc----Cccccccccccccccccccccc-----ccccccccccc
Confidence            444555554332    3777888776542211111100    1233444444666666665422     22466777776


Q ss_pred             CceeecCCCcccccc-eEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEE
Q 040145          184 NRWTVMNKMITARSF-FASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLV  258 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~  258 (402)
                      ++-..  .+...... .+++.. ++ .+++.|+.      ...+.+||..+..-...  ..........+..  ++.+++
T Consensus       136 ~~~~~--~l~~h~~~v~~v~~~~~~~~~l~sgs~------d~~i~i~d~~~~~~~~~--~~~~~~~i~~v~~~p~~~~l~  205 (311)
T d1nr0a1         136 GTSNG--NLTGQARAMNSVDFKPSRPFRIISGSD------DNTVAIFEGPPFKFKST--FGEHTKFVHSVRYNPDGSLFA  205 (311)
T ss_dssp             CCBCB--CCCCCSSCEEEEEECSSSSCEEEEEET------TSCEEEEETTTBEEEEE--ECCCSSCEEEEEECTTSSEEE
T ss_pred             ccccc--cccccccccccccccccceeeeccccc------ccccccccccccccccc--cccccccccccccCccccccc
Confidence            64322  12111111 222222 23 45666665      34578899887653322  1111122223333  667777


Q ss_pred             EcccccCCccCCcEEEEeCCCCCeee-cccc-c-cCCCcee--EEEE--CCEEEEEeccCCcEEEEEeCCCCce
Q 040145          259 TEGWLWPFFVSPRGQVYDPSTDNWES-MAVG-L-REGWTGS--SVVV--YEHLFVVSELERMKLKVYDPSTDSW  325 (402)
Q Consensus       259 ~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~-~-~~~~~~~--~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W  325 (402)
                      .|+.+      ..+..||..+++-.. +... . ..+....  ++.+  +++.++.|+. ...+.+||..+.+-
T Consensus       206 ~~~~d------~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~-Dg~v~iwd~~t~~~  272 (311)
T d1nr0a1         206 STGGD------GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-DKTIKIWNVATLKV  272 (311)
T ss_dssp             EEETT------SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTTEE
T ss_pred             ccccc------ccccccccccccccccccccccccccccccccccccCCCCCEEEEEeC-CCeEEEEECCCCcE
Confidence            76643      368889987764322 1111 1 1111111  2333  5677777775 45799999987753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.29  E-value=0.033  Score=48.40  Aligned_cols=194  Identities=8%  Similarity=0.052  Sum_probs=99.6

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+++.++.+    ..+.+||..++++..+..+....    ..-.++.+..++..++.||.+       ..+.+||..+
T Consensus        18 dg~~la~~~~~----~~i~iw~~~~~~~~~~~~l~gH~----~~V~~l~fsp~~~~l~s~s~D-------~~i~vWd~~~   82 (371)
T d1k8kc_          18 DRTQIAICPNN----HEVHIYEKSGNKWVQVHELKEHN----GQVTGVDWAPDSNRIVTCGTD-------RNAYVWTLKG   82 (371)
T ss_dssp             TSSEEEEECSS----SEEEEEEEETTEEEEEEEEECCS----SCEEEEEEETTTTEEEEEETT-------SCEEEEEEET
T ss_pred             CCCEEEEEeCC----CEEEEEECCCCCEEEEEEecCCC----CCEEEEEECCCCCEEEEEECC-------CeEEEEeecc
Confidence            44555555332    24778998888876655443111    122334443466666777652       2689999999


Q ss_pred             CceeecCCCccccc-ceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEE
Q 040145          184 NRWTVMNKMITARS-FFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVT  259 (402)
Q Consensus       184 ~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~  259 (402)
                      +.|.....+..... -.++... +++.+++|+.++    .-.++.++.....+.........+.....+.+  ++++++.
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~----~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s  158 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR----VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  158 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS----SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccceeecccC----cceeeeeecccccccccccccccccccccccccccccceec
Confidence            98886544433222 2233332 455556655422    23345555555555443322222222223333  5677777


Q ss_pred             cccccCCccCCcEEEEeCCCCCeeecccc------------cc--CCCce--eEEEE--CCEEEEEeccCCcEEEEEeCC
Q 040145          260 EGWLWPFFVSPRGQVYDPSTDNWESMAVG------------LR--EGWTG--SSVVV--YEHLFVVSELERMKLKVYDPS  321 (402)
Q Consensus       260 gG~~~~~~~~~~~~~yd~~~~~W~~~~~~------------~~--~~~~~--~~~~~--~~~l~~~gg~~~~~~~~yd~~  321 (402)
                      |+.+      ..+..||............            ..  ....+  ..+.+  ++..++.|+. ...+..||..
T Consensus       159 ~s~D------~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-d~~i~iwd~~  231 (371)
T d1k8kc_         159 GSCD------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-DSTVCLADAD  231 (371)
T ss_dssp             EETT------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-TTEEEEEEGG
T ss_pred             cccC------cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc-CCcceEEeee
Confidence            7653      2577788765443221110            00  00011  11222  5666666665 4578889986


Q ss_pred             CC
Q 040145          322 TD  323 (402)
Q Consensus       322 ~~  323 (402)
                      +.
T Consensus       232 ~~  233 (371)
T d1k8kc_         232 KK  233 (371)
T ss_dssp             GT
T ss_pred             cc
Confidence            54

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=6.4e-05  Score=55.01  Aligned_cols=43  Identities=35%  Similarity=0.587  Sum_probs=37.5

Q ss_pred             CCCCCc----HHHHHHhhccCccchhhhhhhccHhHHHhhcCchHhHH
Q 040145           52 FIPGLP----DDVALNCLLRLPVESHAACRAVCKRWHLLLGNKERFFT   95 (402)
Q Consensus        52 ~~~~Lp----~dl~~~il~rlp~~~l~~~~~v~k~W~~l~~s~~~~~~   95 (402)
                      +++.||    +||+..||+.|+..++.++..|||+|+.++.++ .+..
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~-~lWk   56 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG-MLWK   56 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHT-THHH
T ss_pred             HHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCH-HHHH
Confidence            445666    699999999999999999999999999999988 6643

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.047  Score=46.60  Aligned_cols=181  Identities=11%  Similarity=0.036  Sum_probs=91.4

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce-EEEEE-CCEEEEEcCCCCCCCCCCeeEE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF-ASGVI-GGMIYVAGGSSADLFELDSAEV  226 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~  226 (402)
                      .++++..++..++.|+.+       ..+.+||....+.+....+....... ..... ++.+++.++.      ...+.+
T Consensus       101 ~~v~~s~dg~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------d~~i~~  167 (337)
T d1gxra_         101 RSCKLLPDGCTLIVGGEA-------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS------DGNIAV  167 (337)
T ss_dssp             EEEEECTTSSEEEEEESS-------SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET------TSCEEE
T ss_pred             EEEEEcCCCCEEEEeecc-------ccccccccccccccccccccccccccccccccccccccccccc------cccccc
Confidence            344454566777777652       27889998876655443333222222 22222 4555566554      346788


Q ss_pred             EcCCCCcEEEcCCCCCCCcceeEEE--ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CC
Q 040145          227 LDPVKGNWRTIASMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YE  302 (402)
Q Consensus       227 yd~~t~~W~~~~~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~  302 (402)
                      ||..++.-........  .......  .++..++.|+.+      ..+..||..+++=...-. .... . .++.+  ++
T Consensus       168 ~~~~~~~~~~~~~~~~--~~v~~l~~s~~~~~~~~~~~d------~~v~i~d~~~~~~~~~~~-~~~~-i-~~l~~~~~~  236 (337)
T d1gxra_         168 WDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD-FTSQ-I-FSLGYCPTG  236 (337)
T ss_dssp             EETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE-CSSC-E-EEEEECTTS
T ss_pred             cccccccccccccccc--ccccccccccccccccccccc------ccccccccccceeecccc-cccc-e-EEEEEcccc
Confidence            8988776332211111  1112222  256666666643      368889987764211111 1111 1 12222  56


Q ss_pred             EEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCcee
Q 040145          303 HLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHV  359 (402)
Q Consensus       303 ~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~  359 (402)
                      ..+++|+. ...+.+||..+..-.....  -.   ..-.++. ..+++.++.|+.++.
T Consensus       237 ~~l~~~~~-d~~i~i~d~~~~~~~~~~~--~~---~~i~~v~~s~~g~~l~s~s~Dg~  288 (337)
T d1gxra_         237 EWLAVGME-SSNVEVLHVNKPDKYQLHL--HE---SCVLSLKFAYCGKWFVSTGKDNL  288 (337)
T ss_dssp             SEEEEEET-TSCEEEEETTSSCEEEECC--CS---SCEEEEEECTTSSEEEEEETTSE
T ss_pred             cccceecc-ccccccccccccccccccc--cc---cccceEEECCCCCEEEEEeCCCe
Confidence            66666665 5578899998765433321  11   1112222 357777777776543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.01  E-value=0.03  Score=46.45  Aligned_cols=190  Identities=16%  Similarity=0.120  Sum_probs=94.0

Q ss_pred             eEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCc
Q 040145          106 WLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNR  185 (402)
Q Consensus       106 ~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~  185 (402)
                      ++||.+.    ....+.++|+.+.+....-+...      ..++.+....+..||+.++.       .+.+.+||..+++
T Consensus         3 ~~yV~~~----~~~~v~v~D~~t~~~~~~i~~g~------~p~~va~spdG~~l~v~~~~-------~~~i~v~d~~t~~   65 (301)
T d1l0qa2           3 FAYIANS----ESDNISVIDVTSNKVTATIPVGS------NPMGAVISPDGTKVYVANAH-------SNDVSIIDTATNN   65 (301)
T ss_dssp             EEEEEET----TTTEEEEEETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEEGG-------GTEEEEEETTTTE
T ss_pred             EEEEEEC----CCCEEEEEECCCCeEEEEEECCC------CceEEEEeCCCCEEEEEECC-------CCEEEEEECCCCc
Confidence            5677652    23348889999998654322321      11333333334568887654       2379999999876


Q ss_pred             eeecCCCcccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEccc
Q 040145          186 WTVMNKMITARSFFASGVI-G-GMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTEGW  262 (402)
Q Consensus       186 W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~  262 (402)
                      -..  .++.....+.++.. + ..+++.+..      ...+.++|..+++-...-...  ......... ++..+++.+.
T Consensus        66 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dg~~~~~~~~  135 (301)
T d1l0qa2          66 VIA--TVPAGSSPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNN  135 (301)
T ss_dssp             EEE--EEECSSSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEET
T ss_pred             eee--eeeccccccccccccccccccccccc------cceeeecccccceeeeecccc--ccceEEEeecCCCeeeeeec
Confidence            332  22222223344443 2 355555443      345778888877644321111  111222222 4544333332


Q ss_pred             ccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145          263 LWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETI  328 (402)
Q Consensus       263 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~  328 (402)
                      .     ...+..+|..+............. ......-++..++++..+...+.+++.........
T Consensus       136 ~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (301)
T d1l0qa2         136 G-----DKTVSVINTVTKAVINTVSVGRSP-KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT  195 (301)
T ss_dssp             T-----TTEEEEEETTTTEEEEEEECCSSE-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             c-----ccceeeeeccccceeeecccCCCc-eEEEeeccccceeeecccccccccccccceeeeec
Confidence            1     235677887776544332211111 11112223443334444456777777777655543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.021  Score=48.88  Aligned_cols=205  Identities=11%  Similarity=0.071  Sum_probs=98.9

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF  199 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  199 (402)
                      .+.+||....+......+....    .......+..++.+++.++.+       ..+.+||..+++-........ ....
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~d-------~~i~~~~~~~~~~~~~~~~~~-~~v~  187 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSA----PACYALAISPDSKVCFSCCSD-------GNIAVWDLHNQTLVRQFQGHT-DGAS  187 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSS----SCEEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCCS-SCEE
T ss_pred             cccccccccccccccccccccc----ccccccccccccccccccccc-------ccccccccccccccccccccc-cccc
Confidence            3677887766544333222111    122333343456666666542       268889988775322211111 1111


Q ss_pred             EEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEcccccCCccCCcEEEEeC
Q 040145          200 ASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL-DGKLLVTEGWLWPFFVSPRGQVYDP  277 (402)
Q Consensus       200 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~g~ly~~gG~~~~~~~~~~~~~yd~  277 (402)
                      +++. .++..++.|+.      ...+.+||..++.-...-....  .-.+.+.. ++..++.|+.+      ..+..||.
T Consensus       188 ~l~~s~~~~~~~~~~~------d~~v~i~d~~~~~~~~~~~~~~--~i~~l~~~~~~~~l~~~~~d------~~i~i~d~  253 (337)
T d1gxra_         188 CIDISNDGTKLWTGGL------DNTVRSWDLREGRQLQQHDFTS--QIFSLGYCPTGEWLAVGMES------SNVEVLHV  253 (337)
T ss_dssp             EEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEECSS--CEEEEEECTTSSEEEEEETT------SCEEEEET
T ss_pred             cccccccccccccccc------cccccccccccceeeccccccc--ceEEEEEcccccccceeccc------cccccccc
Confidence            2222 24555666654      4568889988765222111111  11122222 56666666543      36888998


Q ss_pred             CCCCeeeccccccCCCceeEEE--ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEe
Q 040145          278 STDNWESMAVGLREGWTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVG  354 (402)
Q Consensus       278 ~~~~W~~~~~~~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~G  354 (402)
                      .+..-.....  ..... ..+.  -+++.++.|+. ...+.+||..+.+  .+..  .... ..-.++. ..+++.++.|
T Consensus       254 ~~~~~~~~~~--~~~~i-~~v~~s~~g~~l~s~s~-Dg~i~iwd~~~~~--~~~~--~~~~-~~v~~~~~s~d~~~l~t~  324 (337)
T d1gxra_         254 NKPDKYQLHL--HESCV-LSLKFAYCGKWFVSTGK-DNLLNAWRTPYGA--SIFQ--SKES-SSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             TSSCEEEECC--CSSCE-EEEEECTTSSEEEEEET-TSEEEEEETTTCC--EEEE--EECS-SCEEEEEECTTSCEEEEE
T ss_pred             cccccccccc--ccccc-ceEEECCCCCEEEEEeC-CCeEEEEECCCCC--EEEE--ccCC-CCEEEEEEeCCCCEEEEE
Confidence            7765332211  11111 1222  36677777665 4578899987653  2221  1111 1112232 3467777888


Q ss_pred             cCcee
Q 040145          355 RNLHV  359 (402)
Q Consensus       355 G~~~~  359 (402)
                      |.++.
T Consensus       325 s~D~~  329 (337)
T d1gxra_         325 SGDKK  329 (337)
T ss_dssp             ETTSC
T ss_pred             eCCCe
Confidence            76544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.081  Score=44.51  Aligned_cols=172  Identities=10%  Similarity=0.018  Sum_probs=86.2

Q ss_pred             eEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECC
Q 040145          175 LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDG  254 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g  254 (402)
                      .+..||..+++...................++..++.|+.      ...+.+||..++.-...  +........++..++
T Consensus       182 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~--~~~h~~~v~~~~~~~  253 (355)
T d1nexb2         182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM------DTTIRIWDLENGELMYT--LQGHTALVGLLRLSD  253 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET------TSCEEEEETTTCCEEEE--ECCCSSCCCEEEECS
T ss_pred             eeeeeecccccceeeeeccccccccccccccceeeecccc------cceEEeeeccccccccc--ccccccccccccccc
Confidence            6788888877543322211111111222224455556654      34578899887764322  111122233455677


Q ss_pred             EEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCC
Q 040145          255 KLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLP  334 (402)
Q Consensus       255 ~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p  334 (402)
                      +.++.|+.+      ..+..||..+..-..... ............++.+++.|.  .+.+.+||.++.+.....  ...
T Consensus       254 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~--d~~i~vwd~~tg~~~~~~--~~~  322 (355)
T d1nexb2         254 KFLVSAAAD------GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS--ENQFNIYNLRSGKLVHAN--ILK  322 (355)
T ss_dssp             SEEEEECTT------SEEEEEETTTCCEEEEEE-CTTCCCCCEEEECSSEEEEEE--TTEEEEEETTTCCBCCSC--TTT
T ss_pred             ceeeeeecc------cccccccccccceecccc-cCCceEEEEEcCCCCEEEEEe--CCEEEEEECCCCCEEEEE--ecC
Confidence            777777754      368889987654221111 111111112345777665544  347999999887543211  111


Q ss_pred             ccccCCeEEEEeCCEEEEEecCceeeeEEEEe
Q 040145          335 EQICKPFAVNACDCRVYVVGRNLHVAVGHITR  366 (402)
Q Consensus       335 ~~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~  366 (402)
                      .. ..-.++...++.+++.|+.+......+++
T Consensus       323 ~~-~~V~~v~~~~~~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         323 DA-DQIWSVNFKGKTLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             TC-SEEEEEEEETTEEEEEEESSSCEEEEEEE
T ss_pred             CC-CCEEEEEEcCCeEEEEEECCCcEEEEEEe
Confidence            11 11224445667766666655554333333

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.85  E-value=0.092  Score=43.26  Aligned_cols=225  Identities=15%  Similarity=0.082  Sum_probs=106.1

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      +.++|+.+..    ...+.+||..+.+-...-+..  .    ...+......+..+++.+..       ...+.++|..+
T Consensus        43 G~~l~v~~~~----~~~i~v~d~~t~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  105 (301)
T d1l0qa2          43 GTKVYVANAH----SNDVSIIDTATNNVIATVPAG--S----SPQGVAVSPDGKQVYVTNMA-------SSTLSVIDTTS  105 (301)
T ss_dssp             SSEEEEEEGG----GTEEEEEETTTTEEEEEEECS--S----SEEEEEECTTSSEEEEEETT-------TTEEEEEETTT
T ss_pred             CCEEEEEECC----CCEEEEEECCCCceeeeeecc--c----cccccccccccccccccccc-------cceeeeccccc
Confidence            5567776533    234888999887643321122  1    11233333223355554432       23688889888


Q ss_pred             CceeecCCCcccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc-CCCCCCCcceeEEEE-C-CEEEE
Q 040145          184 NRWTVMNKMITARSFFASGVI-G-GMIYVAGGSSADLFELDSAEVLDPVKGNWRTI-ASMGTNMASYDAAVL-D-GKLLV  258 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~~~~~~~~~~-~-g~ly~  258 (402)
                      ++....-  ............ + ..+++.+..      ...+.+++..+...... .....+   ...+.. + +.+|+
T Consensus       106 ~~~~~~~--~~~~~~~~~~~~~dg~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  174 (301)
T d1l0qa2         106 NTVAGTV--KTGKSPLGLALSPDGKKLYVTNNG------DKTVSVINTVTKAVINTVSVGRSP---KGIAVTPDGTKVYV  174 (301)
T ss_dssp             TEEEEEE--ECSSSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECCSSE---EEEEECTTSSEEEE
T ss_pred             ceeeeec--cccccceEEEeecCCCeeeeeecc------ccceeeeeccccceeeecccCCCc---eEEEeeccccceee
Confidence            7643321  111222233332 3 355555543      34567788887764433 222111   122222 3 34555


Q ss_pred             EcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE-CCEEEEEecc-CCcEEEEEeCCCCceeecCCCCCCcc
Q 040145          259 TEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV-YEHLFVVSEL-ERMKLKVYDPSTDSWETIEGPPLPEQ  336 (402)
Q Consensus       259 ~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gg~-~~~~~~~yd~~~~~W~~~~~~~~p~~  336 (402)
                      .+..      ......++........... ......+..+.. +..+|+.+.. ..+.+.+||..+.+-...  ++..  
T Consensus       175 ~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~--~~~~--  243 (301)
T d1l0qa2         175 ANFD------SMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR--IPVG--  243 (301)
T ss_dssp             EETT------TTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE--EECC--
T ss_pred             eccc------ccccccccccceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEE--EcCC--
Confidence            4332      1245566665554433322 111111112222 4455554322 246799999988753321  1121  


Q ss_pred             ccCCeEEEE-eCC-EEEEEecCceeeeEEEEecccccc
Q 040145          337 ICKPFAVNA-CDC-RVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       337 ~~~~~~~~~-~~~-~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                       ....+++. .+| +|||.++.++.    |.++|....
T Consensus       244 -~~~~~va~spdg~~l~va~~~~~~----i~v~D~~t~  276 (301)
T d1l0qa2         244 -PDPAGIAVTPDGKKVYVALSFCNT----VSVIDTATN  276 (301)
T ss_dssp             -SSEEEEEECTTSSEEEEEETTTTE----EEEEETTTT
T ss_pred             -CCEEEEEEeCCCCEEEEEECCCCe----EEEEECCCC
Confidence             12233443 354 58888775543    666665443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.79  E-value=0.11  Score=43.15  Aligned_cols=194  Identities=11%  Similarity=0.123  Sum_probs=103.1

Q ss_pred             EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCc----ccccceEEEEEC--CEEEEE-cCCCCCCCCCC
Q 040145          150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMI----TARSFFASGVIG--GMIYVA-GGSSADLFELD  222 (402)
Q Consensus       150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~----~~r~~~~~~~~~--~~iyv~-GG~~~~~~~~~  222 (402)
                      .+++..++.|||....       .+.+.+||+..+.-+..+...    ........+..+  +..++. .+.      ..
T Consensus        27 gvavd~dg~i~VaD~~-------n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~------~~   93 (279)
T d1q7fa_          27 GVAVNAQNDIIVADTN-------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP------TH   93 (279)
T ss_dssp             EEEECTTCCEEEEEGG-------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG------GC
T ss_pred             EEEEcCCCCEEEEECC-------CCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCC------cc
Confidence            3344357889998643       347999998743222222211    112223334332  343333 222      34


Q ss_pred             eeEEEcCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE-EEE
Q 040145          223 SAEVLDPVKGNWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS-VVV  300 (402)
Q Consensus       223 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~  300 (402)
                      .+..++.....+......... .....++ .+|.+|+....      ...+.+||+....-..+............ +--
T Consensus        94 ~i~~~~~~g~~~~~~~~~~~~-~p~~~avd~~G~i~v~~~~------~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~  166 (279)
T d1q7fa_          94 QIQIYNQYGQFVRKFGATILQ-HPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND  166 (279)
T ss_dssp             EEEEECTTSCEEEEECTTTCS-CEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECS
T ss_pred             ccccccccccceeecCCCccc-ccceeccccCCcEEEEeec------cceeeEeccCCceeecccccccccccceeeecc
Confidence            677888876666655322111 1122222 36788887553      23678898876544444321111111112 223


Q ss_pred             CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEecccc
Q 040145          301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTS  370 (402)
Q Consensus       301 ~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~  370 (402)
                      ++.+|+.... ...+++||+..+...++..   +.......++++ .+|.|||.-...+.   .|..|++.
T Consensus       167 ~g~i~v~d~~-~~~V~~~d~~G~~~~~~g~---~g~~~~P~giavD~~G~i~Vad~~~~~---~v~~f~~~  230 (279)
T d1q7fa_         167 KQEIFISDNR-AHCVKVFNYEGQYLRQIGG---EGITNYPIGVGINSNGEILIADNHNNF---NLTIFTQD  230 (279)
T ss_dssp             SSEEEEEEGG-GTEEEEEETTCCEEEEESC---TTTSCSEEEEEECTTCCEEEEECSSSC---EEEEECTT
T ss_pred             ceeEEeeecc-ccceeeeecCCceeeeecc---cccccCCcccccccCCeEEEEECCCCc---EEEEECCC
Confidence            6789988664 6789999998876666652   112233445554 57789998654332   26666653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.58  E-value=0.058  Score=45.62  Aligned_cols=165  Identities=9%  Similarity=-0.012  Sum_probs=78.6

Q ss_pred             eEEEEECCCCceeecCCCcccccceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE
Q 040145          175 LVLKYEMQKNRWTVMNKMITARSFFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL  252 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~  252 (402)
                      .+.+||..+..-..+  +......-.+..+  ++++++.|+.      -..+.+||..+........+.........+.+
T Consensus        39 ~v~i~~~~~~~~~~~--~~~H~~~v~~~~~sp~g~~latg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  110 (311)
T d1nr0a1          39 SVYTVPVGSLTDTEI--YTEHSHQTTVAKTSPSGYYCASGDV------HGNVRIWDTTQTTHILKTTIPVFSGPVKDISW  110 (311)
T ss_dssp             EEEEEETTCSSCCEE--ECCCSSCEEEEEECTTSSEEEEEET------TSEEEEEESSSTTCCEEEEEECSSSCEEEEEE
T ss_pred             EEEEEECCCCceeEE--EcCCCCCEEEEEEeCCCCeEecccc------CceEeeeeeeccccccccccccccCccccccc
Confidence            588899876542221  1111122222222  5677777876      35688999887764322112111112222222


Q ss_pred             --CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCce-eEEEE--CCE-EEEEeccCCcEEEEEeCCCCcee
Q 040145          253 --DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTG-SSVVV--YEH-LFVVSELERMKLKVYDPSTDSWE  326 (402)
Q Consensus       253 --~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~-~~~~~--~~~-l~~~gg~~~~~~~~yd~~~~~W~  326 (402)
                        ++++++.+|...    ...+.++|..+.+-...   +...... ..+.+  ++. +++.|+. ...+.+||..+.+-.
T Consensus       111 s~d~~~l~~~~~~~----~~~~~v~~~~~~~~~~~---l~~h~~~v~~v~~~~~~~~~l~sgs~-d~~i~i~d~~~~~~~  182 (311)
T d1nr0a1         111 DSESKRIAAVGEGR----ERFGHVFLFDTGTSNGN---LTGQARAMNSVDFKPSRPFRIISGSD-DNTVAIFEGPPFKFK  182 (311)
T ss_dssp             CTTSCEEEEEECCS----SCSEEEEETTTCCBCBC---CCCCSSCEEEEEECSSSSCEEEEEET-TSCEEEEETTTBEEE
T ss_pred             cccccccccccccc----ccccccccccccccccc---ccccccccccccccccceeeeccccc-ccccccccccccccc
Confidence              567666666421    12466777766543211   1111111 12333  344 4555554 457899999875433


Q ss_pred             ecCCCCCCccccCCeEEEE-eCCEEEEEecCcee
Q 040145          327 TIEGPPLPEQICKPFAVNA-CDCRVYVVGRNLHV  359 (402)
Q Consensus       327 ~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~  359 (402)
                      ..-  ... . ..-.++.. .++++++.|+.++.
T Consensus       183 ~~~--~~~-~-~~i~~v~~~p~~~~l~~~~~d~~  212 (311)
T d1nr0a1         183 STF--GEH-T-KFVHSVRYNPDGSLFASTGGDGT  212 (311)
T ss_dssp             EEE--CCC-S-SCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccc--ccc-c-ccccccccCcccccccccccccc
Confidence            322  111 0 11122222 36677777775543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.52  E-value=0.16  Score=41.85  Aligned_cols=99  Identities=13%  Similarity=0.047  Sum_probs=53.1

Q ss_pred             CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEE-ECCEEEEEeccCCcEEEEEeCCCCceeecCCC
Q 040145          253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV-VYEHLFVVSELERMKLKVYDPSTDSWETIEGP  331 (402)
Q Consensus       253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~  331 (402)
                      ++++++.|+.+      ..+..||+.+++...+............+. -++..++.|+. ...+..||..++....... 
T Consensus       147 ~~~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~-  218 (299)
T d1nr0a2         147 DKQFVAVGGQD------SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVANNFELAHTN-  218 (299)
T ss_dssp             TSCEEEEEETT------SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEEGGGTTEESCCC-
T ss_pred             ccccccccccc------cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc-
Confidence            66777777653      368899988776555433111111111222 24566666654 4579999987765433221 


Q ss_pred             CCCccccCCeEEE-EeCCEEEEEecCcee
Q 040145          332 PLPEQICKPFAVN-ACDCRVYVVGRNLHV  359 (402)
Q Consensus       332 ~~p~~~~~~~~~~-~~~~~i~v~GG~~~~  359 (402)
                      .+......-.+++ ..++++++.|+.++.
T Consensus       219 ~~~~h~~~v~~l~~s~~~~~l~sgs~dg~  247 (299)
T d1nr0a2         219 SWTFHTAKVACVSWSPDNVRLATGSLDNS  247 (299)
T ss_dssp             CCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccceEEEcCCCE
Confidence            2221111112333 357788888886654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.17  Score=42.07  Aligned_cols=177  Identities=13%  Similarity=0.065  Sum_probs=89.7

Q ss_pred             eEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECC
Q 040145          175 LVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDG  254 (402)
Q Consensus       175 ~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g  254 (402)
                      .+.++|+...+-..  .+............++..++.|+.      -..+.+||..+.+-...  .........+...++
T Consensus       158 ~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~------dg~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~  227 (342)
T d2ovrb2         158 MVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSL------DTSIRVWDVETGNCIHT--LTGHQSLTSGMELKD  227 (342)
T ss_dssp             CEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEET------TSCEEEEETTTCCEEEE--ECCCCSCEEEEEEET
T ss_pred             eEEEeecccceeeE--EEcCcccccccccCCCCEEEEEeC------CCeEEEeecccceeeeE--ecccccceeEEecCC
Confidence            57778876554221  111111223334456666677765      34578899887653322  111112223344455


Q ss_pred             EEEEEcccccCCccCCcEEEEeCCCCCeee-ccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceee-cCCCC
Q 040145          255 KLLVTEGWLWPFFVSPRGQVYDPSTDNWES-MAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWET-IEGPP  332 (402)
Q Consensus       255 ~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~-~~~~~  332 (402)
                      .+++.|+.+      ..+..||..+.+-.. +............+..++.+++.|+. ...+.+||..+.+-.. +....
T Consensus       228 ~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~-Dg~i~iwd~~tg~~i~~~~~~~  300 (342)
T d2ovrb2         228 NILVSGNAD------STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD-DGTVKLWDLKTGEFIRNLVTLE  300 (342)
T ss_dssp             TEEEEEETT------SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEET-TSEEEEEETTTCCEEEEEEECT
T ss_pred             CEEEEEcCC------CEEEEEecccccccccccccceeeeceeecccCCCeeEEEcC-CCEEEEEECCCCCEEEEEeccc
Confidence            666666643      368899987765332 22211112222234567777777776 4679999998876432 22111


Q ss_pred             CCccccCCeEEEE-eCCEEEEEecCcee--eeEEEEecc
Q 040145          333 LPEQICKPFAVNA-CDCRVYVVGRNLHV--AVGHITRLS  368 (402)
Q Consensus       333 ~p~~~~~~~~~~~-~~~~i~v~GG~~~~--~~~~v~~~~  368 (402)
                      .+.....-.++.. .++.+++.|+.+..  ...-+++||
T Consensus       301 ~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            1111011113333 35566667765543  334566655

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.38  E-value=0.21  Score=41.70  Aligned_cols=202  Identities=10%  Similarity=0.017  Sum_probs=104.8

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR  235 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  235 (402)
                      ++.||.+--.       ...+++||+.+++-+... ++. .....+..-++.+++..        ...+..||+.+++.+
T Consensus        29 ~~~l~wvDi~-------~~~I~r~d~~~g~~~~~~-~~~-~~~~i~~~~dg~l~va~--------~~gl~~~d~~tg~~~   91 (295)
T d2ghsa1          29 SGTAWWFNIL-------ERELHELHLASGRKTVHA-LPF-MGSALAKISDSKQLIAS--------DDGLFLRDTATGVLT   91 (295)
T ss_dssp             TTEEEEEEGG-------GTEEEEEETTTTEEEEEE-CSS-CEEEEEEEETTEEEEEE--------TTEEEEEETTTCCEE
T ss_pred             CCEEEEEECC-------CCEEEEEECCCCeEEEEE-CCC-CcEEEEEecCCCEEEEE--------eCccEEeecccceee
Confidence            6778776422       347999999998654432 121 11122223467777754        346899999999998


Q ss_pred             EcCCCCCCC----cceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECC-EEEEEecc
Q 040145          236 TIASMGTNM----ASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYE-HLFVVSEL  310 (402)
Q Consensus       236 ~~~~~~~~~----~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~l~~~gg~  310 (402)
                      .+.......    .....+--+|.||+.......  .......|....++.+.+...... ..+.+..-++ .+|+.. .
T Consensus        92 ~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~--~~~~g~l~~~~~g~~~~~~~~~~~-~Ng~~~s~d~~~l~~~d-t  167 (295)
T d2ghsa1          92 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA--ETGAGSIYHVAKGKVTKLFADISI-PNSICFSPDGTTGYFVD-T  167 (295)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC--CTTCEEEEEEETTEEEEEEEEESS-EEEEEECTTSCEEEEEE-T
T ss_pred             EEeeeecCCCcccceeeEECCCCCEEEEeccccc--cccceeEeeecCCcEEEEeeccCC-cceeeecCCCceEEEee-c
Confidence            875543322    222222237888875433221  122345555556665555432221 1122222234 466653 3


Q ss_pred             CCcEEEEEeCCCCc--eeecCC--CCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEecccccccCceeeeEEEEeC
Q 040145          311 ERMKLKVYDPSTDS--WETIEG--PPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDA  385 (402)
Q Consensus       311 ~~~~~~~yd~~~~~--W~~~~~--~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~~~~~~~~~W~~~~~  385 (402)
                      ....+++|+.+.+.  ...-..  ...+......-++++ .+|.|+|..-..    +.|.+|||..+      ..+.+..
T Consensus       168 ~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~----g~V~~~dp~G~------~~~~i~l  237 (295)
T d2ghsa1         168 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE----GAVDRYDTDGN------HIARYEV  237 (295)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT----TEEEEECTTCC------EEEEEEC
T ss_pred             ccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC----CceEEecCCCc------EeeEecC
Confidence            46789988764321  110000  011111122234444 577899873211    24899998655      5667777


Q ss_pred             CCC
Q 040145          386 PDN  388 (402)
Q Consensus       386 ~~~  388 (402)
                      |.+
T Consensus       238 P~~  240 (295)
T d2ghsa1         238 PGK  240 (295)
T ss_dssp             SCS
T ss_pred             CCC
Confidence            654

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.13  E-value=0.079  Score=41.36  Aligned_cols=138  Identities=17%  Similarity=0.228  Sum_probs=77.7

Q ss_pred             CceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC-----CCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCC
Q 040145          147 GFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ-----KNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFEL  221 (402)
Q Consensus       147 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~-----t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~  221 (402)
                      .+.++++..+|.+|++=|.         -+|..++.     +..|..+   |... ..+...-++++|++-|.       
T Consensus         9 ~fDAv~~~~~G~~y~Fkg~---------~~wr~~~~~p~~Is~~Wpgl---p~~I-DAaf~~~~~~~yfFkG~-------   68 (192)
T d1qhua1           9 SFDATTLDDNGTMLFFKDE---------FVWKSHRGIRELISERWKNF---IGPV-DAAFRHGHTSVYLIKGD-------   68 (192)
T ss_dssp             CCSEEEECTTSCEEEEETT---------EEEETTTTEEEEHHHHSTTC---CSCC-SEEEEETTTEEEEEETT-------
T ss_pred             CEEEEEECCCCcEEEEeCC---------EEEEcCCCCeeEHhhhcCCC---CCCc-cEEEEcCCCcEEEEeCC-------
Confidence            4566666568899999765         34443322     2234333   3221 11222235799999873       


Q ss_pred             CeeEEEcCCCCcEE---Ec----CCCCCCCcceeEEE------ECCEEEEEcccccCCccCCcEEEEeCCCC-----Cee
Q 040145          222 DSAEVLDPVKGNWR---TI----ASMGTNMASYDAAV------LDGKLLVTEGWLWPFFVSPRGQVYDPSTD-----NWE  283 (402)
Q Consensus       222 ~~~~~yd~~t~~W~---~~----~~~~~~~~~~~~~~------~~g~ly~~gG~~~~~~~~~~~~~yd~~~~-----~W~  283 (402)
                       .+++|+..+....   .+    +.+|..  -.++..      -++++|++-|.        ..+.||..++     .|.
T Consensus        69 -~yw~y~~~~~~~gyPk~i~~~~~glp~~--iDAA~~~~~~~~~~~~~yfFkg~--------~yw~yd~~~~~~~~~~w~  137 (192)
T d1qhua1          69 -KVWVYTSEKNEKVYPKSLQDEFPGIPFP--LDAAVECHRGECQDEGILFFQGN--------RKWFWDLTTGTKKERSWP  137 (192)
T ss_dssp             -EEEEECC-------CEEHHHHSTTCCSS--CCEEEEECBBTBSSSEEEEEETT--------EEEEEETTTTEEEEECCT
T ss_pred             -EEEEEeCCccccCCCcChHHhCCCCCCC--ceEEEEccccccCCCeEEEEeCC--------eEEEEeCCCCCccccccc
Confidence             5778875443321   22    122321  122222      27899999874        6789998776     244


Q ss_pred             eccccccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          284 SMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      .++.      ...++..+|++|+|-|.   ..++||..+..
T Consensus       138 gip~------~daA~~~~g~~YfFkg~---~y~r~~~~~~~  169 (192)
T d1qhua1         138 AVGN------CTSALRWLGRYYCFQGN---QFLRFNPVSGE  169 (192)
T ss_dssp             TSCC------CSEEEEETTEEEEEETT---EEEEECTTTCC
T ss_pred             CcCC------cceeEEeCCcEEEEECC---EEEEEcCCcce
Confidence            3321      22345679999999665   79999988753

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.05  E-value=0.27  Score=41.45  Aligned_cols=236  Identities=13%  Similarity=0.052  Sum_probs=113.2

Q ss_pred             CCeEEEEEEeC---CCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEE
Q 040145          104 DPWLFVFAFHK---CTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYE  180 (402)
Q Consensus       104 ~~~l~~~gg~~---~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d  180 (402)
                      ++.+|+.....   .....+++++|+.++.+.......... ....-.+.+.-..++.+|+..+.        +.+.++|
T Consensus        28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~-~~g~P~Gl~~~~dg~~l~vad~~--------~~i~~~~   98 (314)
T d1pjxa_          28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNG-YGGIPAGCQCDRDANQLFVADMR--------LGLLVVQ   98 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETT-EECCEEEEEECSSSSEEEEEETT--------TEEEEEE
T ss_pred             CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCcccc-CCCcceeEEEeCCCCEEEEEECC--------CeEEEEe
Confidence            56788764221   111235889999998876543211000 00011233333223467776542        3688999


Q ss_pred             CCCCceeecCCCcccc---cceEEEE-ECCEEEEEcC--CC-------CCCCCCCeeEEEcCCCCcEEEcC-CCCCCCcc
Q 040145          181 MQKNRWTVMNKMITAR---SFFASGV-IGGMIYVAGG--SS-------ADLFELDSAEVLDPVKGNWRTIA-SMGTNMAS  246 (402)
Q Consensus       181 ~~t~~W~~~~~~~~~r---~~~~~~~-~~~~iyv~GG--~~-------~~~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~  246 (402)
                      +.++....+......+   .....++ -++.||+..-  ..       ........++.+++.. +...+. .+..+   
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~~p---  174 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFP---  174 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEESSE---
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCccee---
Confidence            9877655443222211   1122332 3578998631  10       0111134678888753 344332 22221   


Q ss_pred             eeEEE-ECC-----EEEEEcccccCCccCCcEEEEeCCCCC---eeeccccccCC-C---ceeEEEECCEEEEEeccCCc
Q 040145          247 YDAAV-LDG-----KLLVTEGWLWPFFVSPRGQVYDPSTDN---WESMAVGLREG-W---TGSSVVVYEHLFVVSELERM  313 (402)
Q Consensus       247 ~~~~~-~~g-----~ly~~gG~~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~~-~---~~~~~~~~~~l~~~gg~~~~  313 (402)
                      -+.+. -++     .||+....      ...+++||+..+.   +.++-...+.. .   .+.++-.+|+||+.. ...+
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~-~~~g  247 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN-WGSS  247 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE-ETTT
T ss_pred             eeeEECCCCCcceeEEEEEeec------ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEE-cCCC
Confidence            11111 122     47776432      3478888865431   22211111111 1   122233478999864 3366


Q ss_pred             EEEEEeCCCCceee-cCCCCCCccccCCeEEEEe-CC-EEEEEecCceeeeEEEEecc
Q 040145          314 KLKVYDPSTDSWET-IEGPPLPEQICKPFAVNAC-DC-RVYVVGRNLHVAVGHITRLS  368 (402)
Q Consensus       314 ~~~~yd~~~~~W~~-~~~~~~p~~~~~~~~~~~~-~~-~i~v~GG~~~~~~~~v~~~~  368 (402)
                      .|++||+++..-.. +.   +|.  ....+++.- ++ .|||.....+    .|+.++
T Consensus       248 ~I~~~dp~~g~~~~~i~---~p~--~~~t~~afg~d~~~lyVt~~~~g----~i~~~~  296 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIR---CPF--EKPSNLHFKPQTKTIFVTEHENN----AVWKFE  296 (314)
T ss_dssp             EEEEECTTCBSCSEEEE---CSS--SCEEEEEECTTSSEEEEEETTTT----EEEEEE
T ss_pred             EEEEEeCCCCEEEEEEE---CCC--CCEEEEEEeCCCCEEEEEECCCC----cEEEEE
Confidence            89999998765433 33   332  222333332 23 5888765433    366665

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.98  E-value=0.37  Score=40.62  Aligned_cols=201  Identities=13%  Similarity=0.022  Sum_probs=107.8

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeC-CCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTI-PAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQ  182 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l-~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~  182 (402)
                      ++.||+..    ....+++++||..+..... ....       ..-...++..+|.+|+....+.   .....+..+++.
T Consensus        50 ~G~Ly~~D----~~~g~I~ri~p~g~~~~~~~~~~~-------~~p~gla~~~dG~l~va~~~~~---~~~~~i~~~~~~  115 (319)
T d2dg1a1          50 QGQLFLLD----VFEGNIFKINPETKEIKRPFVSHK-------ANPAAIKIHKDGRLFVCYLGDF---KSTGGIFAATEN  115 (319)
T ss_dssp             TSCEEEEE----TTTCEEEEECTTTCCEEEEEECSS-------SSEEEEEECTTSCEEEEECTTS---SSCCEEEEECTT
T ss_pred             CCCEEEEE----CCCCEEEEEECCCCeEEEEEeCCC-------CCeeEEEECCCCCEEEEecCCC---ccceeEEEEcCC
Confidence            45688875    2334688999988764332 2222       1123344445788998753211   234578888988


Q ss_pred             CCceeecC-CCccc-ccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC-CCCCCCcceeEEEE--CC-EE
Q 040145          183 KNRWTVMN-KMITA-RSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA-SMGTNMASYDAAVL--DG-KL  256 (402)
Q Consensus       183 t~~W~~~~-~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~~--~g-~l  256 (402)
                      +....... ..... +..-..+.-++.+|+..-..........++.+++.....+.+. .+..    .....+  ++ .|
T Consensus       116 ~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~----pnGia~s~dg~~l  191 (319)
T d2dg1a1         116 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV----ANGIALSTDEKVL  191 (319)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS----EEEEEECTTSSEE
T ss_pred             CceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccce----eeeeeeccccceE
Confidence            87755433 22222 2222222346788876433222222556888998877766542 2221    223333  34 58


Q ss_pred             EEEcccccCCccCCcEEEEeCCCCC---ee---eccccccCCC--ceeEEEECCEEEEEeccCCcEEEEEeCCCCceeec
Q 040145          257 LVTEGWLWPFFVSPRGQVYDPSTDN---WE---SMAVGLREGW--TGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETI  328 (402)
Q Consensus       257 y~~gG~~~~~~~~~~~~~yd~~~~~---W~---~~~~~~~~~~--~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~  328 (402)
                      |+.-..      .+.+++||...+.   ..   ..........  .+.++-.+|+||+... ....|.+||++.+.-.++
T Consensus       192 yvad~~------~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~-~~g~V~~~~p~G~~l~~i  264 (319)
T d2dg1a1         192 WVTETT------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY-GQGRVLVFNKRGYPIGQI  264 (319)
T ss_dssp             EEEEGG------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE-TTTEEEEECTTSCEEEEE
T ss_pred             EEeccc------CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc-CCCEEEEECCCCcEEEEE
Confidence            887543      3478899875431   11   1111111111  1222334788998743 356899999986655555


Q ss_pred             C
Q 040145          329 E  329 (402)
Q Consensus       329 ~  329 (402)
                      .
T Consensus       265 ~  265 (319)
T d2dg1a1         265 L  265 (319)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.27  Score=38.21  Aligned_cols=146  Identities=12%  Similarity=0.095  Sum_probs=80.6

Q ss_pred             ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee------cCCCcccccceEEEE-ECCEEEEEcCCCCCCCC
Q 040145          148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV------MNKMITARSFFASGV-IGGMIYVAGGSSADLFE  220 (402)
Q Consensus       148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~------~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~  220 (402)
                      +-+++. .+|.+|++-|.         .+|.++.....+..      -+.+|.. ...+... .++++|++-|.      
T Consensus        11 ~DAv~~-~~g~~y~Fkg~---------~~wr~~~~~~~~~p~~i~~~w~~lp~~-IDAAf~~~~~~~~yffkg~------   73 (192)
T d1pexa_          11 LDAITS-LRGETMIFKDR---------FFWRLHPQQVDAELFLTKSFWPELPNR-IDAAYEHPSHDLIFIFRGR------   73 (192)
T ss_dssp             CSEEEE-ETTEEEEEETT---------EEEEECSSSSCCEEEEHHHHCTTSCSS-CCEEEEETTTTEEEEEETT------
T ss_pred             EEEEEE-cCCeEEEEECC---------EEEEEcCCCCCCcccchhhhCcCCCCc-ccceEEEcCCCEEEEEcCC------
Confidence            434443 48999999775         56666654332221      1233321 1111111 26788888763      


Q ss_pred             CCeeEEEcCCCCcE---EEcCC--CCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCee-----eccc
Q 040145          221 LDSAEVLDPVKGNW---RTIAS--MGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-----SMAV  287 (402)
Q Consensus       221 ~~~~~~yd~~t~~W---~~~~~--~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-----~~~~  287 (402)
                        .+++|+..+...   +.+..  +|.......++..   ++++|++-|.        ..+.||..++.=.     .+..
T Consensus        74 --~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~--------~y~~y~~~~~~~~~~~pk~I~~  143 (192)
T d1pexa_          74 --KFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN--------QVWRYDDTNHIMDKDYPRLIEE  143 (192)
T ss_dssp             --EEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT--------EEEEEETTTTEECSSCCCBHHH
T ss_pred             --EEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCC--------EEEEEcCccccccCCCcEEHhh
Confidence              567887654332   23333  2222223334433   6899999773        6789987665321     1211


Q ss_pred             ---cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          288 ---GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       288 ---~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                         .+|. ...++...+|++|+|-|.   ..++||..+++
T Consensus       144 ~w~gvp~-~vdAa~~~~g~~YfF~g~---~y~r~~~~~~~  179 (192)
T d1pexa_         144 DFPGIGD-KVDAVYEKNGYIYFFNGP---IQFEYSIWSNR  179 (192)
T ss_dssp             HSTTSCS-CCSEEEEETTEEEEEETT---EEEEEETTTTE
T ss_pred             cCCCCCC-CceEEEEeCCEEEEEECC---EEEEEeCCcCe
Confidence               1222 222344569999999765   79999987764

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.3  Score=38.00  Aligned_cols=146  Identities=12%  Similarity=0.098  Sum_probs=80.9

Q ss_pred             ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCcee--ec----CCCcccccceEEEEE--CCEEEEEcCCCCCCC
Q 040145          148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWT--VM----NKMITARSFFASGVI--GGMIYVAGGSSADLF  219 (402)
Q Consensus       148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~  219 (402)
                      +-+++. .+|.+|++-|.         .+|.++.......  .+    +.+|...  -++...  ++++|++-|      
T Consensus        14 fDAv~~-~~G~~y~Fkg~---------~~wr~~~~~~~~~p~~i~~~w~glp~~I--DAAf~~~~~~~~yfFkG------   75 (195)
T d1su3a2          14 FDAITT-IRGEVMFFKDR---------FYMRTNPFYPEVELNFISVFWPQLPNGL--EAAYEFADRDEVRFFKG------   75 (195)
T ss_dssp             CSEEEE-ETTEEEEEETT---------EEEECCTTSSSCEEEEGGGTCTTSCSSC--CEEEEEGGGTEEEEEET------
T ss_pred             EeEEEE-cCCeEEEEeCC---------EEEEeeCCCCccCccchHhhCcCCCCcc--cceEEecCCcEEEEECC------
Confidence            445444 48999999775         4566555443321  11    2233221  122222  578999987      


Q ss_pred             CCCeeEEEcCCCCc---EEEcC---CCCCCCcceeEE-EE--CCEEEEEcccccCCccCCcEEEEeCCCCCeee-----c
Q 040145          220 ELDSAEVLDPVKGN---WRTIA---SMGTNMASYDAA-VL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-----M  285 (402)
Q Consensus       220 ~~~~~~~yd~~t~~---W~~~~---~~~~~~~~~~~~-~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-----~  285 (402)
                        ...++|+..+..   -..+.   .+|.......++ ..  ++++|++-|.        ..++||..+++-..     +
T Consensus        76 --~~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~--------~y~ry~~~~~~vd~gyPk~I  145 (195)
T d1su3a2          76 --NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN--------KYWRYDEYKRSMDPGYPKMI  145 (195)
T ss_dssp             --TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCSEEH
T ss_pred             --cEEEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCC--------EEEEEeccCccccCCccccc
Confidence              357778754321   11221   233332233333 32  6899999884        67999987764221     1


Q ss_pred             cc---cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCce
Q 040145          286 AV---GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSW  325 (402)
Q Consensus       286 ~~---~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W  325 (402)
                      ..   .+|.. ..++...+|++|++-|.   ..++||..+++-
T Consensus       146 ~~~w~Gvp~~-iDAAf~~~g~~YfFkg~---~y~r~~~~~~~v  184 (195)
T d1su3a2         146 AHDFPGIGHK-VDAVFMKDGFFYFFHGT---RQYKFDPKTKRI  184 (195)
T ss_dssp             HHHSTTSCSC-CSEEEEETTEEEEEETT---EEEEEETTTTEE
T ss_pred             ccccCCCCCC-ccEEEEECCeEEEEECC---EEEEEeCCcCEE
Confidence            11   12222 22344569999999775   799999877643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=95.77  E-value=0.11  Score=43.77  Aligned_cols=68  Identities=12%  Similarity=0.037  Sum_probs=38.8

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+++.+..+    ..+.+||..+++-..--.++...    .-.+.+....+..+|+.+..       .+.+.+||..+
T Consensus         7 ~~~~l~~~~~~----~~v~v~D~~t~~~~~t~~~~~~~----~p~~l~~spDG~~l~v~~~~-------~~~v~~~d~~t   71 (346)
T d1jmxb_           7 GHEYMIVTNYP----NNLHVVDVASDTVYKSCVMPDKF----GPGTAMMAPDNRTAYVLNNH-------YGDIYGIDLDT   71 (346)
T ss_dssp             TCEEEEEEETT----TEEEEEETTTTEEEEEEECSSCC----SSCEEEECTTSSEEEEEETT-------TTEEEEEETTT
T ss_pred             CCcEEEEEcCC----CEEEEEECCCCCEEEEEEcCCCC----CcceEEECCCCCEEEEEECC-------CCcEEEEeCcc
Confidence            44555555332    35899999999754322233111    11233333334567887654       24799999998


Q ss_pred             Cce
Q 040145          184 NRW  186 (402)
Q Consensus       184 ~~W  186 (402)
                      ++=
T Consensus        72 ~~~   74 (346)
T d1jmxb_          72 CKN   74 (346)
T ss_dssp             TEE
T ss_pred             Cee
Confidence            753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.62  E-value=0.43  Score=38.71  Aligned_cols=223  Identities=15%  Similarity=0.076  Sum_probs=110.4

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.+|+.....   ...+..+++....-.... ....  .  ...+.++ ..++.||+....       ...+.+++..+
T Consensus        24 dG~i~v~~~~~---~~~i~~~~~~~~~~~~~~-~~~~--~--~p~gvav-~~~g~i~v~d~~-------~~~i~~~~~~~   87 (260)
T d1rwia_          24 AGNVYVTSEGM---YGRVVKLATGSTGTTVLP-FNGL--Y--QPQGLAV-DGAGTVYVTDFN-------NRVVTLAAGSN   87 (260)
T ss_dssp             TCCEEEEECSS---SCEEEEEC----CEEECC-CCSC--C--SCCCEEE-CTTCCEEEEETT-------TEEEEECTTCS
T ss_pred             CCCEEEEEcCC---CCEEEEEcCCCceEEEec-cCCc--c--CceEEEE-cCCCCEEEeeee-------eceeeeeeecc
Confidence            56788775322   224556665554432222 1100  0  1123333 347789887543       12344444444


Q ss_pred             CceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcC--CCCCCCcceeEEE-ECCEEEEE
Q 040145          184 NRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIA--SMGTNMASYDAAV-LDGKLLVT  259 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~-~~g~ly~~  259 (402)
                      ..+...  ........++++ .+++||+....      ...+..+++....-....  .+..+.   ..++ -+|.+|+.
T Consensus        88 ~~~~~~--~~~~~~p~~iavd~~g~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~p~---~i~~~~~g~~~v~  156 (260)
T d1rwia_          88 NQTVLP--FDGLNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGLNDPD---GVAVDNSGNVYVT  156 (260)
T ss_dssp             CCEECC--CCSCCSEEEEEECTTCCEEEEEGG------GTEEEEECTTCSSCEECCCCSCCSCC---EEEECTTCCEEEE
T ss_pred             ceeeee--eeeeeecccccccccceeEeeccc------cccccccccccceeeeeeecccCCcc---eeeecCCCCEeee
Confidence            443321  111122234443 35688887432      345777887665433322  222221   2222 26788887


Q ss_pred             cccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccc
Q 040145          260 EGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQI  337 (402)
Q Consensus       260 gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~  337 (402)
                      ...      ...+..||+.......... . .......+.+  +|.||+..- ....+..|++.......+....+    
T Consensus       157 ~~~------~~~i~~~d~~~~~~~~~~~-~-~~~~p~gi~~d~~g~l~vsd~-~~~~i~~~~~~~~~~~~~~~~~~----  223 (260)
T d1rwia_         157 DTD------NNRVVKLEAESNNQVVLPF-T-DITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTSTVLPFTGL----  223 (260)
T ss_dssp             EGG------GTEEEEECTTTCCEEECCC-S-SCCSEEEEEECTTCCEEEEET-TTTEEEEECTTCSCCEECCCCSC----
T ss_pred             ccc------cccccccccccceeeeeec-c-ccCCCccceeeeeeeeeeeec-CCCEEEEEeCCCCeEEEEccCCC----
Confidence            543      2368999988765444432 1 1111122333  678988643 36789999998776665542222    


Q ss_pred             cCCeEEEEe-CCEEEEEecCceeeeEEEEecccc
Q 040145          338 CKPFAVNAC-DCRVYVVGRNLHVAVGHITRLSTS  370 (402)
Q Consensus       338 ~~~~~~~~~-~~~i~v~GG~~~~~~~~v~~~~~~  370 (402)
                      ...+++++. +|.|||.-..++    .|..++..
T Consensus       224 ~~P~~i~~d~~g~l~vad~~~~----rI~~i~~~  253 (260)
T d1rwia_         224 NTPLAVAVDSDRTVYVADRGND----RVVKLTSL  253 (260)
T ss_dssp             CCEEEEEECTTCCEEEEEGGGT----EEEEECCC
T ss_pred             CCeEEEEEeCCCCEEEEECCCC----EEEEEeCC
Confidence            233555553 578999854333    35555543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.54  E-value=0.15  Score=42.01  Aligned_cols=152  Identities=13%  Similarity=0.122  Sum_probs=82.2

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      .++++..++.+++.|+.+       ..+.+||..+++...+........-.+++.. +++.++.|+.      ...+.+|
T Consensus       140 ~~~~~s~~~~~l~~g~~d-------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~~  206 (299)
T d1nr0a2         140 SCVALSNDKQFVAVGGQD-------SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ------SRKVIPY  206 (299)
T ss_dssp             EEEEECTTSCEEEEEETT-------SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET------TSCEEEE
T ss_pred             cccccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccc------ccccccc
Confidence            344454567777777752       3788999888765543322222222233332 4455566654      3468899


Q ss_pred             cCCCCcEEEc-CCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCC--ceeEEEECC
Q 040145          228 DPVKGNWRTI-ASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGW--TGSSVVVYE  302 (402)
Q Consensus       228 d~~t~~W~~~-~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~--~~~~~~~~~  302 (402)
                      |..++..... ..+.........+.+  ++.+++.|+.+      ..+.+||+.+.....+........  ....+..++
T Consensus       207 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  280 (299)
T d1nr0a2         207 SVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD------NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE  280 (299)
T ss_dssp             EGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccceEEEcCC------CEEEEEECCCCCcceEEEecCCCCCcEEEEEECCC
Confidence            9887765432 233222222223222  67777777754      368999998766544322111111  112233456


Q ss_pred             EEEEEeccCCcEEEEEeC
Q 040145          303 HLFVVSELERMKLKVYDP  320 (402)
Q Consensus       303 ~l~~~gg~~~~~~~~yd~  320 (402)
                      ..++.||.+ ..|.+||.
T Consensus       281 ~~l~s~s~D-~~i~iWdl  297 (299)
T d1nr0a2         281 TTIVSAGQD-SNIKFWNV  297 (299)
T ss_dssp             TEEEEEETT-SCEEEEEC
T ss_pred             CEEEEEeCC-CEEEEEec
Confidence            666666653 46777765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.46  E-value=0.23  Score=41.30  Aligned_cols=89  Identities=18%  Similarity=0.108  Sum_probs=45.9

Q ss_pred             cEEEEeCCCCCeeeccccccCCCceeE-EEECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCC
Q 040145          271 RGQVYDPSTDNWESMAVGLREGWTGSS-VVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDC  348 (402)
Q Consensus       271 ~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~  348 (402)
                      .+..+|..++....... .+....... ....+..++++..  +.+.+||.++.+.....  +.+   ....+++ ..+|
T Consensus       220 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~i~v~d~~~~~~~~~~--~~~---~~~~~~~~s~dG  291 (337)
T d1pbyb_         220 GLLTMDLETGEMAMREV-RIMDVFYFSTAVNPAKTRAFGAY--NVLESFDLEKNASIKRV--PLP---HSYYSVNVSTDG  291 (337)
T ss_dssp             EEEEEETTTCCEEEEEE-EECSSCEEEEEECTTSSEEEEEE--SEEEEEETTTTEEEEEE--ECS---SCCCEEEECTTS
T ss_pred             cEEEEEcCCCcEEEEEe-cCCCcceEEEEecccceEEEEcc--ccEEEEECCCCcEEEEE--cCC---CCEEEEEECCCC
Confidence            57788888887665543 222222222 2222222333332  47899999987655432  233   2223444 3456


Q ss_pred             EEEEEecCceeeeEEEEeccccc
Q 040145          349 RVYVVGRNLHVAVGHITRLSTSE  371 (402)
Q Consensus       349 ~i~v~GG~~~~~~~~v~~~~~~~  371 (402)
                      +.+.+|+.+    ++|.+||...
T Consensus       292 ~~l~v~~~~----~~i~v~D~~t  310 (337)
T d1pbyb_         292 STVWLGGAL----GDLAAYDAET  310 (337)
T ss_dssp             CEEEEESBS----SEEEEEETTT
T ss_pred             CEEEEEeCC----CcEEEEECCC
Confidence            554556644    3467777544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.28  E-value=0.74  Score=39.26  Aligned_cols=187  Identities=12%  Similarity=0.083  Sum_probs=89.8

Q ss_pred             eEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccce
Q 040145          120 QWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFF  199 (402)
Q Consensus       120 ~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~  199 (402)
                      .+.++|..++.|..........    ....++....++..+++|+.+     ..-.++.++...+.+.........+..-
T Consensus        74 ~i~vWd~~~~~~~~~~~~~~~~----~~v~~i~~~p~~~~l~~~s~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~v  144 (371)
T d1k8kc_          74 NAYVWTLKGRTWKPTLVILRIN----RAARCVRWAPNEKKFAVGSGS-----RVISICYFEQENDWWVCKHIKKPIRSTV  144 (371)
T ss_dssp             CEEEEEEETTEEEEEEECCCCS----SCEEEEEECTTSSEEEEEETT-----SSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             eEEEEeeccccccccccccccc----ccccccccccccccceeeccc-----Ccceeeeeeccccccccccccccccccc
Confidence            3778888888887654333111    223344444466666666542     2224444454444444332222112222


Q ss_pred             -EEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCC-------CC---------CCCcceeEEEE--CCEEEEE
Q 040145          200 -ASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIAS-------MG---------TNMASYDAAVL--DGKLLVT  259 (402)
Q Consensus       200 -~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~-------~~---------~~~~~~~~~~~--~g~ly~~  259 (402)
                       ++... ++++++.|+.+      ..+.+||...........       .+         ........+.+  ++..++.
T Consensus       145 ~~v~~~p~~~~l~s~s~D------~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s  218 (371)
T d1k8kc_         145 LSLDWHPNSVLLAAGSCD------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW  218 (371)
T ss_dssp             EEEEECTTSSEEEEEETT------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred             ccccccccccceeccccC------cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccc
Confidence             22222 45666777653      346677765543221100       00         01111112222  5666666


Q ss_pred             cccccCCccCCcEEEEeCCCCCeeeccccccCC-CceeE-EEECCEEEEEeccCCcEEEEEeCCCCceeecC
Q 040145          260 EGWLWPFFVSPRGQVYDPSTDNWESMAVGLREG-WTGSS-VVVYEHLFVVSELERMKLKVYDPSTDSWETIE  329 (402)
Q Consensus       260 gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~-~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~  329 (402)
                      |+.+      ..+..||..+..  .+....... ..... ..-++.+++.|..+...++.+|.....|....
T Consensus       219 ~~~d------~~i~iwd~~~~~--~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~  282 (371)
T d1k8kc_         219 VSHD------STVCLADADKKM--AVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGG  282 (371)
T ss_dssp             EETT------TEEEEEEGGGTT--EEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECC
T ss_pred             cccC------CcceEEeeeccc--ceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEee
Confidence            6643      368888886653  221111111 11112 23477776655433557888898888887654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.19  E-value=0.41  Score=40.16  Aligned_cols=153  Identities=18%  Similarity=0.117  Sum_probs=85.2

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.++++...     .+++++|...+...+++. .       .....++...+++.++++|...     -..+++||..+
T Consensus        14 dG~~~a~~~~-----g~v~v~d~~~~~~~~~~~-~-------~~v~~~~~spDg~~l~~~~~~~-----g~~v~v~d~~~   75 (360)
T d1k32a3          14 DGDLIAFVSR-----GQAFIQDVSGTYVLKVPE-P-------LRIRYVRRGGDTKVAFIHGTRE-----GDFLGIYDYRT   75 (360)
T ss_dssp             GGGCEEEEET-----TEEEEECTTSSBEEECSC-C-------SCEEEEEECSSSEEEEEEEETT-----EEEEEEEETTT
T ss_pred             CCCEEEEEEC-----CeEEEEECCCCcEEEccC-C-------CCEEEEEECCCCCEEEEEEcCC-----CCEEEEEECCC
Confidence            4555555432     258899998888877631 1       2234555556777766655422     23589999999


Q ss_pred             CceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccc
Q 040145          184 NRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGW  262 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~  262 (402)
                      +.-+++..-..  ....++.. +++.++.++.      ...+..++..+.....+...........+..-+|+.+++.+.
T Consensus        76 ~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~  147 (360)
T d1k32a3          76 GKAEKFEENLG--NVFAMGVDRNGKFAVVAND------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP  147 (360)
T ss_dssp             CCEEECCCCCC--SEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred             CcEEEeeCCCc--eEEeeeecccccccceecc------ccccccccccccceeeeeecccccccchhhccceeeeeeecc
Confidence            88776543221  12233332 4555555554      456888999888765543333322222233336766665443


Q ss_pred             ccC----CccCCcEEEEeCCCCCe
Q 040145          263 LWP----FFVSPRGQVYDPSTDNW  282 (402)
Q Consensus       263 ~~~----~~~~~~~~~yd~~~~~W  282 (402)
                      ...    ......+..||..+++=
T Consensus       148 ~~~~~~~~~~~~~~~v~d~~~~~~  171 (360)
T d1k32a3         148 LKHGETDGYVMQAIHVYDMEGRKI  171 (360)
T ss_dssp             ECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             ccccceeeccccceeeeccccCce
Confidence            221    11123567888887643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.12  E-value=0.97  Score=39.72  Aligned_cols=182  Identities=13%  Similarity=-0.006  Sum_probs=94.2

Q ss_pred             ceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCC-EEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccc
Q 040145          118 KIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREG-TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITAR  196 (402)
Q Consensus       118 ~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r  196 (402)
                      ...+.++|..+.+-...-+..       .....+++..+| .+|+. +.       ...+.+||..|++-+....++...
T Consensus        41 ~g~v~v~D~~t~~v~~~~~~g-------~~~~~v~fSpDG~~l~~~-s~-------dg~v~~~d~~t~~~~~~~~i~~~~  105 (432)
T d1qksa2          41 AGQIALIDGSTYEIKTVLDTG-------YAVHISRLSASGRYLFVI-GR-------DGKVNMIDLWMKEPTTVAEIKIGS  105 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECS-------SCEEEEEECTTSCEEEEE-ET-------TSEEEEEETTSSSCCEEEEEECCS
T ss_pred             CCEEEEEECCCCcEEEEEeCC-------CCeeEEEECCCCCEEEEE-cC-------CCCEEEEEeeCCCceEEEEEecCC
Confidence            345889999988764432222       112333444455 55554 43       127899999887655444443332


Q ss_pred             cceEEEEE-----CC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCC-----------CCCCcceeEEEECCE-EEE
Q 040145          197 SFFASGVI-----GG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASM-----------GTNMASYDAAVLDGK-LLV  258 (402)
Q Consensus       197 ~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----------~~~~~~~~~~~~~g~-ly~  258 (402)
                      .....+..     ++ .+|+.+..      ...+.+||..+++-......           +.++........+|. +++
T Consensus       106 ~~~~~~~s~~~SpDG~~l~vs~~~------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~v  179 (432)
T d1qksa2         106 EARSIETSKMEGWEDKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV  179 (432)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred             CCCCeEEecccCCCCCEEEEEcCC------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEE
Confidence            22233221     34 56776654      46788999998875443211           111111111122443 343


Q ss_pred             EcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeE--EEECCEEEEEeccCCcEEEEEeCCCCceee
Q 040145          259 TEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSS--VVVYEHLFVVSELERMKLKVYDPSTDSWET  327 (402)
Q Consensus       259 ~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~--~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~  327 (402)
                      ....      ...+..+|..+.+-..+.. .+....-..  ..-+|+.++++....+.+.+.|..+.....
T Consensus       180 s~~~------~~~i~~~d~~~~~~~~~~~-i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~  243 (432)
T d1qksa2         180 NVKE------TGKILLVDYTDLNNLKTTE-ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA  243 (432)
T ss_dssp             EETT------TTEEEEEETTCSSEEEEEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             EEcc------CCeEEEEEccCCCcceEEE-EcccCccccceECCCCCEEEEeccccceEEEeecccceEEE
Confidence            3321      2367888877654333332 222222122  233666555556557788899998776543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.89  E-value=0.83  Score=37.76  Aligned_cols=171  Identities=11%  Similarity=0.034  Sum_probs=83.0

Q ss_pred             EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceE
Q 040145          121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFA  200 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~  200 (402)
                      +..+|..+.+.........      ...........+..++.|+.+       ..+.+||..++.-...  +......-.
T Consensus       183 i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d-------~~i~i~d~~~~~~~~~--~~~h~~~v~  247 (355)
T d1nexb2         183 LIVWDVAQMKCLYILSGHT------DRIYSTIYDHERKRCISASMD-------TTIRIWDLENGELMYT--LQGHTALVG  247 (355)
T ss_dssp             EEEEETTTTEEEEEECCCS------SCEEEEEEETTTTEEEEEETT-------SCEEEEETTTCCEEEE--ECCCSSCCC
T ss_pred             eeeeecccccceeeeeccc------cccccccccccceeeeccccc-------ceEEeeeccccccccc--ccccccccc
Confidence            5667776665433221110      112233333355556666542       2688999888753321  111111122


Q ss_pred             EEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCC
Q 040145          201 SGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD  280 (402)
Q Consensus       201 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~  280 (402)
                      ....+++.++.|+.      -..+.+||..+..-.... -............++.+++.|. +      ..+.+||++++
T Consensus       248 ~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~-d------~~i~vwd~~tg  313 (355)
T d1nexb2         248 LLRLSDKFLVSAAA------DGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-E------NQFNIYNLRSG  313 (355)
T ss_dssp             EEEECSSEEEEECT------TSEEEEEETTTCCEEEEE-ECTTCCCCCEEEECSSEEEEEE-T------TEEEEEETTTC
T ss_pred             ccccccceeeeeec------ccccccccccccceeccc-ccCCceEEEEEcCCCCEEEEEe-C------CEEEEEECCCC
Confidence            33445666777765      346788898776532111 1111122233445777666553 2      36889999887


Q ss_pred             CeeeccccccCCCceeEEEECCEEEEEeccCCc-EEEEEeC
Q 040145          281 NWESMAVGLREGWTGSSVVVYEHLFVVSELERM-KLKVYDP  320 (402)
Q Consensus       281 ~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~~~-~~~~yd~  320 (402)
                      +.-..............+.-++.+++.|+.++. .++++|.
T Consensus       314 ~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~df  354 (355)
T d1nexb2         314 KLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDF  354 (355)
T ss_dssp             CBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEEEEC
T ss_pred             CEEEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEEeC
Confidence            643211101111111122345555555555443 4777774

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.82  E-value=0.37  Score=41.12  Aligned_cols=152  Identities=17%  Similarity=0.224  Sum_probs=75.2

Q ss_pred             EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-CCEEEEEcCCCCCCCCCCeeEEEc
Q 040145          150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GGMIYVAGGSSADLFELDSAEVLD  228 (402)
Q Consensus       150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd  228 (402)
                      +++...++.+++.|+.+       ..+.+||..+++......-... .-...... ++..++.|+.      ...+.++|
T Consensus       126 ~l~~s~~~~~l~s~~~d-------g~v~i~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~------~~~i~~~d  191 (388)
T d1erja_         126 SVCFSPDGKFLATGAED-------RLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSG------DRTVRIWD  191 (388)
T ss_dssp             EEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEET------TSEEEEEE
T ss_pred             EEEECCCCCcceecccc-------cccccccccccccccccccccc-ccccccccccccccccccc------ceeeeeee
Confidence            34444466777777753       2688999888765443211111 11122222 3344455543      45678888


Q ss_pred             CCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeec-cccc--cCCCcee--EEEE-
Q 040145          229 PVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESM-AVGL--REGWTGS--SVVV-  300 (402)
Q Consensus       229 ~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~--~~~~~~~--~~~~-  300 (402)
                      ..+..-.........  .......  ++.+++.|+.+      ..+..||..+...... ....  .......  .+.+ 
T Consensus       192 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  263 (388)
T d1erja_         192 LRTGQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT  263 (388)
T ss_dssp             TTTTEEEEEEECSSC--EEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred             ccccccccccccccc--cccccccCCCCCeEEEEcCC------CeEEEeecccCccceeeccccccccCCCCCEEEEEEC
Confidence            887654333221111  1122222  56677777653      3688899887765432 2111  1111111  1222 


Q ss_pred             -CCEEEEEeccCCcEEEEEeCCCCc
Q 040145          301 -YEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       301 -~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                       ++..++.|+. ...+.+||..+..
T Consensus       264 ~~~~~l~s~~~-d~~i~iwd~~~~~  287 (388)
T d1erja_         264 RDGQSVVSGSL-DRSVKLWNLQNAN  287 (388)
T ss_dssp             TTSSEEEEEET-TSEEEEEEC----
T ss_pred             CCCCEEEEEEC-CCcEEEEeccCCc
Confidence             5666666665 4578888886543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=94.73  E-value=0.97  Score=37.81  Aligned_cols=206  Identities=14%  Similarity=0.076  Sum_probs=103.2

Q ss_pred             EEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccc---ccceEEEEE--CCEEEEEcCCCCCCCCCCeeEE
Q 040145          152 SIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITA---RSFFASGVI--GGMIYVAGGSSADLFELDSAEV  226 (402)
Q Consensus       152 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  226 (402)
                      ++..+|.+|+..........+...+++||+.++.++........   -...++++-  ++.+|+..+       ...+.+
T Consensus        24 a~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-------~~~i~~   96 (314)
T d1pjxa_          24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------RLGLLV   96 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------TTEEEE
T ss_pred             EEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-------CCeEEE
Confidence            34357889987543211112345799999999987664322111   112334443  347888765       356889


Q ss_pred             EcCCCCcEEEcCCCCCCC--ccee-EEE-ECCEEEEEccccc---------CCccCCcEEEEeCCCCCeeeccccccCCC
Q 040145          227 LDPVKGNWRTIASMGTNM--ASYD-AAV-LDGKLLVTEGWLW---------PFFVSPRGQVYDPSTDNWESMAVGLREGW  293 (402)
Q Consensus       227 yd~~t~~W~~~~~~~~~~--~~~~-~~~-~~g~ly~~gG~~~---------~~~~~~~~~~yd~~~~~W~~~~~~~~~~~  293 (402)
                      +|+.+.....+.......  .... .++ -+|.||+......         .......++++++. ++...+...+..+ 
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~p-  174 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP-  174 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE-
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCccee-
Confidence            999877655443332222  1122 222 2689998632110         01112257778764 3455544322211 


Q ss_pred             ceeEEEECC-----EEEEEeccCCcEEEEEeCCCCc---eeecCCCCCCcc-ccCCeEEEE-eCCEEEEEecCceeeeEE
Q 040145          294 TGSSVVVYE-----HLFVVSELERMKLKVYDPSTDS---WETIEGPPLPEQ-ICKPFAVNA-CDCRVYVVGRNLHVAVGH  363 (402)
Q Consensus       294 ~~~~~~~~~-----~l~~~gg~~~~~~~~yd~~~~~---W~~~~~~~~p~~-~~~~~~~~~-~~~~i~v~GG~~~~~~~~  363 (402)
                      .+.+..-++     .||+... ....+++||...+.   +.++-. .++.. ....-++++ .+|+|||..-..    +.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~-~~~~i~~~d~~~~g~~~~~~~~~-~~~~~~~~~pdGiavD~~GnlyVa~~~~----g~  248 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAET-PTKKLWSYDIKGPAKIENKKVWG-HIPGTHEGGADGMDFDEDNNLLVANWGS----SH  248 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEET-TTTEEEEEEEEETTEEEEEEEEE-ECCCCSSCEEEEEEEBTTCCEEEEEETT----TE
T ss_pred             eeeEECCCCCcceeEEEEEee-cccceEEeeccCccccceeeEEE-EccccccccceeeEEecCCcEEEEEcCC----CE
Confidence            122222222     4776533 36789999865331   222110 11110 011123443 578899975322    34


Q ss_pred             EEecccccc
Q 040145          364 ITRLSTSEK  372 (402)
Q Consensus       364 v~~~~~~~~  372 (402)
                      |++|||...
T Consensus       249 I~~~dp~~g  257 (314)
T d1pjxa_         249 IEVFGPDGG  257 (314)
T ss_dssp             EEEECTTCB
T ss_pred             EEEEeCCCC
Confidence            889987644

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.68  E-value=1.1  Score=38.02  Aligned_cols=213  Identities=14%  Similarity=0.082  Sum_probs=97.4

Q ss_pred             EEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceE
Q 040145          121 WQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFA  200 (402)
Q Consensus       121 ~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~  200 (402)
                      +..+|....+......-..      ..........++..++.|+.       ...+.+||..+..-.......  .....
T Consensus       145 v~i~~~~~~~~~~~~~~h~------~~v~~~~~~~~~~~~~~~~~-------~~~i~~~d~~~~~~~~~~~~~--~~~~~  209 (388)
T d1erja_         145 IRIWDIENRKIVMILQGHE------QDIYSLDYFPSGDKLVSGSG-------DRTVRIWDLRTGQCSLTLSIE--DGVTT  209 (388)
T ss_dssp             EEEEETTTTEEEEEECCCS------SCEEEEEECTTSSEEEEEET-------TSEEEEEETTTTEEEEEEECS--SCEEE
T ss_pred             ccccccccccccccccccc------cccccccccccccccccccc-------ceeeeeeeccccccccccccc--ccccc
Confidence            6778877776544321110      11223333334555555543       236888998876543322111  11112


Q ss_pred             EEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc-CCCCC----CCcceeEEEE--CCEEEEEcccccCCccCCc
Q 040145          201 SGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI-ASMGT----NMASYDAAVL--DGKLLVTEGWLWPFFVSPR  271 (402)
Q Consensus       201 ~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~----~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~  271 (402)
                      +...  ++.+++.|+.      ...+.+||..+...... .....    .......+.+  ++..++.|+.+      ..
T Consensus       210 ~~~~~~~~~~l~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------~~  277 (388)
T d1erja_         210 VAVSPGDGKYIAAGSL------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD------RS  277 (388)
T ss_dssp             EEECSTTCCEEEEEET------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT------SE
T ss_pred             ccccCCCCCeEEEEcC------CCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC------Cc
Confidence            2222  4566677765      34578899887765332 11111    1111222222  56666666643      36


Q ss_pred             EEEEeCCCCCeeeccccc----------cCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccC
Q 040145          272 GQVYDPSTDNWESMAVGL----------REGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICK  339 (402)
Q Consensus       272 ~~~yd~~~~~W~~~~~~~----------~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~  339 (402)
                      +..||..+..-.......          .....-..+.+  ++.+++.|+. ...+.+||..+.+-...    +......
T Consensus       278 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~~~~----l~~H~~~  352 (388)
T d1erja_         278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DRGVLFWDKKSGNPLLM----LQGHRNS  352 (388)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TSEEEEEETTTCCEEEE----EECCSSC
T ss_pred             EEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC-CCEEEEEECCCCcEEEE----EeCCCCC
Confidence            788887655432211100          00001111222  5666666665 45799999987643221    1110011


Q ss_pred             CeEEEE-------eCCEEEEEecCceeeeEEEEec
Q 040145          340 PFAVNA-------CDCRVYVVGRNLHVAVGHITRL  367 (402)
Q Consensus       340 ~~~~~~-------~~~~i~v~GG~~~~~~~~v~~~  367 (402)
                      -.++..       .++.+++.||.+..  ..+|.+
T Consensus       353 V~~~~~~~~~~~spd~~~l~s~s~Dg~--I~iW~~  385 (388)
T d1erja_         353 VISVAVANGSSLGPEYNVFATGSGDCK--ARIWKY  385 (388)
T ss_dssp             EEEEEECSSCTTCTTCEEEEEEETTSE--EEEEEE
T ss_pred             EEEEEEecCcccCCCCCEEEEEeCCCE--EEEEee
Confidence            112222       26788888886644  334444

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.92  Score=37.22  Aligned_cols=146  Identities=14%  Similarity=0.158  Sum_probs=78.5

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR  235 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  235 (402)
                      ++..++.|+.+       ..+.+||..+++-.....  ...........++.+++.|+.      ...+.+||..+..-.
T Consensus       186 ~~~~l~s~~~d-------g~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~s~------d~~i~iwd~~~~~~~  250 (342)
T d2ovrb2         186 DGIHVVSGSLD-------TSIRVWDVETGNCIHTLT--GHQSLTSGMELKDNILVSGNA------DSTVKIWDIKTGQCL  250 (342)
T ss_dssp             CSSEEEEEETT-------SCEEEEETTTCCEEEEEC--CCCSCEEEEEEETTEEEEEET------TSCEEEEETTTCCEE
T ss_pred             CCCEEEEEeCC-------CeEEEeecccceeeeEec--ccccceeEEecCCCEEEEEcC------CCEEEEEeccccccc
Confidence            66667777653       268899988765332211  111111222334455666665      346889998876543


Q ss_pred             -EcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCee-eccccccCCCceeE--EEE--CCEEEEEec
Q 040145          236 -TIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWE-SMAVGLREGWTGSS--VVV--YEHLFVVSE  309 (402)
Q Consensus       236 -~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~--~~~--~~~l~~~gg  309 (402)
                       .+...............++.+++.|+.+      ..+.+||+.+++-. .+............  +..  ++.+++.|+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~D------g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~  324 (342)
T d2ovrb2         251 QTLQGPNKHQSAVTCLQFNKNFVITSSDD------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS  324 (342)
T ss_dssp             EEECSTTSCSSCEEEEEECSSEEEEEETT------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred             ccccccceeeeceeecccCCCeeEEEcCC------CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEe
Confidence             3333333333444555677777777753      36899999887643 22211111111111  222  455666665


Q ss_pred             cCC---cEEEEEeCCC
Q 040145          310 LER---MKLKVYDPST  322 (402)
Q Consensus       310 ~~~---~~~~~yd~~~  322 (402)
                      .++   ..++++|.+.
T Consensus       325 ~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         325 RNGTEETKLLVLDFDV  340 (342)
T ss_dssp             SSSSSCCEEEEEECCC
T ss_pred             CCCCCeeEEEEEeCCC
Confidence            543   3688888764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.66  E-value=0.85  Score=36.83  Aligned_cols=192  Identities=14%  Similarity=0.133  Sum_probs=97.2

Q ss_pred             eEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEE
Q 040145          149 RCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       149 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      ..+++..+|.+|+.....      ...+..+++.+..-..... ...-..+++++ -++.||+....      ...+.++
T Consensus        17 ~~vavd~dG~i~v~~~~~------~~~i~~~~~~~~~~~~~~~-~~~~~p~gvav~~~g~i~v~d~~------~~~i~~~   83 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGM------YGRVVKLATGSTGTTVLPF-NGLYQPQGLAVDGAGTVYVTDFN------NRVVTLA   83 (260)
T ss_dssp             EEEEECTTCCEEEEECSS------SCEEEEEC----CEEECCC-CSCCSCCCEEECTTCCEEEEETT------TEEEEEC
T ss_pred             CEEEEcCCCCEEEEEcCC------CCEEEEEcCCCceEEEecc-CCccCceEEEEcCCCCEEEeeee------eceeeee
Confidence            344554678899986542      2367777776654222211 11111123333 36788888643      2334555


Q ss_pred             cCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccc-cccCCCceeEEEECCEEE
Q 040145          228 DPVKGNWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV-GLREGWTGSSVVVYEHLF  305 (402)
Q Consensus       228 d~~t~~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~l~  305 (402)
                      +..+..+...  ......-...++ .+|.||+....      ...+..++.....-..... ....+ .+.++.-++++|
T Consensus        84 ~~~~~~~~~~--~~~~~~p~~iavd~~g~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~~~~g~~~  154 (260)
T d1rwia_          84 AGSNNQTVLP--FDGLNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGLNDP-DGVAVDNSGNVY  154 (260)
T ss_dssp             TTCSCCEECC--CCSCCSEEEEEECTTCCEEEEEGG------GTEEEEECTTCSSCEECCCCSCCSC-CEEEECTTCCEE
T ss_pred             eeccceeeee--eeeeeecccccccccceeEeeccc------cccccccccccceeeeeeecccCCc-ceeeecCCCCEe
Confidence            5555544321  111111122332 26788886432      2367788876654333321 11111 222233477888


Q ss_pred             EEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCCEEEEEecCceeeeEEEEeccccc
Q 040145          306 VVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLSTSE  371 (402)
Q Consensus       306 ~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~~~  371 (402)
                      +.... ...+.+||++.+....+....+    ....++++ .+|.|||.--..+.    ++.|++..
T Consensus       155 v~~~~-~~~i~~~d~~~~~~~~~~~~~~----~~p~gi~~d~~g~l~vsd~~~~~----i~~~~~~~  212 (260)
T d1rwia_         155 VTDTD-NNRVVKLEAESNNQVVLPFTDI----TAPWGIAVDEAGTVYVTEHNTNQ----VVKLLAGS  212 (260)
T ss_dssp             EEEGG-GTEEEEECTTTCCEEECCCSSC----CSEEEEEECTTCCEEEEETTTTE----EEEECTTC
T ss_pred             eeccc-cccccccccccceeeeeecccc----CCCccceeeeeeeeeeeecCCCE----EEEEeCCC
Confidence            87543 5689999998776555432122    33455555 46789887754433    66676543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.57  E-value=0.33  Score=40.82  Aligned_cols=173  Identities=11%  Similarity=-0.057  Sum_probs=91.7

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNW  234 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  234 (402)
                      +|+++++++.        .++++||..++...+++.  ..+.. .++. -+++.+++.|.+.    -..+.+||..++.-
T Consensus        14 dG~~~a~~~~--------g~v~v~d~~~~~~~~~~~--~~~v~-~~~~spDg~~l~~~~~~~----g~~v~v~d~~~~~~   78 (360)
T d1k32a3          14 DGDLIAFVSR--------GQAFIQDVSGTYVLKVPE--PLRIR-YVRRGGDTKVAFIHGTRE----GDFLGIYDYRTGKA   78 (360)
T ss_dssp             GGGCEEEEET--------TEEEEECTTSSBEEECSC--CSCEE-EEEECSSSEEEEEEEETT----EEEEEEEETTTCCE
T ss_pred             CCCEEEEEEC--------CeEEEEECCCCcEEEccC--CCCEE-EEEECCCCCEEEEEEcCC----CCEEEEEECCCCcE
Confidence            5666666542        278999998888777642  22222 2222 2666665554322    23588999999887


Q ss_pred             EEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEECCEEEEEeccC-
Q 040145          235 RTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELE-  311 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gg~~-  311 (402)
                      ..+......   .....+  +|+.+++++..      ..+..+|..+.+-..+..............-+|+.++++... 
T Consensus        79 ~~~~~~~~~---v~~~~~spdg~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~  149 (360)
T d1k32a3          79 EKFEENLGN---VFAMGVDRNGKFAVVANDR------FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK  149 (360)
T ss_dssp             EECCCCCCS---EEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred             EEeeCCCce---EEeeeecccccccceeccc------cccccccccccceeeeeecccccccchhhccceeeeeeecccc
Confidence            765432221   122222  66666666542      368889998877554433122222222233466666554321 


Q ss_pred             --------CcEEEEEeCCCCceeecCCCCCCccccCCeEEEEeCCEEEEEecC
Q 040145          312 --------RMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRN  356 (402)
Q Consensus       312 --------~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG~  356 (402)
                              ...+.+||..++.=..+.  ....  .........+|+.+++++.
T Consensus       150 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~--~~~~~~~spdg~~l~~~s~  198 (360)
T d1k32a3         150 HGETDGYVMQAIHVYDMEGRKIFAAT--TENS--HDYAPAFDADSKNLYYLSY  198 (360)
T ss_dssp             SSTTCSCCEEEEEEEETTTTEEEECS--CSSS--BEEEEEECTTSCEEEEEES
T ss_pred             ccceeeccccceeeeccccCceeeec--cccc--ccccccccCCCCEEEEEeC
Confidence                    346888999876533332  1110  1111233456665555553

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=94.55  E-value=1  Score=37.26  Aligned_cols=194  Identities=8%  Similarity=-0.046  Sum_probs=102.4

Q ss_pred             CCeEEEEEEeCCCCceeEEEeecCCCcEEeCCCCCCCCCCCCCCceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCC
Q 040145          104 DPWLFVFAFHKCTGKIQWQVLDLTHYCWHTIPAMPCKDKVCPHGFRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQK  183 (402)
Q Consensus       104 ~~~l~~~gg~~~~~~~~~~~~d~~~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t  183 (402)
                      ++.||+....    ..+++++|+... ...+...+       ......++..++.+|+.+....     .-..+..+...
T Consensus        38 dG~l~vt~~~----~~~I~~i~p~g~-~~~~~~~~-------~~~~gla~~~dG~l~v~~~~~~-----~~~~~~~~~~~  100 (302)
T d2p4oa1          38 DGTIFVTNHE----VGEIVSITPDGN-QQIHATVE-------GKVSGLAFTSNGDLVATGWNAD-----SIPVVSLVKSD  100 (302)
T ss_dssp             TSCEEEEETT----TTEEEEECTTCC-EEEEEECS-------SEEEEEEECTTSCEEEEEECTT-----SCEEEEEECTT
T ss_pred             CCCEEEEeCC----CCEEEEEeCCCC-EEEEEcCC-------CCcceEEEcCCCCeEEEecCCc-----eEEEEEecccc
Confidence            6778876532    335888998865 44444444       2234455556788988864311     11233344444


Q ss_pred             CceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEc---CCC-----CCCCcc-eeEEEEC
Q 040145          184 NRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDPVKGNWRTI---ASM-----GTNMAS-YDAAVLD  253 (402)
Q Consensus       184 ~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~-----~~~~~~-~~~~~~~  253 (402)
                      .+-+.+...+........+. -++.+|+.-..      ...++.+|+.+..-...   +..     ...... -.....+
T Consensus       101 ~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~  174 (302)
T d2p4oa1         101 GTVETLLTLPDAIFLNGITPLSDTQYLTADSY------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG  174 (302)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEETT------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred             cceeeccccCCccccceeEEccCCCEEeeccc------cccceeeeccCCcceeEecCCccceeeccCcccccccccccC
Confidence            45455444443333344444 36788876433      46788888887753221   111     111111 2233447


Q ss_pred             CEEEEEcccccCCccCCcEEEEeCCCCCeeeccc-cc-cCCCceeEEEECCEEEEEeccCCcEEEEEeCCCCceee
Q 040145          254 GKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV-GL-REGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWET  327 (402)
Q Consensus       254 g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~-~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~W~~  327 (402)
                      +.+|+....      ...++.||.....-..... .. ...-.+.++--+|.||+.... .+.|.+|++....-..
T Consensus       175 ~~l~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~-~~~V~~i~p~G~~~~~  243 (302)
T d2p4oa1         175 NFLYVSNTE------KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI-YNSVVRIAPDRSTTII  243 (302)
T ss_dssp             TEEEEEETT------TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT-TCCEEEECTTCCEEEE
T ss_pred             CceeeecCC------CCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC-CCcEEEECCCCCEEEE
Confidence            778886543      2478888876543221111 00 111122333457889887543 5679999998764333

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.75  Score=35.58  Aligned_cols=145  Identities=12%  Similarity=0.127  Sum_probs=79.5

Q ss_pred             ceEEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceee----c----CCCcccccceEEEE-ECCEEEEEcCCCCCC
Q 040145          148 FRCVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV----M----NKMITARSFFASGV-IGGMIYVAGGSSADL  218 (402)
Q Consensus       148 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~----~----~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~  218 (402)
                      +-+++. .+|.+|++-|.         .+|+++........    +    +.+|.. ...+... .++++|++-|.    
T Consensus         9 fDAv~~-~~G~~y~Fkg~---------~ywr~~~~~~~~~~~P~~I~~~w~glp~~-IDAAf~~~~~~k~yfFkg~----   73 (195)
T d1itva_           9 FDAIAE-IGNQLYLFKDG---------KYWRFSEGRGSRPQGPFLIADKWPALPRK-LDSVFEEPLSKKLFFFSGR----   73 (195)
T ss_dssp             CSEEEE-ETTEEEEEETT---------EEEEECCSSSCCCEEEEEHHHHCTTSCSS-CSEEEECTTTCCEEEEETT----
T ss_pred             cceEEE-eCCEEEEEECC---------EEEEEeCCCCCcCCCcEEeeeecCCCCCC-ccEEEEECCCCEEEEEecC----
Confidence            344443 48999999775         67777654333211    1    233321 1111111 25788888763    


Q ss_pred             CCCCeeEEEcCCCCcE-EEcCC--CCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCeee-----ccc-
Q 040145          219 FELDSAEVLDPVKGNW-RTIAS--MGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES-----MAV-  287 (402)
Q Consensus       219 ~~~~~~~~yd~~t~~W-~~~~~--~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~-----~~~-  287 (402)
                          .+++|+-.+-.. +.+.+  +|.......++..  +|++|++-|.        ..++||..+++-..     +.. 
T Consensus        74 ----~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG~--------~y~ryd~~~~~v~~gyPk~i~~~  141 (195)
T d1itva_          74 ----QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSASEVDRM  141 (195)
T ss_dssp             ----EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGCEEHHHH
T ss_pred             ----EEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEecc--------EEEEEeCCcccccCCCccchhhh
Confidence                467776432111 12322  3333233333433  6899999773        68999988764322     111 


Q ss_pred             --cccCCCceeEEEECCEEEEEeccCCcEEEEEeCCCC
Q 040145          288 --GLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTD  323 (402)
Q Consensus       288 --~~~~~~~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~  323 (402)
                        .+|.. ..++...++++|++-|.   ..++||..+.
T Consensus       142 w~gvp~~-idaAf~~~~~~Yffkg~---~y~r~~~~~~  175 (195)
T d1itva_         142 FPGVPLD-THDVFQFREKAYFCQDR---FYWRVSSRSE  175 (195)
T ss_dssp             STTSCSS-CSEEEEETTEEEEEETT---EEEEEECCTT
T ss_pred             cCCCCCC-CcEEEEeCCcEEEEECC---EEEEEcCCce
Confidence              12222 22344569999999665   6899997654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=94.47  E-value=1.1  Score=37.14  Aligned_cols=194  Identities=11%  Similarity=0.070  Sum_probs=98.7

Q ss_pred             EEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEE-ECCEEEEEcCCCCCCCCCCeeEEEcC
Q 040145          151 VSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGV-IGGMIYVAGGSSADLFELDSAEVLDP  229 (402)
Q Consensus       151 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~  229 (402)
                      .++..+|.||+....       ...++++||... .+.+...+.  ...+++. -++.+|+.+...+    .......+.
T Consensus        33 iAv~pdG~l~vt~~~-------~~~I~~i~p~g~-~~~~~~~~~--~~~gla~~~dG~l~v~~~~~~----~~~~~~~~~   98 (302)
T d2p4oa1          33 LASAPDGTIFVTNHE-------VGEIVSITPDGN-QQIHATVEG--KVSGLAFTSNGDLVATGWNAD----SIPVVSLVK   98 (302)
T ss_dssp             EEECTTSCEEEEETT-------TTEEEEECTTCC-EEEEEECSS--EEEEEEECTTSCEEEEEECTT----SCEEEEEEC
T ss_pred             EEECCCCCEEEEeCC-------CCEEEEEeCCCC-EEEEEcCCC--CcceEEEcCCCCeEEEecCCc----eEEEEEecc
Confidence            445458889987654       347999998865 333333221  1223333 2678888864321    122233344


Q ss_pred             CCCcEEEcCCCCCCCcceeEEE-ECCEEEEEcccccCCccCCcEEEEeCCCCCeee---cccccc----CCC--ceeEEE
Q 040145          230 VKGNWRTIASMGTNMASYDAAV-LDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWES---MAVGLR----EGW--TGSSVV  299 (402)
Q Consensus       230 ~t~~W~~~~~~~~~~~~~~~~~-~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~---~~~~~~----~~~--~~~~~~  299 (402)
                      .+.+-+.+...+........+. -+|.+|+....      ...++.+|+.++.-..   -.....    ...  ......
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~  172 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSY------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR  172 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETT------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE
T ss_pred             cccceeeccccCCccccceeEEccCCCEEeeccc------cccceeeeccCCcceeEecCCccceeeccCcccccccccc
Confidence            4455555544444433333333 37788876432      2367888887664221   111011    111  111234


Q ss_pred             ECCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEeccccc
Q 040145          300 VYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLSTSE  371 (402)
Q Consensus       300 ~~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~~~  371 (402)
                      .++.+|+... ....+++|+.....-....  .........-+++ -.+|.||+.....+.    |.+++|..
T Consensus       173 ~~~~l~~~~~-~~~~i~~~~~~~~~~~~~~--~~~~~~~~pdgia~d~dG~l~va~~~~~~----V~~i~p~G  238 (302)
T d2p4oa1         173 FGNFLYVSNT-EKMLLLRIPVDSTDKPGEP--EIFVEQTNIDDFAFDVEGNLYGATHIYNS----VVRIAPDR  238 (302)
T ss_dssp             ETTEEEEEET-TTTEEEEEEBCTTSCBCCC--EEEEESCCCSSEEEBTTCCEEEECBTTCC----EEEECTTC
T ss_pred             cCCceeeecC-CCCeEEecccccccccccc--ccccCCCCCcceEECCCCCEEEEEcCCCc----EEEECCCC
Confidence            5777777644 4678999988654311111  0000001112333 357789998754433    77777644

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.94  E-value=0.71  Score=37.40  Aligned_cols=151  Identities=10%  Similarity=0.003  Sum_probs=69.2

Q ss_pred             EEEEccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCccccc-ceEEEEE-CCEEEEEcCCCCCCCCCCeeEEE
Q 040145          150 CVSIPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARS-FFASGVI-GGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       150 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      ++++..++.+++.|+.+       ..+.+||..+++....  +..... -..+... ++.+++.++.      ...+..+
T Consensus        22 ~l~~sp~~~~l~s~s~D-------g~i~iWd~~~~~~~~~--~~~h~~~V~~~~~~~~~~~~~~~~~------~~~~~~~   86 (317)
T d1vyhc1          22 RVIFHPVFSVMVSASED-------ATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSA------DMTIKLW   86 (317)
T ss_dssp             EEEECSSSSEEEEEESS-------SCEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEET------TSCCCEE
T ss_pred             EEEEcCCCCEEEEEeCC-------CeEEEEECCCCCEEEE--EeCCCCcEEEEeeeccccccccccc------ccccccc
Confidence            33443466777777763       2688999988754321  111111 1122222 3444444443      2233455


Q ss_pred             cCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEE--ECCEEE
Q 040145          228 DPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVV--VYEHLF  305 (402)
Q Consensus       228 d~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~l~  305 (402)
                      +........................++..++.++.+      ..+..||..++.....-.....  ....+.  -++.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l  158 (317)
T d1vyhc1          87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLI  158 (317)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSEE
T ss_pred             cccccccccccccccccceeeeccCCCceEEeeccC------cceeEeecccceeeeEEccCCC--cceeeecccCCCEE
Confidence            555544433221111111111112245555555432      3677888887764332211111  111222  245666


Q ss_pred             EEeccCCcEEEEEeCCCCc
Q 040145          306 VVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       306 ~~gg~~~~~~~~yd~~~~~  324 (402)
                      +.|+. ...+..||..+..
T Consensus       159 ~~~~~-d~~v~~~~~~~~~  176 (317)
T d1vyhc1         159 ASCSN-DQTVRVWVVATKE  176 (317)
T ss_dssp             EEEET-TSCEEEEETTTCC
T ss_pred             EEEeC-CCeEEEEeeccce
Confidence            66554 3456677766544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.89  E-value=1.5  Score=36.50  Aligned_cols=106  Identities=10%  Similarity=0.052  Sum_probs=56.6

Q ss_pred             EEEEEcCCCCCCCCCCeeEEEcCCCCcEE-EcCCCCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEeCCCCCe
Q 040145          207 MIYVAGGSSADLFELDSAEVLDPVKGNWR-TIASMGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYDPSTDNW  282 (402)
Q Consensus       207 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W  282 (402)
                      .+++.+|.      ...+.+||..+..-. ..............+.+   .+.+++.|+.+      ..+..||..+++-
T Consensus       173 ~~~~~~~~------d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d------~~i~iwd~~~~~~  240 (325)
T d1pgua1         173 MRSMTVGD------DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD------RKISCFDGKSGEF  240 (325)
T ss_dssp             CEEEEEET------TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT------CCEEEEETTTCCE
T ss_pred             ceEEEeec------ccccccccccccccceecccccCCCCccEEeeeccccceeccccccc------cceeeeeeccccc
Confidence            44555665      345778887665432 22222222222223333   35677777653      3688999987764


Q ss_pred             e-eccccccCCC-ceeEE-EECCEEEEEeccCCcEEEEEeCCCCce
Q 040145          283 E-SMAVGLREGW-TGSSV-VVYEHLFVVSELERMKLKVYDPSTDSW  325 (402)
Q Consensus       283 ~-~~~~~~~~~~-~~~~~-~~~~~l~~~gg~~~~~~~~yd~~~~~W  325 (402)
                      . .+........ ...+. ..+++.++.|+. ...+.+||..+++-
T Consensus       241 ~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~-D~~i~iwd~~~~~~  285 (325)
T d1pgua1         241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGA-DATIRVWDVTTSKC  285 (325)
T ss_dssp             EEECCBTTBCCCSCEEEEEESSSSEEEEEET-TSEEEEEETTTTEE
T ss_pred             cccccccccccccceeeeeccCCCEEEEEeC-CCeEEEEECCCCCE
Confidence            3 3332111111 11122 246777777775 45799999988754

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=1.3  Score=34.21  Aligned_cols=143  Identities=13%  Similarity=0.069  Sum_probs=76.4

Q ss_pred             EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE--Ec----CCCCCCCcceeEEEE--CCEEEEEcccccCCccCCc
Q 040145          200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR--TI----ASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPR  271 (402)
Q Consensus       200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~--~~----~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~  271 (402)
                      +++.+++.+|++-|.        ..+.++.......  .+    +.+|...  -++...  ++++|++-|.        .
T Consensus        16 Av~~~~G~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~glp~~I--DAAf~~~~~~~~yfFkG~--------~   77 (195)
T d1su3a2          16 AITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPNGL--EAAYEFADRDEVRFFKGN--------K   77 (195)
T ss_dssp             EEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCSSC--CEEEEEGGGTEEEEEETT--------E
T ss_pred             EEEEcCCeEEEEeCC--------EEEEeeCCCCccCccchHhhCcCCCCcc--cceEEecCCcEEEEECCc--------E
Confidence            566789999999774        2333333332221  11    2333322  123323  6899999884        6


Q ss_pred             EEEEeCCCCCe---eeccc--cccCC--CceeEEEE--CCEEEEEeccCCcEEEEEeCCCCcee-----ecCC--CCCCc
Q 040145          272 GQVYDPSTDNW---ESMAV--GLREG--WTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWE-----TIEG--PPLPE  335 (402)
Q Consensus       272 ~~~yd~~~~~W---~~~~~--~~~~~--~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~-----~~~~--~~~p~  335 (402)
                      .++|+-.+...   ..+..  .++..  ...++...  ++++|+|-|.   ..++||..++.=.     .|..  ..+|.
T Consensus        78 y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~---~y~ry~~~~~~vd~gyPk~I~~~w~Gvp~  154 (195)
T d1su3a2          78 YWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN---KYWRYDEYKRSMDPGYPKMIAHDFPGIGH  154 (195)
T ss_dssp             EEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT---EEEEEETTTTEECSSCSEEHHHHSTTSCS
T ss_pred             EEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCC---EEEEEeccCccccCCcccccccccCCCCC
Confidence            78887543222   11211  11221  11222232  6899999775   7999998876311     1110  01332


Q ss_pred             cccCCeEEEEeCCEEEEEecCceeeeEEEEecccccc
Q 040145          336 QICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEK  372 (402)
Q Consensus       336 ~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~~~  372 (402)
                        ... ++...+|++|++-|.      ..+.||+...
T Consensus       155 --~iD-AAf~~~g~~YfFkg~------~y~r~~~~~~  182 (195)
T d1su3a2         155 --KVD-AVFMKDGFFYFFHGT------RQYKFDPKTK  182 (195)
T ss_dssp             --CCS-EEEEETTEEEEEETT------EEEEEETTTT
T ss_pred             --Ccc-EEEEECCeEEEEECC------EEEEEeCCcC
Confidence              223 445679999999994      4677775443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.33  E-value=0.61  Score=41.11  Aligned_cols=138  Identities=14%  Similarity=0.118  Sum_probs=74.3

Q ss_pred             CceEEEEECCCCceeecCCCcccccceEEEEE-CC-EEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEE
Q 040145          173 LDLVLKYEMQKNRWTVMNKMITARSFFASGVI-GG-MIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAA  250 (402)
Q Consensus       173 ~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~  250 (402)
                      .+.+.++|..|++-..  .++....-+.+++. ++ .+|+. +.      -..+.++|..+..-..+..++........+
T Consensus        41 ~g~v~v~D~~t~~v~~--~~~~g~~~~~v~fSpDG~~l~~~-s~------dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          41 AGQIALIDGSTYEIKT--VLDTGYAVHISRLSASGRYLFVI-GR------DGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             TTEEEEEETTTCCEEE--EEECSSCEEEEEECTTSCEEEEE-ET------TSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             CCEEEEEECCCCcEEE--EEeCCCCeeEEEECCCCCEEEEE-cC------CCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            4489999999986433  33334444555554 34 55554 33      346889998887644433333322222222


Q ss_pred             E-----ECCE-EEEEcccccCCccCCcEEEEeCCCCCeeeccc----------cccCCCceeE-EEECCEEEEEeccCCc
Q 040145          251 V-----LDGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWESMAV----------GLREGWTGSS-VVVYEHLFVVSELERM  313 (402)
Q Consensus       251 ~-----~~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~----------~~~~~~~~~~-~~~~~~l~~~gg~~~~  313 (402)
                      .     -+|+ ||+.+..      ...+.+||.++++-.....          ..+..+.... ...+|..+++......
T Consensus       112 ~s~~~SpDG~~l~vs~~~------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~  185 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  185 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             EecccCCCCCEEEEEcCC------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence            1     1565 5665543      2478899998876544321          0111222122 2224555545454567


Q ss_pred             EEEEEeCCCCce
Q 040145          314 KLKVYDPSTDSW  325 (402)
Q Consensus       314 ~~~~yd~~~~~W  325 (402)
                      .++.+|..+.+-
T Consensus       186 ~i~~~d~~~~~~  197 (432)
T d1qksa2         186 KILLVDYTDLNN  197 (432)
T ss_dssp             EEEEEETTCSSE
T ss_pred             eEEEEEccCCCc
Confidence            889998876543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=1.8  Score=34.26  Aligned_cols=70  Identities=10%  Similarity=0.071  Sum_probs=42.2

Q ss_pred             EccCCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCC
Q 040145          153 IPREGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVIGGMIYVAGGSSADLFELDSAEVLDPVKG  232 (402)
Q Consensus       153 ~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~  232 (402)
                      +..++..++.|+.++       .+.+||..+++-...  +......-.....++++++.|+.      -..+.+++..++
T Consensus        21 ~~~d~~~l~sgs~Dg-------~i~vWd~~~~~~~~~--l~~H~~~V~~v~~~~~~l~s~s~------D~~i~~~~~~~~   85 (293)
T d1p22a2          21 LQYDDQKIVSGLRDN-------TIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSS------DSTVRVWDVNTG   85 (293)
T ss_dssp             EECCSSEEEEEESSS-------CEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEET------TSCEEEEESSSC
T ss_pred             EEEcCCEEEEEeCCC-------eEEEEECCCCcEEEE--EecCCCCEeeeecccceeecccc------cccccccccccc
Confidence            334778888887632       688999988754321  11111122233457777777775      345778888877


Q ss_pred             cEEEc
Q 040145          233 NWRTI  237 (402)
Q Consensus       233 ~W~~~  237 (402)
                      .....
T Consensus        86 ~~~~~   90 (293)
T d1p22a2          86 EMLNT   90 (293)
T ss_dssp             CEEEE
T ss_pred             ccccc
Confidence            65543

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=1.7  Score=33.44  Aligned_cols=139  Identities=17%  Similarity=0.198  Sum_probs=74.2

Q ss_pred             EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE-E---Ec----CCCCCCCcceeEEE-E--CCEEEEEcccccCCcc
Q 040145          200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNW-R---TI----ASMGTNMASYDAAV-L--DGKLLVTEGWLWPFFV  268 (402)
Q Consensus       200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~---~~----~~~~~~~~~~~~~~-~--~g~ly~~gG~~~~~~~  268 (402)
                      +++.++|.+|++-|.        ..+.|+...... .   .+    +.+|.   ...++. .  ++++|++-|.      
T Consensus        11 Av~~~~G~~y~Fkg~--------~ywr~~~~~~~~~~~P~~I~~~w~glp~---~IDAAf~~~~~~k~yfFkg~------   73 (195)
T d1itva_          11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPR---KLDSVFEEPLSKKLFFFSGR------   73 (195)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCS---SCSEEEECTTTCCEEEEETT------
T ss_pred             eEEEeCCEEEEEECC--------EEEEEeCCCCCcCCCcEEeeeecCCCCC---CccEEEEECCCCEEEEEecC------
Confidence            456788999999763        355565433221 1   12    33443   233333 2  6789999763      


Q ss_pred             CCcEEEEeCCCCCe-eeccc-cccCC--CceeE-EEECCEEEEEeccCCcEEEEEeCCCCcee-----ecCC--CCCCcc
Q 040145          269 SPRGQVYDPSTDNW-ESMAV-GLREG--WTGSS-VVVYEHLFVVSELERMKLKVYDPSTDSWE-----TIEG--PPLPEQ  336 (402)
Q Consensus       269 ~~~~~~yd~~~~~W-~~~~~-~~~~~--~~~~~-~~~~~~l~~~gg~~~~~~~~yd~~~~~W~-----~~~~--~~~p~~  336 (402)
                        ..++|+-.+-.. ..+.. .++..  ...++ ..-+|++|++-|.   ..++||..++.=.     .|..  ..+|. 
T Consensus        74 --~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG~---~y~ryd~~~~~v~~gyPk~i~~~w~gvp~-  147 (195)
T d1itva_          74 --QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR---RLWRFDVKAQMVDPRSASEVDRMFPGVPL-  147 (195)
T ss_dssp             --EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT---EEEEEETTTTEECGGGCEEHHHHSTTSCS-
T ss_pred             --EEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEecc---EEEEEeCCcccccCCCccchhhhcCCCCC-
Confidence              577786432111 11221 11211  11222 2237899999665   7999999876311     1110  01332 


Q ss_pred             ccCCeEEEEeCCEEEEEecCceeeeEEEEeccc
Q 040145          337 ICKPFAVNACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       337 ~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                        .-.++...++++|++-|.      ..+.|++
T Consensus       148 --~idaAf~~~~~~Yffkg~------~y~r~~~  172 (195)
T d1itva_         148 --DTHDVFQFREKAYFCQDR------FYWRVSS  172 (195)
T ss_dssp             --SCSEEEEETTEEEEEETT------EEEEEEC
T ss_pred             --CCcEEEEeCCcEEEEECC------EEEEEcC
Confidence              223555678999999884      3556654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.23  E-value=2.4  Score=34.52  Aligned_cols=102  Identities=14%  Similarity=0.153  Sum_probs=50.3

Q ss_pred             CCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCC
Q 040145          253 DGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEG  330 (402)
Q Consensus       253 ~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~  330 (402)
                      ++.+++.|+.+      ..+..||..+.+-...-... .... .++.+  ++.+++.|+. ...+..||...........
T Consensus       195 ~~~~~~~~~~d------~~v~i~d~~~~~~~~~~~~h-~~~i-~~v~~~p~~~~l~s~s~-d~~i~~~~~~~~~~~~~~~  265 (340)
T d1tbga_         195 DTRLFVSGACD------ASAKLWDVREGMCRQTFTGH-ESDI-NAICFFPNGNAFATGSD-DATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             TSSEEEEEETT------TEEEEEETTTTEEEEEECCC-SSCE-EEEEECTTSSEEEEEET-TSCEEEEETTTTEEEEEEC
T ss_pred             ccceeEEeecC------ceEEEEECCCCcEEEEEeCC-CCCe-EEEEECCCCCEEEEEeC-CCeEEEEeecccccccccc
Confidence            44555555542      36788888765422111101 1111 11222  5677777665 4578889988765443321


Q ss_pred             CCCCccccCCeEEE-EeCCEEEEEecCceeeeEEEEeccc
Q 040145          331 PPLPEQICKPFAVN-ACDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       331 ~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                        ..........+. ..++++++.|+.++.    |..+|.
T Consensus       266 --~~~~~~~i~~~~~s~~~~~l~~g~~dg~----i~iwd~  299 (340)
T d1tbga_         266 --HDNIICGITSVSFSKSGRLLLAGYDDFN----CNVWDA  299 (340)
T ss_dssp             --CTTCCSCEEEEEECSSSCEEEEEETTSC----EEEEET
T ss_pred             --cccccCceEEEEECCCCCEEEEEECCCE----EEEEEC
Confidence              111111112222 346777888876544    444543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.89  E-value=1.1  Score=41.07  Aligned_cols=113  Identities=17%  Similarity=0.285  Sum_probs=70.5

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCcc--------cccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMIT--------ARSFFASGVIGGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~--------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ++.||+....        ..++.+|..|++  |+.-+..+.        .......+..+++||+...       ...++
T Consensus        66 ~g~vyv~t~~--------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~g~l~  130 (560)
T d1kv9a2          66 DGVIYTSMSW--------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGRLI  130 (560)
T ss_dssp             TTEEEEEEGG--------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSEEE
T ss_pred             CCEEEEECCC--------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC-------CCEEE
Confidence            9999987643        379999999995  886443221        1122355667888888754       35688


Q ss_pred             EEcCCCCc--EEEcC-CCCCCC-cceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eee
Q 040145          226 VLDPVKGN--WRTIA-SMGTNM-ASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WES  284 (402)
Q Consensus       226 ~yd~~t~~--W~~~~-~~~~~~-~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~  284 (402)
                      .+|..|++  |+... ...... ......+.++.+++-+.... ....-.+..||..|++  |+.
T Consensus       131 Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~-~~~~G~v~a~D~~TG~~~W~~  194 (560)
T d1kv9a2         131 ALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAE-YGVRGFVSAYDADTGKLAWRF  194 (560)
T ss_dssp             EEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEE
T ss_pred             EEECCCCcEEeccCccCcccceeeeeeeeeecCccccccccee-ccccceEEEEECCCceEEeee
Confidence            89998875  76542 222222 22345567888876433221 1122368999999874  764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.71  E-value=0.88  Score=41.67  Aligned_cols=115  Identities=20%  Similarity=0.262  Sum_probs=71.9

Q ss_pred             eEEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCc--EEEcCCCCCC--------CcceeEEEECCEEEEEcccccCCcc
Q 040145          199 FASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGN--WRTIASMGTN--------MASYDAAVLDGKLLVTEGWLWPFFV  268 (402)
Q Consensus       199 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~--------~~~~~~~~~~g~ly~~gG~~~~~~~  268 (402)
                      .+-++.+++||+...       ...++.+|.+|++  |+.-+..+..        ......+..+++||+....      
T Consensus        60 stPiv~~g~vyv~t~-------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------  126 (560)
T d1kv9a2          60 ATPLFHDGVIYTSMS-------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD------  126 (560)
T ss_dssp             CCCEEETTEEEEEEG-------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT------
T ss_pred             eCCEEECCEEEEECC-------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCC------
Confidence            445788999999865       4678999999885  9864333221        1123455668888886542      


Q ss_pred             CCcEEEEeCCCCC--eeeccccccCC--CceeEEEECCEEEEEeccC----CcEEEEEeCCCCc--eee
Q 040145          269 SPRGQVYDPSTDN--WESMAVGLREG--WTGSSVVVYEHLFVVSELE----RMKLKVYDPSTDS--WET  327 (402)
Q Consensus       269 ~~~~~~yd~~~~~--W~~~~~~~~~~--~~~~~~~~~~~l~~~gg~~----~~~~~~yd~~~~~--W~~  327 (402)
                       ..++++|..+++  |+.-.......  .....++.++.+++-+...    ...+..||.+|.+  |+.
T Consensus       127 -g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  194 (560)
T d1kv9a2         127 -GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (560)
T ss_dssp             -SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             -CEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeee
Confidence             268999988874  76543212222  1222367888877643221    2468899998874  764

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.50  E-value=2.2  Score=32.60  Aligned_cols=140  Identities=15%  Similarity=0.073  Sum_probs=75.4

Q ss_pred             EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcEE--Ec----CCCCCCCcceeEEE-E--CCEEEEEcccccCCccCC
Q 040145          200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNWR--TI----ASMGTNMASYDAAV-L--DGKLLVTEGWLWPFFVSP  270 (402)
Q Consensus       200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~--~~----~~~~~~~~~~~~~~-~--~g~ly~~gG~~~~~~~~~  270 (402)
                      +++.+++.+|++-|.        .++.++.....+.  .+    +.+|..   ..++. .  ++++|++-|.        
T Consensus        13 Av~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~~lp~~---IDAAf~~~~~~~~yffkg~--------   73 (192)
T d1pexa_          13 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPNR---IDAAYEHPSHDLIFIFRGR--------   73 (192)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCSS---CCEEEEETTTTEEEEEETT--------
T ss_pred             EEEEcCCeEEEEECC--------EEEEEcCCCCCCcccchhhhCcCCCCc---ccceEEEcCCCEEEEEcCC--------
Confidence            566789999999763        2344443332222  11    234432   23333 2  6889988774        


Q ss_pred             cEEEEeCCCCCee---eccc-cccCC--CceeEEE--ECCEEEEEeccCCcEEEEEeCCCCcee-----ecCC--CCCCc
Q 040145          271 RGQVYDPSTDNWE---SMAV-GLREG--WTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWE-----TIEG--PPLPE  335 (402)
Q Consensus       271 ~~~~yd~~~~~W~---~~~~-~~~~~--~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~-----~~~~--~~~p~  335 (402)
                      ..++|+-.+....   .+.. ..+..  ...++..  .++++|++-|.   ..++||..++.=.     .+..  ..+|.
T Consensus        74 ~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~---~y~~y~~~~~~~~~~~pk~I~~~w~gvp~  150 (192)
T d1pexa_          74 KFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN---QVWRYDDTNHIMDKDYPRLIEEDFPGIGD  150 (192)
T ss_dssp             EEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT---EEEEEETTTTEECSSCCCBHHHHSTTSCS
T ss_pred             EEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCC---EEEEEcCccccccCCCcEEHhhcCCCCCC
Confidence            6788876543332   2222 11111  1122222  26899999665   7899998765311     1110  01332


Q ss_pred             cccCCeEEEEeCCEEEEEecCceeeeEEEEecccc
Q 040145          336 QICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTS  370 (402)
Q Consensus       336 ~~~~~~~~~~~~~~i~v~GG~~~~~~~~v~~~~~~  370 (402)
                        ... ++...+|++|++-|.      ..+.||..
T Consensus       151 --~vd-Aa~~~~g~~YfF~g~------~y~r~~~~  176 (192)
T d1pexa_         151 --KVD-AVYEKNGYIYFFNGP------IQFEYSIW  176 (192)
T ss_dssp             --CCS-EEEEETTEEEEEETT------EEEEEETT
T ss_pred             --Cce-EEEEeCCEEEEEECC------EEEEEeCC
Confidence              222 444679999999883      46666643

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.94  E-value=2.6  Score=32.42  Aligned_cols=100  Identities=11%  Similarity=0.089  Sum_probs=55.8

Q ss_pred             CCEEEEEcCCCCCCCCCCeeEEEcCCCCcE---EEcCC--CCCCCcceeEEEE---CCEEEEEcccccCCccCCcEEEEe
Q 040145          205 GGMIYVAGGSSADLFELDSAEVLDPVKGNW---RTIAS--MGTNMASYDAAVL---DGKLLVTEGWLWPFFVSPRGQVYD  276 (402)
Q Consensus       205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W---~~~~~--~~~~~~~~~~~~~---~g~ly~~gG~~~~~~~~~~~~~yd  276 (402)
                      ++++|++-|.        ..++|+..+...   +.+..  +|.......++..   ++++|++-|.        ..+.||
T Consensus        69 ~~~~yffkg~--------~~~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg~--------~y~ryd  132 (200)
T d1gena_          69 EEKAVFFAGN--------EYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD--------KFWRYN  132 (200)
T ss_dssp             TTEEEEEETT--------EEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT--------EEEEEE
T ss_pred             CCeEEEecCc--------eEEEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeCc--------EEEEec
Confidence            6688888763        467776432111   12221  2322223334443   6899999873        689999


Q ss_pred             CCCCCeee-----ccc---cccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCc
Q 040145          277 PSTDNWES-----MAV---GLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       277 ~~~~~W~~-----~~~---~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      ..+++-..     +..   .+|.. ..++...  ++++|++-|.   ..+.||..+.+
T Consensus       133 ~~~~~vd~~yPk~I~~~w~gvp~~-idAAf~~~~~g~~Yff~g~---~y~r~d~~~~~  186 (200)
T d1gena_         133 EVKKKMDPGFPKLIADAWNAIPDN-LDAVVDLQGGGHSYFFKGA---YYLKLENQSLK  186 (200)
T ss_dssp             TTTTEECSSCCEEHHHHSSSCCSS-CSEEEECTTTCEEEEEETT---EEEEEETTEEE
T ss_pred             cccceeccCcceehhhccCCCCCC-ccEEEEecCCCEEEEEECC---EEEEEECCceE
Confidence            87764221     111   12222 2223232  6899999765   68999876543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.84  E-value=0.96  Score=37.22  Aligned_cols=102  Identities=15%  Similarity=0.064  Sum_probs=53.1

Q ss_pred             CeeEEEcCCCCcEEEcCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCCeeeccccccCCCceeEEEEC
Q 040145          222 DSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVY  301 (402)
Q Consensus       222 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~  301 (402)
                      ..+.++|..++........+............+..++.++.       +.+.+||+.+++....-. .+....+.+..-+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~d  290 (337)
T d1pbyb_         219 TGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-------NVLESFDLEKNASIKRVP-LPHSYYSVNVSTD  290 (337)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-------SEEEEEETTTTEEEEEEE-CSSCCCEEEECTT
T ss_pred             ccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc-------ccEEEEECCCCcEEEEEc-CCCCEEEEEECCC
Confidence            35778888887766543333333333333332222222221       368899999877544322 2222222222235


Q ss_pred             CEEEEEeccCCcEEEEEeCCCCceeecCCCCCC
Q 040145          302 EHLFVVSELERMKLKVYDPSTDSWETIEGPPLP  334 (402)
Q Consensus       302 ~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p  334 (402)
                      |+.+.+|+. .+.+.+||.++.  +.++.+++|
T Consensus       291 G~~l~v~~~-~~~i~v~D~~t~--~~v~~i~~~  320 (337)
T d1pbyb_         291 GSTVWLGGA-LGDLAAYDAETL--EKKGQVDLP  320 (337)
T ss_dssp             SCEEEEESB-SSEEEEEETTTC--CEEEEEECG
T ss_pred             CCEEEEEeC-CCcEEEEECCCC--cEEEEEECC
Confidence            655455665 457999999875  444433343

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.17  E-value=3  Score=38.06  Aligned_cols=115  Identities=19%  Similarity=0.270  Sum_probs=69.5

Q ss_pred             EEEEECCEEEEEcCCCCCCCCCCeeEEEcCC-CC--cEEEcCCCCCCCc--------ceeEEEECCEEEEEcccccCCcc
Q 040145          200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPV-KG--NWRTIASMGTNMA--------SYDAAVLDGKLLVTEGWLWPFFV  268 (402)
Q Consensus       200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~-t~--~W~~~~~~~~~~~--------~~~~~~~~g~ly~~gG~~~~~~~  268 (402)
                      +-.+.++.+|+..+.      ...++.+|.. |+  .|+.-+..+....        .-..+..+++||+....      
T Consensus        57 tP~v~~g~vyv~t~~------~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~------  124 (571)
T d2ad6a1          57 APLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN------  124 (571)
T ss_dssp             CCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT------
T ss_pred             CCEEECCEEEEecCC------CCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeCC------
Confidence            445789999998753      2457888864 44  4875433222111        11346678999875431      


Q ss_pred             CCcEEEEeCCCCC--eee-ccccccC-CCceeEEEECCEEEEEeccC----CcEEEEEeCCCC--ceee
Q 040145          269 SPRGQVYDPSTDN--WES-MAVGLRE-GWTGSSVVVYEHLFVVSELE----RMKLKVYDPSTD--SWET  327 (402)
Q Consensus       269 ~~~~~~yd~~~~~--W~~-~~~~~~~-~~~~~~~~~~~~l~~~gg~~----~~~~~~yd~~~~--~W~~  327 (402)
                       ..+++.|.++++  |+. +...... ......++.++++|+-....    ...+..||..|.  .|+.
T Consensus       125 -g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         125 -GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             -SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             -CcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence             268999999875  764 3321222 22223378899988754321    347999999876  4763

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.15  E-value=2  Score=39.30  Aligned_cols=113  Identities=18%  Similarity=0.260  Sum_probs=70.2

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCcc--------cccceEEEEECCEEEEEcCCCCCCCCCCeeE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMIT--------ARSFFASGVIGGMIYVAGGSSADLFELDSAE  225 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~--------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  225 (402)
                      ++.||+....        +.++.+|..|++  |+.-+..+.        .....+.+..++++|+...       ...++
T Consensus        77 ~g~vyv~t~~--------~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-------~g~l~  141 (573)
T d1kb0a2          77 DGIMYVSASW--------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLI  141 (573)
T ss_dssp             TTEEEEECGG--------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEE
T ss_pred             CCEEEEECCC--------CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-------cccee
Confidence            9999987543        379999999995  876443221        1122355677888887643       34688


Q ss_pred             EEcCCCCc--EEEc-CCCCCCC--cceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eee
Q 040145          226 VLDPVKGN--WRTI-ASMGTNM--ASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WES  284 (402)
Q Consensus       226 ~yd~~t~~--W~~~-~~~~~~~--~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~  284 (402)
                      .+|..|++  |+.- .+.....  .....+++++.+|+ |+..........+..||..|++  |+.
T Consensus       142 alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~viv-g~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVII-GNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             EEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEE-CCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             eeccccccceecccCccCCcceEEeecceEEEeccEEE-eeccccccccceEEEEecCCccceeee
Confidence            89998876  8653 2222221  12334667888876 3322222223468999999875  764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=90.06  E-value=3.1  Score=33.94  Aligned_cols=155  Identities=11%  Similarity=0.022  Sum_probs=78.1

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCceeecCCCcccccceEEEEE-C-CEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNKMITARSFFASGVI-G-GMIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      +++.+++++.       .+.+.+||..|++-...-.++.......++.. + ..+|+.+..      ...+.+||..+..
T Consensus         7 ~~~~l~~~~~-------~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~------~~~v~~~d~~t~~   73 (346)
T d1jmxb_           7 GHEYMIVTNY-------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDTCK   73 (346)
T ss_dssp             TCEEEEEEET-------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTTTE
T ss_pred             CCcEEEEEcC-------CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECC------CCcEEEEeCccCe
Confidence            6777887775       34899999999964432234434444455554 3 367777754      4578999999875


Q ss_pred             EEEcCCCCCCC-----cceeEEEE-CC-EEEEEcccccC-----CccCCcEEEEeCCCCCeee-ccc-cccCCCceeEEE
Q 040145          234 WRTIASMGTNM-----ASYDAAVL-DG-KLLVTEGWLWP-----FFVSPRGQVYDPSTDNWES-MAV-GLREGWTGSSVV  299 (402)
Q Consensus       234 W~~~~~~~~~~-----~~~~~~~~-~g-~ly~~gG~~~~-----~~~~~~~~~yd~~~~~W~~-~~~-~~~~~~~~~~~~  299 (402)
                      =..........     .-...+.. +| .+|+.+.....     ......+..||..+++-.. +.. ..+.........
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (346)
T d1jmxb_          74 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA  153 (346)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred             eeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEec
Confidence            33211111111     11122222 44 46665432110     0112346677777654322 221 111111212223


Q ss_pred             ECCEEEEEeccCCcEEEEEeCCCCceee
Q 040145          300 VYEHLFVVSELERMKLKVYDPSTDSWET  327 (402)
Q Consensus       300 ~~~~l~~~gg~~~~~~~~yd~~~~~W~~  327 (402)
                      -++++|+.++    .+..+|..+.+...
T Consensus       154 ~~~~~~~~~~----~~~~~~~~~~~~~~  177 (346)
T d1jmxb_         154 DDGSLYVAGP----DIYKMDVKTGKYTV  177 (346)
T ss_dssp             TTSCEEEESS----SEEEECTTTCCEEE
T ss_pred             CCCEEEEeCC----cceEEEccCCCEEE
Confidence            4566776543    46667776655443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=89.81  E-value=4.2  Score=36.99  Aligned_cols=122  Identities=16%  Similarity=0.187  Sum_probs=70.4

Q ss_pred             EEEECCEEEEEcccccCCccCCcEEEEeCCCC--Ceeeccc-----cccC---CCceeEEEECCEEEEEeccCCcEEEEE
Q 040145          249 AAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTD--NWESMAV-----GLRE---GWTGSSVVVYEHLFVVSELERMKLKVY  318 (402)
Q Consensus       249 ~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~--~W~~~~~-----~~~~---~~~~~~~~~~~~l~~~gg~~~~~~~~y  318 (402)
                      -++.+|+||+....       ..++++|.+++  .|+.-..     ....   ......+..++++|+...  ...++.+
T Consensus        73 Piv~~g~vyv~t~~-------~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~--~g~l~al  143 (573)
T d1kb0a2          73 PVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--DGRLIAL  143 (573)
T ss_dssp             CEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT--TSEEEEE
T ss_pred             CEEECCEEEEECCC-------CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec--ccceeee
Confidence            35679999997653       36899999887  4875321     0000   111123567888887533  4478899


Q ss_pred             eCCCCc--eeecCCCCCCccccCCeEEEEeCCEEEEEec-CceeeeEEEEecccccccCceeeeEEEE
Q 040145          319 DPSTDS--WETIEGPPLPEQICKPFAVNACDCRVYVVGR-NLHVAVGHITRLSTSEKKWSFSVQWQVV  383 (402)
Q Consensus       319 d~~~~~--W~~~~~~~~p~~~~~~~~~~~~~~~i~v~GG-~~~~~~~~v~~~~~~~~~~~~~~~W~~~  383 (402)
                      |.++.+  |+.-...............++++++|+|-+. ......+.|..||...    ....|+.-
T Consensus       144 da~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~T----G~~~W~~~  207 (573)
T d1kb0a2         144 DAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAET----GERKWRWF  207 (573)
T ss_dssp             ETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT----CCEEEEEE
T ss_pred             ccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCC----ccceeeee
Confidence            988764  7654311111111222345667888877432 2233456788888543    34577763

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.48  E-value=4.1  Score=32.36  Aligned_cols=54  Identities=9%  Similarity=-0.063  Sum_probs=28.1

Q ss_pred             CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEE-EeCCEEEEEecCcee
Q 040145          301 YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVN-ACDCRVYVVGRNLHV  359 (402)
Q Consensus       301 ~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~i~v~GG~~~~  359 (402)
                      .+.+++.|+. ...+..||..+.+....-  ....  ..-.+++ ..++++++.|+.++.
T Consensus       216 ~~~~~~~~~~-d~~i~~~~~~~~~~~~~~--~~~~--~~v~~~~~~~~~~~l~s~~~dg~  270 (317)
T d1vyhc1         216 PGPFLLSGSR-DKTIKMWDVSTGMCLMTL--VGHD--NWVRGVLFHSGGKFILSCADDKT  270 (317)
T ss_dssp             -CCEEEEEET-TSEEEEEETTTTEEEEEE--ECCS--SCEEEEEECSSSSCEEEEETTTE
T ss_pred             CCceeEeccC-CCEEEEEECCCCcEEEEE--eCCC--CCEEEEEECCCCCEEEEEECCCe
Confidence            4555555554 457889999877543211  1110  1112223 346777777776543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.17  E-value=5.5  Score=32.16  Aligned_cols=136  Identities=15%  Similarity=0.075  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCCCCCCCCCeeEEEcCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcccccCCccCCcEEEEeCCCCCe
Q 040145          205 GGMIYVAGGSSADLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVL--DGKLLVTEGWLWPFFVSPRGQVYDPSTDNW  282 (402)
Q Consensus       205 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~g~ly~~gG~~~~~~~~~~~~~yd~~~~~W  282 (402)
                      .+.+++.|+.      ...+.+||..+..-...  +........++.+  ++.+++.|+.+      ..+..||......
T Consensus       195 ~~~~~~~~~~------d~~v~i~d~~~~~~~~~--~~~h~~~i~~v~~~p~~~~l~s~s~d------~~i~~~~~~~~~~  260 (340)
T d1tbga_         195 DTRLFVSGAC------DASAKLWDVREGMCRQT--FTGHESDINAICFFPNGNAFATGSDD------ATCRLFDLRADQE  260 (340)
T ss_dssp             TSSEEEEEET------TTEEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEE
T ss_pred             ccceeEEeec------CceEEEEECCCCcEEEE--EeCCCCCeEEEEECCCCCEEEEEeCC------CeEEEEeeccccc
Confidence            3455666654      35678888877653221  1111122222222  66777777643      2578888876554


Q ss_pred             eeccccccCCCceeEEEE--CCEEEEEeccCCcEEEEEeCCCCceeecCCCCCCccccCCeEEEE-eCCEEEEEecCcee
Q 040145          283 ESMAVGLREGWTGSSVVV--YEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNA-CDCRVYVVGRNLHV  359 (402)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~--~~~l~~~gg~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~~i~v~GG~~~~  359 (402)
                      ...-........-..+.+  ++.+++.|+. ...+.+||..+.+  .+..  +......-.+++. .++.+++.||.++.
T Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~--~~~~--~~~H~~~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         261 LMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKAD--RAGV--LAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECSSSCEEEEEET-TSCEEEEETTTCC--EEEE--ECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEEC-CCEEEEEECCCCc--EEEE--EcCCCCCEEEEEEeCCCCEEEEEccCCE
Confidence            322211111111112222  5667777665 4579999987654  3321  2111011123333 46677777776544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.60  E-value=3.3  Score=37.72  Aligned_cols=114  Identities=13%  Similarity=0.172  Sum_probs=69.4

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEEC-CCCc--eeecCCCcccc--------cceEEEEECCEEEEEcCCCCCCCCCCee
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEM-QKNR--WTVMNKMITAR--------SFFASGVIGGMIYVAGGSSADLFELDSA  224 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~-~t~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~  224 (402)
                      ++.||+..+.       .+.++.+|. .|++  |+.-+..+...        ..-+++..+++||+...       ...+
T Consensus        62 ~g~vyv~t~~-------~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~-------~g~l  127 (571)
T d2ad6a1          62 GDMMYVHSAF-------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NGHL  127 (571)
T ss_dssp             TTEEEEECST-------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEE
T ss_pred             CCEEEEecCC-------CCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeC-------CCcE
Confidence            9999998653       236888987 4664  87654332211        11245677889887643       3568


Q ss_pred             EEEcCCCCc--EEE-cCCCCC-CCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC--eee
Q 040145          225 EVLDPVKGN--WRT-IASMGT-NMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN--WES  284 (402)
Q Consensus       225 ~~yd~~t~~--W~~-~~~~~~-~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~--W~~  284 (402)
                      +..|.+|++  |+. +.+... ......-+++++++|+-.... .......+.+||..|++  |+.
T Consensus       128 ~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~-~~~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         128 LALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGA-ELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             EEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCG-GGTCCCEEEEEETTTCCEEEEE
T ss_pred             EeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccc-cccccCcEEEEECCCCcEEEEE
Confidence            899999986  764 322111 112233467799998754422 12223468999999874  864

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.15  E-value=5.6  Score=30.20  Aligned_cols=97  Identities=15%  Similarity=0.149  Sum_probs=56.8

Q ss_pred             cCCEEEEEeCccCCCCCCCceEEEEECCCCce---eec----CCCcccccceEEEE------ECCEEEEEcCCCCCCCCC
Q 040145          155 REGTLFVCGGMVSDVDCPLDLVLKYEMQKNRW---TVM----NKMITARSFFASGV------IGGMIYVAGGSSADLFEL  221 (402)
Q Consensus       155 ~~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~W---~~~----~~~~~~r~~~~~~~------~~~~iyv~GG~~~~~~~~  221 (402)
                      .++++|++-|.         .+++|+..+-..   +.+    +.+|.  .--++..      -++++|++-|        
T Consensus        58 ~~~~~yfFkG~---------~yw~y~~~~~~~gyPk~i~~~~~glp~--~iDAA~~~~~~~~~~~~~yfFkg--------  118 (192)
T d1qhua1          58 GHTSVYLIKGD---------KVWVYTSEKNEKVYPKSLQDEFPGIPF--PLDAAVECHRGECQDEGILFFQG--------  118 (192)
T ss_dssp             TTTEEEEEETT---------EEEEECC-------CEEHHHHSTTCCS--SCCEEEEECBBTBSSSEEEEEET--------
T ss_pred             CCCcEEEEeCC---------EEEEEeCCccccCCCcChHHhCCCCCC--CceEEEEccccccCCCeEEEEeC--------
Confidence            36799999875         688887544322   111    12221  1112222      2689999976        


Q ss_pred             CeeEEEcCCCCcEEE--cCCCCCCCcceeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC
Q 040145          222 DSAEVLDPVKGNWRT--IASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN  281 (402)
Q Consensus       222 ~~~~~yd~~t~~W~~--~~~~~~~~~~~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~  281 (402)
                      ...+.||..++.=..  -+.+|   ...+++..+|.+|++-|.        ..++||..+.+
T Consensus       119 ~~yw~yd~~~~~~~~~~w~gip---~~daA~~~~g~~YfFkg~--------~y~r~~~~~~~  169 (192)
T d1qhua1         119 NRKWFWDLTTGTKKERSWPAVG---NCTSALRWLGRYYCFQGN--------QFLRFNPVSGE  169 (192)
T ss_dssp             TEEEEEETTTTEEEEECCTTSC---CCSEEEEETTEEEEEETT--------EEEEECTTTCC
T ss_pred             CeEEEEeCCCCCcccccccCcC---CcceeEEeCCcEEEEECC--------EEEEEcCCcce
Confidence            357889988764111  12222   223555679999999874        67899987765

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.11  E-value=5.8  Score=30.33  Aligned_cols=141  Identities=12%  Similarity=0.105  Sum_probs=71.4

Q ss_pred             EEEEECCEEEEEcCCCCCCCCCCeeEEEcCCCCcE---EEc----CCCCCCCcceeEEE--ECCEEEEEcccccCCccCC
Q 040145          200 ASGVIGGMIYVAGGSSADLFELDSAEVLDPVKGNW---RTI----ASMGTNMASYDAAV--LDGKLLVTEGWLWPFFVSP  270 (402)
Q Consensus       200 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W---~~~----~~~~~~~~~~~~~~--~~g~ly~~gG~~~~~~~~~  270 (402)
                      +++.+++.+|++-|.        ..+.++......   ..+    +.+|...  -++..  .++++|++-|.        
T Consensus        17 Av~~~~G~~y~Fkg~--------~~wr~~~~~~~~~~P~~I~~~w~glp~~I--dAA~~~~~~~~~yffkg~--------   78 (200)
T d1gena_          17 GIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPEKI--DAVYEAPQEEKAVFFAGN--------   78 (200)
T ss_dssp             EEEEETTEEEEEETT--------EEEEESSTTSCCEEEEEGGGTCTTSCSCC--SEEEEETTTTEEEEEETT--------
T ss_pred             EEEecCCeEEEEeCC--------EEEEEcCCCCCCCCcEehhhccCCCCCCc--eEEEEECCCCeEEEecCc--------
Confidence            566779999999763        233333222221   122    2233221  12222  27789998774        


Q ss_pred             cEEEEeCCCCCe---eeccc-cccCC--CceeEEE--ECCEEEEEeccCCcEEEEEeCCCCcee-----ecCC--CCCCc
Q 040145          271 RGQVYDPSTDNW---ESMAV-GLREG--WTGSSVV--VYEHLFVVSELERMKLKVYDPSTDSWE-----TIEG--PPLPE  335 (402)
Q Consensus       271 ~~~~yd~~~~~W---~~~~~-~~~~~--~~~~~~~--~~~~l~~~gg~~~~~~~~yd~~~~~W~-----~~~~--~~~p~  335 (402)
                      ..++|+-.+...   ..+.. .++..  ...++..  -++++|+|-|.   ..++||..++.=.     .|..  ..+|.
T Consensus        79 ~~~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg~---~y~ryd~~~~~vd~~yPk~I~~~w~gvp~  155 (200)
T d1gena_          79 EYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD---KFWRYNEVKKKMDPGFPKLIADAWNAIPD  155 (200)
T ss_dssp             EEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT---EEEEEETTTTEECSSCCEEHHHHSSSCCS
T ss_pred             eEEEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeCc---EEEEeccccceeccCcceehhhccCCCCC
Confidence            578887433221   11111 11111  1122222  36899999775   7999999876411     1110  02332


Q ss_pred             cccCCeEEEE-eCCEEEEEecCceeeeEEEEeccc
Q 040145          336 QICKPFAVNA-CDCRVYVVGRNLHVAVGHITRLST  369 (402)
Q Consensus       336 ~~~~~~~~~~-~~~~i~v~GG~~~~~~~~v~~~~~  369 (402)
                        ...+++.. .++++|++-|.      ..+.||.
T Consensus       156 --~idAAf~~~~~g~~Yff~g~------~y~r~d~  182 (200)
T d1gena_         156 --NLDAVVDLQGGGHSYFFKGA------YYLKLEN  182 (200)
T ss_dssp             --SCSEEEECTTTCEEEEEETT------EEEEEET
T ss_pred             --CccEEEEecCCCEEEEEECC------EEEEEEC
Confidence              22333332 36899999883      3555654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.97  E-value=11  Score=32.46  Aligned_cols=114  Identities=14%  Similarity=0.087  Sum_probs=62.8

Q ss_pred             ECCEEEEEcccccCCccCCcEEEEeCCC---CCeeeccccccCCCceeEE-EECCEEEEEeccC-CcEEEEEeCCCCcee
Q 040145          252 LDGKLLVTEGWLWPFFVSPRGQVYDPST---DNWESMAVGLREGWTGSSV-VVYEHLFVVSELE-RMKLKVYDPSTDSWE  326 (402)
Q Consensus       252 ~~g~ly~~gG~~~~~~~~~~~~~yd~~~---~~W~~~~~~~~~~~~~~~~-~~~~~l~~~gg~~-~~~~~~yd~~~~~W~  326 (402)
                      .++.+|+.-....+.   -.+...++..   ..|+.+-++.........+ ..++.|++.--.+ ...+.+++..++.|.
T Consensus       296 ~~~~~~~~Tn~~a~~---~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~  372 (430)
T d1qfma1         296 EGTVFTFKTNRHSPN---YRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL  372 (430)
T ss_dssp             ETTEEEEEECTTCTT---CEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             CCceeecccCccccc---ceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEE
Confidence            467788876544332   2577777654   4688764322222222233 3467776553222 457999999999999


Q ss_pred             ecCCCCCCccccCCeEEE--EeCCEEEEE-ecCceeeeEEEEecccccccC
Q 040145          327 TIEGPPLPEQICKPFAVN--ACDCRVYVV-GRNLHVAVGHITRLSTSEKKW  374 (402)
Q Consensus       327 ~~~~~~~p~~~~~~~~~~--~~~~~i~v~-GG~~~~~~~~v~~~~~~~~~~  374 (402)
                      .+.  +.+..  ...+..  ..++.+++. .+..  .-..++.||..++.-
T Consensus       373 ~~~--~~~~~--sv~~~~~~~~~~~~~~~~ss~~--tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         373 KIF--PLEVG--SVVGYSGQKKDTEIFYQFTSFL--SPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEE--CCCSS--EEEEEECCTTCSEEEEEEECSS--CCCEEEEEETTSSSC
T ss_pred             Eec--CCCCc--eEeeccCCCCCCEEEEEEcCCC--CCCeEEEEECCCCCc
Confidence            886  33321  111111  123455543 3322  246799998766643

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.86  E-value=10  Score=34.30  Aligned_cols=114  Identities=22%  Similarity=0.380  Sum_probs=64.6

Q ss_pred             CCEEEEEeCccCCCCCCCceEEEEECCCCc--eeecCCCcc---cc---cceEEEEECCEEEEEcCCCCCCCCCCeeEEE
Q 040145          156 EGTLFVCGGMVSDVDCPLDLVLKYEMQKNR--WTVMNKMIT---AR---SFFASGVIGGMIYVAGGSSADLFELDSAEVL  227 (402)
Q Consensus       156 ~~~i~v~GG~~~~~~~~~~~~~~~d~~t~~--W~~~~~~~~---~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y  227 (402)
                      ++.||+....        ..++.+|+.|++  |+.-+..+.   +.   ..-+.+..+++||+...       ...+..+
T Consensus        68 ~g~vy~~t~~--------~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~-------~~~l~al  132 (582)
T d1flga_          68 DGVIYVTASY--------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DASVVAL  132 (582)
T ss_dssp             TTEEEEEETT--------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTEEEEE
T ss_pred             CCEEEEeCCC--------CeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecC-------CCeEEEe
Confidence            9999998643        379999999995  876443321   11   12245667888887532       3568899


Q ss_pred             cCCCCc--EEEc-CCCCCC--CcceeEEEEC---CEEEEEcccc-cCCccCCcEEEEeCCCCC--eee
Q 040145          228 DPVKGN--WRTI-ASMGTN--MASYDAAVLD---GKLLVTEGWL-WPFFVSPRGQVYDPSTDN--WES  284 (402)
Q Consensus       228 d~~t~~--W~~~-~~~~~~--~~~~~~~~~~---g~ly~~gG~~-~~~~~~~~~~~yd~~~~~--W~~  284 (402)
                      |.+|++  |+.- .+....  ....-.+..+   +.+.++.|.. ........+..||..+++  |+.
T Consensus       133 da~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~  200 (582)
T d1flga_         133 NKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             ESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             cccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEE
Confidence            999884  8653 222111  1112222222   2333443332 222223468899998874  653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=81.71  E-value=8.1  Score=31.10  Aligned_cols=106  Identities=13%  Similarity=-0.023  Sum_probs=51.5

Q ss_pred             EEEEEcCCCCCCCCCCeeEEEcCCCC-cEEEcCCCCCCCcceeEEEE-CCE-EEEEcccccCCccCCcEEEEeCCCCCee
Q 040145          207 MIYVAGGSSADLFELDSAEVLDPVKG-NWRTIASMGTNMASYDAAVL-DGK-LLVTEGWLWPFFVSPRGQVYDPSTDNWE  283 (402)
Q Consensus       207 ~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~~~~~~~~~~-~g~-ly~~gG~~~~~~~~~~~~~yd~~~~~W~  283 (402)
                      .+||.+..      ...+.+||..+. ..+.+.....+..-...+.. +|+ ||+.+..+      ..+.+|++..+.+.
T Consensus         5 ~v~v~~~~------~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d------~~i~~~~i~~~~~~   72 (333)
T d1ri6a_           5 TVYIASPE------SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE------FRVLAYRIAPDDGA   72 (333)
T ss_dssp             EEEEEEGG------GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTT------TEEEEEEECTTTCC
T ss_pred             EEEEECCC------CCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCC------CeEEEEEEeCCCCc
Confidence            46777754      566778876543 33333222222221223332 665 56554321      36778887766554


Q ss_pred             ecc-ccccCCC--ceeEEEECCEEEEEeccCCcEEEEEeCCCCc
Q 040145          284 SMA-VGLREGW--TGSSVVVYEHLFVVSELERMKLKVYDPSTDS  324 (402)
Q Consensus       284 ~~~-~~~~~~~--~~~~~~~~~~l~~~gg~~~~~~~~yd~~~~~  324 (402)
                      ... .......  .+....-+|+.+++++.....+..|+.....
T Consensus        73 ~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~  116 (333)
T d1ri6a_          73 LTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL  116 (333)
T ss_dssp             EEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred             EEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccccc
Confidence            321 1111111  1122233566555555556677777766543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.14  E-value=13  Score=30.07  Aligned_cols=105  Identities=16%  Similarity=0.120  Sum_probs=56.3

Q ss_pred             EEEEEeCccCCCCCCCceEEEEECCCCceee-cCCCccccc-ceEEEEE--CCEEEEEcCCCCCCCCCCeeEEEcCCCCc
Q 040145          158 TLFVCGGMVSDVDCPLDLVLKYEMQKNRWTV-MNKMITARS-FFASGVI--GGMIYVAGGSSADLFELDSAEVLDPVKGN  233 (402)
Q Consensus       158 ~i~v~GG~~~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  233 (402)
                      .+++.+|.+       ..+.+||..+.+-.. ......... -.+++..  .+.+++.|+.      -..+.+||..+++
T Consensus       173 ~~~~~~~~d-------~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~------d~~i~iwd~~~~~  239 (325)
T d1pgua1         173 MRSMTVGDD-------GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS------DRKISCFDGKSGE  239 (325)
T ss_dssp             CEEEEEETT-------TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET------TCCEEEEETTTCC
T ss_pred             ceEEEeecc-------cccccccccccccceecccccCCCCccEEeeeccccceecccccc------ccceeeeeecccc
Confidence            455666652       267788876654222 222211111 2233333  3567777775      3458899998876


Q ss_pred             EE-EcCCCCCCCcc--eeEEEECCEEEEEcccccCCccCCcEEEEeCCCCC
Q 040145          234 WR-TIASMGTNMAS--YDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDN  281 (402)
Q Consensus       234 W~-~~~~~~~~~~~--~~~~~~~g~ly~~gG~~~~~~~~~~~~~yd~~~~~  281 (402)
                      -. .+.....+...  ++....+|+.++.|+.+      ..+.+||+.+++
T Consensus       240 ~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D------~~i~iwd~~~~~  284 (325)
T d1pgua1         240 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD------ATIRVWDVTTSK  284 (325)
T ss_dssp             EEEECCBTTBCCCSCEEEEEESSSSEEEEEETT------SEEEEEETTTTE
T ss_pred             ccccccccccccccceeeeeccCCCEEEEEeCC------CeEEEEECCCCC
Confidence            43 33322222221  22222467777777753      368899998875