Citrus Sinensis ID: 040147

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
MLTIKRVPTVVSNYQDQEETASENSEAGCGSNCLGNCSLPVSKLPLYQITKDKVDLTEEASGEEPRMSFLHDLLLGQWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGRHLKKRATEFRIDQVLQSFDENKFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATINHLHFQAYYLPLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGKSLRDLSHAVASSCICLQNNNIPFNVLISDCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVLEAVGLQKPILEENGIIQEEDSLDKLPALEAQR
cccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEcccEEEEEEEcccccccccccHHHHHHccccccccccccccccccccEEEEccccccEEEEEccccccccEEEEEcccccccccEEcHHHHHHHHHHHHHccccccEEEEccccccccccHHHHHHHccccccccccccccccccccccccccEEEEEcccccEEEEEEEEcccHHHHHHHHHHHHHHHcccccccEEEEEEcccEEEEEccccccccccccccccccccccccHHHHHccccccccHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHccccccccccccccccccccc
ccEEEEccEEEEccccccccccccccccccccccccccccccccccHEEcccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccEEEcccccEEEEEEcccccccccccccccccEcccccccccccccccccEEEEEEcccccccEEEEEccccccccEEEEcccHccccccccHHHHHHHHHHHHHHccccEEEEEccccccEcHcHcEEEEEEcccccccccccccccccccccccccEEEEEEccccccEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEEEEEccccccccccHHHHHccccHHHHHHccccccccHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHccccccccccccccccHHHcc
mltikrvptvvsnyqdqeetasenseagcgsnclgncslpvsklplyqitkdkvdlteeasgeeprmsFLHDLLLGQWEDrmnrglfrydvtscetkiipgeygFIAQLNEGRHLKKRATEFRIDQVLQSFDENKFNFTKIGQEEMLfrlddskspsvvainvspieyghvlliprvldclpqridHESFLLALYVAKeaadpffrlgynslgafatinHLHFqayylplpfpvekaptsrivtvkghqDTQVIISQLLNYPVRGLVFEVGKSLRDLSHAVASSCIclqnnnipfnvlisdcgrriilfpQCYAEKQALGEVSQELLdtqvnpaawEISGHIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVLEAVGlqkpileengiiqeedsldklpaleaqr
mltikrvptvvsnyqdqeeTASENSEAGCGSNCLGNCSLPVSKLPLYQITKDKVDLTeeasgeeprmSFLHDLLLGQWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGRHLKKRATEFRIDQvlqsfdenkfNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATINHLHFQAYYLPLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGKSLRDLSHAVASSCICLQNNNIPFNVLISDCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVLEAVGLQKPIleengiiqeedsldklpaleaqr
MLTIKRVPTVVSNYQDQEETASENSEAGCGSNCLGNCSLPVSKLPLYQITKDKVDLTEEASGEEPRMSFLHDLLLGQWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGRHLKKRATEFRIDQVLQSFDENKFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATINHLHFQAYYLPLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGKSLRDLSHAVASSCICLQNNNIPFNVLISDCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVLEAVGLQKPILEENGIIQEEDSLDKLPALEAQR
****************************CGSNCLGNCSLPVSKLPLYQITKDKV************MSFLHDLLLGQWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGRHLKKRATEFRIDQVLQSFDENKFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATINHLHFQAYYLPLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGKSLRDLSHAVASSCICLQNNNIPFNVLISDCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVLEAVGLQKPILEENGII****************
*LTIKRVPTVVSNYQ*************CGSNCLGNCSLPVSKLPLYQITKDKVDL**********MSFLHDLLLGQWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGRH***************SFDENKFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATINHLHFQAYYLPLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGKSLRDLSHAVASSCICLQNNNIPFNVLISDCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVLEAV*****************************
MLTIKRVPTVVSNY**************CGSNCLGNCSLPVSKLPLYQITKDKVDLTEEASGEEPRMSFLHDLLLGQWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGRHLKKRATEFRIDQVLQSFDENKFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATINHLHFQAYYLPLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGKSLRDLSHAVASSCICLQNNNIPFNVLISDCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVLEAVGLQKPILEENGIIQEEDSLDKLPALEAQR
MLTIKRVPTVVSNYQDQEETA*****AGCGSNCLGNCSLPVSKLPLYQITKDK*********EEPRMSFLHDLLLGQWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGRHLKKRATEFRIDQVLQSFDENKFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATINHLHFQAYYLPLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGKSLRDLSHAVASSCICLQNNNIPFNVLISDCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVLEAVGLQ**************************
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MLTIKRVPTVVSNYQDQEETASENSEAGCGSNCLGNCSLPVSKLPLYQITKDKVDLTEEASGEEPRMSFLHDLLLGQWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGRHLKKRATEFRIDQVLQSFDENKFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATINHLHFQAYYLPLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGKSLRDLSHAVASSCICLQNNNIPFNVLISDCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVLEAVGLQKPILEENGIIQEEDSLDKLPALEAQR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query412 2.2.26 [Sep-21-2011]
Q8RWE8442 GDP-L-galactose phosphory yes no 0.910 0.848 0.651 1e-153
Q9FLP9431 GDP-L-galactose phosphory no no 0.907 0.867 0.638 1e-149
Q08CA1343 GDP-D-glucose phosphoryla yes no 0.742 0.892 0.321 9e-45
Q3TLS3386 GDP-D-glucose phosphoryla yes no 0.723 0.772 0.327 6e-40
Q5E9T1385 GDP-D-glucose phosphoryla yes no 0.735 0.787 0.314 8e-39
Q6ZNW5385 GDP-D-glucose phosphoryla yes no 0.706 0.755 0.329 1e-37
Q8HXE4385 GDP-D-glucose phosphoryla N/A no 0.706 0.755 0.326 4e-37
Q0V9F1399 GDP-D-glucose phosphoryla yes no 0.694 0.716 0.278 1e-34
A8E5Y3399 GDP-D-glucose phosphoryla N/A no 0.718 0.741 0.282 3e-34
Q5ZR76482 GDP-D-glucose phosphoryla yes no 0.740 0.632 0.248 1e-16
>sp|Q8RWE8|GGAP1_ARATH GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2 PE=1 SV=1 Back     alignment and function desciption
 Score =  542 bits (1397), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/405 (65%), Positives = 318/405 (78%), Gaps = 30/405 (7%)

Query: 1   MLTIKRVPTVVSNYQDQEETASENSEAGCGSNCLGNCSLPVSKLPLYQI-----TKDKVD 55
           ML IKRVPTVVSNYQ  +         GCG NCLG C L  ++LPLY       + +K+ 
Sbjct: 1   MLKIKRVPTVVSNYQKDD---GAEDPVGCGRNCLGACCLNGARLPLYACKNLVKSGEKLV 57

Query: 56  LTEEASGEEPRMSFLHDLLLGQWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGRHL 115
           ++ EA   EP ++FL  L+LG+WEDR  RGLFRYDVT+CETK+IPG+YGF+AQLNEGRHL
Sbjct: 58  ISHEAI--EPPVAFLESLVLGEWEDRFQRGLFRYDVTACETKVIPGKYGFVAQLNEGRHL 115

Query: 116 KKRATEFRIDQVLQSFDENKFNFTKIGQEEMLFR----------------LDDSKSPSVV 159
           KKR TEFR+D+VLQSFD +KFNFTK+GQEE+LF+                +D   SPSVV
Sbjct: 116 KKRPTEFRVDKVLQSFDGSKFNFTKVGQEELLFQFEAGEDAQVQFFPCMPIDPENSPSVV 175

Query: 160 AINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATIN 219
           AINVSPIEYGHVLLIPRVLDCLPQRIDH+S LLA+++A EAA+P+FRLGYNSLGAFATIN
Sbjct: 176 AINVSPIEYGHVLLIPRVLDCLPQRIDHKSLLLAVHMAAEAANPYFRLGYNSLGAFATIN 235

Query: 220 HLHFQAYYLPLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGKSLRDLSH 279
           HLHFQAYYL +PFP+EKAPT +I T      + V IS+LL+YPVR L+FE G S+++LS 
Sbjct: 236 HLHFQAYYLAMPFPLEKAPTKKITTTV----SGVKISELLSYPVRSLLFEGGSSMQELSD 291

Query: 280 AVASSCICLQNNNIPFNVLISDCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEIS 339
            V+  C+CLQNNNIPFN+LISDCGR+I L PQCYAEKQALGEVS E+L+TQVNPA WEIS
Sbjct: 292 TVSDCCVCLQNNNIPFNILISDCGRQIFLMPQCYAEKQALGEVSPEVLETQVNPAVWEIS 351

Query: 340 GHIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVLEAVG 384
           GH+VLKR++D+E ASE+ AWR+L+E SLSEERF+EV A   EA+G
Sbjct: 352 GHMVLKRKEDYEGASEDNAWRLLAEASLSEERFKEVTALAFEAIG 396
Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Acts as a phosphorylase rather than as a transferase. Uses preferentially GDP-L-galactose and GDP-D-glucose as substrates. Lower activity with GDP-L-fucose, very low activity with GDP-D-mannose, and no activity with UDP-D-glucose, UDP-D-galactose or ADP-D-glucose. Highly specific for inorganic phosphate as the guanylyl acceptor.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6EC: 9
>sp|Q9FLP9|GGAP2_ARATH GDP-L-galactose phosphorylase 2 OS=Arabidopsis thaliana GN=VTC5 PE=1 SV=1 Back     alignment and function description
>sp|Q08CA1|GDPP1_DANRE GDP-D-glucose phosphorylase 1 OS=Danio rerio GN=gdpgp1 PE=2 SV=1 Back     alignment and function description
>sp|Q3TLS3|GDPP1_MOUSE GDP-D-glucose phosphorylase 1 OS=Mus musculus GN=Gdpgp1 PE=2 SV=2 Back     alignment and function description
>sp|Q5E9T1|GDPP1_BOVIN GDP-D-glucose phosphorylase 1 OS=Bos taurus GN=GDPGP1 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZNW5|GDPP1_HUMAN GDP-D-glucose phosphorylase 1 OS=Homo sapiens GN=GDPGP1 PE=1 SV=2 Back     alignment and function description
>sp|Q8HXE4|GDPP1_MACFA GDP-D-glucose phosphorylase 1 OS=Macaca fascicularis GN=GDPGP1 PE=2 SV=1 Back     alignment and function description
>sp|Q0V9F1|GDPP1_XENTR GDP-D-glucose phosphorylase 1 OS=Xenopus tropicalis GN=gdpgp1 PE=2 SV=1 Back     alignment and function description
>sp|A8E5Y3|GDPP1_XENLA GDP-D-glucose phosphorylase 1 OS=Xenopus laevis GN=gdpgp1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZR76|GDPP1_CAEEL GDP-D-glucose phosphorylase 1 OS=Caenorhabditis elegans GN=gdpgp1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
224069370441 predicted protein [Populus trichocarpa] 0.985 0.920 0.706 1e-174
296087154433 unnamed protein product [Vitis vinifera] 0.980 0.933 0.709 1e-168
359488117481 PREDICTED: LOW QUALITY PROTEIN: GDP-L-ga 0.978 0.837 0.711 1e-168
255583397453 conserved hypothetical protein [Ricinus 0.970 0.883 0.670 1e-163
189345250443 VTC2-like protein [Nicotiana tabacum] 0.975 0.907 0.670 1e-160
218186550438 hypothetical protein OsI_37726 [Oryza sa 0.922 0.867 0.698 1e-160
115487702438 Os12g0190000 [Oryza sativa Japonica Grou 0.922 0.867 0.698 1e-160
359806406436 uncharacterized protein LOC100806541 [Gl 0.922 0.871 0.683 1e-158
356501552439 PREDICTED: GDP-L-galactose phosphorylase 0.922 0.865 0.684 1e-158
357160579437 PREDICTED: GDP-L-galactose phosphorylase 0.941 0.887 0.674 1e-158
>gi|224069370|ref|XP_002302967.1| predicted protein [Populus trichocarpa] gi|222844693|gb|EEE82240.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 305/432 (70%), Positives = 350/432 (81%), Gaps = 26/432 (6%)

Query: 1   MLTIKRVPTVVSNYQDQEETASENSEAGCGSNCLGNCSLPVSKLPLYQITKDKVDL---- 56
           +LTIK+VPTVVSNYQ++    SE    GCG NCLG C LPVSKLPLY   +D  +L    
Sbjct: 2   VLTIKKVPTVVSNYQEEN---SEKGFEGCGRNCLGKCCLPVSKLPLYAFKEDNSNLIGNS 58

Query: 57  TEEASGEEPRMSFLHDLLLGQWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGRHLK 116
            E++S E+P M FLH+LLLGQWEDRM+RGLFRYDVT+C+TKIIPG YGFIAQLN+GRHLK
Sbjct: 59  VEKSSEEQPHMCFLHNLLLGQWEDRMSRGLFRYDVTACDTKIIPGRYGFIAQLNKGRHLK 118

Query: 117 KRATEFRIDQVLQSFDENKFNFTKIGQEEMLFRLD------------------DSKSPSV 158
           KR TEFR+D+VLQ FDE KFNFTK+GQEE+LFR +                  DS S SV
Sbjct: 119 KRPTEFRVDKVLQDFDETKFNFTKVGQEEVLFRFEKSIDHNRHFFPSAPPITADSNSSSV 178

Query: 159 VAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATI 218
           VAINVSPIEYGHVLLIP+VL+CLPQRIDH SFLLAL++AKEAADPFFR+GYNSLGAFATI
Sbjct: 179 VAINVSPIEYGHVLLIPQVLNCLPQRIDHGSFLLALHMAKEAADPFFRVGYNSLGAFATI 238

Query: 219 NHLHFQAYYLPLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGKSLRDLS 278
           NHLHFQAYYL  PFPVEKAPT RI+T+K  QD  VI+SQLLNYPVRGLVFE G +++DLS
Sbjct: 239 NHLHFQAYYLAAPFPVEKAPTRRIMTMKSPQDEGVIVSQLLNYPVRGLVFEGGNTVQDLS 298

Query: 279 HAVASSCICLQNNNIPFNVLISDCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEI 338
            +VASSCI LQNNNIPFNVLI+DCGRRI LFPQCYAEKQA GE SQELLDTQVNPA WEI
Sbjct: 299 DSVASSCIFLQNNNIPFNVLITDCGRRIFLFPQCYAEKQARGEASQELLDTQVNPAVWEI 358

Query: 339 SGHIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVLEAVGLQKPILEENGIIQE 398
           SGHIVLKR++DF++ASE YAWR+L+EVSLS +RF +VKAY+LEA G Q  I EEN    E
Sbjct: 359 SGHIVLKRQEDFDDASETYAWRLLAEVSLSNKRFHQVKAYLLEAAGFQTEI-EENNRDLE 417

Query: 399 EDSLDKLPALEA 410
            + + + P+ EA
Sbjct: 418 REPIYEQPSPEA 429

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296087154|emb|CBI33528.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488117|ref|XP_003633703.1| PREDICTED: LOW QUALITY PROTEIN: GDP-L-galactose phosphorylase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255583397|ref|XP_002532458.1| conserved hypothetical protein [Ricinus communis] gi|223527816|gb|EEF29914.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|189345250|gb|ACD92981.1| VTC2-like protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|218186550|gb|EEC68977.1| hypothetical protein OsI_37726 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115487702|ref|NP_001066338.1| Os12g0190000 [Oryza sativa Japonica Group] gi|77553232|gb|ABA96028.1| VTC2, putative, expressed [Oryza sativa Japonica Group] gi|113648845|dbj|BAF29357.1| Os12g0190000 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|359806406|ref|NP_001240984.1| uncharacterized protein LOC100806541 [Glycine max] gi|346229115|gb|AEO21431.1| GDP-L-galactose phosphorylase [Glycine max] Back     alignment and taxonomy information
>gi|356501552|ref|XP_003519588.1| PREDICTED: GDP-L-galactose phosphorylase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357160579|ref|XP_003578810.1| PREDICTED: GDP-L-galactose phosphorylase 2-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
TAIR|locus:2116342442 VTC2 "vitamin c defective 2" [ 0.949 0.884 0.639 3.1e-138
TAIR|locus:2161620431 VTC5 "VITAMIN C DEFECTIVE 5" [ 0.951 0.909 0.625 1.6e-134
ZFIN|ZDB-GENE-060929-280343 zgc:153343 "zgc:153343" [Danio 0.740 0.889 0.322 5.2e-42
MGI|MGI:2443429386 Gdpgp1 "GDP-D-glucose phosphor 0.742 0.792 0.333 8e-37
RGD|1560277385 Gdpgp1 "GDP-D-glucose phosphor 0.742 0.794 0.334 8e-37
UNIPROTKB|F1SJX4384 GDPGP1 "Uncharacterized protei 0.742 0.796 0.324 5.7e-36
UNIPROTKB|Q5E9T1385 GDPGP1 "GDP-D-glucose phosphor 0.745 0.797 0.317 4e-35
UNIPROTKB|Q8HXE4385 GDPGP1 "GDP-D-glucose phosphor 0.718 0.768 0.336 6.5e-35
UNIPROTKB|Q6ZNW5385 GDPGP1 "GDP-D-glucose phosphor 0.699 0.748 0.332 8.3e-35
UNIPROTKB|J9NW04408 GDPGP1 "Uncharacterized protei 0.716 0.723 0.325 5.8e-34
TAIR|locus:2116342 VTC2 "vitamin c defective 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1353 (481.3 bits), Expect = 3.1e-138, P = 3.1e-138
 Identities = 271/424 (63%), Positives = 332/424 (78%)

Query:     1 MLTIKRVPTVVSNYQDQEETASENSEAGCGSNCLGNCSLPVSKLPLY---QITK--DKVD 55
             ML IKRVPTVVSNYQ  ++  +E+   GCG NCLG C L  ++LPLY    + K  +K+ 
Sbjct:     1 MLKIKRVPTVVSNYQ--KDDGAEDP-VGCGRNCLGACCLNGARLPLYACKNLVKSGEKLV 57

Query:    56 LTEEASGEEPRMSFLHDLLLGQWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGRHL 115
             ++ EA   EP ++FL  L+LG+WEDR  RGLFRYDVT+CETK+IPG+YGF+AQLNEGRHL
Sbjct:    58 ISHEAI--EPPVAFLESLVLGEWEDRFQRGLFRYDVTACETKVIPGKYGFVAQLNEGRHL 115

Query:   116 KKRATEFRIDQVLQSFDENKFNFTKIGQEEMLFR----------------LDDSKSPSVV 159
             KKR TEFR+D+VLQSFD +KFNFTK+GQEE+LF+                +D   SPSVV
Sbjct:   116 KKRPTEFRVDKVLQSFDGSKFNFTKVGQEELLFQFEAGEDAQVQFFPCMPIDPENSPSVV 175

Query:   160 AINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATIN 219
             AINVSPIEYGHVLLIPRVLDCLPQRIDH+S LLA+++A EAA+P+FRLGYNSLGAFATIN
Sbjct:   176 AINVSPIEYGHVLLIPRVLDCLPQRIDHKSLLLAVHMAAEAANPYFRLGYNSLGAFATIN 235

Query:   220 HLHFQAYYLPLPFPVEKAPTSRIVT-VKGHQDTQVIISQLLNYPVRGLVFEVGKSLRDLS 278
             HLHFQAYYL +PFP+EKAPT +I T V G     V IS+LL+YPVR L+FE G S+++LS
Sbjct:   236 HLHFQAYYLAMPFPLEKAPTKKITTTVSG-----VKISELLSYPVRSLLFEGGSSMQELS 290

Query:   279 HAVASSCICLQNNNIPFNVLISDCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEI 338
               V+  C+CLQNNNIPFN+LISDCGR+I L PQCYAEKQALGEVS E+L+TQVNPA WEI
Sbjct:   291 DTVSDCCVCLQNNNIPFNILISDCGRQIFLMPQCYAEKQALGEVSPEVLETQVNPAVWEI 350

Query:   339 SGHIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVLEAVGLQKPILEENG-IIQ 397
             SGH+VLKR++D+E ASE+ AWR+L+E SLSEERF+EV A   EA+G      +  G I+ 
Sbjct:   351 SGHMVLKRKEDYEGASEDNAWRLLAEASLSEERFKEVTALAFEAIGCSNQEEDLEGTIVH 410

Query:   398 EEDS 401
             +++S
Sbjct:   411 QQNS 414
GO:0005634 "nucleus" evidence=ISM
GO:0019853 "L-ascorbic acid biosynthetic process" evidence=IMP
GO:0009408 "response to heat" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
GO:0008928 "mannose-1-phosphate guanylyltransferase (GDP) activity" evidence=IDA
GO:0010474 "glucose-1-phosphate guanylyltransferase (GDP) activity" evidence=IDA
GO:0010475 "galactose-1-phosphate guanylyltransferase (GDP) activity" evidence=IDA
GO:0010471 "GDP-galactose:mannose-1-phosphate guanylyltransferase activity" evidence=IDA
GO:0010472 "GDP-galactose:glucose-1-phosphate guanylyltransferase activity" evidence=IDA
GO:0010473 "GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity" evidence=IDA
GO:0080046 "quercetin 4'-O-glucosyltransferase activity" evidence=IDA
GO:0080048 "GDP-D-glucose phosphorylase activity" evidence=IDA
GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP
TAIR|locus:2161620 VTC5 "VITAMIN C DEFECTIVE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-280 zgc:153343 "zgc:153343" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2443429 Gdpgp1 "GDP-D-glucose phosphorylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1560277 Gdpgp1 "GDP-D-glucose phosphorylase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJX4 GDPGP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9T1 GDPGP1 "GDP-D-glucose phosphorylase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXE4 GDPGP1 "GDP-D-glucose phosphorylase 1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZNW5 GDPGP1 "GDP-D-glucose phosphorylase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NW04 GDPGP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWE8GGAP1_ARATH2, ., 7, ., 7, ., 6, 90.65180.91010.8484yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00002305
hypothetical protein (441 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
PLN03103403 PLN03103, PLN03103, GDP-L-galactose-hexose-1-phosp 0.0
cd01277103 cd01277, HINT_subgroup, HINT (histidine triad nucl 8e-04
>gnl|CDD|215577 PLN03103, PLN03103, GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information 
 Score =  682 bits (1761), Expect = 0.0
 Identities = 277/404 (68%), Positives = 318/404 (78%), Gaps = 28/404 (6%)

Query: 1   MLTIKRVPTVVSNYQDQEETASENSEAGCGSNCLGNCSLPVSKLPLYQITKDKVDLTE-- 58
           MLTIKRVPTVVSNYQD      ++   GCG NCLG C LP +KLPLY   K   D +   
Sbjct: 1   MLTIKRVPTVVSNYQD------DDELGGCGRNCLGKCCLPGAKLPLYAFKKVSKDDSGKL 54

Query: 59  --EASGEEPRMSFLHDLLLGQWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGRHLK 116
              +S  EP +SFL  LLL QWEDRM RGLFRYDVT+CETK+IPG+YGFIAQLNEGRHLK
Sbjct: 55  GSFSSKPEPSVSFLDSLLLAQWEDRMARGLFRYDVTACETKVIPGKYGFIAQLNEGRHLK 114

Query: 117 KRATEFRIDQVLQSFDENKFNFTKIGQEEMLFR----------------LDDSKSPSVVA 160
           KR TEFR+D+VLQ FD  KFNFTK+GQEE+LF+                +D S SP+VVA
Sbjct: 115 KRPTEFRVDKVLQPFDGKKFNFTKVGQEEVLFQFEQGEDDIPEFFPSAPIDASNSPNVVA 174

Query: 161 INVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATINH 220
           INVSPIEYGHVLL+PRVLDCLPQRID +SFLLALY+A EA +P+FR+GYNSLGAFATINH
Sbjct: 175 INVSPIEYGHVLLVPRVLDCLPQRIDPDSFLLALYMAAEANNPYFRVGYNSLGAFATINH 234

Query: 221 LHFQAYYLPLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGKSLRDLSHA 280
           LHFQAYYL  PFPVEKAPT RI          V +S+L++YPVRGLVFE G  L DL+++
Sbjct: 235 LHFQAYYLANPFPVEKAPTVRIPHGTAKSG--VKVSELVDYPVRGLVFEGGSDLEDLANS 292

Query: 281 VASSCICLQNNNIPFNVLISDCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEISG 340
           VA +CICLQ+NNIP+N+LISDCG+R+ LFPQCYAEKQALGEVSQELLDTQVNPA WEISG
Sbjct: 293 VADACICLQDNNIPYNLLISDCGKRVFLFPQCYAEKQALGEVSQELLDTQVNPAVWEISG 352

Query: 341 HIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVLEAVG 384
           HIVLKR++D+E A+EEYAWR+L+EVSLSEERFQEVKA    A  
Sbjct: 353 HIVLKRKEDYERATEEYAWRLLAEVSLSEERFQEVKALCFAASA 396

Length = 403
>gnl|CDD|238608 cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 412
PLN03103403 GDP-L-galactose-hexose-1-phosphate guanyltransfera 100.0
KOG2720431 consensus Predicted hydrolase (HIT family) [Genera 100.0
COG4360298 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetr 99.98
PRK10687119 purine nucleoside phosphoramidase; Provisional 99.53
COG0537138 Hit Diadenosine tetraphosphate (Ap4A) hydrolase an 99.49
KOG3275127 consensus Zinc-binding protein of the histidine tr 99.47
PF0983062 ATP_transf: ATP adenylyltransferase; InterPro: IPR 99.38
cd01276104 PKCI_related Protein Kinase C Interacting protein 99.33
PF0123098 HIT: HIT domain; InterPro: IPR001310 The Histidine 99.32
cd01275126 FHIT FHIT (fragile histidine family): FHIT protein 99.32
cd01277103 HINT_subgroup HINT (histidine triad nucleotide-bin 99.29
cd0046886 HIT_like HIT family: HIT (Histidine triad) protein 99.27
cd01278104 aprataxin_related aprataxin related: Aprataxin, a 99.26
PF11969116 DcpS_C: Scavenger mRNA decapping enzyme C-term bin 98.69
PRK11720346 galactose-1-phosphate uridylyltransferase; Provisi 98.62
KOG3379150 consensus Diadenosine polyphosphate hydrolase and 98.61
TIGR00209347 galT_1 galactose-1-phosphate uridylyltransferase, 98.56
cd00608329 GalT Galactose-1-phosphate uridyl transferase (Gal 98.42
PLN02643336 ADP-glucose phosphorylase 98.37
TIGR01239489 galT_2 galactose-1-phosphate uridylyltransferase, 97.91
PRK05270493 galactose-1-phosphate uridylyltransferase; Provisi 97.79
KOG4359166 consensus Protein kinase C inhibitor-like protein 97.79
COG4468503 GalT Galactose-1-phosphate uridyltransferase [Carb 97.24
PF04677121 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; In 97.19
cd00608329 GalT Galactose-1-phosphate uridyl transferase (Gal 97.04
PLN02643336 ADP-glucose phosphorylase 96.89
PRK11720346 galactose-1-phosphate uridylyltransferase; Provisi 96.58
TIGR00209347 galT_1 galactose-1-phosphate uridylyltransferase, 95.35
KOG0562184 consensus Predicted hydrolase (HIT family) [Genera 94.5
KOG2476528 consensus Uncharacterized conserved protein [Funct 94.5
PF02611222 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: 90.66
COG1085338 GalT Galactose-1-phosphate uridylyltransferase [En 85.24
PRK05471252 CDP-diacylglycerol pyrophosphatase; Provisional 85.11
TIGR00672250 cdh CDP-diacylglycerol pyrophosphatase, bacterial 84.85
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.5e-110  Score=842.23  Aligned_cols=374  Identities=74%  Similarity=1.241  Sum_probs=354.9

Q ss_pred             CccccccceeeccccccccccccCCCCCCccCccCCCCCCCCCccceeeccCccccccc----ccCCCcccchHHHHHHH
Q 040147            1 MLTIKRVPTVVSNYQDQEETASENSEAGCGSNCLGNCSLPVSKLPLYQITKDKVDLTEE----ASGEEPRMSFLHDLLLG   76 (412)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~s~fd~lll~   76 (412)
                      |||||||||||||||++++..      ||||||||+||++|+|+|+|+|+..+....+.    .+.++...|+||++|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~c~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~s~ld~~L~~   74 (403)
T PLN03103          1 MLTIKRVPTVVSNYQDDDELG------GCGRNCLGKCCLPGAKLPLYAFKKVSKDDSGKLGSFSSKPEPSVSFLDSLLLA   74 (403)
T ss_pred             Ccceeecchhhhhhhhhcccc------CcchhhhhhcCCCCccCchhhhcccccccccccccccccCcCCccHHHHHHHH
Confidence            999999999999999999554      99999999999999999999999998776542    56778899999999999


Q ss_pred             HHHHHHHcCCceecccceeEEEeCCceEEEEEEccccccccccchhhhcccccccCcCCCCCCCCCcccccEEEecC---
Q 040147           77 QWEDRMNRGLFRYDVTSCETKIIPGEYGFIAQLNEGRHLKKRATEFRIDQVLQSFDENKFNFTKIGQEEMLFRLDDS---  153 (412)
Q Consensus        77 ~We~a~~~G~fry~l~~~~tK~~~g~~~fvvQlNp~R~~kkrpt~~~id~~~~pf~~~kfnF~ki~~~Eil~~~~~~---  153 (412)
                      +|+++|++|+|||+|++|+||++||+++|+||||++|++|||||++++|+++||||+.+|||+|+.++|++|++..+   
T Consensus        75 ~Wedr~~~GlFrY~l~~~~tkvlpG~~gFvaQLN~~R~~krR~~~f~i~~v~qpFd~~kFNF~KV~~~EvLf~~~~~~~~  154 (403)
T PLN03103         75 QWEDRMARGLFRYDVTACETKVIPGKYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGKKFNFTKVGQEEVLFQFEQGEDD  154 (403)
T ss_pred             HHHHHHhcCCcccccccceeEEecCccceEEEecccchhccCCCccchhhccCCCCCCcccCCCCCCceeEEEEecCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999642   


Q ss_pred             -------------CCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHHHHHHHHHcCCCCeEEEEecCCCCCCCCe
Q 040147          154 -------------KSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATINH  220 (412)
Q Consensus       154 -------------~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~~~~la~~~~~~gfrvfyNs~gA~ASv~H  220 (412)
                                   ++.++|++|+|||++||+||||+...|+||+|+.+++..++++|+++++++|||||||+||+|||||
T Consensus       155 ~~~~~~~~~~~~~~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~~~~l~la~~~a~~~~~p~frvgYNSlGA~ASvNH  234 (403)
T PLN03103        155 IPEFFPSAPIDASNSPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDPDSFLLALYMAAEANNPYFRVGYNSLGAFATINH  234 (403)
T ss_pred             ccccccCCccccCCCccEEEEeCCCCccCeEEEcCCcccCCCeEecHHHHHHHHHHHHhcCCCcEEEEecCCccccCcce
Confidence                         5667999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCCCCCCCCCCcccccccccccCCcceEEeccCCcceeEEEecCCcHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 040147          221 LHFQAYYLPLPFPVEKAPTSRIVTVKGHQDTQVIISQLLNYPVRGLVFEVGKSLRDLSHAVASSCICLQNNNIPFNVLIS  300 (412)
Q Consensus       221 lHfq~~~~~~~lPiE~~~~~~l~~~~~~~~~g~~i~~l~~yP~~~fvf~~~~~~~~L~~~l~~~l~~L~~~~~PyNLlit  300 (412)
                      ||||++|++.+||||++|++++..  .....++.+|++.+||+++|+|+++++.+++++.||+++++|+++++|||||+|
T Consensus       235 LHFQa~yl~~~lPvE~ap~~~l~~--~~~~~g~~vy~L~~yP~~~lvf~~~~~~~~l~~~v~~~~~~L~~~niP~NL~i~  312 (403)
T PLN03103        235 LHFQAYYLANPFPVEKAPTVRIPH--GTAKSGVKVSELVDYPVRGLVFEGGSDLEDLANSVADACICLQDNNIPYNLLIS  312 (403)
T ss_pred             eeeeecccCCCCccccCccccccc--cccCCCceEEEecCCCceEEEEEeCccHHHHHHHHHHHHHhhccCCcceEEEEE
Confidence            999999999999999999988852  223456789999999999999997778999999999999999999999999999


Q ss_pred             cCCeEEEEEecchHhhhhcccccccccccccccchhcccceeeecChhHHHHHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 040147          301 DCGRRIILFPQCYAEKQALGEVSQELLDTQVNPAAWEISGHIVLKRRKDFEEASEEYAWRVLSEVSLSEERFQEVKAYVL  380 (412)
Q Consensus       301 r~g~rv~l~PR~~~~kq~~ge~~~~lL~~~~spaa~ElaG~llvk~~edfe~lte~~~~~iL~evsl~e~~f~~l~~~l~  380 (412)
                      ++|||++|||+||++||++|++++++|+++||||+|||||||++|+++||+++||+.++++|+||++++++|++|++.|+
T Consensus       313 ~~g~rvflfP~Cy~~k~~~g~v~~~lL~s~~NPA~~EmsG~l~~~~~eDfe~lTE~~~~~il~EvsLse~~f~ev~~~i~  392 (403)
T PLN03103        313 DCGKRVFLFPQCYAEKQALGEVSQELLDTQVNPAVWEISGHIVLKRKEDYERATEEYAWRLLAEVSLSEERFQEVKALCF  392 (403)
T ss_pred             cCCeEEEEeCchhhhhhhccccchhHhhccCChhhHhhcceeeecchHhhhhcCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH
Q 040147          381 EA  382 (412)
Q Consensus       381 ~~  382 (412)
                      +.
T Consensus       393 ~~  394 (403)
T PLN03103        393 AA  394 (403)
T ss_pred             hc
Confidence            87

>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK10687 purine nucleoside phosphoramidase; Provisional Back     alignment and domain information
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms] Back     alignment and domain information
>PF09830 ATP_transf: ATP adenylyltransferase; InterPro: IPR019200 Diadenosine 5',5'''-P-1,P-4-tetraphosphate (Ap4A) and related diadenosine oligoposphates such as Ap3A are important intracellular and extracellular signalling molecules in prokaryotes and eukaryotes [] Back     alignment and domain information
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides Back     alignment and domain information
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms [] Back     alignment and domain information
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases Back     alignment and domain information
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides Back     alignment and domain information
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides Back     alignment and domain information
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome Back     alignment and domain information
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only] Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2 Back     alignment and domain information
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only] Back     alignment and domain information
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>KOG2476 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3 Back     alignment and domain information
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional Back     alignment and domain information
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 56.8 bits (136), Expect = 9e-09
 Identities = 59/454 (12%), Positives = 118/454 (25%), Gaps = 123/454 (27%)

Query: 27  AGCGSNCL-----------------------GNCSLPVSKLP-----LYQITKDKVDLTE 58
            G G   +                        NC+ P + L      LYQI  +    ++
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 59  EASGEEPRMSFLHDLLLGQWEDRM-NRGL--------------FRYDVTSCETKIIPGEY 103
            +S  + R+  +   L    + +     L              F  ++ SC+  +     
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NL-SCKILLTTRFK 275

Query: 104 GFIAQLNEGRHLKKRATEFRIDQVLQSFDENKFNFTKIGQEEML---FRLDDSKSPSVVA 160
                L+         T   +D    +   ++        + +L           P    
Sbjct: 276 QVTDFLSA-----ATTTHISLDHHSMTLTPDE-------VKSLLLKYLDCRPQDLPR-EV 322

Query: 161 INVSPIEYGHVLLIPRVLDCLPQRIDHESFLLALYVAKEAADPFFRLGYNSLGAFATINH 220
           +  +P     + +I   +       D+       +V  +          N L        
Sbjct: 323 LTTNPR---RLSIIAESIRDGLATWDN-----WKHVNCDKLTTIIESSLNVL------EP 368

Query: 221 LHFQAYYLPLP-FPVE-KAPTSRIVTV---KGHQDTQVIISQLLNYPVRGLVFEVGKSLR 275
             ++  +  L  FP     PT  +  +       D  V++++L  Y    LV +  K   
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---SLVEKQPKEST 425

Query: 276 DLSHAVASSCICLQNNNIPFNVLISDCGRRIILFPQCYAEKQAL--GEVSQELLDTQVNP 333
               ++         N    +       R I+     Y   +     ++    LD     
Sbjct: 426 ISIPSIYLELKVKLENEYALH-------RSIV---DHYNIPKTFDSDDLIPPYLD---QY 472

Query: 334 AAWEISGHIVLKRRKD-FEEASEEY---------------AWRVLSEVSLSEERFQEVKA 377
               I  H+      +        +               AW     +  + ++ +  K 
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

Query: 378 YVLEAVGLQKPILEENGIIQEEDSLDKLPALEAQ 411
           Y+ +      P  E          LD LP +E  
Sbjct: 533 YICD----NDPKYER----LVNAILDFLPKIEEN 558
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
3n1s_A119 HIT-like protein HINT; histidine triad nucleotide 99.54
3o1c_A126 Histidine triad nucleotide-binding protein 1; hydr 99.5
3oj7_A117 Putative histidine triad family protein; hydrolase 99.49
4egu_A119 Histidine triad (HIT) protein; structural genomics 99.48
3ksv_A149 Uncharacterized protein; HIT family, structural ge 99.48
3o0m_A149 HIT family protein; ssgcid, NIH, niaid, SBRI, UW, 99.47
3imi_A147 HIT family protein; structural genomics, infectiou 99.46
3lb5_A161 HIT-like protein involved in cell-cycle regulatio; 99.44
2eo4_A149 150AA long hypothetical histidine triad nucleotid 99.42
3l7x_A173 SMU.412C, putative HIT-like protein involved in ce 99.42
1y23_A145 HIT, histidine triad protein; HIT protein, PKCI-1, 99.4
1xqu_A147 HIT family hydrolase; protein STRU initiative, PSI 99.37
3ano_A218 AP-4-A phosphorylase; diadenosine polyphosphate, H 99.3
3r6f_A135 HIT family protein; structural genomics, seattle s 99.29
1fit_A147 FragIle histidine protein; FHIT, fragIle histidine 99.28
3p0t_A138 Uncharacterized protein; ssgcid, HIT-like protein, 99.27
1ems_A440 Nitfhit, NIT-fragIle histidine triad fusion protei 99.06
2oik_A154 Histidine triad (HIT) protein; HIT-like fold, stru 99.03
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 98.88
1gup_A348 Galactose-1-phosphate uridylyltransferase; nucleot 98.87
3ohe_A137 Histidine triad (HIT) protein; structural genomics 98.8
3i24_A149 HIT family hydrolase; structural genomics, PSI-2, 98.72
3sp4_A204 Aprataxin-like protein; HIT domain, zinc finger, D 98.59
3nrd_A135 Histidine triad (HIT) protein; structural genomics 98.49
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 98.36
3i4s_A149 Histidine triad protein; hydrolase, phosphatase, H 98.26
3bl9_A301 Scavenger mRNA-decapping enzyme DCPS; ligand compl 95.58
1vlr_A350 MRNA decapping enzyme; 16740816, structural genomi 95.19
1gup_A348 Galactose-1-phosphate uridylyltransferase; nucleot 94.23
2pof_A227 CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM0 91.06
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A* Back     alignment and structure
Probab=99.54  E-value=3.4e-15  Score=127.73  Aligned_cols=96  Identities=21%  Similarity=0.196  Sum_probs=77.4

Q ss_pred             CCCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHH---HHHH----HHHHHHH--cCCCCe
Q 040147          135 KFNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHE---SFLL----ALYVAKE--AADPFF  205 (412)
Q Consensus       135 kfnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~---~l~~----~~~la~~--~~~~gf  205 (412)
                      .+.||++..+|++..+.++++.++++.|.+|+.|||+||||+++...-..|+++   .+..    +.++++.  .+..||
T Consensus         4 ~CiFC~I~~ge~~~~iv~ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~g~   83 (119)
T 3n1s_A            4 ETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGY   83 (119)
T ss_dssp             CCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTTCE
T ss_pred             CChhhhhhcCCCcCCEEEECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCCCCCe
Confidence            467999988899988999999999999999999999999999965555556655   2333    3344443  345799


Q ss_pred             EEEEec-CCCCCCCCeeEEEEeeCCC
Q 040147          206 RLGYNS-LGAFATINHLHFQAYYLPL  230 (412)
Q Consensus       206 rvfyNs-~gA~ASv~HlHfq~~~~~~  230 (412)
                      |+++|+ ..||+||+|+|+|+++...
T Consensus        84 ni~~n~g~~agq~V~HlH~Hiipr~~  109 (119)
T 3n1s_A           84 RLIMNTNRHGGQEVYHIHMHLLGGRP  109 (119)
T ss_dssp             EEEEEEHHHHTCCSSSCCEEEEESSC
T ss_pred             EEEEeCCCCcCCCcCEEEEEEeCCcc
Confidence            999999 7889999999999998743
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A Back     alignment and structure
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A* Back     alignment and structure
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile} Back     alignment and structure
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0 Back     alignment and structure
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str} Back     alignment and structure
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1 Back     alignment and structure
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae} Back     alignment and structure
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans} Back     alignment and structure
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1 Back     alignment and structure
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Back     alignment and structure
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Back     alignment and structure
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi} Back     alignment and structure
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Back     alignment and structure
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp} Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1 Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei} Back     alignment and structure
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} Back     alignment and structure
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Back     alignment and structure
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti} Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} Back     alignment and structure
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A* Back     alignment and structure
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B* Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
d1kpfa_111 Protein kinase C inhibitor-1, PKCI-1 {Human (Homo 99.57
d1y23a_139 Hit {Bacillus subtilis [TaxId: 1423]} 99.55
d1emsa1160 NIT-FHIT fusion protein, C-terminal domain {Nemato 99.51
d1xqua_113 Putative hydrolase {Clostridium thermocellum [TaxI 99.51
d1fita_146 FHIT (fragile histidine triad protein) {Human (Hom 99.3
d2oika1139 Histidine triad protein Mfla2506 {Methylobacillus 99.11
d1z84a2156 Galactose-1-phosphate uridylyltransferase {Thale c 98.94
d1guqa2171 Galactose-1-phosphate uridylyltransferase {Escheri 98.83
d1vlra1192 mRNA decapping enzyme DcpS C-terminal domain {Mous 97.84
d1z84a1173 Galactose-1-phosphate uridylyltransferase {Thale c 96.92
d1guqa1176 Galactose-1-phosphate uridylyltransferase {Escheri 96.11
d2pofa1220 CDP-diacylglycerol pyrophosphatase CDH {Escherichi 90.94
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.2e-16  Score=130.77  Aligned_cols=94  Identities=17%  Similarity=0.142  Sum_probs=75.8

Q ss_pred             CCCCCCCcccccEEEecCCCcEEEEEcCCCCCCceEEEeeccccCcccccCHHHHHH---H----HHHHHHcC-CCCeEE
Q 040147          136 FNFTKIGQEEMLFRLDDSKSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHESFLL---A----LYVAKEAA-DPFFRL  207 (412)
Q Consensus       136 fnF~ki~~~Eil~~~~~~~~~~~vllN~~Pi~~~H~LlVP~~~~~~pq~l~~~~l~~---~----~~la~~~~-~~gfrv  207 (412)
                      +.||||..+|++..+.++|+.+++++|++|+.+||+|+||+++...-..++.+....   +    .++++... ..||++
T Consensus         2 CiFc~I~~~e~p~~ivyede~~~af~D~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i   81 (111)
T d1kpfa_           2 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRM   81 (111)
T ss_dssp             CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCSCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEE
T ss_pred             CcccccccCCCCccEEEeCCCEEEEecCCCCCCceEEEeecchhcchhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence            569999999999999999999999999999999999999999766655566543222   2    23333332 469999


Q ss_pred             EEec-CCCCCCCCeeEEEEeeCC
Q 040147          208 GYNS-LGAFATINHLHFQAYYLP  229 (412)
Q Consensus       208 fyNs-~gA~ASv~HlHfq~~~~~  229 (412)
                      ++|. ..||+||+|+|+|+++..
T Consensus        82 ~~n~g~~agq~V~HlH~Hiip~~  104 (111)
T d1kpfa_          82 VVNEGSDGGQSVYHVHLHVLGGR  104 (111)
T ss_dssp             ECCCHHHHTCCSSSCCEEEEESS
T ss_pred             EEeCCccCCcccceeEEEEeCCC
Confidence            9999 889999999999999864
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Back     information, alignment and structure
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure