Citrus Sinensis ID: 040148

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MDRGNCSPRYMRCTIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQKKPSL
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHEEEEEEEcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdrgncsprymrctigqqydnplskkFNDVVNEMRRERcsylrprscqegdlsgmFSSKmiedknpngpsYFEFLVQIHREIQKKPSL
Flexible Loop (DISEMBL)
mdrgncsprymrctigqqydnplskKFNDVVNEMRRercsylrprscqegdlSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQKKPSL
Low Complexity Region (SEG)
MDRGNCSPRYMRCTIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQKKPSL
Disordered region (IsUnstruct)
*********YMRCTIGQQYD******F*DVV***************************************YFEFLVQIH*********
Disordered Region (DISOPRED)
********RYMRCTIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQKKP**
Disordered Region (DISEMBL)
MDRGNCSPRYMRCTIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQKKPSL
Disordered Region (DISPRO)
****NCSPRYMRCTIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQK****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDRGNCSPRYMRCTIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGMFSSKMIEDKNPNGPSYFEFLVQIHREIQKKPSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
Q9M081	1080	Protein transport protein	yes	no	0.784	0.063	0.671	7e-21
Q9M291	1096	Protein transport protein	no	no	0.784	0.062	0.591	9e-18
P53992	1094	Protein transport protein	yes	no	0.738	0.059	0.358	4e-05

>sp|Q9M081|SC24B_ARATH Protein transport protein Sec24-like At4g32640 OS=Arabidopsis thaliana GN=At4g32640 PE=1 SV=3

 Score = 99.4 bits (246), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 58/70 (82%), Gaps = 1/70 (1%)

Query: 17   QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGPSYFEFL 75
            QQYDN LSKKFND VNE+RR+RCSYLR + C++G+ SGM F S M+ED+  +GPSY EFL
Sbjct: 1009 QQYDNQLSKKFNDAVNEIRRQRCSYLRIKLCKKGEPSGMLFLSYMVEDRTASGPSYVEFL 1068

Query: 76   VQIHREIQKK 85
            VQ+HR+IQ K
Sbjct: 1069 VQVHRQIQLK 1078

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=1 SV=3

 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 55/71 (77%), Gaps = 2/71 (2%)

Query: 17   QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSG--MFSSKMIEDKNPNGPSYFEF 74
            Q+YDN LSKKFNDVVNE+RR+R SYLR + C++GD +G  +F S M+ED+   G SY +F
Sbjct: 1024 QKYDNQLSKKFNDVVNEIRRQRSSYLRIKLCKKGDPAGNMLFQSYMVEDRGSGGASYVDF 1083

Query: 75   LVQIHREIQKK 85
            LV +HR+IQ K
Sbjct: 1084 LVSVHRQIQHK 1094

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.

Arabidopsis thaliana (taxid: 3702)

>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo sapiens GN=SEC24C PE=1 SV=3

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 20   DNPLSKKFNDVVNEMRRERCSYLRPRSC-QEGDLSGMFSSKMIEDKN-PNGPSYFEFLVQ 77
            DNPLSKK   +++ +R +R  Y++     QE  +  +F   ++EDK+   G SY +FL  
Sbjct: 1025 DNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCH 1084

Query: 78   IHREIQK 84
            +H+EI++
Sbjct: 1085 MHKEIRQ 1091

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
449498633	577	PREDICTED: protein transport protein Sec	0.840	0.128	0.666	3e-21
449458918	1105	PREDICTED: protein transport protein Sec	0.818	0.065	0.671	2e-20
443609449	1092	Sec24-like transport protein [Arabidopsi	0.784	0.063	0.671	3e-19
334187094	1080	sec24-like transport protein [Arabidopsi	0.784	0.063	0.671	3e-19
356574157	1087	PREDICTED: protein transport protein Sec	0.806	0.065	0.652	2e-18
312283323	1074	unnamed protein product [Thellungiella h	0.784	0.064	0.657	2e-18
255542372	1094	Protein transport protein Sec24C, putati	0.784	0.063	0.690	5e-18
356534416	1085	PREDICTED: protein transport protein Sec	0.784	0.063	0.642	7e-18
359493759	1124	PREDICTED: protein transport protein Sec	0.806	0.063	0.666	9e-18
297818900	1096	hypothetical protein ARALYDRAFT_484854 [	0.784	0.062	0.619	2e-17

>gi|449498633|ref|XP_004160590.1| PREDICTED: protein transport protein Sec24-like CEF-like [Cucumis sativus]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 61/75 (81%), Gaps = 1/75 (1%)

Query: 14  TIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGPSYF 72
           ++ QQYDNPLSKK ND++NE+RR+RCSYLR R C++GD SGM F S MIEDK+  GPSY 
Sbjct: 501 SVLQQYDNPLSKKLNDLMNEIRRQRCSYLRLRLCKKGDQSGMLFFSNMIEDKSSTGPSYI 560

Query: 73  EFLVQIHREIQKKPS 87
           EFLV +HR+IQ K S
Sbjct: 561 EFLVHVHRQIQIKMS 575

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458918|ref|XP_004147193.1| PREDICTED: protein transport protein Sec24-like At4g32640-like [Cucumis sativus]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/73 (67%), Positives = 60/73 (82%), Gaps = 1/73 (1%)

Query: 14   TIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGPSYF 72
            ++ QQYDNPLSKK ND++NE+RR+RCSYLR R C++GD SGM F S MIEDK+  GPSY 
Sbjct: 1029 SVLQQYDNPLSKKLNDLMNEIRRQRCSYLRLRLCKKGDQSGMLFFSNMIEDKSSTGPSYI 1088

Query: 73   EFLVQIHREIQKK 85
            EFLV +HR+IQ K
Sbjct: 1089 EFLVHVHRQIQIK 1101

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|443609449|dbj|BAM76809.1| Sec24-like transport protein [Arabidopsis thaliana]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 58/70 (82%), Gaps = 1/70 (1%)

Query: 17   QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGPSYFEFL 75
            QQYDN LSKKFND VNE+RR+RCSYLR + C++G+ SGM F S M+ED+  +GPSY EFL
Sbjct: 1021 QQYDNQLSKKFNDAVNEIRRQRCSYLRIKLCKKGEPSGMLFLSYMVEDRTASGPSYVEFL 1080

Query: 76   VQIHREIQKK 85
            VQ+HR+IQ K
Sbjct: 1081 VQVHRQIQLK 1090

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187094|ref|NP_194990.5| sec24-like transport protein [Arabidopsis thaliana] gi|334187096|ref|NP_001119101.5| sec24-like transport protein [Arabidopsis thaliana] gi|347595780|sp|Q9M081.3|SC24B_ARATH RecName: Full=Protein transport protein Sec24-like At4g32640 gi|332660694|gb|AEE86094.1| sec24-like transport protein [Arabidopsis thaliana] gi|332660695|gb|AEE86095.1| sec24-like transport protein [Arabidopsis thaliana]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 58/70 (82%), Gaps = 1/70 (1%)

Query: 17   QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGPSYFEFL 75
            QQYDN LSKKFND VNE+RR+RCSYLR + C++G+ SGM F S M+ED+  +GPSY EFL
Sbjct: 1009 QQYDNQLSKKFNDAVNEIRRQRCSYLRIKLCKKGEPSGMLFLSYMVEDRTASGPSYVEFL 1068

Query: 76   VQIHREIQKK 85
            VQ+HR+IQ K
Sbjct: 1069 VQVHRQIQLK 1078

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574157|ref|XP_003555218.1| PREDICTED: protein transport protein Sec24-like At4g32640-like [Glycine max]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/72 (65%), Positives = 57/72 (79%), Gaps = 1/72 (1%)

Query: 17   QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGPSYFEFL 75
            QQYDNPLSKK N+VVNE+RR+RCSY R + C++GD SGM F S MIEDK+  G SY EFL
Sbjct: 1015 QQYDNPLSKKLNEVVNEIRRQRCSYFRFKLCRKGDPSGMLFFSYMIEDKSAGGFSYVEFL 1074

Query: 76   VQIHREIQKKPS 87
            + +HR+IQ K S
Sbjct: 1075 IHVHRQIQNKMS 1086

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283323|dbj|BAJ34527.1| unnamed protein product [Thellungiella halophila]

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 17   QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGPSYFEFL 75
            Q+YDN LSKKFNDVVNE+RR+R SYLR + C++GD +GM F S M+EDK   GPSY EFL
Sbjct: 1003 QRYDNQLSKKFNDVVNEIRRQRSSYLRLKLCKKGDPTGMLFLSYMVEDKTSGGPSYVEFL 1062

Query: 76   VQIHREIQKK 85
            V++HR+IQ K
Sbjct: 1063 VEVHRQIQHK 1072

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542372|ref|XP_002512249.1| Protein transport protein Sec24C, putative [Ricinus communis] gi|223548210|gb|EEF49701.1| Protein transport protein Sec24C, putative [Ricinus communis]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 56/71 (78%), Gaps = 2/71 (2%)

Query: 17   QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGP-SYFEF 74
             QYDNPLSKKFNDVVNE+RR RCSYLR + C++GD SG+ F S +IEDK P G  SY EF
Sbjct: 1021 HQYDNPLSKKFNDVVNEIRRRRCSYLRFKLCKKGDPSGISFFSYLIEDKVPTGGLSYVEF 1080

Query: 75   LVQIHREIQKK 85
            LV IHR+IQ K
Sbjct: 1081 LVHIHRQIQMK 1091

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534416|ref|XP_003535751.1| PREDICTED: protein transport protein Sec24-like At4g32640-like [Glycine max]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 56/70 (80%), Gaps = 1/70 (1%)

Query: 17   QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGPSYFEFL 75
            QQYDNPLSKK N+V+NE+RR+RC YLR + C++GD SGM F S MIEDK+  G SY EFL
Sbjct: 1013 QQYDNPLSKKLNEVINEIRRQRCCYLRFKLCRKGDPSGMLFFSYMIEDKSAGGFSYVEFL 1072

Query: 76   VQIHREIQKK 85
            + +HR+IQ K
Sbjct: 1073 IHVHRQIQNK 1082

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493759|ref|XP_002279640.2| PREDICTED: protein transport protein Sec24-like At4g32640-like [Vitis vinifera] gi|302143220|emb|CBI20515.3| unnamed protein product [Vitis vinifera]

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/72 (66%), Positives = 57/72 (79%), Gaps = 1/72 (1%)

Query: 17   QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGPSYFEFL 75
            QQYDNPLSKK N++VNE+RR+RCSYLR + C++GD SGM F S M+EDK   G SY EFL
Sbjct: 1053 QQYDNPLSKKLNELVNEIRRQRCSYLRIKLCRKGDASGMLFFSFMVEDKTAIGLSYVEFL 1112

Query: 76   VQIHREIQKKPS 87
            V IHR+IQ K S
Sbjct: 1113 VHIHRQIQIKMS 1124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818900|ref|XP_002877333.1| hypothetical protein ARALYDRAFT_484854 [Arabidopsis lyrata subsp. lyrata] gi|297323171|gb|EFH53592.1| hypothetical protein ARALYDRAFT_484854 [Arabidopsis lyrata subsp. lyrata]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 57/71 (80%), Gaps = 2/71 (2%)

Query: 17   QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSG--MFSSKMIEDKNPNGPSYFEF 74
            Q+YDN LSKKFNDVVNE+RR+R SYLR + C++GD +G  +F S M+ED+  +GPSY EF
Sbjct: 1024 QKYDNQLSKKFNDVVNEIRRQRSSYLRLKLCKKGDPAGNMLFQSYMVEDRGSSGPSYVEF 1083

Query: 75   LVQIHREIQKK 85
            LV +HR+IQ K
Sbjct: 1084 LVSVHRQIQHK 1094

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
TAIR|locus:2100202	1096	CEF "AT3G44340" [Arabidopsis t	0.784	0.062	0.591	1.2e-21
UNIPROTKB|F1SU53	1086	SEC24C "Uncharacterized protei	0.738	0.059	0.358	1.3e-08
ZFIN|ZDB-GENE-070117-2501	1029	sec24d "SEC24 family, member D	0.738	0.063	0.313	3.8e-08
FB|FBgn0262126	1193	gho "ghost" [Drosophila melano	0.727	0.053	0.303	1.1e-06
UNIPROTKB|B4DZT4	342	SEC24C "cDNA FLJ60379, highly	0.738	0.190	0.358	1.6e-06
ZFIN|ZDB-GENE-030131-4487	1241	sec24c "SEC24 family, member C	0.738	0.052	0.358	5.9e-06
UNIPROTKB|E7EP00	975	SEC24C "Protein transport prot	0.738	0.066	0.358	7.2e-06
UNIPROTKB|P53992	1094	SEC24C "Protein transport prot	0.738	0.059	0.358	8.3e-06
UNIPROTKB|E2RE90	1096	SEC24C "Uncharacterized protei	0.738	0.059	0.373	8.3e-06
UNIPROTKB|J9JHK6	1119	SEC24C "Uncharacterized protei	0.738	0.058	0.373	8.5e-06

TAIR|locus:2100202 CEF "AT3G44340" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 42/71 (59%), Positives = 55/71 (77%)

Query:    17 QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSG--MFSSKMIEDKNPNGPSYFEF 74
             Q+YDN LSKKFNDVVNE+RR+R SYLR + C++GD +G  +F S M+ED+   G SY +F
Sbjct:  1024 QKYDNQLSKKFNDVVNEIRRQRSSYLRIKLCKKGDPAGNMLFQSYMVEDRGSGGASYVDF 1083

Query:    75 LVQIHREIQKK 85
             LV +HR+IQ K
Sbjct:  1084 LVSVHRQIQHK 1094

GO:0005215 "transporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|F1SU53 SEC24C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 107 (42.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    20 DNPLSKKFNDVVNEMRRERCSYLRPRSC-QEGDLSGMFSSKMIEDKN-PNGPSYFEFLVQ 77
             DN LSKK   +++ +R +R  Y++     QE  L  +F   ++EDK+   G SY +FL  
Sbjct:  1017 DNLLSKKVRGLIDNLRAQRSRYMKLIVVKQEDKLEMLFKHFLVEDKSLSGGASYVDFLCH 1076

Query:    78 IHREIQK 84
             +H+EI++
Sbjct:  1077 MHKEIRQ 1083

GO:0005634 "nucleus" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

ZFIN|ZDB-GENE-070117-2501 sec24d "SEC24 family, member D (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 102 (41.0 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
 Identities = 21/67 (31%), Positives = 42/67 (62%)

Query:    20 DNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNG-PSYFEFLVQ 77
             DNP S+K + +++ + ++R + ++    ++ D + M F   ++EDK  +G  SY +FL  
Sbjct:   960 DNPHSRKLHSIISRISQQRAASMKLLIVKQKDRAEMSFRQLLVEDKGLHGGASYMDFLCF 1019

Query:    78 IHREIQK 84
             +HREI++
Sbjct:  1020 VHREIRQ 1026

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0070278 "extracellular matrix constituent secretion" evidence=IMP

GO:0048703 "embryonic viscerocranium morphogenesis" evidence=IMP

GO:0060536 "cartilage morphogenesis" evidence=IMP

FB|FBgn0262126 gho "ghost" [Drosophila melanogaster (taxid:7227)]

 Score = 105 (42.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 20/66 (30%), Positives = 41/66 (62%)

Query:    20 DNPLSKKFNDVVNEMRRERCSYLRPRSCQEGD-LSGMFSSKMIEDKNPNGP-SYFEFLVQ 77
             + PL+K+ + ++ ++ +ER  Y+R    ++ D L  +F   ++ED+  +G  SY +FL  
Sbjct:  1124 ETPLAKRIHGILEQIMKERSRYMRITWLRQNDKLESVFRHFLVEDRGTDGSASYVDFLCH 1183

Query:    78 IHREIQ 83
             +H+EI+
Sbjct:  1184 MHKEIK 1189

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0035158 "regulation of tube diameter, open tracheal system" evidence=IMP

GO:0009306 "protein secretion" evidence=IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0070971 "endoplasmic reticulum exit site" evidence=IDA

GO:0003331 "positive regulation of extracellular matrix constituent secretion" evidence=IMP

GO:0007029 "endoplasmic reticulum organization" evidence=IMP

GO:0048081 "positive regulation of cuticle pigmentation" evidence=IMP

GO:0030011 "maintenance of cell polarity" evidence=IMP

GO:0007030 "Golgi organization" evidence=IMP

GO:0016203 "muscle attachment" evidence=IMP

GO:0035149 "lumen formation, open tracheal system" evidence=IMP

GO:0034394 "protein localization to cell surface" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0071711 "basement membrane organization" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

UNIPROTKB|B4DZT4 SEC24C "cDNA FLJ60379, highly similar to Protein transport protein Sec24C" [Homo sapiens (taxid:9606)]

 Score = 117 (46.2 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    20 DNPLSKKFNDVVNEMRRERCSYLRPRSC-QEGDLSGMFSSKMIEDKN-PNGPSYFEFLVQ 77
             DNPLSKK   +++ +R +R  Y++     QE  +  +F   ++EDK+   G SY +FL  
Sbjct:   273 DNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCH 332

Query:    78 IHREIQK 84
             +H+EI++
Sbjct:   333 MHKEIRQ 339

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

ZFIN|ZDB-GENE-030131-4487 sec24c "SEC24 family, member C (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 119 (46.9 bits), Expect = 5.9e-06, P = 5.9e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    20 DNPLSKKFNDVVNEMRRERCSYLRPRSC-QEGDLSGMFSSKMIEDKNPNG-PSYFEFLVQ 77
             DNP SK+  +++  +R +R  Y++     QE  L  +F   ++EDK+ NG  SY +FL  
Sbjct:  1172 DNPFSKRLKEIIESIRAQRSRYMKLMVVKQEDKLELIFKHFLVEDKSNNGGASYVDFLCH 1231

Query:    78 IHREIQK 84
             +H+EI++
Sbjct:  1232 MHKEIRQ 1238

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E7EP00 SEC24C "Protein transport protein Sec24C" [Homo sapiens (taxid:9606)]

 Score = 117 (46.2 bits), Expect = 7.2e-06, P = 7.2e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    20 DNPLSKKFNDVVNEMRRERCSYLRPRSC-QEGDLSGMFSSKMIEDKN-PNGPSYFEFLVQ 77
             DNPLSKK   +++ +R +R  Y++     QE  +  +F   ++EDK+   G SY +FL  
Sbjct:   906 DNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCH 965

Query:    78 IHREIQK 84
             +H+EI++
Sbjct:   966 MHKEIRQ 972

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|P53992 SEC24C "Protein transport protein Sec24C" [Homo sapiens (taxid:9606)]

 Score = 117 (46.2 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    20 DNPLSKKFNDVVNEMRRERCSYLRPRSC-QEGDLSGMFSSKMIEDKN-PNGPSYFEFLVQ 77
             DNPLSKK   +++ +R +R  Y++     QE  +  +F   ++EDK+   G SY +FL  
Sbjct:  1025 DNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCH 1084

Query:    78 IHREIQK 84
             +H+EI++
Sbjct:  1085 MHKEIRQ 1091

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS;TAS

GO:0030127 "COPII vesicle coat" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0048208 "COPII vesicle coating" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E2RE90 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 117 (46.2 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    20 DNPLSKKFNDVVNEMRRERCSYLRPRSC-QEGDLSGMFSSKMIEDKN-PNGPSYFEFLVQ 77
             DNPLSKK   +++ +R +R  Y++     QE  L  +F   ++EDK+   G SY +FL  
Sbjct:  1027 DNPLSKKVRGLIDSLRAQRSRYMKLIVVKQEDKLEMLFKHFLVEDKSLSGGASYVDFLCH 1086

Query:    78 IHREIQK 84
             +H+EI++
Sbjct:  1087 MHKEIRQ 1093

GO:0005634 "nucleus" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|J9JHK6 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 117 (46.2 bits), Expect = 8.5e-06, P = 8.5e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    20 DNPLSKKFNDVVNEMRRERCSYLRPRSC-QEGDLSGMFSSKMIEDKN-PNGPSYFEFLVQ 77
             DNPLSKK   +++ +R +R  Y++     QE  L  +F   ++EDK+   G SY +FL  
Sbjct:  1050 DNPLSKKVRGLIDSLRAQRSRYMKLIVVKQEDKLEMLFKHFLVEDKSLSGGASYVDFLCH 1109

Query:    78 IHREIQK 84
             +H+EI++
Sbjct:  1110 MHKEIRQ 1116

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G32640	protein binding / zinc ion binding; protein binding / zinc ion binding; FUNCTIONS IN- protein binding, zinc ion binding; INVOLVED IN- intracellular protein transport, ER to Golgi vesicle-mediated transport; LOCATED IN- COPII vesicle coat; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Sec23/Sec24 helical region (InterPro-IPR006900), Sec23/Sec24 beta-sandwich (InterPro-IPR012990), Sec23/Sec24 trunk region (InterPro-IPR006896), Zinc finger, Sec23/Sec24-type (InterPro-IPR006895), Gelsolin region (InterPro-IPR007123); BEST Arabidopsis tha [...] (1080 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT3G63460	WD-40 repeat family protein; WD-40 repeat family protein; FUNCTIONS IN- molecular_function unkn [...] (1104 aa)				•		•	•	•	0.940
	AT4G14160	transport protein, putative; transport protein, putative; FUNCTIONS IN- protein binding, transp [...] (773 aa)				•	•	•	•	•	0.938
	AT3G07100	protein transport protein Sec24, putative; protein transport protein Sec24, putative; FUNCTIONS [...] (1038 aa)				•	•	•	•	•	0.927
	AT3G23660	transport protein, putative; transport protein, putative; FUNCTIONS IN- protein binding, transp [...] (765 aa)				•	•	•	•	•	0.916
	AT1G05520	transport protein, putative; transport protein, putative; FUNCTIONS IN- protein binding, transp [...] (783 aa)					•	•	•	•	0.910
	CEF	CEF (clone eighty-four); protein binding / transporter/ zinc ion binding; homologous to yeast a [...] (1096 aa)				•		•	•	•	0.910
	AT2G30050	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (302 aa)						•	•		0.909
	AT2G21630	transport protein, putative; transport protein, putative; FUNCTIONS IN- protein binding, transp [...] (761 aa)					•	•	•	•	0.909
	AT3G01340	protein transport protein SEC13 family protein / WD-40 repeat family protein; protein transport [...] (302 aa)						•	•		0.908
	AT5G43670	transport protein, putative; transport protein, putative; FUNCTIONS IN- protein binding, transp [...] (794 aa)					•	•	•	•	0.907

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	88
COG5028	861	COG5028, COG5028, Vesicle coat complex COPII, subu	2e-05

>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 20  DNPLSKKFNDVVNEMRRE-RCSYLRP---RSCQEGDLSGMFSSKMIEDKNPNGPSYFEFL 75
            N  +++  +++ E+R     S L     R   +  L   F S ++EDK  N PSY ++L
Sbjct: 793 GNEFNERVRNIIGELRSVNDDSTLPLVLVRGGGDPSLRLWFFSTLVEDKTLNIPSYLDYL 852

Query: 76  VQIHREIQK 84
             +H +I+ 
Sbjct: 853 QILHEKIKS 861

Length = 861

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PTZ00395	1560	Sec24-related protein; Provisional	99.81
KOG1984	1007	consensus Vesicle coat complex COPII, subunit SFB3	99.64
KOG1985	887	consensus Vesicle coat complex COPII, subunit SEC2	99.64
COG5028	861	Vesicle coat complex COPII, subunit SEC24/subunit	99.56
KOG3355	177	consensus Mitochondrial sulfhydryl oxidase involve	83.09

>PTZ00395 Sec24-related protein; Provisional

Probab=99.81  E-value=7.2e-20  Score=155.56  Aligned_cols=74  Identities=22%  Similarity=0.275  Sum_probs=69.7

Q ss_pred             ccccCCCCCHHHHHHHHHHHHHHhhC--CCccccEEeecCCchHH-HHhhhhccCCCCCCCHHHHHHHHHHHHHhCC
Q 040148           13 CTIGQQYDNPLSKKFNDVVNEMRRER--CSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGPSYFEFLVQIHREIQKKP   86 (88)
Q Consensus        13 ~~~LP~l~t~~s~rlr~iI~~lr~~~--~~~~~l~vvrq~d~~e~-f~~~LVEDr~~~~~SY~efL~~ihr~I~~~l   86 (88)
                      ..+||+++|++|+||++||++||+.+  +.|+||+|||++|+.|. |+++|||||+.+++||+||||+|||+|++++
T Consensus      1481 ~~eLPelDT~iS~RVrnII~~LR~~r~~~~Y~pL~IVRqgDp~E~~F~s~LVEDRs~g~~SYvDFLc~LHKqIq~kl 1557 (1560)
T PTZ00395       1481 AHELNLTDTPNAQKVQRIIKNLSRIHHFNKYVPLVMVAPKSNEEEHLISLCVEDKADKEYSYVNFLCFIHKLVHKRI 1557 (1560)
T ss_pred             cccccCCCCHHHHHHHHHHHHHHHhccCCCcceEEEEeCCCchHHHHHHhCeecCCCCCCCHHHHHHHHHHHHHHhc
Confidence            35799999999999999999999986  48999999999999999 9999999999999999999999999999986

>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=3.2e-16  Score=129.45  Aligned_cols=76  Identities=37%  Similarity=0.594  Sum_probs=71.1

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHHhhCCCccccEEeecC-CchHH-HHhhhhccCCCCCCCHHHHHHHHHHHHHhCCC
Q 040148           12 RCTIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEG-DLSGM-FSSKMIEDKNPNGPSYFEFLVQIHREIQKKPS   87 (88)
Q Consensus        12 ~~~~LP~l~t~~s~rlr~iI~~lr~~~~~~~~l~vvrq~-d~~e~-f~~~LVEDr~~~~~SY~efL~~ihr~I~~~l~   87 (88)
                      .+.+||++||++|+++|++|..||+.|..++++.++|+| ++.+. |.++||||++.+.+||+||||.||++|+++++
T Consensus       930 ~~~~Lpe~dn~lS~k~r~~i~~i~~~r~~~l~v~~~k~g~~~~~~~~~~~lved~~~~~~sY~dyL~~~H~ki~~~l~ 1007 (1007)
T KOG1984|consen  930 QSGVLPELDNPLSRKVRNVISLIRRQRSSELPVVLVKQGLDGSEVEFSEYLVEDRGRNISSYVDYLCELHKKIQQKLS 1007 (1007)
T ss_pred             ccccccccCcHHHHHHHHHHHHHHhccccccccEEEecCCCchhhhhhhhhhcccccCccccchHHHHHHHHHHhhcC
Confidence            458999999999999999999999999999999999999 56667 89999999999999999999999999999874

>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=4.1e-16  Score=128.16  Aligned_cols=73  Identities=25%  Similarity=0.430  Sum_probs=67.4

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHHhhCCCccccEEeecCC--chHH-HHhhhhccCCCCCCCHHHHHHHHHHHHHh
Q 040148           12 RCTIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGD--LSGM-FSSKMIEDKNPNGPSYFEFLVQIHREIQK   84 (88)
Q Consensus        12 ~~~~LP~l~t~~s~rlr~iI~~lr~~~~~~~~l~vvrq~d--~~e~-f~~~LVEDr~~~~~SY~efL~~ihr~I~~   84 (88)
                      ++++||+++|+.|.++++||.++|..+..+..++|||+++  +... |++.|||||+.+..||+|||+|||++|++
T Consensus       812 ~~~~lp~~~n~~s~r~~~fI~~lR~d~~~~p~~~ivr~~~~s~~k~~f~~~lvEDrs~~~~SY~efLq~lk~qv~~  887 (887)
T KOG1985|consen  812 GKYTLPELDNEESDRVRRFIKKLRDDRTYFPNLYIVRGDDNSPLKAWFFSRLVEDRSENSPSYYEFLQHLKAQVSK  887 (887)
T ss_pred             ccccCcccccchhHHHHHHHHHhhcCCcccceEEEEecCCCchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcC
Confidence            8899999999999999999999998888888899999763  4566 89999999999999999999999999974

>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

Probab=99.56  E-value=6.2e-15  Score=120.72  Aligned_cols=73  Identities=27%  Similarity=0.402  Sum_probs=66.9

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHHhh-CCCccccEEeecC-Cch-HH-HHhhhhccCCCCCCCHHHHHHHHHHHHHh
Q 040148           12 RCTIGQQYDNPLSKKFNDVVNEMRRE-RCSYLRPRSCQEG-DLS-GM-FSSKMIEDKNPNGPSYFEFLVQIHREIQK   84 (88)
Q Consensus        12 ~~~~LP~l~t~~s~rlr~iI~~lr~~-~~~~~~l~vvrq~-d~~-e~-f~~~LVEDr~~~~~SY~efL~~ihr~I~~   84 (88)
                      ++.++|..+|++|.++|+||++||.. +...+|+++||+| |+. +. |+++|||||+.+.+||.|||+.+|.+|+.
T Consensus       785 ~k~~~p~~~n~~n~~v~~iI~~lrs~~~~~tl~lvlVR~~~d~s~~~~~~s~lVEDk~~n~~SY~~yL~~lh~ki~~  861 (861)
T COG5028         785 GKFTLPPTGNEFNERVRNIIGELRSVNDDSTLPLVLVRGGGDPSLRLWFFSTLVEDKTLNIPSYLDYLQILHEKIKS  861 (861)
T ss_pred             cccccCCcCCHHHHHHHHHHHHHHhhCCCCccceEEEecCCCcchhhheehheecccccCCccHHHHHHHHHHHhcC
Confidence            68999999999999999999999994 4578889999998 777 77 89999999999999999999999999974

>KOG3355 consensus Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]

Probab=83.09  E-value=0.63  Score=33.05  Aligned_cols=31  Identities=13%  Similarity=0.428  Sum_probs=22.5

Q ss_pred             HHhhhhccCCC---CCCCHHHHHHHHHHHHHhCCC
Q 040148           56 FSSKMIEDKNP---NGPSYFEFLVQIHREIQKKPS   87 (88)
Q Consensus        56 f~~~LVEDr~~---~~~SY~efL~~ihr~I~~~l~   87 (88)
                      |..+|-+ ..+   +...+.+|+||+|.+|..+++
T Consensus       120 l~K~l~~-nppq~~SRe~~~~W~C~vHN~VNekLg  153 (177)
T KOG3355|consen  120 LRKILRK-NPPQTSSREAFTQWLCHVHNKVNEKLG  153 (177)
T ss_pred             HHHHHHh-CCCCcchHHHHHHHHHHHHHHHHHHcC
Confidence            5444444 332   336899999999999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	88
3eh2_A	766	Crystal Structure Of The Human Copii-Coat Protein S		1e-06

>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 20  DNPLSKKFNDVVNEMRRERCSYLRPRSC-QEGDLSGMFSSKMIEDKN-PNGPSYFEFLVQ 77
           DNPLSKK   +++ +R +R  Y++     QE  +  +F   ++EDK+   G SY +FL  
Sbjct: 697 DNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCH 756
Query: 78  IHREIQK 84
           +H+EI++
Sbjct: 757 MHKEIRQ 763

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	88
3efo_B	770	SEC24 related gene family, member D; copii, coat p	4e-17
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	9e-17
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	5e-15
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-11
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	5e-11

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770

 Score = 73.4 bits (179), Expect = 4e-17
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 17  QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNG-PSYFEF 74
            +  NP S++   ++  ++++R   ++    ++ +   M F   ++EDK   G  SY +F
Sbjct: 698 PEVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGLYGGSSYVDF 757

Query: 75  LVQIHREIQKK 85
           L  +H+EI + 
Sbjct: 758 LCCVHKEICQL 768

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766

 Score = 72.2 bits (176), Expect = 9e-17
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 17  QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNG-PSYFEF 74
              DNPLSKK   +++ +R +R  Y++    ++ D   M F   ++EDK+ +G  SY +F
Sbjct: 694 PVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDF 753

Query: 75  LVQIHREIQKK 85
           L  +H+EI++ 
Sbjct: 754 LCHMHKEIRQL 764

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751

 Score = 67.7 bits (164), Expect = 5e-15
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 17  QQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGPSYFEFL 75
            + D   S++    +  +R  R         ++   +   F   +IED+     SY+EFL
Sbjct: 683 PELDTLSSERARSFITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAAFSYYEFL 742

Query: 76  VQIHREIQK 84
           + + ++I K
Sbjct: 743 LHVQQQICK 751

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 57.1 bits (137), Expect = 2e-11
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 17/85 (20%)

Query: 17  QQYDNPLSKKFNDVVNEMRRER--CSYLRPRSCQEGD---------------LSGMFSSK 59
              ++  +++  +++N++R      +Y      +                  L    SS 
Sbjct: 842 VVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASST 901

Query: 60  MIEDKNPNGPSYFEFLVQIHREIQK 84
           ++EDK  N  SY EFL  +   I K
Sbjct: 902 LVEDKILNNESYREFLQIMKARISK 926

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810

 Score = 55.8 bits (133), Expect = 5e-11
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 17/85 (20%)

Query: 17  QQYDNPLSKKFNDVVNEMRRER--CSYLRPRSCQEGD---------------LSGMFSSK 59
              ++  +++  +++N++R      +Y      +                  L    SS 
Sbjct: 726 VVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASST 785

Query: 60  MIEDKNPNGPSYFEFLVQIHREIQK 84
           ++EDK  N  SY EFL  +   I K
Sbjct: 786 LVEDKILNNESYREFLQIMKARISK 810

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
3efo_B	770	SEC24 related gene family, member D; copii, coat p	99.87
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	99.86
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	99.83
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	99.73
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	99.7
1m2o_A	768	SEC23, protein transport protein SEC23, SEC23P; zi	97.44
2nut_A	769	Protein transport protein SEC23A; human copii SEC2	85.27
3u5s_A	126	FAD-linked sulfhydryl oxidase ALR; flavin, liver,	83.3

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B

Probab=99.87  E-value=1.9e-22  Score=164.00  Aligned_cols=76  Identities=24%  Similarity=0.412  Sum_probs=71.1

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhccCC-CCCCCHHHHHHHHHHHHHhCCC
Q 040148           12 RCTIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKN-PNGPSYFEFLVQIHREIQKKPS   87 (88)
Q Consensus        12 ~~~~LP~l~t~~s~rlr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVEDr~-~~~~SY~efL~~ihr~I~~~l~   87 (88)
                      ++..||+++|++|+|||+||+++|+.++.|+||+||||||+.|. |.++|||||+ ++++||+||||||||+|+++|+
T Consensus       693 ~~~~lp~~~~~~s~~vr~ii~~lr~~r~~~~~l~ivr~~~~~e~~f~~~LvED~~~~~~~SY~dfL~~lh~~i~~~l~  770 (770)
T 3efo_B          693 DMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGLYGGSSYVDFLCCVHKEICQLLN  770 (770)
T ss_dssp             TCCSCCCCCSSHHHHHHHHHHHHHTTCSSCCEEEEEESTTSTTHHHHTTCTTSCC---CCCHHHHHHHHHHHHHHTCC
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHHhCCCCccEEEEeCCCChHHHHHHhCcccCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            56789999999999999999999999999999999999999999 9999999999 7889999999999999999985

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}

Probab=99.86  E-value=3.4e-22  Score=162.44  Aligned_cols=76  Identities=33%  Similarity=0.591  Sum_probs=72.1

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhccCCCC-CCCHHHHHHHHHHHHHhCCC
Q 040148           12 RCTIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPN-GPSYFEFLVQIHREIQKKPS   87 (88)
Q Consensus        12 ~~~~LP~l~t~~s~rlr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVEDr~~~-~~SY~efL~~ihr~I~~~l~   87 (88)
                      ++.+||+++|++|+|||+||+++|+.++.|+||+||||||+.|. |.++|||||+.+ ++||+|||+||||+|+++|+
T Consensus       689 ~~~~lp~~~~~~s~~vr~ii~~lr~~~~~~~~l~ivr~~~~~~~~f~~~LvED~~~~~~~SY~dfL~~lh~~i~~~l~  766 (766)
T 3eh2_A          689 GLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCHMHKEIRQLLS  766 (766)
T ss_dssp             TCCSCCCCSSHHHHHHHHHHHHHHTTSSSCCEEEEEESSSSTHHHHHTTCTTSCCTTTCCCHHHHHHHHHHHHHHHCC
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHHHhCcccCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            56789999999999999999999999999999999999999999 999999999975 79999999999999999875

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B

Probab=99.83  E-value=1e-20  Score=153.63  Aligned_cols=73  Identities=22%  Similarity=0.302  Sum_probs=69.5

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhccCCCCCCCHHHHHHHHHHHHHh
Q 040148           12 RCTIGQQYDNPLSKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNPNGPSYFEFLVQIHREIQK   84 (88)
Q Consensus        12 ~~~~LP~l~t~~s~rlr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVEDr~~~~~SY~efL~~ihr~I~~   84 (88)
                      ++..||+++|++|+|||+||+++|+.++.++.++||||+|+.|. |.++|||||+++++||+|||+||||+|++
T Consensus       678 ~~~~lp~~~t~~s~~vr~ii~~lr~~r~~~~~l~vvr~~~~~~~~f~~~LvED~~~~~~SY~~fL~~~h~~i~~  751 (751)
T 3eh1_A          678 KMTHLPELDTLSSERARSFITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAAFSYYEFLLHVQQQICK  751 (751)
T ss_dssp             SBCCCCCCSSHHHHHHHHHHHHHHHTSSSCCEEEEEESSSSSHHHHHTTCTTSCBTTBCCHHHHHHHHHHHHHC
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHhcCCCcceEEEEeCCCchHHHHHHhCcccCCCCCCCHHHHHHHHHHHhcC
Confidence            67889999999999999999999999988888999999999999 99999999999999999999999999975

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A

Probab=99.73  E-value=4.2e-18  Score=139.10  Aligned_cols=73  Identities=22%  Similarity=0.285  Sum_probs=65.2

Q ss_pred             cccccCCC-CCHHHHHHHHHHHHHHhhCC--CccccEEeecCC---c-----------hHH-HHhhhhccCCCCCCCHHH
Q 040148           12 RCTIGQQY-DNPLSKKFNDVVNEMRRERC--SYLRPRSCQEGD---L-----------SGM-FSSKMIEDKNPNGPSYFE   73 (88)
Q Consensus        12 ~~~~LP~l-~t~~s~rlr~iI~~lr~~~~--~~~~l~vvrq~d---~-----------~e~-f~~~LVEDr~~~~~SY~e   73 (88)
                      ++.+||++ +|++|++||+||+++|+.++  .+++++||||++   +           .|. |.++|||||+.+++||+|
T Consensus       720 ~~~~lp~~~~~~~~~~l~~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~~~~SY~~  799 (810)
T 1pcx_A          720 GKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILNNESYRE  799 (810)
T ss_dssp             EECCCCCCSSCHHHHHHHHHHHHHHCCSSCCCCCEEEEEECCCTTCCCCHHHHHHHHHHHHHHHTTCTTSCBTTBCCHHH
T ss_pred             ccccCCcCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhCeecCCCCCCCHHH
Confidence            56789999 99999999999999999986  578899999763   3           566 889999999999999999


Q ss_pred             HHHHHHHHHHh
Q 040148           74 FLVQIHREIQK   84 (88)
Q Consensus        74 fL~~ihr~I~~   84 (88)
                      ||++||++|++
T Consensus       800 fL~~lh~~i~~  810 (810)
T 1pcx_A          800 FLQIMKARISK  810 (810)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHhhC
Confidence            99999999974

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1

Probab=99.70  E-value=8.4e-18  Score=139.14  Aligned_cols=73  Identities=22%  Similarity=0.295  Sum_probs=53.4

Q ss_pred             cccccCCC-CCHHHHHHHHHHHHHHhhCC--CccccEEeecC---Cc-----------hHH-HHhhhhccCCCCCCCHHH
Q 040148           12 RCTIGQQY-DNPLSKKFNDVVNEMRRERC--SYLRPRSCQEG---DL-----------SGM-FSSKMIEDKNPNGPSYFE   73 (88)
Q Consensus        12 ~~~~LP~l-~t~~s~rlr~iI~~lr~~~~--~~~~l~vvrq~---d~-----------~e~-f~~~LVEDr~~~~~SY~e   73 (88)
                      ++.+||++ +|++|++||+||+++|+.++  .+++++||||+   ++           .|. |.++|||||+.+++||+|
T Consensus       836 ~~~~lp~l~~~~~s~~lr~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~~~~SY~d  915 (926)
T 1m2v_B          836 GKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILNNESYRE  915 (926)
T ss_dssp             ------------CHHHHHHHHHHTTCCSSCCCCCEEEEEC------------CCHHHHHHHHHHHTCTTSSCTTCCCHHH
T ss_pred             ccccCccCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhCeecCCCCCCCHHH
Confidence            56789999 99999999999999999986  57789999875   33           566 889999999999999999


Q ss_pred             HHHHHHHHHHh
Q 040148           74 FLVQIHREIQK   84 (88)
Q Consensus        74 fL~~ihr~I~~   84 (88)
                      ||++||++|++
T Consensus       916 fL~~lh~~i~~  926 (926)
T 1m2v_B          916 FLQIMKARISK  926 (926)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhhC
Confidence            99999999974

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*

Probab=97.44  E-value=0.0004  Score=56.57  Aligned_cols=54  Identities=17%  Similarity=0.190  Sum_probs=38.6

Q ss_pred             HHHHHhhCCCccccEEeecCCchHH-HHhhhhccCCC-------------CCCCHHHHHHHHHHHHHh
Q 040148           31 VNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKNP-------------NGPSYFEFLVQIHREIQK   84 (88)
Q Consensus        31 I~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVEDr~~-------------~~~SY~efL~~ihr~I~~   84 (88)
                      ++.+...|...+++++++||+..+. |.+.|++|.+.             +..||.+||+||||.|.+
T Consensus       698 a~~i~~~R~p~Pr~i~~~~~~sqarfl~s~L~p~~~~~~~~~~~~~~i~tdd~S~~~f~~~L~k~~v~  765 (768)
T 1m2o_A          698 AAELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQQVAVS  765 (768)
T ss_dssp             HHHHHHTCSSCCEEEEEETTCGGGHHHHTTSBCC-----------CCCCCCSCCHHHHHHHHHHHHCC
T ss_pred             HHHHHhcCCCCceEEEECCCCcHHHHHHHHcCCCccccccccCCccccccCCcCHHHHHHHHHHHHhc
Confidence            4556566655556778888866555 56999999872             248999999999999853

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A

Probab=85.27  E-value=2.5  Score=34.36  Aligned_cols=56  Identities=16%  Similarity=0.121  Sum_probs=38.2

Q ss_pred             HHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhc-----cCC-----------CCCCCHHHHHHHHHHHH
Q 040148           27 FNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIE-----DKN-----------PNGPSYFEFLVQIHREI   82 (88)
Q Consensus        27 lr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVE-----Dr~-----------~~~~SY~efL~~ihr~I   82 (88)
                      .+..++.+.+.|.+.+.+++++||..... |.+.|.-     |..           -+..||..|+.||+|.+
T Consensus       692 p~~~a~~i~~~R~p~Pr~i~~~~g~sqaRfl~sklnps~~~~~~~~~~~~~~~~~~tddvsl~~f~~~l~~~~  764 (769)
T 2nut_A          692 PVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLA  764 (769)
T ss_dssp             HHHHHHHHHHHSSSCCEEEEEETTCSTTHHHHHHCC----------------------CCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCeEEEEcCCCcHHHHHHHhcCCcccccCCCcCCCcCCccccccccCHHHHHHHHHHHh
Confidence            34577788888877778888888864434 4566543     110           12579999999999986

>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*

Probab=83.30  E-value=2.3  Score=27.28  Aligned_cols=62  Identities=8%  Similarity=0.233  Sum_probs=39.7

Q ss_pred             cCCCCCHH-HHHHHHHHHHHHhhCCCccccEEeecCCchHH-HHhhhhccCC--CCCCCHHHHHHHHHHHHHhCCC
Q 040148           16 GQQYDNPL-SKKFNDVVNEMRRERCSYLRPRSCQEGDLSGM-FSSKMIEDKN--PNGPSYFEFLVQIHREIQKKPS   87 (88)
Q Consensus        16 LP~l~t~~-s~rlr~iI~~lr~~~~~~~~l~vvrq~d~~e~-f~~~LVEDr~--~~~~SY~efL~~ihr~I~~~l~   87 (88)
                      .|+-.|+. -+.+.++|..+....++    -      .-.. |..+|-+-.-  .+..+..-||+.+|..|..++|
T Consensus        38 yP~~Pt~~~k~~~~~fi~~l~~~lPC----~------~C~~hf~~~l~~~pp~l~SR~~l~~Wl~~~HN~VN~rLg  103 (126)
T 3u5s_A           38 YPDLPTPEQQQDMAQFIHLFSKFYPX----E------EXAEDLRKRLARNHPDTRTRAAFTQWLXHLHNEVNRKLG  103 (126)
T ss_dssp             SCSSCCHHHHHHHHHHHHHHHHHCSS----H------HHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCc----h------HHHHHHHHHHHHCccccCCHHHHHHHHHHHHHHHHHHcC
Confidence            46555544 45567777777655432    1      1223 6666655433  3447899999999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	88
d1pd0a4	173	d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccha	9e-13
d1pd0a2	177	b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast	0.001

>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 173

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: C-terminal, gelsolin-like domain of Sec23/24
family: C-terminal, gelsolin-like domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.1 bits (140), Expect = 9e-13
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 17/85 (20%)

Query: 17  QQYDNPLSKKFNDVVNEMRRER--CSYLRPRSCQEGD---------------LSGMFSSK 59
              ++  +++  +++N++R      +Y      +                  L    SS 
Sbjct: 89  VVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASST 148

Query: 60  MIEDKNPNGPSYFEFLVQIHREIQK 84
           ++EDK  N  SY EFL  +   I K
Sbjct: 149 LVEDKILNNESYREFLQIMKARISK 173

>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: beta-sandwich domain of Sec23/24
family: beta-sandwich domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.6 bits (77), Expect = 0.001
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 2  DRGNCSPRYMRCTI 15
          +  N SP Y+R T+
Sbjct: 41 ELSNASPDYIRSTL 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1pd0a4	173	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	99.85
d1pd0a2	177	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	82.26

>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: C-terminal, gelsolin-like domain of Sec23/24
family: C-terminal, gelsolin-like domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=3e-22  Score=136.29  Aligned_cols=73  Identities=23%  Similarity=0.316  Sum_probs=64.2

Q ss_pred             cccccCCCC-CHHHHHHHHHHHHHHhhCC--CccccEEeecCCc--------------hHH-HHhhhhccCCCCCCCHHH
Q 040148           12 RCTIGQQYD-NPLSKKFNDVVNEMRRERC--SYLRPRSCQEGDL--------------SGM-FSSKMIEDKNPNGPSYFE   73 (88)
Q Consensus        12 ~~~~LP~l~-t~~s~rlr~iI~~lr~~~~--~~~~l~vvrq~d~--------------~e~-f~~~LVEDr~~~~~SY~e   73 (88)
                      ++..||+++ |++|+|+++||+++|..++  .|++++|||++|+              .|. |.++|||||+.+++||+|
T Consensus        83 ~~~~lp~~~~~~~s~rv~~ii~~lr~~~~~~~~~~l~vvr~~~~~~~~~~~~~~~~~~~e~~f~~~LvED~~~~~~SY~e  162 (173)
T d1pd0a4          83 GKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILNNESYRE  162 (173)
T ss_dssp             EECCCCCCTTCHHHHHHHHHHHHHTCCSSCCCCCCEEEEECC----------CHHHHHHHHHHHHTCTTSCBTTBCCHHH
T ss_pred             ccccCcccCCcHHHHHHHHHHHHHHhhcCCcccceEEEEecCCcccccccccccccchHHHHHHHhccccCCCCCcCHHH
Confidence            567899986 6999999999999999885  5899999999975              356 899999999999999999


Q ss_pred             HHHHHHHHHHh
Q 040148           74 FLVQIHREIQK   84 (88)
Q Consensus        74 fL~~ihr~I~~   84 (88)
                      |||+|||+|++
T Consensus       163 fL~~lh~~I~~  173 (173)
T d1pd0a4         163 FLQIMKARISK  173 (173)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHhcC
Confidence            99999999964

>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: beta-sandwich domain of Sec23/24
family: beta-sandwich domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.26  E-value=0.13  Score=33.69  Aligned_cols=18  Identities=33%  Similarity=0.521  Sum_probs=13.7

Q ss_pred             CCCCCCcCCcccc--ccCCC
Q 040148            2 DRGNCSPRYMRCT--IGQQY   19 (88)
Q Consensus         2 ~~~~~~~~~~~~~--~LP~l   19 (88)
                      |.|||||+|++.+  .+|..
T Consensus        41 d~~n~~p~~~r~T~~~iP~~   60 (177)
T d1pd0a2          41 ELSNASPDYIRSTLNAVPKN   60 (177)
T ss_dssp             GGGSCCTTTEEESBSSEESS
T ss_pred             ccCCCCccceeeeeccCCCC
Confidence            7899999999754  55643