Citrus Sinensis ID: 040169

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
VVPSRLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAIKGHLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWGAVSSFFIDDETQTCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGSTKNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQTS
cccccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHcccEEEcccccccccccccccccEEEEEcccEEEEcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHcc
cEEEEEccccccccccEEHEEEEEcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEcccEccccccccHHHHccccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHHcccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcEEEEEccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccEccccccHHHHHHcccccHHHHHHHHHHHHHHHHHccc
vvpsrlswsrnyaakdielkkspkvkdcsVIEESFLTGFMQqvknptcepdeygikylpVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAIKGHLKCRARvgrtaanedKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMklnwgavssffiddetqtckqplFIIAEDVEVEVAGSLILDRIcvstkfclvkppefeenCKGIMQDLAVLTGGWVVTAESNSLLARLklgsckevvildnemvilggsgsqADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVkvtggstknKRIVNALNAVKAAMeggiipenssqvcwqpfasfDLFVYFLSLAVIRVLMYpraryydldklqttslggKIGVQLLQQALkmpvctiasatgvdgSAVAEKLLeqdnpdvgydpargeyVDVIKLGIFDPMKLVIKELDDAIRLLVQTS
vvpsrlswsrnyaakdielkkspkvkdCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAIKGHlkcrarvgrtaanedkridVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWGAVSSFFIDDETQTCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVkvtggstknkrIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEqdnpdvgydpaRGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQTS
VVPSRLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAIKGHLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWGAVSSFFIDDETQTCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGSTKNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQTS
************************VKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAIKGHLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWGAVSSFFIDDETQTCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGSTKNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLV***
*VPSRLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAIKGHLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWGAVSSFFIDDETQTCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGSTKNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQTS
VVPSRLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAIKGHLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWGAVSSFFIDDETQTCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGSTKNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQTS
VVPSRLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAIKGHLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWGAVSSFFIDDETQTCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGSTKNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQTS
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VVPSRLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAIKGHLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWGAVSSFFIDDETQTCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGSTKNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query459 2.2.26 [Sep-21-2011]
P29185577 Chaperonin CPN60-1, mitoc N/A no 0.921 0.733 0.376 3e-84
Q05046575 Chaperonin CPN60-2, mitoc N/A no 0.921 0.735 0.366 3e-83
Q05045575 Chaperonin CPN60-1, mitoc N/A no 0.923 0.737 0.367 2e-82
Q43298576 Chaperonin CPN60-2, mitoc N/A no 0.921 0.734 0.370 3e-82
Q93ZM7572 Chaperonin CPN60-like 2, no no 0.943 0.756 0.345 1e-68
P19421552 60 kDa chaperonin OS=Coxi yes no 0.854 0.710 0.324 2e-56
A9KC15552 60 kDa chaperonin OS=Coxi yes no 0.854 0.710 0.324 2e-56
B6J2I0552 60 kDa chaperonin OS=Coxi yes no 0.854 0.710 0.324 2e-56
B6J4T4552 60 kDa chaperonin OS=Coxi yes no 0.854 0.710 0.324 2e-56
A9NA82552 60 kDa chaperonin OS=Coxi yes no 0.854 0.710 0.324 2e-56
>sp|P29185|CH61_MAIZE Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2 Back     alignment and function desciption
 Score =  312 bits (800), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 205/545 (37%), Positives = 285/545 (52%), Gaps = 122/545 (22%)

Query: 2   VPSRLSWSRNYAAKDIE---------------------LKKSPKVKDCSVIEESFLT--- 37
           V SRL+WSRNYAAKDI+                     +   PK ++  VIE+SF     
Sbjct: 24  VGSRLAWSRNYAAKDIKFGVEARALMLRGVEELADAVKVTMGPKGRNV-VIEQSFGAPKV 82

Query: 38  ----------------------GFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEA 75
                                   ++QV N T +    G     V+ +A+  EG K + A
Sbjct: 83  TKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDTAGDGTTCATVLTKAIFTEGCKSVAA 142

Query: 76  GVDAMDLKDEIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKV 125
           G++AMDL+  I MA +A+  +LK  AR          VG  +AN ++ I  L+ + MEKV
Sbjct: 143 GMNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKV 202

Query: 126 GKEGLFIIYDEEKKKNELKFLRGMKLNWGAVSSFFI-DDETQTC---------------- 168
           GKEG+  I D     NEL+ + GMKL+ G +S +FI + +TQ C                
Sbjct: 203 GKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFITNSKTQKCELEDPLILIHDKKVTN 262

Query: 169 --------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIM 214
                         ++PL I+AEDVE E  G+LI++++    K C VK P F EN K  +
Sbjct: 263 MHAVVKVLEMALKKQKPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENRKANL 322

Query: 215 QDLAVLTGGWVVTAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQL 271
           QDLA+LTGG V+T E    L   +   LG+CK+V +  ++ VIL G+G +  IE+R EQ+
Sbjct: 323 QDLAILTGGEVITEELGMNLENFEPHMLGTCKKVTVSKDDTVILDGAGDKKSIEERAEQI 382

Query: 272 RSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGS-----TKNKRIVNALNAVKAAMEG 326
           RSAI+ STSDY+ + L+ERL  LS G  ++K+ G S      K  R+ +ALNA KAA+E 
Sbjct: 383 RSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEE 442

Query: 327 GIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLL 386
           GI+P     + +                             +LDKLQT +   KIGVQ++
Sbjct: 443 GIVPGGGVALLYAS--------------------------KELDKLQTANFDQKIGVQII 476

Query: 387 QQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKLVIK 446
           Q ALK PV TIAS  GV+G+ V  KLLEQ+N D+GYD A+GEYVD++K GI DP+K++  
Sbjct: 477 QNALKTPVHTIASNAGVEGAVVVGKLLEQENTDLGYDAAKGEYVDMVKTGIIDPLKVIRT 536

Query: 447 ELDDA 451
            L DA
Sbjct: 537 ALVDA 541
Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.
Zea mays (taxid: 4577)
>sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1 Back     alignment and function description
>sp|Q05045|CH61_CUCMA Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1 Back     alignment and function description
>sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1 Back     alignment and function description
>sp|Q93ZM7|CH60C_ARATH Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2 Back     alignment and function description
>sp|P19421|CH60_COXBU 60 kDa chaperonin OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=groL PE=1 SV=1 Back     alignment and function description
>sp|A9KC15|CH60_COXBN 60 kDa chaperonin OS=Coxiella burnetii (strain Dugway 5J108-111) GN=groL PE=3 SV=1 Back     alignment and function description
>sp|B6J2I0|CH60_COXB2 60 kDa chaperonin OS=Coxiella burnetii (strain CbuG_Q212) GN=groL PE=3 SV=1 Back     alignment and function description
>sp|B6J4T4|CH60_COXB1 60 kDa chaperonin OS=Coxiella burnetii (strain CbuK_Q154) GN=groL PE=3 SV=1 Back     alignment and function description
>sp|A9NA82|CH60_COXBR 60 kDa chaperonin OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=groL PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query459
224057686 574 predicted protein [Populus trichocarpa] 0.921 0.736 0.390 7e-88
255554262 574 chaperonin-60kD, ch60, putative [Ricinus 0.921 0.736 0.387 7e-84
242039457 577 hypothetical protein SORBIDRAFT_01g02001 0.921 0.733 0.381 7e-83
225433375 575 PREDICTED: chaperonin CPN60-2, mitochond 0.921 0.735 0.374 7e-83
224069951 575 predicted protein [Populus trichocarpa] 0.923 0.737 0.384 7e-83
356575182 575 PREDICTED: chaperonin CPN60-2, mitochond 0.921 0.735 0.374 8e-83
357442731 574 Chaperonin CPN60-like protein [Medicago 0.921 0.736 0.377 1e-82
2506275 577 RecName: Full=Chaperonin CPN60-1, mitoch 0.921 0.733 0.376 2e-82
162458253 577 chaperonin CPN60-1, mitochondrial precur 0.921 0.733 0.376 2e-82
309557 577 chaperonin 60 [Zea mays] 0.921 0.733 0.376 3e-82
>gi|224057686|ref|XP_002299295.1| predicted protein [Populus trichocarpa] gi|222846553|gb|EEE84100.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  330 bits (847), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 213/545 (39%), Positives = 290/545 (53%), Gaps = 122/545 (22%)

Query: 2   VPSRLSWSRNYAAKDI---------------------ELKKSPKVKDCSVIEESFLT--- 37
           + SRLSWSRNYAAKDI                     ++   PK ++  VIE+S+     
Sbjct: 22  IGSRLSWSRNYAAKDIRFGVEARAGMLKGVEELADAVKVTMGPKGRNV-VIEQSYGAPKV 80

Query: 38  ----------------------GFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEA 75
                                   ++QV N T +    G     V+ QA+  EG K + A
Sbjct: 81  TKDGVTVAKSIEFKDKVKNVGASLVKQVANATNDAAGDGTTCATVLTQAIFTEGCKSVAA 140

Query: 76  GVDAMDLKDEIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKV 125
           G++AMDL+  I MA E++  +LK RAR          VG  +AN ++ I  L+ + MEKV
Sbjct: 141 GMNAMDLRRGISMAVESVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKV 200

Query: 126 GKEGLFIIYDEEKKKNELKFLRGMKLNWGAVSSFFIDDE-TQTC---------------- 168
           GKEG+  I D +   NEL+ + GMKL+ G +S +FI D+ TQ C                
Sbjct: 201 GKEGVITIQDGKTLSNELEVVEGMKLDRGYISPYFITDQKTQKCELDDPLILIHDKKVSS 260

Query: 169 --------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIM 214
                         ++PL I+AEDVE E   +LIL+++    K C +K P F EN K I+
Sbjct: 261 LHAVVKVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCSIKAPGFGENRKAIL 320

Query: 215 QDLAVLTGGWVVTAESNSLLARLKL---GSCKEVVILDNEMVILGGSGSQADIEKRCEQL 271
           QDLA LTGG V+T E    L  + L   GSCK+V +  ++ VIL G+G +  IE+RCEQ+
Sbjct: 321 QDLAALTGGEVITEELGLNLENVDLDMLGSCKKVTVSKDDTVILDGAGDKKSIEERCEQI 380

Query: 272 RSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGG-----STKNKRIVNALNAVKAAMEG 326
           RSAI +STSDY+ + L+ERL  LS G  ++K+ G      S K  R+ +ALNA KAA+E 
Sbjct: 381 RSAIDSSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVSEKKDRVTDALNATKAAVEE 440

Query: 327 GIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLL 386
           GI+P   +                        L+Y      +LDKLQT +   KIGVQ++
Sbjct: 441 GIVPGGGA-----------------------ALLYA---SKELDKLQTANFDQKIGVQII 474

Query: 387 QQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKLVIK 446
           Q ALK PV TIAS  GV+G+ V  KLLEQDNPD+GYD A+GEYVD++K GI DP+K++  
Sbjct: 475 QNALKTPVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRT 534

Query: 447 ELDDA 451
            L DA
Sbjct: 535 ALVDA 539

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255554262|ref|XP_002518171.1| chaperonin-60kD, ch60, putative [Ricinus communis] gi|223542767|gb|EEF44304.1| chaperonin-60kD, ch60, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|242039457|ref|XP_002467123.1| hypothetical protein SORBIDRAFT_01g020010 [Sorghum bicolor] gi|241920977|gb|EER94121.1| hypothetical protein SORBIDRAFT_01g020010 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|225433375|ref|XP_002285608.1| PREDICTED: chaperonin CPN60-2, mitochondrial isoform 1 [Vitis vinifera] gi|297741894|emb|CBI33329.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224069951|ref|XP_002303091.1| predicted protein [Populus trichocarpa] gi|222844817|gb|EEE82364.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356575182|ref|XP_003555721.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|357442731|ref|XP_003591643.1| Chaperonin CPN60-like protein [Medicago truncatula] gi|92882357|gb|ABE86688.1| GroEL-like chaperone, ATPase [Medicago truncatula] gi|355480691|gb|AES61894.1| Chaperonin CPN60-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|2506275|sp|P29185.2|CH61_MAIZE RecName: Full=Chaperonin CPN60-1, mitochondrial; AltName: Full=HSP60-1; Flags: Precursor Back     alignment and taxonomy information
>gi|162458253|ref|NP_001105716.1| chaperonin CPN60-1, mitochondrial precursor [Zea mays] gi|22248|emb|CAA78100.1| mitochondrial chaperonin-60 [Zea mays] Back     alignment and taxonomy information
>gi|309557|gb|AAA33450.1| chaperonin 60 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query459
TAIR|locus:2076081577 HSP60 "heat shock protein 60" 0.352 0.280 0.458 1.2e-85
TAIR|locus:2046590585 HSP60-2 "heat shock protein 60 0.352 0.276 0.441 6.8e-81
FB|FBgn0031728576 Hsp60C "Hsp60C" [Drosophila me 0.352 0.281 0.426 1.1e-52
UNIPROTKB|Q5ZL72573 HSPD1 "60 kDa heat shock prote 0.352 0.282 0.385 7.5e-50
ZFIN|ZDB-GENE-021206-1575 hspd1 "heat shock 60kD protein 0.352 0.281 0.385 2.5e-49
MGI|MGI:96242573 Hspd1 "heat shock protein 1 (c 0.350 0.280 0.388 2.6e-49
RGD|621314573 Hspd1 "heat shock protein 1 (c 0.350 0.280 0.388 2.6e-49
UNIPROTKB|P63039573 Hspd1 "60 kDa heat shock prote 0.350 0.280 0.388 2.6e-49
UNIPROTKB|F1SMZ7575 HSPD1 "Uncharacterized protein 0.350 0.28 0.388 6.9e-49
UNIPROTKB|P10809573 HSPD1 "60 kDa heat shock prote 0.350 0.280 0.388 1.1e-48
TAIR|locus:2076081 HSP60 "heat shock protein 60" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 362 (132.5 bits), Expect = 1.2e-85, Sum P(4) = 1.2e-85
 Identities = 78/170 (45%), Positives = 112/170 (65%)

Query:   169 KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTA 228
             ++PL I++EDVE +   +LIL+++    K C +K P F EN K  +QDLA LTGG V+T 
Sbjct:   274 QRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKANLQDLAALTGGEVITD 333

Query:   229 ESNSLLARLKL---GSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIK 285
             E    L ++ L   G+CK+V +  ++ VIL G+G +  IE+RCEQ+RSAI+ STSDY+ +
Sbjct:   334 ELGMNLEKVDLSMLGTCKKVTVSKDDTVILDGAGDKKGIEERCEQIRSAIELSTSDYDKE 393

Query:   286 LLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIP 330
              L+ERL  LS G  ++K+ G S      K  R+ +ALNA KAA+E GI+P
Sbjct:   394 KLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGILP 443
GO:0005524 "ATP binding" evidence=IEA;IDA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006457 "protein folding" evidence=IEA;RCA
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051131 "chaperone-mediated protein complex assembly" evidence=TAS
GO:0007005 "mitochondrion organization" evidence=TAS
GO:0009408 "response to heat" evidence=IEP;RCA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005759 "mitochondrial matrix" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA;IDA
GO:0005507 "copper ion binding" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2046590 HSP60-2 "heat shock protein 60-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0031728 Hsp60C "Hsp60C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZL72 HSPD1 "60 kDa heat shock protein, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-021206-1 hspd1 "heat shock 60kD protein 1 (chaperonin)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:96242 Hspd1 "heat shock protein 1 (chaperonin)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621314 Hspd1 "heat shock protein 1 (chaperonin)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P63039 Hspd1 "60 kDa heat shock protein, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SMZ7 HSPD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_I0166
SubName- Full=Putative uncharacterized protein; (575 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIV.2088.1
hypothetical protein (955 aa)
      • 0.619
estExt_fgenesh4_pm.C_LG_I0780
hypothetical protein (97 aa)
•  •  • 0.602
estExt_Genewise1_v1.C_LG_VIII0130
hypothetical protein (97 aa)
•     • 0.577
estExt_Genewise1_v1.C_LG_III0383
hypothetical protein (681 aa)
  •   • 0.553
estExt_fgenesh4_pg.C_LG_X1007
hypothetical protein (97 aa)
•     • 0.551
estExt_fgenesh4_pm.C_LG_IX0449
SubName- Full=Putative uncharacterized protein; (97 aa)
•     • 0.537
estExt_Genewise1_v1.C_LG_XVIII0619
hypothetical protein (258 aa)
• ••  • 0.495
estExt_Genewise1_v1.C_280199
SubName- Full=Putative uncharacterized protein; (256 aa)
• ••  • 0.487
grail3.3134000101
Predicted protein (100 aa)
      • 0.475
eugene3.29520003
annotation not avaliable (742 aa)
      • 0.441

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 2e-89
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 4e-79
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 6e-77
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 1e-67
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 7e-66
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 1e-65
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 4e-61
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 4e-60
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 4e-54
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 2e-45
CHL00093529 CHL00093, groEL, chaperonin GroEL 6e-43
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 3e-33
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 4e-18
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-12
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 4e-04
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information 
 Score =  281 bits (722), Expect = 2e-89
 Identities = 151/443 (34%), Positives = 232/443 (52%), Gaps = 78/443 (17%)

Query: 60  VMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAIKGHLKCRAR----------VGRTAAN 109
           V+ +A+  EG K + AG + MDLK  I  A EA+   LK  ++          V   +AN
Sbjct: 91  VLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISAN 150

Query: 110 EDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWGAVSSFFI-DDETQTC 168
            D+ I  L+ E MEKVGK+G+  + + +  + EL+ + GM+ + G +S +F+ D E    
Sbjct: 151 GDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEV 210

Query: 169 ------------------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKF 198
                                          +PL IIAEDVE E   +L+++++    K 
Sbjct: 211 ELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKV 270

Query: 199 CLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLK---LGSCKEVVILDNEMVIL 255
           C VK P F +  K +++D+A+LTGG V++ E    L  +    LG  K+VV+  ++  I+
Sbjct: 271 CAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTII 330

Query: 256 GGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST------K 309
           GG+G +A I+ R  Q+R  I+ +TSDY+ + L+ERL  LS G  ++KV GG+T      K
Sbjct: 331 GGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKV-GGATEVELKEK 389

Query: 310 NKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDL 369
             R+ +ALNA +AA+E GI+P                       A++R           L
Sbjct: 390 KDRVEDALNATRAAVEEGIVPGGGV-------------------ALLRASPA-------L 423

Query: 370 DKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEY 429
           DKL+  +   K+G++++++AL+ P+  IA   GVDGS V EK+LE  +   GYD A GEY
Sbjct: 424 DKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEY 482

Query: 430 VDVIKLGIFDPMKLVIKELDDAI 452
           VD+I+ GI DP K+V   L +A 
Sbjct: 483 VDMIEAGIIDPTKVVRSALQNAA 505

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 459
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.84
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.74
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 97.14
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 91.05
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=9.2e-89  Score=732.38  Aligned_cols=419  Identities=33%  Similarity=0.557  Sum_probs=396.0

Q ss_pred             cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169            5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD   84 (459)
Q Consensus         5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~   84 (459)
                      ++||||+||+|+|+++||         ++||+|+|++++|++||+++||||||+++||++||++|.+|+++|+||+.|++
T Consensus        48 ~iTnDG~TIlk~i~~~~~---------~~~p~akll~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~  118 (545)
T PRK12852         48 RITKDGVTVAKEIELEDK---------FENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKR  118 (545)
T ss_pred             eEeccHHHHHHHccCCCc---------ccChHHHHHHHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            479999999999999999         99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh----------heeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEecc
Q 040169           85 EIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWG  154 (459)
Q Consensus        85 G~~~a~~~~l~~L~~~s~----------vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g  154 (459)
                      ||++|.+.++++|+++++          +|++|++.++.+++++++|+.+++.++.|.++.|++..+++++++|+.|++|
T Consensus       119 G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g  198 (545)
T PRK12852        119 GIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRG  198 (545)
T ss_pred             HHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCC
Confidence            999999999999999885          7788888899999999999999998889999998887679999999999999


Q ss_pred             ccccccccc-ccccc------------------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecC
Q 040169          155 AVSSFFIDD-ETQTC------------------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKP  203 (459)
Q Consensus       155 ~~~~~~~~~-~~~~~------------------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~  203 (459)
                      |.+|+|.++ +++..                              +.||+|++++|++++++.|+.|++++.++|++||+
T Consensus       199 ~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~  278 (545)
T PRK12852        199 YLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKA  278 (545)
T ss_pred             ccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEec
Confidence            999998776 44322                              89999999999999999999999999999999999


Q ss_pred             CCccccccchHHHHHHHhCCeEeeecccc---ccccccceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhcCC
Q 040169          204 PEFEENCKGIMQDLAVLTGGWVVTAESNS---LLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTS  280 (459)
Q Consensus       204 ~~~~~~r~~~ledla~~tG~~v~~~~~~~---~l~~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~  280 (459)
                      |+|+++|+++++|||++|||+++++..+.   ++++++||+|+.|+++++++++++++++++.+..|+++|+.+++++.+
T Consensus       279 ~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~  358 (545)
T PRK12852        279 PGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTS  358 (545)
T ss_pred             CCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999953222   234778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCCcccCCCcccccCcccchhHHHHHHHHHH
Q 040169          281 DYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAV  355 (459)
Q Consensus       281 ~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~gvVpGGG~~e~~~~~~~~~~~~~~~~~~~  355 (459)
                      .|++++|+|||+||+|+++||+|||+|+     ++|+++||+|++|+++++|+|||||++|                   
T Consensus       359 ~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e-------------------  419 (545)
T PRK12852        359 DYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVAL-------------------  419 (545)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHH-------------------
Confidence            9999999999999999999999999998     9999999999999999999999999999                   


Q ss_pred             hhhhccccccchhhHHhhcCCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCCCCeeEecCCCcccccccc
Q 040169          356 IRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKL  435 (459)
Q Consensus       356 ~~~~~~~s~~~~~L~~~~~~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~~~~Gid~~~g~~~d~~~~  435 (459)
                          ++++   ..|++++..++++|+|+++|++||+.||++||+|||+|+.+++++|++.+++++|||+.+|+++||++.
T Consensus       420 ----~~~s---~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~  492 (545)
T PRK12852        420 ----LRAK---KAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAK  492 (545)
T ss_pred             ----HHHH---HHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhC
Confidence                9999   999998766889999999999999999999999999999999999998767889999999999999999


Q ss_pred             CcccchHHHHHHHHHHHHHHhhc
Q 040169          436 GIFDPMKLVIKELDDAIRLLVQT  458 (459)
Q Consensus       436 gI~DP~~vk~~al~~A~~~a~~~  458 (459)
                      |||||+.||.++|++|+++|+++
T Consensus       493 GI~Dp~~vk~~al~~A~e~a~~i  515 (545)
T PRK12852        493 GIIDPAKVVRTALQDAASVAGLL  515 (545)
T ss_pred             cCCcChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875

>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 3e-45
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 3e-43
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 5e-42
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 6e-42
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 6e-42
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 7e-42
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 8e-42
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 8e-42
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 8e-42
1ss8_A524 Groel Length = 524 9e-42
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 1e-41
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-41
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-41
1oel_A547 Conformational Variability In The Refined Structure 1e-41
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 2e-41
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 4e-41
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 2e-34
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 3e-34
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 3e-18
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 3e-18
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 3e-18
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 4e-18
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 6e-18
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 2e-16
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 1e-10
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 2e-08
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 4e-08
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure 
Iteration: 1

 Score =  179 bits (454), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/469 (27%), Positives = 227/469 (48%), Gaps = 77/469 (16%)
Query: 33  ESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEA 92
           E+     +++V + T +    G     V+ QA+  EG K + AG++ MDLK  I +A   
Sbjct: 67  ENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAK 126
Query: 93  IKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNE 142
           +   +K  AR          VG  +AN +  I   + E M++VG EG+  + + +  + E
Sbjct: 127 VVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETE 186
Query: 143 LKFLRGMKLNWGAVSSFFIDDETQ-------------------------------TCKQP 171
           ++ + GM+ + G +S +F+ +  +                                 ++P
Sbjct: 187 VEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKP 246
Query: 172 LFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESN 231
           L I+AEDVE E   +L+++++    K   VK P F +  K ++QD+A+LTGG V++ +  
Sbjct: 247 LLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLG 306
Query: 232 SLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLE 288
             L  +    LG  K+V I  +   I+ G+G +A+IE R  Q+R  I+ +TSDY+ + L+
Sbjct: 307 MKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQ 366
Query: 289 ERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFA 342
           ER+  L+ G  +++V GG T      +  R+ +ALNA +AA++ GI+             
Sbjct: 367 ERVAKLAGGVAVIRV-GGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGG--------- 416
Query: 343 SFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATG 402
                          V +   A+   L+ L   +     G+ ++++AL+ P+  IA   G
Sbjct: 417 ---------------VALVQGAKV--LEGLSGANSDQDAGIAIIRRALEAPMRQIAENAG 459
Query: 403 VDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDA 451
           VDG+ VA K+ E  +   G++    EY D+ K G+ DP K+V   L+DA
Sbjct: 460 VDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDA 508
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 4e-70
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 3e-67
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 2e-64
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 5e-64
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 2e-26
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 4e-26
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
 Score =  230 bits (590), Expect = 4e-70
 Identities = 130/444 (29%), Positives = 218/444 (49%), Gaps = 81/444 (18%)

Query: 60  VMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAIKGHLKCRAR----------VGRTAAN 109
           V+ QA+  EG K + AG++ MDLK  I +A   +   +K  AR          VG  +AN
Sbjct: 94  VLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISAN 153

Query: 110 EDKRIDVLLTEVMEKVGKEGLFIIYDEEKK--KNELKFLRGMKLNWGAVSSFFI-DDETQ 166
            +  I   + E M++VG EG  +I  EE K  + E++ + GM+ + G +S +F+ + +  
Sbjct: 154 GESFIGQQIAEAMQRVGNEG--VITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKM 211

Query: 167 TCK------------------------------QPLFIIAEDVEVEVAGSLILDRICVST 196
             +                              +PL I+AEDVE E   +L+++++    
Sbjct: 212 IAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGL 271

Query: 197 KFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLK---LGSCKEVVILDNEMV 253
           K   VK P F +  K ++QD+A+LTGG V++ +    L  +    LG  K+V I  +   
Sbjct: 272 KIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTT 331

Query: 254 ILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST----- 308
           I+ G+G +A+IE R  Q+R  I+ +TSDY+ + L+ER+  L+ G  +++V GG T     
Sbjct: 332 IVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRV-GGMTEIEVK 390

Query: 309 -KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYY 367
            +  R+ +ALNA +AA++ GI+                        A+++          
Sbjct: 391 ERKDRVDDALNATRAAVQEGIVVGGGV-------------------ALVQGAK------- 424

Query: 368 DLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARG 427
            L+ L   +     G+ ++++AL+ P+  IA   GVDG+ VA K+ E  +   G++    
Sbjct: 425 VLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTE 484

Query: 428 EYVDVIKLGIFDPMKLVIKELDDA 451
           EY D+ K G+ DP K+V   L+DA
Sbjct: 485 EYGDMFKFGVIDPAKVVRTALEDA 508
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.94
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.55
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.28
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
Probab=100.00  E-value=1.7e-95  Score=780.51  Aligned_cols=416  Identities=31%  Similarity=0.463  Sum_probs=373.9

Q ss_pred             cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169            5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD   84 (459)
Q Consensus         5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~   84 (459)
                      ++||||+||||+|++.||         ++|+||||++++|++||+++||||||++|||++||++|.+++++|+||+.|++
T Consensus        47 ~ITnDG~TIlk~i~v~hp---------~~n~gAkll~e~a~~qd~e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~  117 (546)
T 3rtk_A           47 TITNDGVSIAKEIELEDP---------YEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKR  117 (546)
T ss_dssp             --------------CCCH---------HHHHHHHHHHHHHTSCC-------CHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             EEECcHHHHHHHccCCCh---------hhhHHHHHHHHHHHhhhhhhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            689999999999999999         99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh----------heeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEecc
Q 040169           85 EIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWG  154 (459)
Q Consensus        85 G~~~a~~~~l~~L~~~s~----------vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g  154 (459)
                      ||++|.+.++++|+++++          +|++|++ ++.+++++++|+.+++.+|.|.++.+++..+++++++||+||++
T Consensus       118 G~~~A~~~a~e~L~~~s~~v~~~e~L~~vA~iS~~-~~~i~~liadAv~~V~~dgvI~Ve~~~~~~~ds~lveGm~fdkg  196 (546)
T 3rtk_A          118 GIEKAVEKVTETLLKGAKEVETKEQIAATAAISAG-DQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKG  196 (546)
T ss_dssp             HHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHT-CHHHHHHHHHHHHHSCTTSEEEEECCSSSSCEEEEECEEEESCC
T ss_pred             HHHHHHHHHHHHHHHhcccCCChHHHHhHeEEeCC-chHHHHHHHHHHHHhccCCceEEEecCCcccceEEeeeEEEcCC
Confidence            999999999999999875          7788887 88999999999999999999999988777789999999999999


Q ss_pred             ccccccccc-cccc-------c-----------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecC
Q 040169          155 AVSSFFIDD-ETQT-------C-----------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKP  203 (459)
Q Consensus       155 ~~~~~~~~~-~~~~-------~-----------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~  203 (459)
                      |.||||+++ +++.       +                       ++||+|++++|+++++++|+.|+++|++++++||.
T Consensus       197 ~~sp~~vt~~e~m~~~len~kIll~d~kIs~~~~l~~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~  276 (546)
T 3rtk_A          197 YISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKA  276 (546)
T ss_dssp             BSSGGGCSBTTTTBEEEESCEEEEBSSEECCSTTTHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred             ccCcccccCcccCeeEecccEEEEECCccCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEecc
Confidence            999999765 4332       1                       78999999999999999999999999999999999


Q ss_pred             CCccccccchHHHHHHHhCCeEeeecccc---ccccccceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhcCC
Q 040169          204 PEFEENCKGIMQDLAVLTGGWVVTAESNS---LLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTS  280 (459)
Q Consensus       204 ~~~~~~r~~~ledla~~tG~~v~~~~~~~---~l~~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~  280 (459)
                      |+|+++|+.+|+|||++|||++++++.++   ++++++||+|+.|++++++++|+++|++++++..|+++|+++++.+++
T Consensus       277 ~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s  356 (546)
T 3rtk_A          277 PGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDS  356 (546)
T ss_dssp             SSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEEECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSC
T ss_pred             ccccccchhhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEEEcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999964333   245889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCCcccCCCcccccCcccchhHHHHHHHHHH
Q 040169          281 DYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAV  355 (459)
Q Consensus       281 ~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~gvVpGGG~~e~~~~~~~~~~~~~~~~~~~  355 (459)
                      +||+++|+|||++|+|++|||+|||+|+     ++|+++||||++|+++++|+|||||++|                   
T Consensus       357 ~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~giVpGGGa~e-------------------  417 (546)
T 3rtk_A          357 DYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTL-------------------  417 (546)
T ss_dssp             HHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHCEEETTTHHH-------------------
T ss_pred             hhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccCCcHHH-------------------
Confidence            9999999999999999999999999998     9999999999999999999999999999                   


Q ss_pred             hhhhccccccchhhHHhhcCCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCCCCeeEecCCCcccccccc
Q 040169          356 IRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKL  435 (459)
Q Consensus       356 ~~~~~~~s~~~~~L~~~~~~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~~~~Gid~~~g~~~d~~~~  435 (459)
                          ++++   ..|++|+ .++++|+|+++|++||+.||++||+|||+|+.+++++|++. ..++|||+.+|+|.||++.
T Consensus       418 ----~~~s---~~L~~~~-~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~-~~~~G~d~~~g~~~Dm~~~  488 (546)
T 3rtk_A          418 ----LQAA---PTLDELK-LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNL-PAGHGLNAQTGVYEDLLAA  488 (546)
T ss_dssp             ----HTTG---GGSTTSC-CCTTHHHHHHHHHHHTTHHHHHHHTTTTCCHHHHHHHHHHS-CTTEECCSSSCCCEETTTT
T ss_pred             ----HHHH---HHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh-cCCEeEcCCCCcEeeHHHc
Confidence                9999   9999987 78999999999999999999999999999999999999986 3469999999999999999


Q ss_pred             CcccchHHHHHHHHHHHHHHhhc
Q 040169          436 GIFDPMKLVIKELDDAIRLLVQT  458 (459)
Q Consensus       436 gI~DP~~vk~~al~~A~~~a~~~  458 (459)
                      |||||++||+++|++|+++|+++
T Consensus       489 gI~dp~~vk~~al~~A~e~A~~i  511 (546)
T 3rtk_A          489 GVADPVKVTRSALQNAASIAGLF  511 (546)
T ss_dssp             TCEEEHHHHHHHHHHHHHHHHHH
T ss_pred             CCEecHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 459
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 2e-30
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 1e-28
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 2e-28
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 2e-16
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 3e-07
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 5e-07
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 3e-06
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 6e-05
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 8e-05
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 1e-04
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 1e-04
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 5e-04
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 5e-04
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

 Score =  114 bits (287), Expect = 2e-30
 Identities = 59/190 (31%), Positives = 89/190 (46%), Gaps = 34/190 (17%)

Query: 142 ELKFLRGMKLNWGAVSSFFI-DDETQTC------------------------------KQ 170
             +   GM+ + G +S +FI   ET                                  +
Sbjct: 3   VPRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGK 62

Query: 171 PLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAES 230
           PL IIAEDVE E   +L+++ +    K   VK P F +  K ++QD+A LTGG V++ E 
Sbjct: 63  PLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEI 122

Query: 231 NSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLL 287
              L +     LG  K VVI  +   I+ G G +A I+ R  Q+R  I+ +TSDY+ + L
Sbjct: 123 GMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKL 182

Query: 288 EERLLNLSCG 297
           +ER+  L+ G
Sbjct: 183 QERVAKLAGG 192
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 99.98
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.97
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.96
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.94
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.94
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.91
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.91
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.32
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.25
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.22
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.21
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.0
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 98.81
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 98.75
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 98.74
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 96.14
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 96.04
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 95.19
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 94.87
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 94.31
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 81.46
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=1.6e-37  Score=299.52  Aligned_cols=193  Identities=13%  Similarity=0.171  Sum_probs=177.2

Q ss_pred             cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169            5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD   84 (459)
Q Consensus         5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~   84 (459)
                      .+||||+||+|++++.||             +|+++++++++|++++||||||+++|+++||+++.+++..|+||..|++
T Consensus        39 ~iT~Dg~ti~~~~~~~~~-------------~a~~~~~~~~~~~~~~GDGttt~~vl~~~ll~~~~~~i~~G~~p~~I~~  105 (243)
T d1a6db1          39 VITNDGVTILKEMDVEHP-------------AAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISE  105 (243)
T ss_dssp             EEECCHHHHHHHSCCCSH-------------HHHHHHHHHTCTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             EEecchhhHhhhhhccch-------------HHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            579999999999999999             9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhheeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEecccccccccccc
Q 040169           85 EIYMAFEAIKGHLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWGAVSSFFIDDE  164 (459)
Q Consensus        85 G~~~a~~~~l~~L~~~s~vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~  164 (459)
                      ||+.|.+.+++.|++++.                                                              
T Consensus       106 g~~~a~~~~~~~L~~~a~--------------------------------------------------------------  123 (243)
T d1a6db1         106 GYRMASEEAKRVIDEIST--------------------------------------------------------------  123 (243)
T ss_dssp             HHHHHHHHHHHHHHHHCE--------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhhcc--------------------------------------------------------------
Confidence            999999999987755310                                                              


Q ss_pred             ccccCCCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeE
Q 040169          165 TQTCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKE  244 (459)
Q Consensus       165 ~~~~~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~  244 (459)
                                                                                          +           
T Consensus       124 --------------------------------------------------------------------~-----------  124 (243)
T d1a6db1         124 --------------------------------------------------------------------K-----------  124 (243)
T ss_dssp             --------------------------------------------------------------------E-----------
T ss_pred             --------------------------------------------------------------------c-----------
Confidence                                                                                0           


Q ss_pred             EEEecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCccchhhhhHHHHHHHHHH
Q 040169          245 VVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGSTKNKRIVNALNAVKAAM  324 (459)
Q Consensus       245 v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~~~r~i~DAl~~~k~a~  324 (459)
                                                                                                      
T Consensus       125 --------------------------------------------------------------------------------  124 (243)
T d1a6db1         125 --------------------------------------------------------------------------------  124 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hCCcccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHHhcCC
Q 040169          325 EGGIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIASATGV  403 (459)
Q Consensus       325 ~~gvVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~NaG~  403 (459)
                       -.++||||++|                       ++++   ..|.+++. .+|++|+++++|++||+.||++||+|||+
T Consensus       125 -v~~~~ggGa~e-----------------------~~~a---~~l~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~  177 (243)
T d1a6db1         125 -IAYAAGGGATA-----------------------AEIA---FRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGL  177 (243)
T ss_dssp             -CEEEETTTHHH-----------------------HHHH---HHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTC
T ss_pred             -cccccCCCchh-----------------------HHHH---HHHhhhhhccCCHHHHHHHHHHHHhhccCccccccCCC
Confidence             00335789999                       9999   99999985 59999999999999999999999999999


Q ss_pred             ChHHHHHHHHhc---CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169          404 DGSAVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT  458 (459)
Q Consensus       404 d~~~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~  458 (459)
                      |+.+++.+|+..   ++.++|+|+.+|++.||++.|||||+.||+++|+.|+++|+++
T Consensus       178 d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk~~ai~~A~e~a~~i  235 (243)
T d1a6db1         178 DPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMI  235 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhcccEecHHHHHHHHHHHHHHHHHH
Confidence            999999999864   5789999999999999999999999999999999999999985
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure