Citrus Sinensis ID: 040173

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MLCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEVLVWVVEVSSQQSLNLKKYVGKRKEKKQQLNEI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccEEcccEEEEc
Coil and Loop (DISEMBL)
mlcaslagvaiggplfgmMGFSFLATVTLLLISspvllifsPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEVLVWVVEVSSQQSLNLKKYVGKRKEKKQQLNEI
Flexible Loop (DISEMBL)
MLCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEVLVWVVEvssqqslnlkkyvgkrkekkqqlnei
Low Complexity Region (SEG)
MLCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICreverlevlvwvvevSSQQSLNLKKYVGKRKEKKQQLNEI
Disordered region (IsUnstruct)
**CASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEVLVWVVEVSS***********************
Disordered Region (DISOPRED)
*LCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVE************************************
Disordered Region (DISEMBL)
MLCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEVLVWVVEVSSQQSLNLKKY**************
Disordered Region (DISPRO)
MLCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEVLVWVVEVSSQQSLNLKKYVGKRKEKKQQLNEI
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEVLVWVVEVSSQQSLNLKKYVGKRKEKKQQLNEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q9SS98	183	Oleosin 5 OS=Arabidopsis	yes	no	0.931	0.590	0.330	8e-11
C3S7F0	193	Oleosin S1-2 OS=Brassica	N/A	no	0.741	0.445	0.321	5e-08
Q43284	141	Oleosin 14.9 kDa OS=Arabi	no	no	0.672	0.553	0.379	2e-06
P29529	181	Oleosin (Fragment) OS=Hel	N/A	no	0.612	0.392	0.338	4e-05
P29109	183	Oleosin Bn-V (Fragment) O	N/A	no	0.448	0.284	0.403	0.0002
P29527	168	Oleosin 18.2 kDa OS=Gossy	N/A	no	0.698	0.482	0.268	0.0003
P29110	195	Oleosin Bn-III OS=Brassic	N/A	no	0.663	0.394	0.311	0.0005
P29111	175	Major oleosin NAP-II (Fra	N/A	no	0.663	0.44	0.311	0.0006

>sp|Q9SS98|OLEO5_ARATH Oleosin 5 OS=Arabidopsis thaliana GN=At3g01570 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 66/109 (60%), Gaps = 1/109 (0%)

Query: 8   GVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIA 67
           GV IGG L  + G +   +V  L+++ P+ LIFSP++V A FV+  A+TGF A+ A+G+ 
Sbjct: 43  GVPIGGTLLTIAGLTLAGSVIGLMLAFPLFLIFSPVIVPAAFVIGLAMTGFLASGAIGLT 102

Query: 68  GVFTLAWICREVERL-EVLVWVVEVSSQQSLNLKKYVGKRKEKKQQLNE 115
           G+ +++W+   + R  + +   +E +  +  ++ +YVG+R +   Q  E
Sbjct: 103 GLSSMSWVLNYIRRAGQHIPEELEEAKHRLADMAEYVGQRTKDAGQTIE 151

May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth.
Arabidopsis thaliana (taxid: 3702)

>sp|C3S7F0|OLES1_BRANA Oleosin S1-2 OS=Brassica napus GN=S1 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 56/87 (64%), Gaps = 1/87 (1%)

Query: 30  LLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERL-EVLVWV 88
           L+++ P+ LIFSP++V A FV+  A+TGF A+ A+G+ G+ +++W+   + R+ E +   
Sbjct: 65  LILAFPLFLIFSPVIVPAAFVIGLAMTGFMASGAIGLTGLSSMSWVLNHIRRVRERIPDE 124

Query: 89  VEVSSQQSLNLKKYVGKRKEKKQQLNE 115
           ++ + Q+  ++ +Y G+R +   Q  E
Sbjct: 125 LDEAKQRLADMAEYAGQRTKDAGQTIE 151

May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth.

Brassica napus (taxid: 3708)

>sp|Q43284|OLEO3_ARATH Oleosin 14.9 kDa OS=Arabidopsis thaliana GN=OL3 PE=2 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 1   MLCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTA 60
           M+ A+ A V  GG L  + G +   TV  L +++P+L+IFSP+LV AV  +   +TGF A
Sbjct: 27  MVKAATA-VTAGGSLLVLSGLTLAGTVIALTVATPLLVIFSPVLVPAVVTVALIITGFLA 85

Query: 61  AIAMGIAGVFTLAWICREV 79
           +   GIA +   +W+ R +
Sbjct: 86  SGGFGIAAITAFSWLYRHM 104

May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth.

Arabidopsis thaliana (taxid: 3702)

>sp|P29529|OLEO_HELAN Oleosin (Fragment) OS=Helianthus annuus PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 46/71 (64%)

Query: 11  IGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVF 70
           +GG L G+   +F+ T+  L +++P+ +IFSP++V AV  +  A+TGF A+   G+ G+ 
Sbjct: 45  VGGILLGLAALTFIGTLIGLALATPLFVIFSPIIVPAVLTIGLAVTGFLASGTFGLTGLS 104

Query: 71  TLAWICREVER 81
           +L+++   V +
Sbjct: 105 SLSYLFNMVRQ 115

May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth.

Helianthus annuus (taxid: 4232)

>sp|P29109|OLEO5_BRANA Oleosin Bn-V (Fragment) OS=Brassica napus PE=2 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%)

Query: 26  TVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICR 77
           TV  L++++P+L+IFSP+LV A+  +   +TGF ++ A GIA +   +WI +
Sbjct: 69  TVIALIVATPLLVIFSPILVPALITVALLITGFLSSGAFGIAAITVFSWIYK 120

May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth.

Brassica napus (taxid: 3708)

>sp|P29527|OLEO6_GOSHI Oleosin 18.2 kDa OS=Gossypium hirsutum GN=MATP6-A PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 56/93 (60%), Gaps = 12/93 (12%)

Query: 30  LLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICRE------VERLE 83
           L++++P+ +IFSP+LV A   +  A+TGF ++ A G+ G+ +L+++          E+L+
Sbjct: 71  LMLATPLFIIFSPVLVPAAIAIAMAVTGFLSSGAFGLTGLSSLSYVLNRLRYATGTEQLD 130

Query: 84  VLVWVVEVSSQQSLNLKKYVGKR-KEKKQQLNE 115
                ++ + ++  ++ +YVG++ KE  Q++  
Sbjct: 131 -----LDHAKRRVQDMTEYVGQKTKEVGQKIEN 158

May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth.

Gossypium hirsutum (taxid: 3635)

>sp|P29110|OLEO3_BRANA Oleosin Bn-III OS=Brassica napus PE=2 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%)

Query: 1   MLCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTA 60
            +  ++  V  GG L  +   + + TV  L +++P+L+IFSP+LV A+  +   +TGF +
Sbjct: 56  QIAKAVTAVTAGGSLLVLSSLTLVGTVIALTVATPLLVIFSPILVPALITVAMLITGFLS 115

Query: 61  AIAMGIAGVFTLAWICR 77
           +   GIA +   +WI +
Sbjct: 116 SGGFGIAAITVFSWIYK 132

May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth.

Brassica napus (taxid: 3708)

>sp|P29111|OLEO2_BRANA Major oleosin NAP-II (Fragment) OS=Brassica napus PE=1 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%)

Query: 1   MLCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTA 60
            +  ++  V  GG L  +   + + TV  L +++P+L+IFSP+LV A+  +   +TGF +
Sbjct: 44  QIAKAVTAVTAGGSLLVLSSLTLVGTVIALTVATPLLVIFSPILVPALITVALLITGFLS 103

Query: 61  AIAMGIAGVFTLAWICR 77
           +   GIA +   +WI +
Sbjct: 104 SGGFGIAAITVFSWIYK 120

May have a structural role to stabilize the lipid body during desiccation of the seed by preventing coalescence of the oil. Probably interacts with both lipid and phospholipid moieties of lipid bodies. May also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth.

Brassica napus (taxid: 3708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
15232141	183	oleosin 5 [Arabidopsis thaliana] gi|7520	0.931	0.590	0.330	3e-09
15241122	150	glycine-rich protein / oleosin [Arabidop	0.577	0.446	0.537	5e-09
297793091	143	hypothetical protein ARALYDRAFT_918751 [	0.577	0.468	0.522	1e-08
297793097	142	hypothetical protein ARALYDRAFT_918754 [	0.577	0.471	0.522	1e-08
297828582	183	glycine-rich protein [Arabidopsis lyrata	0.931	0.590	0.330	1e-08
196122058	193	oleosin S1-1 [Brassica napus]	0.741	0.445	0.352	1e-07
62798714	148	oleosin [Coffea arabica]	0.853	0.668	0.317	1e-06
196122074	149	oleosin S5-2 [Brassica napus]	0.896	0.697	0.309	1e-06
257096653	193	RecName: Full=Oleosin S1-2 gi|196122060|	0.741	0.445	0.321	2e-06
289719012	203	putative oleosin [Trifolium repens]	1.0	0.571	0.305	3e-06

>gi|15232141|ref|NP_186806.1| oleosin 5 [Arabidopsis thaliana] gi|75207478|sp|Q9SS98.1|OLEO5_ARATH RecName: Full=Oleosin 5 gi|6016716|gb|AAF01542.1|AC009325_12 putative oleosin [Arabidopsis thaliana] gi|16649133|gb|AAL24418.1| putative oleosin [Arabidopsis thaliana] gi|20148653|gb|AAM10217.1| putative oleosin [Arabidopsis thaliana] gi|332640168|gb|AEE73689.1| oleosin 5 [Arabidopsis thaliana]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 66/109 (60%), Gaps = 1/109 (0%)

Query: 8   GVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIA 67
           GV IGG L  + G +   +V  L+++ P+ LIFSP++V A FV+  A+TGF A+ A+G+ 
Sbjct: 43  GVPIGGTLLTIAGLTLAGSVIGLMLAFPLFLIFSPVIVPAAFVIGLAMTGFLASGAIGLT 102

Query: 68  GVFTLAWICREVERL-EVLVWVVEVSSQQSLNLKKYVGKRKEKKQQLNE 115
           G+ +++W+   + R  + +   +E +  +  ++ +YVG+R +   Q  E
Sbjct: 103 GLSSMSWVLNYIRRAGQHIPEELEEAKHRLADMAEYVGQRTKDAGQTIE 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241122|ref|NP_200421.1| glycine-rich protein / oleosin [Arabidopsis thaliana] gi|9758630|dbj|BAB09292.1| unnamed protein product [Arabidopsis thaliana] gi|17064992|gb|AAL32650.1| Unknown protein [Arabidopsis thaliana] gi|20260026|gb|AAM13360.1| unknown protein [Arabidopsis thaliana] gi|332009338|gb|AED96721.1| glycine-rich protein / oleosin [Arabidopsis thaliana]

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 46/67 (68%)

Query: 13  GPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTL 72
           GPLFG+M FSF+ATVTL LI+SP+LLIF+P  +  V VLV A+ G   A AM + G+  L
Sbjct: 37  GPLFGLMSFSFVATVTLFLIASPLLLIFAPAFMVTVAVLVSAMVGVGVAAAMWMMGIAAL 96

Query: 73  AWICREV 79
               RE+
Sbjct: 97  VCCGREI 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793091|ref|XP_002864430.1| hypothetical protein ARALYDRAFT_918751 [Arabidopsis lyrata subsp. lyrata] gi|297310265|gb|EFH40689.1| hypothetical protein ARALYDRAFT_918751 [Arabidopsis lyrata subsp. lyrata]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 46/67 (68%)

Query: 13  GPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTL 72
           GPLFG+M FSF+ATVTL LI+SP+LL F+P+ +  V VLV A+ G   A AM + G+  L
Sbjct: 36  GPLFGLMSFSFVATVTLFLIASPLLLTFAPVFMVMVAVLVAAMVGVGVAAAMWMMGIAAL 95

Query: 73  AWICREV 79
               RE+
Sbjct: 96  VCCGREI 102

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793097|ref|XP_002864433.1| hypothetical protein ARALYDRAFT_918754 [Arabidopsis lyrata subsp. lyrata] gi|297310268|gb|EFH40692.1| hypothetical protein ARALYDRAFT_918754 [Arabidopsis lyrata subsp. lyrata]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 46/67 (68%)

Query: 13  GPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTL 72
           GPLFG+M FSF+ATVTL LI+SP+LL F+P+ +  V VLV A+ G   A AM + G+  L
Sbjct: 35  GPLFGLMSFSFVATVTLFLIASPLLLTFAPVFMVMVAVLVAAMVGVGVAAAMWMMGIAAL 94

Query: 73  AWICREV 79
               RE+
Sbjct: 95  VCCGREI 101

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828582|ref|XP_002882173.1| glycine-rich protein [Arabidopsis lyrata subsp. lyrata] gi|297328013|gb|EFH58432.1| glycine-rich protein [Arabidopsis lyrata subsp. lyrata]

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 66/109 (60%), Gaps = 1/109 (0%)

Query: 8   GVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIA 67
           GV +GG L  + G +   +V  L+++ P+ LIFSP++V A FV+  A+TGF A+ A+G+ 
Sbjct: 43  GVPVGGTLLTIAGLTLAGSVIGLMLAFPLFLIFSPVIVPAAFVIGLAMTGFLASGAIGLT 102

Query: 68  GVFTLAWICREVE-RLEVLVWVVEVSSQQSLNLKKYVGKRKEKKQQLNE 115
           G+ +++W+   +    E +   +E + Q+  ++ +YVG+R +   Q  E
Sbjct: 103 GLSSMSWVLNYIRWAGEHIPEELEEAKQRLADMAEYVGQRTKDAGQTIE 151

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|196122058|gb|ACG69504.1| oleosin S1-1 [Brassica napus]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 59/88 (67%), Gaps = 2/88 (2%)

Query: 30  LLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERL-EVLVWV 88
           L+++ P+ LIFSP++V A FV+  A+TGF A+ A+G+ G+ +++W+   + R+ E +   
Sbjct: 65  LMLAFPLFLIFSPVIVPAAFVIGLAMTGFMASGAIGLTGLSSMSWVLNHIRRVRERMPDE 124

Query: 89  VEVSSQQSLNLKKYVGKR-KEKKQQLNE 115
           +E + Q+  ++ +YVG+R K+  Q + E
Sbjct: 125 LEEAKQRLADMAEYVGQRTKDAGQTIEE 152

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62798714|gb|AAY14574.1| oleosin [Coffea arabica]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 8/107 (7%)

Query: 11  IGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVF 70
           + G L G+ G   + TV  L +++P+ +IFSP+LV AVF L  AL GF  + A GI  + 
Sbjct: 38  VAGVLLGLSGLILVGTVIGLAVTTPLFVIFSPILVPAVFALGLALAGFLTSGAFGITALA 97

Query: 71  TLAWICREV--------ERLEVLVWVVEVSSQQSLNLKKYVGKRKEK 109
           +L+W+   +        E++++  W V+ ++ Q     + VG+R + 
Sbjct: 98  SLSWMLNYIRLMKASSQEQMDLAKWRVQDTAGQVGQKARDVGQRTQD 144

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|196122074|gb|ACG69512.1| oleosin S5-2 [Brassica napus]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 6/110 (5%)

Query: 8   GVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIA 67
           GVA GG L  + G +   TV  L +++P+L+IFSP+LV AV  +V  +TGF A+   GIA
Sbjct: 37  GVAAGGSLLVLSGLTLAGTVIALAVATPLLIIFSPVLVPAVITVVLIITGFLASGGFGIA 96

Query: 68  GVFTLAWICREV------ERLEVLVWVVEVSSQQSLNLKKYVGKRKEKKQ 111
            +   +W+ R +      +++E     V      + + +  +G  ++ +Q
Sbjct: 97  AITAFSWLYRHMTGSGSDQKIESARMKVGSRGYDTKSGQHNIGVHQQHQQ 146

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257096653|sp|C3S7F0.1|OLES1_BRANA RecName: Full=Oleosin S1-2 gi|196122060|gb|ACG69505.1| oleosin S1-2 [Brassica napus]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 56/87 (64%), Gaps = 1/87 (1%)

Query: 30  LLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERL-EVLVWV 88
           L+++ P+ LIFSP++V A FV+  A+TGF A+ A+G+ G+ +++W+   + R+ E +   
Sbjct: 65  LILAFPLFLIFSPVIVPAAFVIGLAMTGFMASGAIGLTGLSSMSWVLNHIRRVRERIPDE 124

Query: 89  VEVSSQQSLNLKKYVGKRKEKKQQLNE 115
           ++ + Q+  ++ +Y G+R +   Q  E
Sbjct: 125 LDEAKQRLADMAEYAGQRTKDAGQTIE 151

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289719012|gb|ADD17087.1| putative oleosin [Trifolium repens]

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 1   MLCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTA 60
            + A++ G  IGG LF +   SF+A++  L I +P+ ++FSP+LV A   +  A+ G   
Sbjct: 71  QILATVGGFFIGGTLFLLASISFIASLIGLAIMTPLFILFSPVLVPAALTIGLAVAGILT 130

Query: 61  AIAMGIAGVFTLAWICREVERLEVLV-WVVEVSSQQSLNLKKYVGKR-KEKKQQLNEI 116
           A A G+ G+ +L+W  + V  L+ +V   ++    +  ++  YVG++ K+  Q+  E+
Sbjct: 131 ADACGLTGLMSLSWTVKYVRDLQAVVPEQMDSMKGRVADVASYVGQKTKDVGQKTKEV 188

Source: Trifolium repens

Species: Trifolium repens

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
TAIR|locus:2161805	150	AT5G56100 "AT5G56100" [Arabido	0.637	0.493	0.513	1.8e-14
TAIR|locus:2084223	183	AT3G01570 "AT3G01570" [Arabido	0.965	0.612	0.315	1.7e-11
TAIR|locus:2089189	191	OLEO4 "AT3G27660" [Arabidopsis	0.637	0.387	0.364	2.9e-09
TAIR|locus:2176212	141	OLEO3 "AT5G51210" [Arabidopsis	0.637	0.524	0.386	7.6e-09
TAIR|locus:2117328	173	OLEO1 "AT4G25140" [Arabidopsis	0.637	0.427	0.324	4.2e-08
TAIR|locus:2170558	199	OLEO2 "AT5G40420" [Arabidopsis	0.603	0.351	0.328	8.7e-08
TAIR|locus:2043470	149	AT2G25890 "AT2G25890" [Arabido	0.594	0.463	0.352	1.3e-06
TAIR|locus:2151606	294	AT5G61610 [Arabidopsis thalian	0.586	0.231	0.347	7e-06
TAIR|locus:2183414	106	GRP19 "glycine-rich protein 19	0.577	0.632	0.347	1.5e-05
TAIR|locus:2183399	244	GRP16 "glycine-rich protein 16	0.482	0.229	0.357	2.2e-05

TAIR|locus:2161805 AT5G56100 "AT5G56100" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query:     1 MLCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTA 60
             ++ A++A VA+ GPLFG+M FSF+ATVTL LI+SP+LLIF+P  +  V VLV A+ G   
Sbjct:    25 VVAATVAAVAVVGPLFGLMSFSFVATVTLFLIASPLLLIFAPAFMVTVAVLVSAMVGVGV 84

Query:    61 AIAMGIAGVFTLAWIC 76
             A AM + G+  L  +C
Sbjct:    85 AAAMWMMGIAAL--VC 98

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0012511 "monolayer-surrounded lipid storage body" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0019915 "lipid storage" evidence=ISS

TAIR|locus:2084223 AT3G01570 "AT3G01570" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 36/114 (31%), Positives = 64/114 (56%)

Query:     4 ASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIA 63
             A   GV IGG L  + G +   +V  L+++ P+ LIFSP++V A FV+  A+TGF A+ A
Sbjct:    39 AVFVGVPIGGTLLTIAGLTLAGSVIGLMLAFPLFLIFSPVIVPAAFVIGLAMTGFLASGA 98

Query:    64 MGIAGVFTLAWICXXXXXXXXXXXXXXXSSQQSL-NLKKYVGKR-KEKKQQLNE 115
             +G+ G+ +++W+                 ++  L ++ +YVG+R K+  Q + +
Sbjct:    99 IGLTGLSSMSWVLNYIRRAGQHIPEELEEAKHRLADMAEYVGQRTKDAGQTIED 152

GO:0003674 "molecular_function" evidence=ND

GO:0012511 "monolayer-surrounded lipid storage body" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0019915 "lipid storage" evidence=ISS;RCA

GO:0009845 "seed germination" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2089189 OLEO4 "AT3G27660" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 27/74 (36%), Positives = 46/74 (62%)

Query:     2 LCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAA 61
             + A +AGV IGG L  + G +   +V  LL+S P+ L+FSP++V A   +  A+TG  A+
Sbjct:    52 ILALIAGVPIGGTLLTLAGLTLAGSVIGLLVSIPLFLLFSPVIVPAALTIGLAVTGILAS 111

Query:    62 IAMGIAGVFTLAWI 75
                G+ G+ +++W+
Sbjct:   112 GLFGLTGLSSVSWV 125

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0012511 "monolayer-surrounded lipid storage body" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0019915 "lipid storage" evidence=ISS;RCA

GO:0009845 "seed germination" evidence=IGI;RCA

GO:0010344 "seed oilbody biogenesis" evidence=IGI

GO:0050826 "response to freezing" evidence=RCA;IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

TAIR|locus:2176212 OLEO3 "AT5G51210" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 29/75 (38%), Positives = 45/75 (60%)

Query:     1 MLCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTA 60
             M+ A+ A V  GG L  + G +   TV  L +++P+L+IFSP+LV AV  +   +TGF A
Sbjct:    27 MVKAATA-VTAGGSLLVLSGLTLAGTVIALTVATPLLVIFSPVLVPAVVTVALIITGFLA 85

Query:    61 AIAMGIAGVFTLAWI 75
             +   GIA +   +W+
Sbjct:    86 SGGFGIAAITAFSWL 100

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0012511 "monolayer-surrounded lipid storage body" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0019915 "lipid storage" evidence=ISS

TAIR|locus:2117328 OLEO1 "AT4G25140" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query:     2 LCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAA 61
             +  +   V  GG L  +   + + TV  L +++P+L+IFSP+LV A+  +   +TGF ++
Sbjct:    43 IAKAATAVTAGGSLLVLSSLTLVGTVIALTVATPLLVIFSPILVPALITVALLITGFLSS 102

Query:    62 IAMGIAGVFTLAWI 75
                GIA +   +WI
Sbjct:   103 GGFGIAAITVFSWI 116

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0019915 "lipid storage" evidence=ISS;RCA;IMP

GO:0010344 "seed oilbody biogenesis" evidence=IGI;IMP

GO:0009845 "seed germination" evidence=IGI;RCA

GO:0050826 "response to freezing" evidence=RCA;IMP

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

TAIR|locus:2170558 OLEO2 "AT5G40420" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 23/70 (32%), Positives = 42/70 (60%)

Query:     6 LAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMG 65
             L GV + G L  + G     +V  L+++ P+ L+FSP++V A   +  A+TGF A+   G
Sbjct:    58 LIGVPVVGSLLALAGLLLAGSVIGLMVALPLFLLFSPVIVPAALTIGLAMTGFLASGMFG 117

Query:    66 IAGVFTLAWI 75
             + G+ +++W+
Sbjct:   118 LTGLSSISWV 127

GO:0003674 "molecular_function" evidence=ND

GO:0012511 "monolayer-surrounded lipid storage body" evidence=IEA;IDA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0019915 "lipid storage" evidence=ISS;RCA;IMP

GO:0010344 "seed oilbody biogenesis" evidence=IGI;IMP

GO:0009845 "seed germination" evidence=IGI;RCA

GO:0050826 "response to freezing" evidence=RCA;IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

TAIR|locus:2043470 AT2G25890 "AT2G25890" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 25/71 (35%), Positives = 41/71 (57%)

Query:     6 LAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALT-GFTAAIAM 64
             +    IG  L  + G +   TV  L++++P++++FSP+LV AV + +G LT GF  +   
Sbjct:    32 VTAATIGLSLLVLSGLTLTGTVIGLIVATPLMVLFSPVLVPAV-ITIGLLTMGFLFSGGC 90

Query:    65 GIAGVFTLAWI 75
             G+A    L WI
Sbjct:    91 GVAAATALTWI 101

GO:0003674 "molecular_function" evidence=ND

GO:0012511 "monolayer-surrounded lipid storage body" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0019915 "lipid storage" evidence=ISS

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2151606 AT5G61610 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 24/69 (34%), Positives = 38/69 (55%)

Query:     7 AGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGI 66
             AG+A+   +  + G +F  T   L +  PVL++ SP+LV AV       TGF A+ ++G 
Sbjct:    14 AGIAVVSFMI-LTGLTFAGTAVALTVMIPVLVVLSPILVPAVITSSFLATGFLASGSLGA 72

Query:    67 AGVFTLAWI 75
              G+  L W+
Sbjct:    73 LGIALLIWL 81

GO:0005576 "extracellular region" evidence=ISM

GO:0012511 "monolayer-surrounded lipid storage body" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0019915 "lipid storage" evidence=ISS

TAIR|locus:2183414 GRP19 "glycine-rich protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query:     7 AGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGI 66
             AGVA+   L    G +   +V   +IS+P+ +IFSP+LV A        +GFTA+ + G 
Sbjct:    11 AGVALA--LLTFAGITLGGSVVACIISTPLFVIFSPVLVPATIATTLLASGFTASGSFGA 68

Query:    67 AGVFTLAWI 75
                  L+W+
Sbjct:    69 TAFTILSWL 77

GO:0009507 "chloroplast" evidence=ISM

GO:0012511 "monolayer-surrounded lipid storage body" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0019915 "lipid storage" evidence=ISS

GO:0005576 "extracellular region" evidence=IDA

GO:0008289 "lipid binding" evidence=ISS

GO:0019953 "sexual reproduction" evidence=RCA;IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2183399 GRP16 "glycine-rich protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query:    20 GFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWI 75
             G +F A++  L I++P+ +IFSP+LV A       + G TAA+A+G+     + W+
Sbjct:    29 GITFGASIVGLTIATPLFVIFSPILVPATIATTFLVGGATAAVALGVTAFALILWL 84

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0012511 "monolayer-surrounded lipid storage body" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0019915 "lipid storage" evidence=ISS

GO:0045735 "nutrient reservoir activity" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0019953 "sexual reproduction" evidence=RCA;IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G01570	glycine-rich protein / oleosin; glycine-rich protein / oleosin; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- lipid storage; LOCATED IN- monolayer-surrounded lipid storage body, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s- Oleosin (InterPro-IPR000136); BEST Arabidopsis thaliana protein match is- OLEO2 (OLEOSIN 2) (TAIR-AT5G40420.1); Has 384 Blast hits to 384 proteins in 47 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 384; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). ; May have a structural role to stabilize the lipid body during [...] (183 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT4G30840	WD-40 repeat protein family; WD-40 repeat protein family; FUNCTIONS IN- molecular_function unkn [...] (361 aa)					•				0.819
	OLEO1	OLEO1 (OLEOSIN 1); Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accu [...] (173 aa)				•			•	•	0.686
	OLEO2	OLEO2 (OLEOSIN 2); Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accu [...] (199 aa)				•			•	•	0.677
	CRU3	CRU3 (CRUCIFERIN 3); nutrient reservoir; Encodes a 12S seed storage protein that is tyrosine-ph [...] (524 aa)				•					0.673
	ATPER1	ATPER1; antioxidant/ thioredoxin peroxidase; encodes a protein similar to the 1-cysteine (1-Cys [...] (216 aa)				•					0.673
	CRA1	CRA1 (CRUCIFERINA); nutrient reservoir; Encodes a 12S seed storage protein. The Landsberg erect [...] (472 aa)				•					0.669
	AT1G04560	AWPM-19-like membrane family protein; AWPM-19-like membrane family protein; FUNCTIONS IN- molec [...] (186 aa)				•					0.667
	AT2G28490	cupin family protein; cupin family protein; FUNCTIONS IN- nutrient reservoir activity; INVOLVED [...] (511 aa)				•					0.663
	TIP3;1	TIP3;1; water channel; Moves to the Protein Storage Vacuole in a Golgi independent manner ; Wat [...] (268 aa)				•					0.643
	AT1G05510	unknown protein; Protein is tyrosine-phosphorylated and its phosphorylation state is modulated [...] (241 aa)				•					0.623

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	116
pfam01277	118	pfam01277, Oleosin, Oleosin	7e-10

>gnl|CDD|110290 pfam01277, Oleosin, Oleosin

 Score = 52.0 bits (125), Expect = 7e-10
 Identities = 26/72 (36%), Positives = 44/72 (61%)

Query: 4  ASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIA 63
          A +  +  GG L  + G +   TV  L +++P+ +IFSP+LV A   +  A+TGF A+ A
Sbjct: 7  AVVTALPAGGSLLVLAGLTLAGTVIGLAVATPLFVIFSPVLVPAAIAIGLAVTGFLASGA 66

Query: 64 MGIAGVFTLAWI 75
           G+ G+ +L+W+
Sbjct: 67 FGLTGLSSLSWL 78

Length = 118

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
PF01277	118	Oleosin: Oleosin; InterPro: IPR000136 Oleosins []	100.0
PF11990	121	DUF3487: Protein of unknown function (DUF3487); In	93.05
PF01277	118	Oleosin: Oleosin; InterPro: IPR000136 Oleosins []	92.74
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	90.09
PRK10801	227	colicin uptake protein TolQ; Provisional	85.79
PF12537	72	DUF3735: Protein of unknown function (DUF3735); In	85.65
TIGR02797	211	exbB tonB-system energizer ExbB. This model descri	85.32
PRK09459	76	pspG phage shock protein G; Reviewed	85.22
COG0811	216	TolQ Biopolymer transport proteins [Intracellular	84.96
PRK10414	244	biopolymer transport protein ExbB; Provisional	84.62
TIGR03750	111	conj_TIGR03750 conjugative transfer region protein	83.91
TIGR02796	215	tolQ TolQ protein. TolQ is one of the essential co	81.07

>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies

Probab=100.00  E-value=4.7e-50  Score=293.55  Aligned_cols=112  Identities=24%  Similarity=0.417  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040173            2 LCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVER   81 (116)
Q Consensus         2 vl~~~tl~~~gg~LL~LaGlTL~gtvigL~vatPL~vifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g   81 (116)
                      +++++++++.+++||.|+|+||+||++||+++||||+||||||||++++++++++||++||+||++++++++|+|||+||
T Consensus         5 vl~~~~~~~~gg~LL~LaGlTL~gtvigL~vatPLfvifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~rg   84 (118)
T PF01277_consen    5 VLAVVTLLPAGGTLLVLAGLTLAGTVIGLAVATPLFVIFSPVLVPAAIAIGLAVAGFLTSGAFGLTALSSLSWMYNYFRG   84 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c-cccccchHHHHHhhHhHHHHHhHHHHHhhhh
Q 040173           82 L-EVLVWVVEVSSQQSLNLKKYVGKRKEKKQQL  113 (116)
Q Consensus        82 ~-p~g~~~~d~Ar~R~~d~a~~vg~k~~e~g~~  113 (116)
                      + |+++||+||||+|++|+++|+|||+||+||+
T Consensus        85 ~~~~~~~q~d~Ak~ri~d~a~~v~~kake~gq~  117 (118)
T PF01277_consen   85 RHPPGPDQLDYAKRRIADTASYVGQKAKEVGQK  117 (118)
T ss_pred             CCCCCCccHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9 9999999999999999999999999999996

Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane

>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised

Probab=93.05  E-value=0.85  Score=33.54  Aligned_cols=52  Identities=15%  Similarity=0.067  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040173           22 SFLATVTLLLISSPVLLIFSPL-LVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEV   84 (116)
Q Consensus        22 TL~gtvigL~vatPL~vifSPV-lVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~p~   84 (116)
                      ...++++|+.++.|+-++++++ .+|....++.+..=+.           .-.|+-|+-||+|.
T Consensus        30 a~~~~~~g~~~gl~la~~~g~~a~~pt~~ll~~~~~v~~-----------gg~~l~rlKRGKP~   82 (121)
T PF11990_consen   30 AGVGFVAGLVVGLPLALLTGWWAMIPTGALLGPILGVFV-----------GGKLLARLKRGKPE   82 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHcCCch
Confidence            3467889999999999999988 6777766555543322           33678888888864

This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.

>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies

Probab=92.74  E-value=3.1  Score=30.88  Aligned_cols=96  Identities=17%  Similarity=0.036  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHhhHHH---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcccccccch
Q 040173           15 LFGMMGFSFLATVTLLLISSPVLLIFSPLLV---SAVFVLVGALTGFTAAI--AMGIAGVFTLAWICREVERLEVLVWVV   89 (116)
Q Consensus        15 LL~LaGlTL~gtvigL~vatPL~vifSPVlV---Paai~~~l~~~Gfl~sg--~~g~~~ls~lsW~~~y~~g~p~g~~~~   89 (116)
                      ++...|..|.=+-+-|.-+.=-+++.+|+++   |.-+-.+.+ .++..+|  ..|.-++..++|+-.-+|- -.+.++ 
T Consensus        11 ~~~~gg~LL~LaGlTL~gtvigL~vatPLfvifSPVlVPaai~-~~l~~~Gfl~sg~~g~~~ls~lsW~~~y-~rg~~~-   87 (118)
T PF01277_consen   11 LLPAGGTLLVLAGLTLAGTVIGLAVATPLFVIFSPVLVPAAIA-IGLAVAGFLTSGAFGLTALSSLSWMYNY-FRGRHP-   87 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHH-hccCCC-
Confidence            3334444444333444444444788899876   544444333 3344433  2445567888888776544 222221 


Q ss_pred             HHHHHhhHhHHHHHhHHHHHhhhhh
Q 040173           90 EVSSQQSLNLKKYVGKRKEKKQQLN  114 (116)
Q Consensus        90 d~Ar~R~~d~a~~vg~k~~e~g~~~  114 (116)
                       ..-+|+++..++++|++++++||.
T Consensus        88 -~~~~q~d~Ak~ri~d~a~~v~~ka  111 (118)
T PF01277_consen   88 -PGPDQLDYAKRRIADTASYVGQKA  111 (118)
T ss_pred             -CCCccHHHHHHHHHHHHHHHHHHH
Confidence             112456667778888888888875

Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=90.09  E-value=6.3  Score=29.34  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHhh--hHHHHhhHHHHHHHH
Q 040173           18 MMGFSFLATVTLLLISSP--VLLIFSPLLVSAVFV   50 (116)
Q Consensus        18 LaGlTL~gtvigL~vatP--L~vifSPVlVPaai~   50 (116)
                      ..|+.+..+.|++.+..+  +-.++|+.+....++
T Consensus        13 ilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lA   47 (191)
T PF04156_consen   13 ILGILLIASGIAALVLFISGLGALISFILGIALLA   47 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            334444444443333332  445555555444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK10801 colicin uptake protein TolQ; Provisional

Probab=85.79  E-value=13  Score=29.49  Aligned_cols=67  Identities=12%  Similarity=0.037  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHhhhHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccchHHHHHh
Q 040173           23 FLATVTLLLISSPVLLIF---SPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERL-EVLVWVVEVSSQQ   95 (116)
Q Consensus        23 L~gtvigL~vatPL~vif---SPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~-p~g~~~~d~Ar~R   95 (116)
                      |.|||+|++-+.--+=.-   +|-.+-.+|.-+|.+|      ++|+..-=.-...|||++++ ..-..++|+...+
T Consensus       139 LlGTV~Gmi~aF~~i~~~g~~~~~~~a~GI~~ALitT------a~GL~vAIPAli~yN~f~~ri~~i~~~le~~a~~  209 (227)
T PRK10801        139 LFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIAT------AIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEE  209 (227)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888887654322110   3444444555555443      34444444445789999875 3333344444333

>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance

Probab=85.65  E-value=4.2  Score=26.99  Aligned_cols=54  Identities=9%  Similarity=0.037  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccc-ccchHHHHHhhHhHHHHHhHHHHHh
Q 040173           50 VLVGALTGFTAAIAMGIAGVFTLAWICREVERL--EVL-VWVVEVSSQQSLNLKKYVGKRKEKK  110 (116)
Q Consensus        50 ~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~--p~g-~~~~d~Ar~R~~d~a~~vg~k~~e~  110 (116)
                      +++..+.+.||       |.++++--|.|+.=.  +.. ..++..+.+|+..+-+...+|-||+
T Consensus        15 ViGVt~mAiLS-------G~gaVstpy~~~~~~~~~v~~~~~i~~~~~~l~~t~~~l~~Kk~~l   71 (72)
T PF12537_consen   15 VIGVTLMAILS-------GFGAVSTPYYYFSYFRRPVSRESDINNAERRLWHTRDMLVEKKKRL   71 (72)
T ss_pred             HHHHHHHHHHh-------hhhHHccHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666666666       333444444444332  443 5667788888887777788887764

It belongs to the Golgi pH regulator (1.A.38 from TC) family

>TIGR02797 exbB tonB-system energizer ExbB

Probab=85.32  E-value=12  Score=29.09  Aligned_cols=70  Identities=14%  Similarity=-0.000  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhhhHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHhhHhH
Q 040173           23 FLATVTLLLISSPVLLIF---SPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEVLVWVVEVSSQQSLNL   99 (116)
Q Consensus        23 L~gtvigL~vatPL~vif---SPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~p~g~~~~d~Ar~R~~d~   99 (116)
                      |.|||+|++-+.--+=--   +|--+-.+|.-+|.+|      ++|+..-=.-...|||+++      |.|.-+++|.+.
T Consensus       134 LLGTV~Gmi~aF~~ia~~g~~~~~~lA~GI~eALitT------A~GL~VAIPAli~yn~f~~------ri~~~~~~le~~  201 (211)
T TIGR02797       134 LFGTVWGIMNSFIGISKSQTTNLAVVAPGIAEALLAT------AIGLVAAIPAVVIYNVFAR------SIAGYRALLADA  201 (211)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence            467888877654322100   2433333444444333      3344444444578999976      567777777777


Q ss_pred             HHHHh
Q 040173          100 KKYVG  104 (116)
Q Consensus       100 a~~vg  104 (116)
                      +.++-
T Consensus       202 ~~e~~  206 (211)
T TIGR02797       202 SAGVE  206 (211)
T ss_pred             HHHHH
Confidence            66553

This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.

>PRK09459 pspG phage shock protein G; Reviewed

Probab=85.22  E-value=10  Score=26.38  Aligned_cols=55  Identities=13%  Similarity=0.283  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040173           14 PLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVER   81 (116)
Q Consensus        14 ~LL~LaGlTL~gtvigL~vatPL~vifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g   81 (116)
                      ..|.++|+|+.|...++.+++-...+..=.             |+.--=-=.+--.....|+||..+.
T Consensus        12 ~~LlvTGiSllgv~aAl~va~~vM~l~Gm~-------------~lviKLLPWLil~~v~vW~~r~~~~   66 (76)
T PRK09459         12 VMLLVTGISLLGIIAALGVATLVMFLGGMF-------------ALMIKLLPWLLLAVVVVWVIRAIKA   66 (76)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            357889999999998888877655443211             0000011123334667899998765

>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]

Probab=84.96  E-value=16  Score=28.62  Aligned_cols=80  Identities=16%  Similarity=0.064  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 040173            9 VAIGGPLFGMMGFSFLATVTLLLISSPVLLIFS---PLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEVL   85 (116)
Q Consensus         9 ~~~gg~LL~LaGlTL~gtvigL~vatPL~vifS---PVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~p~g   85 (116)
                      ....+.++.     |.|||+|+.-+.   .=.+   . -=|++++-+++.+  +.+-+.|+.+--.-...|||++++   
T Consensus       125 I~s~aP~lG-----L~GTV~GIm~aF---~~i~~~~~-~~~a~vA~GIseA--L~aTA~GL~vAIPAvi~yn~l~r~---  190 (216)
T COG0811         125 IGSIAPFLG-----LLGTVWGIMPAF---IGIGAGGG-ADLAVVAPGISEA--LIATAIGLFVAIPAVVAYNVLRRK---  190 (216)
T ss_pred             HHHhhhHHH-----HHHHHHHHHHHH---HHHhccCC-CCHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            334444554     457787776442   2222   1 1233333333332  223355666666677899999885   


Q ss_pred             ccchHHHHHhhHhHHHHHhH
Q 040173           86 VWVVEVSSQQSLNLKKYVGK  105 (116)
Q Consensus        86 ~~~~d~Ar~R~~d~a~~vg~  105 (116)
                         .+.=.+++.+.++++-+
T Consensus       191 ---~~~~~~~~e~~~~~l~~  207 (216)
T COG0811         191 ---VEELLAKLEDFAEELEL  207 (216)
T ss_pred             ---HHHHHHHHHHHHHHHHH
Confidence               33333445555544433

>PRK10414 biopolymer transport protein ExbB; Provisional

Probab=84.62  E-value=16  Score=29.62  Aligned_cols=82  Identities=18%  Similarity=0.096  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040173            6 LAGVAIGGPLFGMMGFSFLATVTLLLISSPVLL---IFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERL   82 (116)
Q Consensus         6 ~tl~~~gg~LL~LaGlTL~gtvigL~vatPL~v---ifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~   82 (116)
                      +........++.     |.|||+|++-+.--+=   --+|-.+-.+|.-+|..|      ++|+..--.-...|||++.+
T Consensus       133 L~ti~~~aPllG-----LlGTV~Gmi~aF~~ia~~g~~~~~~va~GI~eALitT------a~GL~vAIPAliayn~f~~r  201 (244)
T PRK10414        133 LATIGAISPFVG-----LFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLAT------AIGLVAAIPAVVIYNVFARQ  201 (244)
T ss_pred             HHHHHHHhhHHH-----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence            333444445554     4578888876543321   025656655666665544      44555555556899999987


Q ss_pred             -cccccchHHHHHhhHh
Q 040173           83 -EVLVWVVEVSSQQSLN   98 (116)
Q Consensus        83 -p~g~~~~d~Ar~R~~d   98 (116)
                       ..-.+++|+...++.+
T Consensus       202 i~~~~~~me~~a~~l~~  218 (244)
T PRK10414        202 IGGYKAMLGDVAAQVLL  218 (244)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence             5555666666555543

>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family

Probab=83.91  E-value=12  Score=27.49  Aligned_cols=52  Identities=12%  Similarity=-0.043  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHhhhHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 040173           23 FLATVTLLLISSPVLLIFS-PLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEVL   85 (116)
Q Consensus        23 L~gtvigL~vatPL~vifS-PVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~p~g   85 (116)
                      .++.+.|+++..|+.++++ ..++|..+.++.+.. .          .-.-.|+-|+=||+|.+
T Consensus        28 ~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~-v----------~~gg~~l~rlKRGrPe~   80 (111)
T TIGR03750        28 GVGLAAGLVLGLLLALLAGPWALIPTGALLGPILV-V----------LIGGKLLARLKRGKPEG   80 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----------HHhHHHHHHHHcCCCch
Confidence            3566778888888866666 556666555554332 1          12335777777887643

Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>TIGR02796 tolQ TolQ protein

Probab=81.07  E-value=12  Score=29.41  Aligned_cols=81  Identities=17%  Similarity=0.122  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040173            5 SLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLI----FSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVE   80 (116)
Q Consensus         5 ~~tl~~~gg~LL~LaGlTL~gtvigL~vatPL~vi----fSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~   80 (116)
                      ++........+|.|     .|||+|++-+.--+=.    -+|-.+--+|.-+|..|      ++|+..-=.-.=.|||++
T Consensus       124 ~L~ti~~~aPllGL-----LGTV~Gmi~aF~~i~~~~g~~~~~~la~GI~~ALitT------a~GL~vAIPali~yn~f~  192 (215)
T TIGR02796       124 FLATIGSTSPFIGL-----FGTVWGIMHSFQAIGGSKNQATLAVVAPGIAEALIAT------AIGLFAAIPAVIAYNKLS  192 (215)
T ss_pred             HHHHHHHHhhHHHH-----HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence            33444445555554     5788887765433322    12333444444444433      233333223335799998


Q ss_pred             cccccccchHHHHHhhHhHHHH
Q 040173           81 RLEVLVWVVEVSSQQSLNLKKY  102 (116)
Q Consensus        81 g~p~g~~~~d~Ar~R~~d~a~~  102 (116)
                      ++      +|.-.++|.+.+.+
T Consensus       193 ~~------i~~~~~~me~~~~~  208 (215)
T TIGR02796       193 TQ------VNKIEQRYENFADE  208 (215)
T ss_pred             HH------HHHHHHHHHHHHHH
Confidence            74      44444444444433

TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00