Citrus Sinensis ID: 040176

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MAGPGRYCCKDVLPFTATVAMECINVGLNTLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVSEDPGVDRQESAAAQKVPLLQSRKNELEHGRM
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHEEccccccccccccccccccHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
magpgrycckdvlpFTATVAMECINVGLNTLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKakeevsedpgvdrqesaaaqkvpllQSRKNELEHGRM
Flexible Loop (DISEMBL)
MAGPGRYCCKDVLPFTATVAMECINVGLNTLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVSEDPGVDrqesaaaqkvpllqsrknelehgrm
Low Complexity Region (SEG)
MAGPGRYCCKDVLPFTATVAMECINVGLNTLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVSEDPGVDRQESAAAQKVPLLQSRKNELEHGRM
Disordered region (IsUnstruct)
*****RYCCKDVLPFTATVAMECINVGLNTLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK*************************************
Disordered Region (DISOPRED)
*AGPGRYCCKDVLPFTATVAMECINVGLNTLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG**************************************
Disordered Region (DISEMBL)
MAGPGRYCCKDVLPFTATVAMECINVGLNTLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAK**************AAAQKVPLLQSRKNELEHGRM
Disordered Region (DISPRO)
***PGRYCCKDVLPFTATVAMECINVGLNTLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGPGRYCCKDVLPFTATVAMECINVGLNTLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVSEDPGVDRQESAAAQKVPLLQSRKNELEHGRM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q94JU2	367	WAT1-related protein At3g	yes	no	0.647	0.250	0.553	8e-25
F4KHA8	370	WAT1-related protein At5g	no	no	0.647	0.248	0.515	1e-21
Q8VYZ7	360	WAT1-related protein At3g	no	no	0.711	0.280	0.467	7e-21
F4IYZ0	358	WAT1-related protein At3g	no	no	0.718	0.284	0.457	7e-20
Q56X95	355	WAT1-related protein At3g	no	no	0.598	0.239	0.489	4e-18
Q9FL08	368	WAT1-related protein At5g	no	no	0.633	0.244	0.443	1e-17
Q945L4	339	WAT1-related protein At5g	no	no	0.626	0.262	0.461	3e-17
Q9LRS5	353	WAT1-related protein At3g	no	no	0.676	0.271	0.455	5e-17
F4JK59	347	WAT1-related protein At4g	no	no	0.528	0.216	0.494	1e-14
Q9LPF1	370	WAT1-related protein At1g	no	no	0.788	0.302	0.316	1e-11

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  112 bits (280), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 77/103 (74%), Gaps = 11/103 (10%)

Query: 47  VYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106
           ++++ +   GP+FVAMFKPLSIAIAVAMGV+FL D LY+GSL+GAT+I++GFYTVMWGKA
Sbjct: 265 IHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLYIGSLIGATVITIGFYTVMWGKA 324

Query: 107 KEE--VSEDPGVDRQES--------AAAQKVPLLQSRKNELEH 139
           KE   V +D   + +E+        + +QK PLL+S KN+ EH
Sbjct: 325 KEVALVEDDNKANHEEANEADLDSPSGSQKAPLLESYKND-EH 366

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 71/99 (71%), Gaps = 7/99 (7%)

Query: 40  MSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFY 99
           +S F  V++++G+   GPV++++FKPLSI IAVAMGVMFLGD LYLGS++G+ I+SLGFY
Sbjct: 273 VSSFGSVIHTWGLHLKGPVYISLFKPLSIVIAVAMGVMFLGDALYLGSVIGSLILSLGFY 332

Query: 100 TVMWGKAKEEVSEDPGVDRQESAAAQKVPLLQSRKNELE 138
           TV+WGKA+E+         +  A  ++ PLL S   E E
Sbjct: 333 TVIWGKARED-------SIKTVAGTEQSPLLPSHTIEEE 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYZ7|WTR20_ARATH WAT1-related protein At3g28070 OS=Arabidopsis thaliana GN=At3g28070 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 69/107 (64%), Gaps = 6/107 (5%)

Query: 30  TLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLV 89
           TL    T   ++   +V++S+ V   GP+++A+FKPLSI IAV MG +FL D LYLG L+
Sbjct: 258 TLITIVTMAIVTSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLI 317

Query: 90  GATIISLGFYTVMWGKAKEEVSEDPGVDRQESAAAQKVPLLQSRKNE 136
           G  +I+LGFY VMWGKA EE       D+   +  +K PLL +RKN+
Sbjct: 318 GGILITLGFYAVMWGKANEE------KDQLSFSEKEKTPLLLNRKND 358

Arabidopsis thaliana (taxid: 3702)

>sp|F4IYZ0|WTR21_ARATH WAT1-related protein At3g28080 OS=Arabidopsis thaliana GN=At3g28080 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 5/107 (4%)

Query: 30  TLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLV 89
           TLF   T+  ++   +V++S+ +    P+++A+FKPLSI IAV MG +FL D LYLG L+
Sbjct: 255 TLFTIVTTGIITSVYYVIHSWAIRHKRPLYLAIFKPLSILIAVVMGTIFLNDSLYLGCLI 314

Query: 90  GATIISLGFYTVMWGKAKEEVSEDPGVDRQESAAAQKVPLLQSRKNE 136
           G  +I+LGFY VMWGKA EE ++      +E     K PLL S KN+
Sbjct: 315 GGILITLGFYVVMWGKANEEKNKLLSFSGKE-----KTPLLLSGKND 356

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 7/92 (7%)

Query: 45  FVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG 104
           + ++ + V   GPV++A+F+PLSI IAV MG +FLGD  YLGSLVG  +ISLGFYTVMWG
Sbjct: 269 YAIHLWAVRNKGPVYLAIFRPLSILIAVIMGAIFLGDSFYLGSLVGGILISLGFYTVMWG 328

Query: 105 KAKEEVSEDPGVDRQESAAAQKVPLLQSRKNE 136
           KAKE          Q  + +++ PLL    ++
Sbjct: 329 KAKEG-------KTQFLSLSEETPLLDENIDD 353

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 69/97 (71%), Gaps = 7/97 (7%)

Query: 40  MSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFY 99
           +S F  + +++G+   GPV++++F+PLSIAIAVAMG +FLGD L+LGS++G+ I+ +GFY
Sbjct: 272 VSLFSALTHTWGLHLKGPVYISLFRPLSIAIAVAMGAIFLGDALHLGSVIGSMILCIGFY 331

Query: 100 TVMWGKAKEEVSEDPGVDRQESAAAQKVPLLQSRKNE 136
           TV+WGKA+E+         +  A +++ PLL +   E
Sbjct: 332 TVIWGKARED-------TIKTVAGSEQSPLLLTHIIE 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 64/91 (70%), Gaps = 2/91 (2%)

Query: 45  FVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG 104
           +V++++ V+  GPV+++MFKPLSI IA     +FLG+ LYLGS++G  +IS+GFY V+WG
Sbjct: 251 YVIHTWAVSHKGPVYLSMFKPLSILIAAVSTFIFLGESLYLGSVMGGILISIGFYMVLWG 310

Query: 105 KAKEEVSEDPGVDRQESAAAQKVPLLQSRKN 135
           KAKE+  +  G    ES+ +   PLL + K+
Sbjct: 311 KAKEDKVDIIG--AIESSPSHNAPLLDNFKS 339

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 5/101 (4%)

Query: 30  TLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLV 89
           TL    T   ++   +V++S+ V   GP+++A+FKPLSI IAV M  +FL D LYLG L+
Sbjct: 255 TLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMSAVFLNDSLYLGCLI 314

Query: 90  GATIISLGFYTVMWGKAKEEVSEDPGVDRQESAAAQKVPLL 130
           G  +I+LGFY VMWGKA EE  +   V  +E     + PLL
Sbjct: 315 GGLLITLGFYAVMWGKANEEKDQLLLVSGKE-----RTPLL 350

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 63/85 (74%), Gaps = 10/85 (11%)

Query: 46  VVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK 105
           V++++G+   GPV++++FKPLSIAIAVAM  +FLGD L+LGS++G+ I+S GFYTV+WGK
Sbjct: 262 VIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHLGSVIGSVILSFGFYTVIWGK 321

Query: 106 AKEEVSED----------PGVDRQE 120
           A+E+ ++           P  DR+E
Sbjct: 322 AREDSTKTVSDSEQSLLLPSHDREE 346

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 5/117 (4%)

Query: 25  NVGLNTLFKAATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDR 82
            +G+++   AA   G+  S   + + S  +   GPVF   F P+ + I   +G + L ++
Sbjct: 243 KIGMDSGTLAAVYSGVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLAEK 302

Query: 83  LYLGSLVGATIISLGFYTVMWGKAKEEVSEDPGVDRQESAAAQKVPLLQSRKNELEH 139
           ++LGS++GA  I LG Y+V+WGK+K+EV+    +D +  A +Q++P+    K    H
Sbjct: 303 IHLGSIIGAVFIVLGLYSVVWGKSKDEVNP---LDEKIVAKSQELPITNVVKQTNGH 356

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
255552664	419	Auxin-induced protein 5NG4, putative [Ri	0.584	0.198	0.747	3e-30
356495907	367	PREDICTED: auxin-induced protein 5NG4-li	0.809	0.313	0.558	2e-25
358248788	371	uncharacterized protein LOC100814137 [Gl	0.816	0.312	0.549	5e-25
296087699	345	unnamed protein product [Vitis vinifera]	0.633	0.260	0.6	1e-24
225452526	360	PREDICTED: auxin-induced protein 5NG4 [V	0.633	0.25	0.6	2e-24
147778870	671	hypothetical protein VITISV_027749 [Viti	0.633	0.134	0.6	2e-24
356550026	372	PREDICTED: auxin-induced protein 5NG4-li	0.605	0.231	0.640	2e-24
356571529	366	PREDICTED: auxin-induced protein 5NG4-li	0.626	0.243	0.615	4e-24
296087698	344	unnamed protein product [Vitis vinifera]	0.683	0.281	0.608	1e-23
225452524	359	PREDICTED: auxin-induced protein 5NG4 [V	0.683	0.270	0.608	1e-23

>gi|255552664|ref|XP_002517375.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223543386|gb|EEF44917.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/91 (74%), Positives = 78/91 (85%)

Query: 47  VYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106
           V+++ +   GPVFVAMFKPLSIAIAVAMGVMFLGD L+LGSL+GATIIS+GFYTVMWGKA
Sbjct: 328 VHTWALHLKGPVFVAMFKPLSIAIAVAMGVMFLGDALHLGSLIGATIISIGFYTVMWGKA 387

Query: 107 KEEVSEDPGVDRQESAAAQKVPLLQSRKNEL 137
           KEEV ED G    +S +AQKVPLLQS K+EL
Sbjct: 388 KEEVIEDYGGSSLQSPSAQKVPLLQSYKDEL 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495907|ref|XP_003516812.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 85/120 (70%), Gaps = 5/120 (4%)

Query: 26  VGLNTLFKAATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRL 83
           +G++T   +    G+  S    VV+++ +   GPV+VAMFKPLSIAIAVA+GVMFLGD L
Sbjct: 246 IGVDTALASIVCSGIFGSFVNNVVHTWVLRIKGPVYVAMFKPLSIAIAVALGVMFLGDTL 305

Query: 84  YLGSLVGATIISLGFYTVMWGKAKEE-VSEDPGVDRQESAAAQKVPLLQSRKNELEHGRM 142
           +LGS+VGATIIS+GFYTVMWGKA EE V ED  V  Q+S   + VPLLQS K +    +M
Sbjct: 306 HLGSIVGATIISIGFYTVMWGKATEENVGED--VPGQQSPTTENVPLLQSCKTDTAEKKM 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248788|ref|NP_001239940.1| uncharacterized protein LOC100814137 [Glycine max] gi|255641164|gb|ACU20859.1| unknown [Glycine max]

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 84/122 (68%), Gaps = 6/122 (4%)

Query: 25  NVGLNTLFKAATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDR 82
            +GL+T   +    G+  S     V+++ +   GPV+VAMFKPLSIAIAVA+GVMFLGD 
Sbjct: 248 KIGLDTALASIVCSGIFGSFVNNAVHTWVLRIKGPVYVAMFKPLSIAIAVALGVMFLGDT 307

Query: 83  LYLGSLVGATIISLGFYTVMWGKAKEE-VSED-PGVDRQESAAAQKVPLLQSRKNELEHG 140
           L+LGSLVGAT+IS+GFYTVMWGKA EE V ED PG  +Q     + VPLLQS K +    
Sbjct: 308 LHLGSLVGATVISIGFYTVMWGKATEENVDEDVPG--QQSPPTTENVPLLQSYKTDTAEK 365

Query: 141 RM 142
           +M
Sbjct: 366 KM 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087699|emb|CBI34955.3| unnamed protein product [Vitis vinifera]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 71/90 (78%)

Query: 47  VYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106
           ++++ +   GPV+VAMFKPL+I IAV MGV  LGD LYLGS++GATII++GFYTVMWGKA
Sbjct: 254 IHTWAIRMKGPVYVAMFKPLAIIIAVTMGVALLGDSLYLGSVIGATIITMGFYTVMWGKA 313

Query: 107 KEEVSEDPGVDRQESAAAQKVPLLQSRKNE 136
           +E++ ED  +   ES +AQK PLLQ+ K E
Sbjct: 314 QEDMVEDCTIGSLESPSAQKAPLLQNYKTE 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452526|ref|XP_002279762.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 71/90 (78%)

Query: 47  VYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106
           ++++ +   GPV+VAMFKPL+I IAV MGV  LGD LYLGS++GATII++GFYTVMWGKA
Sbjct: 269 IHTWAIRMKGPVYVAMFKPLAIIIAVTMGVALLGDSLYLGSVIGATIITMGFYTVMWGKA 328

Query: 107 KEEVSEDPGVDRQESAAAQKVPLLQSRKNE 136
           +E++ ED  +   ES +AQK PLLQ+ K E
Sbjct: 329 QEDMVEDCTIGSLESPSAQKAPLLQNYKTE 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778870|emb|CAN62735.1| hypothetical protein VITISV_027749 [Vitis vinifera]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 71/90 (78%)

Query: 47  VYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106
           ++++ +   GPV+VAMFKPL+I IAV MGV  LGD LYLGS++GATII++GFYTVMWGKA
Sbjct: 580 IHTWAIRMKGPVYVAMFKPLAIIIAVTMGVALLGDSLYLGSVIGATIITMGFYTVMWGKA 639

Query: 107 KEEVSEDPGVDRQESAAAQKVPLLQSRKNE 136
           +E++ ED  +   ES +AQK PLLQ+ K E
Sbjct: 640 QEDMVEDCTIGSLESPSAQKAPLLQNYKTE 669

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550026|ref|XP_003543391.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 71/89 (79%), Gaps = 3/89 (3%)

Query: 47  VYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106
           +Y++G+   GPV+VAMFKPLSI IAVAMGVMFLGD LY+GS++GATIIS+GFYTVMWGKA
Sbjct: 270 IYAWGIHLKGPVYVAMFKPLSIVIAVAMGVMFLGDSLYVGSIIGATIISIGFYTVMWGKA 329

Query: 107 KEE---VSEDPGVDRQESAAAQKVPLLQS 132
            E+     E+  V  QES+  + +PLLQS
Sbjct: 330 TEQKEEEEEEENVGSQESSITENIPLLQS 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571529|ref|XP_003553929.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 68/91 (74%), Gaps = 2/91 (2%)

Query: 46  VVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK 105
           VVY++ +   GPV+V  FKPL I IAVAMGVMFL D LY+GS+VGATI+S+G Y V+WGK
Sbjct: 272 VVYAWALYLKGPVYVTSFKPLQIVIAVAMGVMFLDDSLYIGSVVGATIVSIGLYAVLWGK 331

Query: 106 AKEEVSEDPGVDRQESAAAQKVPLLQSRKNE 136
           AKEE+ ED G   QES   + VPLLQS + E
Sbjct: 332 AKEEIEEDVG--SQESPTIENVPLLQSHRTE 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087698|emb|CBI34954.3| unnamed protein product [Vitis vinifera]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 71/97 (73%)

Query: 41  SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYT 100
           S F  VV ++ V   GPV+VAMF PLSI IA AMGVMFLGD LYLGS++GA +IS+GFY 
Sbjct: 248 SAFGMVVPTWVVRLKGPVYVAMFNPLSIVIATAMGVMFLGDTLYLGSIIGAIVISIGFYI 307

Query: 101 VMWGKAKEEVSEDPGVDRQESAAAQKVPLLQSRKNEL 137
           V WGKAKEE  ED GV   ES +  K+PLL S ++E+
Sbjct: 308 VTWGKAKEETIEDFGVGSLESLSNPKIPLLLSCQSEV 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452524|ref|XP_002279776.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 71/97 (73%)

Query: 41  SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYT 100
           S F  VV ++ V   GPV+VAMF PLSI IA AMGVMFLGD LYLGS++GA +IS+GFY 
Sbjct: 263 SAFGMVVPTWVVRLKGPVYVAMFNPLSIVIATAMGVMFLGDTLYLGSIIGAIVISIGFYI 322

Query: 101 VMWGKAKEEVSEDPGVDRQESAAAQKVPLLQSRKNEL 137
           V WGKAKEE  ED GV   ES +  K+PLL S ++E+
Sbjct: 323 VTWGKAKEETIEDFGVGSLESLSNPKIPLLLSCQSEV 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.647	0.250	0.553	8.4e-41
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.492	0.189	0.628	8.9e-21
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.711	0.280	0.467	4.9e-20
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.718	0.284	0.457	4.3e-19
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.528	0.216	0.526	1.7e-18
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.450	0.180	0.640	6e-18
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.732	0.306	0.415	2.2e-17
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.563	0.226	0.512	4.9e-17
TAIR|locus:2020688	375	UMAMIT36 "AT1G70260" [Arabidop	0.464	0.176	0.363	6.7e-15
TAIR|locus:2202745	374	UMAMIT35 "AT1G60050" [Arabidop	0.528	0.200	0.333	4.7e-13

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
 Identities = 57/103 (55%), Positives = 77/103 (74%)

Query:    47 VYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106
             ++++ +   GP+FVAMFKPLSIAIAVAMGV+FL D LY+GSL+GAT+I++GFYTVMWGKA
Sbjct:   265 IHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLYIGSLIGATVITIGFYTVMWGKA 324

Query:   107 KEE--VSEDPGVDRQES--------AAAQKVPLLQSRKNELEH 139
             KE   V +D   + +E+        + +QK PLL+S KN+ EH
Sbjct:   325 KEVALVEDDNKANHEEANEADLDSPSGSQKAPLLESYKND-EH 366

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.9e-21, P = 8.9e-21
 Identities = 44/70 (62%), Positives = 61/70 (87%)

Query:    40 MSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFY 99
             +S F  V++++G+   GPV++++FKPLSI IAVAMGVMFLGD LYLGS++G+ I+SLGFY
Sbjct:   273 VSSFGSVIHTWGLHLKGPVYISLFKPLSIVIAVAMGVMFLGDALYLGSVIGSLILSLGFY 332

Query:   100 TVMWGKAKEE 109
             TV+WGKA+E+
Sbjct:   333 TVIWGKARED 342

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.9e-20, P = 4.9e-20
 Identities = 50/107 (46%), Positives = 69/107 (64%)

Query:    30 TLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLV 89
             TL    T   ++   +V++S+ V   GP+++A+FKPLSI IAV MG +FL D LYLG L+
Sbjct:   258 TLITIVTMAIVTSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLI 317

Query:    90 GATIISLGFYTVMWGKAKEEVSEDPGVDRQESAAAQKVPLLQSRKNE 136
             G  +I+LGFY VMWGKA EE       D+   +  +K PLL +RKN+
Sbjct:   318 GGILITLGFYAVMWGKANEEK------DQLSFSEKEKTPLLLNRKND 358

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 4.3e-19, P = 4.3e-19
 Identities = 49/107 (45%), Positives = 69/107 (64%)

Query:    30 TLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLV 89
             TLF   T+  ++   +V++S+ +    P+++A+FKPLSI IAV MG +FL D LYLG L+
Sbjct:   255 TLFTIVTTGIITSVYYVIHSWAIRHKRPLYLAIFKPLSILIAVVMGTIFLNDSLYLGCLI 314

Query:    90 GATIISLGFYTVMWGKAKEEVSEDPGVDRQESAAAQKVPLLQSRKNE 136
             G  +I+LGFY VMWGKA EE ++      +E     K PLL S KN+
Sbjct:   315 GGILITLGFYVVMWGKANEEKNKLLSFSGKE-----KTPLLLSGKND 356

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 40/76 (52%), Positives = 62/76 (81%)

Query:    46 VVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK 105
             V++++G+   GPV++++FKPLSIAIAVAM  +FLGD L+LGS++G+ I+S GFYTV+WGK
Sbjct:   262 VIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHLGSVIGSVILSFGFYTVIWGK 321

Query:   106 AKEEVSEDPGVDRQES 121
             A+E+ ++    D ++S
Sbjct:   322 AREDSTKTVS-DSEQS 336

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 6.0e-18, P = 6.0e-18
 Identities = 41/64 (64%), Positives = 51/64 (79%)

Query:    45 FVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG 104
             + ++ + V   GPV++A+F+PLSI IAV MG +FLGD  YLGSLVG  +ISLGFYTVMWG
Sbjct:   269 YAIHLWAVRNKGPVYLAIFRPLSILIAVIMGAIFLGDSFYLGSLVGGILISLGFYTVMWG 328

Query:   105 KAKE 108
             KAKE
Sbjct:   329 KAKE 332

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 44/106 (41%), Positives = 69/106 (65%)

Query:    30 TLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLV 89
             TL     +  ++   +V++++ V+  GPV+++MFKPLSI IA     +FLG+ LYLGS++
Sbjct:   236 TLITVVATGILNSGYYVIHTWAVSHKGPVYLSMFKPLSILIAAVSTFIFLGESLYLGSVM 295

Query:    90 GATIISLGFYTVMWGKAKEEVSEDPGVDRQESAAAQKVPLLQSRKN 135
             G  +IS+GFY V+WGKAKE+  +  G    ES+ +   PLL + K+
Sbjct:   296 GGILISIGFYMVLWGKAKEDKVDIIGAI--ESSPSHNAPLLDNFKS 339

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 4.9e-17, P = 4.9e-17
 Identities = 41/80 (51%), Positives = 55/80 (68%)

Query:    30 TLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLV 89
             TL    T   ++   +V++S+ V   GP+++A+FKPLSI IAV M  +FL D LYLG L+
Sbjct:   255 TLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMSAVFLNDSLYLGCLI 314

Query:    90 GATIISLGFYTVMWGKAKEE 109
             G  +I+LGFY VMWGKA EE
Sbjct:   315 GGLLITLGFYAVMWGKANEE 334

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2020688 UMAMIT36 "AT1G70260" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query:    56 GPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVSEDPG 115
             GP +V +FKP  I  A   G  F  + L+ GS++GA I  +G++TV WG+ KE   +   
Sbjct:   285 GPYYVPLFKPFGIFWATLFGTSFFVNSLHYGSVLGAAIAGVGYFTVSWGQLKESEEKQSS 344

Query:   116 VDRQES 121
              + ++S
Sbjct:   345 NEERKS 350

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2202745 UMAMIT35 "AT1G60050" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query:    56 GPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA-KEEVSE-- 112
             GP +V +FKP  I  A   G  F  + L+ GS++GA I   G+  +MW +  K++ +E  
Sbjct:   288 GPYYVPLFKPFGILWASIFGTSFFVNSLHYGSVLGAAIAGTGYLLIMWSQVQKDDPNETV 347

Query:   113 DPGVDRQESAAAQKVPLL 130
             +   + Q  +  Q  PLL
Sbjct:   348 EKNDNHQLDSDEQTTPLL 365

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020780001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (360 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	3e-25
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	6e-07
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	0.004

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 97.7 bits (243), Expect = 3e-25
 Identities = 49/107 (45%), Positives = 67/107 (62%), Gaps = 5/107 (4%)

Query: 30  TLFKAATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLV 89
           TL    T   ++   +V++S+ V   GP+++A+FKPLSI IAV MG +FL D LYLG L+
Sbjct: 255 TLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLI 314

Query: 90  GATIISLGFYTVMWGKAKEEVSEDPGVDRQESAAAQKVPLLQSRKNE 136
           G  +I+LGFY VMWGKA EE  +      +E     K PLL + KN+
Sbjct: 315 GGILITLGFYAVMWGKANEEKDQLLSFSGKE-----KTPLLLNGKND 356

Length = 358

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 46.9 bits (111), Expect = 6e-07
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 8/98 (8%)

Query: 1  MAGPGRYCCKDVLPFTATVAMECINVGLNTLFKAATSKGMSHFVFVVYSYGVAALGPVFV 60
          MAG      ++ +  TA +A E   VG++TLFK ATSKG++ + F+ YSY +A+L  +  
Sbjct: 1  MAGTVSLWRREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPS 60

Query: 61 AMFK-------PLSIAIAVAMGVM-FLGDRLYLGSLVG 90
            F        PLS++I   +G++ FLG    +   +G
Sbjct: 61 LFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIG 98

Length = 358

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 45  FVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG 104
           ++++ Y +  LG   VA+   L    A  +GV+ LG+ L    L+GA ++ LG       
Sbjct: 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288

Query: 105 KAKE 108
             + 
Sbjct: 289 ARRR 292

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PLN00411	358	nodulin MtN21 family protein; Provisional	99.7
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.29
PRK11689	295	aromatic amino acid exporter; Provisional	99.18
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.17
PLN00411	358	nodulin MtN21 family protein; Provisional	99.15
PRK11272	292	putative DMT superfamily transporter inner membran	99.04
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.96
PRK15430	296	putative chloramphenical resistance permease RarD;	98.91
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.9
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.89
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.79
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.71
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.59
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.51
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.47
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.42
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.28
COG2510	140	Predicted membrane protein [Function unknown]	98.23
PRK15430	296	putative chloramphenical resistance permease RarD;	98.14
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.09
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.04
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.04
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.95
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.86
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.83
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.77
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.72
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.66
PRK11272	292	putative DMT superfamily transporter inner membran	97.63
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.58
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.58
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.44
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.43
PRK11689	295	aromatic amino acid exporter; Provisional	97.4
COG2076	106	EmrE Membrane transporters of cations and cationic	97.3
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.25
PRK11431	105	multidrug efflux system protein; Provisional	97.21
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.15
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	96.76
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.65
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.59
COG2962	293	RarD Predicted permeases [General function predict	96.58
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.55
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.5
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	96.29
COG2962	293	RarD Predicted permeases [General function predict	96.26
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.25
KOG1580	337	consensus UDP-galactose transporter related protei	96.2
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	95.41
KOG4510	346	consensus Permease of the drug/metabolite transpor	94.67
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	94.65
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	94.54
KOG2765	416	consensus Predicted membrane protein [Function unk	93.91
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	93.32
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	92.83
KOG2765	416	consensus Predicted membrane protein [Function unk	92.07
KOG1581	327	consensus UDP-galactose transporter related protei	91.53
KOG1582	367	consensus UDP-galactose transporter related protei	91.43
PRK10532	293	threonine and homoserine efflux system; Provisiona	90.9
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	90.82
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	90.15
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	89.04
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	88.79
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	88.41
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	85.94
KOG4831	125	consensus Unnamed protein [Function unknown]	85.35
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	82.85
PRK13499	345	rhamnose-proton symporter; Provisional	82.78
PF04246	135	RseC_MucC: Positive regulator of sigma(E), RseC/Mu	81.0
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	80.31

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.70  E-value=4e-17  Score=138.94  Aligned_cols=96  Identities=48%  Similarity=0.855  Sum_probs=83.7

Q ss_pred             HHHhch-hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccccccCC
Q 040176           35 ATSKGM-SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVSED  113 (142)
Q Consensus        35 ~l~~Gi-S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~~~  113 (142)
                      ++|.|+ +.++|.+|+|+++++||+++|++.|++|++++++|++++||++++.+++|+++|+.|++++.|.|++|.+.++
T Consensus       259 i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~  338 (358)
T PLN00411        259 IVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQL  338 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Confidence            556666 6789999999999999999999999999999999999999999999999999999999999997766644333


Q ss_pred             CCCCcccCcccccccccccccc
Q 040176          114 PGVDRQESAAAQKVPLLQSRKN  135 (142)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~  135 (142)
                      ..+    +| +||.|++.||+|
T Consensus       339 ~~~----~~-~~~~~~~~~~~~  355 (358)
T PLN00411        339 LSF----SG-KEKTPLLLNGKN  355 (358)
T ss_pred             cCc----cc-cccchhhhhccc
Confidence            332    34 888999999988

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.29  E-value=1.1e-11  Score=101.67  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=71.0

Q ss_pred             HHHhch--hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccccccC
Q 040176           35 ATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVSE  112 (142)
Q Consensus        35 ~l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~~  112 (142)
                      .+|.|+  |.++|.+|++++++.+|+.+|.+.+++|+++.++|++++||+++..+++|++++++|+++..++++++.|-|
T Consensus       211 ~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~  290 (293)
T PRK10532        211 GLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIK  290 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            357777  899999999999999999999999999999999999999999999999999999999999988776654444

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.18  E-value=6.3e-11  Score=97.18  Aligned_cols=72  Identities=11%  Similarity=0.183  Sum_probs=65.8

Q ss_pred             HHHhch-hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176           35 ATSKGM-SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA  106 (142)
Q Consensus        35 ~l~~Gi-S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~  106 (142)
                      .++.|+ +.++|.+|++++++.+|+.++.+.+++|+++.+++++++||+++..+++|+++|+.|+++..+.++
T Consensus       218 l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~  290 (295)
T PRK11689        218 LLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR  290 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence            345555 889999999999999999999999999999999999999999999999999999999998876543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.17  E-value=8.9e-11  Score=96.34  Aligned_cols=75  Identities=17%  Similarity=0.228  Sum_probs=69.5

Q ss_pred             HHHHHHhch--hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176           32 FKAATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA  106 (142)
Q Consensus        32 ~~~~l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~  106 (142)
                      +...+|.|+  +.++|.+|.+++++.+|+.++.+.+++|+++.++|++++||++++.+++|++++++|+++..|.++
T Consensus       214 ~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        214 ILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            445667777  899999999999999999999999999999999999999999999999999999999999888664

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.15  E-value=2.7e-10  Score=97.21  Aligned_cols=96  Identities=28%  Similarity=0.499  Sum_probs=84.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhh-------------------------------------
Q 040176           11 DVLPFTATVAMECINVGLNTLFKAATSKGMSHFVFVVYSYGVA-------------------------------------   53 (142)
Q Consensus        11 ~~~~~~~m~~~Q~~~ag~~ll~~~~l~~GiS~la~~l~~~~i~-------------------------------------   53 (142)
                      +.+||++|+++|+.|+|+++++|.++..|++.+.+..||+++.                                     
T Consensus        11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~   90 (358)
T PLN00411         11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM   90 (358)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999988887777777775442                                     


Q ss_pred             ----------ccCchhhhhhhhHHHHHHHHHHHHH------hccccccchhhhhHHHHHHHHHHHhccc
Q 040176           54 ----------ALGPVFVAMFKPLSIAIAVAMGVMF------LGDRLYLGSLVGATIISLGFYTVMWGKA  106 (142)
Q Consensus        54 ----------~~gps~~s~~~~l~PV~a~ila~l~------LgE~l~l~~iiG~~lil~Gv~l~~~~k~  106 (142)
                                +++|+.+++..+..|++++++++++      ++|+++..+++|.++.++|+.++...++
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g  159 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHG  159 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccC
Confidence                      2468899999999999999999999      6999999999999999999998776554

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.04  E-value=6.4e-10  Score=90.97  Aligned_cols=74  Identities=19%  Similarity=0.230  Sum_probs=67.8

Q ss_pred             HHHHhch--hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccc
Q 040176           34 AATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAK  107 (142)
Q Consensus        34 ~~l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~  107 (142)
                      ..+|.|+  |.++|.+|++++++.+++.++.+.+++|+++.++++++++|++++.+++|+++++.|+++.++.+++
T Consensus       214 ~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        214 ALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4456666  8899999999999999999999999999999999999999999999999999999999998886553

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.96  E-value=5.8e-09  Score=72.74  Aligned_cols=92  Identities=21%  Similarity=0.423  Sum_probs=74.5

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHH------------------HHhch--hHHHHHHHHHhhhccCchhhhhhhhHHH
Q 040176            9 CKDVLPFTATVAMECINVGLNTLFKAA------------------TSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSI   68 (142)
Q Consensus         9 ~~~~~~~~~m~~~Q~~~ag~~ll~~~~------------------l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~P   68 (142)
                      .++.+|. .+...++..++. ++....                  ++.|.  +.+++.+|.+++++.+++.++.+.+++|
T Consensus        14 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p   91 (126)
T PF00892_consen   14 LKKISPL-SITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSP   91 (126)
T ss_pred             hccCCHH-HHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            3445555 677777777774 322221                  13333  6889999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccccchhhhhHHHHHHHHHHH
Q 040176           69 AIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVM  102 (142)
Q Consensus        69 V~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~  102 (142)
                      +++.++++++++|++++.+++|.++++.|++++.
T Consensus        92 v~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   92 VFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.91  E-value=3.9e-09  Score=86.61  Aligned_cols=69  Identities=12%  Similarity=0.245  Sum_probs=62.0

Q ss_pred             HHHhch-hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176           35 ATSKGM-SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW  103 (142)
Q Consensus        35 ~l~~Gi-S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~  103 (142)
                      .+..|+ +.++|.+|++++++.+|+.+|.+.+++|+++.++|+++++|++++.+++|+++|+.|+.+..-
T Consensus       216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            334454 889999999999999999999999999999999999999999999999999999888776543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.90  E-value=2.5e-09  Score=87.53  Aligned_cols=65  Identities=14%  Similarity=0.242  Sum_probs=59.1

Q ss_pred             HHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccccccc
Q 040176           47 VYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVS  111 (142)
Q Consensus        47 l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~  111 (142)
                      ++.+++++.||+.++++.++.|++++++|++++||+++..+++|+++++.|++++++.|.+++++
T Consensus       237 ~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~  301 (302)
T TIGR00817       237 VAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP  301 (302)
T ss_pred             HHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence            33478999999999999999999999999999999999999999999999999999877655554

specificities overlap.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.89  E-value=2.4e-08  Score=74.50  Aligned_cols=73  Identities=16%  Similarity=0.230  Sum_probs=65.3

Q ss_pred             HHHhch--hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHH--HhccccccchhhhhHHHHHHHHHHHhcccc
Q 040176           35 ATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVM--FLGDRLYLGSLVGATIISLGFYTVMWGKAK  107 (142)
Q Consensus        35 ~l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l--~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~  107 (142)
                      .++.|+  ..++|.+|.+++++.+.+.+..+..+.+++..++++.  +++|++++.+++|.++|++|++++++.+++
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            456666  8899999999999999999999999999888888885  899999999999999999999998875554

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.79  E-value=9.6e-09  Score=83.52  Aligned_cols=60  Identities=28%  Similarity=0.467  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHH
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYT  100 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l  100 (142)
                      +.++|.+|.+++++.+++.++.+.+++|++++++|+++++|+++..+++|+++++.|+++
T Consensus       221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            889999999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.71  E-value=3.4e-08  Score=78.07  Aligned_cols=64  Identities=19%  Similarity=0.448  Sum_probs=59.6

Q ss_pred             HHHhch--hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHH
Q 040176           35 ATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGF   98 (142)
Q Consensus        35 ~l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv   98 (142)
                      .++.|+  +.++|.+|.+++++.+++.++.+.+++|+++.++++++++|+++..+++|.++++.|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       194 LLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            345555  7899999999999999999999999999999999999999999999999999999986

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.59  E-value=1.4e-07  Score=79.87  Aligned_cols=65  Identities=15%  Similarity=0.205  Sum_probs=62.0

Q ss_pred             hHHHHHHHHH----hhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176           41 SHFVFVVYSY----GVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK  105 (142)
Q Consensus        41 S~la~~l~~~----~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k  105 (142)
                      |.++|.+|++    ++++++|...+.+.++.|++++++|+++++|++++.+++|.++++.|++++++.|
T Consensus       282 s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        282 SGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence            8999999995    9999999999999999999999999999999999999999999999999988753

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.51  E-value=5e-07  Score=71.01  Aligned_cols=72  Identities=25%  Similarity=0.470  Sum_probs=65.0

Q ss_pred             HHHHHhch--hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhc
Q 040176           33 KAATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG  104 (142)
Q Consensus        33 ~~~l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~  104 (142)
                      ...++.|+  +.++|.+|.+++++.+++.++.+.++.|+++.++++++++|+++..+++|.++++.|+.+..+.
T Consensus       215 ~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         215 LLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            33445555  5579999999999999999999999999999999999999999999999999999999998876

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.47  E-value=3e-06  Score=61.44  Aligned_cols=62  Identities=10%  Similarity=0.047  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176           42 HFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW  103 (142)
Q Consensus        42 ~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~  103 (142)
                      .+++.+|.+++++.+.+.+.....+.++++.++|+++++|++++.+++|.+++++|+.++..
T Consensus        48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            45788899999999999999888899999999999999999999999999999999987654

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.42  E-value=1.5e-06  Score=62.10  Aligned_cols=65  Identities=17%  Similarity=0.346  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA  106 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~  106 (142)
                      ....+.+|.+++++.++ .++....+.|+++.++++++++|+++..+++|.+++++|+.++.+.+.
T Consensus        45 ~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   45 FGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            34779999999999985 888999999999999999999999999999999999999999988654

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.28  E-value=1.9e-05  Score=58.51  Aligned_cols=66  Identities=17%  Similarity=0.340  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176           41 SHFVFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA  106 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~  106 (142)
                      =.++|.++..++++++.+.+ +.+.-+--+.++++++++++|++++.+++|..+|+.|+...+...+
T Consensus        40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~  106 (120)
T PRK10452         40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR  106 (120)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence            45578888889988876655 4455688889999999999999999999999999999998866543

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.23  E-value=8.7e-07  Score=66.95  Aligned_cols=66  Identities=24%  Similarity=0.440  Sum_probs=59.0

Q ss_pred             hch-hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176           38 KGM-SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW  103 (142)
Q Consensus        38 ~Gi-S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~  103 (142)
                      .|+ +.++..+|..+++.-.++.+.-.--..|+++++++++||+|++++.+++|.++|.+|+.++.+
T Consensus        73 SGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          73 SGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            344 667788999999998899998888899999999999999999999999999999999877543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.14  E-value=3.2e-05  Score=63.49  Aligned_cols=63  Identities=13%  Similarity=0.285  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW  103 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~  103 (142)
                      ....+.+|.+++++.+++.+++..+..|++++++++++++|+++..+++|.++.+.|+.+..+
T Consensus        83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            445688999999999999999999999999999999999999999999999999999987654

>TIGR00688 rarD rarD protein

Probab=98.09  E-value=1.6e-05  Score=63.55  Aligned_cols=62  Identities=19%  Similarity=0.302  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176           42 HFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW  103 (142)
Q Consensus        42 ~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~  103 (142)
                      ...+.+|.+++++.++..++...+..|++++++++++++|+++..+++|.++.++|+.+...
T Consensus        81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999887654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.04  E-value=2e-05  Score=64.05  Aligned_cols=64  Identities=17%  Similarity=0.161  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhc
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG  104 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~  104 (142)
                      ....+.++.++.++.+++.++.+.+..|+++.++++++++|+++..+++|.++++.|+++..+.
T Consensus        73 ~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        73 NMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            5566778888999999999999999999999999999999999999999999999999987653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.04  E-value=1.7e-05  Score=62.60  Aligned_cols=63  Identities=16%  Similarity=0.060  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW  103 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~  103 (142)
                      ..+.+.++.+++++.+++.++....+.|+++.++++++++|+++..+++|.++.+.|+.+...
T Consensus        57 ~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        57 IGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             HHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            346677888999999999999999999999999999999999999999999999999988754

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.95  E-value=3.8e-05  Score=63.39  Aligned_cols=67  Identities=18%  Similarity=0.298  Sum_probs=61.7

Q ss_pred             hch-hHHHHHHHHHhhh-ccCchhhhhhhhHHHHHHHHHHHHHhccccccchh----hhhHHHHHHHHHHHhc
Q 040176           38 KGM-SHFVFVVYSYGVA-ALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSL----VGATIISLGFYTVMWG  104 (142)
Q Consensus        38 ~Gi-S~la~~l~~~~i~-~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~i----iG~~lil~Gv~l~~~~  104 (142)
                      .|+ ..++|.+|..+.+ +.+++.++....++|+++++.++++++|+.+..++    +|.++++.|+.+....
T Consensus       217 ~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       217 PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            555 7888999999999 99999999999999999999999999999999999    9999999999876543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.86  E-value=4.5e-05  Score=62.40  Aligned_cols=61  Identities=15%  Similarity=0.168  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHH
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTV  101 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~  101 (142)
                      ....+.++++++++.+++++++.....|+++.++++++++|+++..+++|.+++++|+.+.
T Consensus        75 ~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        75 HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            5566788999999999999999999999999999999999999999999999999999765

specificities overlap.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.83  E-value=0.00022  Score=58.55  Aligned_cols=94  Identities=14%  Similarity=0.259  Sum_probs=65.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHH---------HHHHhch--hHHHHHHHHHhhhc-cCchhhhhhhhHHHHHHHHHHHH
Q 040176           10 KDVLPFTATVAMECINVGLNTLFK---------AATSKGM--SHFVFVVYSYGVAA-LGPVFVAMFKPLSIAIAVAMGVM   77 (142)
Q Consensus        10 ~~~~~~~~m~~~Q~~~ag~~ll~~---------~~l~~Gi--S~la~~l~~~~i~~-~gps~~s~~~~l~PV~a~ila~l   77 (142)
                      ++..|. .+....+..++.-++..         ..+..|+  ....+.++..++++ .++..++...+..|+++.+++++
T Consensus        28 ~~~~p~-~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~  106 (299)
T PRK11453         28 HNMPPL-MLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAF  106 (299)
T ss_pred             hcCCHH-HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHH
Confidence            344555 66667766554433221         1222233  12233344556665 46788898999999999999999


Q ss_pred             HhccccccchhhhhHHHHHHHHHHHhc
Q 040176           78 FLGDRLYLGSLVGATIISLGFYTVMWG  104 (142)
Q Consensus        78 ~LgE~l~l~~iiG~~lil~Gv~l~~~~  104 (142)
                      +++|+++..+++|.++.++|+++..+.
T Consensus       107 ~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453        107 TFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            999999999999999999999887753

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.77  E-value=0.00067  Score=49.38  Aligned_cols=66  Identities=18%  Similarity=0.275  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176           41 SHFVFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA  106 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~  106 (142)
                      =.++|.++..++++++.+.+ +.+.-+--+.++++++++++|++++.+++|..+|+.|+...+..++
T Consensus        40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~  106 (110)
T PRK09541         40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR  106 (110)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            34568888888888876655 4556678888999999999999999999999999999999876543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.72  E-value=0.0001  Score=62.38  Aligned_cols=61  Identities=16%  Similarity=0.128  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHH
Q 040176           42 HFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVM  102 (142)
Q Consensus        42 ~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~  102 (142)
                      ...+...+.++++.+++++++...+.|++++++++++++|+++..+++|.++++.|+.+..
T Consensus       125 ~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        125 LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            3345556688899999999999999999999999999999999999999999999988764

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.66  E-value=0.00014  Score=53.14  Aligned_cols=63  Identities=10%  Similarity=0.238  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW  103 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~  103 (142)
                      +.+.-....+++++.+|...++..++-.++..++++++++|+++..+++|.++.+.|.++++|
T Consensus        91 ~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   91 AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            444445556789999999999999999999999999999999999999999999999987654

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.63  E-value=0.00069  Score=55.41  Aligned_cols=60  Identities=12%  Similarity=0.019  Sum_probs=52.9

Q ss_pred             HHHHHHHhh-hccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhc
Q 040176           44 VFVVYSYGV-AALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG  104 (142)
Q Consensus        44 a~~l~~~~i-~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~  104 (142)
                      .+.++.++. +..++..++...++.|+++.+++++ ++|+++..+++|.++.++|+++..+.
T Consensus        82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            456677777 7888889999999999999999986 69999999999999999999987654

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.58  E-value=0.00021  Score=59.68  Aligned_cols=76  Identities=17%  Similarity=0.158  Sum_probs=64.9

Q ss_pred             HHHHHhch--hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccc
Q 040176           33 KAATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKE  108 (142)
Q Consensus        33 ~~~l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~  108 (142)
                      ..++..|+  |.+-|.+=.-+++++++..-+....++|.++.+.++++|+|.+++.|++|.+.++.+..=.++.-+|+
T Consensus       210 ~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~  287 (292)
T COG5006         210 PLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP  287 (292)
T ss_pred             HHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence            34444555  88999999999999999999999999999999999999999999999999999998877555544443

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.58  E-value=0.00026  Score=55.55  Aligned_cols=67  Identities=16%  Similarity=0.290  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHH-HHhccccccchhhhhHHHHHHHHHHHhcccc
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGV-MFLGDRLYLGSLVGATIISLGFYTVMWGKAK  107 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~-l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~  107 (142)
                      .......|..++++.++..++...+..|+++.++++ ++++|+++..+++|.++.+.|++++.+....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            556677888899999999999999999999999997 7779999999999999999999998875544

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.44  E-value=0.00035  Score=59.73  Aligned_cols=69  Identities=14%  Similarity=0.226  Sum_probs=58.7

Q ss_pred             HHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccccccc
Q 040176           43 FVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVS  111 (142)
Q Consensus        43 la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~  111 (142)
                      .-|.+....++..+|++..........++.++++++.++++++..++|.++|+.|+++++...+++.++
T Consensus       245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~  313 (334)
T PF06027_consen  245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEA  313 (334)
T ss_pred             HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence            334555667788899999999999999999999999999999999999999999999988766555444

Some of the sequences in this family are annotated as putative membrane proteins.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.43  E-value=0.0013  Score=54.30  Aligned_cols=72  Identities=13%  Similarity=0.214  Sum_probs=63.3

Q ss_pred             HhchhHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccc
Q 040176           37 SKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKE  108 (142)
Q Consensus        37 ~~GiS~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~  108 (142)
                      +...+.++.....+++++.||...++...+--+++.++++++.++++++.+++|.++++.|+.+..+.|+|+
T Consensus       231 ~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  231 FSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            333366666677788999999999999999999999999999999999999999999999999988877664

; GO: 0055085 transmembrane transport

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.40  E-value=0.00058  Score=56.01  Aligned_cols=51  Identities=20%  Similarity=0.214  Sum_probs=46.2

Q ss_pred             ccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhc
Q 040176           54 ALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG  104 (142)
Q Consensus        54 ~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~  104 (142)
                      ..++..++...++.|+++.++++++++|+++..+++|.++.++|+++....
T Consensus        88 ~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         88 RRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             cccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            456778889999999999999999999999999999999999999887653

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.30  E-value=0.0011  Score=48.36  Aligned_cols=64  Identities=22%  Similarity=0.381  Sum_probs=53.2

Q ss_pred             HHHHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176           42 HFVFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK  105 (142)
Q Consensus        42 ~la~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k  105 (142)
                      .++|.+...+++++.-..+ +.|.-+-.+.+++.++++++|++++.+++|..++++|+...++..
T Consensus        41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s  105 (106)
T COG2076          41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS  105 (106)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence            3557778888888764443 677778888999999999999999999999999999999877643

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.25  E-value=0.0069  Score=44.13  Aligned_cols=62  Identities=21%  Similarity=0.347  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHH
Q 040176           41 SHFVFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVM  102 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~  102 (142)
                      -.++|.+...++++++...+ +.+.-+-.+.+++.++++++|++++.+++|..+++.|+...+
T Consensus        45 ~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         45 VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            34567788888888775544 667778888999999999999999999999999999998764

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.21  E-value=0.0015  Score=47.19  Aligned_cols=63  Identities=14%  Similarity=0.237  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176           41 SHFVFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW  103 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~  103 (142)
                      =.++|.+...++++++...+ +.|.-+-.+.+++.++++.+|++++.+++|..+++.|+...+.
T Consensus        39 ~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         39 MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            34567778888887765544 6677788899999999999999999999999999999988654

>TIGR00688 rarD rarD protein

Probab=97.15  E-value=0.00097  Score=53.20  Aligned_cols=46  Identities=7%  Similarity=0.105  Sum_probs=40.5

Q ss_pred             HHHHHhch-hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHH
Q 040176           33 KAATSKGM-SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMF   78 (142)
Q Consensus        33 ~~~l~~Gi-S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~   78 (142)
                      ..+++.|+ +.++|.+|++++++.+|+.++.+.|++|++++++|++.
T Consensus       209 ~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       209 LLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            44445555 88999999999999999999999999999999999864

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=96.76  E-value=0.0073  Score=49.19  Aligned_cols=73  Identities=12%  Similarity=0.232  Sum_probs=58.9

Q ss_pred             HHhchhHHHHHHHH----HhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccc
Q 040176           36 TSKGMSHFVFVVYS----YGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKE  108 (142)
Q Consensus        36 l~~GiS~la~~l~~----~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~  108 (142)
                      +..++..+.|.++|    .+++++.|+.--+....-.++|.++++++|+.+++..|+++..+.++|+.++.......
T Consensus        18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            33344444454444    45677899999999999999999999999999999999999999999999887765544

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.65  E-value=0.006  Score=52.21  Aligned_cols=64  Identities=16%  Similarity=0.144  Sum_probs=54.1

Q ss_pred             HHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccc
Q 040176           44 VFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAK  107 (142)
Q Consensus        44 a~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~  107 (142)
                      +-.++..+.++++.+.+.+..-..-+++.++++++|+++.++.|++|.+++++|+.++.+....
T Consensus        92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~  155 (334)
T PF06027_consen   92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL  155 (334)
T ss_pred             HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence            3445566677788888888888899999999999999999999999999999999988776533

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.59  E-value=0.0011  Score=56.01  Aligned_cols=63  Identities=13%  Similarity=0.117  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhc
Q 040176           42 HFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG  104 (142)
Q Consensus        42 ~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~  104 (142)
                      ..+-.+..++..+++-+-++..+...|+|+.++||++|+|+.+....+|.++.+.|+.++.|.
T Consensus       108 ~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP  170 (346)
T KOG4510|consen  108 FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP  170 (346)
T ss_pred             hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence            344455566667777777788888999999999999999999999999999999999887653

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.58  E-value=0.0081  Score=50.72  Aligned_cols=73  Identities=11%  Similarity=0.172  Sum_probs=66.0

Q ss_pred             HHHHHhch-hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176           33 KAATSKGM-SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK  105 (142)
Q Consensus        33 ~~~l~~Gi-S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k  105 (142)
                      ....-.|+ |.+...+|..+-+++.=+..+...|+.|..-+++|+++.+|+++..+.+.-++|-+|+.++.+..
T Consensus       212 ~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~  285 (293)
T COG2962         212 LLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG  285 (293)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566 99999999999999999999999999999999999999999999999999999999998877654

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.55  E-value=0.0067  Score=42.41  Aligned_cols=54  Identities=26%  Similarity=0.410  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhccccccchhhhhHHH
Q 040176           41 SHFVFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATII   94 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~li   94 (142)
                      -.++|.++.+++++...+.+ +.+.-+-.+.++++++++.+|++++.+++|..+|
T Consensus        39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            45668899999999877766 5666788899999999999999999999998775

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>TIGR00803 nst UDP-galactose transporter

Probab=96.50  E-value=0.001  Score=52.23  Aligned_cols=60  Identities=13%  Similarity=0.067  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHH
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYT  100 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l  100 (142)
                      +.....+-.+++++.+++..+....+.++++.++++++++|+++..+++|+.+++.|+++
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            334444556778889999999999999999999999999999999999999999998764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=96.29  E-value=0.006  Score=50.35  Aligned_cols=60  Identities=15%  Similarity=0.193  Sum_probs=52.6

Q ss_pred             HHHHHhhhccCchhhhhhhh-HHHHHHHHHHHHHhccccccch----hhhhHHHHHHHHHHHhcc
Q 040176           46 VVYSYGVAALGPVFVAMFKP-LSIAIAVAMGVMFLGDRLYLGS----LVGATIISLGFYTVMWGK  105 (142)
Q Consensus        46 ~l~~~~i~~~gps~~s~~~~-l~PV~a~ila~l~LgE~l~l~~----iiG~~lil~Gv~l~~~~k  105 (142)
                      ..|..++++.|.+.+-...+ +++++.++.+.++++|+.+..+    ++|.++++.|+++....+
T Consensus        74 ~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        74 INQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             hhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            77788899999988876666 8889999999999999999999    999999999998875543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.26  E-value=0.016  Score=49.03  Aligned_cols=64  Identities=14%  Similarity=0.213  Sum_probs=57.2

Q ss_pred             HHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176           43 FVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA  106 (142)
Q Consensus        43 la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~  106 (142)
                      .-..+|.|+++.--...+|.=++++|.+-+++|.+|++|+++..|++..++-.+|+..-.|..+
T Consensus        84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g  147 (293)
T COG2962          84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG  147 (293)
T ss_pred             HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence            3467888999988888999999999999999999999999999999999999999988777554

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.25  E-value=0.017  Score=47.65  Aligned_cols=71  Identities=15%  Similarity=0.204  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccccccc
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVS  111 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~  111 (142)
                      ..++-.+-++++++++...-.++....|+.+.++++++++++.+..++++.+++.+|+.+....+.+..+.
T Consensus        74 ~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~  144 (303)
T PF08449_consen   74 FFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS  144 (303)
T ss_pred             HHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence            44455667788888888888899999999999999999999999999999999999999988765444443

; GO: 0055085 transmembrane transport

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.20  E-value=0.02  Score=47.93  Aligned_cols=61  Identities=11%  Similarity=0.154  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHH
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTV  101 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~  101 (142)
                      |.++..+...-+...||...|+.+----.||++.++++.+++++.+||+|+++++.++..=
T Consensus       251 s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  251 SCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD  311 (337)
T ss_pred             HHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence            6666666666777889999999999999999999999999999999999999999998763

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=95.41  E-value=0.058  Score=39.68  Aligned_cols=68  Identities=10%  Similarity=0.082  Sum_probs=52.0

Q ss_pred             HHHHHhchhHHHHHHHHHhhhccCchhhhhh-hhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHH
Q 040176           33 KAATSKGMSHFVFVVYSYGVAALGPVFVAMF-KPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYT  100 (142)
Q Consensus        33 ~~~l~~GiS~la~~l~~~~i~~~gps~~s~~-~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l  100 (142)
                      +.++-..++..+-++|.+.+++..-+.+.-. +.+.-++|++.++++..|..+...++|++++++|+.+
T Consensus        43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            4444444577788899999998876665544 4677888999998766666677889999999999865

Many members are annotated as potential transmembrane proteins.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=94.67  E-value=0.025  Score=48.05  Aligned_cols=66  Identities=20%  Similarity=0.213  Sum_probs=55.6

Q ss_pred             Hhch-hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHH
Q 040176           37 SKGM-SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVM  102 (142)
Q Consensus        37 ~~Gi-S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~  102 (142)
                      ++|+ +.+...+...+++.--+-..|++.+..-+++++.-++|.+|.+|+++++|++++++......
T Consensus       258 ~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a  324 (346)
T KOG4510|consen  258 NLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA  324 (346)
T ss_pred             EehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence            5566 55666777778877677778999999999999999999999999999999999988766543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=94.65  E-value=0.15  Score=42.66  Aligned_cols=71  Identities=14%  Similarity=0.172  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHhhhccCchhhh-hhhhHHHHHHHHHHHHHhccccccch----hhhhHHHHHHHHHHHhcccccccc
Q 040176           41 SHFVFVVYSYGVAALGPVFVA-MFKPLSIAIAVAMGVMFLGDRLYLGS----LVGATIISLGFYTVMWGKAKEEVS  111 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s-~~~~l~PV~a~ila~l~LgE~l~l~~----iiG~~lil~Gv~l~~~~k~~~~~~  111 (142)
                      =.++-..+..+.++.|.+++. +.+-++=+.++++++++++|.-+..+    +++.++++.|+++..+.++++.+.
T Consensus        55 W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~  130 (269)
T PF06800_consen   55 WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKS  130 (269)
T ss_pred             HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            445666777888888887763 55667888899999999999888766    557789999999988876665544

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=94.54  E-value=0.0056  Score=52.14  Aligned_cols=63  Identities=13%  Similarity=0.199  Sum_probs=54.2

Q ss_pred             HHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccccccc
Q 040176           49 SYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVS  111 (142)
Q Consensus        49 ~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~  111 (142)
                      .+++++++|..-+....+=-++..+.+++++++++++.+++|.++.+.|++++++.|.+++++
T Consensus       253 f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~  315 (316)
T KOG1441|consen  253 FLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG  315 (316)
T ss_pred             HHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            367788888877777777777778889999999999999999999999999999998877665

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=93.91  E-value=0.22  Score=43.80  Aligned_cols=78  Identities=18%  Similarity=0.231  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccccccCCCCCCc
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVSEDPGVDR  118 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~~~~~~~~  118 (142)
                      +.++-.+|-|+.-..+|..++.-..++-=.+++...++-+...++..++|.+.|+.|.++++......++.+.+...+
T Consensus       328 tvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~~~~~~~~~r  405 (416)
T KOG2765|consen  328 TVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSKKDPLMAIER  405 (416)
T ss_pred             HHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccccccchheee
Confidence            778888999999889998887777777667899999999999999999999999999999998877766665555444

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=93.32  E-value=0.041  Score=45.13  Aligned_cols=59  Identities=14%  Similarity=0.243  Sum_probs=53.5

Q ss_pred             HHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhc
Q 040176           46 VVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG  104 (142)
Q Consensus        46 ~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~  104 (142)
                      +.|-.++++++|+.+|+..-....|..+++++.|+++.....++.+++-+.|+..+.+.
T Consensus        68 Y~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~  126 (290)
T KOG4314|consen   68 YLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA  126 (290)
T ss_pred             cHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence            47888999999999999999999999999999999999999999999999998766543

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=92.83  E-value=0.2  Score=42.03  Aligned_cols=49  Identities=27%  Similarity=0.447  Sum_probs=39.4

Q ss_pred             cCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176           55 LGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW  103 (142)
Q Consensus        55 ~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~  103 (142)
                      .+++.++-+.-+.-++..++|..+++|+++...++|.++++.|..+...
T Consensus        74 ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   74 APASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             hhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            3444555555566678899999999999999999999999999876543

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=92.07  E-value=0.08  Score=46.51  Aligned_cols=66  Identities=15%  Similarity=0.205  Sum_probs=57.3

Q ss_pred             HHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccc
Q 040176           43 FVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKE  108 (142)
Q Consensus        43 la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~  108 (142)
                      ++-..++-++++...+...+...-.-+|+.++|.+|.+|++++...++.++.++|+++++.++.+.
T Consensus       171 ~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  171 LANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            345678888888888888888889999999999999999999999999999999999887765443

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=91.53  E-value=0.46  Score=40.73  Aligned_cols=73  Identities=12%  Similarity=0.177  Sum_probs=57.3

Q ss_pred             HHHhchhHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccc
Q 040176           35 ATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAK  107 (142)
Q Consensus        35 ~l~~GiS~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~  107 (142)
                      ++|.-.+.++-.+-.+-+++-||..-++.+-.=-+++.+++.+..+.++++.+++|..+++.|+++-..-|.+
T Consensus       245 ~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  245 LLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             HHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            3344445555556666677788888888888888999999999999999999999999999999875544433

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=91.43  E-value=0.78  Score=39.30  Aligned_cols=54  Identities=15%  Similarity=0.347  Sum_probs=47.2

Q ss_pred             hhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176           52 VAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK  105 (142)
Q Consensus        52 i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k  105 (142)
                      ++--|+..++..+-.--.+|.++++++...+++..+.-|+++++.|+++-...|
T Consensus       281 I~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  281 IKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            344588888888888889999999999999999999999999999999977666

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=90.90  E-value=1.8  Score=35.36  Aligned_cols=57  Identities=7%  Similarity=0.030  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW  103 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~  103 (142)
                      ....+.++.+++++.+++.++......|+++.+++.    |+..  ...+..+.++|+++..+
T Consensus        81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLLP  137 (293)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheeee
Confidence            344566778899999999999999999999998873    5543  45567778888887653

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=90.82  E-value=0.84  Score=39.56  Aligned_cols=75  Identities=11%  Similarity=0.131  Sum_probs=59.3

Q ss_pred             HhchhHHHHHHHHH----hhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccccccc
Q 040176           37 SKGMSHFVFVVYSY----GVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVS  111 (142)
Q Consensus        37 ~~GiS~la~~l~~~----~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~  111 (142)
                      -.++..+.|.++|+    +..++.|+.-.....+=-..|.++..++|+++++..||...++...|+.++++...+.+..
T Consensus        94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a  172 (345)
T KOG2234|consen   94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA  172 (345)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence            33445566777775    3356788888888889999999999999999999999999999999999999554443333

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=90.15  E-value=0.066  Score=44.84  Aligned_cols=74  Identities=12%  Similarity=0.170  Sum_probs=55.6

Q ss_pred             HHHHHHHHhhhccCchhhh-hhhhHHHHHHHHHHHHHhccccccch----hhhhHHHHHHHHHHHhccccccccCCCCC
Q 040176           43 FVFVVYSYGVAALGPVFVA-MFKPLSIAIAVAMGVMFLGDRLYLGS----LVGATIISLGFYTVMWGKAKEEVSEDPGV  116 (142)
Q Consensus        43 la~~l~~~~i~~~gps~~s-~~~~l~PV~a~ila~l~LgE~l~l~~----iiG~~lil~Gv~l~~~~k~~~~~~~~~~~  116 (142)
                      ++...+.++++..|.+++. ..+-.+-+-+.+++++.++|.-+..+    .+..++++.|+++..|.++.++++++.-+
T Consensus        71 ~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n  149 (288)
T COG4975          71 FGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSN  149 (288)
T ss_pred             hhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHh
Confidence            4455566777788887774 44456778889999999999999988    45668899999998887776666554443

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=89.04  E-value=1.6  Score=37.87  Aligned_cols=49  Identities=16%  Similarity=0.251  Sum_probs=40.6

Q ss_pred             hhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccccc
Q 040176           62 MFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEV  110 (142)
Q Consensus        62 ~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~  110 (142)
                      ....+..+++.+.++.+.+-+++....+|+.+++..++++...+.++++
T Consensus       281 f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~~~  329 (345)
T KOG2234|consen  281 FSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARDAQ  329 (345)
T ss_pred             HHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccccc
Confidence            3444777889999999999999999999999999999998866655533

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.79  E-value=3  Score=30.48  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=28.6

Q ss_pred             HHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176           72 VAMGVMFLGDRLYLGSLVGATIISLGFYTVMW  103 (142)
Q Consensus        72 ~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~  103 (142)
                      +.++++.++|++.|.++.|.+++..|++++.+
T Consensus        84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            45699999999999999999999999998754

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=88.41  E-value=0.32  Score=35.63  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=26.9

Q ss_pred             HHHHHHHhccccccchhhhhHHHHHHHHHH
Q 040176           72 VAMGVMFLGDRLYLGSLVGATIISLGFYTV  101 (142)
Q Consensus        72 ~ila~l~LgE~l~l~~iiG~~lil~Gv~l~  101 (142)
                      +.+++++++|++++.++.|.++++.+++++
T Consensus        77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            566889999999999999999999998865

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=85.94  E-value=0.89  Score=38.83  Aligned_cols=52  Identities=13%  Similarity=0.356  Sum_probs=43.1

Q ss_pred             CchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHH--hcccc
Q 040176           56 GPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVM--WGKAK  107 (142)
Q Consensus        56 gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~--~~k~~  107 (142)
                      .+-.+++...+=-.+..+++.+...++.++.+++|+++++.|.++..  |.+.+
T Consensus       267 ~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~  320 (330)
T KOG1583|consen  267 SSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPK  320 (330)
T ss_pred             cceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            45566777778888999999999999999999999999999987654  55443

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=85.35  E-value=5.8  Score=29.42  Aligned_cols=82  Identities=17%  Similarity=0.230  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhhccCchhhhh-hhhHHHHHHHHHHHHHhccccccch-hhhhHHHH
Q 040176           18 TVAMECINVGLNTLFKAATSKGMSHFVFVVYSYGVAALGPVFVAM-FKPLSIAIAVAMGVMFLGDRLYLGS-LVGATIIS   95 (142)
Q Consensus        18 m~~~Q~~~ag~~ll~~~~l~~GiS~la~~l~~~~i~~~gps~~s~-~~~l~PV~a~ila~l~LgE~l~l~~-iiG~~lil   95 (142)
                      |.++|=. -.+.+.+...+=-+++..+-.+|.+-+++.+-+.+.= -+.+..+|+.+.+. .|||++..+. ++|+.+++
T Consensus        40 ~~~lqe~-~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~-~LGE~~~g~~a~lGt~liv  117 (125)
T KOG4831|consen   40 MIALQEM-KTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGK-ALGEETQGGLALLGTSLIV  117 (125)
T ss_pred             HHHHHHH-HHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHH-HhccccccceeehhhhHHh
Confidence            4444422 2344444444444556666778888888877555443 33466778888888 4888887755 89999999


Q ss_pred             HHHHHH
Q 040176           96 LGFYTV  101 (142)
Q Consensus        96 ~Gv~l~  101 (142)
                      +|+.++
T Consensus       118 ~Gi~Lc  123 (125)
T KOG4831|consen  118 FGIWLC  123 (125)
T ss_pred             hhhhhe
Confidence            999875

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=82.85  E-value=2.3  Score=35.63  Aligned_cols=49  Identities=18%  Similarity=0.304  Sum_probs=39.6

Q ss_pred             hhhccCchhhhhhhhHHHHHHHHHHHHHhccccccch----hhhhHHHHHHHH
Q 040176           51 GVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGS----LVGATIISLGFY   99 (142)
Q Consensus        51 ~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~----iiG~~lil~Gv~   99 (142)
                      +.++.|.+.+-.+.-+..+++++-+.++++|+-+.++    ++|.++++.|..
T Consensus       215 s~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  215 SAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             hHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence            3345677777778889999999999999999998776    678888877754

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=82.78  E-value=9.2  Score=33.07  Aligned_cols=64  Identities=14%  Similarity=0.141  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhcccc---ccc----hhhhhHHHHHHHHHHHhc
Q 040176           41 SHFVFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDRL---YLG----SLVGATIISLGFYTVMWG  104 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~l---~l~----~iiG~~lil~Gv~l~~~~  104 (142)
                      =.++-..|..++++.|-+.. .+.+=++-+++++++.++++|--   +-.    .++|.++++.|+.+..+.
T Consensus        83 W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         83 WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            34455566677778886655 45666888899999999999765   222    388999999999998873

>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC

Probab=81.00  E-value=2.4  Score=31.13  Aligned_cols=44  Identities=16%  Similarity=0.084  Sum_probs=27.6

Q ss_pred             chhhhhhhhHHHHHHHHHHHHHhcccc---ccchhhhhHHHHHHHHHH
Q 040176           57 PVFVAMFKPLSIAIAVAMGVMFLGDRL---YLGSLVGATIISLGFYTV  101 (142)
Q Consensus        57 ps~~s~~~~l~PV~a~ila~l~LgE~l---~l~~iiG~~lil~Gv~l~  101 (142)
                      ...++.+.|+.|+++++++.++. ..+   .+..++++++.+..-|+.
T Consensus        67 ~~~aa~l~Y~lPll~li~g~~l~-~~~~~~e~~~~l~~l~~l~~~~~~  113 (135)
T PF04246_consen   67 LLKAAFLVYLLPLLALIAGAVLG-SYLGGSELWAILGGLLGLALGFLI  113 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999998877543 332   334455554444433333

The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=80.31  E-value=2.4  Score=35.49  Aligned_cols=59  Identities=14%  Similarity=0.070  Sum_probs=45.5

Q ss_pred             HHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176           47 VYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK  105 (142)
Q Consensus        47 l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k  105 (142)
                      .-.||++-++.+.-|+.--+.-.-..+.|.++++|+.+..++...++-+..-.+....|
T Consensus       240 ~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavak  298 (309)
T COG5070         240 CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK  298 (309)
T ss_pred             ccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            44689998999888888888888889999999999999999877766544333333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.16
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.78

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.16  E-value=9.2e-11  Score=87.24  Aligned_cols=65  Identities=17%  Similarity=0.226  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHhhhccCchhhhhh-hhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMF-KPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK  105 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~-~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k  105 (142)
                      +.++|.+|.+++++.+++.+..+ ..+.|++++++|+++++|++++.+++|.++|++|+++.++.+
T Consensus        40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            88899999999999999999887 899999999999999999999999999999999999988754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.78  E-value=9e-08  Score=67.98  Aligned_cols=65  Identities=17%  Similarity=0.226  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHhhhccCchhhhhh-hhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176           41 SHFVFVVYSYGVAALGPVFVAMF-KPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK  105 (142)
Q Consensus        41 S~la~~l~~~~i~~~gps~~s~~-~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k  105 (142)
                      ..++|.+|.+++++.+.+.+... ..+.|++++++++++++|++++.+++|.++|+.|+++.++.+
T Consensus        40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            67788999999999999999666 899999999999999999999999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00