Citrus Sinensis ID: 040184

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------70
Protein Sequence
MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFIIDNLIPTRFYHACMQLHYYLV
Secondary Structure (PSIPRED)
cccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEccccccEEEcccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEccccEEEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccEEEcccccccccccHHHHcccccccEEEccccEEcccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHcccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccEEccccccccccccHHHHcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHEEEEHHHHccHHHHHHHHHHHHHHHEEEEEEEEEcccccccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEEEccccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccccccccccEEEEEccccccccccHHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccHHEEEccccccccccccccccccHcHccccHccEEEccccccccccccccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MTSLRVLSLDlnqltgnisssplihLTSIERLFLSYnqfqipfslepffnnsklkvfsgECNEIFVesesshsmtpkfqLESVAlsgsgihatfpkflynqhdleyvdfsdsnlkgEFLNWLLENNTNLNTLVLRnnslsgpfrmpiqphwhldtlyvsknffqgnipleigvyfPRLVYLnlsrndfngsipssigdmnslealdlshnqltgeipehlamsCFNLEFLVLSENSLlgqlfskkNYLRKLVSLHldanyftgeipkslsncshleglymsdnnlygnipawlGNLSSLYDIMMASnhlqgpiplefcqlNYLQILDlsennisgslpscsshssitqvhlsknmlygplrygtffnrssivtldlsynsfsgyiPYWIERLTYLRYLILANnnlegevpiqLCRLKQLRLidlsnnnifgqipgcldntslhnngdnddslvpafnhnvrstysagsstmekEESIMFTTKEisfsykgkplnkmygvdlscnkltgeippqisKLTRIRALNlshnnltgvipvtfsnlnqveSLDIsynnlngkippqLVELNALAFFSVAHnnlsgkipewtAQFTtfkedsyegnpllcgkplpdcdvaavpeasneedgnslidmgsfyiTFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFIIDNLIPTRFYHACMQLHYYLV
Flexible Loop (DISEMBL)
MTSLRVLSLDLNqltgnissspLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVEsesshsmtPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRStysagsstmekeESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPeasneedgnsLIDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFIIDNLIPTRFYHACMQLHYYLV
Low Complexity Region (SEG)
MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFlnwllenntnlntlvlrnnslSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIsgslpscsshssITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFIIDNLIPTRFYHACMQLHYYLV
Disordered region (IsUnstruct)
******LSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVE***********QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIP**I****SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS**********SITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSL**********************************IMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAV**********SLIDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFIIDNLIPTRFYHACMQLHYYL*
Disordered Region (DISOPRED)
MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNN*********AFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCG***************************SFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFIIDNLIPTRFYHACMQLHYYLV
Disordered Region (DISEMBL)
MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVE********PKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGS************VHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRS***********EESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFIIDNLIPTRFYHACMQLHYYLV
Disordered Region (DISPRO)
*TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEA******NSLIDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFIIDNLIPTRFYHACMQLHYYLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFIIDNLIPTRFYHACMQLHYYLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	699	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.911	0.510	0.296	8e-60
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.856	0.478	0.312	1e-59
Q9FL28	1173	LRR receptor-like serine/	no	no	0.786	0.468	0.311	1e-58
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.904	0.574	0.306	3e-57
Q9LJF3	1164	Receptor-like protein kin	no	no	0.941	0.565	0.291	5e-57
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.846	0.490	0.300	6e-56
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.846	0.490	0.300	1e-55
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.848	0.497	0.302	1e-55
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.805	0.482	0.301	4e-55
P93194	1109	Receptor-like protein kin	N/A	no	0.696	0.439	0.325	9e-55

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  232 bits (591), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 220/743 (29%), Positives = 354/743 (47%), Gaps = 106/743 (14%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFS-- 58
           + +L++L+L   +LTG I S  L  L  ++ L L  N  + P   E   N S L VF+  
Sbjct: 166 LVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLILQDNYLEGPIPAE-LGNCSDLTVFTAA 223

Query: 59  ------------GECNEIFVESESSHSMTPKF--------QLESVALSGSGIHATFPKFL 98
                       G    + + + +++S+T +         QL+ ++L  + +    PK L
Sbjct: 224 ENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSL 283

Query: 99  YNQHDLEYVDFSDSNLKGEFLN--WLLENNTNLNTLVLRNNSLSGPFRMPI-QPHWHLDT 155
            +  +L+ +D S +NL GE     W   N + L  LVL NN LSG     I   + +L+ 
Sbjct: 284 ADLGNLQTLDLSANNLTGEIPEEFW---NMSQLLDLVLANNHLSGSLPKSICSNNTNLEQ 340

Query: 156 LYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGE 215
           L +S     G IP+E+      L  L+LS N   GSIP ++ ++  L  L L +N L G 
Sbjct: 341 LVLSGTQLSGEIPVELS-KCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGT 399

Query: 216 IPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCS-- 273
           +   ++ +  NL++LVL  N+L G+L  + + LRKL  L L  N F+GEIP+ + NC+  
Sbjct: 400 LSPSIS-NLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSL 458

Query: 274 --------HLEG--------------LYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG 311
                   H EG              L++  N L G +PA LGN   L  + +A N L G
Sbjct: 459 KMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSG 518

Query: 312 PIPLEFCQLNYLQILDLSENNISGSLP-SCSSHSSITQVHLSKNMLYGPLRYGTFFNRSS 370
            IP  F  L  L+ L L  N++ G+LP S  S  ++T+++LS N L G +        SS
Sbjct: 519 SIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIH--PLCGSSS 576

Query: 371 IVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIF 430
            ++ D++ N F   IP  +     L  L L  N L G++P  L ++++L L+D+S+N + 
Sbjct: 577 YLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALT 636

Query: 431 G----QIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESI---MF-TTK 482
           G    Q+  C   T +  N +     +P +   +        S+ +  ES+   +F  TK
Sbjct: 637 GTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTK 696

Query: 483 EISFSYKGKPLN-----------------------------------KMYGVDLSCNKLT 507
            +  S  G  LN                                   K+Y + LS N LT
Sbjct: 697 LLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLT 756

Query: 508 GEIPPQISKLTRIR-ALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELN 566
           GEIP +I +L  ++ AL+LS+NN TG IP T   L+++E+LD+S+N L G++P  + ++ 
Sbjct: 757 GEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMK 816

Query: 567 ALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGN 626
           +L + +V+ NNL GK+ +   QF+ +  DS+ GN  LCG PL  C+              
Sbjct: 817 SLGYLNVSFNNLGGKLKK---QFSRWPADSFLGNTGLCGSPLSRCNRVRSNNKQQGLSAR 873

Query: 627 SLIDMGSFYITFTSSYVIVILAI 649
           S++ + +         +I+++A+
Sbjct: 874 SVVIISAISALTAIGLMILVIAL 896

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  231 bits (590), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 200/641 (31%), Positives = 320/641 (49%), Gaps = 42/641 (6%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQ--IPFSLEPFFNNSKLKVFS 58
           + +L+ L+L  N  +G I S  L  L SI+ L L  NQ Q  IP  L    N   L + S
Sbjct: 239 LKNLQTLNLGDNSFSGEIPSQ-LGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSS 297

Query: 59  GECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFL-YNQHDLEYVDFSDSNLKGE 117
                +  E     +     QLE + L+ + +  + PK +  N   L+ +  S++ L GE
Sbjct: 298 NNLTGVIHEEFWRMN-----QLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGE 352

Query: 118 FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
            +   + N  +L  L L NN+L+G     +     L  LY++ N  +G +   I      
Sbjct: 353 -IPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSIS-NLTN 410

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
           L    L  N+  G +P  IG +  LE + L  N+ +GE+P  +  +C  L+ +    N L
Sbjct: 411 LQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIG-NCTRLQEIDWYGNRL 469

Query: 238 LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS 297
            G++ S    L+ L  LHL  N   G IP SL NC  +  + ++DN L G+IP+  G L+
Sbjct: 470 SGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLT 529

Query: 298 SLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLY 357
           +L   M+ +N LQG +P     L  L  ++ S N  +GS+      SS     +++N   
Sbjct: 530 ALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFE 589

Query: 358 G--PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR 415
           G  PL  G   N   +  L L  N F+G IP    +++ L  L ++ N+L G +P++L  
Sbjct: 590 GDIPLELGKSTN---LDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGL 646

Query: 416 LKQLRLIDLSNNNIFGQIPG------CLDNTSLHNNGDNDDSLVPAFN-HNVRSTYSAGS 468
            K+L  IDL+NN + G IP        L    L +N          F+  N+ + +  G+
Sbjct: 647 CKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGN 706

Query: 469 S----------TMEKEESIMFTTKEISF---SYKGKPLNKMYGVDLSCNKLTGEIPPQIS 515
           S           ++   ++     ++S    S  GK L+K++ + LS N LTGEIP +I 
Sbjct: 707 SLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGK-LSKLFELRLSRNALTGEIPVEIG 765

Query: 516 KLTRIR-ALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA 574
           +L  ++ AL+LS+NN TG IP T S L ++ESLD+S+N L G++P Q+ ++ +L + +++
Sbjct: 766 QLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLS 825

Query: 575 HNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAA 615
           +NNL GK+ +   QF+ ++ D++ GN  LCG PL  C+ A 
Sbjct: 826 YNNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSHCNRAG 863

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  228 bits (582), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 200/643 (31%), Positives = 299/643 (46%), Gaps = 93/643 (14%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQ--IPFSLEPFFNNSKLKVFS 58
           + +L  L L  NQLTG I      +L +++ L L+ N  +  IP  +             
Sbjct: 215 LANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLVLTENLLEGDIPAEI------------- 260

Query: 59  GECNEIFVESESSHSMTPKF--------QLESVALSGSGIHATFPKFLYNQHDLEYVDFS 110
           G C+ +       + +T K         QL+++ +  + + ++ P  L+    L ++  S
Sbjct: 261 GNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLS 320

Query: 111 DSNLKG---EFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNI 167
           +++L G   E + +L     +L  L L +N+ +G F   I    +L  L V  N   G +
Sbjct: 321 ENHLVGPISEEIGFL----ESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGEL 376

Query: 168 PLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNL 227
           P ++G+    L  L+   N   G IPSSI +   L+ LDLSHNQ+TGEIP        NL
Sbjct: 377 PADLGL-LTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGR--MNL 433

Query: 228 EFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYG 287
            F+ +  N                        +FTGEIP  + NCS+LE L ++DNNL G
Sbjct: 434 TFISIGRN------------------------HFTGEIPDDIFNCSNLETLSVADNNLTG 469

Query: 288 NIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSIT 347
            +   +G L  L  + ++ N L GPIP E   L  L IL L  N  +G +P   S+ ++ 
Sbjct: 470 TLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLL 529

Query: 348 Q-VHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLE 406
           Q + +  N L GP+     F+   +  LDLS N FSG IP    +L  L YL L  N   
Sbjct: 530 QGLRMYSNDLEGPIPE-EMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFN 588

Query: 407 GEVPIQLCRLKQLRLIDLSNNNIFGQIPG----CLDNTSLHNNGDNDDSLVPAFNHNVRS 462
           G +P  L  L  L   D+S+N + G IPG     L N  L+ N          F++N+ +
Sbjct: 589 GSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLN----------FSNNLLT 638

Query: 463 TYSAGSSTMEKEESIMFTTKEISFS---YKG------KPLNKMYGVDLSCNKLTGEIPPQ 513
                  T+ KE   +   +EI  S   + G      +    ++ +D S N L+G IP +
Sbjct: 639 ------GTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDE 692

Query: 514 I-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFS 572
           +   +  I +LNLS N+ +G IP +F N+  + SLD+S NNL G+IP  L  L+ L    
Sbjct: 693 VFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLK 752

Query: 573 VAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCG--KPLPDCDV 613
           +A NNL G +PE +  F         GN  LCG  KPL  C +
Sbjct: 753 LASNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKPLKPCTI 794

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  223 bits (569), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 204/666 (30%), Positives = 316/666 (47%), Gaps = 34/666 (5%)

Query: 3   SLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQF--QIPFSLEPFFNNSKLKVFSGE 60
           SL VL L  N+  G I    L  + ++++L+L  N     IP  +    +  +L ++S  
Sbjct: 116 SLEVLDLCTNRFHGVIPIQ-LTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNN 174

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
              +        SM    QL  +    +G     P  +     L+ +  +++ L+G  L 
Sbjct: 175 LTGVI-----PPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGS-LP 228

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
             LE   NL  L+L  N LSG     +     L+ L + +N+F G+IP EIG    ++  
Sbjct: 229 KQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIG-KLTKMKR 287

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
           L L  N   G IP  IG++     +D S NQLTG IP+       NL+ L L EN LLG 
Sbjct: 288 LYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFG-HILNLKLLHLFENILLGP 346

Query: 241 LFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLY 300
           +  +   L  L  L L  N   G IP+ L    +L  L + DN L G IP  +G  S+  
Sbjct: 347 IPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFS 406

Query: 301 DIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLP-SCSSHSSITQVHLSKNMLYGP 359
            + M++N L GPIP  FC+   L +L L  N +SG++P    +  S+T++ L  N L G 
Sbjct: 407 VLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGS 466

Query: 360 LRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQL 419
           L     FN  ++  L+L  N  SG I   + +L  L  L LANNN  GE+P ++  L ++
Sbjct: 467 LPI-ELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKI 525

Query: 420 RLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGS-STMEKEESIM 478
              ++S+N + G IP  L +       D         + N  S Y A     +   E + 
Sbjct: 526 VGFNISSNQLTGHIPKELGSCVTIQRLD--------LSGNKFSGYIAQELGQLVYLEILR 577

Query: 479 FT----TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIR-ALNLSHNNLTGV 533
            +    T EI  S+    L ++  + L  N L+  IP ++ KLT ++ +LN+SHNNL+G 
Sbjct: 578 LSDNRLTGEIPHSFG--DLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGT 635

Query: 534 IPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFK 593
           IP +  NL  +E L ++ N L+G+IP  +  L +L   ++++NNL G +P+ TA F    
Sbjct: 636 IPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPD-TAVFQRMD 694

Query: 594 EDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVL 653
             ++ GN  LC      C    VP + ++   N LI+ GS      +   IVI ++  + 
Sbjct: 695 SSNFAGNHGLCNSQRSHCQ-PLVPHSDSKL--NWLIN-GSQRQKILTITCIVIGSVFLIT 750

Query: 654 YVNPYW 659
           ++   W
Sbjct: 751 FLGLCW 756

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  223 bits (567), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 216/740 (29%), Positives = 348/740 (47%), Gaps = 82/740 (11%)

Query: 5   RVLSLDLNQ--LTGNISSSPLIHLTSIERLFLSYNQFQ--------------IPFSLEPF 48
           RV+ LDL    LTG ++ + L  L+++  L+L  N F               +  S    
Sbjct: 77  RVIGLDLRNGGLTGTLNLNNLTALSNLRSLYLQGNNFSSGDSSSSSGCSLEVLDLSSNSL 136

Query: 49  FNNSKLKVFSGEC----------NEIFVESESSHSMTPKFQLESVALSGSGIHATFPK-F 97
            ++S +      C          N++  + +SS S + K ++ +V LS +      P+ F
Sbjct: 137 TDSSIVDYVFSTCLNLVSVNFSHNKLAGKLKSSPSASNK-RITTVDLSNNRFSDEIPETF 195

Query: 98  LYN-QHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGP-FRMPIQPHWHLDT 155
           + +  + L+++D S +N+ G+F         NL    L  NS+SG  F + +     L+T
Sbjct: 196 IADFPNSLKHLDLSGNNVTGDFSRLSFGLCENLTVFSLSQNSISGDRFPVSLSNCKLLET 255

Query: 156 LYVSKNFFQGNIPLE-IGVYFPRLVYLNLSRNDFNGSIPSSIGDM-NSLEALDLSHNQLT 213
           L +S+N   G IP +     F  L  L+L+ N ++G IP  +  +  +LE LDLS N LT
Sbjct: 256 LNLSRNSLIGKIPGDDYWGNFQNLRQLSLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLT 315

Query: 214 GEIPEHLAMSCFNLEFLVLSENSLLGQLFSKK-NYLRKLVSLHLDANYFTGEIPKSLSNC 272
           G++P+    SC +L+ L L  N L G   S   + L ++ +L+L  N  +G +P SL+NC
Sbjct: 316 GQLPQSFT-SCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVPISLTNC 374

Query: 273 SHLEGLYMSDNNLYGNIPAWLGNLSS---LYDIMMASNHLQGPIPLEFCQLNYLQILDLS 329
           S+L  L +S N   G +P+   +L S   L  +++A+N+L G +P+E  +   L+ +DLS
Sbjct: 375 SNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKCKSLKTIDLS 434

Query: 330 ------------------------ENNISGSLPS--CSSHSSITQVHLSKNMLYGPLRYG 363
                                    NN++G +P   C    ++  + L+ N+L G L   
Sbjct: 435 FNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNLLTGSLPE- 493

Query: 364 TFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLID 423
           +    ++++ + LS N  +G IP  I +L  L  L L NN+L G +P +L   K L  +D
Sbjct: 494 SISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKNLIWLD 553

Query: 424 LSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKE 483
           L++NN+ G +PG L + +      +      AF  N   T   G+  + + E I     E
Sbjct: 554 LNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLE 613

Query: 484 ISFSYKGKPLNKMYG---------------VDLSCNKLTGEIPPQISKLTRIRALNLSHN 528
                   P  ++Y                +DLS N ++G IP     +  ++ LNL HN
Sbjct: 614 HFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLNLGHN 673

Query: 529 NLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQ 588
            LTG IP +F  L  +  LD+S+N+L G +P  L  L+ L+   V++NNL+G IP +  Q
Sbjct: 674 LLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIP-FGGQ 732

Query: 589 FTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMG-SFYITFT-SSYVIVI 646
            TTF    Y  N  LCG PLP C   + P  S+       I  G S  I F+    V++I
Sbjct: 733 LTTFPLTRYANNSGLCGVPLPPCSSGSRPTRSHAHPKKQSIATGMSAGIVFSFMCIVMLI 792

Query: 647 LAIIGVLYVNPYWHRRWFYL 666
           +A+     V     +R  Y+
Sbjct: 793 MALYRARKVQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  219 bits (558), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 206/686 (30%), Positives = 328/686 (47%), Gaps = 94/686 (13%)

Query: 28  SIERLFLSYNQFQIPFSLEPFFNN---SKLKVFSGECNEIFVESESSHSMTPKFQLESVA 84
           S++ L LSYN     F+L P+ ++    +L+ FS + N++           P+   ++++
Sbjct: 186 SLQVLDLSYNNIS-GFNLFPWVSSMGFVELEFFSIKGNKL-------AGSIPELDFKNLS 237

Query: 85  ---LSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSG 141
              LS +     FP F  +  +L+++D S +   G+ +   L +   L+ L L NN   G
Sbjct: 238 YLDLSANNFSTVFPSF-KDCSNLQHLDLSSNKFYGD-IGSSLSSCGKLSFLNLTNNQFVG 295

Query: 142 PFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNS 201
              +P  P   L  LY+  N FQG  P ++      +V L+LS N+F+G +P S+G+ +S
Sbjct: 296 --LVPKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSS 353

Query: 202 LEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQL---FSK-------------- 244
           LE +D+S+N  +G++P    +   N++ +VLS N  +G L   FS               
Sbjct: 354 LELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNL 413

Query: 245 ---------KNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGN 295
                    K+ +  L  L+L  N F G IP SLSNCS L  L +S N L G+IP+ LG+
Sbjct: 414 TGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGS 473

Query: 296 LSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNM 355
           LS L D+++  N L G IP E   L  L+ L L  N+++G +P  +S S+ T+++     
Sbjct: 474 LSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIP--ASLSNCTKLNW---- 527

Query: 356 LYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR 415
                             + LS N  SG IP  + RL+ L  L L NN++ G +P +L  
Sbjct: 528 ------------------ISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGN 569

Query: 416 LKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPA------FNHNVRSTYSAGS- 468
            + L  +DL+ N + G IP  L       +G+   +L+         N   +  + AG+ 
Sbjct: 570 CQSLIWLDLNTNFLNGSIPPPL----FKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNL 625

Query: 469 ---STMEKEESIMFTTKE---ISFSYKG--KPL----NKMYGVDLSCNKLTGEIPPQISK 516
                + +E+    +T+     +  Y+G  +P       M  +DLS NKL G IP ++  
Sbjct: 626 LEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGA 685

Query: 517 LTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHN 576
           +  +  LNL HN+L+G+IP     L  V  LD+SYN  NG IP  L  L  L    +++N
Sbjct: 686 MYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNN 745

Query: 577 NLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYI 636
           NLSG IPE +A F TF +  +  N  LCG PLP    ++ P++   +   S     S   
Sbjct: 746 NLSGMIPE-SAPFDTFPDYRFANNS-LCGYPLP-LPCSSGPKSDANQHQKSHRRQASLAG 802

Query: 637 TFTSSYVIVILAIIGVLYVNPYWHRR 662
           +     +  +  I G++ V     +R
Sbjct: 803 SVAMGLLFSLFCIFGLIIVAIETKKR 828

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  218 bits (556), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 206/686 (30%), Positives = 327/686 (47%), Gaps = 94/686 (13%)

Query: 28  SIERLFLSYNQFQIPFSLEPFFNN---SKLKVFSGECNEIFVESESSHSMTPKFQLESVA 84
           S++ L LSYN     F+L P+ ++    +L+ FS + N++           P+   ++++
Sbjct: 186 SLQVLDLSYNNIS-GFNLFPWVSSMGFVELEFFSLKGNKL-------AGSIPELDFKNLS 237

Query: 85  ---LSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSG 141
              LS +     FP F  +  +L+++D S +   G+ +   L +   L+ L L NN   G
Sbjct: 238 YLDLSANNFSTVFPSF-KDCSNLQHLDLSSNKFYGD-IGSSLSSCGKLSFLNLTNNQFVG 295

Query: 142 PFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNS 201
              +P  P   L  LY+  N FQG  P ++      +V L+LS N+F+G +P S+G+ +S
Sbjct: 296 --LVPKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSS 353

Query: 202 LEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQL---FSK-------------- 244
           LE +D+S+N  +G++P        N++ +VLS N  +G L   FS               
Sbjct: 354 LELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNL 413

Query: 245 ---------KNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGN 295
                    K+ +  L  L+L  N F G IP SLSNCS L  L +S N L G+IP+ LG+
Sbjct: 414 TGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGS 473

Query: 296 LSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNM 355
           LS L D+++  N L G IP E   L  L+ L L  N+++G +P  +S S+ T+++     
Sbjct: 474 LSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIP--ASLSNCTKLNW---- 527

Query: 356 LYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR 415
                             + LS N  SG IP  + RL+ L  L L NN++ G +P +L  
Sbjct: 528 ------------------ISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGN 569

Query: 416 LKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPA------FNHNVRSTYSAGS- 468
            + L  +DL+ N + G IP  L       +G+   +L+         N   +  + AG+ 
Sbjct: 570 CQSLIWLDLNTNFLNGSIPPPL----FKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNL 625

Query: 469 ---STMEKEESIMFTTKE---ISFSYKG--KPL----NKMYGVDLSCNKLTGEIPPQISK 516
                + +E+    +T+     +  Y+G  +P       M  +DLS NKL G IP ++  
Sbjct: 626 LEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGA 685

Query: 517 LTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHN 576
           +  +  LNL HN+L+G+IP     L  V  LD+SYN  NG IP  L  L  L    +++N
Sbjct: 686 MYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNN 745

Query: 577 NLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYI 636
           NLSG IPE +A F TF +  +  N  LCG PLP    ++ P++   +   S     S   
Sbjct: 746 NLSGMIPE-SAPFDTFPDYRFANNS-LCGYPLP-IPCSSGPKSDANQHQKSHRRQASLAG 802

Query: 637 TFTSSYVIVILAIIGVLYVNPYWHRR 662
           +     +  +  I G++ V     +R
Sbjct: 803 SVAMGLLFSLFCIFGLIIVAIETKKR 828

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  218 bits (556), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 207/685 (30%), Positives = 323/685 (47%), Gaps = 92/685 (13%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQF--QIPFSLEPFFNNSKLKVFS 58
           + +L  L +  N L+G I    +  L+++  L++  N F  QIP  +    N S LK F+
Sbjct: 161 LPALSSLDVSNNSLSGEIPPE-IGKLSNLSNLYMGLNSFSGQIPSEIG---NISLLKNFA 216

Query: 59  GECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
                 F        ++    L  + LS + +  + PK     H+L  ++   + L G  
Sbjct: 217 AP--SCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIG-L 273

Query: 119 LNWLLENNTNLNTLVLRNNSLSGPFRMPIQ------------------PHWH-----LDT 155
           +   L N  +L +L+L  NSLSGP  + +                   P W      LD+
Sbjct: 274 IPPELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLTFSAERNQLSGSLPSWMGKWKVLDS 333

Query: 156 LYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGE 215
           L ++ N F G IP EI    P L +L+L+ N  +GSIP  +    SLEA+DLS N L+G 
Sbjct: 334 LLLANNRFSGEIPHEI-EDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGT 392

Query: 216 IPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSL------ 269
           I E +   C +L  L+L+ N + G +  +  +   L++L LD+N FTGEIPKSL      
Sbjct: 393 I-EEVFDGCSSLGELLLTNNQINGSI-PEDLWKLPLMALDLDSNNFTGEIPKSLWKSTNL 450

Query: 270 ------------------SNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG 311
                              N + L+ L +SDN L G IP  +G L+SL  + + +N  QG
Sbjct: 451 MEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQG 510

Query: 312 PIPLEFCQLNYLQILDLSENNISGSLP-SCSSHSSITQVHLSKNMLYG--PLRYGTFFNR 368
            IP+E      L  LDL  NN+ G +P   ++ + +  + LS N L G  P +   +F++
Sbjct: 511 KIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQ 570

Query: 369 SSIVTL---------DLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQL 419
             +  L         DLSYN  SG IP  +     L  + L+NN+L GE+P  L RL  L
Sbjct: 571 IEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNL 630

Query: 420 RLIDLSNNNIFGQIPGCLDNT------SLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEK 473
            ++DLS N + G IP  + N+      +L NN           N ++  ++    S ++ 
Sbjct: 631 TILDLSGNALTGSIPKEMGNSLKLQGLNLANN---------QLNGHIPESFGLLGSLVKL 681

Query: 474 EESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGV 533
             +       +  S     L ++  +DLS N L+GE+  ++S + ++  L +  N  TG 
Sbjct: 682 NLTKNKLDGPVPASLGN--LKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGE 739

Query: 534 IPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP-EWTAQFTTF 592
           IP    NL Q+E LD+S N L+G+IP ++  L  L F ++A NNL G++P +   Q  + 
Sbjct: 740 IPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPS- 798

Query: 593 KEDSYEGNPLLCGKPL-PDCDVAAV 616
            +    GN  LCG+ +  DC +   
Sbjct: 799 -KALLSGNKELCGRVVGSDCKIEGT 822

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  216 bits (550), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 181/601 (30%), Positives = 287/601 (47%), Gaps = 38/601 (6%)

Query: 103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHW----HLDTLYV 158
           +L +   S +NL G+     L N   L TL +  N+L+G  ++P   +W    +L  L +
Sbjct: 227 NLTFFSLSQNNLSGDKFPITLPNCKFLETLNISRNNLAG--KIPNGEYWGSFQNLKQLSL 284

Query: 159 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPE 218
           + N   G IP E+ +    LV L+LS N F+G +PS       L+ L+L +N L+G+   
Sbjct: 285 AHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLN 344

Query: 219 HLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPK---SLSNCSHL 275
            +      + +L ++ N++ G +         L  L L +N FTG +P    SL +   L
Sbjct: 345 TVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVL 404

Query: 276 EGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG 335
           E + +++N L G +P  LG   SL  I ++ N L GPIP E   L  L  L +  NN++G
Sbjct: 405 EKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTG 464

Query: 336 SLPS--CSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLT 393
           ++P   C    ++  + L+ N+L G +   +    ++++ + LS N  +G IP  I  L+
Sbjct: 465 TIPEGVCVKGGNLETLILNNNLLTGSIPE-SISRCTNMIWISLSSNRLTGKIPSGIGNLS 523

Query: 394 YLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLV 453
            L  L L NN+L G VP QL   K L  +DL++NN+ G +PG L + +      +     
Sbjct: 524 KLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQ 583

Query: 454 PAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYG--------------- 498
            AF  N   T   G+  + + E I     E        P  ++Y                
Sbjct: 584 FAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIY 643

Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
            D+S N ++G IPP    +  ++ LNL HN +TG IP +F  L  +  LD+S+NNL G +
Sbjct: 644 FDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYL 703

Query: 559 PPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD------ 612
           P  L  L+ L+   V++NNL+G IP +  Q TTF    Y  N  LCG PL  C       
Sbjct: 704 PGSLGSLSFLSDLDVSNNNLTGPIP-FGGQLTTFPVSRYANNSGLCGVPLRPCGSAPRRP 762

Query: 613 VAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMT 672
           + +   A  +    ++I   +F       +V++++A+  V  V     +R  Y IE+  T
Sbjct: 763 ITSRIHAKKQTVATAVIAGIAFSFM---CFVMLVMALYRVRKVQKKEQKREKY-IESLPT 818

Query: 673 S 673
           S
Sbjct: 819 S 819

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  215 bits (548), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 175/538 (32%), Positives = 257/538 (47%), Gaps = 51/538 (9%)

Query: 79  QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNS 138
            L+ V LSG+G   + P  L N   LE++D S ++  G   +  L    NL  L L  NS
Sbjct: 93  HLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPD-TLGALQNLRNLSLFFNS 151

Query: 139 LSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 198
           L GPF   +    HL+T+Y + N   G+IP  IG     L  L L  N F+G +PSS+G+
Sbjct: 152 LIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIG-NMSELTTLWLDDNQFSGPVPSSLGN 210

Query: 199 MNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDA 258
           + +L+ L L+ N L G +P  L  +  NL +L +  NSL+G +       +++ ++ L  
Sbjct: 211 ITTLQELYLNDNNLVGTLPVTLN-NLENLVYLDVRNNSLVGAIPLDFVSCKQIDTISLSN 269

Query: 259 NYFTGEIPKSLSNCS------------------------HLEGLYMSDNNLYGNIPAWLG 294
           N FTG +P  L NC+                         L+ LY++ N+  G IP  LG
Sbjct: 270 NQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELG 329

Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLP-SCSSHSSITQVHLSK 353
              S+ D+ +  N L+G IP E   L+ LQ L L  NN+SG +P S     S+  + L +
Sbjct: 330 KCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQ 389

Query: 354 NMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQL 413
           N L G L          +V+L L  N F+G IP  +   + L  L L  N   G +P  L
Sbjct: 390 NNLSGELPV-DMTELKQLVSLALYENHFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNL 448

Query: 414 CRLKQLRLIDLSNNNIFGQIP----GCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSS 469
           C  K+L+ + L  N + G +P    GC     L    +N    +P F             
Sbjct: 449 CSQKKLKRLLLGYNYLEGSVPSDLGGCSTLERLILEENNLRGGLPDF------------- 495

Query: 470 TMEKEESIMFTTKEISFSYKGKP----LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNL 525
            +EK+  + F     +F+    P    L  +  + LS N+L+G IPP++  L ++  LNL
Sbjct: 496 -VEKQNLLFFDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNL 554

Query: 526 SHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583
           SHN L G++P   SN +++  LD S+N LNG IP  L  L  L   S+  N+ SG IP
Sbjct: 555 SHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSLGENSFSGGIP 612

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	699
255581263	912	serine-threonine protein kinase, plant-t	0.941	0.721	0.516	1e-178
224142481	781	predicted protein [Populus trichocarpa]	0.951	0.851	0.478	1e-162
224073452	710	predicted protein [Populus trichocarpa]	0.962	0.947	0.446	1e-148
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.964	0.460	0.460	1e-147
224112245	876	predicted protein [Populus trichocarpa]	0.826	0.659	0.460	1e-147
224073382	1309	predicted protein [Populus trichocarpa]	0.964	0.514	0.440	1e-147
224073436	1014	predicted protein [Populus trichocarpa]	0.964	0.664	0.437	1e-146
224134891	953	predicted protein [Populus trichocarpa]	0.962	0.706	0.437	1e-144
224123984	1016	predicted protein [Populus trichocarpa]	0.962	0.662	0.434	1e-143
224073422	969	predicted protein [Populus trichocarpa]	0.947	0.683	0.436	1e-142

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 350/677 (51%), Positives = 459/677 (67%), Gaps = 19/677 (2%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           +TSL++L L  NQ  G+IS+SPL  L S+  L +S N FQ+PFSL PFFN+S LK   G+
Sbjct: 250 LTSLQLLDLSSNQFVGDISNSPLKILKSLVDLDVSNNHFQVPFSLGPFFNHSNLKHIRGQ 309

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
            N I++E+E  HS  P+FQL S+  SG GI  TFP FLY+Q++L++VD S  +LKGEF N
Sbjct: 310 NNAIYLEAEL-HS-APRFQLISIIFSGYGICGTFPNFLYHQNNLQFVDLSHLSLKGEFPN 367

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
           WLL NNT L  L L NNSLSG  ++P+ PH +L  L +S N    +IPLEIG + P+L  
Sbjct: 368 WLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEIGTFLPKLEL 427

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
           LN+S N F+GSIPSS G+MNSL  LDLS+NQL+G IPEHLA  CF+L  L+LS NSL GQ
Sbjct: 428 LNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLILSNNSLQGQ 487

Query: 241 LFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLY 300
           +FSK+  L  L  L LD N+F+G IPKSLS  S L  + +SDN+L G IP W+GNLS L 
Sbjct: 488 MFSKQFNLTNLWWLELDKNHFSGRIPKSLSK-SALSIMDLSDNHLSGMIPGWIGNLSYLQ 546

Query: 301 DIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPL 360
           ++++++N L+GPIP+EFCQL+YL++LDL+ N++SG LPSC S SSI  VHLS+NM+ GP 
Sbjct: 547 NLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGILPSCLSPSSIIHVHLSQNMIEGPW 606

Query: 361 RYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLR 420
               F     +VTLDLS N  +G IP  I  +  LR L L +N  +GE+P Q+C L QL 
Sbjct: 607 T-NAFSGSHFLVTLDLSSNRITGRIPTLIGGINALRILNLKSNRFDGEIPAQICGLYQLS 665

Query: 421 LIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFT 480
           LI L++NN+ G IP CL         D  DSL P    +V    +  +        + FT
Sbjct: 666 LIVLADNNLSGSIPSCLQ-------LDQSDSLAP----DVPPVPNPLNPYYLPVRPMYFT 714

Query: 481 TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSN 540
           TK  S+SY+GK L+ + G+D SCNKLTGEIPP++   + I +LNLS+N  TG IP TFSN
Sbjct: 715 TKRRSYSYQGKILSYISGIDFSCNKLTGEIPPEMGNHSAIYSLNLSYNRFTGPIPSTFSN 774

Query: 541 LNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGN 600
           L Q+ESLD+SYNNLNG IP QL+EL  L++FSVAHNNL GK P+ T QF TF+  SYEGN
Sbjct: 775 LKQIESLDLSYNNLNGDIPSQLLELKFLSYFSVAHNNLFGKTPKRTGQFATFEVSSYEGN 834

Query: 601 PLLCGKPLP----DCDVAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVN 656
           P LCG PLP    + + ++ P AS  ++ ++ +DM +FY +F  SY  VI+ +  VLY+N
Sbjct: 835 PNLCGLPLPKSCTEREASSAPRASAMDEESNFLDMNTFYGSFIVSYTFVIIGMFLVLYIN 894

Query: 657 PYWHRRWFYLIENWMTS 673
           P W R WF  ++  ++S
Sbjct: 895 PQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 340/710 (47%), Positives = 450/710 (63%), Gaps = 45/710 (6%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           + +L+VL +  N  +GNIS S +  LTSI  L LS N FQIP SL PFFN S LK  +G+
Sbjct: 99  LNNLQVLDISFNNFSGNISLSRIGSLTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGD 158

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
            NEI+  +E  H++ P+FQL+ ++L+  G   TFPKFLY QHDL++VD S   + GEF +
Sbjct: 159 HNEIYESTELVHNLIPRFQLQRLSLACHGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPS 218

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
           WLL+NNT L  L L N+SLSG  ++P   H +L  L +S+N  Q  IP +IG YFP L +
Sbjct: 219 WLLQNNTKLEALYLVNSSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEF 278

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
           LNLSRN F+GSIPSSI +M+SL  LDLS+N L+G IPE L   C +L  LVLS N L GQ
Sbjct: 279 LNLSRNYFSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQ 338

Query: 241 LFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLY 300
            F +   L  L  L L  N  TG +P SLSN S LE L +S NNL G IP W+G +SSL 
Sbjct: 339 FFWRSFNLAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQ 398

Query: 301 DIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPL 360
            + ++ N+L G +P  FC                       S  ++T+V+LSKN L G L
Sbjct: 399 YLDLSENNLYGSLPSSFC-----------------------SSRTMTEVYLSKNKLEGSL 435

Query: 361 RYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLR 420
             G      S+  LDLS+N F G IP  I  L  L +L+L  NNLEG++P QLC+L++L 
Sbjct: 436 -IGALDGCLSLNRLDLSHNYFGGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLS 494

Query: 421 LIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTY---------SAGSSTM 471
           LIDLS+N++FG I  CL  TS     + + SL P+ N   R            +    +M
Sbjct: 495 LIDLSHNHLFGHILPCLQPTSKWQR-ERETSLNPSGNSLGRENRGPQIVFPVPAVEDPSM 553

Query: 472 EKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLT 531
            K  S+ FTTK IS+S+KG  L  + G+DLSCN LTGEIP ++  L+ I+ LNLSHN+LT
Sbjct: 554 NK--SVEFTTKSISYSFKGIILKYISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLT 611

Query: 532 GVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTT 591
           G IP TFSNL ++ESLD+SYNNLNG+IP QL++LN L+ FSVAHNNLSGK PE  AQF+T
Sbjct: 612 GPIPPTFSNLKEIESLDLSYNNLNGEIPRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFST 671

Query: 592 FKEDSYEGNPLLCGKPLPDCDVAAVPEA------SNEEDGNSLIDMGSFYITFTSSYVIV 645
           F +  YEGNPLLCG PL      A+P +      +++++ N +IDM +F +TF+ +Y++V
Sbjct: 672 FNKSCYEGNPLLCGPPLARNCTRALPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMV 731

Query: 646 ILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFIIDNL-IPTRF--YHACM 692
           +L I  VLY+NP W R WFY I   + +C+YF++DNL +P RF  +  C+
Sbjct: 732 LLTIGSVLYINPRWRRAWFYFIGESINNCYYFLVDNLPVPARFRRFQPCV 781

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073452|ref|XP_002304097.1| predicted protein [Populus trichocarpa] gi|222841529|gb|EEE79076.1| predicted protein [Populus trichocarpa]

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 315/705 (44%), Positives = 422/705 (59%), Gaps = 32/705 (4%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           M+SL++L +  NQ TGNI+  PL +L S+E L LS N F++P S++PF N+S LK FS E
Sbjct: 1   MSSLQLLDVSENQFTGNIAFGPLTNLISLEFLSLSNNLFEVPISIKPFMNHSSLKFFSSE 60

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATF---PKFLYNQHDLEYVDFSDSNLKGE 117
            N++  E  +  ++ PKFQL    LS S         P FLY Q DL  +D S +N+ G 
Sbjct: 61  NNKLVTEPAAFDNLIPKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGM 120

Query: 118 FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
           F +WLL+NNT L  L L +NS  G  ++    H ++  L +S N   G IP +I + FP 
Sbjct: 121 FPSWLLKNNTRLEQLYLSDNSFIGALQLQDHLHPNMTNLDISNNNMNGQIPKDICLIFPN 180

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
           L  L +++N F G IPS +G+++SL  LDLS+NQL+    E L      +  L LS N+L
Sbjct: 181 LHTLRMAKNGFTGCIPSCLGNISSLSFLDLSNNQLSTVKLEQLTT----IWVLKLSNNNL 236

Query: 238 LGQLFSKKNYLRKLVSLHLDANYFTGEIPK-SLSNCSHLEGLYMSDNNLYGNIPAWLGNL 296
            G++ +      +L  L+L+ N F G+I    L   +    L +S+N   G +P    N 
Sbjct: 237 GGKIPTSVFNSSRLNFLYLNGNNFWGQISDFPLYRWNVWNVLDLSNNQFSGMLPRSFVNF 296

Query: 297 SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNML 356
           S L  I ++ NH +GPIP +FC+ + L+ LDLSENN+SG +PSC S   IT VHLSKN L
Sbjct: 297 SILGVIDLSGNHFKGPIPRDFCKFDQLEYLDLSENNLSGYIPSCFSPPQITHVHLSKNRL 356

Query: 357 YGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL 416
            GPL Y  FFN S +VT+DL  NSF+G IP WI  L+ L  L+L  N+ +GE+PIQLC L
Sbjct: 357 SGPLTYA-FFNSSYLVTMDLRENSFTGSIPNWIGNLSSLSVLLLRANHFDGELPIQLCLL 415

Query: 417 KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTME---- 472
           +QL ++D+S+N + G +P CL N +   + D    L  A+     S   A    M     
Sbjct: 416 EQLSILDVSHNQLSGPLPSCLGNLTFKKS-DKKAILEVAYGFISESIEKAYYEIMGPPLV 474

Query: 473 --------------KEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLT 518
                          EE   FTTK + + YKGK LN M+G+DLS N   G IPP+   L+
Sbjct: 475 DSVDNLRNFFLFNFTEEVTEFTTKNMYYGYKGKVLNYMFGIDLSNNNFIGAIPPEFGNLS 534

Query: 519 RIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNL 578
           +I ++NLSHNNLTG IP TFSNL  +ESLD+SYNNLNG IPPQ  E+  L  FSVAHNNL
Sbjct: 535 KILSVNLSHNNLTGSIPATFSNLMHIESLDLSYNNLNGAIPPQFTEVTTLEVFSVAHNNL 594

Query: 579 SGKIPEWTAQFTTFKEDSYEGNPLLCGKPLP-DCDVAAV---PEASNEEDGNSLIDMGSF 634
           SGK PE   QF TF E  YEGNP LCG PLP +C   AV   P  ++E+  +  IDM  F
Sbjct: 595 SGKTPERIYQFGTFDESCYEGNPFLCGPPLPNNCSEKAVVSQPVPNDEQGDDGFIDMEFF 654

Query: 635 YITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFII 679
           YI+F   Y +V++ I  VLY+NPYW RRW Y IE+ + +C+YF++
Sbjct: 655 YISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFVV 699

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 321/697 (46%), Positives = 432/697 (61%), Gaps = 23/697 (3%)

Query: 1    MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
            +TSLR L L  N+ +GN+ SS    L  +E L LS+N FQ    +  F  +SKL+V    
Sbjct: 765  LTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLI 824

Query: 61   C--NEIFVESESSHSMTPKFQLESVALSGSGIH-ATFPKFLYNQHDLEYVDFSDSNLKGE 117
            C  N + +ESE   +  P FQL+   LS   +   + P FL+ QHDL  VD S+S+L+ +
Sbjct: 825  CGNNTLLLESED-QTWVPSFQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEED 883

Query: 118  FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
            F  WL++NNT L  L L+NNSL+G F +P +P+     + +S N  QG +P  I V  P 
Sbjct: 884  FPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPN 943

Query: 178  LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
            L++LN+SRN F GSIPS  G M  L  LDLS+N  TG IPE LAM C +LE+L+LS+N L
Sbjct: 944  LMFLNVSRNSFEGSIPS-FGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDL 1002

Query: 238  LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS 297
             GQ+F + + L  L  L LD N+F+G+IP  LSN S LE LY+S N++ G +P W+GN+S
Sbjct: 1003 HGQMFPRVSNLPSLRHLELDDNHFSGKIP-DLSNSSGLERLYVSHNSISGKLPGWIGNMS 1061

Query: 298  SLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLY 357
            +L  ++M +N L+GPIP+EFC L+ L++LDLS NN+SGSLPSC S S +  VHL +N L 
Sbjct: 1062 NLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLT 1121

Query: 358  GPLRYGTFFNRS-SIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL 416
            GPL     F RS  + TLD+  N+ SG IP WI   + L  L+L  N+ +G++P QLC+L
Sbjct: 1122 GPLTKA--FTRSMDLATLDIRNNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQL 1179

Query: 417  KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDD-SLVPAFNHNVRSTYSAGSSTME--- 472
             ++ ++DLS N++ G IP CL+         +   S++  F     S+Y   S  +E   
Sbjct: 1180 SKITILDLSYNSLSGHIPSCLNKIQFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQ 1239

Query: 473  ----------KEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRA 522
                       +    FTTK  +  YKG  L  M G+DLS NKLTG IPP+I  L+++ A
Sbjct: 1240 VNVNSYPIAYDKAMAEFTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHA 1299

Query: 523  LNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKI 582
            LNLSHN LTG IP  FS L  +ESLD+SYNNL G IP +L EL  LA FSVA+NNLSGKI
Sbjct: 1300 LNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKI 1359

Query: 583  PEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITFTSSY 642
            PE TAQF TF E+SY GNP LCG  L      A  EA  EE    L D   FY++F +SY
Sbjct: 1360 PEMTAQFGTFLENSYVGNPYLCGSLLRKNCSRAEEEAEIEEGEKGLTDRDIFYVSFGASY 1419

Query: 643  VIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFII 679
            V+V+L +  VLY+N  W ++WF++I+  +T C  F++
Sbjct: 1420 VVVLLGVAAVLYINGGWRKKWFHVIDVLITCCCNFVM 1456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa]

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 300/651 (46%), Positives = 401/651 (61%), Gaps = 73/651 (11%)

Query: 23  LIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLES 82
           L +LTS++RL LS N  +IP SL P +N SKLK F G  NEI+ E E  H+++PKFQL+S
Sbjct: 289 LANLTSLQRLDLSSNHLKIPMSLSPLYNLSKLKSFHGLDNEIYAE-EDDHNLSPKFQLQS 347

Query: 83  VALSGSGIHA-TFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSG 141
           + LS  G  A  FP+FLY+Q +L+ +D ++  +KG+F NWL+ENNT L  L L N SLSG
Sbjct: 348 LYLSNHGQGARAFPRFLYHQLNLQSLDLTNIQMKGDFPNWLIENNTYLKNLYLENCSLSG 407

Query: 142 PFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNS 201
           PF +P   H +L  L +S N+ QG IP EIG + PRL  L++S N FNGSIPSS+ +M+ 
Sbjct: 408 PFLLPKNSHMNLSILSISMNYLQGQIPSEIGAHLPRLTVLSMSHNGFNGSIPSSLSNMSL 467

Query: 202 LEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYF 261
           L  LDLS+N LTG IP+HL  S     FL+LS NSL                        
Sbjct: 468 LRDLDLSNNVLTGRIPKHLTTSLCLFNFLILSNNSL------------------------ 503

Query: 262 TGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLN 321
            G IP S+SNCS L+ L +S+NNL   IP W+ ++S                        
Sbjct: 504 QGAIPDSMSNCSSLQLLDVSNNNLSPRIPGWIWSMS------------------------ 539

Query: 322 YLQILDLSENNISGSLP-SCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNS 380
           +L  LDLS NN SG LP + S+ S++  V+LS+N L G L    F+N S+++TLDLS+N+
Sbjct: 540 FLDFLDLSRNNFSGPLPPTISTSSTLRYVYLSRNKLQG-LITKAFYNFSTLLTLDLSHNN 598

Query: 381 FSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNT 440
             G IP WI  L+ LRYL+L+ N LEGE+PIQLC+L  L LIDLS+N++ G I  C+   
Sbjct: 599 LIGTIPEWIGSLSKLRYLLLSYNKLEGEIPIQLCKLDGLTLIDLSHNHLSGNILSCMT-- 656

Query: 441 SLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVD 500
                     SL P       S  +  +     ++ + FTTK +S  Y+G  +    G+D
Sbjct: 657 ----------SLAPF------SALTDATIVETSQQYLEFTTKNVSLIYRGSIVKLFSGID 700

Query: 501 LSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPP 560
            SCN  TG+IPP+I  L++I+ALNLSHN+L G IP TFS L ++ESLD+S+N L+G+IPP
Sbjct: 701 FSCNNFTGKIPPEIENLSKIKALNLSHNSLIGPIPPTFSRLKEIESLDLSHNKLDGEIPP 760

Query: 561 QLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPD-CDVAAVPEA 619
           QL EL +L  FSVAHNNLSGK P   AQF TF+E  Y+ NP LCG+PLP  C  + +P  
Sbjct: 761 QLTELFSLEIFSVAHNNLSGKTPARVAQFATFEESCYKDNPFLCGEPLPKICGASMLPSP 820

Query: 620 S--NEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIE 668
           +  N ED    IDM  FY++F  +Y++V++ I+ VLY+NPYW R WF+  E
Sbjct: 821 TSMNNEDNGGFIDMEVFYVSFGIAYIMVLVVIVAVLYINPYWRRAWFHFTE 871

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 312/709 (44%), Positives = 430/709 (60%), Gaps = 35/709 (4%)

Query: 1    MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
            ++SL++L +  NQ TGNI+ SPL +L S+E L LS N F++P S++PF N+S LK F  E
Sbjct: 595  LSSLQLLDISENQFTGNIAFSPLTNLISLEFLSLSNNLFEVPTSMKPFMNHSSLKFFCNE 654

Query: 61   CNEIFVESESSHSMTPKFQLESVALSGS--GIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
             N + +E  +   + PKFQL   +LS +   ++   P FLY Q+ L ++D S +N+ G F
Sbjct: 655  NNRLVIEPAAFDHLIPKFQLVFFSLSKTTEALNVEIPNFLYYQYHLRFLDLSHNNITGMF 714

Query: 119  LNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL 178
             +WLL+NNT L  L L  NS+ G  ++   P+  +  L +S N   G IP +I + FP L
Sbjct: 715  PSWLLKNNTRLEQLYLSGNSIVGTLQLQDHPYPKMTELDISNNNMSGQIPKDICLIFPNL 774

Query: 179  VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238
              L +++N F G IPS +G+M+SL  LDLS+NQL+    E L      + FL LS N+L 
Sbjct: 775  DGLRMAKNGFTGCIPSCLGNMSSLGVLDLSNNQLSTVKLELLTT----IWFLKLSNNNLG 830

Query: 239  GQLFSKKNYLRKLVSLHLDANYFTGEIPKS-LSNCSHLEGLYMSDNNLYGNIPAWLGNLS 297
            GQ+ +          L+L  N F G+I  S L+       L +S+N   G +P W  N +
Sbjct: 831  GQIPTSMFNSSTSEYLYLGDNNFWGQISDSPLNGWKTWIVLDLSNNQFSGILPRWFVNST 890

Query: 298  SLYDIMMASNHLQGPIPLEF-CQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNML 356
            +L  I ++ NH +GPI   F C+L+ L+ LDLSENN+ G +PSC +   IT VHLSKN L
Sbjct: 891  NLIAIDLSKNHFEGPISRHFFCKLDQLEYLDLSENNLFGYIPSCFNSPQITHVHLSKNRL 950

Query: 357  YGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL 416
             GPL+Y  F+N SS+VT+DL  NSF+G IP W+  L+ L  L+L  N+L+GE+P+QLC L
Sbjct: 951  SGPLKY-EFYNSSSLVTMDLRDNSFTGSIPNWVGNLSSLSVLLLRANHLDGELPVQLCLL 1009

Query: 417  KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDN-----DDSLVPAFNHN----------VR 461
            +QL ++D+S N + G +P CL+N +   +           L+P F             V 
Sbjct: 1010 EQLSILDVSQNQLSGPLPSCLENLTFKESSQKALMNLGGFLLPGFIEKAYNEIMGPPQVN 1069

Query: 462  STYS--AGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTR 519
            S Y+   G      EE I FTTK + + YKGK L+ M G+DLS N   G IPP+   L+ 
Sbjct: 1070 SIYTLLKGYWPNFTEEVIEFTTKNMYYGYKGKILSYMSGIDLSDNNFVGAIPPEFGNLSE 1129

Query: 520  IRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLS 579
            I +LNLSHNNLTG IP TFSNL ++ESLD+SYNN NG IPPQL E+  L  FSVAHNNLS
Sbjct: 1130 ILSLNLSHNNLTGSIPATFSNLKRIESLDLSYNNFNGDIPPQLTEMTTLEVFSVAHNNLS 1189

Query: 580  GKIPEWTAQFTTFKEDSYEGNPLLCGKPLP-DCD--------VAAVPEASNEEDGNSLID 630
            GK PE   QF TF E  YEGNP LCG PL  +C         V + P  ++E++ +  ID
Sbjct: 1190 GKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEVVLSQPVLSQPVPNDEQEDDGFID 1249

Query: 631  MGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFII 679
            M  FYI+F+  Y +V++ I  VLY+NPYW RRW Y IE+ + +C+YF++
Sbjct: 1250 MEFFYISFSVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFVV 1298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 312/713 (43%), Positives = 428/713 (60%), Gaps = 39/713 (5%)

Query: 1    MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
            ++SL++L +  NQ TGNI+S PL +LTS+E L LS N F++P S++PF N+S LK FS E
Sbjct: 296  LSSLQLLDVSENQFTGNIASGPLTNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSE 355

Query: 61   CNEIFVESESSHSMTPKFQLESVALSGS--GIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
             N++  E  +  ++ PKFQL    LS +   ++   P FLY Q+D+  +D S +N+   F
Sbjct: 356  NNKLVTEPAAFDNLIPKFQLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMF 415

Query: 119  LNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL 178
             +WLL+NNT L  L L NNS  G  ++   P+ ++  L +S N   G IP +I + FP +
Sbjct: 416  PSWLLKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNM 475

Query: 179  VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238
              L ++ N F G IPS +G+++SL+ LDLS+NQL+    E L      + FL LS N+L 
Sbjct: 476  WSLRMANNGFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLT----TIWFLKLSNNNLG 531

Query: 239  GQLFSKKNYLRKLVSLHLDANYFTGEIPKSL-SNCSHLEGLYMSDNNLYGNIPAWLGNLS 297
            GQL +       L  L+L  N F G+I   L         L +SDN   G +P WL N +
Sbjct: 532  GQLPTSVFNSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNST 591

Query: 298  SLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLY 357
             L  I ++ N+ +GPI  +FC+LN L+ LDLSENN+SG +PSC S   IT VHLS+N L 
Sbjct: 592  GLIAIDLSKNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLS 651

Query: 358  GPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLK 417
            GPL YG F+N SS+VT+DL  N+F+G  P WI  L+ L  L+L  N+ +GE+P+QLC L+
Sbjct: 652  GPLTYG-FYNNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLE 710

Query: 418  QLRLIDLSNNNIFGQIPGCLDNTSLHNNGDND--DSLVPAFNHNVRSTY--SAGSSTMEK 473
            QL ++D+S N + G +P CL N +   +      D      + ++   Y  + G   +E 
Sbjct: 711  QLSILDVSQNQLSGPLPSCLGNLTFKESSQKTLADLGADVLSRSIEKAYYETMGPPLVES 770

Query: 474  -------------EESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRI 520
                         EE I FTTK + + YKGK L+ M G+DLS N   G IPP+   L++I
Sbjct: 771  MYNLRKGFLLNFTEEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKI 830

Query: 521  RALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG 580
             +LNLSHNNLTG IP TFSNL Q+ESLD+SYNNLNG IPPQL ++  L  FSVAHNNLSG
Sbjct: 831  LSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSG 890

Query: 581  KIPEWTAQFTTFKEDSYEGNPLLCGKPLP-DCDVAAVPEAS-------------NEEDGN 626
              PE   QF TF E  YEGNP LCG PL  +C   AVP                +E+  +
Sbjct: 891  NTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDD 950

Query: 627  SLIDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFII 679
              IDM  FYI F   Y +V++ I+ VLY++PYW RRW Y IE+ + +C+YF++
Sbjct: 951  GFIDMEFFYINFGVCYTVVVMIIVVVLYIDPYWRRRWSYFIEDCIDTCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 308/704 (43%), Positives = 411/704 (58%), Gaps = 31/704 (4%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           ++SL++L +  NQ TGN +S PL +L S+E L LS N F++P S++PF N+S LK FS E
Sbjct: 245 LSSLQLLDVSENQFTGNFTSGPLTNLISLEFLLLSNNLFEVPISMKPFLNHSSLKFFSSE 304

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATF---PKFLYNQHDLEYVDFSDSNLKGE 117
            N +  E  +  ++ PKFQL    LS S         P FLY Q DL  +D S +N+ G 
Sbjct: 305 NNRLVTEPVAFDNLIPKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGM 364

Query: 118 FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
           F +WLL+NNT L  L L  N   G  ++   P+ ++  L +S N   G I  +I + FP 
Sbjct: 365 FPSWLLKNNTRLEQLYLSANFFVGTLQLQDHPYSNMVELDISNNNMSGQISKDICLIFPN 424

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
           L  L +++N F G IPS +G+++SL  LDLS+NQL+    E L      +  L LS NSL
Sbjct: 425 LWTLRMAKNGFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQLT-----IPVLKLSNNSL 479

Query: 238 LGQLFSKKNYLRKLVSLHLDANYFTGEIPK-SLSNCSHLEGLYMSDNNLYGNIPAWLGNL 296
            GQ+ +          L+L+ N F+G+I    L     L  L +S+N   G +P    N 
Sbjct: 480 GGQIPTSVFNSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLDLSNNQFSGMLPRIFVNF 539

Query: 297 SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNML 356
           + L  + ++ NH +GPIP +FC+L  LQ LDLSENN+SG +PSC S   +T VHLSKN L
Sbjct: 540 TDLRVLDLSKNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNRL 599

Query: 357 YGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL 416
            GPL YG FFN S +VT+DL  NS +G IP WI   + L  L+L  N+ +GE+P+QLC L
Sbjct: 600 SGPLTYG-FFNSSYLVTMDLRDNSLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLL 658

Query: 417 KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDND----------DSLVPAFNHN-----VR 461
           +QL ++D+S N + G +P CL N +   +              +S+  A+        V 
Sbjct: 659 EQLSILDVSQNQLSGPLPSCLGNLTFKESSQKARMDLGASIVLESMEKAYYKTMGPPLVD 718

Query: 462 STYSAGSSTME--KEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTR 519
           S Y  G        EE I F TK + + YKG  L+ M G+DLS N   G IP +   L+ 
Sbjct: 719 SVYLLGKDFRLNFTEEVIEFRTKNMYYGYKGNILSYMSGIDLSNNNFGGAIPQEFGNLSE 778

Query: 520 IRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLS 579
           IR+LNLSHNN T  IP TFSNL Q+ESLD+SYNNLNG IPPQL E+  L  FSVAHNNLS
Sbjct: 779 IRSLNLSHNNPTESIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLS 838

Query: 580 GKIPEWTAQFTTFKEDSYEGNPLLCGKPLP-DCDVAAV---PEASNEEDGNSLIDMGSFY 635
           G  PE   QF TF E  YEGNP LCG PL  +C V  V   P   +E+     IDM  FY
Sbjct: 839 GWTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSVEPVSSQPVPDDEQGDVGFIDMEFFY 898

Query: 636 ITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFII 679
           I+F   Y +V++ I  VLY+NPYW RRW Y IE+ + +C+YF++
Sbjct: 899 ISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFMV 942

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 304/700 (43%), Positives = 420/700 (60%), Gaps = 27/700 (3%)

Query: 1    MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
            ++SL++L +  NQ  GNI+SSPL +L S+E + LS N FQ+P S++PF N+S L+ FS +
Sbjct: 312  LSSLQLLDVSRNQFIGNIASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSSLRFFSSD 371

Query: 61   CNEIFVESESSHSMTPKFQLESVALSGS---GIHATFPKFLYNQHDLEYVDFSDSNLKGE 117
             N +  E  S H + PKFQL   +LS S    ++   P FLYNQHDL  +D S ++  G 
Sbjct: 372  NNRLVTEPMSFHDLIPKFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDLSQNSFIGM 431

Query: 118  FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
            F +WLL+NNT L  L L  NS  G  ++   P+  +  + +S N   G IP  I + F  
Sbjct: 432  FPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSN 491

Query: 178  LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
            L  L +++N   G IPS +G+ +SL  LDLS+NQL+    E        L FL LS N+L
Sbjct: 492  LWTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQF----ITLTFLKLSNNNL 547

Query: 238  LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHL-EGLYMSDNNLYGNIPAWLGNL 296
             GQL +      +L  L+L  N F G+I    S    +   L +S+N   G +P W  NL
Sbjct: 548  GGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPVLDLSNNQFSGMLPRWFVNL 607

Query: 297  SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNML 356
            + ++ I ++ NH  GPIP+EFC+L+ L+ LDLS+NN+  S+PSC +   IT VHLSKN L
Sbjct: 608  TQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVHLSKNRL 667

Query: 357  YGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL 416
             GPL YG F+N SS+VTLDL  N+F+G I  WI  L+ L  L+L  NN +GE  +QLC L
Sbjct: 668  SGPLTYG-FYNSSSLVTLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEFLVQLCLL 726

Query: 417  KQLRLIDLSNNNIFGQIPGCLDNTSL-------------HNNGDNDDSLVPAFNHNVRST 463
            +QL ++D+S N + G +P CL N S              H      +     FN   R+ 
Sbjct: 727  EQLSILDVSQNQLSGPLPSCLGNLSFKESYEKASVDFGFHFGSTPIEKAYYEFNQ-TRAL 785

Query: 464  YSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRAL 523
              +    +  EE I FT K + + YKGK L+ M G+DLS NK +G IPP++  L+ + AL
Sbjct: 786  LGSSYIPITTEEVIEFTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNLSELLAL 845

Query: 524  NLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583
            NLSHNNLTG IP TFSNL Q+ES D+SYNNL+G IP +L E+  L  FSVAHNNLSG+ P
Sbjct: 846  NLSHNNLTGSIPATFSNLKQIESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNNLSGETP 905

Query: 584  EWTAQFTTFKEDSYEGNPLLCGKPLP-DC---DVAAVPEASNEEDGNSLIDMGSFYITFT 639
            E   QF TF E SYEGNP LCG PL  +C   +  ++P  +++++ +  IDM  FYI+  
Sbjct: 906  ERKYQFGTFDESSYEGNPFLCGPPLQNNCSEEESPSLPMPNDKQEDDGFIDMNFFYISLG 965

Query: 640  SSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFII 679
              Y++V++ I  VLY+NPYW   WF  I+  + +CF F++
Sbjct: 966  VGYIVVVMGIAAVLYINPYWRCGWFNFIDYCIDTCFNFLL 1005

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 306/701 (43%), Positives = 420/701 (59%), Gaps = 39/701 (5%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           ++SL +L +  NQ TGNI S PL +L S+E L LS N F++P S++PF N+S LK FS E
Sbjct: 271 LSSLTLLDVSENQFTGNIVSGPLTNLVSLEFLSLSNNLFEVPTSMKPFMNHSSLKFFSSE 330

Query: 61  CNEIFVESESSHSMTPKFQLESVAL--SGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
            N +  E  +  ++ PKFQL  ++L  +   ++   P FLY Q+DL  +D S +N+ G F
Sbjct: 331 NNRLVTEPAAFDNLIPKFQLVFLSLLKTTEALNVHIPDFLYYQYDLRVLDLSHNNITGMF 390

Query: 119 LNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL 178
            +WLL+NNT +  L L +NS  G  ++P  P+ ++  L +S N     IP +I +  P L
Sbjct: 391 PSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYPNMTKLDISNNNMNSQIPKDICLILPNL 450

Query: 179 VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238
             L + +N F G IPS +G+++SL  LDLS+NQL+    E L      L FL LS N+L 
Sbjct: 451 ESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQLSTVKLELLT----TLMFLKLSNNNLG 506

Query: 239 GQLFSKKNYLRKLVSLHLDANYFTGEIPK-SLSNCSHLEGLYMSDNNLYGNIPAWLGNLS 297
           GQ+         L  L+L+ N F G+I   SL        L +S+N   G +P W  N +
Sbjct: 507 GQIPISVFNSSTLEFLYLNGNNFCGQILYLSLYEQKMWFVLDLSNNQFSGMLPRWFVNST 566

Query: 298 SLYDIMMASNHLQGPIPLEF-CQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNML 356
            L  I ++ NH +GPIP +F C+ ++L+ LDLSENN+SG +PSC S   IT +HLSKN L
Sbjct: 567 VLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLSENNLSGYIPSCFSPPQITHLHLSKNRL 626

Query: 357 YGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL 416
            GPL YG F+N SS+VT+DL  NSF+  IP WI  L+ L  L+L  N+ +          
Sbjct: 627 SGPLTYG-FYNSSSLVTMDLQDNSFTDSIPNWIGNLSSLSVLLLRANHFD---------- 675

Query: 417 KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDND--DSLVPAFNHNVRSTY--SAGSSTME 472
           +QL ++D+S N + G +P CL N +   +      D ++   + ++  TY  + G   ++
Sbjct: 676 EQLSILDVSQNQLSGPLPSCLGNLTFKESSQKAILDFVIFDISRSIEKTYYETMGPPLVD 735

Query: 473 K------------EESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRI 520
                        EE I FTTK++S+ YKGK LN M G+DLS N   G IPP+   L+ I
Sbjct: 736 SVYLGKGFGLNLIEEVIEFTTKKMSYGYKGKVLNYMSGIDLSNNNFVGAIPPEFGNLSEI 795

Query: 521 RALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG 580
            +LNLSHNNLTG IP TFSNL Q+ESLD+SYNNLNG IPPQL E+  L  FSVAHNNLSG
Sbjct: 796 LSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSG 855

Query: 581 KIPEWTAQFTTFKEDSYEGNPLLCGKPLP-DCDVAAV---PEASNEEDGNSLIDMGSFYI 636
           K PE   QF TF E  YEGNP LCG PL  +C   AV   P  ++E+  +  +DM  FYI
Sbjct: 856 KTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVSSQPVPNDEQGDDGFVDMEFFYI 915

Query: 637 TFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYF 677
           +F   Y +V++ I  VLY+NPYW RRW + IE+ + +C+YF
Sbjct: 916 SFGVCYTVVVMTIAAVLYINPYWRRRWLFFIEDCIDTCYYF 956

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	699
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.975	0.682	0.372	2.7e-107
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.949	0.680	0.362	2.3e-94
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.872	0.563	0.372	7.8e-94
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.938	0.736	0.340	3.1e-90
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.915	0.684	0.345	1.6e-79
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.891	0.686	0.346	4.3e-77
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.822	0.595	0.340	1.1e-76
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.879	0.524	0.302	1.2e-59
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.894	0.500	0.300	2.3e-56
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.899	0.570	0.289	1.9e-55

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
 Identities = 265/712 (37%), Positives = 376/712 (52%)

Query:     1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVF--S 58
             +T LRVL L  NQLTGN+ S+ L +L S+E L L  N F+  FSL    N SKLKV    
Sbjct:   281 LTGLRVLDLSSNQLTGNVPSA-LANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLD 339

Query:    59 GECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
              + N + VE E+S    PKFQL  +AL    +    P FL +Q DL +VD SD+ + G F
Sbjct:   340 SQSNSLEVEFETSWK--PKFQLVVIALRSCNLEKV-PHFLLHQKDLHHVDLSDNQIHGNF 396

Query:   119 XXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL 178
                                  +  F++P   H +L  L VS N F        G   P L
Sbjct:   397 PSWLLENNTKLEVLLLQNNSFTS-FQLPKSAH-NLLFLNVSVNKFNHLFLQNFGWILPHL 454

Query:   179 VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238
             V +NL+ N F G++PSS+ +M S+E LDLSHN+  G++P      C+NL  L LS N L 
Sbjct:   455 VCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLS 514

Query:   239 GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS 298
             G++F +     +L  + +D N FTG I K   +   L  L +S+N L G IP+W+G    
Sbjct:   515 GEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQG 574

Query:   299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHL-SKNMLY 357
             L+ + +++N L+G IP     ++YLQ+LDLS N +               V L   N L 
Sbjct:   575 LFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNNNLS 634

Query:   358 GPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLK 417
             G +      N   ++ LDL  N  SG +P +I     +  L+L  NN  G++P Q C L 
Sbjct:   635 GVIPDTLLLN---VIVLDLRNNRLSGNLPEFINTQN-ISILLLRGNNFTGQIPHQFCSLS 690

Query:   418 QLRLIDLSNNNIFGQIPGCLDNTSLH-NNGDNDDSL-VPA-FNHNVRSTYSAGSSTMEK- 473
              ++L+DLSNN   G IP CL NTS     GD+     VP+ F       Y      +++ 
Sbjct:   691 NIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDEF 750

Query:   474 --------EESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNL 525
                     +  I F TK    +Y G  L  ++G+DLS N+L+GEIP ++  L  + ALNL
Sbjct:   751 NMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNL 810

Query:   526 SHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEW 585
             SHNNL+GVI  +FS L  VESLD+S+N L G IP QL ++ +LA F+V++NNLSG +P+ 
Sbjct:   811 SHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQG 870

Query:   586 TAQFTTFKEDSYEGNPLLCGKPLPDCDVAAV---PEASNEEDGNSLIDMGSFYITFTSSY 642
               QF TF+  SY GNPLLCGK + D   A+    P  +  E   S +DM SFY +F ++Y
Sbjct:   871 R-QFNTFETQSYFGNPLLCGKSI-DISCASNNFHPTDNGVEADESTVDMESFYWSFVAAY 928

Query:   643 VIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFIIDNLIPTRFYHACMQL 694
             V ++L I+  L  +  W R WFY+++ ++      +  N   T+  +  + L
Sbjct:   929 VTILLGILASLSFDSPWSRAWFYIVDAFVLKVRNMLWQNTAGTKCSYVLVSL 980

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 253/697 (36%), Positives = 361/697 (51%)

Query:     1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
             +  LRVL L  NQL+GN+ +S    L S+E L LS N F+  FSL P  N +KLKVF   
Sbjct:   283 LNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLS 341

Query:    61 CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFXX 120
                  ++ E+  +  PKFQL   AL    +    P FL  Q +L  VD S + L G+   
Sbjct:   342 STSEMLQVETESNWLPKFQLTVAALPFCSL-GKIPNFLVYQTNLRLVDLSSNRLSGDIPT 400

Query:   121 XXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
                                +  F++P   H  L  L  S N   G +P  IG   PRL++
Sbjct:   401 WLLENNPELKVLQLKNNSFT-IFQIPTIVH-KLQVLDFSANDITGVLPDNIGHVLPRLLH 458

Query:   181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
             +N S N F G++PSS+G+MN +  LDLS+N  +GE+P  L   CF+L  L LS NS  G 
Sbjct:   459 MNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGP 518

Query:   241 LFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS-L 299
             +   +  L  L+ L +  N FTGEI   L    +L     S+N L G I + +   SS L
Sbjct:   519 ILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHL 578

Query:   300 YDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXI-TQVHLSKNMLYG 358
               +++++N L+G +P     +++L  LDLS N +               ++ L  N   G
Sbjct:   579 IMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTG 638

Query:   359 PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQ 418
             PL   T    + I  LDL  N  SG IP ++     +  L+L  NNL G +P +LC L  
Sbjct:   639 PLPV-TLLENAYI--LDLRNNKLSGSIPQFVNTGKMIT-LLLRGNNLTGSIPRKLCDLTS 694

Query:   419 LRLIDLSNNNIFGQIPGCLDN--TSLHNN-GDNDDSLVPAFNHNV-----RSTYSAGSST 470
             +RL+DLS+N + G IP CL++  T L    G +  S   +F  ++     RST+      
Sbjct:   695 IRLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEFYRSTFLVDEFM 754

Query:   471 MEKEESIM-----FTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNL 525
             +  + + M     F  K+   S+ G  L+ MYG+DLS N+L+G IP ++  L+++RALNL
Sbjct:   755 LYYDSTYMIVEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNL 814

Query:   526 SHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEW 585
             S N L+  IP  FS L  +ESLD+SYN L G IP QL  L +LA F+V+ NNLSG IP+ 
Sbjct:   815 SRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQG 874

Query:   586 TAQFTTFKEDSYEGNPLLCGKPLP-DCDVAA-VPEASN-----EEDGN--SLIDMGSFYI 636
               QF TF ++SY GNPLLCG P    C+      EA N     EED +  + IDM   Y 
Sbjct:   875 -GQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYW 933

Query:   637 TFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTS 673
             T  S+Y I ++ I+ ++  +  W R W  +++ ++ S
Sbjct:   934 TTGSTYAIALIGILVLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 237/637 (37%), Positives = 339/637 (53%)

Query:     1 MTSLRVLSLDLNQLTGNISSSPLIHLTSI-ERLFLSYNQFQIPFSLEPFFNNSKLKVF-- 57
             +T LR L L  NQL GN+SS  +  L S+ E L L  N F   F      N ++L VF  
Sbjct:   380 LTHLRTLDLSNNQLNGNLSSF-VSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKL 438

Query:    58 SGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGE 117
             S +   I V++ESS +  P FQL+ + LS   + +T   FL +Q DL +VD S + L G 
Sbjct:   439 SSKVGVIQVQTESSWA--PLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGT 496

Query:   118 FXXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
             F                     +   ++PI  H  L  L +S N    +I  +IG+ FP 
Sbjct:   497 FPTWLVKNNTRLQTILLSGNSLT-KLQLPILVHG-LQVLDISSNMIYDSIQEDIGMVFPN 554

Query:   178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
             L ++N S N F G+IPSSIG+M SL+ LD+S N L G++P      C++L  L LS N L
Sbjct:   555 LRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQL 614

Query:   238 LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS 297
              G++FSK   L  LV L LD N FTG + + L    +L  L +SDN   G +P W+G +S
Sbjct:   615 QGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRIS 674

Query:   298 SLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLY 357
              L  + M+ N L+GP P    Q  +++++D+S N+             + ++ L  N   
Sbjct:   675 RLSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFT 733

Query:   358 GPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLK 417
             G L  G  F  + +  LDL  N+FSG I   I++ + LR L+L NN+ +  +P ++C+L 
Sbjct:   734 G-LVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLS 792

Query:   418 QLRLIDLSNNNIFGQIPGCLDNTSLH-NNGDNDDSLVPAFNHNV-----RSTYSA----- 466
             ++ L+DLS+N   G IP C    S      D   SLV  F+ +         Y +     
Sbjct:   793 EVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLD 852

Query:   467 -G--SSTMEKEESIM-FTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRA 522
              G  +    K  +++ F TK    +Y+G  L  M+G+DLS N+L+GEIP +I  L  IR+
Sbjct:   853 DGVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRS 912

Query:   523 LNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKI 582
             LNLS N LTG IP + S L  +ESLD+S N L+G IPP L +LN+L + ++++NNLSG+I
Sbjct:   913 LNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEI 972

Query:   583 PEWTAQFTTFKEDSYEGNPLLCGKPL-PDCDVAAVPE 618
             P +     TF E SY GN  LCG P   +C    VPE
Sbjct:   973 P-FKGHLVTFDERSYIGNAHLCGLPTNKNCISQRVPE 1008

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 236/694 (34%), Positives = 361/694 (52%)

Query:     2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVF--SG 59
             + LRVL L  N L+G I    +    S+E L L  N F+  FSL      ++LKVF  S 
Sbjct:   202 SKLRVLDLSSNHLSGKIPYF-ISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSS 260

Query:    60 ECNEI-FVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
                 +  VE+  S  +  + QL S+ LS   +    P FL+ Q +L  +D S++ L G F
Sbjct:   261 RSGMLQIVETNVSGGL--QSQLSSIMLSHCNL-GKIPGFLWYQQELRVIDLSNNILSGVF 317

Query:   119 XXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL 178
                                       +P +    L  L +S N F   +P ++G+    L
Sbjct:   318 PTWLLENNTELQALLLQNNSFK-TLTLP-RTMRRLQILDLSVNNFNNQLPKDVGLILASL 375

Query:   179 VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238
              +LNLS N+F G++PSS+  M ++E +DLS+N  +G++P +L   C++L +L LS N   
Sbjct:   376 RHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFS 435

Query:   239 GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS 298
             G +  K +    L++L +D N FTG+IP++L N   L  + +S+N L G IP WLGN   
Sbjct:   436 GPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFF- 494

Query:   299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYG 358
             L  + +++N LQG IP     + YL +LDLS N +               + L  N L G
Sbjct:   495 LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSSDYGYILDLHNNNLTG 554

Query:   359 PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLT-YLRYLILANNNLEGEVPIQLCRLK 417
              +    ++    +  LDL  N  SG IP +  R T  +  ++L  NNL G++P++LC L 
Sbjct:   555 SIPDTLWYG---LRLLDLRNNKLSGNIPLF--RSTPSISVVLLRENNLTGKIPVELCGLS 609

Query:   418 QLRLIDLSNNNIFGQIPGCLDNTSL----HNNGDND---DSLVPAFNHNVRSTYSAG--- 467
              +R++D ++N +   IP C+ N S     H+N D+D    SL+  F       Y      
Sbjct:   610 NVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLIV 669

Query:   468 SSTMEKEESIMFTTKEISFSYKGK-------PLNKMYGVDLSCNKLTGEIPPQISKLTRI 520
             S     + S+ F   ++ F+ K +        LN+M+G+DLS N+L+G IP ++  L R+
Sbjct:   670 SDRFSLDYSVDFNV-QVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRV 728

Query:   521 RALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG 580
             R+LNLS N+L+G IP +FSNL  +ESLD+S+N L+G IP QL  L +L  F+V++NNLSG
Sbjct:   729 RSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSG 788

Query:   581 KIPEWTAQFTTFKEDSYEGNPLLCGKPLP-DCDVAAVPEASNEEDGNS--LIDMGSFYIT 637
              IP+   QF TF E SY GN LLCG P    C    +      ED +   L+D+   + +
Sbjct:   789 VIPQGK-QFNTFGEKSYLGNFLLCGSPTKRSCGGTTISSGKEYEDDDESGLLDIVVLWWS 847

Query:   638 FTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWM 671
               ++YV V++  +  L  +  W R WF L++ ++
Sbjct:   848 LGTTYVTVMMGFLVFLCFDSPWRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 233/675 (34%), Positives = 326/675 (48%)

Query:     1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERL-FLSYNQFQIPFSLEPFFNN-SKLKVFS 58
             + +LR L L  N   G I   PL  L S+++L  L  +  Q+   L   F++   L+  S
Sbjct:   245 LKNLRDLDLKGNHFVGQI---PLC-LGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLS 300

Query:    59 GECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
                N  F  S S + +T    L+ V +         P FL  Q  L  VD S +NL G  
Sbjct:   301 LSDNN-FDGSFSLNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNI 359

Query:   119 XXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL 178
                                  +  F +P   H +L     S N   G  P ++    P L
Sbjct:   360 PTWLLTNNPELEVLQLQNNSFT-IFPIPTMVH-NLQIFDFSANNI-GKFPDKMDHALPNL 416

Query:   179 VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238
             V LN S N F G  P+SIG+M ++  LDLS+N  +G++P      C ++ FL LS N   
Sbjct:   417 VRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFS 476

Query:   239 GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS 298
             G+   ++     L  L +D N FTG I   LSN + L  L MS+N L G IP WL     
Sbjct:   477 GRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPY 536

Query:   299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYG 358
             L  +++++N L+G IP     + +L  LDLS N                 + L  N   G
Sbjct:   537 LDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTG 596

Query:   359 PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQ 418
             P+   T     S+  LDL  N  SG IP + +  + +  L+L  NNL G +P +LC L  
Sbjct:   597 PIP-DTLLK--SVQILDLRNNKLSGSIPQFDDTQS-INILLLKGNNLTGSIPRELCDLSN 652

Query:   419 LRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSL--VPAFNHN------VRSTYSAGSST 470
             +RL+DLS+N + G IP CL N S     ++  +L   P+F          +ST+      
Sbjct:   653 VRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMALNIPPSFLQTSLEMELYKSTFLVDKIE 712

Query:   471 MEK----EESIMFTTKEISFSYKGKP------LNKMYGVDLSCNKLTGEIPPQISKLTRI 520
             +++    E  I F  K+   SY G+       L  MYG+DLS N+L+G IP ++  L ++
Sbjct:   713 VDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKL 772

Query:   521 RALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG 580
             R LNLSHN+L G IP +FS L  VESLD+S+N L G IP  L  L +LA F V+ NNLSG
Sbjct:   773 RTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSG 832

Query:   581 KIPEWTAQFTTFKEDSYEGNPLLCGKPLP-DCDVAAVPE-ASNEEDGNSLIDMGSFYITF 638
              IP+   QF TF+E+SY GNPLLCG P    C+    PE A N ++           + +
Sbjct:   833 IIPQGR-QFNTFEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFY 891

Query:   639 TSSYVIVILAIIGVL 653
              S+  I + A+IGVL
Sbjct:   892 FSTASIYVTALIGVL 906

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 229/661 (34%), Positives = 323/661 (48%)

Query:    26 LTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVAL 85
             L S+E L LS N F+  FSL P  N +KLKVF     +  V+ +   +  P FQL  + L
Sbjct:   267 LESLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVL 326

Query:    86 SGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFXXXXXXXXXXXXXXXXXXXXXSGPFRM 145
                 +    P FL  Q +L  VD S + + G                       +  F+M
Sbjct:   327 RLCSLEK-IPNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQM 384

Query:   146 PIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEAL 205
             P   H +L  L  S+N   G  P   G   P LV++N S N F G+ PSS+G+M ++  L
Sbjct:   385 PTSVH-NLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFL 443

Query:   206 DLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEI 265
             DLS+N L+GE+P+    SCF+L  L LS N   G    ++     L+ L ++ N FTG+I
Sbjct:   444 DLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKI 503

Query:   266 PKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQI 325
                L     L  L MS+N L G +P  L     L  + ++ N L G +P      N   +
Sbjct:   504 GVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDN---V 560

Query:   326 LDLSENNIXXXXXXXXXXXXITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI 385
             L L  NN             I  + L  N L G +    F +   I  L L  NS +GYI
Sbjct:   561 LFLHNNNFTGPIPDTFLGS-IQILDLRNNKLSGNIPQ--FVDTQDISFLLLRGNSLTGYI 617

Query:   386 PYWIERLTYLRYLILANNNLEGEVPIQLCRLK--QLRLIDLSNNNIFGQIPGCLDNTSLH 443
             P  +   + +R L L++N L G +P     L     R  +++N      +   L++  L 
Sbjct:   618 PSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNY----YVAVALESFYL- 672

Query:   444 NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGK------PLNKMY 497
               G    + V     N R  YS   +  E +  + F TK+   SY G        LN MY
Sbjct:   673 --GFYKSTFVV---ENFRLDYS---NYFEID--VKFATKQRYDSYIGAFQFSEGTLNSMY 722

Query:   498 GVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGK 557
             G+DLS N+L+G IP ++  L ++RALNLSHN L+  IP +FS L  +ESLD+SYN L G 
Sbjct:   723 GLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGS 782

Query:   558 IPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLP-DCDVAAV 616
             IP QL  L +LA F+V++NNLSG IP+   QF TF E+SY GNPLLCG P    C+    
Sbjct:   783 IPHQLTNLTSLAIFNVSYNNLSGIIPQGK-QFNTFDENSYLGNPLLCGPPTDTSCETKKN 841

Query:   617 PEAS---NEEDGNSL-IDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMT 672
              E +    EED   + IDM  FY +   +YV  ++ I+ ++ V+  W R W  L++ ++ 
Sbjct:   842 SEENANGGEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFIA 901

Query:   673 S 673
             S
Sbjct:   902 S 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 205/602 (34%), Positives = 304/602 (50%)

Query:     1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFS-- 58
             +T LRVL L  N+LTG + SS L  L S+E L L  N F+  FS     N S L V    
Sbjct:   267 LTGLRVLDLSSNKLTGTVPSS-LGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLC 325

Query:    59 GECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
              + + + V SESS    PKFQL  +AL    +    P FL +Q DL +VD SD+N+ G+ 
Sbjct:   326 SKSSSLQVLSESSWK--PKFQLSVIALRSCNMEKV-PHFLLHQKDLRHVDLSDNNISGKL 382

Query:   119 XXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL 178
                                  +  F++P   H +L  L VS N F    P  IG  FP L
Sbjct:   383 PSWLLANNTKLKVLLLQNNLFTS-FQIPKSAH-NLLFLDVSANDFNHLFPENIGWIFPHL 440

Query:   179 VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238
              YLN S+N+F  ++PSS+G+MN ++ +DLS N   G +P      C+++  L LS N L 
Sbjct:   441 RYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLS 500

Query:   239 GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS 298
             G++F +      ++ L +D N FTG+I + L +  +LE L MS+NNL G IP+W+G L S
Sbjct:   501 GEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPS 560

Query:   299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYG 358
             L  ++++ N L+G IP+     + LQ+LDLS N++               + L  N L G
Sbjct:   561 LTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSG 620

Query:   359 PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQ 418
              +   T    +++  LDL  N FSG IP +I  +  +  L+L  NN  G++P QLC L  
Sbjct:   621 TIP-DTLL--ANVEILDLRNNRFSGKIPEFIN-IQNISILLLRGNNFTGQIPHQLCGLSN 676

Query:   419 LRLIDLSNNNIFGQIPGCLDNTSLHNNGD---NDDSLVPAFNHNVRSTYSAGSS-TMEKE 474
             ++L+DLSNN + G IP CL NTS     +    D     +F  +V + +S     +  K 
Sbjct:   677 IQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKN 736

Query:   475 ESIMF----TTKEISFSYKGKPLNKM-YGVDLSCNKLTGEIPPQISKLTRIRALNLSHNN 529
               I F    T   +S  YK     K+ +      +   G        L  +  ++LS N 
Sbjct:   737 GGIYFKSLLTLDPLSMDYKAATQTKIEFATKHRYDAYMG------GNLKLLFGMDLSENE 790

Query:   530 LTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQF 589
             L+G IPV F  L ++ +L++S+NNL+G IP  +  +  +  F ++ N L G+IP    + 
Sbjct:   791 LSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTEL 850

Query:   590 TT 591
             T+
Sbjct:   851 TS 852

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
 Identities = 196/648 (30%), Positives = 288/648 (44%)

Query:    12 NQLTGNI--SSSPLIHLTSIERLFLSYNQF--QIPFSLEPFFNNSKLKVFSGECNEIFVE 67
             N LTG+I  S   L +LT ++   LS NQ   +IP       N   L V +    E  + 
Sbjct:   202 NHLTGSIPVSIGTLANLTDLD---LSGNQLTGKIPRDFGNLLNLQSL-VLTENLLEGDIP 257

Query:    68 SESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFXXXXXXXXX 127
             +E  +  +   QLE   L  + +    P  L N   L+ +    + L             
Sbjct:   258 AEIGNCSS-LVQLE---LYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQ 313

Query:   128 XXXXXXXXXXXXSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRND 187
                          GP    I     L+ L +  N F G  P  I      L  L +  N+
Sbjct:   314 LTHLGLSENHLV-GPISEEIGFLESLEVLTLHSNNFTGEFPQSI-TNLRNLTVLTVGFNN 371

Query:   188 FNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNY 247
              +G +P+ +G + +L  L    N LTG IP  ++ +C  L+ L LS N + G++   + +
Sbjct:   372 ISGELPADLGLLTNLRNLSAHDNLLTGPIPSSIS-NCTGLKLLDLSHNQMTGEI--PRGF 428

Query:   248 LR-KLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMAS 306
              R  L  + +  N+FTGEIP  + NCS+LE L ++DNNL G +   +G L  L  + ++ 
Sbjct:   429 GRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSY 488

Query:   307 NHLQGPIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQ-VHLSKNMLYGPLRYGTF 365
             N L GPIP E   L  L IL L  N              + Q + +  N L GP+     
Sbjct:   489 NSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPE-EM 547

Query:   366 FNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLS 425
             F+   +  LDLS N FSG IP    +L  L YL L  N   G +P  L  L  L   D+S
Sbjct:   548 FDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDIS 607

Query:   426 NNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRS-TYSAGSSTMEKEESIMFTTKEI 484
             +N + G IPG L   SL N       L   F++N+ + T       +E  + I  +    
Sbjct:   608 DNLLTGTIPGEL-LASLKNM-----QLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLF 661

Query:   485 SFSYKG--KPLNKMYGVDLSCNKLTGEIPPQISK-LTRIRALNLSHNNLTGVIPVTFSNL 541
             S S     +    ++ +D S N L+G IP ++ + +  I +LNLS N+ +G IP +F N+
Sbjct:   662 SGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNM 721

Query:   542 NQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNP 601
               + SLD+S NNL G+IP  L  L+ L    +A NNL G +PE +  F         GN 
Sbjct:   722 THLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASDLMGNT 780

Query:   602 LLCG--KPLPDCDVAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVIL 647
              LCG  KPL  C +       ++     LI +GS         +++IL
Sbjct:   781 DLCGSKKPLKPCTIKQKSSHFSKRTRVILIILGSAAALLLVLLLVLIL 828

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 2.3e-56, P = 2.3e-56
 Identities = 198/659 (30%), Positives = 314/659 (47%)

Query:     1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQF--QIPFSLEPFFNNSKLKVFS 58
             M+ L+ LSL  NQL G I  S L  L +++ L LS N    +IP   E F+N S+L    
Sbjct:   262 MSQLQYLSLMANQLQGLIPKS-LADLGNLQTLDLSANNLTGEIP---EEFWNMSQLLDLV 317

Query:    59 GECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
                N +      S   +    LE + LSG+ +    P  L     L+ +D S+++L G  
Sbjct:   318 LANNHLSGSLPKS-ICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSI 376

Query:   119 XXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL 178
                                   G     I    +L  L +  N  +G +P EI     +L
Sbjct:   377 PEALFELVELTDLYLHNNTL-EGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISA-LRKL 434

Query:   179 VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238
               L L  N F+G IP  IG+  SL+ +D+  N   GEIP  +      L  L L +N L+
Sbjct:   435 EVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGR-LKELNLLHLRQNELV 493

Query:   239 GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS 298
             G L +      +L  L L  N  +G IP S      LE L + +N+L GN+P  L +L +
Sbjct:   494 GGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRN 553

Query:   299 LYDIMMASNHLQGPI-PLEFC-QLNYLQILDLSENNIXXXX-XXXXXXXXITQVHLSKNM 355
             L  I ++ N L G I PL  C   +YL   D++ N               + ++ L KN 
Sbjct:   554 LTRINLSHNRLNGTIHPL--CGSSSYLSF-DVTNNGFEDEIPLELGNSQNLDRLRLGKNQ 610

Query:   356 LYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR 415
             L G + + T      +  LD+S N+ +G IP  +     L ++ L NN L G +P  L +
Sbjct:   611 LTGKIPW-TLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGK 669

Query:   416 LKQLRLIDLSNNNIFGQIPGCLDN-TSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKE 474
             L QL  + LS+N     +P  L N T L     + +SL  +    + +  +     ++K 
Sbjct:   670 LSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKN 729

Query:   475 ESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIR-ALNLSHNNLTGV 533
             +      + +     GK L+K+Y + LS N LTGEIP +I +L  ++ AL+LS+NN TG 
Sbjct:   730 QFSGSLPQAM-----GK-LSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGD 783

Query:   534 IPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFK 593
             IP T   L+++E+LD+S+N L G++P  + ++ +L + +V+ NNL GK+ +   QF+ + 
Sbjct:   784 IPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK---QFSRWP 840

Query:   594 EDSYEGNPLLCGKPLPDCDVAAVPEASNEEDG---NSLIDMGSFYITFTSSYVIVILAI 649
              DS+ GN  LCG PL  C+      ++N++ G    S++ + +         +I+++A+
Sbjct:   841 ADSFLGNTGLCGSPLSRCNRV---RSNNKQQGLSARSVVIISAISALTAIGLMILVIAL 896

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 1.9e-55, P = 1.9e-55
 Identities = 194/671 (28%), Positives = 307/671 (45%)

Query:     2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQ--IPFSLEPFFNNSKLKVFSG 59
             +SL +L L+ NQ  G I    +  L S+E L +  N+    +P  +    + S+L  +S 
Sbjct:   121 SSLEILKLNNNQFDGEIPVE-IGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSN 179

Query:    60 ECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFX 119
               +     S  +      F+     +SGS      P  +     L  +  + + L GE  
Sbjct:   180 NISGQLPRSIGNLKRLTSFRAGQNMISGS-----LPSEIGGCESLVMLGLAQNQLSGELP 234

Query:   120 XXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLV 179
                                 SG     I     L+TL + KN   G IP E+G     L 
Sbjct:   235 KEIGMLKKLSQVILWENEF-SGFIPREISNCTSLETLALYKNQLVGPIPKELGD-LQSLE 292

Query:   180 YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG 239
             +L L RN  NG+IP  IG+++    +D S N LTGEIP  L  +   LE L L EN L G
Sbjct:   293 FLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELG-NIEGLELLYLFENQLTG 351

Query:   240 QLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSD---NNLYGNIPAWLGNL 296
              +  + + L+ L  L L  N  TG IP       +L GL+M     N+L G IP  LG  
Sbjct:   352 TIPVELSTLKNLSKLDLSINALTGPIPLGFQ---YLRGLFMLQLFQNSLSGTIPPKLGWY 408

Query:   297 SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIXXXXXXXXXX-XXITQVHLSKNM 355
             S L+ + M+ NHL G IP   C  + + IL+L  NN+             + Q+ L++N 
Sbjct:   409 SDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNN 468

Query:   356 LYGPLRY-GTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC 414
             L G  R+      + ++  ++L  N F G IP  +   + L+ L LA+N   GE+P ++ 
Sbjct:   469 LVG--RFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIG 526

Query:   415 RLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKE 474
              L QL  +++S+N + G++P  + N  +    D         N N   T  +   ++ + 
Sbjct:   527 MLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDM------CCN-NFSGTLPSEVGSLYQL 579

Query:   475 ESIMFTTKEISFSYK---GKPLNKMYGVDLSCNKLTGEIPPQISKLTRIR-ALNLSHNNL 530
             E +  +   +S +     G  L+++  + +  N   G IP ++  LT ++ ALNLS+N L
Sbjct:   580 ELLKLSNNNLSGTIPVALGN-LSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKL 638

Query:   531 TGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFT 590
             TG IP   SNL  +E L ++ NNL+G+IP     L++L  ++ ++N+L+G IP       
Sbjct:   639 TGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP----LLR 694

Query:   591 TFKEDSYEGNPLLCGKPLPDCDVAAVPEASNEEDGNSLIDMGSFYITFTSSYV----IVI 646
                  S+ GN  LCG PL  C +   P A ++  G       S  I  T++ +    +++
Sbjct:   695 NISMSSFIGNEGLCGPPLNQC-IQTQPFAPSQSTGKPGGMRSSKIIAITAAVIGGVSLML 753

Query:   647 LAIIGVLYVNP 657
             +A+I  L   P
Sbjct:   754 IALIVYLMRRP 764

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181059 hypothetical protein (781 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	699
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-63
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-54
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-44
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-32
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  227 bits (579), Expect = 3e-63
 Identities = 195/624 (31%), Positives = 300/624 (48%), Gaps = 83/624 (13%)

Query: 3   SLRVLSLDLN--QLTGNISSSPLIHLTSIERLFLSYNQ--FQIPFSLEPFFNNSKLKVFS 58
           S RV+S+DL+   ++G ISS+ +  L  I+ + LS NQ    IP                
Sbjct: 68  SSRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIP---------------- 110

Query: 59  GECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPK-FLYNQHDLEYVDFSDSNLKGE 117
              ++IF  S S         L  + LS +    + P+  + N   LE +D S++ L GE
Sbjct: 111 ---DDIFTTSSS---------LRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNMLSGE 155

Query: 118 FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
             N  + + ++L  L L  N L G     +     L+ L ++ N   G IP E+G     
Sbjct: 156 IPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKS 213

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
           L ++ L  N+ +G IP  IG + SL  LDL +N LTG IP  L  +  NL++L L +N L
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKL 272

Query: 238 LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS 297
            G +      L+KL+SL L  N  +GEIP+ +    +LE L++  NN  G IP  L +L 
Sbjct: 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332

Query: 298 SLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPS--CSSHSSITQVHLSKNM 355
            L  + + SN   G IP    + N L +LDLS NN++G +P   CSS  ++ ++ L  N 
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNS 391

Query: 356 LYG--PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQL 413
           L G  P   G      S+  + L  NSFSG +P    +L  + +L ++NNNL+G +  + 
Sbjct: 392 LEGEIPKSLGAC---RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 414 CRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEK 473
             +  L+++ L+ N  FG +P    ++      +N D     F+  V     + S  M+ 
Sbjct: 449 WDMPSLQMLSLARNKFFGGLP----DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ- 503

Query: 474 EESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGV 533
                                    + LS NKL+GEIP ++S   ++ +L+LSHN L+G 
Sbjct: 504 -------------------------LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538

Query: 534 IPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFK 593
           IP +FS +  +  LD+S N L+G+IP  L  + +L   +++HN+L G +P  T  F    
Sbjct: 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAIN 597

Query: 594 EDSYEGNPLLCG----KPLPDCDV 613
             +  GN  LCG      LP C  
Sbjct: 598 ASAVAGNIDLCGGDTTSGLPPCKR 621

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  200 bits (509), Expect = 6e-54
 Identities = 154/486 (31%), Positives = 230/486 (47%), Gaps = 75/486 (15%)

Query: 110 SDSNLKGEFLNW---LLENNTNLNTLVLRNNSLSGP-----FRMPIQPHWHLDTLYVSKN 161
           S+ N   +   W      N++ + ++ L   ++SG      FR+P     ++ T+ +S N
Sbjct: 49  SNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLP-----YIQTINLSNN 103

Query: 162 FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLA 221
              G IP +I      L YLNLS N+F GSIP   G + +LE LDLS+N L+GEIP  + 
Sbjct: 104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIG 161

Query: 222 MSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMS 281
            S  +L+ L L  N L+G++ +    L  L  L L +N   G+IP+ L     L+ +Y+ 
Sbjct: 162 -SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220

Query: 282 DNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS 341
            NNL G IP  +G L+SL  + +  N+L GPIP     L  LQ L L +N +SG +P   
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-- 278

Query: 342 SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILA 401
                                 + F+   +++LDLS NS SG IP  + +L  L  L L 
Sbjct: 279 ----------------------SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316

Query: 402 NNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVR 461
           +NN  G++P+ L  L +L+++ L +N   G+IP    N   HNN    D           
Sbjct: 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK---NLGKHNNLTVLD----------- 362

Query: 462 STYSAGSSTMEKEESIMFT---TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLT 518
              S  + T E  E +  +    K I FS                N L GEIP  +    
Sbjct: 363 --LSTNNLTGEIPEGLCSSGNLFKLILFS----------------NSLEGEIPKSLGACR 404

Query: 519 RIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNL 578
            +R + L  N+ +G +P  F+ L  V  LDIS NNL G+I  +  ++ +L   S+A N  
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464

Query: 579 SGKIPE 584
            G +P+
Sbjct: 465 FGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  170 bits (433), Expect = 3e-44
 Identities = 150/452 (33%), Positives = 210/452 (46%), Gaps = 60/452 (13%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQF--QIPFSLEPF---------FN 50
           +SL+VL L  N L G I +S L +LTS+E L L+ NQ   QIP  L            +N
Sbjct: 164 SSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 51  NSKLKVFSGEC-NEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDF 109
           N      SGE   EI   +  +H       L    L+G       P  L N  +L+Y+  
Sbjct: 223 N-----LSGEIPYEIGGLTSLNH-----LDLVYNNLTGP-----IPSSLGNLKNLQYLFL 267

Query: 110 SDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPL 169
             + L G     +  +   L +L L +NSLSG     +    +L+ L++  N F G IP+
Sbjct: 268 YQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Query: 170 EIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF 229
            +    PRL  L L  N F+G IP ++G  N+L  LDLS N LTGEIPE L  S  NL  
Sbjct: 327 AL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFK 384

Query: 230 LVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNI 289
           L+L  NSL                         GEIPKSL  C  L  + + DN+  G +
Sbjct: 385 LILFSNSL------------------------EGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 290 PAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQV 349
           P+    L  +Y + +++N+LQG I      +  LQ+L L+ N   G LP       +  +
Sbjct: 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENL 480

Query: 350 HLSKNMLYG--PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEG 407
            LS+N   G  P + G+    S ++ L LS N  SG IP  +     L  L L++N L G
Sbjct: 481 DLSRNQFSGAVPRKLGSL---SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537

Query: 408 EVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDN 439
           ++P     +  L  +DLS N + G+IP  L N
Sbjct: 538 QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  132 bits (334), Expect = 6e-32
 Identities = 96/321 (29%), Positives = 145/321 (45%), Gaps = 62/321 (19%)

Query: 279 YMSDNNLYGNIPAWLG----NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS 334
           Y+S+ N   ++  W G    N S +  I ++  ++ G I     +L Y+Q ++LS N +S
Sbjct: 47  YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106

Query: 335 GSLPS--CSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERL 392
           G +P    ++ SS+  ++LS N   G +  G+  N   + TLDLS N  SG IP  I   
Sbjct: 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNMLSGEIPNDIGSF 163

Query: 393 TYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSL 452
           + L+ L L  N L G++P  L  L  L  + L++N + GQIP                  
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP------------------ 205

Query: 453 VPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP 512
                               +E   M + K I   Y               N L+GEIP 
Sbjct: 206 --------------------RELGQMKSLKWIYLGY---------------NNLSGEIPY 230

Query: 513 QISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFS 572
           +I  LT +  L+L +NNLTG IP +  NL  ++ L +  N L+G IPP +  L  L    
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290

Query: 573 VAHNNLSGKIPEWTAQFTTFK 593
           ++ N+LSG+IPE   Q    +
Sbjct: 291 LSDNSLSGEIPELVIQLQNLE 311

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 83.7 bits (207), Expect = 1e-16
 Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 8/119 (6%)

Query: 498 GVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGK 557
           G+ L    L G IP  ISKL  ++++NLS N++ G IP +  ++  +E LD+SYN+ NG 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 558 IPPQLVELNALAFFSVAHNNLSGKIPEWTA----QFTTFKEDSYEGNPLLCGKP-LPDC 611
           IP  L +L +L   ++  N+LSG++P           +F   ++  N  LCG P L  C
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF---NFTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 6e-12
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 132 LVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS 191
           L L N  L G     I    HL ++ +S N  +GNIP  +G     L  L+LS N FNGS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGS 481

Query: 192 IPSSIGDMNSLEALDLSHNQLTGEIPEHL 220
           IP S+G + SL  L+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 8e-12
 Identities = 33/86 (38%), Positives = 52/86 (60%)

Query: 254 LHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPI 313
           L LD     G IP  +S   HL+ + +S N++ GNIP  LG+++SL  + ++ N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 314 PLEFCQLNYLQILDLSENNISGSLPS 339
           P    QL  L+IL+L+ N++SG +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 5e-11
 Identities = 42/120 (35%), Positives = 56/120 (46%), Gaps = 26/120 (21%)

Query: 150 HWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSH 209
            W +D L +     +G IP +I      L  +NLS N   G+IP S+G + SLE LDLS+
Sbjct: 417 KWFIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475

Query: 210 NQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSL 269
           N   G IPE                   LGQL S    LR    L+L+ N  +G +P +L
Sbjct: 476 NSFNGSIPES------------------LGQLTS----LRI---LNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 6e-11
 Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 25/128 (19%)

Query: 309 LQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNR 368
           L+G IP +  +L +LQ ++LS N+I G++P                         +  + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SLGSI 465

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQL-CRLKQLRLIDLSNN 427
           +S+  LDLSYNSF+G IP  + +LT LR L L  N+L G VP  L  RL      + ++N
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Query: 428 NIFGQIPG 435
                IPG
Sbjct: 526 AGLCGIPG 533

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 32/85 (37%), Positives = 46/85 (54%)

Query: 230 LVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNI 289
           L L    L G + +  + LR L S++L  N   G IP SL + + LE L +S N+  G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 290 PAWLGNLSSLYDIMMASNHLQGPIP 314
           P  LG L+SL  + +  N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 499 VDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554
           +DLS N+LT  IP      L  ++ L+LS NNLT + P  FS L  + SLD+S NNL
Sbjct: 5   LDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 6e-06
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 374 LDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQI 433
           L L      G+IP  I +L +L+ + L+ N++ G +P  L  +  L ++DLS N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 434 PGCLDN-TSLHNNGDNDDSL---VPA 455
           P  L   TSL     N +SL   VPA
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 519 RIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNL 578
            +++L+LS+N LT +    F  L  ++ LD+S NNL    P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 25/71 (35%), Positives = 42/71 (59%)

Query: 373 TLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQ 432
           +++LS NS  G IP  +  +T L  L L+ N+  G +P  L +L  LR+++L+ N++ G+
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 433 IPGCLDNTSLH 443
           +P  L    LH
Sbjct: 506 VPAALGGRLLH 516

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 9e-05
 Identities = 21/57 (36%), Positives = 28/57 (49%)

Query: 373 TLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
           +LDLS N  +       + L  L+ L L+ NNL    P     L  LR +DLS NN+
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 59/303 (19%), Positives = 85/303 (28%), Gaps = 82/303 (27%)

Query: 79  QLESVALSG---SGIHATF-PKFLYNQHDLEYVDFSDSNLKGEFLNWL-----LENNTNL 129
            L+ + L G       A      L  Q  L+ +  S +               L     L
Sbjct: 24  CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL 83

Query: 130 NTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFN 189
             L L +N+L      P         L   ++     + L                   N
Sbjct: 84  QELDLSDNALG-----PDGCGVLESLL---RSSSLQELKLN------------------N 117

Query: 190 GSIPSSIGDM---------NSLEALDLSHNQLTGEIPEHLA---MSCFNLEFLVLSENSL 237
             +      +          +LE L L  N+L G   E LA    +  +L+ L L+ N +
Sbjct: 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177

Query: 238 LGQLFS------KKNYLRKLVSLHLDANYFT-------GEIPKSLSNCSHLEGLYMSDNN 284
                       K N    L  L L+ N  T        E   SL +   L    + DNN
Sbjct: 178 GDAGIRALAEGLKAN--CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN---LGDNN 232

Query: 285 LYGNI-----PAWLGNLSSLYDIMMASNH--------LQGPIPLEFCQLNYLQILDLSEN 331
           L          A L    SL  + ++ N         L   +  E   L     LDL  N
Sbjct: 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA-EKESLLE---LDLRGN 288

Query: 332 NIS 334
              
Sbjct: 289 KFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQ 211
           +L +L +S N     IP       P L  L+LS N+     P +   + SL +LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 212 L 212
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS 236
            L  L+LS N        +   + +L+ LDLS N LT  I         +L  L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 237 L 237
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 55/242 (22%), Positives = 80/242 (33%), Gaps = 53/242 (21%)

Query: 215 EIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKS------ 268
            +P+ L +    LE   L E +    L S       L  L L  N  TG IP+       
Sbjct: 18  LLPKLLCLQVLRLEGNTLGEEAAK-ALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQ 75

Query: 269 -LSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILD 327
            L+    L+ L +SDN L                         G +     + + LQ L 
Sbjct: 76  GLTKGCGLQELDLSDNAL--------------------GPDGCGVLES-LLRSSSLQELK 114

Query: 328 LSENNISG--------SLPSCSSHSSITQVHLSKNMLYG----PLRYGTFFNRSSIVTLD 375
           L+ N +           L        + ++ L +N L G     L          +  L+
Sbjct: 115 LNNNGLGDRGLRLLAKGLKDLPPA--LEKLVLGRNRLEGASCEALA-KALRANRDLKELN 171

Query: 376 LSYNSFSGY-IPYWIERL---TYLRYLILANNNLEGEVPIQLC----RLKQLRLIDLSNN 427
           L+ N      I    E L     L  L L NN L  E    L      LK L +++L +N
Sbjct: 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231

Query: 428 NI 429
           N+
Sbjct: 232 NL 233

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 7/242 (2%)

Query: 189 NGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYL 248
           N + P S  +  ++  L L+ +  T  +         +L+ L  S  S L    +  N L
Sbjct: 34  NLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLL 93

Query: 249 RKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNH 308
             L SL L+ N     I + L   ++L  L + +NN+  +IP  +G L S    +  S++
Sbjct: 94  -PLPSLDLNLNRLRSNISELLEL-TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDN 150

Query: 309 LQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNR 368
               +P     L  L+ LDLS N++S      S+ S++  + LS N     L        
Sbjct: 151 KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLP-PEIELL 208

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
           S++  LDLS NS    +   +  L  L  L L+NN LE ++P  +  L  L  +DLSNN 
Sbjct: 209 SALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ 266

Query: 429 IF 430
           I 
Sbjct: 267 IS 268

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	699
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
PLN03150	623	hypothetical protein; Provisional	99.53
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
PLN03150	623	hypothetical protein; Provisional	99.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.88
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.79
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.55
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.49
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.44
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.37
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.2
KOG4341	483	consensus F-box protein containing LRR [General fu	98.08
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.07
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.02
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.94
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.92
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.86
KOG4341	483	consensus F-box protein containing LRR [General fu	97.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.76
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.72
PRK15386	426	type III secretion protein GogB; Provisional	97.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.64
PRK15386	426	type III secretion protein GogB; Provisional	97.44
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.07
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.87
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.83
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.76
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.65
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.11
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.82
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.46
KOG4308	478	consensus LRR-containing protein [Function unknown	93.44
KOG4308	478	consensus LRR-containing protein [Function unknown	92.78
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.64
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.6
smart00370	26	LRR Leucine-rich repeats, outliers.	91.84
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.84
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.78
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	91.33
smart00370	26	LRR Leucine-rich repeats, outliers.	90.64
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.64
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.54
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.43
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.4

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.2e-63  Score=584.95  Aligned_cols=542  Identities=32%  Similarity=0.472  Sum_probs=500.6

Q ss_pred             CCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCcccc
Q 040184            2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLE   81 (699)
Q Consensus         2 ~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~   81 (699)
                      .+++.|+|++|.++|.++. +|..+++|++|+|++|.+++.+|...+..+++|++|++++|.+.+..+.    ..+++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~l~~L~  143 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR----GSIPNLE  143 (968)
T ss_pred             CcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc----cccCCCC
Confidence            3578999999999988877 8999999999999999999889977777999999999999998764432    2345899


Q ss_pred             EEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCc
Q 040184           82 SVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKN  161 (699)
Q Consensus        82 ~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n  161 (699)
                      +|++++|.+++..|..+.++++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus       144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN  222 (968)
T ss_pred             EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence            99999999999999999999999999999999988888875 89999999999999999999999999999999999999


Q ss_pred             cCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccC
Q 040184          162 FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQL  241 (699)
Q Consensus       162 ~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  241 (699)
                      ++++.+|..+.. +++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+..
T Consensus       223 ~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~  300 (968)
T PLN00113        223 NLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEI  300 (968)
T ss_pred             ccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCC
Confidence            999889988876 78999999999999999999999999999999999999988888775 6999999999999999999


Q ss_pred             cccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCC
Q 040184          242 FSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLN  321 (699)
Q Consensus       242 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  321 (699)
                      |..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..++.++
T Consensus       301 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~  380 (968)
T PLN00113        301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG  380 (968)
T ss_pred             ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEcccccCcccCCCCC-CCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEc
Q 040184          322 YLQILDLSENNISGSLPSCS-SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLIL  400 (699)
Q Consensus       322 ~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  400 (699)
                      +|+.|++++|.+.+..|..+ .+++|+.|++++|.+.+..+.. +..++.|+.|++++|.+++..+..+..+++|+.|++
T Consensus       381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  459 (968)
T PLN00113        381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL  459 (968)
T ss_pred             CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence            99999999999998887765 7899999999999998877766 899999999999999999999999999999999999


Q ss_pred             ccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEe
Q 040184          401 ANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFT  480 (699)
Q Consensus       401 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (699)
                      ++|++.+..|..+ ..++|+.|++++|++++..|..+..                                         
T Consensus       460 ~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~-----------------------------------------  497 (968)
T PLN00113        460 ARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS-----------------------------------------  497 (968)
T ss_pred             cCceeeeecCccc-ccccceEEECcCCccCCccChhhhh-----------------------------------------
Confidence            9999998888765 4589999999999999888876654                                         


Q ss_pred             ecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCc
Q 040184          481 TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPP  560 (699)
Q Consensus       481 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  560 (699)
                                  +++|+.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|||++|++++.+|.
T Consensus       498 ------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        498 ------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             ------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence                        34899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCC
Q 040184          561 QLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKP  607 (699)
Q Consensus       561 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  607 (699)
                      .+..+++|+.+++++|++++.+|.. .++.++...++.|||.+|+.+
T Consensus       566 ~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        566 NLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             hHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence            9999999999999999999999975 467788888999999999754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.3e-58  Score=542.45  Aligned_cols=520  Identities=30%  Similarity=0.457  Sum_probs=477.5

Q ss_pred             CCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCCCCC
Q 040184           26 LTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLE  105 (699)
Q Consensus        26 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~~L~  105 (699)
                      ..+++.|+|++|.+++.++ ..|..+++|+.|++++|++.+..+... +..+.+|++|++++|++++.+|.  ..+++|+
T Consensus        68 ~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~-~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~  143 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDI-FTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE  143 (968)
T ss_pred             CCcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHH-hccCCCCCEEECcCCccccccCc--cccCCCC
Confidence            4589999999999997765 569999999999999999875433321 23556899999999999888775  4689999


Q ss_pred             EEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcC
Q 040184          106 YVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSR  185 (699)
Q Consensus       106 ~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~  185 (699)
                      +|++++|.+.+.+|..+ .++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++
T Consensus       144 ~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~  221 (968)
T PLN00113        144 TLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGY  221 (968)
T ss_pred             EEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcC
Confidence            99999999998888875 89999999999999999999999999999999999999999888988876 78999999999


Q ss_pred             CcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccC
Q 040184          186 NDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEI  265 (699)
Q Consensus       186 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~  265 (699)
                      |.+.+.+|..++++++|++|++++|.+++.+|..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..
T Consensus       222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  300 (968)
T PLN00113        222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI  300 (968)
T ss_pred             CccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence            99999999999999999999999999998888776 47999999999999999889999999999999999999999999


Q ss_pred             CccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCC-CCC
Q 040184          266 PKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS-SHS  344 (699)
Q Consensus       266 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~  344 (699)
                      |..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+ ...
T Consensus       301 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~  380 (968)
T PLN00113        301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG  380 (968)
T ss_pred             ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998777665 678


Q ss_pred             CccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEEC
Q 040184          345 SITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDL  424 (699)
Q Consensus       345 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  424 (699)
                      +|+.+++++|.+.+..+.. +..+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus       381 ~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  459 (968)
T PLN00113        381 NLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL  459 (968)
T ss_pred             CCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence            9999999999998887766 889999999999999999999999999999999999999999999988899999999999


Q ss_pred             cCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCC
Q 040184          425 SNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCN  504 (699)
Q Consensus       425 s~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  504 (699)
                      ++|++.+.+|..+.                                                      .++|+.|++++|
T Consensus       460 ~~n~~~~~~p~~~~------------------------------------------------------~~~L~~L~ls~n  485 (968)
T PLN00113        460 ARNKFFGGLPDSFG------------------------------------------------------SKRLENLDLSRN  485 (968)
T ss_pred             cCceeeeecCcccc------------------------------------------------------cccceEEECcCC
Confidence            99999887775432                                                      247999999999


Q ss_pred             ccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCC
Q 040184          505 KLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPE  584 (699)
Q Consensus       505 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~  584 (699)
                      ++++..|..+..+++|++|+|++|.+++.+|..+..+++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|.
T Consensus       486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCCCccCCCCCCCCCC
Q 040184          585 WTAQFTTFKEDSYEGNPLLCGKP  607 (699)
Q Consensus       585 ~~~~~~~l~~~~~~~Np~~C~~~  607 (699)
                      .+..++.++.+++++|++.+..|
T Consensus       566 ~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        566 NLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             hHhcCcccCEEeccCCcceeeCC
Confidence            99889999999999999987544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.8e-43  Score=347.47  Aligned_cols=381  Identities=23%  Similarity=0.273  Sum_probs=271.7

Q ss_pred             CcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEcc
Q 040184          178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLD  257 (699)
Q Consensus       178 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  257 (699)
                      -++|++++|.+..+.+..|.++++|+++++..|.++ .||.... ...+|+.|+|.+|.|.....+.+..++.|+.|||+
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            344555555555444445555555555555555554 4544331 23345555555555544444444455555555555


Q ss_pred             CCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCccc-
Q 040184          258 ANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGS-  336 (699)
Q Consensus       258 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-  336 (699)
                      .|.|+.+....|..-.++++|+|++|.|+......|.++.+|..|.+++|+++...+..|..+++|+.|++..|+|... 
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            5555544444444445555555555555555555555555555555555555555555555555555555555555422 


Q ss_pred             CCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCC
Q 040184          337 LPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL  416 (699)
Q Consensus       337 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  416 (699)
                      .-.+.++++|+.+.+..|++. .+..++|..+.++++|+|+.|++...-.+|+.++++|+.|+++.|.|..+.++.+..+
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            112225555566666666553 3445568899999999999999998888899999999999999999998888888899


Q ss_pred             CCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcc
Q 040184          417 KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKM  496 (699)
Q Consensus       417 ~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  496 (699)
                      ++|+.|++++|+++...++.|..                                                     +..|
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~-----------------------------------------------------L~~L  343 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRV-----------------------------------------------------LSQL  343 (873)
T ss_pred             ccceeEeccccccccCChhHHHH-----------------------------------------------------HHHh
Confidence            99999999999998766665544                                                     3489


Q ss_pred             cEEEccCCccCccCCccccccCccCeEEccCCcCcccCC---ccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184          497 YGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP---VTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV  573 (699)
Q Consensus       497 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  573 (699)
                      ++|+|++|++...-...|..+++|++|||++|.++..+.   ..|..+++|+.|++.+|+|..+....|..+++|+.|||
T Consensus       344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL  423 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL  423 (873)
T ss_pred             hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence            999999999998888889999999999999999987655   35788999999999999999777789999999999999


Q ss_pred             ccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184          574 AHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS  620 (699)
Q Consensus       574 ~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~  620 (699)
                      .+|.+....|..|.++ .|+++-+..-.++|     +|+..|++.|.
T Consensus       424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC-----DCql~Wl~qWl  464 (873)
T KOG4194|consen  424 GDNAIASIQPNAFEPM-ELKELVMNSSSFLC-----DCQLKWLAQWL  464 (873)
T ss_pred             CCCcceeecccccccc-hhhhhhhcccceEE-----eccHHHHHHHH
Confidence            9999999999999888 89999888889999     99999988885

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-40  Score=332.58  Aligned_cols=388  Identities=22%  Similarity=0.209  Sum_probs=324.5

Q ss_pred             cEEeCCCCCCCCCCCcccccCC--CCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccE
Q 040184            5 RVLSLDLNQLTGNISSSPLIHL--TSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLES   82 (699)
Q Consensus         5 ~~L~ls~n~l~~~i~~~~~~~l--~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~   82 (699)
                      +.||.+++.+. .++...+..+  +.-+.||+|+|+++ .+....|.++++|+.+.+..|.++.++...   ....+|+.
T Consensus        55 ~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~---~~sghl~~  129 (873)
T KOG4194|consen   55 RLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFG---HESGHLEK  129 (873)
T ss_pred             eeeecCccccc-cccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhccccc---ccccceeE
Confidence            46788888876 5544344432  34566999999998 777788999999999999999987664432   22237999


Q ss_pred             EEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCcc
Q 040184           83 VALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNF  162 (699)
Q Consensus        83 L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~  162 (699)
                      |+|.+|.|+.+-.+.+..++.|++||||.|.++ ++|...|..-.++++|+|++|+|+....+.|..+.+|.+|.|++|+
T Consensus       130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr  208 (873)
T KOG4194|consen  130 LDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR  208 (873)
T ss_pred             EeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence            999999999998899999999999999999998 7887777777899999999999999999999999999999999999


Q ss_pred             CCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCc
Q 040184          163 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLF  242 (699)
Q Consensus       163 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  242 (699)
                      ++ .+|...|+.+++|+.|+|..|+|.-..-..|.++++|+.|.+..|.+. .+..+.|..+.++++|+|+.|++...-.
T Consensus       209 it-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~  286 (873)
T KOG4194|consen  209 IT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNE  286 (873)
T ss_pred             cc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhc
Confidence            98 899999998999999999999998555678999999999999999998 8888888899999999999999988777


Q ss_pred             ccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCC
Q 040184          243 SKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNY  322 (699)
Q Consensus       243 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  322 (699)
                      .++-++..|+.|+++.|.|..+-+++...+++|+.|+|++|+++...+..|..+..|++|.++.|.+.......|..+.+
T Consensus       287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss  366 (873)
T KOG4194|consen  287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS  366 (873)
T ss_pred             ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh
Confidence            88889999999999999999888899999999999999999999888889999999999999999998777788899999


Q ss_pred             CcEEEcccccCcccCCCC---C-CCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEE
Q 040184          323 LQILDLSENNISGSLPSC---S-SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYL  398 (699)
Q Consensus       323 L~~L~l~~n~i~~~~~~~---~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  398 (699)
                      |++||++.|.+...+...   + ++++|++|.+.+|++. .++..+|.+++.|++|||.+|.|..+-+.+|..+ .|++|
T Consensus       367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~L  444 (873)
T KOG4194|consen  367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKEL  444 (873)
T ss_pred             hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hhhhh
Confidence            999999999987544322   1 5666666666666663 3444446666666666666666666666666666 66666


Q ss_pred             Eccc
Q 040184          399 ILAN  402 (699)
Q Consensus       399 ~L~~  402 (699)
                      .+..
T Consensus       445 v~nS  448 (873)
T KOG4194|consen  445 VMNS  448 (873)
T ss_pred             hhcc
Confidence            5543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.4e-40  Score=317.98  Aligned_cols=476  Identities=25%  Similarity=0.339  Sum_probs=265.6

Q ss_pred             CCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCCCCCE
Q 040184           27 TSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEY  106 (699)
Q Consensus        27 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~~L~~  106 (699)
                      ..|..|.+++|.+. .+. +.+.++..|.+|++.+|.....++..   .....++.++.+.|+++ .+|+.+....+++.
T Consensus        45 v~l~~lils~N~l~-~l~-~dl~nL~~l~vl~~~~n~l~~lp~ai---g~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~  118 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE-VLR-EDLKNLACLTVLNVHDNKLSQLPAAI---GELEALKSLNVSHNKLS-ELPEQIGSLISLVK  118 (565)
T ss_pred             cchhhhhhccCchh-hcc-HhhhcccceeEEEeccchhhhCCHHH---HHHHHHHHhhcccchHh-hccHHHhhhhhhhh
Confidence            45566666666654 222 33555666666666666554433222   12224555555655553 34555555556666


Q ss_pred             EEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCC
Q 040184          107 VDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRN  186 (699)
Q Consensus       107 L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n  186 (699)
                      ++.++|.+. ++++.+ ..+..|+.++..+|++.. .|..+..+.++..+++.+|+++ ..|+...+ ++.|++||...|
T Consensus       119 l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N  193 (565)
T KOG0472|consen  119 LDCSSNELK-ELPDSI-GRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSN  193 (565)
T ss_pred             hhcccccee-ecCchH-HHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchh
Confidence            666666555 444443 455555666655555553 3445555555666666666655 34444433 455666666555


Q ss_pred             cccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCC
Q 040184          187 DFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIP  266 (699)
Q Consensus       187 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  266 (699)
                      -++ .+|..++.+.+|+.|++..|++. .+|+  |.+|..|+++.++.|.+.-...+....++.+..||+..|+++ ..|
T Consensus       194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~P  268 (565)
T KOG0472|consen  194 LLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVP  268 (565)
T ss_pred             hhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCc
Confidence            554 45555566666666666666665 5552  234556666666666554332233335556666666666665 455


Q ss_pred             ccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCC--CCcEEE-------ccccc-----
Q 040184          267 KSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLN--YLQILD-------LSENN-----  332 (699)
Q Consensus       267 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~-------l~~n~-----  332 (699)
                      +.+..+.+|+.||+++|.++ ..|..++++ .|+.|.+.+|.+..+-.+.+..=+  -|++|.       ++...     
T Consensus       269 de~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~  346 (565)
T KOG0472|consen  269 DEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET  346 (565)
T ss_pred             hHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence            55555556666666666655 345555555 566666666554321111100000  000000       00000     


Q ss_pred             ----CcccCCCCCCCCCccEEEccCccccccCCcccccCC--CCccEEECCCCCCCCCcChhhhcCCCCCE-EEcccCcC
Q 040184          333 ----ISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNR--SSIVTLDLSYNSFSGYIPYWIERLTYLRY-LILANNNL  405 (699)
Q Consensus       333 ----i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~-L~L~~n~l  405 (699)
                          ..+..|......+.+.|++++-+++ ..|...|..-  .-...++++.|++. .+|..+..+..+.+ +.+++|++
T Consensus       347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i  424 (565)
T KOG0472|consen  347 AMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI  424 (565)
T ss_pred             cCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence                0011112223445666666666653 3444434322  23566777777776 45555555554433 44444444


Q ss_pred             CCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeeccee
Q 040184          406 EGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS  485 (699)
Q Consensus       406 ~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (699)
                      . .+|..++.+++|..|++++|.+- .+|..++.+                                             
T Consensus       425 s-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l---------------------------------------------  457 (565)
T KOG0472|consen  425 S-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL---------------------------------------------  457 (565)
T ss_pred             c-cchHHHHhhhcceeeecccchhh-hcchhhhhh---------------------------------------------
Confidence            4 66777777777778888777764 445444332                                             


Q ss_pred             eeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccC
Q 040184          486 FSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVEL  565 (699)
Q Consensus       486 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  565 (699)
                              ..|+.||+|.|++. ..|..+..+..|+.+-.++|++....|+.+.++.+|.+|||.+|.+. .+|..++++
T Consensus       458 --------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm  527 (565)
T KOG0472|consen  458 --------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM  527 (565)
T ss_pred             --------hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence                    25777888888777 66777777777777777777777677776777888888888888887 677777888


Q ss_pred             CCCCeeecccCcCc
Q 040184          566 NALAFFSVAHNNLS  579 (699)
Q Consensus       566 ~~L~~L~l~~N~l~  579 (699)
                      ++|++|.++||++.
T Consensus       528 tnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  528 TNLRHLELDGNPFR  541 (565)
T ss_pred             cceeEEEecCCccC
Confidence            88888888888776

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.8e-40  Score=314.92  Aligned_cols=495  Identities=23%  Similarity=0.295  Sum_probs=376.6

Q ss_pred             CCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccE
Q 040184            3 SLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLES   82 (699)
Q Consensus         3 ~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~   82 (699)
                      .++.|.++.|++. .+.+ .+.++..|++|++++|+.. +.| .+++.+..++.++.++|++...+...   ....+++.
T Consensus        46 ~l~~lils~N~l~-~l~~-dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls~lp~~i---~s~~~l~~  118 (565)
T KOG0472|consen   46 DLQKLILSHNDLE-VLRE-DLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLSELPEQI---GSLISLVK  118 (565)
T ss_pred             chhhhhhccCchh-hccH-hhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHhhccHHH---hhhhhhhh
Confidence            3667889999998 5544 4889999999999999987 666 45888899999999999887654433   33447899


Q ss_pred             EEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCcc
Q 040184           83 VALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNF  162 (699)
Q Consensus        83 L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~  162 (699)
                      ++.+.|.+. ..++.++.+..++.++-.+|++. ..|..+ ..+.+|..+++.+|++....+..+. ++.|++||...|-
T Consensus       119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~  194 (565)
T KOG0472|consen  119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL  194 (565)
T ss_pred             hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhh
Confidence            999999885 55667888999999999999998 677775 6888999999999998875555444 8899999999998


Q ss_pred             CCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCc
Q 040184          163 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLF  242 (699)
Q Consensus       163 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  242 (699)
                      +. .+|.+++. +.+|.-|+|.+|.|. ..| .|.+|..|++|+++.|.+. .+|++....++++..||+..|++. ..|
T Consensus       195 L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~P  268 (565)
T KOG0472|consen  195 LE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVP  268 (565)
T ss_pred             hh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCc
Confidence            86 88998887 778999999999998 566 7899999999999999998 899999888999999999999986 668


Q ss_pred             ccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccC--CCcEEe-------ccCCcc----
Q 040184          243 SKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS--SLYDIM-------MASNHL----  309 (699)
Q Consensus       243 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~-------l~~n~~----  309 (699)
                      +.+..+++|..||+++|.|+ ..|..++++ .|+.|.+.+|.+...-.+.+..-+  -|++|.       ++...-    
T Consensus       269 de~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~  346 (565)
T KOG0472|consen  269 DEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET  346 (565)
T ss_pred             hHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence            88888999999999999999 678889998 899999999987532111111100  011110       111100    


Q ss_pred             ccc-CCc---cccCCCCCcEEEcccccCcccCCCCCC---CCCccEEEccCccccccCCcccccCCCCcc-EEECCCCCC
Q 040184          310 QGP-IPL---EFCQLNYLQILDLSENNISGSLPSCSS---HSSITQVHLSKNMLYGPLRYGTFFNRSSIV-TLDLSYNSF  381 (699)
Q Consensus       310 ~~~-~~~---~~~~l~~L~~L~l~~n~i~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~-~L~Ls~n~i  381 (699)
                      ... .+.   ....+.+.++|++++-+++......+.   -.-+...++++|++. .+|.. +..+..+. .+.+++|.+
T Consensus       347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~-L~~lkelvT~l~lsnn~i  424 (565)
T KOG0472|consen  347 AMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKR-LVELKELVTDLVLSNNKI  424 (565)
T ss_pred             cCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhh-hHHHHHHHHHHHhhcCcc
Confidence            000 111   123455788899988888855544443   234788999999984 45554 44444443 456666555


Q ss_pred             CCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccccccc
Q 040184          382 SGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVR  461 (699)
Q Consensus       382 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (699)
                       +.+|..++.+++|+.|++++|-+. .+|..+..+..|+.|+++.|+|. ..|.++...                     
T Consensus       425 -sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~l---------------------  480 (565)
T KOG0472|consen  425 -SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYEL---------------------  480 (565)
T ss_pred             -ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhH---------------------
Confidence             478899999999999999999887 78888889999999999999885 666655432                     


Q ss_pred             ccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCC
Q 040184          462 STYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNL  541 (699)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  541 (699)
                                                      ..++.+-.++|++....|..+.++.+|.+|||.+|.+. .+|..++++
T Consensus       481 --------------------------------q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm  527 (565)
T KOG0472|consen  481 --------------------------------QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM  527 (565)
T ss_pred             --------------------------------HHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence                                            36677777889999777777999999999999999999 778899999


Q ss_pred             CCCCEEeCCCCcccccCCcccccCCCCCeeecccC
Q 040184          542 NQVESLDISYNNLNGKIPPQLVELNALAFFSVAHN  576 (699)
Q Consensus       542 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  576 (699)
                      ++|++|++++|.+. ..+..+--......+..-++
T Consensus       528 tnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrd  561 (565)
T KOG0472|consen  528 TNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRD  561 (565)
T ss_pred             cceeEEEecCCccC-CCHHHHhccChHHHHHHhcc
Confidence            99999999999998 55544433334444443333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-36  Score=315.58  Aligned_cols=497  Identities=25%  Similarity=0.265  Sum_probs=326.0

Q ss_pred             EeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEcc
Q 040184            7 LSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALS   86 (699)
Q Consensus         7 L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls   86 (699)
                      +|.|.+++. .||. .+..-..+.+|+++.|-+. +.|.+...+.-+|+.||+++|.+...+...   ....+|+.|+++
T Consensus         3 vd~s~~~l~-~ip~-~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~i---t~l~~L~~ln~s   76 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPE-QILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQI---TLLSHLRQLNLS   76 (1081)
T ss_pred             cccccccCc-ccch-hhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchh---hhHHHHhhcccc
Confidence            567777776 6666 3444445788888887765 455555666666778888777665432211   222367777887


Q ss_pred             CCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCcc
Q 040184           87 GSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGN  166 (699)
Q Consensus        87 ~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~  166 (699)
                      .|.|. ..|....++.+|+++.|.+|.+. ..|..+ ..+.+|++|++++|.+.. .|..+..++.+..+..++|.-.. 
T Consensus        77 ~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~-  151 (1081)
T KOG0618|consen   77 RNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQ-  151 (1081)
T ss_pred             hhhHh-hCchhhhhhhcchhheeccchhh-cCchhH-HhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhh-
Confidence            77774 34566677777888888777776 667664 677778888888777753 56666667777777777772111 


Q ss_pred             CchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCccccc
Q 040184          167 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKN  246 (699)
Q Consensus       167 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  246 (699)
                         .+++  ..++.+++..|.+.+.++..+..+.+  .|++++|.+. .+..   ..+.+|+.+....|.+.....    
T Consensus       152 ---~lg~--~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dl---s~~~~l~~l~c~rn~ls~l~~----  216 (1081)
T KOG0618|consen  152 ---RLGQ--TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDL---SNLANLEVLHCERNQLSELEI----  216 (1081)
T ss_pred             ---hhcc--ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhh---hhccchhhhhhhhcccceEEe----
Confidence               1222  13666677777766666666666555  6777777765 3222   246677777777776643221    


Q ss_pred             CCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEE
Q 040184          247 YLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQIL  326 (699)
Q Consensus       247 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  326 (699)
                      ..++++.|+.++|.++...+..  -..+|++++++.|+++ ..|+++..+.+|+.+....|.+. ..|..+...++|+.|
T Consensus       217 ~g~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l  292 (1081)
T KOG0618|consen  217 SGPSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSL  292 (1081)
T ss_pred             cCcchheeeeccCcceeecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHH
Confidence            2467777777777777333322  2246777888887777 45577777888888888887775 566667777778888


Q ss_pred             EcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCC-CccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcC
Q 040184          327 DLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRS-SIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL  405 (699)
Q Consensus       327 ~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  405 (699)
                      ++..|.+....+......+|+.|++..|++.. .|...+.... ++..++.+.|.+.......-..++.|+.|++.+|.+
T Consensus       293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L  371 (1081)
T KOG0618|consen  293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL  371 (1081)
T ss_pred             HhhhhhhhhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence            88877777555555567777888887777743 3333243333 366777777776644332333456688888888888


Q ss_pred             CCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeeccee
Q 040184          406 EGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS  485 (699)
Q Consensus       406 ~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (699)
                      +...-..+.+.+.|+.|+|++|++......++.+                                              
T Consensus       372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k----------------------------------------------  405 (1081)
T KOG0618|consen  372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK----------------------------------------------  405 (1081)
T ss_pred             cccchhhhccccceeeeeecccccccCCHHHHhc----------------------------------------------
Confidence            8766667778888888888888875332223322                                              


Q ss_pred             eeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccC-Cccccc
Q 040184          486 FSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI-PPQLVE  564 (699)
Q Consensus       486 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~  564 (699)
                             ++.|++|+||+|+++ .+|..+..++.|++|...+|.+. ..| .+..+++|+.+|+|.|+++... |.... 
T Consensus       406 -------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-  474 (1081)
T KOG0618|consen  406 -------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-  474 (1081)
T ss_pred             -------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-
Confidence                   347888888888888 56788888888888888888888 555 7788888888888888887433 33322 


Q ss_pred             CCCCCeeecccCcCcccCCCCCcCCCC
Q 040184          565 LNALAFFSVAHNNLSGKIPEWTAQFTT  591 (699)
Q Consensus       565 l~~L~~L~l~~N~l~~~~~~~~~~~~~  591 (699)
                      -+.|++||+++|.-.......+..+..
T Consensus       475 ~p~LkyLdlSGN~~l~~d~~~l~~l~~  501 (1081)
T KOG0618|consen  475 SPNLKYLDLSGNTRLVFDHKTLKVLKS  501 (1081)
T ss_pred             CcccceeeccCCcccccchhhhHHhhh
Confidence            278888888888743333333333333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=9.4e-35  Score=305.69  Aligned_cols=486  Identities=23%  Similarity=0.282  Sum_probs=381.3

Q ss_pred             CcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEE
Q 040184            4 LRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESV   83 (699)
Q Consensus         4 L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L   83 (699)
                      ++.|+++.|-+- ..|-.+..++-+|+.||+|+|++. +.|. .+..+++|+.|.++.|.+...+   .....+.+|+++
T Consensus        23 ~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~~vp---~s~~~~~~l~~l   96 (1081)
T KOG0618|consen   23 LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIRSVP---SSCSNMRNLQYL   96 (1081)
T ss_pred             HHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHhhCc---hhhhhhhcchhh
Confidence            567888888876 555545677778999999999997 6773 5788999999999999886654   222455589999


Q ss_pred             EccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccC
Q 040184           84 ALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFF  163 (699)
Q Consensus        84 ~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i  163 (699)
                      .|.+|.+ ...|..+..+++|+.|++++|.+. .+|..+ ..++.++.+..++|.....    ++.. .++.+++..|.+
T Consensus        97 nL~~n~l-~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~l  168 (1081)
T KOG0618|consen   97 NLKNNRL-QSLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKIQR----LGQT-SIKKLDLRLNVL  168 (1081)
T ss_pred             eeccchh-hcCchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcchhhhh----hccc-cchhhhhhhhhc
Confidence            9999887 467888999999999999999998 788776 7889999999999932221    2222 278888999988


Q ss_pred             CccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcc
Q 040184          164 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFS  243 (699)
Q Consensus       164 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  243 (699)
                      .+.++.++.. +.+  .|+|.+|.+.   -..+..++.|+.|....|++. .+.    ..-++++.|+.++|.+....+.
T Consensus       169 ~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~  237 (1081)
T KOG0618|consen  169 GGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVH  237 (1081)
T ss_pred             ccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeeccc
Confidence            8888877764 333  6999999986   245678889999999999887 443    2467899999999998733322


Q ss_pred             cccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCC
Q 040184          244 KKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYL  323 (699)
Q Consensus       244 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  323 (699)
                        ....+|+++++++|+++ ..|.++..+.+|+.+...+|.++ ..|..+...++|+.|.+..|.+. -+|....+++.|
T Consensus       238 --p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL  312 (1081)
T KOG0618|consen  238 --PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL  312 (1081)
T ss_pred             --cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee
Confidence              23578999999999999 56799999999999999999996 67888888899999999999998 567777889999


Q ss_pred             cEEEcccccCcccCCCCC--CCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcc
Q 040184          324 QILDLSENNISGSLPSCS--SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILA  401 (699)
Q Consensus       324 ~~L~l~~n~i~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  401 (699)
                      ++|++..|.+....+..+  ...++..++.+.|++......+ =...+.|+.|.+.+|.+++..-..+.++++|+.|+|+
T Consensus       313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~-e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs  391 (1081)
T KOG0618|consen  313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE-ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS  391 (1081)
T ss_pred             eeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc-chhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence            999999999985444333  2334677777777774433222 2346679999999999998877788899999999999


Q ss_pred             cCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEee
Q 040184          402 NNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTT  481 (699)
Q Consensus       402 ~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (699)
                      +|++.......+.+++.|+.|++|+|+++ .+|.++.++                                         
T Consensus       392 yNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~-----------------------------------------  429 (1081)
T KOG0618|consen  392 YNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANL-----------------------------------------  429 (1081)
T ss_pred             ccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh-----------------------------------------
Confidence            99998666667889999999999999997 555555543                                         


Q ss_pred             cceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcc
Q 040184          482 KEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQ  561 (699)
Q Consensus       482 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  561 (699)
                                  ..|++|...+|++. ..| .+..++.|+.+|+|.|.++...-..-..-++|++|||++|.=.......
T Consensus       430 ------------~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~  495 (1081)
T KOG0618|consen  430 ------------GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKT  495 (1081)
T ss_pred             ------------hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhh
Confidence                        47888999999998 566 7999999999999999997543322223389999999999844355566


Q ss_pred             cccCCCCCeeecccC
Q 040184          562 LVELNALAFFSVAHN  576 (699)
Q Consensus       562 l~~l~~L~~L~l~~N  576 (699)
                      |..+..+...++.-|
T Consensus       496 l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  496 LKVLKSLSQMDITLN  510 (1081)
T ss_pred             hHHhhhhhheecccC
Confidence            777777777777666

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5.8e-34  Score=286.46  Aligned_cols=317  Identities=26%  Similarity=0.349  Sum_probs=250.6

Q ss_pred             cccEEEccCCcCc-cccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEE
Q 040184           79 QLESVALSGSGIH-ATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLY  157 (699)
Q Consensus        79 ~L~~L~ls~~~i~-~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  157 (699)
                      -.+-+|+++|.++ +..|.....+++++-|.|...++. .+|+.+ +.+.+|++|.+++|++.. +...+..++.|+.++
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVI   84 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHh
Confidence            4667888888888 568888889999999999998887 888886 889999999999998875 356688889999999


Q ss_pred             ccCccCC-ccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCc
Q 040184          158 VSKNFFQ-GNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS  236 (699)
Q Consensus       158 l~~n~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  236 (699)
                      +..|++. .-+|.++|+ +..|..|||++|+++ ..|..+..-.++-+|+|++|+|. .||..+|.++..|-.||||+|.
T Consensus        85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence            9999886 348999998 789999999999998 78888888889999999999998 9999999899999999999998


Q ss_pred             CCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCc-CcCchhhhccCCCcEEeccCCcccccCCc
Q 040184          237 LLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY-GNIPAWLGNLSSLYDIMMASNHLQGPIPL  315 (699)
Q Consensus       237 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  315 (699)
                      +. .+|..+..+.+|++|+|++|.+....-..+..+++|+.|.+++.+-+ ..+|.++..+.+|..++++.|.+. ..|+
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe  239 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE  239 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence            85 56667788889999999998876444445666777788888876543 346667777777777777777776 6777


Q ss_pred             cccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCC
Q 040184          316 EFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYL  395 (699)
Q Consensus       316 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L  395 (699)
                      ++..+++|+.|++++|.|+..             +           .. .....+|++|++|.|+++ .+|+++..+++|
T Consensus       240 cly~l~~LrrLNLS~N~iteL-------------~-----------~~-~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL  293 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNKITEL-------------N-----------MT-EGEWENLETLNLSRNQLT-VLPDAVCKLTKL  293 (1255)
T ss_pred             HHhhhhhhheeccCcCceeee-------------e-----------cc-HHHHhhhhhhccccchhc-cchHHHhhhHHH
Confidence            777777777777777776621             1           11 334567888888888887 678888888888


Q ss_pred             CEEEcccCcCCC-CCCcccCCCCCCCEEECcCCcc
Q 040184          396 RYLILANNNLEG-EVPIQLCRLKQLRLIDLSNNNI  429 (699)
Q Consensus       396 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~i  429 (699)
                      +.|...+|+++- -+|..++.+.+|+.+..++|.+
T Consensus       294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L  328 (1255)
T KOG0444|consen  294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL  328 (1255)
T ss_pred             HHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence            888888888762 3566677777777666666665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.1e-33  Score=282.48  Aligned_cols=372  Identities=27%  Similarity=0.348  Sum_probs=268.3

Q ss_pred             CCCCCCEEEccCccCC-ccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCC
Q 040184          149 PHWHLDTLYVSKNFFQ-GNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNL  227 (699)
Q Consensus       149 ~l~~L~~L~l~~n~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  227 (699)
                      -++-.+-.|+++|.++ +..|.++.+ +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+ +.++.|
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~L   80 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRL   80 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhh
Confidence            3455677888888887 567777766 678888888888887 68888888888888888888887 555555 357888


Q ss_pred             cEEEccCCcCC-ccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccC
Q 040184          228 EFLVLSENSLL-GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMAS  306 (699)
Q Consensus       228 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  306 (699)
                      +.+++..|++. ..+|..+-.+..|+.|||++|++. ..|..+...+++-.|+||+|+|..+....|.+++.|-.|++++
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            88888888763 345566666777888888888777 5677777777777778887777755445566677777777777


Q ss_pred             CcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCC-CCc
Q 040184          307 NHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFS-GYI  385 (699)
Q Consensus       307 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~~~  385 (699)
                      |++. ..|..+..+..|++|++++|.+....                       .. .+..+++|++|.+++.+-+ ..+
T Consensus       160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ-----------------------Lr-QLPsmtsL~vLhms~TqRTl~N~  214 (1255)
T KOG0444|consen  160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ-----------------------LR-QLPSMTSLSVLHMSNTQRTLDNI  214 (1255)
T ss_pred             chhh-hcCHHHHHHhhhhhhhcCCChhhHHH-----------------------Hh-cCccchhhhhhhcccccchhhcC
Confidence            7776 44555566677777777777654210                       00 1334556666777665433 245


Q ss_pred             ChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccccccccccc
Q 040184          386 PYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYS  465 (699)
Q Consensus       386 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (699)
                      |..+..+.+|..++++.|.+. ..|+++-.+++|+.|++|+|+|+... .+.+.                          
T Consensus       215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~-~~~~~--------------------------  266 (1255)
T KOG0444|consen  215 PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELN-MTEGE--------------------------  266 (1255)
T ss_pred             CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeee-ccHHH--------------------------
Confidence            667777788888888888887 77788888888888888888876321 11111                          


Q ss_pred             CCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcc-cCCccccCCCCC
Q 040184          466 AGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTG-VIPVTFSNLNQV  544 (699)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L  544 (699)
                                                 -.+|++|++|.|+++ .+|.+++.++.|+.|++.+|+++- =+|..++++.+|
T Consensus       267 ---------------------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  267 ---------------------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL  318 (1255)
T ss_pred             ---------------------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence                                       136777888888887 678888888888888888888752 367788888888


Q ss_pred             CEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCC
Q 040184          545 ESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPL  608 (699)
Q Consensus       545 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  608 (699)
                      +++..++|.+. ..|+++..+..|+.|.|++|++. ..|+.+..++.+..+++..||-+-.+|-
T Consensus       319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence            88888888887 78888888888888888888876 4666666677888888888887775553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=2.3e-27  Score=227.41  Aligned_cols=275  Identities=20%  Similarity=0.180  Sum_probs=166.6

Q ss_pred             CCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccC-CcCCCccchHHhhcCCCCcEE
Q 040184          152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSH-NQLTGEIPEHLAMSCFNLEFL  230 (699)
Q Consensus       152 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L  230 (699)
                      .-.+++|..|+|+ .+|...|+.+++|+.|||++|.|+.+.|++|.++++|.+|-+.+ |+|+ .+|...|.++.+++.|
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            4556777788887 78888888888888888888888888888888888877776665 7887 8888888888888888


Q ss_pred             EccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCc------------CcCchhhhccCC
Q 040184          231 VLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY------------GNIPAWLGNLSS  298 (699)
Q Consensus       231 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~  298 (699)
                      .+.-|++.-...+.|..++++..|.+..|.+..+...+|..+..++.+.+..|.+-            ...|..++....
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            88888887777788888888888888888888554557888888888887777621            112222222222


Q ss_pred             CcEEeccCCcccccCCccccC-CCCCcEEEcccccCcccCCC-CC-CCCCccEEEccCccccccCCcccccCCCCccEEE
Q 040184          299 LYDIMMASNHLQGPIPLEFCQ-LNYLQILDLSENNISGSLPS-CS-SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLD  375 (699)
Q Consensus       299 L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~i~~~~~~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  375 (699)
                      .....+.+.++..+.+..|.. +..+..--.+.+......|. ++ .+++|++|++++|++++.-+ ++|.+...+++|.
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~-~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED-GAFEGAAELQELY  304 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh-hhhcchhhhhhhh
Confidence            222223333332222211111 01111001111111111111 11 44555555555555543222 2355556666666


Q ss_pred             CCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcc
Q 040184          376 LSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI  429 (699)
Q Consensus       376 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i  429 (699)
                      |..|++.......|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|++
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            666666555555556666666666666666655555666666666666655554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=4.4e-27  Score=225.49  Aligned_cols=302  Identities=21%  Similarity=0.165  Sum_probs=231.5

Q ss_pred             EEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccC-
Q 040184          156 LYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE-  234 (699)
Q Consensus       156 L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-  234 (699)
                      .+.++-.++ ++|..+.   +....++|..|+|+.+.+.+|+.+++|+.|||++|.|+ .|....|.++.++.+|.+.+ 
T Consensus        51 VdCr~~GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             EEccCCCcc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence            344455555 6787775   47889999999999999999999999999999999998 88888888999988877666 


Q ss_pred             CcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccc---
Q 040184          235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG---  311 (699)
Q Consensus       235 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~---  311 (699)
                      |+|+......|+++..++.|.+.-|++.-...++|..++++..|.+.+|.+.......|..+..++.+.+..|.+..   
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn  205 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN  205 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence            88988888899999999999999999998788899999999999999999885555588889999999999887431   


Q ss_pred             ---------cCCccccCCCCCcEEEcccccCcccCCCCCCCC--CccEEEccCccccccCCcccccCCCCccEEECCCCC
Q 040184          312 ---------PIPLEFCQLNYLQILDLSENNISGSLPSCSSHS--SITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNS  380 (699)
Q Consensus       312 ---------~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~  380 (699)
                               ..|..+++.....-..+.+.++....+..+.+.  ++..-..+.+......|...|..+++|++|++++|+
T Consensus       206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~  285 (498)
T KOG4237|consen  206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK  285 (498)
T ss_pred             cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence                     122233333333333344444443333333222  232222334445566777779999999999999999


Q ss_pred             CCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCC------ccCCCCCCCCCcc
Q 040184          381 FSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVP  454 (699)
Q Consensus       381 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~------~~~~~~~~~~~~~  454 (699)
                      ++++-+.+|.+...+++|.|..|++.......|.++..|+.|++.+|+|+...|..|..+.      +..++....+...
T Consensus       286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~  365 (498)
T KOG4237|consen  286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA  365 (498)
T ss_pred             cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence            9999999999999999999999999977788899999999999999999998888877653      3344444555444


Q ss_pred             cccccccc
Q 040184          455 AFNHNVRS  462 (699)
Q Consensus       455 ~~~~~~~~  462 (699)
                      ++...++.
T Consensus       366 wl~~Wlr~  373 (498)
T KOG4237|consen  366 WLGEWLRK  373 (498)
T ss_pred             HHHHHHhh
Confidence            44444333

>PLN03210 Resistant to P

Probab=99.91  E-value=4.9e-23  Score=243.38  Aligned_cols=309  Identities=22%  Similarity=0.250  Sum_probs=188.2

Q ss_pred             CCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEc
Q 040184          177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHL  256 (699)
Q Consensus       177 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  256 (699)
                      +|+.|++.++.+. .+|..| ...+|+.|++.+|.+. .++... ..+++|+.|+++++.....+|. +..+++|+.|++
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence            4555555555554 344444 3455555555555554 444443 2455555555555443333332 445555566666


Q ss_pred             cCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCccc
Q 040184          257 DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGS  336 (699)
Q Consensus       257 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~  336 (699)
                      ++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|......|..   .++|+.|++++|.+. .
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~  739 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-E  739 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-c
Confidence            5554444455555556666666666554333444333 4556666666665443333322   245666666666654 3


Q ss_pred             CCCCCCCCCccEEEccCccccc------cCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCC
Q 040184          337 LPSCSSHSSITQVHLSKNMLYG------PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVP  410 (699)
Q Consensus       337 ~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  410 (699)
                      +|....+++|+.|.+.++....      ......+..+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|
T Consensus       740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP  819 (1153)
T PLN03210        740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP  819 (1153)
T ss_pred             ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence            4444455566666555432110      0111113345688999999887777788888999999999999886544666


Q ss_pred             cccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCC
Q 040184          411 IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKG  490 (699)
Q Consensus       411 ~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (699)
                      ... .+++|+.|++++|.....+|.                                                       
T Consensus       820 ~~~-~L~sL~~L~Ls~c~~L~~~p~-------------------------------------------------------  843 (1153)
T PLN03210        820 TGI-NLESLESLDLSGCSRLRTFPD-------------------------------------------------------  843 (1153)
T ss_pred             CCC-CccccCEEECCCCCccccccc-------------------------------------------------------
Confidence            555 688899999988865433332                                                       


Q ss_pred             CCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCc
Q 040184          491 KPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNN  553 (699)
Q Consensus       491 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  553 (699)
                       ...+++.|+|++|.++ .+|..+..+++|+.|+|++|+-...+|..+..+++|+.+++++|.
T Consensus       844 -~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        844 -ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             -cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence             1247888999999988 678888899999999999855444577777888899999988884

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=1.9e-22  Score=238.44  Aligned_cols=341  Identities=20%  Similarity=0.229  Sum_probs=225.6

Q ss_pred             chhhhhcCCCCcEEeCcCCc------ccccCCccccCCC-CCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCcc
Q 040184          168 PLEIGVYFPRLVYLNLSRND------FNGSIPSSIGDMN-SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ  240 (699)
Q Consensus       168 ~~~~~~~~~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  240 (699)
                      ....+..+++|+.|.+..+.      +....|..+..++ +|+.|++.++.+. .+|..+  ...+|+.|++++|.+. .
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence            34445556777777775443      2223455555553 5777777777776 666654  3667777777777764 3


Q ss_pred             CcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCC
Q 040184          241 LFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQL  320 (699)
Q Consensus       241 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  320 (699)
                      ++..+..+++|+.|+++++.....+|. ++.+++|+.|++++|.....+|..+.++++|+.|++++|.....+|..+ ++
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            455566777777777776654334443 6677777777777776555677777777777777777765444555544 56


Q ss_pred             CCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCC-------CCcChhhhcCC
Q 040184          321 NYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFS-------GYIPYWIERLT  393 (699)
Q Consensus       321 ~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~-------~~~~~~~~~l~  393 (699)
                      ++|+.|++++|...+.+|..  ..+|+.|++++|.+. .+|..  ..+++|..|++.++...       ...+......+
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSN--LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-ccccc--ccccccccccccccchhhccccccccchhhhhccc
Confidence            77777777777654444432  356777777777763 33332  24566777766653321       11222233456


Q ss_pred             CCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccc
Q 040184          394 YLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEK  473 (699)
Q Consensus       394 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (699)
                      +|+.|++++|.....+|..+..+++|+.|++++|...+.+|...                                    
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------  822 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------  822 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence            78888888887666777778888888888888776544444322                                    


Q ss_pred             cceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCc
Q 040184          474 EESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNN  553 (699)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  553 (699)
                                        .+++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|..+..+++|+.|++++|+
T Consensus       823 ------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        823 ------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             ------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence                              1457888899887655444443   367888999999888 567788888999999998854


Q ss_pred             ccccCCcccccCCCCCeeecccCc
Q 040184          554 LNGKIPPQLVELNALAFFSVAHNN  577 (699)
Q Consensus       554 l~~~~p~~l~~l~~L~~L~l~~N~  577 (699)
                      -...+|..+..+++|+.+++++|.
T Consensus       881 ~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        881 NLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CcCccCcccccccCCCeeecCCCc
Confidence            333577777888888888888885

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.5e-20  Score=204.21  Aligned_cols=263  Identities=21%  Similarity=0.201  Sum_probs=160.9

Q ss_pred             CcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEE
Q 040184            4 LRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESV   83 (699)
Q Consensus         4 L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L   83 (699)
                      -..|+++.+.++ .+|+ .+.  ++|+.|++++|+++ .+|.    .+++|++|++++|.++..+..      ..+|++|
T Consensus       203 ~~~LdLs~~~Lt-sLP~-~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l------p~sL~~L  267 (788)
T PRK15387        203 NAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL------PPGLLEL  267 (788)
T ss_pred             CcEEEcCCCCCC-cCCc-chh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc------cccccee
Confidence            457888888888 7887 443  47888899888887 5653    257788888888877654311      1267788


Q ss_pred             EccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccC
Q 040184           84 ALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFF  163 (699)
Q Consensus        84 ~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i  163 (699)
                      ++++|.++.. |..   .++|+.|++++|.++ .+|.    ..++|+.|++++|.+.+. |..   ..+|+.|++++|++
T Consensus       268 ~Ls~N~L~~L-p~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L  334 (788)
T PRK15387        268 SIFSNPLTHL-PAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQL  334 (788)
T ss_pred             eccCCchhhh-hhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCccccC-CCC---cccccccccccCcc
Confidence            8888777543 322   246777778887776 5553    236777777777777653 221   23566677777777


Q ss_pred             CccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcc
Q 040184          164 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFS  243 (699)
Q Consensus       164 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  243 (699)
                      + .+|.    ..++|++|+|++|+++. +|..   .++|+.|++++|.++ .+|..    ..+|+.|++++|.+.+ +|.
T Consensus       335 ~-~LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~  399 (788)
T PRK15387        335 T-SLPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPV  399 (788)
T ss_pred             c-cccc----cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCcccC-CCC
Confidence            6 4553    12367777777777763 4432   245666777777776 55532    2456666666666653 232


Q ss_pred             cccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccc
Q 040184          244 KKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEF  317 (699)
Q Consensus       244 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  317 (699)
                      .   .++|+.|++++|.++. +|..   ..+|+.|++++|+++ .+|..+.++++|+.|++++|.+.+..+..+
T Consensus       400 l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        400 L---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             c---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            2   2456666666666653 3432   234555666666665 455555666666666666666655444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=3.4e-20  Score=203.14  Aligned_cols=112  Identities=28%  Similarity=0.396  Sum_probs=52.3

Q ss_pred             CEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCC
Q 040184          203 EALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSD  282 (699)
Q Consensus       203 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  282 (699)
                      ..|+++++.++ .+|..+.   ++|+.|++++|+++. +|.   .+++|++|++++|+++. +|..   .++|+.|++++
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS  271 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence            34555555554 4444332   244555555554442 222   13455555555555552 2321   23555555555


Q ss_pred             CcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCc
Q 040184          283 NNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS  334 (699)
Q Consensus       283 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~  334 (699)
                      |.+.. +|..+   ++|+.|++++|++.. +|.   ..++|+.|++++|++.
T Consensus       272 N~L~~-Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        272 NPLTH-LPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA  315 (788)
T ss_pred             Cchhh-hhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCccc
Confidence            55542 22211   345555555555552 232   1245666666666555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=2.6e-18  Score=189.87  Aligned_cols=245  Identities=23%  Similarity=0.319  Sum_probs=115.2

Q ss_pred             CcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEE
Q 040184            4 LRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESV   83 (699)
Q Consensus         4 L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L   83 (699)
                      ...|++++++++ .+|. .+  .++|+.|+|++|.++ .+|...   .++|+.|++++|.+...                
T Consensus       180 ~~~L~L~~~~Lt-sLP~-~I--p~~L~~L~Ls~N~Lt-sLP~~l---~~nL~~L~Ls~N~LtsL----------------  235 (754)
T PRK15370        180 KTELRLKILGLT-TIPA-CI--PEQITTLILDNNELK-SLPENL---QGNIKTLYANSNQLTSI----------------  235 (754)
T ss_pred             ceEEEeCCCCcC-cCCc-cc--ccCCcEEEecCCCCC-cCChhh---ccCCCEEECCCCccccC----------------
Confidence            445666666555 4544 22  235666666666655 344321   13455555555544322                


Q ss_pred             EccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccC
Q 040184           84 ALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFF  163 (699)
Q Consensus        84 ~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i  163 (699)
                                 |..+.  ++|+.|++++|.+. .+|..+.   ++|+.|++++|++.. +|..+.  ++|+.|++++|++
T Consensus       236 -----------P~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~L  295 (754)
T PRK15370        236 -----------PATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSI  295 (754)
T ss_pred             -----------Chhhh--ccccEEECcCCccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcc
Confidence                       22221  23445555555444 4444331   345555555554442 232221  2455555555555


Q ss_pred             CccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcc
Q 040184          164 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFS  243 (699)
Q Consensus       164 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  243 (699)
                      + .+|..+.   +.|+.|++++|.++. +|..+  .++|+.|++++|.++ .+|..+   .++|+.|++++|++.. +|.
T Consensus       296 t-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~~-LP~  363 (754)
T PRK15370        296 R-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQITV-LPE  363 (754)
T ss_pred             c-cCcccch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCCc-CCh
Confidence            4 3443322   245555555555542 33322  135555555555555 455433   2455555555555542 333


Q ss_pred             cccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchh----hhccCCCcEEeccCCccc
Q 040184          244 KKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAW----LGNLSSLYDIMMASNHLQ  310 (699)
Q Consensus       244 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~~  310 (699)
                      .+  .++|++|++++|.++ .+|..+.  ..|+.|++++|++. .+|..    +..++.+..+++.+|.+.
T Consensus       364 ~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        364 TL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            22  245666666666655 2333332  24566666666655 23332    223355666666666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=3.5e-18  Score=188.81  Aligned_cols=13  Identities=38%  Similarity=0.493  Sum_probs=5.8

Q ss_pred             CCCEEEccCCcCC
Q 040184          201 SLEALDLSHNQLT  213 (699)
Q Consensus       201 ~L~~L~L~~n~l~  213 (699)
                      +|+.|++++|.++
T Consensus       221 nL~~L~Ls~N~Lt  233 (754)
T PRK15370        221 NIKTLYANSNQLT  233 (754)
T ss_pred             CCCEEECCCCccc
Confidence            4444444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=3.1e-19  Score=183.98  Aligned_cols=59  Identities=27%  Similarity=0.170  Sum_probs=29.2

Q ss_pred             EEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCcc----CcccccCCCCCcEEEccCCcCC
Q 040184          204 ALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ----LFSKKNYLRKLVSLHLDANYFT  262 (699)
Q Consensus       204 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~  262 (699)
                      .|+|..+.+++.-....+..+..|+.++++++.+...    ++..+...+++++++++++.+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~   64 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG   64 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence            3555566555333333334455666666666665321    2233334445555555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=3.9e-18  Score=175.76  Aligned_cols=276  Identities=22%  Similarity=0.220  Sum_probs=132.0

Q ss_pred             EEeCCCCCCCC-CCCcccccCCCCCCEEeCCCCccccc----CCcccccCCCCCcEEEcccCcccccccc----ccCCCC
Q 040184            6 VLSLDLNQLTG-NISSSPLIHLTSIERLFLSYNQFQIP----FSLEPFFNNSKLKVFSGECNEIFVESES----SHSMTP   76 (699)
Q Consensus         6 ~L~ls~n~l~~-~i~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~~   76 (699)
                      .|+|.++.+++ .... .|..++.|++|+++++.++..    ++ ..+...++|+.++++++.+......    ...+..
T Consensus         2 ~l~L~~~~l~~~~~~~-~~~~l~~L~~l~l~~~~l~~~~~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~   79 (319)
T cd00116           2 QLSLKGELLKTERATE-LLPKLLCLQVLRLEGNTLGEEAAKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK   79 (319)
T ss_pred             ccccccCcccccchHH-HHHHHhhccEEeecCCCCcHHHHHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence            46788888874 3443 566778888888888887531    11 2344566777777777655420000    001112


Q ss_pred             CccccEEEccCCcCccccchhcCCCCC---CCEEEcccCccccccchhh---hhCC-CCCCEEEcCCCcCccc----CCC
Q 040184           77 KFQLESVALSGSGIHATFPKFLYNQHD---LEYVDFSDSNLKGEFLNWL---LENN-TNLNTLVLRNNSLSGP----FRM  145 (699)
Q Consensus        77 ~~~L~~L~ls~~~i~~~~~~~l~~~~~---L~~L~ls~n~~~~~~~~~~---~~~l-~~L~~L~Ls~n~i~~~----~~~  145 (699)
                      +.+|++|++++|.+....+..+..+.+   |+.|++++|.+.+.....+   +..+ ++|+.|++++|.+++.    ...
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            335555555555554333333333222   5555555555442111110   1233 4445555555544421    111


Q ss_pred             CCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccc----cCCccccCCCCCCEEEccCCcCCCccchH--
Q 040184          146 PIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG----SIPSSIGDMNSLEALDLSHNQLTGEIPEH--  219 (699)
Q Consensus       146 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--  219 (699)
                      .+..++                         +|++|++++|.+++    .++..+..+++|+.|++++|.+++.....  
T Consensus       160 ~~~~~~-------------------------~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  214 (319)
T cd00116         160 ALRANR-------------------------DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA  214 (319)
T ss_pred             HHHhCC-------------------------CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence            223333                         45555555555442    11222333445555555555544221111  


Q ss_pred             -HhhcCCCCcEEEccCCcCCccCcccc-----cCCCCCcEEEccCCcCCc----cCCccCcCCCCCceEECCCCcCcCc-
Q 040184          220 -LAMSCFNLEFLVLSENSLLGQLFSKK-----NYLRKLVSLHLDANYFTG----EIPKSLSNCSHLEGLYMSDNNLYGN-  288 (699)
Q Consensus       220 -~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~-  288 (699)
                       .+..+++|++|++++|.+.+.....+     ...+.|++|++++|.++.    .+...+..+++|+.+++++|.+... 
T Consensus       215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~  294 (319)
T cd00116         215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG  294 (319)
T ss_pred             HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence             11234455555555555443111111     123566666666666641    1223445556777777777777643 


Q ss_pred             ---Cchhhhcc-CCCcEEeccCCc
Q 040184          289 ---IPAWLGNL-SSLYDIMMASNH  308 (699)
Q Consensus       289 ---~~~~~~~l-~~L~~L~l~~n~  308 (699)
                         ....+... +.|+.+++.+|.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         295 AQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHHHhhcCCchhhcccCCCC
Confidence               22223333 566777766654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=1.6e-18  Score=147.77  Aligned_cols=185  Identities=27%  Similarity=0.371  Sum_probs=133.6

Q ss_pred             CCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCC
Q 040184          337 LPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL  416 (699)
Q Consensus       337 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  416 (699)
                      ++..+.+..++.|.+++|+++.. +.. ++.+.+|+.|++++|+|+ ..|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~~v-ppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~  101 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLTVV-PPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF  101 (264)
T ss_pred             cccccchhhhhhhhcccCceeec-CCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence            34445556666666777766433 333 667777888888888877 46667788888888888888876 677788888


Q ss_pred             CCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcc
Q 040184          417 KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKM  496 (699)
Q Consensus       417 ~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  496 (699)
                      |.|+.||+++|.+..                                                                 
T Consensus       102 p~levldltynnl~e-----------------------------------------------------------------  116 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNE-----------------------------------------------------------------  116 (264)
T ss_pred             chhhhhhcccccccc-----------------------------------------------------------------
Confidence            888888887777642                                                                 


Q ss_pred             cEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccC
Q 040184          497 YGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHN  576 (699)
Q Consensus       497 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  576 (699)
                                 ...|..|-.++.|+.|+|++|.+. .+|..++++++|+.|.+..|.+. .+|..+..++.|++|.+.+|
T Consensus       117 -----------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  117 -----------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             -----------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence                       135666667778888888888887 67777888888888888888887 77888888888888888888


Q ss_pred             cCcccCCCCCcCCC---CCCCCccCCCCCCC
Q 040184          577 NLSGKIPEWTAQFT---TFKEDSYEGNPLLC  604 (699)
Q Consensus       577 ~l~~~~~~~~~~~~---~l~~~~~~~Np~~C  604 (699)
                      +++...|+ ++.+.   .-+....+.|||.-
T Consensus       184 rl~vlppe-l~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  184 RLTVLPPE-LANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             eeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence            88876665 33332   22345567777765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=1.1e-16  Score=136.64  Aligned_cols=155  Identities=30%  Similarity=0.478  Sum_probs=72.7

Q ss_pred             CCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEE
Q 040184          126 NTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEAL  205 (699)
Q Consensus       126 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  205 (699)
                      ++..+.|.||+|+++. .|..+..+.+|+.|++++|++. .+|.++.+ +++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3444444445544443 2333444444444444444444 34444443 344444444444443 344444444444444


Q ss_pred             EccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcC
Q 040184          206 DLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL  285 (699)
Q Consensus       206 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  285 (699)
                      |+.+|.+..                        ...|..|-.+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+
T Consensus       108 dltynnl~e------------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  108 DLTYNNLNE------------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             hcccccccc------------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            444444331                        123444444445555555555554 4444555555555555555554


Q ss_pred             cCcCchhhhccCCCcEEeccCCccc
Q 040184          286 YGNIPAWLGNLSSLYDIMMASNHLQ  310 (699)
Q Consensus       286 ~~~~~~~~~~l~~L~~L~l~~n~~~  310 (699)
                      - ..|..++.++.|++|.+.+|+++
T Consensus       163 l-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  163 L-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             h-hCcHHHHHHHHHHHHhcccceee
Confidence            4 34455555555555555555554

>PLN03150 hypothetical protein; Provisional

Probab=99.53  E-value=2.8e-14  Score=157.67  Aligned_cols=118  Identities=35%  Similarity=0.587  Sum_probs=107.2

Q ss_pred             cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecc
Q 040184          495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA  574 (699)
Q Consensus       495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  574 (699)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcCcccCCCCCcCC-CCCCCCccCCCCCCCCCCC-CCCC
Q 040184          575 HNNLSGKIPEWTAQF-TTFKEDSYEGNPLLCGKPL-PDCD  612 (699)
Q Consensus       575 ~N~l~~~~~~~~~~~-~~l~~~~~~~Np~~C~~~~-~~c~  612 (699)
                      +|++++.+|..+... ..+..+++.+|+.+|+.|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999876543 4556788999999998653 3464

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.5e-12  Score=128.17  Aligned_cols=188  Identities=17%  Similarity=0.094  Sum_probs=116.6

Q ss_pred             CCCCCCEEeCCCCcccccCCc-ccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchh-cCCCC
Q 040184           25 HLTSIERLFLSYNQFQIPFSL-EPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKF-LYNQH  102 (699)
Q Consensus        25 ~l~~L~~L~Ls~n~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~-l~~~~  102 (699)
                      ++++|+++.|.++.+. ..+. +....|++++.|||+.|-++...........+++|+.|+++.|.+....... -..++
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            5677788888777765 2221 3455677888888887766554433333345557888888877764322211 12567


Q ss_pred             CCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEe
Q 040184          103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN  182 (699)
Q Consensus       103 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~  182 (699)
                      +|++|.+++|.++..-..++...+|+|+.|.|..|............+..|++|||++|++...-.......+|.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            88888888888886666666678888888888888644444445556677888888887765322112222367777777


Q ss_pred             CcCCcccccC-Ccc-----ccCCCCCCEEEccCCcCC
Q 040184          183 LSRNDFNGSI-PSS-----IGDMNSLEALDLSHNQLT  213 (699)
Q Consensus       183 L~~n~i~~~~-~~~-----~~~l~~L~~L~L~~n~l~  213 (699)
                      ++.+++..+. |+.     ...+++|++|++..|++.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            7777776431 221     133455666666666554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=5.3e-13  Score=135.27  Aligned_cols=175  Identities=28%  Similarity=0.407  Sum_probs=121.5

Q ss_pred             CCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEE
Q 040184          343 HSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLI  422 (699)
Q Consensus       343 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  422 (699)
                      +..-...+++.|++. .++.. +..+..|+.+.+..|.+. .+|..+..+..|++++|+.|++. ..|..++.++ |+.|
T Consensus        74 ltdt~~aDlsrNR~~-elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             ccchhhhhccccccc-cCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            344445566667663 34443 556666777777777776 56677777777777777777776 5666666665 7777


Q ss_pred             ECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEcc
Q 040184          423 DLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLS  502 (699)
Q Consensus       423 ~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  502 (699)
                      .+++|+++ .+|..++.                                                     ...|..||.+
T Consensus       149 i~sNNkl~-~lp~~ig~-----------------------------------------------------~~tl~~ld~s  174 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGL-----------------------------------------------------LPTLAHLDVS  174 (722)
T ss_pred             EEecCccc-cCCccccc-----------------------------------------------------chhHHHhhhh
Confidence            77777775 44443331                                                     2467778888


Q ss_pred             CCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcc
Q 040184          503 CNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG  580 (699)
Q Consensus       503 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  580 (699)
                      .|.+. .+|..++.+.+|+.|++..|++. -.|..+..|+ |..||+|+|+++ .+|-.|.+|..|++|-|.+|+|..
T Consensus       175 ~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  175 KNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            88877 56777888888888888888887 3445555554 777888888887 777788888888888888888763

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=5.3e-12  Score=118.03  Aligned_cols=87  Identities=26%  Similarity=0.329  Sum_probs=62.9

Q ss_pred             CCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccC-CcccccCCCCCee
Q 040184          493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI-PPQLVELNALAFF  571 (699)
Q Consensus       493 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L  571 (699)
                      +++|+.||||+|.++ .+.++-..+.+.++|.|++|.+.+.  ..++++-+|..||+++|+|.... -..+.++|-|+.+
T Consensus       328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            346666666666665 3444455677888888888888744  56778888888899988887422 2467888889999


Q ss_pred             ecccCcCcccC
Q 040184          572 SVAHNNLSGKI  582 (699)
Q Consensus       572 ~l~~N~l~~~~  582 (699)
                      .+.+|++.+..
T Consensus       405 ~L~~NPl~~~v  415 (490)
T KOG1259|consen  405 RLTGNPLAGSV  415 (490)
T ss_pred             hhcCCCccccc
Confidence            99999887643

>PLN03150 hypothetical protein; Provisional

Probab=99.17  E-value=8.5e-11  Score=130.20  Aligned_cols=114  Identities=29%  Similarity=0.493  Sum_probs=101.0

Q ss_pred             CCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCccc
Q 040184          418 QLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMY  497 (699)
Q Consensus       418 ~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  497 (699)
                      .++.|+|++|.+.+.+|..+..                                                     +++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~-----------------------------------------------------L~~L~  445 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISK-----------------------------------------------------LRHLQ  445 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhC-----------------------------------------------------CCCCC
Confidence            3778999999999888876654                                                     35899


Q ss_pred             EEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccC-CCCCeeecccC
Q 040184          498 GVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVEL-NALAFFSVAHN  576 (699)
Q Consensus       498 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N  576 (699)
                      .|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+|++|++++.+|..+... ..+..+++.+|
T Consensus       446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999988764 46788999999


Q ss_pred             cCcccCCC
Q 040184          577 NLSGKIPE  584 (699)
Q Consensus       577 ~l~~~~~~  584 (699)
                      +..|..|.
T Consensus       526 ~~lc~~p~  533 (623)
T PLN03150        526 AGLCGIPG  533 (623)
T ss_pred             ccccCCCC
Confidence            87665543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.17  E-value=1.5e-12  Score=132.13  Aligned_cols=195  Identities=26%  Similarity=0.420  Sum_probs=137.6

Q ss_pred             CCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEE
Q 040184          319 QLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYL  398 (699)
Q Consensus       319 ~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  398 (699)
                      .+..-...|++.|++......+-.+..|+.+.+..|.+. .++.. ...+..|+.++++.|++. ..|..+..++ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~-i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEA-ICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchh-hhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            445556778888888744333346677777778777773 34433 677788888888888887 4566666554 8888


Q ss_pred             EcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeE
Q 040184          399 ILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIM  478 (699)
Q Consensus       399 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (699)
                      .+++|+++ .+|+.++..+.|..||.+.|.+.. +|..+..                                       
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~---------------------------------------  187 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGY---------------------------------------  187 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhh---------------------------------------
Confidence            88888887 677777788888888888888753 3333332                                       


Q ss_pred             EeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 040184          479 FTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI  558 (699)
Q Consensus       479 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  558 (699)
                                    +.+|+.|++..|.+.. .|+.+..|+ |..||+|.|+++ .+|-.|.+|+.|++|-|.+|.+. ..
T Consensus       188 --------------l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SP  249 (722)
T KOG0532|consen  188 --------------LTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SP  249 (722)
T ss_pred             --------------HHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CC
Confidence                          3477778888888874 556666554 788888888888 67888888888888888888887 56


Q ss_pred             Cccccc---CCCCCeeecccC
Q 040184          559 PPQLVE---LNALAFFSVAHN  576 (699)
Q Consensus       559 p~~l~~---l~~L~~L~l~~N  576 (699)
                      |..+..   ..-.++|+..-+
T Consensus       250 PAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  250 PAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hHHHHhccceeeeeeecchhc
Confidence            655542   334566666666

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1e-11  Score=122.40  Aligned_cols=163  Identities=22%  Similarity=0.201  Sum_probs=78.5

Q ss_pred             hCCCCCCEEEcCCCcCcccCC-CCCCCCCCCCEEEccCccCCccC-chhhhhcCCCCcEEeCcCCcccccCCcc-ccCCC
Q 040184          124 ENNTNLNTLVLRNNSLSGPFR-MPIQPHWHLDTLYVSKNFFQGNI-PLEIGVYFPRLVYLNLSRNDFNGSIPSS-IGDMN  200 (699)
Q Consensus       124 ~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l~  200 (699)
                      .++.+|+...|.++.+..... .....|++++.|||++|-+..-. -..+...+|+|+.|+|+.|++....... -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            345566666666665543221 23455666666666666554211 1234444666666666666654211111 11345


Q ss_pred             CCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccC-CccCcCCCCCceEE
Q 040184          201 SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEI-PKSLSNCSHLEGLY  279 (699)
Q Consensus       201 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~  279 (699)
                      +|+.|.++.|.++..--......+|+|+.|++..|............+..|++|||++|.+.... -...+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            56666666665553222223334566666666655322222222333455555555555544211 02234445555555


Q ss_pred             CCCCcCc
Q 040184          280 MSDNNLY  286 (699)
Q Consensus       280 l~~n~l~  286 (699)
                      ++.+.+.
T Consensus       278 ls~tgi~  284 (505)
T KOG3207|consen  278 LSSTGIA  284 (505)
T ss_pred             ccccCcc
Confidence            5555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.10  E-value=1.8e-11  Score=117.35  Aligned_cols=112  Identities=27%  Similarity=0.248  Sum_probs=58.9

Q ss_pred             cCCCCcEEEccCCcCCc----cCcccccCCCCCcEEEccCCcCCcc----CCccCcCCCCCceEECCCCcCcCcCchhh-
Q 040184          223 SCFNLEFLVLSENSLLG----QLFSKKNYLRKLVSLHLDANYFTGE----IPKSLSNCSHLEGLYMSDNNLYGNIPAWL-  293 (699)
Q Consensus       223 ~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-  293 (699)
                      ..+.|+.+.++.|.|..    .....+..++.|+.|||..|.++..    +..+++.+++|+.|++++|.+.......| 
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            34445555555444421    1223445556666666666655421    23445556666666666666654433322 


Q ss_pred             ----hccCCCcEEeccCCccccc----CCccccCCCCCcEEEcccccCc
Q 040184          294 ----GNLSSLYDIMMASNHLQGP----IPLEFCQLNYLQILDLSENNIS  334 (699)
Q Consensus       294 ----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~i~  334 (699)
                          ...++|+.|.+.+|.++..    +..+....+.|..|++++|++.
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence                1245667777777665532    1122334667777777777763

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=2.1e-11  Score=116.92  Aligned_cols=118  Identities=25%  Similarity=0.254  Sum_probs=65.9

Q ss_pred             hhcCCCCCCCEEEcccCccccccch---hhhhCCCCCCEEEcCCCcCcccCC-------------CCCCCCCCCCEEEcc
Q 040184           96 KFLYNQHDLEYVDFSDSNLKGEFLN---WLLENNTNLNTLVLRNNSLSGPFR-------------MPIQPHWHLDTLYVS  159 (699)
Q Consensus        96 ~~l~~~~~L~~L~ls~n~~~~~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~-------------~~~~~l~~L~~L~l~  159 (699)
                      .++..+++|++|+||.|.+....+.   .++..+..|++|.|.+|.+.-..-             .....-+.|+++..+
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            3455677888888888877644433   234667788888888876642111             112233456666666


Q ss_pred             CccCCccC---chhhhhcCCCCcEEeCcCCcccc----cCCccccCCCCCCEEEccCCcCC
Q 040184          160 KNFFQGNI---PLEIGVYFPRLVYLNLSRNDFNG----SIPSSIGDMNSLEALDLSHNQLT  213 (699)
Q Consensus       160 ~n~i~~~~---~~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~  213 (699)
                      +|++...-   -+..++..+.|+.+.++.|.|..    .....+..+++|++|||.+|.++
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            66654211   12233444566666666666542    12234555666666666666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=1.4e-10  Score=104.69  Aligned_cols=109  Identities=28%  Similarity=0.334  Sum_probs=31.1

Q ss_pred             CCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCc
Q 040184          149 PHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLE  228 (699)
Q Consensus       149 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  228 (699)
                      +..++++|+|++|.|+ .+ ..+...+.+|+.|++++|.|+..  +.+..++.|++|++++|.++ .+++.+...+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            3445566666666654 22 23333345677777777777643  24566777777777777776 55544433466777


Q ss_pred             EEEccCCcCCcc-CcccccCCCCCcEEEccCCcCC
Q 040184          229 FLVLSENSLLGQ-LFSKKNYLRKLVSLHLDANYFT  262 (699)
Q Consensus       229 ~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~  262 (699)
                      +|++++|.+... ....+..+++|+.|++.+|.+.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            777777766431 1133344555555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=3.3e-10  Score=120.10  Aligned_cols=176  Identities=35%  Similarity=0.496  Sum_probs=82.6

Q ss_pred             CCCCEEEccCccCCccCchhhhhcCC-CCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcE
Q 040184          151 WHLDTLYVSKNFFQGNIPLEIGVYFP-RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF  229 (699)
Q Consensus       151 ~~L~~L~l~~n~i~~~~~~~~~~~~~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  229 (699)
                      +.++.|++.+|.++ .++..... .. +|+.|++++|.+. .+|..++.++.|+.|++++|++. .+|.... ..++|+.
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~  190 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNN  190 (394)
T ss_pred             cceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhh
Confidence            44444444444444 33333322 21 4555555555554 23334445555555555555554 4444331 2445555


Q ss_pred             EEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcc
Q 040184          230 LVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHL  309 (699)
Q Consensus       230 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  309 (699)
                      |++++|.+. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+..++.+++++.|++++|.+
T Consensus       191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             eeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccccc
Confidence            555555543 22222223334555555555322 233445555555555555555442 234445555555555555555


Q ss_pred             cccCCccccCCCCCcEEEcccccCccc
Q 040184          310 QGPIPLEFCQLNYLQILDLSENNISGS  336 (699)
Q Consensus       310 ~~~~~~~~~~l~~L~~L~l~~n~i~~~  336 (699)
                      .....  +..+.+++.+++++|.+...
T Consensus       268 ~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         268 SSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ccccc--ccccCccCEEeccCcccccc
Confidence            53222  45555556666665555533

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=5.7e-10  Score=118.29  Aligned_cols=84  Identities=38%  Similarity=0.524  Sum_probs=39.1

Q ss_pred             CCCCcEEEccCCcCCccCCccCcCCC-CCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEE
Q 040184          248 LRKLVSLHLDANYFTGEIPKSLSNCS-HLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQIL  326 (699)
Q Consensus       248 l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  326 (699)
                      ++.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..++.|+.|++++|++. .+|......+.|+.|
T Consensus       115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            345555555555555 2333333332 5555555555554 23233444555555555555554 222222244444445


Q ss_pred             EcccccCc
Q 040184          327 DLSENNIS  334 (699)
Q Consensus       327 ~l~~n~i~  334 (699)
                      ++++|++.
T Consensus       192 ~ls~N~i~  199 (394)
T COG4886         192 DLSGNKIS  199 (394)
T ss_pred             eccCCccc
Confidence            55544444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=1.3e-10  Score=104.94  Aligned_cols=107  Identities=24%  Similarity=0.368  Sum_probs=41.0

Q ss_pred             CCCcccEEEccCCccCccCCcccc-ccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCccc-ccCCCCC
Q 040184          492 PLNKMYGVDLSCNKLTGEIPPQIS-KLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQL-VELNALA  569 (699)
Q Consensus       492 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~  569 (699)
                      .+.++++|+|++|.|+..  +.++ .+.+|+.|+|++|.|+.+  +.+..++.|++|++++|+|+. +++.+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence            345789999999999843  3455 588999999999999965  468889999999999999994 44444 4689999


Q ss_pred             eeecccCcCcccCC-CCCcCCCCCCCCccCCCCCC
Q 040184          570 FFSVAHNNLSGKIP-EWTAQFTTFKEDSYEGNPLL  603 (699)
Q Consensus       570 ~L~l~~N~l~~~~~-~~~~~~~~l~~~~~~~Np~~  603 (699)
                      .|++++|++..... ..+..++.|+.+++.|||..
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            99999999975422 23345788899999999983

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=6.6e-10  Score=82.34  Aligned_cols=59  Identities=39%  Similarity=0.639  Sum_probs=29.9

Q ss_pred             ccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCc
Q 040184          519 RIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNN  577 (699)
Q Consensus       519 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~  577 (699)
                      +|++|++++|+++.+.++.|.++++|++|++++|+++...|..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44455555555554444455555555555555555554444455555555555555554

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=3.2e-10  Score=106.31  Aligned_cols=130  Identities=26%  Similarity=0.294  Sum_probs=85.9

Q ss_pred             CCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCC-CCCCccEE
Q 040184          271 NCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS-SHSSITQV  349 (699)
Q Consensus       271 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L  349 (699)
                      ..+.|+++|+++|.|+ .+.++..-.+.++.|+++.|.+...  ..+..+++|+.||+++|.++. ...+. .+-+++.|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeee
Confidence            3456677777777766 4455556667777777777776632  236667777777777777663 22322 56677777


Q ss_pred             EccCccccccCCcccccCCCCccEEECCCCCCCCCc-ChhhhcCCCCCEEEcccCcCCC
Q 040184          350 HLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI-PYWIERLTYLRYLILANNNLEG  407 (699)
Q Consensus       350 ~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~  407 (699)
                      .+++|.+....  + +..+-+|..||+++|+|.... ...++++|.|+.+.|.+|.+.+
T Consensus       358 ~La~N~iE~LS--G-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  358 KLAQNKIETLS--G-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ehhhhhHhhhh--h-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            77777764321  1 556677888888888886432 3456778888888888888874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=1e-09  Score=81.37  Aligned_cols=61  Identities=46%  Similarity=0.617  Sum_probs=57.8

Q ss_pred             CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcc
Q 040184          494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL  554 (699)
Q Consensus       494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  554 (699)
                      ++|+.|++++|+++...+..|..+++|++|++++|+++.+.|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999988888999999999999999999999999999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.88  E-value=2.6e-10  Score=120.93  Aligned_cols=224  Identities=24%  Similarity=0.249  Sum_probs=122.0

Q ss_pred             hccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccE
Q 040184          294 GNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVT  373 (699)
Q Consensus       294 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  373 (699)
                      ..+++|+.|++.+|.+... ...+..+++|++|++++|.|+ .+.....+..|+.|++.+|.+.....   +..+..|+.
T Consensus        92 ~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~l~~N~i~~~~~---~~~l~~L~~  166 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKELNLSGNLISDISG---LESLKSLKL  166 (414)
T ss_pred             ccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccchhhccchhhheeccCcchhccC---Cccchhhhc
Confidence            3344444444444444422 111344555555555555554 22222233335555555555533221   444666777


Q ss_pred             EECCCCCCCCCcC-hhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCC
Q 040184          374 LDLSYNSFSGYIP-YWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSL  452 (699)
Q Consensus       374 L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~  452 (699)
                      +++++|++....+ . ...+.+++.+++.+|.+...  ..+..+..+..+++..|.++..-+-                 
T Consensus       167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l-----------------  226 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGL-----------------  226 (414)
T ss_pred             ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCc-----------------
Confidence            7777777765443 2 45666777777777776522  2233344444446666665422110                 


Q ss_pred             cccccccccccccCCCCcccccceeEEeecceeeeeCCCCCC--cccEEEccCCccCccCCccccccCccCeEEccCCcC
Q 040184          453 VPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLN--KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNL  530 (699)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  530 (699)
                                                            ..+.  .|+.+++++|++. ..+..+..+..+..|++++|++
T Consensus       227 --------------------------------------~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~  267 (414)
T KOG0531|consen  227 --------------------------------------NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRI  267 (414)
T ss_pred             --------------------------------------ccchhHHHHHHhcccCccc-cccccccccccccccchhhccc
Confidence                                                  0011  2677777777776 3335567777788888888877


Q ss_pred             cccCCccccCCCCCCEEeCCCCcccc---cCCc-ccccCCCCCeeecccCcCcccCC
Q 040184          531 TGVIPVTFSNLNQVESLDISYNNLNG---KIPP-QLVELNALAFFSVAHNNLSGKIP  583 (699)
Q Consensus       531 ~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~p~-~l~~l~~L~~L~l~~N~l~~~~~  583 (699)
                      ...  ..+...+.+..+....|.+..   .... .....+.++.+++.+|+.....+
T Consensus       268 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  268 SNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            644  345556667777777777652   1111 14556777777787777765444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.79  E-value=6.8e-10  Score=117.75  Aligned_cols=243  Identities=27%  Similarity=0.257  Sum_probs=148.9

Q ss_pred             ccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEE
Q 040184          295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTL  374 (699)
Q Consensus       295 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  374 (699)
                      .+..++.+.+..|.+.. +-..+..+++|+.+++..|.|.........+++|+.|++++|.|....+   +..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc---hhhccchhhh
Confidence            44556666677777663 3344677888999999999888544334467777778888777755433   4455567777


Q ss_pred             ECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCC-cccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCc
Q 040184          375 DLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVP-IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLV  453 (699)
Q Consensus       375 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~  453 (699)
                      ++++|.|...  ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+.....  +                
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~----------------  204 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--L----------------  204 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--h----------------
Confidence            7777777643  234446777777777777764333 1 3556677777777777642111  0                


Q ss_pred             ccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCc--cCeEEccCCcCc
Q 040184          454 PAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTR--IRALNLSHNNLT  531 (699)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~  531 (699)
                                                           ..+..+..+++..|.++...  .+..+..  |+.+++++|++.
T Consensus       205 -------------------------------------~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  205 -------------------------------------DLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS  245 (414)
T ss_pred             -------------------------------------HHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc
Confidence                                                 01224444567777776322  2222333  788888888887


Q ss_pred             ccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCccc---CCCC-CcCCCCCCCCccCCCCCCC
Q 040184          532 GVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGK---IPEW-TAQFTTFKEDSYEGNPLLC  604 (699)
Q Consensus       532 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~---~~~~-~~~~~~l~~~~~~~Np~~C  604 (699)
                       ..+..+..+..+..|+++.|++...  ..+...+.+..+....|++...   .+.. ......++...+.+||..-
T Consensus       246 -~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  246 -RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             -cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence             3335667778888888888888743  3345566677777777776532   1110 1234455666666666543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=6.7e-09  Score=117.64  Aligned_cols=128  Identities=28%  Similarity=0.258  Sum_probs=81.9

Q ss_pred             CCcEEeCcCCcccccCCccccCCCCCCEEEccCCc--CCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEE
Q 040184          177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQ--LTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSL  254 (699)
Q Consensus       177 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  254 (699)
                      ..+.+.+.+|.+. .++... .++.|++|-+..|.  +. .++..+|..++.|++||+++|.-.+.+|..++.+-+|++|
T Consensus       524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            4566666666654 233322 33467777777765  44 6666666667777777777766656677777777777777


Q ss_pred             EccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCc
Q 040184          255 HLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNH  308 (699)
Q Consensus       255 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  308 (699)
                      +++++.+. .+|..+.++..|.+|++..+......+.....+++|++|.+....
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            77777776 567777777777777777665443445555557777777765543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=1e-08  Score=116.11  Aligned_cols=127  Identities=23%  Similarity=0.267  Sum_probs=68.8

Q ss_pred             cccEEEccCCcCccccchhcCCCCCCCEEEcccCc--cccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEE
Q 040184           79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSN--LKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL  156 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~--~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  156 (699)
                      ..+.+.+-+|.+... +.. .+++.|++|-+..|.  +. .++..+|..++.|++|||++|.--+.+|..++.+-+|++|
T Consensus       524 ~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             heeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            345555555544322 111 133456666666554  22 4444445566666666666654444556666666666666


Q ss_pred             EccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCC
Q 040184          157 YVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHN  210 (699)
Q Consensus       157 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  210 (699)
                      +++++.+. .+|.++.. +..|.+|++..+.-...+|.....+++|++|.+...
T Consensus       601 ~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            66666665 56666655 456666666655543344444555666666666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.55  E-value=1.1e-09  Score=114.53  Aligned_cols=108  Identities=25%  Similarity=0.314  Sum_probs=70.8

Q ss_pred             CCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeee
Q 040184          493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFS  572 (699)
Q Consensus       493 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  572 (699)
                      ++.++.|||++|+++..  ..+..++.|++|||++|.+..+.--....+. |+.|.+++|.++..  ..+.++.+|+.||
T Consensus       186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD  260 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence            45677777777777743  2677777888888888877744333334444 77888888877632  3567777788888


Q ss_pred             cccCcCcccCCCCC-cCCCCCCCCccCCCCCCCC
Q 040184          573 VAHNNLSGKIPEWT-AQFTTFKEDSYEGNPLLCG  605 (699)
Q Consensus       573 l~~N~l~~~~~~~~-~~~~~l~~~~~~~Np~~C~  605 (699)
                      +++|-|++.-.-.+ ..+..|+.+.++|||.-|.
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            88887765433211 1245566777888887774

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=3.2e-09  Score=99.74  Aligned_cols=177  Identities=22%  Similarity=0.148  Sum_probs=77.8

Q ss_pred             CCCEEEcCCCcCcc-cCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCc-ccc-cCCccccCCCCCCE
Q 040184          128 NLNTLVLRNNSLSG-PFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRND-FNG-SIPSSIGDMNSLEA  204 (699)
Q Consensus       128 ~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~-i~~-~~~~~~~~l~~L~~  204 (699)
                      .||++|||+..++. .....++.|.+|+.|.+.++++.+.+...+.+ -.+|+.|+|+.+. ++. ...-.+..|+.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            35555555544431 12222344455555555555555444444444 2355555555443 211 01112344555555


Q ss_pred             EEccCCcCCCccchH-HhhcCCCCcEEEccCCcC---CccCcccccCCCCCcEEEccCCc-CCccCCccCcCCCCCceEE
Q 040184          205 LDLSHNQLTGEIPEH-LAMSCFNLEFLVLSENSL---LGQLFSKKNYLRKLVSLHLDANY-FTGEIPKSLSNCSHLEGLY  279 (699)
Q Consensus       205 L~L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~  279 (699)
                      |++++|.+....-.. +..--++|+.|+++++.-   ...+..-...+++|.+|||+++. ++......|.+++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            555555443222111 111123455555555421   01111122345566666665543 2222223345556666666


Q ss_pred             CCCCcCcCcCchh---hhccCCCcEEeccCC
Q 040184          280 MSDNNLYGNIPAW---LGNLSSLYDIMMASN  307 (699)
Q Consensus       280 l~~n~l~~~~~~~---~~~l~~L~~L~l~~n  307 (699)
                      ++.|..  ..|..   +...++|..|++.++
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            666532  33332   344556666666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=5.5e-09  Score=98.14  Aligned_cols=178  Identities=21%  Similarity=0.171  Sum_probs=116.5

Q ss_pred             CCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCc-CCCccchHHhhcCCCCcEE
Q 040184          152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQ-LTGEIPEHLAMSCFNLEFL  230 (699)
Q Consensus       152 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L  230 (699)
                      .|+.+||++..++..--..+.+.|.+|+.|.|.++++.+.+...++.-..|+.|+++.+. ++..--..++.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            588899998888755556666778889999999999888777788888899999998764 4423344556788899999


Q ss_pred             EccCCcCCccCccc-c-cCCCCCcEEEccCCcCC---ccCCccCcCCCCCceEECCCCc-CcCcCchhhhccCCCcEEec
Q 040184          231 VLSENSLLGQLFSK-K-NYLRKLVSLHLDANYFT---GEIPKSLSNCSHLEGLYMSDNN-LYGNIPAWLGNLSSLYDIMM  304 (699)
Q Consensus       231 ~L~~n~l~~~~~~~-~-~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l  304 (699)
                      ++++|.+....... + .--++|+.|+++++.-.   ..+..-.+.+++|..|||++|. ++......|.+++-|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            99998765322111 1 11356777777775421   1111223567778888887764 33323334556677777777


Q ss_pred             cCCcccccCCcc---ccCCCCCcEEEcccc
Q 040184          305 ASNHLQGPIPLE---FCQLNYLQILDLSEN  331 (699)
Q Consensus       305 ~~n~~~~~~~~~---~~~l~~L~~L~l~~n  331 (699)
                      +.|..  ++|..   +...|.|.+||+.++
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            77643  33433   345566777776654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=8.3e-08  Score=90.39  Aligned_cols=83  Identities=16%  Similarity=0.148  Sum_probs=57.7

Q ss_pred             CCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCc-ChhhhcCCCCCEEEcccCcCCCCCCc------ccCC
Q 040184          343 HSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI-PYWIERLTYLRYLILANNNLEGEVPI------QLCR  415 (699)
Q Consensus       343 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~  415 (699)
                      ++++..+.+..|.+........+..++.+..|+|+.++|.+.. .+++.+++.|..|.++++.+....-.      .+++
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            4566777777777766555555667778888889988887643 45678888999999998887633221      2456


Q ss_pred             CCCCCEEECc
Q 040184          416 LKQLRLIDLS  425 (699)
Q Consensus       416 l~~L~~L~ls  425 (699)
                      +++++.|+=+
T Consensus       278 L~~v~vLNGs  287 (418)
T KOG2982|consen  278 LTKVQVLNGS  287 (418)
T ss_pred             ccceEEecCc
Confidence            7777777544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.40  E-value=8.7e-08  Score=89.07  Aligned_cols=243  Identities=25%  Similarity=0.229  Sum_probs=111.6

Q ss_pred             cccEEEccCCcCccccc----hhcCCCCCCCEEEcccCcc---ccccchh------hhhCCCCCCEEEcCCCcCcccCCC
Q 040184           79 QLESVALSGSGIHATFP----KFLYNQHDLEYVDFSDSNL---KGEFLNW------LLENNTNLNTLVLRNNSLSGPFRM  145 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~----~~l~~~~~L~~L~ls~n~~---~~~~~~~------~~~~l~~L~~L~Ls~n~i~~~~~~  145 (699)
                      .++.++||+|.|...-.    ..+.+-.+|+..+++.-..   .+++++.      .+.+||+|+..+||.|.+....|.
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            45555555555543322    2233445566655554221   1222221      124566666666666665544333


Q ss_pred             C----CCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchH--
Q 040184          146 P----IQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEH--  219 (699)
Q Consensus       146 ~----~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--  219 (699)
                      .    ++..+.|.+|.+++|.+....-..+++.+.+     |..|+       -.++-|.|++.....|++. ..+..  
T Consensus       111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~-----la~nK-------Kaa~kp~Le~vicgrNRle-ngs~~~~  177 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFH-----LAYNK-------KAADKPKLEVVICGRNRLE-NGSKELS  177 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHH-----HHHHh-------hhccCCCceEEEeccchhc-cCcHHHH
Confidence            2    3444556666666665431111112211000     00111       1123345555555555554 22221  


Q ss_pred             --HhhcCCCCcEEEccCCcCCcc-----CcccccCCCCCcEEEccCCcCCcc----CCccCcCCCCCceEECCCCcCcCc
Q 040184          220 --LAMSCFNLEFLVLSENSLLGQ-----LFSKKNYLRKLVSLHLDANYFTGE----IPKSLSNCSHLEGLYMSDNNLYGN  288 (699)
Q Consensus       220 --~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~  288 (699)
                        .+..-..|+++.+..|.|...     ....+..+++|+.||++.|.++..    +..++...+.|+.|.+.+|-++..
T Consensus       178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~  257 (388)
T COG5238         178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE  257 (388)
T ss_pred             HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence              112223555666655554321     112234456677777777766532    224455666677777777766543


Q ss_pred             Cchhh----h--ccCCCcEEeccCCcccccCCcc-------ccCCCCCcEEEcccccCc
Q 040184          289 IPAWL----G--NLSSLYDIMMASNHLQGPIPLE-------FCQLNYLQILDLSENNIS  334 (699)
Q Consensus       289 ~~~~~----~--~l~~L~~L~l~~n~~~~~~~~~-------~~~l~~L~~L~l~~n~i~  334 (699)
                      ....+    .  ..++|..|...+|...+.+...       -..+|-|..+.+.+|++.
T Consensus       258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             cHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            33222    1  1356666666666554322111       123455555666666655

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.37  E-value=5.6e-09  Score=109.39  Aligned_cols=127  Identities=28%  Similarity=0.232  Sum_probs=83.4

Q ss_pred             CCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEe
Q 040184          103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN  182 (699)
Q Consensus       103 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~  182 (699)
                      .|.+.+++.|.+. .+-.+ +.-++.|+.|+|++|++...  +.+..+++|++|||+.|.+. .+|.--...+ +|+.|+
T Consensus       165 ~L~~a~fsyN~L~-~mD~S-Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDES-LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHH-HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence            4667777777765 23233 35667788888888877753  25777778888888888776 4553332324 588888


Q ss_pred             CcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcC
Q 040184          183 LSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL  237 (699)
Q Consensus       183 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  237 (699)
                      +++|.++..  ..+.++.+|+.||+++|-+.+.-.-.....+..|+.|+|.+|.+
T Consensus       239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            888877632  35667778888888888776433222233466778888888766

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=5.3e-07  Score=85.10  Aligned_cols=58  Identities=19%  Similarity=0.163  Sum_probs=26.1

Q ss_pred             CCCCcEEEccCCcCCcc-CcccccCCCCCcEEEccCCcCCccCC------ccCcCCCCCceEECC
Q 040184          224 CFNLEFLVLSENSLLGQ-LFSKKNYLRKLVSLHLDANYFTGEIP------KSLSNCSHLEGLYMS  281 (699)
Q Consensus       224 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~l~  281 (699)
                      .+.+..|+|+.+++.+. ..+.+.+++.|.-|.++++.+.....      --++.+++++.|+-+
T Consensus       223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            33444444444444221 12334445555555555555442211      124566777777644

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.08  E-value=1.2e-07  Score=93.73  Aligned_cols=257  Identities=19%  Similarity=0.153  Sum_probs=123.1

Q ss_pred             CCccccEEEccCCc-Cccccc-hhcCCCCCCCEEEcccC-ccccccchhhhhCCCCCCEEEcCCCc-CcccCC-CCCCCC
Q 040184           76 PKFQLESVALSGSG-IHATFP-KFLYNQHDLEYVDFSDS-NLKGEFLNWLLENNTNLNTLVLRNNS-LSGPFR-MPIQPH  150 (699)
Q Consensus        76 ~~~~L~~L~ls~~~-i~~~~~-~~l~~~~~L~~L~ls~n-~~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l  150 (699)
                      .++++++|++.+|. ++...- ..-..|++|+.|++..| .+++.....+...+++|++++++.+. +.+... .....+
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~  241 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC  241 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence            34456666666653 322211 22235666777776663 35544445455666777777776652 332111 113344


Q ss_pred             CCCCEEEccCccCC-ccCchhhhhcCCCCcEEeCcCCc-ccccCC-ccccCCCCCCEEEccCCc-CCCccchHHhhcCCC
Q 040184          151 WHLDTLYVSKNFFQ-GNIPLEIGVYFPRLVYLNLSRND-FNGSIP-SSIGDMNSLEALDLSHNQ-LTGEIPEHLAMSCFN  226 (699)
Q Consensus       151 ~~L~~L~l~~n~i~-~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~  226 (699)
                      +.++.+.+.+|.=. .+.-..+...++.+..+++..|. +++..- ..-..+..|+.|+.+++. ++..+-..+..++.+
T Consensus       242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~  321 (483)
T KOG4341|consen  242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN  321 (483)
T ss_pred             hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence            45555555544311 01111222233445556655543 222110 111235666777776653 222223334456677


Q ss_pred             CcEEEccCCcC-CccCcccc-cCCCCCcEEEccCCcCCc--cCCccCcCCCCCceEECCCCcCc-CcC----chhhhccC
Q 040184          227 LEFLVLSENSL-LGQLFSKK-NYLRKLVSLHLDANYFTG--EIPKSLSNCSHLEGLYMSDNNLY-GNI----PAWLGNLS  297 (699)
Q Consensus       227 L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~-~~~----~~~~~~l~  297 (699)
                      |+.+.++.++- +......+ .+.+.|+.+++..+....  .+...-.+++.|+.|.+++|... +..    ...-..+.
T Consensus       322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~  401 (483)
T KOG4341|consen  322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE  401 (483)
T ss_pred             eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence            77777776653 11111111 345566666666654321  11222245667777777766432 111    11123345


Q ss_pred             CCcEEeccCCccc-ccCCccccCCCCCcEEEccccc
Q 040184          298 SLYDIMMASNHLQ-GPIPLEFCQLNYLQILDLSENN  332 (699)
Q Consensus       298 ~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~  332 (699)
                      .|..+.++++... ...-+.+..+++|+.+++-.++
T Consensus       402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            6777777776543 2223345566677777766654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.07  E-value=2.8e-07  Score=76.78  Aligned_cols=89  Identities=20%  Similarity=0.328  Sum_probs=59.0

Q ss_pred             CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184          494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV  573 (699)
Q Consensus       494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  573 (699)
                      +.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|-.||.-+|.+. .+|-.+-.-+.....++
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~l  153 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKL  153 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHh
Confidence            45667777777777 46666888888888888888887 55666666888888888888776 44433322223333445


Q ss_pred             ccCcCcccCCCC
Q 040184          574 AHNNLSGKIPEW  585 (699)
Q Consensus       574 ~~N~l~~~~~~~  585 (699)
                      .++++.+..+..
T Consensus       154 gnepl~~~~~~k  165 (177)
T KOG4579|consen  154 GNEPLGDETKKK  165 (177)
T ss_pred             cCCcccccCccc
Confidence            566666655543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.02  E-value=3.1e-07  Score=76.46  Aligned_cols=106  Identities=26%  Similarity=0.386  Sum_probs=63.4

Q ss_pred             CCEEEcCCCcCccc--CCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEE
Q 040184          129 LNTLVLRNNSLSGP--FRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALD  206 (699)
Q Consensus       129 L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  206 (699)
                      +..++|++|.+...  .+..+.....|+..++++|.+. ..|..+...+|.++.+++++|.|. .+|..++.++.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            44455555544311  1112333445566666666666 566666666667777777777776 4566677777777777


Q ss_pred             ccCCcCCCccchHHhhcCCCCcEEEccCCcCC
Q 040184          207 LSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL  238 (699)
Q Consensus       207 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  238 (699)
                      ++.|.+. ..|..++. +.++-.|+..+|.+.
T Consensus       107 l~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAP-LIKLDMLDSPENARA  136 (177)
T ss_pred             cccCccc-cchHHHHH-HHhHHHhcCCCCccc
Confidence            7777776 56655553 666666666666543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.94  E-value=6.6e-06  Score=76.86  Aligned_cols=142  Identities=25%  Similarity=0.177  Sum_probs=80.5

Q ss_pred             hhcCCCCCCCEEEcccCccccccchhh---hhCCCCCCEEEcCCCcCcccCCCC-------------CCCCCCCCEEEcc
Q 040184           96 KFLYNQHDLEYVDFSDSNLKGEFLNWL---LENNTNLNTLVLRNNSLSGPFRMP-------------IQPHWHLDTLYVS  159 (699)
Q Consensus        96 ~~l~~~~~L~~L~ls~n~~~~~~~~~~---~~~l~~L~~L~Ls~n~i~~~~~~~-------------~~~l~~L~~L~l~  159 (699)
                      .++.+||+|+..+||.|.+....|+.+   +++-+.|.+|.+++|.+.-..-..             ..+-+.|++....
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            456789999999999998876666543   456678999999988764221111             2234567777777


Q ss_pred             CccCCccCchhh----hhcCCCCcEEeCcCCcccccC-----CccccCCCCCCEEEccCCcCCCccchH---HhhcCCCC
Q 040184          160 KNFFQGNIPLEI----GVYFPRLVYLNLSRNDFNGSI-----PSSIGDMNSLEALDLSHNQLTGEIPEH---LAMSCFNL  227 (699)
Q Consensus       160 ~n~i~~~~~~~~----~~~~~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L  227 (699)
                      .|++. ..++..    ++.-..|+++.+..|.|....     -..+..+.+|+.||+..|.++..-...   +...++.|
T Consensus       166 rNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l  244 (388)
T COG5238         166 RNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             cchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence            77765 333222    221235677777777664221     112234566777777776665211111   11123445


Q ss_pred             cEEEccCCcCC
Q 040184          228 EFLVLSENSLL  238 (699)
Q Consensus       228 ~~L~L~~n~l~  238 (699)
                      +.|.+..|-++
T Consensus       245 rEL~lnDClls  255 (388)
T COG5238         245 RELRLNDCLLS  255 (388)
T ss_pred             hhccccchhhc
Confidence            55555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.92  E-value=6.8e-06  Score=91.17  Aligned_cols=149  Identities=22%  Similarity=0.221  Sum_probs=91.1

Q ss_pred             cccEEEccCCc-CccccchhcC-CCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEE
Q 040184           79 QLESVALSGSG-IHATFPKFLY-NQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL  156 (699)
Q Consensus        79 ~L~~L~ls~~~-i~~~~~~~l~-~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  156 (699)
                      +|++|+++|.. +....|..++ .+|+|++|.+++-.+...--..++.++++|..||+|+.+++..  ..++++++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            68888888763 3333344443 4688888888887765333344567888888888888887754  457778888888


Q ss_pred             EccCccCCc-cCchhhhhcCCCCcEEeCcCCcccccC------CccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcE
Q 040184          157 YVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSI------PSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF  229 (699)
Q Consensus       157 ~l~~n~i~~-~~~~~~~~~~~~L~~L~L~~n~i~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  229 (699)
                      .+.+-.+.. ..-.++|. +++|++||+|........      -+.-..+|.|+.||.|++.+...+-+.+...-++|+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             hccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            777766642 22245665 677888888766543211      0112235666677776666654444444333344444


Q ss_pred             E
Q 040184          230 L  230 (699)
Q Consensus       230 L  230 (699)
                      +
T Consensus       280 i  280 (699)
T KOG3665|consen  280 I  280 (699)
T ss_pred             h
Confidence            3

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.87  E-value=3.5e-05  Score=67.17  Aligned_cols=123  Identities=20%  Similarity=0.276  Sum_probs=43.2

Q ss_pred             hhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcC
Q 040184           96 KFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYF  175 (699)
Q Consensus        96 ~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~  175 (699)
                      .+|.++++|+.+.+.. .+. .+....|.++++|+.+.+..+ +.......|..+++++.+.+.+ .+. .++...+..+
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~   80 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC   80 (129)
T ss_dssp             TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred             HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence            3444555555555543 233 344444455555555555442 4433444455554555555543 222 2334444444


Q ss_pred             CCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCC
Q 040184          176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNL  227 (699)
Q Consensus       176 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  227 (699)
                      ++++.+++..+ +..+....|.++ .|+.+.+.. .+. .++...|.++++|
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            55555555443 333344445554 555555544 233 4444444444444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.86  E-value=3e-05  Score=69.54  Aligned_cols=108  Identities=23%  Similarity=0.229  Sum_probs=60.4

Q ss_pred             hhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCcc-CcccccCCCC
Q 040184          172 GVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ-LFSKKNYLRK  250 (699)
Q Consensus       172 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~  250 (699)
                      +....+...+||++|.+..  -..|..++.|.+|.+.+|+|+ .|...+...+++|+.|.+.+|++... ....+..++.
T Consensus        38 g~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   38 GATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK  114 (233)
T ss_pred             cccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence            3334466677777777652  234666677777777777776 66666555566677777777665321 1122344555


Q ss_pred             CcEEEccCCcCCccCC---ccCcCCCCCceEECCC
Q 040184          251 LVSLHLDANYFTGEIP---KSLSNCSHLEGLYMSD  282 (699)
Q Consensus       251 L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~  282 (699)
                      |++|.+-+|.++....   ..+..+++|+.||.++
T Consensus       115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            5666555555542211   2234455555555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.85  E-value=1.1e-06  Score=86.95  Aligned_cols=259  Identities=19%  Similarity=0.086  Sum_probs=142.6

Q ss_pred             CCCCcEEeCCCCCCCCCCC-cccccCCCCCCEEeCCCCc-ccccCCcc-cccCCCCCcEEEcccCccccccccccCCCCC
Q 040184            1 MTSLRVLSLDLNQLTGNIS-SSPLIHLTSIERLFLSYNQ-FQIPFSLE-PFFNNSKLKVFSGECNEIFVESESSHSMTPK   77 (699)
Q Consensus         1 l~~L~~L~ls~n~l~~~i~-~~~~~~l~~L~~L~Ls~n~-~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~   77 (699)
                      +++++.|++.++....+.. .+.-..|++|++|++-.|. ++ ..... --..+++|++|+++.+.-...........++
T Consensus       163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT-~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~  241 (483)
T KOG4341|consen  163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT-DVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC  241 (483)
T ss_pred             CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH-HHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence            4677777777665221111 1112358888888888853 33 22222 2235788888888877543322222223444


Q ss_pred             ccccEEEccCCcCccc--cchhcCCCCCCCEEEcccCc-cccccchhhhhCCCCCCEEEcCCCcC-cccCCCC-CCCCCC
Q 040184           78 FQLESVALSGSGIHAT--FPKFLYNQHDLEYVDFSDSN-LKGEFLNWLLENNTNLNTLVLRNNSL-SGPFRMP-IQPHWH  152 (699)
Q Consensus        78 ~~L~~L~ls~~~i~~~--~~~~l~~~~~L~~L~ls~n~-~~~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~-~~~l~~  152 (699)
                      ..++.+.+.||.=.+.  +...=+.+..+..+++..+. +++...-.+-..+..|++|+.+++.- .+..... -.++.+
T Consensus       242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~  321 (483)
T KOG4341|consen  242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN  321 (483)
T ss_pred             hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence            4566776666532111  11111345556666665654 44333223335677888888877633 2221112 245577


Q ss_pred             CCEEEccCcc-CCccCchhhhhcCCCCcEEeCcCCcccc--cCCccccCCCCCCEEEccCCcCCCccc----hHHhhcCC
Q 040184          153 LDTLYVSKNF-FQGNIPLEIGVYFPRLVYLNLSRNDFNG--SIPSSIGDMNSLEALDLSHNQLTGEIP----EHLAMSCF  225 (699)
Q Consensus       153 L~~L~l~~n~-i~~~~~~~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~l~  225 (699)
                      |+.+.+++++ +++.--..+...++.|+.+++.++....  .+...-.+++.|++|.++++.....-.    ........
T Consensus       322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~  401 (483)
T KOG4341|consen  322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE  401 (483)
T ss_pred             eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence            8888888776 3333334556667788888888776432  122223467788888888775431110    11112356


Q ss_pred             CCcEEEccCCcCC-ccCcccccCCCCCcEEEccCCc
Q 040184          226 NLEFLVLSENSLL-GQLFSKKNYLRKLVSLHLDANY  260 (699)
Q Consensus       226 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~  260 (699)
                      .|+.+.++++... ......+..+++|+.+++-++.
T Consensus       402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            7888888887653 3334455667788887776654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=9.2e-06  Score=54.81  Aligned_cols=36  Identities=36%  Similarity=0.654  Sum_probs=14.4

Q ss_pred             ccCeEEccCCcCcccCCccccCCCCCCEEeCCCCccc
Q 040184          519 RIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLN  555 (699)
Q Consensus       519 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  555 (699)
                      +|++|++++|+|+. +|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34444444444442 2223444444444444444443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=1.1e-05  Score=54.52  Aligned_cols=38  Identities=32%  Similarity=0.622  Sum_probs=32.4

Q ss_pred             CCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcc
Q 040184          542 NQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG  580 (699)
Q Consensus       542 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  580 (699)
                      ++|++|++++|+|+ .+|..+.++++|+.|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999 567679999999999999999974

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.76  E-value=7.2e-05  Score=65.18  Aligned_cols=101  Identities=19%  Similarity=0.280  Sum_probs=32.3

Q ss_pred             CCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEE
Q 040184          175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSL  254 (699)
Q Consensus       175 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  254 (699)
                      +++|+.+.+.. .+..+...+|..+++|+.+.+.++ +. .++...|..+++++.+.+.. .+.......|..+++++.+
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            33444444432 233333334444444444444442 33 34444444444444444432 2222222333334444444


Q ss_pred             EccCCcCCccCCccCcCCCCCceEECC
Q 040184          255 HLDANYFTGEIPKSLSNCSHLEGLYMS  281 (699)
Q Consensus       255 ~L~~n~i~~~~~~~~~~l~~L~~L~l~  281 (699)
                      ++..+ +......+|.++ +|+.+.+.
T Consensus        87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   87 DIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             EETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            44332 222333334443 44444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.72  E-value=8.4e-06  Score=90.42  Aligned_cols=136  Identities=22%  Similarity=0.277  Sum_probs=77.3

Q ss_pred             CCCcEEEcccCccccccccccCCCCCccccEEEccCCcCcc-ccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCC
Q 040184           52 SKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHA-TFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLN  130 (699)
Q Consensus        52 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~-~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~  130 (699)
                      .+|++||+++.......-......-+|+|++|.+++-.+.. .......++++|..||+|+++++ .+ .. .+++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~G-IS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SG-ISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HH-HhccccHH
Confidence            56777777665443211111111224477777777655432 22334456777777777777776 23 23 36777777


Q ss_pred             EEEcCCCcCcc-cCCCCCCCCCCCCEEEccCccCCccCc------hhhhhcCCCCcEEeCcCCccccc
Q 040184          131 TLVLRNNSLSG-PFRMPIQPHWHLDTLYVSKNFFQGNIP------LEIGVYFPRLVYLNLSRNDFNGS  191 (699)
Q Consensus       131 ~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~------~~~~~~~~~L~~L~L~~n~i~~~  191 (699)
                      +|.+.+=.+.. ..-..+.++++|+.||+|..+... .+      .+.+..+|+|+.||.+++.+...
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            77776544442 112235567778888887765431 12      12233477888888888777643

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.67  E-value=0.00012  Score=74.83  Aligned_cols=32  Identities=13%  Similarity=0.387  Sum_probs=16.9

Q ss_pred             CccCeEEccCCcCcccCCccccCCCCCCEEeCCCC
Q 040184          518 TRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN  552 (699)
Q Consensus       518 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  552 (699)
                      ++|++|++++|... ..|..+.  .+|+.|+++.|
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            35666666666554 2333333  45666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.64  E-value=6.3e-05  Score=67.54  Aligned_cols=82  Identities=18%  Similarity=0.232  Sum_probs=35.9

Q ss_pred             ccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCC-CCCcCCCCCCCCcc
Q 040184          519 RIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP-EWTAQFTTFKEDSY  597 (699)
Q Consensus       519 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~~~~  597 (699)
                      +...+||++|.+...  +.|..++.|.+|.|++|+|+.+.|.--.-++.|+.|.+.+|++...-. ..+..+++|+.+++
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            344455555554422  344444555555555555554444333344445555555554432111 11122344455555


Q ss_pred             CCCCC
Q 040184          598 EGNPL  602 (699)
Q Consensus       598 ~~Np~  602 (699)
                      .|||.
T Consensus       121 l~Npv  125 (233)
T KOG1644|consen  121 LGNPV  125 (233)
T ss_pred             cCCch
Confidence            55544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.44  E-value=0.00053  Score=70.18  Aligned_cols=137  Identities=12%  Similarity=0.159  Sum_probs=86.2

Q ss_pred             ccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccC
Q 040184          365 FFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHN  444 (699)
Q Consensus       365 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~  444 (699)
                      +..+..++.|++++|.++.. |.   -..+|+.|.+++|.-....|+.+  .++|++|++++|.....+|          
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP----------  111 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP----------  111 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----------
Confidence            44567888999999887743 41   22468999998865434556544  2578899998884222222          


Q ss_pred             CCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCc--cCCccccccCccCe
Q 040184          445 NGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG--EIPPQISKLTRIRA  522 (699)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~  522 (699)
                                                                       ++|+.|+++++....  .+|      ++|+.
T Consensus       112 -------------------------------------------------~sLe~L~L~~n~~~~L~~LP------ssLk~  136 (426)
T PRK15386        112 -------------------------------------------------ESVRSLEIKGSATDSIKNVP------NGLTS  136 (426)
T ss_pred             -------------------------------------------------cccceEEeCCCCCcccccCc------chHhh
Confidence                                                             357777777665431  223      35777


Q ss_pred             EEccCCc-Cc-ccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCc
Q 040184          523 LNLSHNN-LT-GVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNN  577 (699)
Q Consensus       523 L~Ls~N~-l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~  577 (699)
                      |.+.+++ .. ..+|..+  .++|++|++++|... ..|+.+.  .+|+.|+++.|.
T Consensus       137 L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        137 LSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             eecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            7775433 21 1112111  268999999999876 4555444  589999998874

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.07  E-value=7.6e-05  Score=81.67  Aligned_cols=35  Identities=17%  Similarity=0.091  Sum_probs=16.9

Q ss_pred             ccEEECCCCCCCCCc-Chhhhc-CCCCCEEEcccCcC
Q 040184          371 IVTLDLSYNSFSGYI-PYWIER-LTYLRYLILANNNL  405 (699)
Q Consensus       371 L~~L~Ls~n~i~~~~-~~~~~~-l~~L~~L~L~~n~l  405 (699)
                      ++.|+++.+...... -..... +..++.+++.++..
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            666666665533211 111111 45566666666544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.87  E-value=0.00061  Score=64.17  Aligned_cols=107  Identities=18%  Similarity=0.115  Sum_probs=63.1

Q ss_pred             ccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccC--ccccccccccCCCCCccccEEEccCCcCccc-cchhcC
Q 040184           23 LIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECN--EIFVESESSHSMTPKFQLESVALSGSGIHAT-FPKFLY   99 (699)
Q Consensus        23 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n--~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~-~~~~l~   99 (699)
                      ...+..|+.|++.+..++   +...|..|++|+.|.++.|  ++........  ..+++|+++++++|++... --.-+.
T Consensus        39 ~d~~~~le~ls~~n~glt---t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~--e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLT---TLTNFPKLPKLKKLELSDNYRRVSGGLEVLA--EKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             cccccchhhhhhhcccee---ecccCCCcchhhhhcccCCcccccccceehh--hhCCceeEEeecCCccccccccchhh
Confidence            445667777777777665   2234677888888888888  4433322222  3335788888888877521 112244


Q ss_pred             CCCCCCEEEcccCcccc--ccchhhhhCCCCCCEEEc
Q 040184          100 NQHDLEYVDFSDSNLKG--EFLNWLLENNTNLNTLVL  134 (699)
Q Consensus       100 ~~~~L~~L~ls~n~~~~--~~~~~~~~~l~~L~~L~L  134 (699)
                      .+++|..|++.+|..+.  ..-..+|.-+++|++|+-
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            56667777777776552  112334566667776653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.83  E-value=0.00013  Score=79.83  Aligned_cols=127  Identities=25%  Similarity=0.100  Sum_probs=57.7

Q ss_pred             CCCCCCEEEcccCc-cccccchhhhhCCCCCCEEEcCCCc-CcccCC-CCCCCCCCCCEEEccCccCC-ccCchhhhhcC
Q 040184          100 NQHDLEYVDFSDSN-LKGEFLNWLLENNTNLNTLVLRNNS-LSGPFR-MPIQPHWHLDTLYVSKNFFQ-GNIPLEIGVYF  175 (699)
Q Consensus       100 ~~~~L~~L~ls~n~-~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~~~  175 (699)
                      .+++|+.|+++.+. +++.....+...+++|++|.+.++. +++..- .....++.|++|+++++... ...-..+...+
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c  320 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC  320 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence            44556666666555 4444444443445666666655554 332211 11234455666666655432 11112223345


Q ss_pred             CCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCC--ccchHHhhcCCCCcEEEccCCc
Q 040184          176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTG--EIPEHLAMSCFNLEFLVLSENS  236 (699)
Q Consensus       176 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~  236 (699)
                      ++++.|.+....-          +..++.+.+.......  .........+++++.+.+..+.
T Consensus       321 ~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  321 PNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             cchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            6666654432221          3333444433322211  2233334456666666666655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.76  E-value=0.00053  Score=64.56  Aligned_cols=12  Identities=33%  Similarity=0.409  Sum_probs=5.4

Q ss_pred             CCCCCEEEcCCC
Q 040184          126 NTNLNTLVLRNN  137 (699)
Q Consensus       126 l~~L~~L~Ls~n  137 (699)
                      +++|++|.++.|
T Consensus        64 Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   64 LPKLKKLELSDN   75 (260)
T ss_pred             cchhhhhcccCC
Confidence            344444444444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.00011  Score=69.15  Aligned_cols=100  Identities=25%  Similarity=0.282  Sum_probs=58.2

Q ss_pred             CCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEE
Q 040184          102 HDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL  181 (699)
Q Consensus       102 ~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L  181 (699)
                      .+.+.|++.+|.+++ +  +++.+++.|++|.||-|+|+..  ..+..|++|++|.|..|.|.+.-.....+.+|+|++|
T Consensus        19 ~~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccH-H--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            355667777777763 2  2356777777777777777653  3366667777777777766532223334446666666


Q ss_pred             eCcCCcccccCCc-----cccCCCCCCEEE
Q 040184          182 NLSRNDFNGSIPS-----SIGDMNSLEALD  206 (699)
Q Consensus       182 ~L~~n~i~~~~~~-----~~~~l~~L~~L~  206 (699)
                      .|..|.-.+..+.     .+..+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            6666654433222     233455555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.11  E-value=0.00029  Score=66.41  Aligned_cols=18  Identities=33%  Similarity=0.193  Sum_probs=8.8

Q ss_pred             ccCCCCccEEECCCCCCC
Q 040184          365 FFNRSSIVTLDLSYNSFS  382 (699)
Q Consensus       365 ~~~~~~L~~L~Ls~n~i~  382 (699)
                      +.++++|+.|.|..|.-.
T Consensus        84 LknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             HhcCchhhhHhhccCCcc
Confidence            444555555555554433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.82  E-value=0.01  Score=33.16  Aligned_cols=12  Identities=58%  Similarity=0.703  Sum_probs=4.9

Q ss_pred             CCEEeCCCCccc
Q 040184          544 VESLDISYNNLN  555 (699)
Q Consensus       544 L~~L~Ls~N~l~  555 (699)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.46  E-value=0.014  Score=32.56  Aligned_cols=19  Identities=58%  Similarity=0.814  Sum_probs=9.7

Q ss_pred             cCeEEccCCcCcccCCcccc
Q 040184          520 IRALNLSHNNLTGVIPVTFS  539 (699)
Q Consensus       520 L~~L~Ls~N~l~~~~~~~~~  539 (699)
                      |++|+|++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            555566666555 3333343

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.44  E-value=0.0013  Score=70.16  Aligned_cols=187  Identities=27%  Similarity=0.213  Sum_probs=92.1

Q ss_pred             ccEEEccCCcCccccc----hhcCCCCCCCEEEcccCccccccchhhhhCC----CCCCEEEcCCCcCcccC----CCCC
Q 040184           80 LESVALSGSGIHATFP----KFLYNQHDLEYVDFSDSNLKGEFLNWLLENN----TNLNTLVLRNNSLSGPF----RMPI  147 (699)
Q Consensus        80 L~~L~ls~~~i~~~~~----~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l----~~L~~L~Ls~n~i~~~~----~~~~  147 (699)
                      +.++.|.+|.+.....    .++...++|+.|++++|.+.+.....+...+    ..+++|++..|.+++..    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6677777776654422    3445667777777777777644333332222    23455555555554321    1223


Q ss_pred             CCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCc----cccCCCCCCEEEccCCcCCCccchH---H
Q 040184          148 QPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPS----SIGDMNSLEALDLSHNQLTGEIPEH---L  220 (699)
Q Consensus       148 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~---~  220 (699)
                      .....++.++++.|.+...   +.                  -.++.    .+....++++|++.+|.++......   .
T Consensus       169 ~~~~~l~~l~l~~n~l~~~---g~------------------~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~  227 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIEL---GL------------------LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV  227 (478)
T ss_pred             hcccchhHHHHHhcccchh---hh------------------HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence            3344455555554443200   00                  01111    1223445566666666554211111   1


Q ss_pred             hhcCCC-CcEEEccCCcCCcc----CcccccCC-CCCcEEEccCCcCCccCC----ccCcCCCCCceEECCCCcCcC
Q 040184          221 AMSCFN-LEFLVLSENSLLGQ----LFSKKNYL-RKLVSLHLDANYFTGEIP----KSLSNCSHLEGLYMSDNNLYG  287 (699)
Q Consensus       221 ~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~  287 (699)
                      ....+. +..+++..|.+.+.    ....+..+ ..+++++++.|.++....    ..+..++.++.+.+++|.+..
T Consensus       228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            112222 44466666655422    12223333 566777777777764332    345566788888888887754

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.78  E-value=0.00086  Score=71.43  Aligned_cols=137  Identities=28%  Similarity=0.287  Sum_probs=69.2

Q ss_pred             CCCEEEcccCccccccchhh---hhCCCCCCEEEcCCCcCcc----cCCC----CCCCCCCCCEEEccCccCCccCch--
Q 040184          103 DLEYVDFSDSNLKGEFLNWL---LENNTNLNTLVLRNNSLSG----PFRM----PIQPHWHLDTLYVSKNFFQGNIPL--  169 (699)
Q Consensus       103 ~L~~L~ls~n~~~~~~~~~~---~~~l~~L~~L~Ls~n~i~~----~~~~----~~~~l~~L~~L~l~~n~i~~~~~~--  169 (699)
                      .+++|++..|.+++.....+   +.....++.++++.|.+..    ..+.    .+....++++|.+++|.++.....  
T Consensus       145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l  224 (478)
T KOG4308|consen  145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL  224 (478)
T ss_pred             HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence            34455555555543222111   1224455555555554421    0111    223455677777777766522111  


Q ss_pred             -hhhhcCCC-CcEEeCcCCccccc----CCccccCC-CCCCEEEccCCcCCCccchHH---hhcCCCCcEEEccCCcCCc
Q 040184          170 -EIGVYFPR-LVYLNLSRNDFNGS----IPSSIGDM-NSLEALDLSHNQLTGEIPEHL---AMSCFNLEFLVLSENSLLG  239 (699)
Q Consensus       170 -~~~~~~~~-L~~L~L~~n~i~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~L~~n~l~~  239 (699)
                       ......+. +..+++..|.+.+.    ....+..+ ..++.++++.|.++..-...+   ...++.++++.++.|.+..
T Consensus       225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence             11111233 55577777776532    22233444 567788888888774332222   1246678888888887653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.64  E-value=0.0052  Score=56.68  Aligned_cols=84  Identities=20%  Similarity=0.234  Sum_probs=73.8

Q ss_pred             CCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeee
Q 040184          493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFS  572 (699)
Q Consensus       493 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  572 (699)
                      +...+.||++.|++. .....|+-++.|..|+++.|.+. ..|..++....+..+++..|..+ ..|.++...+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            467888999999987 45677888999999999999998 78888999999999999999998 7888999999999999


Q ss_pred             cccCcCc
Q 040184          573 VAHNNLS  579 (699)
Q Consensus       573 l~~N~l~  579 (699)
                      +-+|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999864

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.60  E-value=0.015  Score=52.82  Aligned_cols=84  Identities=19%  Similarity=0.074  Sum_probs=48.5

Q ss_pred             CCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCC-cCccccchhcCCCCCCC
Q 040184           27 TSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGS-GIHATFPKFLYNQHDLE  105 (699)
Q Consensus        27 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~-~i~~~~~~~l~~~~~L~  105 (699)
                      ..++.+|-++..|. ....+.+.+++.++.|.+.++.......-.......++|+.|++++| .|+......+..+++|+
T Consensus       101 ~~IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIM-YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             ceEEEEecCCchHH-HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            45678888888876 45666777777777777777654322111110112235666666665 45555445555556666


Q ss_pred             EEEccc
Q 040184          106 YVDFSD  111 (699)
Q Consensus       106 ~L~ls~  111 (699)
                      .|.+.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            655543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.84  E-value=0.15  Score=29.68  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=10.7

Q ss_pred             CCCCcEEeCCCCCCCCCCCccc
Q 040184            1 MTSLRVLSLDLNQLTGNISSSP   22 (699)
Q Consensus         1 l~~L~~L~ls~n~l~~~i~~~~   22 (699)
                      |++|++|+|++|.|+ .+|..+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHH
Confidence            345555555555555 444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.84  E-value=0.15  Score=29.68  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=10.7

Q ss_pred             CCCCcEEeCCCCCCCCCCCccc
Q 040184            1 MTSLRVLSLDLNQLTGNISSSP   22 (699)
Q Consensus         1 l~~L~~L~ls~n~l~~~i~~~~   22 (699)
                      |++|++|+|++|.|+ .+|..+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHH
Confidence            345555555555555 444433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.78  E-value=0.024  Score=51.50  Aligned_cols=83  Identities=16%  Similarity=0.084  Sum_probs=53.5

Q ss_pred             cccEEEccCCcCccccchhcCCCCCCCEEEcccCc-cccccchhhhhCCCCCCEEEcCCC-cCcccCCCCCCCCCCCCEE
Q 040184           79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSN-LKGEFLNWLLENNTNLNTLVLRNN-SLSGPFRMPIQPHWHLDTL  156 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~-~~~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L  156 (699)
                      .++.+|-+++.|..+.-+.+.+++.++.|.+.+|. +.+.-.+.+-.-.++|+.|++++| +|++-....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            68888888888877777778888888888888776 332222222223467777777766 4554444445556666666


Q ss_pred             EccCc
Q 040184          157 YVSKN  161 (699)
Q Consensus       157 ~l~~n  161 (699)
                      .+.+-
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            65543

>TIGR00864 PCC polycystin cation channel protein

Probab=91.33  E-value=0.042  Score=68.41  Aligned_cols=36  Identities=19%  Similarity=0.135  Sum_probs=23.2

Q ss_pred             eCCCCcccccCCcccccCCCCCeeecccCcCcccCC
Q 040184          548 DISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP  583 (699)
Q Consensus       548 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~  583 (699)
                      ||++|+|+...+..|..+++|+.|+|++|++.|-+.
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~   36 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG   36 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence            466677765555666666666666666666666554

Note: this model has been restricted to the amino half because for technical reasons.

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.64  E-value=0.18  Score=29.35  Aligned_cols=13  Identities=38%  Similarity=0.636  Sum_probs=6.2

Q ss_pred             CCCEEeCCCCccc
Q 040184          543 QVESLDISYNNLN  555 (699)
Q Consensus       543 ~L~~L~Ls~N~l~  555 (699)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.64  E-value=0.18  Score=29.35  Aligned_cols=13  Identities=38%  Similarity=0.636  Sum_probs=6.2

Q ss_pred             CCCEEeCCCCccc
Q 040184          543 QVESLDISYNNLN  555 (699)
Q Consensus       543 ~L~~L~Ls~N~l~  555 (699)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.54  E-value=0.19  Score=25.91  Aligned_cols=11  Identities=64%  Similarity=0.921  Sum_probs=3.6

Q ss_pred             CCEEEccCCcC
Q 040184          202 LEALDLSHNQL  212 (699)
Q Consensus       202 L~~L~L~~n~l  212 (699)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444444

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.43  E-value=0.01  Score=54.79  Aligned_cols=89  Identities=22%  Similarity=0.298  Sum_probs=76.8

Q ss_pred             ccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCC
Q 040184          512 PQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTT  591 (699)
Q Consensus       512 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  591 (699)
                      ..+......+.||++.|++. -....|+.++.|..||++.|++. ..|..+.+...++.+++.+|..+ ..|..+.+.+.
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            34677889999999999997 45567888999999999999998 78888899899999999989887 57777888999


Q ss_pred             CCCCccCCCCCC
Q 040184          592 FKEDSYEGNPLL  603 (699)
Q Consensus       592 l~~~~~~~Np~~  603 (699)
                      ++....-+||+.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            999999999865

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.40  E-value=0.18  Score=28.65  Aligned_cols=15  Identities=33%  Similarity=0.598  Sum_probs=6.7

Q ss_pred             CCCCEEeCCCCcccc
Q 040184          542 NQVESLDISYNNLNG  556 (699)
Q Consensus       542 ~~L~~L~Ls~N~l~~  556 (699)
                      ++|++|+|++|+|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555543

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	699
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-50
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-50
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-12
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		3e-05

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  196 bits (498), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 192/678 (28%), Positives = 292/678 (43%), Gaps = 95/678 (14%)
Query: 2   TSLRVLSLDLNQLTGNISS-SPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
            SL  L L  N L+G +++ + L   + ++ L +S N    P  +      + L+V    
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 61  CNEIFVESESSHSMTPKF-QLESVALSGSGIH---------------------ATFPKFL 98
            N I   +     ++    +L+ +A+SG+ I                      +T   FL
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 216
Query: 99  YNQHDLEYVDFSDSNLKGEFXXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTLYV 158
            +   L+++D S + L G+F                      GP  +P  P   L  L +
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV-GP--IPPLPLKSLQYLSL 273
Query: 159 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG--------------------- 197
           ++N F G IP  +      L  L+LS N F G++P   G                     
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 198 ----DMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSK--KNYLRKL 251
                M  L+ LDLS N+ +GE+PE L     +L  L LS N+  G +     +N    L
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 252 VSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG 311
             L+L  N FTG+IP +LSNCS L  L++S N L G IP+ LG+LS L D+ +  N L+G
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 312 PIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYGPLRYGTFFNRSSI 371
            IP E   +  L+ L L  N+                       L G +  G   N +++
Sbjct: 454 EIPQELMYVKTLETLILDFND-----------------------LTGEIPSG-LSNCTNL 489
Query: 372 VTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFG 431
             + LS N  +G IP WI RL  L  L L+NN+  G +P +L   + L  +DL+ N   G
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 432 QIPGCL--DNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYK 489
            IP  +   +  +  N       V   N  ++       + +E +         +S    
Sbjct: 550 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 490 GKPLNKMYG---------------VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVI 534
               +++YG               +D+S N L+G IP +I  +  +  LNL HN+++G I
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Query: 535 PVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKE 594
           P    +L  +  LD+S N L+G+IP  +  L  L    +++NNLSG IPE   QF TF  
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPP 728
Query: 595 DSYEGNPLLCGKPLPDCD 612
             +  NP LCG PLP CD
Sbjct: 729 AKFLNNPGLCGYPLPRCD 746

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  196 bits (498), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 192/678 (28%), Positives = 292/678 (43%), Gaps = 95/678 (14%)
Query: 2   TSLRVLSLDLNQLTGNISS-SPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
            SL  L L  N L+G +++ + L   + ++ L +S N    P  +      + L+V    
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 61  CNEIFVESESSHSMTPKF-QLESVALSGSGIH---------------------ATFPKFL 98
            N I   +     ++    +L+ +A+SG+ I                      +T   FL
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 219
Query: 99  YNQHDLEYVDFSDSNLKGEFXXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTLYV 158
            +   L+++D S + L G+F                      GP  +P  P   L  L +
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV-GP--IPPLPLKSLQYLSL 276
Query: 159 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG--------------------- 197
           ++N F G IP  +      L  L+LS N F G++P   G                     
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 198 ----DMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSK--KNYLRKL 251
                M  L+ LDLS N+ +GE+PE L     +L  L LS N+  G +     +N    L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 252 VSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG 311
             L+L  N FTG+IP +LSNCS L  L++S N L G IP+ LG+LS L D+ +  N L+G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 312 PIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYGPLRYGTFFNRSSI 371
            IP E   +  L+ L L  N+                       L G +  G   N +++
Sbjct: 457 EIPQELMYVKTLETLILDFND-----------------------LTGEIPSG-LSNCTNL 492
Query: 372 VTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFG 431
             + LS N  +G IP WI RL  L  L L+NN+  G +P +L   + L  +DL+ N   G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 432 QIPGCL--DNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYK 489
            IP  +   +  +  N       V   N  ++       + +E +         +S    
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 490 GKPLNKMYG---------------VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVI 534
               +++YG               +D+S N L+G IP +I  +  +  LNL HN+++G I
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 535 PVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKE 594
           P    +L  +  LD+S N L+G+IP  +  L  L    +++NNLSG IPE   QF TF  
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPP 731
Query: 595 DSYEGNPLLCGKPLPDCD 612
             +  NP LCG PLP CD
Sbjct: 732 AKFLNNPGLCGYPLPRCD 749

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 107/259 (41%), Gaps = 59/259 (22%)
Query: 379 NSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLD 438
           N+  G IP  I +LT L YL + + N+ G +P  L ++K L  +D S N + G +P  + 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145
Query: 439 NTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGK--PLNKM 496
                                         S++     I F    IS +        +K+
Sbjct: 146 ------------------------------SSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Query: 497 Y-GVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFS---------------- 539
           +  + +S N+LTG+IPP  + L  +  ++LS N L G   V F                 
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 540 -NLNQV------ESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTF 592
            +L +V        LD+  N + G +P  L +L  L   +V+ NNL G+IP+       F
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF 293
Query: 593 KEDSYEGNPLLCGKPLPDC 611
              +Y  N  LCG PLP C
Sbjct: 294 DVSAYANNKCLCGSPLPAC 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Query: 504 NKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLV 563
           N L G IPP I+KLT++  L ++H N++G IP   S +  + +LD SYN L+G +PP + 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 564 ELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLP---DCDVAAVPEAS 620
            L  L   +   N +SG IP+    F+            L GK  P   + ++A V  + 
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 621 NEEDGNSLIDMGS 633
           N  +G++ +  GS
Sbjct: 207 NMLEGDASVLFGS 219

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 174/441 (39%), Gaps = 61/441 (13%)
Query: 205 LDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSL---HLDANYF 261
           +DLS N +  E+ E       +L+FL + + +    L  + N  R L SL    LD N F
Sbjct: 35  VDLSLNSI-AELNETSFSRLQDLQFLKVEQQT--PGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 262 TGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGN----LSSLYDIMMASNHLQGPIPLEF 317
                 + +  ++LE L ++  NL G + +  GN    L+SL  +++  N+++   P  F
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 318 -CQLNYLQILDLSENNIXXXXXXXX---XXXXITQVHLSKNMLY-------GPLRYGTFF 366
              +    +LDL+ N +                T + LS   L        G  + G  F
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 367 NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSN 426
             +SI TLDLS N F        E +    +  +A   ++  +              LSN
Sbjct: 210 KNTSITTLDLSGNGFK-------ESMAKRFFDAIAGTKIQSLI--------------LSN 248
Query: 427 NNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISF 486
           +   G   G       H N  + D      N   +   ++G  T +  +S +F   +  F
Sbjct: 249 SYNMGSSFG-------HTNFKDPD------NFTFKGLEASGVKTCDLSKSKIFALLKSVF 295
Query: 487 SYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVES 546
           S+       +  + L+ N++          LT +  LNLS N L  +    F NL+++E 
Sbjct: 296 SH----FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351
Query: 547 LDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 606
           LD+SYN++        + L  L   ++  N L         + T+ ++     NP  C  
Sbjct: 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411
Query: 607 PLPDCDVAAVPEASNEEDGNS 627
           P  D     + + S +E G++
Sbjct: 412 PRIDYLSRWLNKNSQKEQGSA 432

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	699
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-136
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-108
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-72
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-70
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  418 bits (1076), Expect = e-136
 Identities = 172/617 (27%), Positives = 256/617 (41%), Gaps = 96/617 (15%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
            ++L+ L +  N+L+G+ S + +   T ++ L +S NQF  P    P      L+  S  
Sbjct: 222 CSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSLA 277

Query: 61  CNEI--FVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
            N+    +    S +      L  + LSG+  +   P F  +   LE +  S +N  GE 
Sbjct: 278 ENKFTGEIPDFLSGACD---TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334

Query: 119 LNWLLENNTNLNTLVLRNNSLSGPFRMPI-QPHWHLDTLYVSKNFFQGNIPLEIG-VYFP 176
               L     L  L L  N  SG     +      L TL +S N F G I   +      
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394

Query: 177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS 236
            L  L L  N F G IP ++ + + L +L LS N L+G IP  L  S   L  L L  N 
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNM 453

Query: 237 LLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNL 296
           L G++  +  Y++ L +L LD N  TGEIP  LSNC++L  + +S+N L G IP W+G L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 297 SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNML 356
            +L  + +++N   G IP E      L  LDL+ N  +G++P+                 
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA---------------- 557

Query: 357 YGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANN--NLEGEVPIQLC 414
                    F +S      ++ N  +G    +I+     +    A N    +G    QL 
Sbjct: 558 --------MFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605

Query: 415 RLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKE 474
           RL      ++++    G      DN                                   
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDN----------------------------------- 630

Query: 475 ESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVI 534
                                M  +D+S N L+G IP +I  +  +  LNL HN+++G I
Sbjct: 631 ------------------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672

Query: 535 PVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKE 594
           P    +L  +  LD+S N L+G+IP  +  L  L    +++NNLSG IPE   QF TF  
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPP 731

Query: 595 DSYEGNPLLCGKPLPDC 611
             +  NP LCG PLP C
Sbjct: 732 AKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  345 bits (888), Expect = e-108
 Identities = 158/621 (25%), Positives = 248/621 (39%), Gaps = 103/621 (16%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQF--QIPFSLEPFFNNSKLKVFS 58
           +T L  L L  + + G++S        S+  L LS N     +        + S LK  +
Sbjct: 76  LTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLN 132

Query: 59  GECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
                                + S  L   G            + LE +D S +++ G  
Sbjct: 133 ---------------------VSSNTLDFPG----KVSGGLKLNSLEVLDLSANSISGAN 167

Query: 119 LNWLLENN--TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFP 176
           +   + ++    L  L +  N +SG     +    +L+ L VS N F   IP  +G    
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLG-DCS 223

Query: 177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS 236
            L +L++S N  +G    +I     L+ L++S NQ  G IP        +L++L L+EN 
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENK 280

Query: 237 LLGQL-FSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA-WLG 294
             G++          L  L L  N+F G +P    +CS LE L +S NN  G +P   L 
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQL-NYLQILDLSENNISGSLPS---CSSHSSITQVH 350
            +  L  + ++ N   G +P     L   L  LDLS NN SG +      +  +++ +++
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 351 LSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVP 410
           L  N   G +   T  N S +V+L LS+N  SG IP  +  L+ LR L L  N LEGE+P
Sbjct: 401 LQNNGFTGKIP-PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459

Query: 411 IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSST 470
            +L  +K L  + L  N++ G+IP  L N                               
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSN------------------------------- 488

Query: 471 MEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNL 530
                                    +  + LS N+LTGEIP  I +L  +  L LS+N+ 
Sbjct: 489 ----------------------CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526

Query: 531 TGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFT 590
           +G IP    +   +  LD++ N  NG IP  + + +      +A N ++GK   +     
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDG 582

Query: 591 TFKEDSYEGNPLLCGKPLPDC 611
             KE    GN L       + 
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQ 603

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  249 bits (637), Expect = 2e-72
 Identities = 108/375 (28%), Positives = 167/375 (44%), Gaps = 21/375 (5%)

Query: 80  LESVALSGSGIHATF---PKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRN 136
           + S+ LS   ++  F      L +   LE +  S+S++ G       + + +L +L L  
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSR 109

Query: 137 NSLSG--PFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPS 194
           NSLSG       +     L  L VS N       +  G+    L  L+LS N  +G+   
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 195 SI---GDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKL 251
                     L+ L +S N+++G++       C NLEFL +S N+    +    +    L
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGD-CSAL 225

Query: 252 VSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG 311
             L +  N  +G+  +++S C+ L+ L +S N   G IP     L SL  + +A N   G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283

Query: 312 PIPLEFC-QLNYLQILDLSENNISGSLPSC-SSHSSITQVHLSKNMLYGPLRYGTFFNRS 369
            IP       + L  LDLS N+  G++P    S S +  + LS N   G L   T     
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 370 SIVTLDLSYNSFSGYIPYWIERLTY-LRYLILANNNLEGEVPIQLCR--LKQLRLIDLSN 426
            +  LDLS+N FSG +P  +  L+  L  L L++NN  G +   LC+     L+ + L N
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 427 NNIFGQIPGCLDNTS 441
           N   G+IP  L N S
Sbjct: 404 NGFTGKIPPTLSNCS 418

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  225 bits (577), Expect = 4e-64
 Identities = 100/408 (24%), Positives = 163/408 (39%), Gaps = 62/408 (15%)

Query: 198 DMNSLEALDLSHNQLT---GEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSL 254
             + + ++DLS   L      +   L  S   LE L LS + + G +   K     L SL
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLL-SLTGLESLFLSNSHINGSVSGFKC-SASLTSL 105

Query: 255 HLDANYFTGEIP--KSLSNCSHLEGLYMSDNNLYGNIPA-WLGNLSSLYDIMMASNHLQG 311
            L  N  +G +    SL +CS L+ L +S N L           L+SL  + +++N + G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 312 PIPLEFCQ---LNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNR 368
              + +        L+ L +S N ISG +       ++  + +S N     +      + 
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC-VNLEFLDVSSNNFSTGI--PFLGDC 222

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
           S++  LD+S N  SG     I   T L+ L +++N   G +P     LK L+ + L+ N 
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP--PLPLKSLQYLSLAENK 280

Query: 429 IFGQIPGCLDNT-------SLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTT 481
             G+IP  L           L  N         A      S                   
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGN-----HFYGAVPPFFGS------------------- 316

Query: 482 KEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ-ISKLTRIRALNLSHNNLTGVIPVTFSN 540
                       + +  + LS N  +GE+P   + K+  ++ L+LS N  +G +P + +N
Sbjct: 317 -----------CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365

Query: 541 L-NQVESLDISYNNLNGKIPPQL--VELNALAFFSVAHNNLSGKIPEW 585
           L   + +LD+S NN +G I P L     N L    + +N  +GKIP  
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  242 bits (619), Expect = 1e-70
 Identities = 110/594 (18%), Positives = 189/594 (31%), Gaps = 74/594 (12%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
            T+L  L L  N +   I ++P +   ++  L LS+N       L        L+     
Sbjct: 96  CTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLS 153

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
            N+I         +     L+ + LS + I    P   +    L  +  ++  L      
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213

Query: 121 WLLE--NNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL 178
            L     NT++  L L N+ LS                  S   F G         +  L
Sbjct: 214 KLCLELANTSIRNLSLSNSQLST----------------TSNTTFLGLK-------WTNL 250

Query: 179 VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238
             L+LS N+ N     S   +  LE   L +N +       L    FN+ +L L  +   
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRS--- 306

Query: 239 GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS 298
                            +           S      LE L M DN++ G        L +
Sbjct: 307 ------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354

Query: 299 LYDIMMASNHLQGPIP----LEFCQLNYLQILDLSENNISGSLPSC-SSHSSITQVHLSK 353
           L  + ++++                 + L IL+L++N IS       S    +  + L  
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 354 NMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEG--EVPI 411
           N +   L    +    +I  + LSYN +          +  L+ L+L    L+     P 
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 412 QLCRLKQLRLIDLSNNNIFGQIPGCLDN-TSLHNNGDNDDSLVPAFNHNVRSTYSAGSST 470
               L+ L ++DLSNNNI       L+    L         L     HN  +     ++ 
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLE-------ILD--LQHNNLARLWKHANP 525

Query: 471 MEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNL 530
                 +             K L+ ++ ++L  N            L  ++ ++L  NNL
Sbjct: 526 GGPIYFL-------------KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 531 TGVIPVTFSNLNQVESLDISYNNLNGKIPPQL-VELNALAFFSVAHNNLSGKIP 583
             +    F+N   ++SL++  N +              L    +  N       
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  231 bits (591), Expect = 1e-66
 Identities = 119/623 (19%), Positives = 196/623 (31%), Gaps = 76/623 (12%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
            S  V      +LT      P    T+I  L L++NQ +       F   S+L       
Sbjct: 4   VSHEVADCSHLKLT----QVPDDLPTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGF 58

Query: 62  NEI-FVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
           N I  +E E    +     L+ + L  + +     K      +L  +    ++++    N
Sbjct: 59  NTISKLEPELCQKLP---MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKN 114

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYF-PRLV 179
                  NL TL L +N LS           +L  L +S N  Q     E+ ++    L 
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 180 YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFN--LEFLVLSENSL 237
            L LS N      P     +  L  L L++ QL   + E L +   N  +  L LS + L
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 238 LGQLFS--KKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGN 295
                +         L  L L  N        S +    LE  ++  NN+       L  
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

Query: 296 LSSL---------YDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSH-SS 345
           L ++             ++   L       F  L  L+ L++ +N+I G   +  +   +
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354

Query: 346 ITQVHLSKNML-YGPLRYGTFFN--RSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILAN 402
           +  + LS +      L   TF +   S +  L+L+ N  S         L +L  L L  
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 403 NNLEGEVPIQ-LCRLKQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVPA 455
           N +  E+  Q    L+ +  I LS N                    L      +    P+
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 456 FNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIS 515
                                                L  +  +DLS N +       + 
Sbjct: 475 PFQP---------------------------------LRNLTILDLSNNNIANINDDMLE 501

Query: 516 KLTRIRALNLSHNNLT--------GVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNA 567
            L ++  L+L HNNL         G        L+ +  L++  N  +        +L  
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561

Query: 568 LAFFSVAHNNLSGKIPEWTAQFT 590
           L    +  NNL+           
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQV 584

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  202 bits (516), Expect = 3e-56
 Identities = 84/454 (18%), Positives = 150/454 (33%), Gaps = 25/454 (5%)

Query: 150 HWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSH 209
               +    S       +P ++      +  LNL+ N       ++    + L +LD+  
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 210 NQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSL 269
           N ++   PE        L+ L L  N L         +   L  LHL +N          
Sbjct: 59  NTISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 270 SNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG--PIPLEFCQLNYLQILD 327
               +L  L +S N L          L +L ++++++N +Q      L+    + L+ L+
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177

Query: 328 LSENNISGSLPSC-SSHSSITQVHLSKNMLYG--PLRYGTFFNRSSIVTLDLSYNSFSGY 384
           LS N I    P C  +   +  + L+   L      +       +SI  L LS +  S  
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237

Query: 385 IPYWIE--RLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDN-TS 441
                   + T L  L L+ NNL          L QL    L  NNI       L    +
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297

Query: 442 LH--NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEE---SIMFTTKEISFSYKGKPLNKM 496
           +   N   +      +     +    +       E             S  + G  L  +
Sbjct: 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG--LINL 355

Query: 497 YGVDLSCNKLTGEIPPQIS----KLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN 552
             + LS +  +       +      + +  LNL+ N ++ +    FS L  +E LD+  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 553 NLNGKIPPQ-LVELNALAFFSVAHNNLSGKIPEW 585
            +  ++  Q    L  +    +++N         
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  150 bits (382), Expect = 2e-38
 Identities = 82/411 (19%), Positives = 134/411 (32%), Gaps = 25/411 (6%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQ--IPFSLEPFFNNSKLK--- 55
            T+L +L L  N L   + +     L  +E  FL YN  Q     SL   FN   L    
Sbjct: 247 WTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 56  -VFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNL 114
                  +   +      S      LE + +  + I            +L+Y+  S+S  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 115 KGEFLN---WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEI 171
               L    ++   ++ L+ L L  N +S           HL+ L +  N     +  + 
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 172 GVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTG-EIPEHLAMSCFNLEFL 230
                 +  + LS N +     +S   + SL+ L L    L   +          NL  L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 231 VLSENSLLGQLFSKKNYLRKLVSLHLDANYFT--------GEIPKSLSNCSHLEGLYMSD 282
            LS N++          L KL  L L  N           G     L   SHL  L +  
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 283 NNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC-- 340
           N           +L  L  I +  N+L       F     L+ L+L +N I+        
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605

Query: 341 SSHSSITQVHLSKNMLYGPLRYGTFF----NRSSIVTLDLSYNSFSGYIPY 387
            +  ++T++ +  N          +F    N +     +LS +      P+
Sbjct: 606 PAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.5 bits (207), Expect = 9e-17
 Identities = 41/232 (17%), Positives = 73/232 (31%), Gaps = 26/232 (11%)

Query: 368 RSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNN 427
             S    D S+   +  +P  +   T +  L L +N L         R  QL  +D+  N
Sbjct: 3   TVSHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 428 NIFGQIPGCLDNTS------LHNNGDNDDSLVP-AFNHNVRSTY-SAGSSTMEKEESIMF 479
            I    P             L +N      L    F      T     S++++K ++  F
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHN--ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 480 TTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFS 539
                           +  +DLS N L+        +L  ++ L LS+N +  +      
Sbjct: 118 -----------VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166

Query: 540 NLNQV--ESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQF 589
                  + L++S N +    P     +  L    + +  L   + E     
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 3e-10
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 2/97 (2%)

Query: 500 DLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIP 559
            L  N +         K   +  L+LSHN L+     T   L  ++ L +S N +     
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

Query: 560 P--QLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKE 594
               +   ++L    ++ N +    P           
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  232 bits (593), Expect = 3e-67
 Identities = 81/601 (13%), Positives = 173/601 (28%), Gaps = 78/601 (12%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIP---FSLEPFFNNSKLKVF 57
              +  LSL+    +G +  + +  LT +E L L  +  ++    F  +    N   +  
Sbjct: 80  NGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 58  SGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGE 117
                                 L    ++      +  K          +    +N+   
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197

Query: 118 FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
            ++  +   T L    + N+         I   W  +    ++ +      L+       
Sbjct: 198 -VSKAVMRLTKLRQFYMGNSPFVAE---NICEAWENENSEYAQQY--KTEDLKWD-NLKD 250

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
           L  + +        +P+ +  +  ++ ++++ N+                      +   
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-----------------GEQLKD 293

Query: 238 LGQLFSKKNYLRKLVSLHLDANYF-TGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNL 296
             Q  +      K+  +++  N   T  +  SL     L  L    N L G +PA  G+ 
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSE 352

Query: 297 SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQ---VHLSK 353
             L  + +A N +             ++ L  + N +   +P+     S++    +  S 
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411

Query: 354 NMLYGPLRYG------TFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEG 407
           N +             T F   ++ +++LS N  S +        + L  + L  N L  
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

Query: 408 -------EVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNV 460
                  +          L  IDL  N +  ++      T+L      D       ++N 
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGID------LSYN- 523

Query: 461 RSTYSAGSSTMEKEESIMFTT--KEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLT 518
                             F+    +   S   K        D   N+   E P  I+   
Sbjct: 524 -----------------SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 519 RIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNL 578
            +  L +  N++  V      N+     LDI  N         +        + + ++  
Sbjct: 567 SLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

Query: 579 S 579
            
Sbjct: 624 Q 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  218 bits (557), Expect = 4e-62
 Identities = 66/542 (12%), Positives = 162/542 (29%), Gaps = 76/542 (14%)

Query: 79  QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNS 138
           ++  ++L G G     P  +    +LE +       K     +  +  +   +   +   
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 139 LSG-----PFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIP 193
                       P +    L    ++ +  Q +I     +   +   +    N+    + 
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT-LKDTQIGQLSNNI-TFVS 199

Query: 194 SSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVS 253
            ++  +  L    + ++    E        C   E               K + L+ L  
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 254 LHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL--------YGNIPAWLGNLSSLYDIMMA 305
           + +       ++P  L     ++ + ++ N               A       +  I + 
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 306 SNHLQ-GPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGT 364
            N+L+  P+     ++  L +L+   N + G LP+  S   +  ++L+ N +   +    
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPANF 372

Query: 365 FFNRSSIVTLDLSYNSFSGYIPYW-IERLTYLRYLILANNNLEG-------EVPIQLCRL 416
                 +  L  ++N        +  + ++ +  +  + N +          +     + 
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 417 KQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVPAFNHNVRSTYSAGSST 470
             +  I+LSNN I           S      L  N               +++    +  
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGN---------MLTEIPKNSLKDENEN 483

Query: 471 MEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI--SKLTRIRALNLSHN 528
            +                       +  +DL  NKLT  +      + L  +  ++LS+N
Sbjct: 484 FKN-------------------TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN 523

Query: 529 NLTGVIPVTFSNLNQVESLDI------SYNNLNGKIPPQLVELNALAFFSVAHNNLSGKI 582
           + +   P    N + ++   I        N    + P  +    +L    +  N++   +
Sbjct: 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-V 581

Query: 583 PE 584
            E
Sbjct: 582 NE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  188 bits (480), Expect = 1e-51
 Identities = 77/498 (15%), Positives = 152/498 (30%), Gaps = 60/498 (12%)

Query: 123 LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLV--- 179
           L +N  +  L L     SG     I     L+ L +  +  + N  L         +   
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 180 YLNLSRNDFNGSIPSSIGDMN--SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
                R  +  +        +   L    ++ +     I +           +    N++
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNI 195

Query: 238 LG--QLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGN 295
               +   +   L KL   ++  + F  E         + E         Y        N
Sbjct: 196 TFVSKAVMR---LTKLRQFYMGNSPFVAENICEAWENENSE-----YAQQYKTEDLKWDN 247

Query: 296 LSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG---------SLPSCSSHSSI 346
           L  L D+ + +      +P     L  +Q+++++ N             +L        I
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 347 TQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLE 406
             +++  N L       +      +  L+  YN   G +P        L  L LA N + 
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT 366

Query: 407 GEVPIQLC-RLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYS 465
             +P   C   +Q+  +  ++N +   IP   D  S+      D      F++N   +  
Sbjct: 367 E-IPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAID------FSYNEIGSVD 418

Query: 466 AGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNL 525
             +                           +  ++LS N+++       S  + + ++NL
Sbjct: 419 GKNFDPLDPTPFKGI--------------NVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 526 SHNNLTGV-------IPVTFSNLNQVESLDISYNNLNGKIPPQLV--ELNALAFFSVAHN 576
             N LT +           F N   + S+D+ +N L   +        L  L    +++N
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN 523

Query: 577 NLSGKIPEWTAQFTTFKE 594
           + S   P      +T K 
Sbjct: 524 SFSK-FPTQPLNSSTLKG 540

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  175 bits (446), Expect = 6e-47
 Identities = 78/575 (13%), Positives = 161/575 (28%), Gaps = 106/575 (18%)

Query: 1   MTSLRVLSLDLNQLTGNI-SSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSG 59
             S                   P    + + +  ++ +  Q            K      
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS-SRITLKDTQIGQ 190

Query: 60  ECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFL 119
             N I   S++   +T   +L    +  S   A      +   + EY        + +  
Sbjct: 191 LSNNITFVSKAVMRLT---KLRQFYMGNSPFVAENICEAWENENSEY------AQQYKTE 241

Query: 120 NWLLENNTNLNTLVLRNNSLSGPFRMPIQPHW-----HLDTLYVSKNFF--------QGN 166
           +   +N  +L  + + N            P +      +  + V+ N             
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKL-----PTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 167 IPLEIGVYFPRLVYLNLSRNDF-NGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCF 225
              +  V   ++  + +  N+     + +S+  M  L  L+  +NQL G++P     S  
Sbjct: 297 ALADAPV-GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FG-SEI 353

Query: 226 NLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLS--NCSHLEGLYMSDN 283
            L  L L+ N +     +   +  ++ +L    N     IP      + S +  +  S N
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN 412

Query: 284 NLYG-------NIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGS 336
            +          +        ++  I +++N +       F   + L  ++L  N ++  
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE- 471

Query: 337 LPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIP-YWIERLTYL 395
                         + KN L        F N   + ++DL +N  +     +    L YL
Sbjct: 472 --------------IPKNSLKDEN--ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515

Query: 396 RYLILANNNLEGEVPIQLCRLKQLRLIDLSN------NNIFGQIPGCLDN-TSLH--NNG 446
             + L+ N+     P Q      L+   + N      N    + P  +    SL     G
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 447 DNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKL 506
            ND   V                     E I                  +  +D+  N  
Sbjct: 575 SNDIRKVN--------------------EKI---------------TPNISVLDIKDNPN 599

Query: 507 TGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNL 541
                  +          L ++    +      ++
Sbjct: 600 ISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  128 bits (324), Expect = 3e-31
 Identities = 39/341 (11%), Positives = 94/341 (27%), Gaps = 70/341 (20%)

Query: 257 DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGP---- 312
           + + +  +   SL++   + GL +      G +P  +G L+ L  + + S+  +      
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 313 IPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIV 372
            P         +       +   +                                S ++
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF----------------------SDLI 162

Query: 373 TLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQ 432
              ++ +     I            +   +NN+   V   + RL +LR   + N+    +
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAE 221

Query: 433 IPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKP 492
                             +    +++                                  
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDN---------------------------------- 247

Query: 493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGV--------IPVTFSNLNQV 544
           L  +  V++       ++P  +  L  ++ +N++ N                      ++
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 545 ESLDISYNNL-NGKIPPQLVELNALAFFSVAHNNLSGKIPE 584
           + + I YNNL    +   L ++  L      +N L GK+P 
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 24/228 (10%), Positives = 60/228 (26%), Gaps = 13/228 (5%)

Query: 362 YGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRL 421
            G      +    +   + +       +     +  L L      G VP  + +L +L +
Sbjct: 50  QGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEV 109

Query: 422 IDLSNNNIFGQ----IPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESI 477
           + L ++          P  +                  +             +   ++ I
Sbjct: 110 LALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH---YQKTFVDYDPREDFSDLIKDCI 166

Query: 478 MFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVT 537
               ++ S     +   K   +    N +T  +   + +LT++R   + ++         
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICE 225

Query: 538 FSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEW 585
                     +  Y         +   L  L    V +     K+P +
Sbjct: 226 AWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 12/114 (10%), Positives = 33/114 (28%), Gaps = 6/114 (5%)

Query: 500 DLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNG--- 556
           +   +    +    ++   R+  L+L     +G +P     L ++E L +  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 557 -KIPPQLVELNALAFFSVAHNNLSGKIPEW--TAQFTTFKEDSYEGNPLLCGKP 607
              P  +    +         +      ++     F+   +D    +P      
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  212 bits (541), Expect = 3e-63
 Identities = 79/363 (21%), Positives = 128/363 (35%), Gaps = 84/363 (23%)

Query: 253 SLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYG--NIPAWLGNLSSLYDIMMAS-NHL 309
           +       + G +  + +    +  L +S  NL     IP+ L NL  L  + +   N+L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 310 QGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRS 369
            GPIP    +L  L  L ++  N+SG++P                               
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPD------------------------FLSQIK 125

Query: 370 SIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQL-RLIDLSNNN 428
           ++VTLD SYN+ SG +P  I  L  L  +    N + G +P       +L   + +S N 
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 429 IFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSY 488
           + G+IP    N +L                                         +  S 
Sbjct: 186 LTGKIPPTFANLNL---------------------------------------AFVDLSR 206

Query: 489 KGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLD 548
                N + G          +           + ++L+ N+L   +         +  LD
Sbjct: 207 -----NMLEG----------DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLD 250

Query: 549 ISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPL 608
           +  N + G +P  L +L  L   +V+ NNL G+IP+       F   +Y  N  LCG PL
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPL 309

Query: 609 PDC 611
           P C
Sbjct: 310 PAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  205 bits (524), Expect = 8e-61
 Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 37/301 (12%)

Query: 154 DTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS--IPSSIGDMNSLEALDLSH-N 210
            T       + G +         R+  L+LS  +      IPSS+ ++  L  L +   N
Sbjct: 29  PTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

Query: 211 QLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLS 270
            L G IP  +A     L +L ++  ++ G +    + ++ LV+L    N  +G +P S+S
Sbjct: 88  NLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146

Query: 271 NCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIM-MASNHLQGPIPLEFCQLNYLQILDLS 329
           +  +L G+    N + G IP   G+ S L+  M ++ N L G IP  F  LN L  +DLS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205

Query: 330 ENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWI 389
            N + G                             F +  +   + L+ NS +  +   +
Sbjct: 206 RNMLEGDASV------------------------LFGSDKNTQKIHLAKNSLAFDLGK-V 240

Query: 390 ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIP--GCLDN---TSLHN 444
                L  L L NN + G +P  L +LK L  +++S NN+ G+IP  G L     ++  N
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300

Query: 445 N 445
           N
Sbjct: 301 N 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  193 bits (493), Expect = 3e-56
 Identities = 76/359 (21%), Positives = 123/359 (34%), Gaps = 85/359 (23%)

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGE--IPEHLAMSCFNLEFLVLSENSLL 238
            +     + G +  +      +  LDLS   L     IP  LA +   L FL +      
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIG----- 84

Query: 239 GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS 298
                               N   G IP +++  + L  LY++  N+ G IP +L  + +
Sbjct: 85  ------------------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126

Query: 299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC--SSHSSITQVHLSKNML 356
           L  +  + N L G +P     L  L  +    N ISG++P    S     T + +S+N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

Query: 357 YGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL 416
            G +     F   ++  +DLS N   G            + + LA N+L  ++  ++   
Sbjct: 187 TGKIP--PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLS 243

Query: 417 KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEES 476
           K L  +DL NN I+G +P  L                                       
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQ------------------------------------- 266

Query: 477 IMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP 535
                           L  ++ +++S N L GEI PQ   L R      ++N      P
Sbjct: 267 ----------------LKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  179 bits (456), Expect = 4e-51
 Identities = 62/266 (23%), Positives = 114/266 (42%), Gaps = 19/266 (7%)

Query: 98  LYNQHDLEYVDFSDSNLKGEF-LNWLLENNTNLNTLVLRN-NSLSGPFRMPIQPHW---- 151
               + +  +D S  NL   + +   L N   LN L +   N+L GP    I P      
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLT 101

Query: 152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQ 211
            L  LY++     G IP  +      LV L+ S N  +G++P SI  + +L  +    N+
Sbjct: 102 QLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 212 LTGEIPEHLAMSCFNLEFLVLSENSLLGQL---FSKKNYLRKLVSLHLDANYFTGEIPKS 268
           ++G IP+           + +S N L G++   F+  N    L  + L  N   G+    
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----LAFVDLSRNMLEGDASVL 216

Query: 269 LSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDL 328
             +  + + ++++ N+L  ++   +G   +L  + + +N + G +P    QL +L  L++
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 329 SENNISGSLPSCSSHSSITQVHLSKN 354
           S NN+ G +P   +         + N
Sbjct: 276 SFNNLCGEIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  160 bits (407), Expect = 3e-44
 Identities = 73/345 (21%), Positives = 117/345 (33%), Gaps = 84/345 (24%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLI-HLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSG 59
              +  L L    L         + +L  +  L++               NN        
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI------------NN-------- 88

Query: 60  ECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFL 119
                                    L G       P  +     L Y+  + +N+ G   
Sbjct: 89  -------------------------LVGP-----IPPAIAKLTQLHYLYITHTNVSGAIP 118

Query: 120 NWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLV 179
           ++ L     L TL    N+LSG                         +P  I    P LV
Sbjct: 119 DF-LSQIKTLVTLDFSYNALSGT------------------------LPPSIS-SLPNLV 152

Query: 180 YLNLSRNDFNGSIPSSIGDMNSL-EALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238
            +    N  +G+IP S G  + L  ++ +S N+LTG+IP   A    NL F+ LS N L 
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLE 210

Query: 239 GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS 298
           G         +    +HL  N    ++   +    +L GL + +N +YG +P  L  L  
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNI--SGSLPSCS 341
           L+ + ++ N+L G IP     L    +   + N       LP+C+
Sbjct: 270 LHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPACT 313

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  206 bits (525), Expect = 5e-58
 Identities = 105/607 (17%), Positives = 198/607 (32%), Gaps = 97/607 (15%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFS 58
             S + L L  N L    S S       ++ L LS  + Q   ++E   + + S L    
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLI 82

Query: 59  GECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
                                     L+G+ I +           L+ +   ++NL    
Sbjct: 83  --------------------------LTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-L 115

Query: 119 LNWLLENNTNLNTLVLRNNSL-SGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYF-- 175
            N+ + +   L  L + +N + S           +L+ L +S N  Q     ++ V    
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 176 -PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
               + L+LS N  N   P +  ++  L  L L +N  +  + +        LE   L  
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 235 NSLLGQ---LFSKKNYLRKLVSLHLDAN------YFTGEIPKSLSNCSHLEGLYMSDNNL 285
                +       K+ L  L +L ++        Y+  +I    +  +++    +    +
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 286 YGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSS 345
                           + + +        L+   L  L        N      S     S
Sbjct: 295 ERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA----FSEVDLPS 348

Query: 346 ITQVHLSKNMLYG-PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNN 404
           +  + LS+N L        + F  +S+  LDLS+N     +      L  L +L   ++N
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407

Query: 405 LEGEVPIQ-LCRLKQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVPAFN 457
           L+          L+ L  +D+S+ +      G  +  S      +  N            
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN------------ 455

Query: 458 HNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKL 517
                             S         F+     L  +  +DLS  +L    P   + L
Sbjct: 456 ------------------SFQENFLPDIFT----ELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 518 TRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVEL-NALAFFSVAHN 576
           + ++ LN+SHNN   +    +  LN ++ LD S N++      +L    ++LAF ++  N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 577 NLSGKIP 583
           + +    
Sbjct: 554 DFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  195 bits (497), Expect = 4e-54
 Identities = 81/495 (16%), Positives = 157/495 (31%), Gaps = 41/495 (8%)

Query: 123 LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN 182
           +E   N+    +  N    P  +P         L +S N  +          FP L  L+
Sbjct: 4   VEVVPNITYQCMELNFYKIPDNLPF----STKNLDLSFNPLRHLGSYSFF-SFPELQVLD 58

Query: 183 LSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLF 242
           LSR +       +   ++ L  L L+ N +        +    +L+ LV  E +L     
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLEN 117

Query: 243 SKKNYLRKLVSLHLDANYFTG-EIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSL-- 299
               +L+ L  L++  N     ++P+  SN ++LE L +S N +       L  L  +  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 300 --YDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS----SHSSITQVHLSK 353
               + ++ N +    P  F ++  L  L L  N  S ++        +   + ++ L +
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 354 NMLYGPLRYGTFFNRSSIVTLDLSYNSFS------GYIPYWIERLTYLRYLILANNNLEG 407
               G L          +  L +     +        I      LT +    L +  +E 
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 408 EVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAF----------- 456
                       + ++L N          L +        N      +            
Sbjct: 297 VKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354

Query: 457 ---NHNVRSTYSAGSSTMEKEESIMFT-TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP 512
                + +   S         + +  +    I+ S     L ++  +D   + L      
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 513 QI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQ-LVELNALAF 570
            +   L  +  L++SH +        F+ L+ +E L ++ N+      P    EL  L F
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 571 FSVAHNNLSGKIPEW 585
             ++   L    P  
Sbjct: 475 LDLSQCQLEQLSPTA 489

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  184 bits (470), Expect = 2e-50
 Identities = 96/548 (17%), Positives = 185/548 (33%), Gaps = 43/548 (7%)

Query: 80  LESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSL 139
            +++ LS + +        ++  +L+ +D S   ++        ++ ++L+TL+L  N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPI 88

Query: 140 SGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG-SIPSSIGD 198
                        L  L   +          IG +   L  LN++ N      +P    +
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 199 MNSLEALDLSHNQLTGEIPEHLAMSC---FNLEFLVLSENSLLG---QLFSKKNYLRKLV 252
           + +LE LDLS N++       L +          L LS N +       F +      L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR----LH 203

Query: 253 SLHLDANYFTGEIPK-SLSNCSHLEGLYMSDN------NLYGNIPAWLGNLSSLYDIMMA 305
            L L  N+ +  + K  +   + LE   +         NL     + L  L +L      
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 306 SNHL---QGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRY 362
             +L      I   F  L  +    L    I       S +     + L           
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-SYNFGWQHLELVNCKF------ 316

Query: 363 GTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL--EGEVPIQLCRLKQLR 420
           G F          L++ S  G   +    L  L +L L+ N L  +G           L+
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 421 LIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFT 480
            +DLS N +       L    L         L    ++  + +  +   ++     +  +
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLE-------HLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 481 TKEISFSYKG--KPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVT 537
                 ++ G    L+ +  + ++ N       P I ++L  +  L+LS   L  + P  
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 538 FSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTF-KEDS 596
           F++L+ ++ L++S+NN           LN+L     + N++     +    F +     +
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549

Query: 597 YEGNPLLC 604
              N   C
Sbjct: 550 LTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  171 bits (435), Expect = 9e-46
 Identities = 66/432 (15%), Positives = 124/432 (28%), Gaps = 62/432 (14%)

Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
                 L+LS N        S      L+ LDLS  ++          S  +L  L+L+ 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTG 85

Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL-YGNIPAWL 293
           N +        + L  L  L              + +   L+ L ++ N +    +P + 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 294 GNLSSLYDIMMASNHLQGPIPLEFCQLNYLQI----LDLSENNISGSLPSCSSHSSITQV 349
            NL++L  + ++SN +Q     +   L+ + +    LDLS N ++   P       + ++
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 350 HLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGY------IPYWIERLTYLRYLILANN 403
            L  N     +        + +    L    F             +E L  L        
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 404 NLE---GEVPIQLCRLKQLRLIDLSNNNIFGQIPGC----LDNTSLHNNGDNDDSLVPAF 456
            L+    ++      L  +    L +  I             +  L N            
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG--QFPTLK 323

Query: 457 NHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISK 516
             +++                                       L+     G        
Sbjct: 324 LKSLKR--------------------------------------LTFTSNKGGNAFSEVD 345

Query: 517 LTRIRALNLSHNNLT--GVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA 574
           L  +  L+LS N L+  G    +      ++ LD+S+N +   +    + L  L      
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQ 404

Query: 575 HNNLSGKIPEWT 586
           H+NL        
Sbjct: 405 HSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  162 bits (412), Expect = 1e-42
 Identities = 89/431 (20%), Positives = 152/431 (35%), Gaps = 37/431 (8%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
             L  L+L  N  + N+  + +  L  +E   L   +F+   +LE F  ++      G C
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA----LEGLC 255

Query: 62  NEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNW 121
           N    E          F+L  +      I   F        ++         ++      
Sbjct: 256 NLTIEE----------FRLAYLDYYLDDIIDLFNCL----TNVSSFSLVSVTIER---VK 298

Query: 122 LLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL 181
               N     L L N         P      L  L  + N           V  P L +L
Sbjct: 299 DFSYNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFL 352

Query: 182 NLSRNDFN--GSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG 239
           +LSRN  +  G    S     SL+ LDLS N +       L +    LE L    ++L  
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE--QLEHLDFQHSNLKQ 410

Query: 240 QL-FSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNI-PAWLGNLS 297
              FS    LR L+ L +   +         +  S LE L M+ N+   N  P     L 
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 298 SLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSH-SSITQVHLSKNML 356
           +L  + ++   L+   P  F  L+ LQ+L++S NN            +S+  +  S N +
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 357 YGPLRYGTFFNRSSIVTLDLSYNSFSGYIP--YWIERLTYLRYLILANNNLEGEVPIQLC 414
               +       SS+  L+L+ N F+       +++ +   R L++    +E   P    
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK- 589

Query: 415 RLKQLRLIDLS 425
           +   +  ++++
Sbjct: 590 QGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  119 bits (300), Expect = 2e-28
 Identities = 60/318 (18%), Positives = 110/318 (34%), Gaps = 26/318 (8%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQF-QIPF---------------- 43
           +T++   SL    +          +    + L L   +F Q P                 
Sbjct: 281 LTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337

Query: 44  -SLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQH 102
            +     +   L+      N +  +   S S      L+ + LS +G+      FL  + 
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

Query: 103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNF 162
            LE++DF  SNLK      +  +  NL  L + +      F         L+ L ++ N 
Sbjct: 398 -LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 163 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAM 222
           FQ N   +I      L +L+LS+       P++   ++SL+ L++SHN            
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK- 515

Query: 223 SCFNLEFLVLSENSLLGQLFSK-KNYLRKLVSLHLDANYFTGEIPKS--LSNCSHLEGLY 279
              +L+ L  S N ++     + +++   L  L+L  N F         L        L 
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 575

Query: 280 MSDNNLYGNIPAWLGNLS 297
           +    +    P+    + 
Sbjct: 576 VEVERMECATPSDKQGMP 593

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  206 bits (525), Expect = 6e-58
 Identities = 100/593 (16%), Positives = 198/593 (33%), Gaps = 78/593 (13%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
            S   L    N L   I ++    L ++  L L+  Q                       
Sbjct: 33  NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY--------------------- 70

Query: 62  NEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNW 121
              ++  ++  S     +L+++ L+ + +       L     L+++ F  + +       
Sbjct: 71  ---WIHEDTFQSQH---RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI- 123

Query: 122 LLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGV-YFPRLVY 180
            L N   L +L L +N +S        P   L  L    N        ++        + 
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCF-NLEFLVLSENSL-- 237
           LNL+ ND    I     D    ++L+    Q    I + L  S   +L      +     
Sbjct: 184 LNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 238 LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS 297
           +     +      + S++L  +YF      +    S L+ L ++  +L   +P+ L  LS
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLS 301

Query: 298 SLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSH--SSITQVHLSKNM 355
           +L  +++++N  +    +       L  L +  N     L +       ++ ++ LS + 
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 356 LYG-PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEG-EVPIQL 413
           +           N S + +L+LSYN          +    L  L LA   L+  +     
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 414 CRLKQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVPAFNHNVRSTYSAG 467
             L  L++++LS++ +        D         L  N                      
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN---------------------- 459

Query: 468 SSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSH 527
                      F    I  +   + L ++  + LS   L+       + L  +  ++LSH
Sbjct: 460 ----------HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509

Query: 528 NNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG 580
           N LT       S+L  +  L+++ N+++  +P  L  L+     ++  N L  
Sbjct: 510 NRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  175 bits (447), Expect = 3e-47
 Identities = 76/474 (16%), Positives = 152/474 (32%), Gaps = 43/474 (9%)

Query: 127 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 186
            +   L    N L            +L  L +++                RL  L L+ N
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ-SQHRLDTLVLTAN 91

Query: 187 DFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKN 246
                  +++    +L+ L      ++      L  +   LE L L  N +      K  
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGF 150

Query: 247 YLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLY--MSDNNLYGNIPAWLGNLSSLYDIMM 304
              KL  L    N       + +S+      L   ++ N++   I     + +    +  
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNF 209

Query: 305 ASNHLQGPIP--LEFCQLNYLQILDLSENNISGSLPSC---SSHSSITQVHLSKNMLYGP 359
                   I   L+   +  L +    + +     P+        S+  ++L K+  +  
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN- 268

Query: 360 LRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQL 419
           +   TF   S +  LDL+    S  +P  +  L+ L+ L+L+ N  E    I       L
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 420 RLIDLSNNNIFGQI-PGCLDN-TSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESI 477
             + +  N    ++  GCL+N  +L         L  + +    S               
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLR-------ELDLSHDDIETSDCCNLQL-------- 372

Query: 478 MFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP-V 536
                        + L+ +  ++LS N+          +  ++  L+L+   L       
Sbjct: 373 -------------RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 537 TFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFT 590
            F NL+ ++ L++S++ L+         L AL   ++  N+      + T    
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  175 bits (446), Expect = 4e-47
 Identities = 82/440 (18%), Positives = 143/440 (32%), Gaps = 19/440 (4%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNNSKLKVFSG 59
             +L  L L  N ++ +I          ++ L    N    +          +     + 
Sbjct: 128 QKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 60  ECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQH--DLEYVDFSDSNLKGE 117
             N+I   +            +S+   G+       K L N     L    F D + +  
Sbjct: 187 NGNDI---AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 118 FLNWLLEN-NTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFP 176
                      ++ ++ L+ +               L  L ++       +P  +     
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLS 301

Query: 177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS 236
            L  L LS N F      S  +  SL  L +  N    E+      +  NL  L LS + 
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 237 LLGQLFSKK--NYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIP-AWL 293
           +            L  L SL+L  N       ++   C  LE L ++   L      +  
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 294 GNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC----SSHSSITQV 349
            NL  L  + ++ + L       F  L  LQ L+L  N+             +   +  +
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 350 HLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEV 409
            LS   L   +    F +   +  +DLS+N  +      +  L  + YL LA+N++   +
Sbjct: 482 VLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539

Query: 410 PIQLCRLKQLRLIDLSNNNI 429
           P  L  L Q R I+L  N +
Sbjct: 540 PSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  172 bits (437), Expect = 5e-46
 Identities = 102/601 (16%), Positives = 189/601 (31%), Gaps = 74/601 (12%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           + +L  L L   Q+   I          ++ L L+ N      +         LK     
Sbjct: 56  LINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFI 113

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
              I   S     +  +  LES+ L  + I +      +    L+ +DF ++ +      
Sbjct: 114 QTGI--SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSK 170

Query: 121 WLLENNTNLN--TLVLRNNSLS----GPFRMPIQPHWHLDTLYVSKNFFQGNIPLEI-GV 173
             + +       +L L  N ++    G F           +L          I   +   
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA-----VFQSLNFGGTQNLLVIFKGLKNS 225

Query: 174 YFPRLVYLNLSRNDFNGSIPSSIGDM--NSLEALDLSHNQLTGEIPEHLAMSCFNLEFLV 231
               L        D     P+    +   S+E+++L  +                L+ L 
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH-CFSGLQELD 284

Query: 232 LSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA 291
           L+   L  +L S    L  L  L L AN F      S SN   L  L +  N     +  
Sbjct: 285 LTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

Query: 292 W-LGNLSSLYDIMMASNHLQ--GPIPLEFCQLNYLQILDLSENNISGSLP-SCSSHSSIT 347
             L NL +L ++ ++ + ++      L+   L++LQ L+LS N        +      + 
Sbjct: 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403

Query: 348 QVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEG 407
            + L+   L        F N   +  L+LS++          + L  L++L L  N+   
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 408 EVPIQ---LCRLKQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVPAFNH 458
               +   L  L +L ++ LS  ++         +        L +N     S       
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN--RLTSSSIEALS 521

Query: 459 NVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLT 518
           +++  Y                                  ++L+ N ++  +P  +  L+
Sbjct: 522 HLKGIY----------------------------------LNLASNHISIILPSLLPILS 547

Query: 519 RIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNL 578
           + R +NL  N L      T SN+  +E    +   L             L    ++   L
Sbjct: 548 QQRTINLRQNPLDC----TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

Query: 579 S 579
           S
Sbjct: 604 S 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  154 bits (390), Expect = 8e-40
 Identities = 72/427 (16%), Positives = 127/427 (29%), Gaps = 57/427 (13%)

Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
                 L  S N       ++   + +L  LDL+  Q+   I E    S   L+ LVL+ 
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTA 90

Query: 235 NSLLG---QLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA 291
           N L+       S     + L  L       +      L N   LE LY+  N++      
Sbjct: 91  NPLIFMAETALSG---PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 292 WLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQI--LDLSENNISGSLPSCSSHSSITQV 349
                  L  +   +N +      +   L       L+L+ N+I+G  P     +    +
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

Query: 350 HLSKN-MLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERL--TYLRYLILANNNLE 406
           +      L    +        S+              P   E L    +  + L  +   
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 407 GEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVPAFNHNV 460
                       L+ +DL+  ++  ++P  L   S      L  N               
Sbjct: 268 NISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANK-------------- 312

Query: 461 RSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ-ISKLTR 519
                      E    I                  +  + +  N    E+    +  L  
Sbjct: 313 ----------FENLCQISA-----------SNFPSLTHLSIKGNTKRLELGTGCLENLEN 351

Query: 520 IRALNLSHNNLT--GVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNN 577
           +R L+LSH+++       +   NL+ ++SL++SYN           E   L    +A   
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 578 LSGKIPE 584
           L  K  +
Sbjct: 412 LKVKDAQ 418

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  153 bits (389), Expect = 1e-39
 Identities = 70/406 (17%), Positives = 134/406 (33%), Gaps = 64/406 (15%)

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG- 239
            N      N  IP ++   NS E L+ S N L        +    NL FL L+   +   
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQIYWI 72

Query: 240 --QLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS 297
               F       +L +L L AN        +LS    L+ L+     +       L N  
Sbjct: 73  HEDTFQS---QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 298 SLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLY 357
           +L  + + SNH+      +      L++LD   N I                +LSK  + 
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH---------------YLSKEDM- 173

Query: 358 GPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQL--CR 415
                 +   +++ ++L+L+ N  +G I          + L          +   L    
Sbjct: 174 ------SSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 416 LKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEE 475
           ++ L L    + +     P   +     +    +         +     S+ +       
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN------LQKHYFFNISSNTF------ 274

Query: 476 SIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP 535
                             + +  +DL+   L+ E+P  +  L+ ++ L LS N    +  
Sbjct: 275 ---------------HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ 318

Query: 536 VTFSNLNQVESLDISYNNLNGKIPPQLVE-LNALAFFSVAHNNLSG 580
           ++ SN   +  L I  N    ++    +E L  L    ++H+++  
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 4e-12
 Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 35/233 (15%)

Query: 373 TLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQ 432
           T +      +  IP  +        L  + N L         RL  L  +DL+   I+  
Sbjct: 16  TYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 433 IPGCLDN-TSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGK 491
                 +   L        +LV   N  +                      E + S    
Sbjct: 73  HEDTFQSQHRLD-------TLVLTANPLIFMA-------------------ETALS---- 102

Query: 492 PLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISY 551
               +  +      ++      +     + +L L  N+++ +         +++ LD   
Sbjct: 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162

Query: 552 NNLNGKIPPQLVELNALAFFSVA-HNNLSGKIPEWTAQFTTFKEDSYEGNPLL 603
           N ++      +  L      S+  + N    I         F+  ++ G   L
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  204 bits (521), Expect = 4e-56
 Identities = 78/610 (12%), Positives = 161/610 (26%), Gaps = 98/610 (16%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
              +  LSL      G +  + +  LT ++ L    +   +   L      +       +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 61  CNEIFVESESSHSMTPKFQ-LESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFL 119
                   +       +    + +  + +      P    ++  L+     +   +  F+
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 120 NWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLV 179
           +  ++  T L  +   N+  +             +           N  L        L 
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWS-NLKDLT 494

Query: 180 YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMS--------CFNLEFLV 231
            + L        +P  + D+  L++L+++ N+           +           ++   
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 232 LSENSLLG----QLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYG 287
           +  N+L          K   + KL  L    N     +  +      L  L +  N +  
Sbjct: 555 MGYNNLEEFPASASLQK---MVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQI-E 608

Query: 288 NIPAWLG-NLSSLYDIMMASNHLQG-PIPLEFCQLNYLQILDLSENNISG------SLPS 339
            IP         +  +  + N L+  P       +  +  +D S N I            
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 340 CSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFS-------GYIPYWIERL 392
                + + V LS N +        F   S I T+ LS N  +              +  
Sbjct: 669 DYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 393 TYLRYLILANNNLEGEVP--IQLCRLKQLRLIDLSNNNIFGQIPGCLDN-TSLHNNGDND 449
             L  + L  N L   +    +   L  L  +D+S N  F   P    N + L       
Sbjct: 728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKA----- 780

Query: 450 DSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE 509
                                                          +  D   N++  +
Sbjct: 781 -------------------------------------------FGIRHQRDAEGNRILRQ 797

Query: 510 IPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALA 569
            P  I+    +  L +  N++  V       L     LDI+ N         +       
Sbjct: 798 WPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL---YILDIADNPNISIDVTSVCPYIEAG 854

Query: 570 FFSVAHNNLS 579
            + + ++   
Sbjct: 855 MYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  204 bits (521), Expect = 4e-56
 Identities = 73/545 (13%), Positives = 168/545 (30%), Gaps = 80/545 (14%)

Query: 79  QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNS 138
           ++  ++L+G G     P  +    +L+ + F   +       +  E  T   +   ++  
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 139 LSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG------SI 192
                +M +     L+   + ++    N  +       +   ++L              I
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEM---KPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 193 PSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLV 252
             +I  +  L+ +  +++  T +          + E                 + L+ L 
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNLKDLT 494

Query: 253 SLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYG---------NIPAWLGNLSSLYDIM 303
            + L       ++P  L +   L+ L ++ N              +         +    
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 304 MASNHLQG-PIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRY 362
           M  N+L+  P      ++  L +LD   N +   L +  ++  +T + L  N +   +  
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEE-IPE 612

Query: 363 GTFFNRSSIVTLDLSYNSFSGYIP--YWIERLTYLRYLILANNNLEGE-----VPIQLCR 415
                   +  L  S+N     IP  +  + +  +  +  + N +  E       +   +
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 416 LKQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVPAFNHNVRSTYSAGSS 469
                 + LS N I           S      L NN                        
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL----------------------- 708

Query: 470 TMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI--SKLTRIRALNLSH 527
            M          K+ ++         +  +DL  NKLT  +      + L  +  +++S+
Sbjct: 709 -MTSIPENSLKPKDGNYKN----TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSY 762

Query: 528 NNLTGVIPVTFSNLNQVESLDISY------NNLNGKIPPQLVELNALAFFSVAHNNLSGK 581
           N  +   P    N +Q+++  I +      N +  + P  +    +L    +  N++  K
Sbjct: 763 NCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-K 820

Query: 582 IPEWT 586
           + E  
Sbjct: 821 VDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  178 bits (453), Expect = 4e-47
 Identities = 76/495 (15%), Positives = 147/495 (29%), Gaps = 97/495 (19%)

Query: 177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS 236
           R+  L+L+     G +P +IG +  L+ L    +  T              +     ++ 
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFGDEELTPDMSEERKHR 382

Query: 237 LLGQLFSK-KNYLRKLVSLHLDANYFTG----------------------------EIPK 267
           +         +Y ++L    L  +                                 I K
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 268 SLSNCSHLEGLYMSDNNL-------------------YGNIPAWLGNLSSLYDIMMASNH 308
           ++   + L+ +Y +++                     Y N      NL  L D+ + +  
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 309 LQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSI----------TQVHLSKNMLYG 358
               +P     L  LQ L+++ N    +    +  + +             ++  N L  
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 359 PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR-LK 417
                +      +  LD  +N     +         L  L L  N +E E+P   C    
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRH-LEA-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTD 619

Query: 418 QLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESI 477
           Q+  +  S+N +   IP   +  S++  G  D      F++N                 I
Sbjct: 620 QVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVD------FSYN----------------KI 656

Query: 478 MFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLT------ 531
               + IS S           V LS N++        +  + I  + LS+N +T      
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716

Query: 532 -GVIPVTFSNLNQVESLDISYNNLNGKIPPQLV--ELNALAFFSVAHNNLSGKIPEWTAQ 588
                  + N   + ++D+ +N L   +        L  L+   V++N  S   P     
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN 774

Query: 589 FTTFKEDSYEGNPLL 603
            +  K          
Sbjct: 775 SSQLKAFGIRHQRDA 789

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  165 bits (419), Expect = 8e-43
 Identities = 72/515 (13%), Positives = 137/515 (26%), Gaps = 114/515 (22%)

Query: 97  FLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL 156
            L N   +  +  +    KG  +   +   T L  L    +S +   R+        D  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 157 YVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFN-----GSIPSSIGDMNSLEALDLSHNQ 211
              K+  + +       Y  RL   +L ++  N       I            +    N+
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 212 LTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSN 271
           +T  I + +      L+ +  + +       +  N        + D          S SN
Sbjct: 437 ITF-ISKAI-QRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 272 CSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGP---------IPLEFCQLNY 322
              L  + + +      +P +L +L  L  + +A N              +  +      
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 323 LQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFS 382
           +QI  +  NN+     S                        +      +  LD  +N   
Sbjct: 550 IQIFYMGYNNLEEFPAS-----------------------ASLQKMVKLGLLDCVHNKVR 586

Query: 383 GYIPYWIERLTYLRYLILANNNLEGEVPIQLCR-LKQLRLIDLSNNNIFGQIPGCLDNTS 441
             +         L  L L  N +E E+P   C    Q+  +  S+N +   IP   +  S
Sbjct: 587 H-LEA-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKS 642

Query: 442 LHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDL 501
                                                              +  M  VD 
Sbjct: 643 ---------------------------------------------------VYVMGSVDF 651

Query: 502 SCNKLTGEIP-----PQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL-- 554
           S NK+  E           K      + LS+N +       F+  + + ++ +S N +  
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711

Query: 555 -----NGKIPPQLVELNALAFFSVAHNNLSGKIPE 584
                             L    +  N L+  + +
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSD 745

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.0 bits (244), Expect = 3e-21
 Identities = 29/228 (12%), Positives = 78/228 (34%), Gaps = 21/228 (9%)

Query: 373 TLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQ 432
             +   + +       ++    +  L LA    +G VP  + +L +L+++    ++    
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 433 IPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKP 492
                D     +  +     +      +   Y    +  +  +  +    E+    K   
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 493 LN-KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGV------------------ 533
           ++ K   +    N++T  I   I +LT+++ +  +++  T                    
Sbjct: 423 ISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

Query: 534 -IPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG 580
              +++SNL  +  +++       ++P  L +L  L   ++A N    
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.4 bits (232), Expect = 9e-20
 Identities = 36/299 (12%), Positives = 81/299 (27%), Gaps = 37/299 (12%)

Query: 320 LNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYN 379
               + LD           + + HS     +   +M           N   +  L L+  
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGV-DLDNNGRVTGLSLAGF 333

Query: 380 SFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIP----G 435
              G +P  I +LT L+ L    ++      +         + +   + I          
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393

Query: 436 CLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNK 495
                +L +   +  +  P      + +  +   T     +   T    +       L K
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR----LTK 449

Query: 496 MYGVDLSCNKLTG-------------------EIPPQISKLTRIRALNLSHNNLTGVIPV 536
           +  +  + +  T                          S L  +  + L +      +P 
Sbjct: 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509

Query: 537 TFSNLNQVESLDISYNNLNG---------KIPPQLVELNALAFFSVAHNNLSGKIPEWT 586
              +L +++SL+I+ N             ++         +  F + +NNL       +
Sbjct: 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  189 bits (482), Expect = 4e-52
 Identities = 93/601 (15%), Positives = 197/601 (32%), Gaps = 97/601 (16%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFSG 59
           +S + + L  N L   + S    + + ++ L LS  + +   ++E   +     L     
Sbjct: 32  SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLI- 86

Query: 60  ECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFL 119
                                    L+G+ I +  P        LE +   ++ L     
Sbjct: 87  -------------------------LTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLE 120

Query: 120 NWLLENNTNLNTLVLRNNSLSGPFRMPIQPHW-HLDTLYVSKNFFQGNIPLEIGVYF--- 175
           ++ +     L  L + +N +          +  +L  + +S N+ Q     ++       
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180

Query: 176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN 235
              + L++S N  +  I         L  L L  N  +  I +    +   L    L   
Sbjct: 181 QVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 236 SLLGQLFSKK------NYLRKLVSLHLDANY--FTGEIPKSLSNCSHLEGLYMSDNNLYG 287
               +   +         L  +        Y     +        +++  + ++  ++  
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-- 297

Query: 288 NIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSIT 347
                +        + +    L+         L +L+ L L+ N  S S     +  S++
Sbjct: 298 KYLEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGSISFKK-VALPSLS 353

Query: 348 QVHLSKNMLYGPLRYGTFFNR--SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405
            + LS+N L       ++ +   +S+  LDLS+N     +      L  L++L   ++ L
Sbjct: 354 YLDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL 411

Query: 406 EGEVPIQ-LCRLKQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVPAFNH 458
           +          L++L  +D+S  N      G     +      +  N   D++L   F +
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 459 NVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLT 518
                                                +  +DLS  +L          L 
Sbjct: 472 ----------------------------------TTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 519 RIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNL 578
           R++ LN+SHNNL  +    ++ L  + +LD S+N +            +LAFF++ +N++
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

Query: 579 S 579
           +
Sbjct: 558 A 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  165 bits (419), Expect = 1e-43
 Identities = 75/458 (16%), Positives = 140/458 (30%), Gaps = 36/458 (7%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKV---- 56
           +TSL  L     +L   + S P+  L ++++L +++N          F N + L      
Sbjct: 103 LTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161

Query: 57  ---FSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSN 113
                            +          S+ +S + I     +       L  +    + 
Sbjct: 162 YNYIQTITVNDLQFLRENP-----QVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNF 215

Query: 114 LKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLD--------TLYVSKNFFQG 165
                +   L+N   L+   L          + I     ++           ++      
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275

Query: 166 NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCF 225
           +  ++       +  ++L+           +      ++L +   QL       L     
Sbjct: 276 DDIVKFH-CLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLP---- 328

Query: 226 NLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSN--CSHLEGLYMSDN 283
            L+ L L+ N     +  KK  L  L  L L  N  +     S S+   + L  L +S N
Sbjct: 329 FLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 284 NLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLE-FCQLNYLQILDLSENNISGSLP-SCS 341
                + A    L  L  +    + L+       F  L  L  LD+S  N          
Sbjct: 387 GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 342 SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILA 401
             +S+  + ++ N          F N +++  LDLS            + L  L+ L ++
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 402 NNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDN 439
           +NNL         +L  L  +D S N I          
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  159 bits (403), Expect = 2e-41
 Identities = 89/497 (17%), Positives = 164/497 (32%), Gaps = 55/497 (11%)

Query: 104 LEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFF 163
           L+++D S   ++            +L+ L+L  N +             L+ L   +   
Sbjct: 58  LQWLDLSRCEIETIEDK-AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 164 QGNIPLEIGVYFPRLVYLNLSRNDFNG-SIPSSIGDMNSLEALDLSHNQLTGEIPEH--- 219
                  IG     L  LN++ N  +   +P+   ++ +L  +DLS+N +          
Sbjct: 117 ASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 220 LAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPK-SLSNCSHLEGL 278
           L  +      L +S N +   +  +     KL  L L  N+ +  I K  L N + L   
Sbjct: 176 LRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 279 YMSDNNLYGNI------PAWLGNLSSLY--DIMMASNHLQGPIPLEFCQLNYLQILDLSE 330
            +               P+ +  L  +   +  +   +      ++F  L  +  + L+ 
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 331 NNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIE 390
            +I   L     H     + + +  L    +     +   + +L L+ N  S  I +   
Sbjct: 295 VSIK-YLEDVPKHFKWQSLSIIRCQL----KQFPTLDLPFLKSLTLTMNKGS--ISFKKV 347

Query: 391 RLTYLRYLILANNNLE--GEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDN 448
            L  L YL L+ N L   G           LR +DLS N         +    L      
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ----- 402

Query: 449 DDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG 508
              L   F H+                ++   T+  +F      L K+  +D+S      
Sbjct: 403 --HLD--FQHS----------------TLKRVTEFSAFL----SLEKLLYLDISYTNTKI 438

Query: 509 EIPPQISKLTRIRALNLSHNNLTGVIPV-TFSNLNQVESLDISYNNLNGKIPPQLVELNA 567
           +       LT +  L ++ N+         F+N   +  LD+S   L          L+ 
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 568 LAFFSVAHNNLSGKIPE 584
           L   +++HNNL      
Sbjct: 499 LQLLNMSHNNLLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  156 bits (396), Expect = 2e-40
 Identities = 73/431 (16%), Positives = 140/431 (32%), Gaps = 40/431 (9%)

Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
                 ++LS N        S  + + L+ LDLS  ++     +       +L  L+L+ 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH-GLHHLSNLILTG 89

Query: 235 NSLLG---QLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYG-NIP 290
           N +       FS    L  L +L              +     L+ L ++ N ++   +P
Sbjct: 90  NPIQSFSPGSFSG---LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 291 AWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQI----LDLSENNISGSLPSCSSHSSI 346
           A+  NL++L  + ++ N++Q     +   L         LD+S N I            +
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKL 206

Query: 347 TQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI------PYWIERLTYLRYLIL 400
            ++ L  N     +      N + +    L    F          P  +E L  +     
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 401 --ANNNLEGEVPIQLCRLKQLRLIDLSNNNI--FGQIPGCLDNTSLHNNGDNDDSLVPAF 456
                N   +  ++   L  +  + L+  +I     +P      SL              
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 457 NHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT--GEIPPQI 514
              ++S     +                S S+K   L  +  +DLS N L+  G      
Sbjct: 327 LPFLKSLTLTMNK--------------GSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 515 SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQ-LVELNALAFFSV 573
                +R L+LS N    ++   F  L +++ LD  ++ L         + L  L +  +
Sbjct: 373 LGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Query: 574 AHNNLSGKIPE 584
           ++ N       
Sbjct: 432 SYTNTKIDFDG 442

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  154 bits (392), Expect = 4e-40
 Identities = 95/556 (17%), Positives = 173/556 (31%), Gaps = 77/556 (13%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
            + L+ L L   ++   I       L  +  L L+ N  Q  FS   F   + L+     
Sbjct: 55  FSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAV 112

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIH-ATFPKFLYNQHDLEYVDFSD---SNLKG 116
             ++   S  S  +     L+ + ++ + IH    P +  N  +L +VD S      +  
Sbjct: 113 ETKL--ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170

Query: 117 EFLNWLLENNTNLNTLVLRNNSLS----GPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIG 172
             L +L EN     +L +  N +       F+        L  L +  NF   NI     
Sbjct: 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-----KLHELTLRGNFNSSNIMKTCL 225

Query: 173 VYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEAL--------DLSHNQLTGEIPEHLAMSC 224
                L    L   +F       I + + +E L         L++     +         
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH-CL 284

Query: 225 FNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNN 284
            N+  + L+  S+  +         K  SL +            L     L+ L ++ N 
Sbjct: 285 ANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF---LKSLTLTMNK 339

Query: 285 LYGNIPAWLGNLSSLYDIMMASNHLQ--GPIPLEFCQLNYLQILDLSENNISGSLPSCSS 342
              +I      L SL  + ++ N L   G         N L+ LDLS N       +   
Sbjct: 340 G--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397

Query: 343 HSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILAN 402
              +  +    + L     +  F +   ++ LD+SY +           LT L  L +A 
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 403 NNLEGEVPIQ-LCRLKQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVPA 455
           N+ +             L  +DLS   +     G  D         + +N          
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN---------- 507

Query: 456 FNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIS 515
                               +++F      ++     L  +  +D S N++         
Sbjct: 508 --------------------NLLFLDSS-HYN----QLYSLSTLDCSFNRIETSKGILQH 542

Query: 516 KLTRIRALNLSHNNLT 531
               +   NL++N++ 
Sbjct: 543 FPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  149 bits (379), Expect = 3e-38
 Identities = 75/498 (15%), Positives = 145/498 (29%), Gaps = 55/498 (11%)

Query: 103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNF 162
             + +D S + LK    ++   N + L  L L    +            HL  L ++ N 
Sbjct: 33  STKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 163 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAM 222
            Q             L  L              IG + +L+ L+++HN +          
Sbjct: 92  IQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 223 SCFNLEFLVLSENSL----LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGL 278
           +  NL  + LS N +    +  L   +   +  +SL +  N     I         L  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHEL 209

Query: 279 YMSDNNLYGNIPAW-LGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQ--------ILDLS 329
            +  N    NI    L NL+ L+   +     +    LE  + + ++           L+
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 330 ENNISGSLPSC-SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYW 388
             N            ++++ + L+   +                +L +       +    
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSI---KYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 389 IERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDN 448
              L +L+ L L  N     +  +   L  L  +DLS N +         +   ++    
Sbjct: 327 ---LPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 449 DDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG 508
           D       + N                        I  S     L ++  +D   + L  
Sbjct: 382 D------LSFN----------------------GAIIMSANFMGLEELQHLDFQHSTLKR 413

Query: 509 EIPPQ-ISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQ-LVELN 566
                    L ++  L++S+ N        F  L  + +L ++ N+              
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473

Query: 567 ALAFFSVAHNNLSGKIPE 584
            L F  ++   L      
Sbjct: 474 NLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (321), Expect = 7e-31
 Identities = 63/404 (15%), Positives = 134/404 (33%), Gaps = 46/404 (11%)

Query: 190 GSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLR 249
           GS+   I  + ++        +L+ ++P+ +                             
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDI---------------------------PS 32

Query: 250 KLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHL 309
              ++ L  N        S SN S L+ L +S   +          L  L ++++  N +
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 310 QGPIPLEFCQLNYLQILDLSENNISGSLPSCSSH-SSITQVHLSKNMLYGPLRYGTFFNR 368
           Q   P  F  L  L+ L   E  ++           ++ +++++ N ++       F N 
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLR----YLILANNNLEGEVPIQLCRLKQLRLIDL 424
           +++V +DLSYN         ++ L         L ++ N ++  +  Q  +  +L  + L
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTL 211

Query: 425 SNNNIFGQIPGC----LDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFT 480
             N     I       L    +H     +            S           E  + +T
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 481 TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSN 540
                   K   L  +  + L+   +       + K  + ++L++    L     +    
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329

Query: 541 LNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPE 584
           L   +SL ++ N  +  I  + V L +L++  ++ N LS     
Sbjct: 330 L---KSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCC 368

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
                 KL+ ++P  I   T+   ++LS N L  +   +FSN ++++ LD+S   +    
Sbjct: 16  YQCMDQKLS-KVPDDIPSSTKN--IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 559 PPQLVELNALAFFSVAHNNLSGKIPEW 585
                 L+ L+   +  N +    P  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGS 99

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 8/137 (5%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           +TSL  L +  N    N  S+   + T++  L LS  Q +   S   F    +L++ +  
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMS 505

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLK----- 115
            N +     S ++      L ++  S + I  +     +    L + + +++++      
Sbjct: 506 HNNLLFLDSSHYNQLYS--LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563

Query: 116 GEFLNWLLENNTNLNTL 132
            +FL W+ E    L  +
Sbjct: 564 QKFLQWVKEQKQFLVNV 580

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  159 bits (405), Expect = 4e-41
 Identities = 125/722 (17%), Positives = 229/722 (31%), Gaps = 103/722 (14%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           + +   L L  N +   +++S    L  ++ L L      +    E F N   L++    
Sbjct: 23  LNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 61  CNEI-FVESESSHSMTPKFQLESVALSGSGIHATF--PKFLYNQHDLEYVDFSDSNLKGE 117
            ++I F+  ++   +     L  + L   G+        +  N   L  +D S + ++  
Sbjct: 82  SSKIYFLHPDAFQGLF---HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 118 FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQP--HWHLDTLYVSKNFFQGNIPLEIGVYF 175
           +L+       +L ++   +N +       ++P     L    ++ N     + ++ G   
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 176 -----PRLVYLNLSRNDFN------------GSIPSSIGDMNSLEALDLSHNQLTGEIPE 218
                  L  L++S N +              S   S+   + +       + +      
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 219 HLA-MSCFNLEFLVLSEN---SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSH 274
             A ++  ++  L LS     SL  ++F     L+ L  L+L  N       ++     +
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFET---LKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 275 LEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS 334
           L+ L +S N L     +    L  +  I +  NH+       F  L  LQ LDL +N ++
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

Query: 335 GSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSG-YIPYWIERLT 393
               +     SI  + LS N L   L             + LS N      I Y++ R+ 
Sbjct: 376 ----TIHFIPSIPDIFLSGNKLVT-LPKINLTAN----LIHLSENRLENLDILYFLLRVP 426

Query: 394 YLRYLILANNNLEGEVPIQLCR-LKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSL 452
           +L+ LIL  N        Q       L  + L  N +       L               
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG-------- 478

Query: 453 VPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP 512
                                                   L+ +  + L+ N L   +PP
Sbjct: 479 ----------------------------------------LSHLQVLYLNHNYLN-SLPP 497

Query: 513 QI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFF 571
            + S LT +R L+L+ N LT +          +E LDIS N L     P      +L+  
Sbjct: 498 GVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLA---PNPDVFVSLSVL 552

Query: 572 SVAHNNLSGKIP-EWTAQFTTFKEDSYEGNP--LLCGKPLPDCDVAAVPEASNEEDGNSL 628
            + HN    +        +      +  G P  + C  P     V ++   S E      
Sbjct: 553 DITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGV-SLFSLSTEGCDEEE 611

Query: 629 IDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYFIIDNLIPTRFY 688
           +     +  F    V + L ++ +L V  +    +                        Y
Sbjct: 612 VLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRLVFKDHPQGTEPDMYKY 671

Query: 689 HA 690
            A
Sbjct: 672 DA 673

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  154 bits (392), Expect = 2e-39
 Identities = 93/523 (17%), Positives = 162/523 (30%), Gaps = 54/523 (10%)

Query: 102 HDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKN 161
            D     +   NL       + +       L+L  N +             L  L +   
Sbjct: 4   FDGRIAFYRFCNL-----TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 162 FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLA 221
           +    I  E     P L  L+L  +      P +   +  L  L L    L+  + +   
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 222 MSCF-NLEFLVLSENSL----LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCS--H 274
                 L  L LS+N +    L   F K   L  L S+   +N         L       
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGK---LNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 275 LEGLYMSDNNLYGNIPAWLGNLSSLYDIM------------------MASNHLQGPIPLE 316
           L    ++ N+LY  +    G   + +  M                    SN +       
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235

Query: 317 FCQLNYLQILDLSENNISG---SLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVT 373
               +++       +NI     +  +  + SS+  + LS   ++  L    F     +  
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKV 294

Query: 374 LDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQI 433
           L+L+YN  +         L  L+ L L+ N L          L ++  IDL  N+I    
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 434 PGCLDNTS------LHNNGDNDDSLVPA-----FNHNVRSTYSAGSSTMEKEESIMFTTK 482
                         L +N       +P+      + N   T    + T           +
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 483 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNL-----TGVIPV 536
            +   Y    +  +  + L+ N+ +     Q  S+   +  L L  N L     T +   
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 537 TFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLS 579
            F  L+ ++ L +++N LN   P     L AL   S+  N L+
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  141 bits (358), Expect = 8e-36
 Identities = 90/576 (15%), Positives = 186/576 (32%), Gaps = 94/576 (16%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFSG 59
            S + L L  N L  ++ S        ++ L LS  + Q   ++E   + + S L     
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLIL 83

Query: 60  ECNEI-FVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
             N I  +   +   ++    L+ +    + + +     + +   L+ ++ + + ++   
Sbjct: 84  TGNPIQSLALGAFSGLS---SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 119 LNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL 178
           L     N TNL  L L +N +                  +     +    + +       
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQ----------------SIYCTDLRVLHQMPL-----LN 179

Query: 179 VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238
           + L+LS N  N  I         L  L L +N  +  + +        LE   L      
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 239 GQ---LFSKKNYLRKLVSLHLDANY------FTGEIPKSLSNCSHLEGLYMSDNNLYGNI 289
            +       K+ L  L +L ++         +  +I    +  +++    +    +    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 290 P-AWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQ 348
             ++      L  +                +L  L+ L  + N    +  S     S+  
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFP------TLKLKSLKRLTFTSNKGG-NAFSEVDLPSLEF 351

Query: 349 VHLSKNMLYG-PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEG 407
           + LS+N L        + F  +S+  LDLS+N     +      L  L +L   ++NL+ 
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 408 -EVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVPAFNHNV 460
                    L+ L  +D+S+ +      G  +  S      +  N               
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN--------------- 455

Query: 461 RSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTR 519
                          S         F+     L  +  +DLS  +L  ++ P   + L+ 
Sbjct: 456 ---------------SFQENFLPDIFT----ELRNLTFLDLSQCQLE-QLSPTAFNSLSS 495

Query: 520 IRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLN 555
           ++ LN++ N L  V    F  L  ++ + +  N  +
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  132 bits (334), Expect = 1e-32
 Identities = 83/442 (18%), Positives = 146/442 (33%), Gaps = 47/442 (10%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           + +L+ L++  N +          +LT++E L LS N+ Q            ++ + +  
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLS 181

Query: 61  ----CNEI-FVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQ------HDLEYVDF 109
                N + F++  +   +    +L  + L  +       K           H L   +F
Sbjct: 182 LDLSLNPMNFIQPGAFKEI----RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 110 SDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPL 169
            +     +F    LE   NL     R   L       I     L  +            +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 170 EIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF 229
           +   Y     +L L    F    P+    + SL+ L  + N+      E   +   +LEF
Sbjct: 298 KDFSYNFGWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEF 351

Query: 230 LVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNI 289
           L LS N L                       F G   +S    + L+ L +S N +   +
Sbjct: 352 LDLSRNGL----------------------SFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388

Query: 290 PAWLGNLSSLYDIMMASNHLQGPIPLE-FCQLNYLQILDLSENNISGSLPSCSSH-SSIT 347
            +    L  L  +    ++L+       F  L  L  LD+S  +   +     +  SS+ 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 348 QVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEG 407
            + ++ N          F    ++  LDLS        P     L+ L+ L +A+N L+ 
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508

Query: 408 EVPIQLCRLKQLRLIDLSNNNI 429
                  RL  L+ I L  N  
Sbjct: 509 VPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (326), Expect = 1e-31
 Identities = 78/434 (17%), Positives = 150/434 (34%), Gaps = 42/434 (9%)

Query: 167 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFN 226
           IP  +         L+LS N        S      L+ LDLS  ++   I +    S  +
Sbjct: 22  IPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 227 LEFLVLSENSLLG---QLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDN 283
           L  L+L+ N +       FS    L  L  L              + +   L+ L ++ N
Sbjct: 78  LSTLILTGNPIQSLALGAFSG---LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 284 NL-YGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQI----LDLSENNISGSLP 338
            +    +P +  NL++L  + ++SN +Q     +   L+ + +    LDLS N ++   P
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 339 SCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI------PYWIERL 392
                  + ++ L  N     +        + +    L    F             +E L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 393 TYLRYLILANNNLEG---EVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDND 449
             L         L+    ++      L  +    L +  I  ++     N    +    +
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNFGWQHLELVN 313

Query: 450 DSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT-- 507
                     ++S            + + FT+ +   ++    L  +  +DLS N L+  
Sbjct: 314 CKFGQFPTLKLKSL-----------KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 508 GEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQ--LVEL 565
           G         T ++ L+LS N +   +   F  L Q+E LD  ++NL  ++      + L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSL 420

Query: 566 NALAFFSVAHNNLS 579
             L +  ++H +  
Sbjct: 421 RNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (321), Expect = 4e-31
 Identities = 82/463 (17%), Positives = 151/463 (32%), Gaps = 43/463 (9%)

Query: 152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQ 211
               L +S N  + ++       FP L  L+LSR +       +   ++ L  L L+ N 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 212 LTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFT-GEIPKSLS 270
           +   +         +L+ LV  E +L         +L+ L  L++  N     ++P+  S
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 271 NCSHLEGLYMSDNNLYGNIPAWLGNLSSL----YDIMMASNHLQGPIPLEFCQLNYLQIL 326
           N ++LE L +S N +       L  L  +      + ++ N +   I     +   L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKL 205

Query: 327 DLSENNISGSLPS--CSSHSSITQVHLSKNMLYG-----PLRYGTFFN--RSSIVTLDLS 377
            L  N  S ++        + +    L                         +I    L+
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 378 YNSFSG-YIPYWIERLTYLRYLILANNNLEGEVPIQ-LCRLKQLRLIDLSNNNIFGQIPG 435
           Y  +    I      LT +    L +  +E           + L L++            
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 436 CLDNTSL-HNNGDNDDSLVPAFN-------HNVRSTYSAGSSTMEKEESIMFTTKEISFS 487
            L   +   N G N  S V   +        N  S     S +     S+    K +  S
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL----KYLDLS 381

Query: 488 YKG--------KPLNKMYGVDLSCNKLTGEIPPQI--SKLTRIRALNLSHNNLTGVIPVT 537
           + G          L ++  +D   + L  ++        L  +  L++SH +        
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 538 FSNLNQVESLDISYNNLNGKIPPQ-LVELNALAFFSVAHNNLS 579
           F+ L+ +E L ++ N+      P    EL  L F  ++   L 
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  125 bits (316), Expect = 2e-30
 Identities = 81/448 (18%), Positives = 151/448 (33%), Gaps = 35/448 (7%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
              L+VL L   ++   I       L+ +  L L+ N  Q   +L  F   S L+     
Sbjct: 51  FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAV 108

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHA-TFPKFLYNQHDLEYVDFSD---SNLKG 116
              +   S  +  +     L+ + ++ + I +   P++  N  +LE++D S     ++  
Sbjct: 109 ETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 117 EFLNWLLENNTNLNTLVLRNNSLS----GPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIG 172
             L  L +      +L L  N ++    G F+        L  L +  NF   N+     
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-----RLHKLTLRNNFDSLNVMKTCI 221

Query: 173 VYFPRLVYLNLSRNDFNGSIPSSIGDMN--------SLEALDLSHNQLTGEIPEHLAMSC 224
                L    L   +F         D +        ++E   L++     +    L    
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 225 FNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNN 284
            N+    L   ++        +Y      L L    F       L +   L+ L  + N 
Sbjct: 282 TNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNK 336

Query: 285 LYGNIPAWLGNLSSLYDIMMASNHLQ--GPIPLEFCQLNYLQILDLSENNISGSLPSCSS 342
             GN  +   +L SL  + ++ N L   G           L+ LDLS N +     +   
Sbjct: 337 G-GNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

Query: 343 HSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILAN 402
              +  +    + L     +  F +  +++ LD+S+             L+ L  L +A 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 403 NNLEGEVPIQ-LCRLKQLRLIDLSNNNI 429
           N+ +          L+ L  +DLS   +
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  103 bits (259), Expect = 2e-23
 Identities = 73/351 (20%), Positives = 118/351 (33%), Gaps = 27/351 (7%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQ-------IPFSLEPFFNNSKL 54
             L  L+L  N  + N+  + +  L  +E   L   +F+          S      N  +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 55  KVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFP-KFLYNQHDLEYVDFSDSN 113
           + F     + +   +          + S +L    I       + +    LE V+     
Sbjct: 260 EEFRLAYLDYY-LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 114 LKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQG-NIPLEIG 172
                L        +L  L   +N     F         L+ L +S+N         +  
Sbjct: 319 FPTLKLK-------SLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 173 VYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVL 232
                L YL+LS N    ++ S+   +  LE LD  H+ L       + +S  NL +L +
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 233 SEN---SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPK-SLSNCSHLEGLYMSDNNLYGN 288
           S          +F+    L  L  L +  N F         +   +L  L +S   L   
Sbjct: 429 SHTHTRVAFNGIFNG---LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 289 IPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPS 339
            P    +LSSL  + MASN L+      F +L  LQ + L  N    S P 
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  138 bits (348), Expect = 6e-35
 Identities = 76/426 (17%), Positives = 146/426 (34%), Gaps = 35/426 (8%)

Query: 170 EIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF 229
           EI     R     ++ +    ++ S      +++ LDLS N L+      LA     LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLEL 62

Query: 230 LVLSENSL--LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYG 287
           L LS N L     L S    L  L +L L+ NY        L     +E L+ ++NN+  
Sbjct: 63  LNLSSNVLYETLDLES----LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 288 NIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHS--S 345
              +      ++Y   +A+N +     L+    + +Q LDL  N I     +  + S  +
Sbjct: 114 VSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405
           +  ++L  N +Y  ++    F  + + TLDLS N  + ++    +    + ++ L NN L
Sbjct: 171 LEHLNLQYNFIYD-VKGQVVF--AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 406 EGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYS 465
              +   L   + L   DL  N        C       +      ++       +     
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGF-----HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 466 AGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG----EIPPQISKLTRIR 521
              +         +  +++   +  + L  +   + +     G     +  +     R R
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADR-LIALKRKEHALLSGQGSETERLECERENQARQR 339

Query: 522 ALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIP---PQLVELNALAFFSVAHNNL 578
            ++        VI           +L+     L+ ++        EL+     +V    L
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL 399

Query: 579 SGKIPE 584
                E
Sbjct: 400 QHATEE 405

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  122 bits (308), Expect = 9e-30
 Identities = 71/492 (14%), Positives = 157/492 (31%), Gaps = 34/492 (6%)

Query: 48  FFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYV 107
             N ++ K+     + +  +   +      + ++ + LSG+ +       L     LE +
Sbjct: 6   KQNGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 108 DFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNI 167
           + S + L        LE+ + L TL L NN +       +     ++TL+ + N     +
Sbjct: 64  NLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RV 114

Query: 168 PLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNL 227
                        + L+ N          G  + ++ LDL  N++       LA S   L
Sbjct: 115 SCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 228 EFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYG 287
           E L L  N +       +    KL +L L +N     +     + + +  + + +N L  
Sbjct: 172 EHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-V 227

Query: 288 NIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG-SLPSCSSHSSI 346
            I   L    +L    +  N        +F      ++  +++  +   +  +    +  
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 347 TQVHLSKNML----YGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILAN 402
           T  H                     R     L    +     +    E     R +    
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER-LECERENQARQREIDALK 345

Query: 403 NNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRS 462
                 +     R +    ++     +  Q+           + + D +L  A       
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN-----GRRAHAELDGTLQQAVGQIELQ 400

Query: 463 TYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIR- 521
             +   S ++   +I+   +E+    +    N +   D+  +K T ++  + ++L ++  
Sbjct: 401 HATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET-QLAEENARLKKLNG 459

Query: 522 --ALNLSHNNLT 531
              L L+  N T
Sbjct: 460 EADLALASANAT 471

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (293), Expect = 7e-28
 Identities = 59/452 (13%), Positives = 134/452 (29%), Gaps = 43/452 (9%)

Query: 153 LDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQL 212
                V+ +  +      +      +  L+LS N  +    + +     LE L+LS N L
Sbjct: 12  YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 213 TGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNC 272
             E  +  ++S   L  L L+ N +      +      + +LH   N  +          
Sbjct: 71  Y-ETLDLESLS--TLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQG- 121

Query: 273 SHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG-PIPLEFCQLNYLQILDLSEN 331
              + +Y+++N +        G  S +  + +  N +            + L+ L+L  N
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 332 NISGSLPSCSSHSSITQVHLSKNMLYG-PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIE 390
            I   +      + +  + LS N L         F + + +  + L  N     I   + 
Sbjct: 180 FIY-DVKGQVVFAKLKTLDLSSNKLAFMG---PEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 391 RLTYLRYLILANNNLE-GEVPIQLCRLKQLRLIDL-SNNNIFGQIPGCLDNTSLHNNGDN 448
               L +  L  N    G +     + ++++ +   +   + GQ        +L + G  
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 449 --DDSLVPAFNHNVRSTYSAGS---------STMEKEESIMFTTKEISFSY--------- 488
             +D   P  +  +       +           +E E       +EI             
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQ 354

Query: 489 KGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLD 548
                     ++     L  ++         +             +       + ++ L 
Sbjct: 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLLR 413

Query: 549 ISYNNLNGK-IPPQLVELNALAFFSVAHNNLS 579
                     +  Q V+ NA+  + +  +  +
Sbjct: 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (262), Expect = 6e-24
 Identities = 65/440 (14%), Positives = 132/440 (30%), Gaps = 39/440 (8%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
             +++ L L  N L+  IS++ L   T +E L LS N            + S L+     
Sbjct: 33  AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLY---ETLDLESLSTLRTLDLN 88

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
            N +         +     +E++  + + I              + +  +++ +     +
Sbjct: 89  NNYV-------QELLVGPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKIT-MLRD 137

Query: 121 WLLENNTNLNTLVLRNNSLSG-PFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLV 179
                 + +  L L+ N +    F         L+ L +  NF      ++  V F +L 
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---VKGQVVFAKLK 194

Query: 180 YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL-- 237
            L+LS N     +         +  + L +N+L   I + L     NLE   L  N    
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFHC 251

Query: 238 --LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGN 295
             L   FSK   ++      +          ++   C+     +            +   
Sbjct: 252 GTLRDFFSKNQRVQ-----TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

Query: 296 LSSLYDIMMASNHLQG----PIPLEFCQLNYLQILDLSENNISGSLP-SCSSHSSITQVH 350
           L +L     A    QG     +  E       + +D  +      +        +   + 
Sbjct: 307 LIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLE 366

Query: 351 LSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLI-LANNNLEGEV 409
             K  L   +        + +             + +  E  + L+ L  +     E  V
Sbjct: 367 QKKKALDEQVS-NGRRAHAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYEEMYV 424

Query: 410 PIQLCRLKQLRLIDLSNNNI 429
             Q  +   +R  D+  +  
Sbjct: 425 EQQSVQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  103 bits (259), Expect = 2e-23
 Identities = 51/307 (16%), Positives = 104/307 (33%), Gaps = 52/307 (16%)

Query: 265 IPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQ 324
           I +   N +  +   ++D++L   + +   +  ++ ++ ++ N L      +      L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 325 ILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGY 384
           +L+LS N +        S S++  + L+ N +             SI TL  + N+ S  
Sbjct: 62  LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS-R 113

Query: 385 IPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI----FGQIPGCLDN- 439
           +     R    + + LANN +     +      +++ +DL  N I    F ++    D  
Sbjct: 114 VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 440 TSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGV 499
             L+              +N                        I          K+  +
Sbjct: 172 EHLN------------LQYN-----------------------FIYDVKGQVVFAKLKTL 196

Query: 500 DLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIP 559
           DLS NKL   + P+      +  ++L +N L  +I         +E  D+  N  +    
Sbjct: 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 560 PQLVELN 566
                 N
Sbjct: 255 RDFFSKN 261

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (347), Expect = 8e-35
 Identities = 85/449 (18%), Positives = 160/449 (35%), Gaps = 70/449 (15%)

Query: 123 LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN 182
                     VL   +++    +       + TL   +   +    +E   Y   L  +N
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGVE---YLNNLTQIN 74

Query: 183 LSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIP-EHLAMSCFNLEFLVLSENSLLGQL 241
            S N      P  + ++  L  + +++NQ+    P  +L     NL  L L  N +    
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT----NLTGLTLFNNQITD-- 126

Query: 242 FSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYD 301
                 L  L  L L +N  +     +LS  + L+ L    N +    P  L NL++L  
Sbjct: 127 IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLER 181

Query: 302 IMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLR 361
           + ++SN +     L   +L  L+ L  + N IS  +      +++ ++ L+ N L     
Sbjct: 182 LDISSNKVSDISVLA--KLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKDI-- 236

Query: 362 YGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRL 421
            GT  + +++  LDL+ N  S   P  +  LT L  L L  N +    P+    L  L  
Sbjct: 237 -GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTN 291

Query: 422 IDLSNNNIFGQIPGCLDNTSLH--NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMF 479
           ++L+ N +   I    +  +L       N+ S +   +                      
Sbjct: 292 LELNENQLED-ISPISNLKNLTYLTLYFNNISDISPVSS--------------------- 329

Query: 480 TTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFS 539
                        L K+  +    NK++      ++ LT I  L+  HN ++ + P   +
Sbjct: 330 -------------LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LA 372

Query: 540 NLNQVESLDISYNNLNGKIPPQLVELNAL 568
           NL ++  L ++              ++  
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  133 bits (338), Expect = 1e-33
 Identities = 81/452 (17%), Positives = 159/452 (35%), Gaps = 64/452 (14%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           +       L    +T  +       L  +  L       +   S++     + L   +  
Sbjct: 23  LAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS 76

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
            N++                       + I       L N   L  +  +++ +      
Sbjct: 77  NNQL-----------------------TDI-----TPLKNLTKLVDILMNNNQIADITP- 107

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
             L N TNL  L L NN ++     P++   +L+ L +S N       L        L  
Sbjct: 108 --LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALS---GLTSLQQ 160

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
           L+        +    + ++ +LE LD+S N+++      LA    NLE L+ + N +   
Sbjct: 161 LSFGNQV---TDLKPLANLTTLERLDISSNKVSD--ISVLA-KLTNLESLIATNNQISD- 213

Query: 241 LFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLY 300
             +    L  L  L L+ N        +L++ ++L  L +++N +    P  L  L+ L 
Sbjct: 214 -ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268

Query: 301 DIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPL 360
           ++ + +N +    PL    L  L  L+L+EN +   +   S+  ++T + L  N +    
Sbjct: 269 ELKLGANQISNISPLA--GLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNNISDI- 324

Query: 361 RYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLR 420
                 + + +  L    N  S      +  LT + +L   +N +    P+    L ++ 
Sbjct: 325 --SPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLA--NLTRIT 378

Query: 421 LIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSL 452
            + L++            N S+ N   N    
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  131 bits (332), Expect = 6e-33
 Identities = 83/457 (18%), Positives = 158/457 (34%), Gaps = 70/457 (15%)

Query: 130 NTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFN 189
           +  + ++  ++  F              + K      +         ++  L   R    
Sbjct: 5   SATITQDTPINQIF--TDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRL--G 57

Query: 190 GSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLR 249
                 +  +N+L  ++ S+NQLT   P  L  +   L  ++++ N +     +    L 
Sbjct: 58  IKSIDGVEYLNNLTQINFSNNQLTDITP--LK-NLTKLVDILMNNNQIAD--ITPLANLT 112

Query: 250 KLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHL 309
            L  L L  N  T   P  L N ++L  L +S N +  +I A L  L+SL  +    N +
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISA-LSGLTSLQQLSF-GNQV 167

Query: 310 QGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRS 369
               PL    L  L+ LD+S N +S  +   +  +++  +  + N +            +
Sbjct: 168 TDLKPLA--NLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISD---ITPLGILT 221

Query: 370 SIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
           ++  L L+ N         +  LT L  L LANN +    P+    L +L  + L  N I
Sbjct: 222 NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQI 277

Query: 430 FGQIPGCLDNTSLH--NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFS 487
              I      T+L      +N    +   ++                             
Sbjct: 278 SN-ISPLAGLTALTNLELNENQLEDISPISN----------------------------- 307

Query: 488 YKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESL 547
                L  +  + L  N ++   P  +S LT+++ L   +N ++ V     +NL  +  L
Sbjct: 308 -----LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWL 358

Query: 548 DISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPE 584
              +N ++   P  L  L  +    +     +     
Sbjct: 359 SAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  126 bits (319), Expect = 3e-31
 Identities = 98/560 (17%), Positives = 183/560 (32%), Gaps = 105/560 (18%)

Query: 5   RVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEI 64
            + S  + Q T          L    +  L               +  ++     +   I
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVT---DTVSQTDLDQVTTLQADRLGI 58

Query: 65  FVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKG-EFLNWLL 123
                                            +   ++L  ++FS++ L     L  L 
Sbjct: 59  ----------------------------KSIDGVEYLNNLTQINFSNNQLTDITPLKNL- 89

Query: 124 ENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNL 183
              T L  +++ NN ++     P+    +L  L +  N      PL+       L  L L
Sbjct: 90  ---TKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLEL 141

Query: 184 SRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFS 243
           S N  +    S++  + SL+ L   +     +   +L      LE L +S N +     S
Sbjct: 142 SSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLT----TLERLDISSNKVSD--IS 193

Query: 244 KKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIM 303
               L  L SL    N  +   P  L   ++L+ L ++ N L  +I   L +L++L D+ 
Sbjct: 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-KDIGT-LASLTNLTDLD 249

Query: 304 MASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYG 363
           +A+N +    PL    L  L  L L  N IS ++   +  +++T + L++N L       
Sbjct: 250 LANNQISNLAPLS--GLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQLEDIS--- 303

Query: 364 TFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLID 423
              N  ++  L L +N+ S   P  +  LT L+ L   NN +       L  L  +  + 
Sbjct: 304 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLS 359

Query: 424 LSNNNIFGQIP----GCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMF 479
             +N I    P      +    L++                                  +
Sbjct: 360 AGHNQISDLTPLANLTRITQLGLNDQ--------------------------------AW 387

Query: 480 TTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFS 539
           T   +++       N +  V      L    P  IS        +++ N  +    V++ 
Sbjct: 388 TNAPVNYKANVSIPNTVKNVT---GALI--APATISDGGSYTEPDITWNLPSYTNEVSY- 441

Query: 540 NLNQVESLDISYNNLNGKIP 559
             +Q  ++       +G + 
Sbjct: 442 TFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  105 bits (265), Expect = 3e-24
 Identities = 71/379 (18%), Positives = 127/379 (33%), Gaps = 52/379 (13%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           +T+L  L+L  NQ+T      PL +LT++ RL LS N       +      + L+  S  
Sbjct: 111 LTNLTGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFG 164

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
                ++  ++ +      LE + +S + +  +    L    +LE +  +++ +      
Sbjct: 165 NQVTDLKPLANLT-----TLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP- 216

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
             L   TNL+ L L  N L       +    +L  L ++ N      PL       +L  
Sbjct: 217 --LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTE 269

Query: 181 LNLSRNDFNGSIP--------------------SSIGDMNSLEALDLSHNQLTGEIP-EH 219
           L L  N  +   P                    S I ++ +L  L L  N ++   P   
Sbjct: 270 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 329

Query: 220 LAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLY 279
           L      L+ L    N +     S    L  +  L    N  +   P  L+N + +  L 
Sbjct: 330 LT----KLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381

Query: 280 MSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPS 339
           ++D         +  N+S    +   +  L  P              D++ N  S +   
Sbjct: 382 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA--TISDGGSYTEPDITWNLPSYTNEV 439

Query: 340 CSSHSSITQVHLSKNMLYG 358
             + S    +        G
Sbjct: 440 SYTFSQPVTIGKGTTTFSG 458

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  100 bits (250), Expect = 2e-22
 Identities = 65/359 (18%), Positives = 132/359 (36%), Gaps = 59/359 (16%)

Query: 227 LEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY 286
           L    +++++ + Q+F+    L + +   L     T  +    ++   +  L      + 
Sbjct: 3   LGSATITQDTPINQIFTDTA-LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI- 58

Query: 287 GNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSI 346
                 +  L++L  I  ++N L    PL+   L  L  + ++ N I+  +   ++ +++
Sbjct: 59  -KSIDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIA-DITPLANLTNL 114

Query: 347 TQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLE 406
           T + L  N +          N +++  L+LS N+ S      +  LT L+ L   N   +
Sbjct: 115 TGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD 169

Query: 407 GEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLH--NNGDNDDSLVPAFNHNVRSTY 464
                 L  L  L  +D+S+N +   I      T+L      +N  S +           
Sbjct: 170 ---LKPLANLTTLERLDISSNKV-SDISVLAKLTNLESLIATNNQISDITPLGI------ 219

Query: 465 SAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALN 524
                                       L  +  + L+ N+L       ++ LT +  L+
Sbjct: 220 ----------------------------LTNLDELSLNGNQLKD--IGTLASLTNLTDLD 249

Query: 525 LSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583
           L++N ++ + P   S L ++  L +  N ++   P  L  L AL    +  N L    P
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (324), Expect = 1e-32
 Identities = 64/307 (20%), Positives = 123/307 (40%), Gaps = 23/307 (7%)

Query: 123 LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN 182
           +E  TNL  L L  N ++     P+     L  LY+  N       L+       L  L 
Sbjct: 62  IEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDISALQ---NLTNLRELY 116

Query: 183 LSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLF 242
           L+ ++ +   P  + ++  + +L+L  N    ++     M+   L +L ++E+ +  +  
Sbjct: 117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMT--GLNYLTVTESKV--KDV 170

Query: 243 SKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDI 302
           +    L  L SL L+ N      P  L++ + L       N +    P  + N++ L  +
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSL 226

Query: 303 MMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRY 362
            + +N +    PL    L+ L  L++  N IS  + +    + +  +++  N +      
Sbjct: 227 KIGNNKITDLSPLA--NLSQLTWLEIGTNQIS-DINAVKDLTKLKMLNVGSNQISDI--- 280

Query: 363 GTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLI 422
               N S + +L L+ N         I  LT L  L L+ N++    P+    L ++   
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKMDSA 338

Query: 423 DLSNNNI 429
           D +N  I
Sbjct: 339 DFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  127 bits (322), Expect = 2e-32
 Identities = 74/402 (18%), Positives = 146/402 (36%), Gaps = 63/402 (15%)

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIP-EHLAMSCFNLEFLVLSENSLLG 239
           L       N   P    D+       L    +T  +  E L     ++  LV++   +  
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQEELE----SITKLVVAGEKVAS 58

Query: 240 QLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSL 299
                  YL  L  L+L+ N  T   P  LSN   L  LY+  N +     + L NL++L
Sbjct: 59  --IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNL 112

Query: 300 YDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGP 359
            ++ +  +++    PL    L  +  L+L  N+    L   S+ + +  + ++++ +   
Sbjct: 113 RELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 360 LRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQL 419
                  N + + +L L+YN      P  +  LT L Y     N +    P  +  + +L
Sbjct: 171 ---TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRL 223

Query: 420 RLIDLSNNNIFGQIPGCLDNTSLH--NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESI 477
             + + NN I   +    + + L     G N  S + A                      
Sbjct: 224 NSLKIGNNKITD-LSPLANLSQLTWLEIGTNQISDINAVKD------------------- 263

Query: 478 MFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVT 537
                          L K+  +++  N+++      ++ L+++ +L L++N L       
Sbjct: 264 ---------------LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 538 FSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLS 579
              L  + +L +S N++    P  L  L+ +     A+  + 
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  120 bits (304), Expect = 4e-30
 Identities = 73/409 (17%), Positives = 146/409 (35%), Gaps = 80/409 (19%)

Query: 123 LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN 182
             +       VL+  S++    +  +    +  L V+         +E   Y   L YLN
Sbjct: 18  DADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVASIQGIE---YLTNLEYLN 72

Query: 183 LSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLF 242
           L+ N      P  + ++  L  L +  N++T      L  +  NL  L L+E+++     
Sbjct: 73  LNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQ-NLTNLRELYLNEDNISD--I 125

Query: 243 SKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDI 302
           S    L K+ SL+L AN+        LSN + L  L ++++ +    P  + NL+ LY +
Sbjct: 126 SPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182

Query: 303 MMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRY 362
            +  N ++   PL    L  L       N I+  +   ++ + +  + +  N +      
Sbjct: 183 SLNYNQIEDISPL--ASLTSLHYFTAYVNQIT-DITPVANMTRLNSLKIGNNKITDL--- 236

Query: 363 GTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLI 422
               N S +  L++  N  S      ++ LT L+ L + +N +     +    L QL  +
Sbjct: 237 SPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISVLN--NLSQLNSL 292

Query: 423 DLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTK 482
            L+NN +  +    +                                             
Sbjct: 293 FLNNNQLGNEDMEVIGG------------------------------------------- 309

Query: 483 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLT 531
                     L  +  + LS N +T   P  ++ L+++ + + ++  + 
Sbjct: 310 ----------LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (301), Expect = 1e-29
 Identities = 71/334 (21%), Positives = 132/334 (39%), Gaps = 30/334 (8%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           + S+  L +   ++    S   + +LT++E L L+ NQ      + P  N  KL      
Sbjct: 43  LESITKLVVAGEKVA---SIQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIG 96

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
            N+I   S   + +T    L  + L+   I  +    L N   +  ++   ++   +   
Sbjct: 97  TNKITDISALQN-LT---NLRELYLNEDNI--SDISPLANLTKMYSLNLGANHNLSDLSP 150

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
             L N T LN L +  + +      PI     L +L ++ N  +   PL        L Y
Sbjct: 151 --LSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISPLA---SLTSLHY 203

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
                N      P  + +M  L +L + +N++T   P     +   L +L +  N +   
Sbjct: 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQI--S 256

Query: 241 LFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLY 300
             +    L KL  L++ +N  +      L+N S L  L++++N L       +G L++L 
Sbjct: 257 DINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 301 DIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS 334
            + ++ NH+    PL    L+ +   D +   I 
Sbjct: 315 TLFLSQNHITDIRPLA--SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.5 bits (241), Expect = 9e-22
 Identities = 51/332 (15%), Positives = 119/332 (35%), Gaps = 56/332 (16%)

Query: 251 LVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQ 310
             +L           P   ++ +      +   ++   +      L S+  +++A   + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 311 GPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSS 370
               +E   L  L+ L+L+ N I+  +   S+   +T +++  N +          N ++
Sbjct: 58  SIQGIE--YLTNLEYLNLNGNQIT-DISPLSNLVKLTNLYIGTNKITDI---SALQNLTN 111

Query: 371 IVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIF 430
           +  L L+ ++ S   P  +  LT +  L L  N+        L  +  L  + ++ + + 
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKV- 167

Query: 431 GQIPGCLDNTSLH--NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSY 488
             +    + T L+  +   N    +                                   
Sbjct: 168 KDVTPIANLTDLYSLSLNYNQIEDISPLAS------------------------------ 197

Query: 489 KGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLD 548
               L  ++      N++T   P  ++ +TR+ +L + +N +T + P   +NL+Q+  L+
Sbjct: 198 ----LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE 249

Query: 549 ISYNNLNGKIPPQLVELNALAFFSVAHNNLSG 580
           I  N ++      + +L  L   +V  N +S 
Sbjct: 250 IGTNQISD--INAVKDLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 9e-15
 Identities = 53/264 (20%), Positives = 94/264 (35%), Gaps = 52/264 (19%)

Query: 323 LQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFS 382
              L      I+  +   +  +   +  L K  +   +   T     SI  L ++    +
Sbjct: 2   AATLATLPAPIN-QIFPDADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKVA 57

Query: 383 GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDN-TS 441
                 IE LT L YL L  N +    P  L  L +L  + +  N I       L N T+
Sbjct: 58  SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTN 111

Query: 442 LH--NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGV 499
           L      +++ S +    +                                  L KMY +
Sbjct: 112 LRELYLNEDNISDISPLAN----------------------------------LTKMYSL 137

Query: 500 DLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIP 559
           +L  N    ++ P +S +T +  L ++ + +  V P   +NL  + SL ++YN +    P
Sbjct: 138 NLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194

Query: 560 PQLVELNALAFFSVAHNNLSGKIP 583
             L  L +L +F+   N ++   P
Sbjct: 195 --LASLTSLHYFTAYVNQITDITP 216

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (333), Expect = 1e-32
 Identities = 86/560 (15%), Positives = 172/560 (30%), Gaps = 81/560 (14%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFSG 59
            +++ L L  N++T  I    L    +++ L L  ++     ++E   F++   L+    
Sbjct: 26  AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDL 81

Query: 60  ECNEIFVESESSHSMTPKFQLESVALSGSGIHA-TFPKFLYNQHDLEYVDFSDSNLKGEF 118
             N +   S SS    P   L+ + L G+            N  +L+ +   +     E 
Sbjct: 82  SDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 119 LNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL 178
                   T+LN L ++  SL       ++    +  L +  +     +          +
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSV 198

Query: 179 VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238
            YL L   +      S +        +     + +      L    FN    +L     L
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-----VLTDESFNELLKLLRYILEL 253

Query: 239 GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS 298
            ++      L  L   +   +    E+ K       +  L++    L+ ++      L  
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYG 358
           +  I + ++ +          L  L+ LDLSEN +       +S        L       
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV-EEYLKNSACKGAWPSLQ------ 364

Query: 359 PLRYGTFFNRSSIVTLDLSYNSFS--GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL 416
                         TL LS N           +  L  L  L ++ N     +P      
Sbjct: 365 --------------TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409

Query: 417 KQLRLIDLSNNNIFGQIPGC-LDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEE 475
           +++R ++LS+  I   +  C      + +  +N+      F   ++              
Sbjct: 410 EKMRFLNLSSTGI-RVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQE------------- 455

Query: 476 SIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP 535
                                  + +S NKL   +P   S    +  + +S N L  V  
Sbjct: 456 -----------------------LYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD 490

Query: 536 VTFSNLNQVESLDISYNNLN 555
             F  L  ++ + +  N  +
Sbjct: 491 GIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  127 bits (320), Expect = 5e-31
 Identities = 84/491 (17%), Positives = 165/491 (33%), Gaps = 60/491 (12%)

Query: 129 LNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDF 188
                 R+ S +    +P      + +L +S N     I          L  L L  +  
Sbjct: 7   SGVCDGRSRSFT---SIPSGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI 62

Query: 189 NGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL----LGQLFSK 244
           N     +   + SLE LDLS N L+  +         +L++L L  N      +  LF  
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 245 KNYLRKLVSLHLDANYFTGEIPK-SLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIM 303
              L  L +L +       EI +   +  + L  L +   +L       L ++  ++ + 
Sbjct: 122 ---LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 304 MASNHLQGPIPLEFCQLNYLQILDLSENNIS----GSLPSCSSHSSITQVHLSKNMLYG- 358
           +  +     + +    L+ ++ L+L + N++      LP     S + ++    ++L   
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 359 -----PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIE--------RLTYLRYLILANNNL 405
                          S +   D + N    + P   +            +R L +    L
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298

Query: 406 EGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVPAFNHN 459
             ++      L++++ I + N+ +F        +        L  N   ++ L       
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN----- 353

Query: 460 VRSTYSAGSSTMEKEESIMFTTKEIS----FSYKGKPLNKMYGVDLSCNKLTGEIPPQIS 515
                SA        ++++ +   +            L  +  +D+S N     +P    
Sbjct: 354 -----SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ 407

Query: 516 KLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAH 575
              ++R LNLS   +  V       L   E LD+S NNL+      L  L  L    ++ 
Sbjct: 408 WPEKMRFLNLSSTGIRVVKTCIPQTL---EVLDVSNNNLD-SFSLFLPRLQEL---YISR 460

Query: 576 NNLSGKIPEWT 586
           N L   +P+ +
Sbjct: 461 NKLK-TLPDAS 470

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  123 bits (310), Expect = 1e-29
 Identities = 61/396 (15%), Positives = 128/396 (32%), Gaps = 44/396 (11%)

Query: 201 SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANY 260
           +    D      T  IP  L      ++ L LS N +             L  L L ++ 
Sbjct: 6   ASGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 261 FTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG-PIPLEFCQ 319
                  +  +   LE L +SDN+L     +W G LSSL  + +  N  Q   +   F  
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 320 LNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYN 379
           L  LQ L +        +                           F   +S+  L++   
Sbjct: 122 LTNLQTLRIGNVETFSEIRR-----------------------IDFAGLTSLNELEIKAL 158

Query: 380 SFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFG-------- 431
           S   Y    ++ +  + +L L  +     + I    L  +R ++L + N+          
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 432 -QIPGCLDNTSLHNNGDNDDS---LVPAFNHNVRSTY-SAGSSTMEKEESIMFTTKEISF 486
            ++   +   +   +   D+S   L+    + +  +       T+        +  ++  
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 487 SYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVES 546
                    +  + +    L  ++    S L +++ + + ++ +  V      +L  +E 
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 547 LDISYNNLNGKIPPQLVELNALAF---FSVAHNNLS 579
           LD+S N +  +         A        ++ N+L 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  121 bits (306), Expect = 3e-29
 Identities = 77/435 (17%), Positives = 153/435 (35%), Gaps = 28/435 (6%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFS-G 59
           + SL  L L  N L+ ++SSS    L+S++ L L  N +Q       F N + L+    G
Sbjct: 73  LGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 60  ECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFL 119
                               L  + +    +     + L +  D+ ++    S      L
Sbjct: 132 NVETF--SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLL 188

Query: 120 NWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLV 179
               +  +++  L LR+ +L+     P+        +     F    +  E      +L+
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL-AFRGSVLTDESFNELLKLL 247

Query: 180 YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG 239
              L  ++             +L  L   +   +  + E   +    +  L + +  L  
Sbjct: 248 RYILELSEVEFDD-------CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 240 QLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL---YGNIPAWLGNL 296
            L +  + L K+  + ++ +           +   LE L +S+N +   Y    A  G  
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 297 SSLYDIMMASNHLQ--GPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKN 354
            SL  ++++ NHL+           L  L  LD+S N       SC     +  ++LS  
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST 420

Query: 355 MLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC 414
            +   ++        ++  LD+S N+           L  L+ L ++ N L+  +P    
Sbjct: 421 GI-RVVKTCIP---QTLEVLDVSNNNLD-SFS---LFLPRLQELYISRNKLK-TLP-DAS 470

Query: 415 RLKQLRLIDLSNNNI 429
               L ++ +S N +
Sbjct: 471 LFPVLLVMKISRNQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (294), Expect = 1e-27
 Identities = 74/430 (17%), Positives = 158/430 (36%), Gaps = 42/430 (9%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           ++SL+ L+L  N       +S   +LT+++ L +   +         F   + L     +
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 61  CNEI-FVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFL 119
              +   +S+S  S+     +  + L  S        F      + Y++  D+NL     
Sbjct: 157 ALSLRNYQSQSLKSIR---DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 120 NWL--LENNTNLNTLVLRNNSLSGPFRMPI----QPHWHLDTLYVSKNFFQGNIPLEIG- 172
           + L   E ++ +  L  R + L+      +    +    L  +        G        
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 173 ---------VYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMS 223
                    V    +  L++ +      + +    +  ++ + + ++++   +P   +  
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQH 332

Query: 224 CFNLEFLVLSEN---SLLGQLFSKKNYLRKLVSLHLDANYFT--GEIPKSLSNCSHLEGL 278
             +LEFL LSEN       +  + K     L +L L  N+     +  + L    +L  L
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 279 YMSDNNLYGNIP---AWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG 335
            +S N     +P    W   +  L    ++S  ++    ++ C    L++LD+S NN+  
Sbjct: 393 DISRNTF-HPMPDSCQWPEKMRFLN---LSSTGIRV---VKTCIPQTLEVLDVSNNNLD- 444

Query: 336 SLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYL 395
           S         + ++++S+N L   L   + F    ++ + +S N          +RLT L
Sbjct: 445 SFSL--FLPRLQELYISRNKLKT-LPDASLFP--VLLVMKISRNQLKSVPDGIFDRLTSL 499

Query: 396 RYLILANNNL 405
           + + L  N  
Sbjct: 500 QKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.2 bits (198), Expect = 6e-16
 Identities = 55/330 (16%), Positives = 110/330 (33%), Gaps = 34/330 (10%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQ---------FQIPFSLEPFFNN 51
           ++S+R L L    L      SPL        +     +          ++   L      
Sbjct: 195 LSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 52  SKLKVFSGECNEIFVESESSHSMTPKF------QLESVALSGSGIHATFPKFLYNQHDLE 105
           S+++      N +   + S   +  +        +  + +    +             ++
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 106 YVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSG-PFRMPIQPHW--HLDTLYVSKNF 162
            +   +S +         ++  +L  L L  N +     +          L TL +S+N 
Sbjct: 314 RITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 163 FQGNIPLEIGV--YFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHL 220
            + ++     +      L  L++SRN F+  +P S      +  L+LS   +   +   +
Sbjct: 373 LR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI 429

Query: 221 AMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYM 280
                 LE L +S N     L S   +L +L  L++  N     +P + S    L  + +
Sbjct: 430 PQ---TLEVLDVSNN----NLDSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKI 480

Query: 281 SDNNLYGNIPAWLGNLSSLYDIMMASNHLQ 310
           S N L          L+SL  I + +N   
Sbjct: 481 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 31/237 (13%), Positives = 73/237 (30%), Gaps = 36/237 (15%)

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
            +    D    SF+  IP  +     ++ L L+ N +       L     L+++ L ++ 
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 429 IFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTY-SAGSSTMEKEESIMFTTKEISFS 487
           I           ++  +         AF       +     + +    S  F        
Sbjct: 62  I----------NTIEGD---------AFYSLGSLEHLDLSDNHLSSLSSSWF-------- 94

Query: 488 YKGKPLNKMYGVDLSCNKLTG-EIPPQISKLTRIRALNLSHNNLTGVIPV-TFSNLNQVE 545
               PL+ +  ++L  N      +      LT ++ L + +      I    F+ L  + 
Sbjct: 95  ---GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 546 SLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPL 602
            L+I   +L       L  +  +   ++  +  +  +  +    ++ +        L
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  127 bits (321), Expect = 2e-32
 Identities = 57/340 (16%), Positives = 106/340 (31%), Gaps = 58/340 (17%)

Query: 104 LEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFF 163
            E + F  S      L    +  +        + +         Q + +   +       
Sbjct: 14  RENLYFQGSTA----LRPYHDVLSQWQRHYNADRNRWHSA--WRQANSNNPQIETRTGRA 67

Query: 164 QGNIPLEIGV-YFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAM 222
                  +     P  V L L         P     ++ L+ + +    L  E+P+ +  
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ- 124

Query: 223 SCFNLEFLVLSENSL------LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCS--- 273
               LE L L+ N L      +  L        +L  L + A     E+P+ L++     
Sbjct: 125 QFAGLETLTLARNPLRALPASIASL-------NRLRELSIRACPELTELPEPLASTDASG 177

Query: 274 ------HLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILD 327
                 +L+ L +    +  ++PA + NL +L  + + ++ L   +      L  L+ LD
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235

Query: 328 LSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPY 387
           L       + P                          F  R+ +  L L   S    +P 
Sbjct: 236 LRGCTALRNYPP------------------------IFGGRAPLKRLILKDCSNLLTLPL 271

Query: 388 WIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNN 427
            I RLT L  L L        +P  + +L    +I +  +
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (258), Expect = 3e-24
 Identities = 50/399 (12%), Positives = 98/399 (24%), Gaps = 99/399 (24%)

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
              L    +         +         D +                 N +    +  +L
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-----NPQIETRTGRAL 68

Query: 238 ------LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA 291
                 L             V+L L +     + P      SHL+ + +    L   +P 
Sbjct: 69  KATADLLEDA-----TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPD 121

Query: 292 WLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHL 351
            +   + L  + +A N L+  +P     LN L+ L +        LP       +     
Sbjct: 122 TMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPE-----PLASTDA 175

Query: 352 SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPI 411
                                                 + L  L+ L L    +   +P 
Sbjct: 176 ----------------------------------SGEHQGLVNLQSLRLEWTGIR-SLPA 200

Query: 412 QLCRLKQLRLIDLSNNNIFGQIP---GCLDN-TSLHNNGDNDDSLVPAFNHNVRSTYSAG 467
            +  L+ L+ + + N+ +   +      L     L   G       P             
Sbjct: 201 SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP------------- 246

Query: 468 SSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLS-CNKLTGEIPPQISKLTRIRALNLS 526
                                 G     +  + L  C+ L   +P  I +LT++  L+L 
Sbjct: 247 -------PIF------------GG-RAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLR 285

Query: 527 HNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVEL 565
                  +P   + L     + +  +        + V  
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (251), Expect = 3e-23
 Identities = 46/340 (13%), Positives = 94/340 (27%), Gaps = 56/340 (16%)

Query: 247 YLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMAS 306
           +     +L+   +         LS     +  Y +D N + +      N ++        
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQ---WQRHYNADRNRW-HSAWRQANSNNPQIETRTG 65

Query: 307 NHLQG-PIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTF 365
             L+     LE         L+L    +    P                           
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPD------------------------QA 100

Query: 366 FNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLS 425
           F  S +  + +        +P  +++   L  L LA N L   +P  +  L +LR + + 
Sbjct: 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158

Query: 426 NNNIFGQIPGCLDNTSLHNNGDNDDSLVP-AFNHNVRSTYSAGSSTMEKEESIMFTTKEI 484
                 ++P  L +T          +L                         I      I
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT----------------GIRSLPASI 202

Query: 485 SFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV 544
           +       L  +  + +  + L+  + P I  L ++  L+L         P  F     +
Sbjct: 203 AN------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 545 ESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPE 584
           + L +   +    +P  +  L  L    +       ++P 
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 51/370 (13%), Positives = 102/370 (27%), Gaps = 85/370 (22%)

Query: 190 GSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKN--- 246
           GS        +  E L    +       + L+      +    ++ +     + + N   
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLS----QWQRHYNADRNRWHSAWRQANSNN 57

Query: 247 ---------------------YLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL 285
                                     V+L L +     + P      SHL+ + +    L
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

Query: 286 YGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSS 345
              +P  +   + L  + +A N L+  +P     LN L+ L +        LP       
Sbjct: 117 -MELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELP-----EP 169

Query: 346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405
           +     S                 ++ +L L +      +P  I  L  L+ L + N+ L
Sbjct: 170 LASTDASGE----------HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218

Query: 406 EGEVPIQLCRLKQLRLIDLSNNNIFGQIP---GCLDN-TSLHNNGDNDDSLVPAFNHNVR 461
              +   +  L +L  +DL         P   G       L     ++   +P       
Sbjct: 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP------- 270

Query: 462 STYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIR 521
                          I             + L ++  +DL        +P  I++L    
Sbjct: 271 -------------LDI------------HR-LTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

Query: 522 ALNLSHNNLT 531
            + +  +   
Sbjct: 305 IILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.9 bits (234), Expect = 5e-21
 Identities = 50/359 (13%), Positives = 103/359 (28%), Gaps = 69/359 (19%)

Query: 1   MTSLRVLSL-DLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSG 59
            +    L       L           L+  +R + +        S     N++  ++ + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDV-----LSQWQRHYNADRN--RWHSAWRQANSNNPQIETR 63

Query: 60  ECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLK---G 116
               +   ++     T      ++ L    +   FP   +    L+++    + L     
Sbjct: 64  TGRALKATADLLEDATQP-GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPD 121

Query: 117 EFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFP 176
               +       L TL L  N L                           +P  I     
Sbjct: 122 TMQQF-----AGLETLTLARNPLR-------------------------ALPASIA-SLN 150

Query: 177 RLVYLNLSRNDFNGSIPSSIG---------DMNSLEALDLSHNQLTGEIPEHLAMSCFNL 227
           RL  L++        +P  +           + +L++L L    +   +P  +A +  NL
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNL 208

Query: 228 EFLVLSENSL------LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMS 281
           + L +  + L      +  L        KL  L L         P      + L+ L + 
Sbjct: 209 KSLKIRNSPLSALGPAIHHL-------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 282 DNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC 340
           D +    +P  +  L+ L  + +        +P    QL    I+ +   ++   L   
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 35/196 (17%)

Query: 389 IERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDN 448
               +    L    +         L + ++    D +  +   +     +N  +      
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNPQIETRTGR 66

Query: 449 DDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG 508
                               +T     ++                      +L    L  
Sbjct: 67  ALKATAD---------LLEDATQPGRVAL----------------------ELRSVPLP- 94

Query: 509 EIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNAL 568
           + P Q  +L+ ++ + +    L   +P T      +E+L ++ N L   +P  +  LN L
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL 152

Query: 569 AFFSVAHNNLSGKIPE 584
              S+       ++PE
Sbjct: 153 RELSIRACPELTELPE 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 500 DLS-CNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
           DL  C  L    PP       ++ L L   +    +P+    L Q+E LD+       ++
Sbjct: 235 DLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 559 PPQLVELNALAFFSVAHNNLSGKIPE 584
           P  + +L A     V   +L  ++ +
Sbjct: 294 PSLIAQLPANCIILV-PPHLQAQLDQ 318

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (309), Expect = 6e-30
 Identities = 66/309 (21%), Positives = 119/309 (38%), Gaps = 15/309 (4%)

Query: 126 NTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSR 185
           +     ++           +P         L + KN  +  +  +    FP L  L L+ 
Sbjct: 10  SAQDRAVLCHRKRFV---AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNE 65

Query: 186 NDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---SLLGQLF 242
           N  +   P +  ++ +L  L L  N+L   IP  +     NL  L +SEN    LL  +F
Sbjct: 66  NIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 243 SKKNYLRKLVSLHLDANYFTGEIP-KSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYD 301
                L  L SL +  N     I  ++ S  + LE L +   NL       L +L  L  
Sbjct: 125 QD---LYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

Query: 302 IMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSH-SSITQVHLSKNMLYGPL 360
           + +   ++       F +L  L++L++S      ++     +  ++T + ++   L   +
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-V 239

Query: 361 RYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLR 420
            Y    +   +  L+LSYN  S      +  L  L+ + L    L    P     L  LR
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299

Query: 421 LIDLSNNNI 429
           ++++S N +
Sbjct: 300 VLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (309), Expect = 6e-30
 Identities = 68/386 (17%), Positives = 123/386 (31%), Gaps = 88/386 (22%)

Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
                 L+L +N               LE L+L+ N ++  +      + FNL  L L  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 235 N---SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA 291
           N    +   +F+    L  L  L +  N     +     +  +L+ L + DN+L      
Sbjct: 90  NRLKLIPLGVFTG---LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 292 WLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHL 351
               L+SL  + +   +L          L+ L +L L   NI+ ++              
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRD------------ 193

Query: 352 SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPI 411
                       +F     +  L++S+  +   +         L  L + + NL   VP 
Sbjct: 194 -----------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPY 241

Query: 412 QLCR-LKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSST 470
              R L  LR ++LS N I          +++  +                         
Sbjct: 242 LAVRHLVYLRFLNLSYNPI----------STIEGS---------ML-------------- 268

Query: 471 MEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNN 529
                                 L ++  + L   +L   + P     L  +R LN+S N 
Sbjct: 269 --------------------HELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQ 307

Query: 530 LTGVIPVTFSNLNQVESLDISYNNLN 555
           LT +    F ++  +E+L +  N L 
Sbjct: 308 LTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (289), Expect = 2e-27
 Identities = 70/394 (17%), Positives = 136/394 (34%), Gaps = 90/394 (22%)

Query: 191 SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---SLLGQLFSKKNY 247
           ++P  I        LDL  N++   + +    S  +LE L L+EN   ++    F+    
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFN---N 78

Query: 248 LRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASN 307
           L  L +L L +N          +  S+L  L +S+N +   +     +L +L  + +  N
Sbjct: 79  LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138

Query: 308 HLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFN 367
            L       F  LN L+ L L + N++ S+P+                           +
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLT-SIPT-----------------------EALSH 174

Query: 368 RSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNN 427
              ++ L L + + +    Y  +RL  L+ L +++      +         L  + +++ 
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 428 NIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFS 487
           N+          T++            A  H                             
Sbjct: 235 NL----------TAVPYL---------AVRH----------------------------- 246

Query: 488 YKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVES 546
                L  +  ++LS N ++  I   +  +L R++ + L    L  V P  F  LN +  
Sbjct: 247 -----LVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300

Query: 547 LDISYNNLNGKIPPQLVE-LNALAFFSVAHNNLS 579
           L++S N L   +   +   +  L    +  N L+
Sbjct: 301 LNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (278), Expect = 6e-26
 Identities = 64/336 (19%), Positives = 113/336 (33%), Gaps = 45/336 (13%)

Query: 103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHW-----HLDTLY 157
           +   +D   + +K         +  +L  L L  N +S      ++P       +L TL 
Sbjct: 33  ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA-----VEPGAFNNLFNLRTLG 86

Query: 158 VSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-GDMNSLEALDLSHNQLTGEI 216
           +  N  +  IPL +      L  L++S N     +   +  D+ +L++L++  N L   I
Sbjct: 87  LRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YI 143

Query: 217 PEHLAMSCFNLEFLVLSEN---SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCS 273
                    +LE L L +    S+  +  S   +L  L+ L L           S     
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALS---HLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 274 HLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNI 333
            L+ L +S       +        +L  + +   +L     L    L YL+ L+LS N I
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 334 SGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLT 393
           S ++                                 +  + L     +   PY    L 
Sbjct: 261 S-TIEG-----------------------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 394 YLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
           YLR L ++ N L          +  L  + L +N +
Sbjct: 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (261), Expect = 8e-24
 Identities = 72/358 (20%), Positives = 134/358 (37%), Gaps = 64/358 (17%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
           T  R+L L  N++   ++         +E L L+ N      ++EP         F+   
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS---AVEP-------GAFNNLF 80

Query: 62  NEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNW 121
           N                 L ++ L  + +            +L  +D S++ +    L++
Sbjct: 81  N-----------------LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDY 122

Query: 122 LLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL 181
           + ++  NL +L + +N L                 Y+S   F G            L  L
Sbjct: 123 MFQDLYNLKSLEVGDNDLV----------------YISHRAFSGL---------NSLEQL 157

Query: 182 NLSRNDFNGSIPS-SIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
            L + +   SIP+ ++  ++ L  L L H  +   I ++     + L+ L +S    L  
Sbjct: 158 TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDT 215

Query: 241 LFSKKNYLRKLVSLHLDANYFTGEIP-KSLSNCSHLEGLYMSDNNLYGNIPA-WLGNLSS 298
           +     Y   L SL +     T  +P  ++ +  +L  L +S N +   I    L  L  
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLR 273

Query: 299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLP--SCSSHSSITQVHLSKN 354
           L +I +    L    P  F  LNYL++L++S N ++ +L      S  ++  + L  N
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.4 bits (222), Expect = 7e-19
 Identities = 63/349 (18%), Positives = 125/349 (35%), Gaps = 51/349 (14%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNNSKLKVFSG 59
              L  L L+ N ++  +      +L ++  L L  N+ + IP  +  F   S L     
Sbjct: 55  FPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGV--FTGLSNLTKLDI 111

Query: 60  ECNEI-FVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
             N+I  +       +     L+S+ +  + +     +     + LE +     NL    
Sbjct: 112 SENKIVILLDYMFQDLY---NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SI 167

Query: 119 LNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL 178
               L +   L  L LR+ +++                 +    F+            RL
Sbjct: 168 PTEALSHLHGLIVLRLRHLNIN----------------AIRDYSFKR---------LYRL 202

Query: 179 VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN--- 235
             L +S   +  ++  +     +L +L ++H  LT  +P         L FL LS N   
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 236 SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA-WLG 294
           ++ G +  +   L +L  + L         P +    ++L  L +S N L   +      
Sbjct: 262 TIEGSMLHE---LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEESVFH 317

Query: 295 NLSSLYDIMMASNHLQGPIPLEF-CQLNYLQILDLSENNISGSLPSCSS 342
           ++ +L  +++ SN      PL   C+L ++        N +   P+C++
Sbjct: 318 SVGNLETLILDSN------PLACDCRLLWVF-RRRWRLNFNRQQPTCAT 359

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 79.8 bits (197), Expect = 8e-16
 Identities = 52/268 (19%), Positives = 100/268 (37%), Gaps = 62/268 (23%)

Query: 323 LQILDLSENNISGSLPSC--SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNS 380
            ++LDL +N I  +L     +S   + ++ L++N++   +  G F N  ++ TL L  N 
Sbjct: 34  TRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNR 91

Query: 381 FSGYIPYWI-ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDN 439
               IP  +   L+ L  L ++ N +   +      L  L+ +++ +N++          
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL---------- 140

Query: 440 TSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGV 499
             + +          AF+                                   LN +  +
Sbjct: 141 VYISHR---------AFSG----------------------------------LNSLEQL 157

Query: 500 DLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
            L    LT  IP +  S L  +  L L H N+  +   +F  L +++ L+IS+      +
Sbjct: 158 TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 559 PPQLVELNALAFFSVAHNNLSGKIPEWT 586
            P  +    L   S+ H NL+  +P   
Sbjct: 217 TPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 41/225 (18%), Positives = 65/225 (28%), Gaps = 47/225 (20%)

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
           +    LDL  N              +L  L L  N +    P     L  LR + L +N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 429 IFGQIP-GCLDNTS------LHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTT 481
               IP G     S      +  N                         +      MF  
Sbjct: 92  -LKLIPLGVFTGLSNLTKLDISENK------------------------IVILLDYMF-- 124

Query: 482 KEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSN 540
                    + L  +  +++  N L   I  +  S L  +  L L   NLT +     S+
Sbjct: 125 ---------QDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174

Query: 541 LNQVESLDISYNNLNGKIPPQ-LVELNALAFFSVAHNNLSGKIPE 584
           L+ +  L + + N+N  I       L  L    ++H      +  
Sbjct: 175 LHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTP 218

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 60/209 (28%)

Query: 373 TLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQ 432
            +      F   +P  I   T  R L L  N ++     +      L  ++L+ N +   
Sbjct: 15  AVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--- 68

Query: 433 IPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKP 492
                  +++            AFN+                                  
Sbjct: 69  -------SAVEPG---------AFNN---------------------------------- 78

Query: 493 LNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISY 551
           L  +  + L  N+L   IP  + + L+ +  L++S N +  ++   F +L  ++SL++  
Sbjct: 79  LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 552 NNLNGKIPPQ-LVELNALAFFSVAHNNLS 579
           N+L   I  +    LN+L   ++   NL+
Sbjct: 138 NDLV-YISHRAFSGLNSLEQLTLEKCNLT 165

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (306), Expect = 3e-29
 Identities = 78/467 (16%), Positives = 160/467 (34%), Gaps = 32/467 (6%)

Query: 101 QHDLEYVDFS-DSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVS 159
           Q+D  + D   D   +  +  +      N   +  +N+++       +     ++ L ++
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 160 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEH 219
               +  I      Y   +  L +  N      P    ++  L  L L  N L+  +P  
Sbjct: 84  DLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRG 141

Query: 220 LAMSCFNLEFLVLSEN---SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLE 276
           +  +   L  L +S N    +    F        L +L L +N  T  +   LS    L 
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQA---TTSLQNLQLSSNRLT-HVD--LSLIPSLF 195

Query: 277 GLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGS 336
              +S N L     + L    ++ ++  + N +     +       L IL L  NN++  
Sbjct: 196 HANVSYNLL-----STLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLT-D 246

Query: 337 LPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLR 396
                ++  + +V LS N L   + Y  F     +  L +S N     +  + + +  L+
Sbjct: 247 TAWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 304

Query: 397 YLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI----FGQIPGCLDNTSLHNNGDNDDSL 452
            L L++N+L   V     +  +L  + L +N+I           L N +L +N  + +SL
Sbjct: 305 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT-LKNLTLSHNDWDCNSL 362

Query: 453 VPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP 512
              F +  R          + +  +      +      KP        ++   +  ++  
Sbjct: 363 RALFRNVARPAVDDADQHCKIDYQL---EHGLCCKESDKPYLDRLLQYIALTSVVEKVQR 419

Query: 513 QISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIP 559
              + +    +N   +    +       L   E L+   N L  ++ 
Sbjct: 420 AQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ 466

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  104 bits (260), Expect = 2e-23
 Identities = 68/360 (18%), Positives = 137/360 (38%), Gaps = 60/360 (16%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFS 58
           + + ++++   + +   + ++ L     +E L L+  Q +    ++   F     ++   
Sbjct: 50  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLY 105

Query: 59  GECNEI-FVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGE 117
              N I ++      ++     L  + L  + + +      +N   L  +  S++NL  E
Sbjct: 106 MGFNAIRYLPPHVFQNVP---LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL--E 160

Query: 118 FLNW-LLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFP 176
            +     +  T+L  L L +N L+                         ++ L +    P
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLT-------------------------HVDLSL---IP 192

Query: 177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS 236
            L + N+S N       S++    ++E LD SHN +   +   +      L  L L  N+
Sbjct: 193 SLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNN 243

Query: 237 L--LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
           L     L +       LV + L  N     +         LE LY+S+N L   +  +  
Sbjct: 244 LTDTAWLLN----YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQ 298

Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKN 354
            + +L  + ++ NHL   +     Q + L+ L L  N+I  +L   S+H ++  + LS N
Sbjct: 299 PIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLKL-STHHTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.8 bits (238), Expect = 9e-21
 Identities = 57/347 (16%), Positives = 116/347 (33%), Gaps = 48/347 (13%)

Query: 246 NYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMA 305
            Y      +H+D               ++ + +   ++ +     A L +   +  + + 
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 306 SNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC--SSHSSITQVHLSKNMLYGPLRYG 363
              ++      F   + +Q L +  N I   LP     +   +T + L +N L   L  G
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRG 141

Query: 364 TFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLID 423
            F N   + TL +S N+         +  T L+ L L++N L     + L  +  L   +
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHAN 198

Query: 424 LSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKE 483
           +S N +   +   +    L  + ++ + +    N  +                       
Sbjct: 199 VSYNLL-STLAIPIAVEELDASHNSINVVRGPVNVELTI--------------------- 236

Query: 484 ISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQ 543
                          + L  N LT      +     +  ++LS+N L  ++   F  + +
Sbjct: 237 ---------------LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 544 VESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFT 590
           +E L IS N L   +      +  L    ++HN+L   +     QF 
Sbjct: 280 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 324

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.7 bits (186), Expect = 2e-14
 Identities = 49/300 (16%), Positives = 100/300 (33%), Gaps = 60/300 (20%)

Query: 289 IPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC--SSHSSI 346
           I + L      YD+ +           E   LN  +I+    + +   LP+    S   +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 347 TQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLE 406
             ++L+   +   +    F    +I  L + +N+     P+  + +  L  L+L  N+L 
Sbjct: 78  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

Query: 407 GEVPIQL-CRLKQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVPAFNHN 459
             +P  +     +L  + +SNNN+          T+      L +N              
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-------------- 181

Query: 460 VRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTR 519
                            +      +  S     +  ++  ++S N L+      ++    
Sbjct: 182 ----------------RL----THVDLSL----IPSLFHANVSYNLLS-----TLAIPIA 212

Query: 520 IRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLS 579
           +  L+ SHN++  V       L     L + +NNL       L+    L    +++N L 
Sbjct: 213 VEELDASHNSINVVRGPVNVEL---TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 46/376 (12%), Positives = 109/376 (28%), Gaps = 35/376 (9%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
             L +L L  N LT    ++ L++   +  + LSYN+ +      PF    +L+      
Sbjct: 232 VELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISN 287

Query: 62  NEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNW 121
           N +   +     +     L+ + LS + +     +       LE +    +++    L  
Sbjct: 288 NRLVALNLYGQPIP---TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV--TLK- 340

Query: 122 LLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVY------- 174
            L  +  L  L L +N         +  +     +  +    + +  LE G+        
Sbjct: 341 -LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKP 399

Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHN---------QLTGEIPEHLAMSCF 225
           +   +   ++       +  + G  ++ + ++   +          +  +  E L     
Sbjct: 400 YLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVN 459

Query: 226 NLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL 285
            L   V    +   Q       L   +  +L       +     S+  +    ++ +   
Sbjct: 460 ELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQA 519

Query: 286 YGNIPAWLGNLSSLYDIMMASNHLQGPIPLE-------FCQLNYLQILDLSENNISGSLP 338
           +           +        +  Q  I LE         Q    Q   L    +     
Sbjct: 520 FKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579

Query: 339 SCSSHSSITQVHLSKN 354
             + +    +V    +
Sbjct: 580 KKNRNPDTRRVSHHHH 595

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (302), Expect = 4e-29
 Identities = 93/556 (16%), Positives = 183/556 (32%), Gaps = 115/556 (20%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
           T L+      + LT  +      ++ S    + ++++++            ++ V     
Sbjct: 11  TFLQEPLRHSSNLT-EMPVE-AENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRD 67

Query: 62  NEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNW 121
                            Q   + L+  G+  + P+   +   LE +  S ++L    L  
Sbjct: 68  C-------------LDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT--ELPE 108

Query: 122 LLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL 181
           L ++  +L        +LS            L+ L VS N  +  +P E+      L  +
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQ-NSSFLKII 158

Query: 182 NLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQL 241
           ++  N     +P       SLE +   +NQL  E+PE   +    L  +    N     L
Sbjct: 159 DVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELPELQNLP--FLTAIYADNN----SL 207

Query: 242 FSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYD 301
               +    L S+    N         L N   L  +Y  +N L   +P    +L +L  
Sbjct: 208 KKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEALN- 263

Query: 302 IMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLR 361
             +  N+L   +P     L +L + +   + +S   P      ++  ++ S N +     
Sbjct: 264 --VRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPP------NLYYLNASSNEIRSL-- 312

Query: 362 YGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRL 421
                   S+  L++S N     +P    RL     LI + N+L  EVP     LKQL  
Sbjct: 313 ---CDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQNLKQL-- 362

Query: 422 IDLSNNNI--FGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMF 479
             +  N +  F  IP  +++  ++++       VP    N++                  
Sbjct: 363 -HVEYNPLREFPDIPESVEDLRMNSHLAE----VPELPQNLKQ----------------- 400

Query: 480 TTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFS 539
                              + +  N L  E P     +     L ++   +         
Sbjct: 401 -------------------LHVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHE 437

Query: 540 NLNQVESLDISYNNLN 555
             +++E     +++ +
Sbjct: 438 TTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (297), Expect = 2e-28
 Identities = 89/486 (18%), Positives = 165/486 (33%), Gaps = 109/486 (22%)

Query: 112 SNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEI 171
            N+   FL   L +++NL  + +   ++                 Y + + ++ N P   
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAENVK-----------SKTEYYNAWSEWERNAPPGN 54

Query: 172 G------------VYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEH 219
           G                +   L L+    + S+P        LE+L  S N LT E+PE 
Sbjct: 55  GEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPEL 109

Query: 220 LAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLY 279
              S  +L     +  +L        +    L  L +  N    ++P  L N S L+ + 
Sbjct: 110 PQ-SLKSLLVDNNNLKAL-------SDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIID 159

Query: 280 MSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPS 339
           + +N+L   +P    +L  +      +N L+  +P E   L +L  +    N++   LP 
Sbjct: 160 VDNNSL-KKLPDLPPSLEFIA---AGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPD 212

Query: 340 CSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLI 399
                S+  +    N+L          N   + T+    N     +P   +    L  L 
Sbjct: 213 --LPLSLESIVAGNNILEEL---PELQNLPFLTTIYADNNLLK-TLP---DLPPSLEALN 263

Query: 400 LANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHN 459
           + +N L  ++P     L  L + +   + +  ++P  L   +  +N       +     +
Sbjct: 264 VRDNYLT-DLPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRS---LCDLPPS 318

Query: 460 VRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTR 519
           +                                      +++S NKL  E+P    +L R
Sbjct: 319 LEE------------------------------------LNVSNNKLI-ELPALPPRLER 341

Query: 520 IRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLS 579
              L  S N+L   +P    NL   + L + YN L  + P     +  L       N+  
Sbjct: 342 ---LIASFNHLA-EVPELPQNL---KQLHVEYNPLR-EFPDIPESVEDLRM-----NSHL 388

Query: 580 GKIPEW 585
            ++PE 
Sbjct: 389 AEVPEL 394

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.6 bits (215), Expect = 5e-18
 Identities = 74/350 (21%), Positives = 123/350 (35%), Gaps = 64/350 (18%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
            + L+++ +D N L   +         S+E +    NQ +    L    N   L     +
Sbjct: 152 SSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLE---ELPELQNLPFLTAIYAD 203

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
            N +    +   S      LES+    + +       L N   L  +   ++ LK     
Sbjct: 204 NNSLKKLPDLPLS------LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK----- 250

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
            L +   +L  L +R+N L+    +P  P   L  L VS+N F       +    P L Y
Sbjct: 251 TLPDLPPSLEALNVRDNYLT---DLPELPQ-SLTFLDVSENIFS-----GLSELPPNLYY 301

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
           LN S N+   S+        SLE L++S+N+L  E+P         LE L+ S N     
Sbjct: 302 LNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPP----RLERLIASFN----H 348

Query: 241 LFSKKNYLRKLVSLHLDANYFTGEIPKSLSN----------------CSHLEGLYMSDNN 284
           L       + L  LH++ N    E P    +                  +L+ L++  N 
Sbjct: 349 LAEVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407

Query: 285 LYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS 334
           L    P    ++  L    M S  +  P        + L+      ++  
Sbjct: 408 LR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.0 bits (203), Expect = 1e-16
 Identities = 60/340 (17%), Positives = 104/340 (30%), Gaps = 70/340 (20%)

Query: 248 LRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASN 307
              L      ++  T E+P    N       Y + +    N P   G    +        
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM-------- 60

Query: 308 HLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYG-PLRYGTFF 366
                  L  C       L+L+   +S SLP    H  +  +  S N L   P       
Sbjct: 61  ---AVSRLRDCLDRQAHELELNNLGLS-SLPELPPH--LESLVASCNSLTELP---ELPQ 111

Query: 367 NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSN 426
           +  S++  + +  + S   P        L YL ++NN LE ++P +L     L++ID+ N
Sbjct: 112 SLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDN 162

Query: 427 NNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISF 486
           N++  ++P    +      G+N    +P   +                            
Sbjct: 163 NSL-KKLPDLPPSLEFIAAGNNQLEELPELQN---------------------------- 193

Query: 487 SYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVES 546
                 L  +  +    N L  ++P     L     +   +N L         NL  + +
Sbjct: 194 ------LPFLTAIYADNNSLK-KLPDLPLSLES---IVAGNNILE--ELPELQNLPFLTT 241

Query: 547 LDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWT 586
           +    N L   +P     L AL        +L       T
Sbjct: 242 IYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLT 280

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 54/201 (26%)

Query: 384 YIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLH 443
           +I       T+L+  +  ++NL  E+P++   +K       + +      P         
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAP-----PGNG 55

Query: 444 NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSC 503
              +   S +                                         + + ++L+ 
Sbjct: 56  EQREMAVSRLRDC-----------------------------------LDRQAHELELNN 80

Query: 504 NKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLV 563
             L+  +P     L     L  S N+LT  +P    +L  +   + +   L+  +PP L 
Sbjct: 81  LGLS-SLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD-LPPLLE 134

Query: 564 ELNALAFFSVAHNNLSGKIPE 584
            L       V++N L  K+PE
Sbjct: 135 YLG------VSNNQLE-KLPE 148

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 19/116 (16%)

Query: 500 DLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNL-------------NQVES 546
               + LT E+P +   +        + +      P                    Q   
Sbjct: 17  LRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75

Query: 547 LDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPL 602
           L+++   L+  +P     L +L     + N+L+ ++PE      +   D+     L
Sbjct: 76  LELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKAL 126

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  113 bits (285), Expect = 7e-28
 Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 22/264 (8%)

Query: 170 EIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF 229
           EI     R     ++ +    ++ S      +++ LDLS N L+ +I          LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 230 LVLSENSL--LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYG 287
           L LS N L     L S    L  L +L L+ NY        L     +E L+ ++NN+  
Sbjct: 63  LNLSSNVLYETLDLES----LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-S 112

Query: 288 NIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG-SLPSCSSH-SS 345
            +           +I +A+N +     L+    + +Q LDL  N I   +    ++   +
Sbjct: 113 RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405
           +  ++L  N +Y  ++    F  + + TLDLS N  + ++    +    + ++ L NN L
Sbjct: 171 LEHLNLQYNFIYD-VKGQVVF--AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 406 EGEVPIQLCRLKQLRLIDLSNNNI 429
              +   L   + L   DL  N  
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (281), Expect = 3e-27
 Identities = 46/279 (16%), Positives = 95/279 (34%), Gaps = 20/279 (7%)

Query: 153 LDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQL 212
                V+ +  +      +      +  L+LS N  +    + +     LE L+LS N L
Sbjct: 12  YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 213 TGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNC 272
             E  +  ++S   L  L L+ N +  +L         + +LH   N  +  +    S  
Sbjct: 71  Y-ETLDLESLS--TLRTLDLNNNYV-QELLV----GPSIETLHAANNNIS-RVS--CSRG 119

Query: 273 SHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG-PIPLEFCQLNYLQILDLSEN 331
              + +Y+++N +        G  S +  + +  N +            + L+ L+L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 332 NISGSLPSCSSHSSITQVHLSKNMLYG-PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIE 390
            I   +      + +  + LS N L         F + + +  + L  N     I   + 
Sbjct: 180 FIY-DVKGQVVFAKLKTLDLSSNKLAFMG---PEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 391 RLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
               L +  L  N       ++    K  R+  ++   +
Sbjct: 235 FSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (262), Expect = 9e-25
 Identities = 50/287 (17%), Positives = 102/287 (35%), Gaps = 19/287 (6%)

Query: 48  FFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYV 107
             N ++ K+     + +  +   +      + ++ + LSG+ +       L     LE +
Sbjct: 6   KQNGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 108 DFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNI 167
           + S + L  E L+  LE+ + L TL L NN +       +     ++TL+ + N     +
Sbjct: 64  NLSSNVLY-ETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RV 114

Query: 168 PLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNL 227
                        + L+ N          G  + ++ LDL  N++       LA S   L
Sbjct: 115 SCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 228 EFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYG 287
           E L L  N +       +    KL +L L +N     +     + + +  + + +N L  
Sbjct: 172 EHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-V 227

Query: 288 NIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS 334
            I   L    +L    +  N       L        ++  +++  + 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.1 bits (245), Expect = 1e-22
 Identities = 58/352 (16%), Positives = 118/352 (33%), Gaps = 59/352 (16%)

Query: 264 EIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYL 323
           EI ++ +     +   ++D++L   + +   +  ++ ++ ++ N L      +      L
Sbjct: 4   EIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 324 QILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSG 383
           ++L+LS N +        S S++  + L+ N +             SI TL  + N+ S 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS- 112

Query: 384 YIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI----FGQIPGCLDN 439
            +     R    + + LANN +     +      +++ +DL  N I    F ++    D 
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 440 -TSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYG 498
              L+              +N                        I          K+  
Sbjct: 171 LEHLN------------LQYN-----------------------FIYDVKGQVVFAKLKT 195

Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
           +DLS NKL   + P+      +  ++L +N L  +I         +E  D+  N  +   
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 559 PPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPD 610
                        +VA   +  K+     +  T     + G    C + LP 
Sbjct: 254 LRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGA--YCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.8 bits (239), Expect = 9e-22
 Identities = 48/240 (20%), Positives = 85/240 (35%), Gaps = 38/240 (15%)

Query: 191 SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRK 250
           +I     + N  +   ++ + L   +                                  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQ-------------------------SAWN 35

Query: 251 LVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQ 310
           +  L L  N  +      L+  + LE L +S N LY      L +LS+L  + + +N++Q
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ 93

Query: 311 GPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSS 370
                E      ++ L  + NNIS  +   S       ++L+ N +   LR      RS 
Sbjct: 94  -----ELLVGPSIETLHAANNNIS-RVSC-SRGQGKKNIYLANNKITM-LRDLDEGCRSR 145

Query: 371 IVTLDLSYNSFSG-YIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
           +  LDL  N                L +L L  N +  +V  Q+    +L+ +DLS+N +
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKL 203

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.0 bits (216), Expect = 7e-19
 Identities = 52/328 (15%), Positives = 101/328 (30%), Gaps = 75/328 (22%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
             +++ L L  N L+  IS++ L   T +E L LS N            + S L+     
Sbjct: 33  AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLY---ETLDLESLSTLRTLDLN 88

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
            N +                               + L     +E +  +++N+      
Sbjct: 89  NNYV-------------------------------QELLVGPSIETLHAANNNIS----R 113

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
                      + L NN ++                 +                  R+ Y
Sbjct: 114 VSCSRGQGKKNIYLANNKITM----------------LRDLDEGC---------RSRVQY 148

Query: 181 LNLSRNDFNG-SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL-- 237
           L+L  N+ +  +        ++LE L+L +N +  ++   +  +   L+ L LS N L  
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFA--KLKTLDLSSNKLAF 205

Query: 238 LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY-GNIPAWLGNL 296
           +G  F        +  + L  N     I K+L    +LE   +  N  + G +  +    
Sbjct: 206 MGPEFQS---AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 297 SSLYDIMMASNHLQGPIPLEFCQLNYLQ 324
             +  +   +         E C +  L 
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 56/300 (18%)

Query: 313 IPLEFCQLNYLQILDLSENNISGSLPSCSSH-SSITQVHLSKNMLYGPLRYGTFFNRSSI 371
           I       N  +I  ++++++  +L S      ++ ++ LS N L   +        + +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKL 60

Query: 372 VTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFG 431
             L+LS N     +   +E L+ LR L L NN ++     +L     +  +  +NNNI  
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-S 112

Query: 432 QIPG----CLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTT-KEISF 486
           ++         N  L NN                                  T  +++  
Sbjct: 113 RVSCSRGQGKKNIYLANN--------------------------------KITMLRDLDE 140

Query: 487 SYKGKPLNKMYGVDLSCNKLTG-EIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVE 545
                  +++  +DL  N++         +    +  LNL +N +  V         +++
Sbjct: 141 G----CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLK 194

Query: 546 SLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCG 605
           +LD+S N L   + P+      + + S+ +N L   I +        +     GN   CG
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  116 bits (293), Expect = 2e-27
 Identities = 62/305 (20%), Positives = 101/305 (33%), Gaps = 48/305 (15%)

Query: 126 NTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSR 185
           N     L +  + L+    +P     H+ TL +  N    ++P         L  L +S 
Sbjct: 39  NNGNAVLNVGESGLT---TLPDCLPAHITTLVIPDNNLT-SLPALPP----ELRTLEVSG 90

Query: 186 NDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKK 245
           N    S+P     +  L         L              L  L +  N    QL S  
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGN----QLTSLP 137

Query: 246 NYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMA 305
                L  L +  N     +P   S    L  L+  +N L  ++P     L  L    ++
Sbjct: 138 VLPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQL-TSLPMLPSGLQELS---VS 189

Query: 306 SNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTF 365
            N L   +P    +   L  L    N ++ SLP  +  S + ++ +S N L       + 
Sbjct: 190 DNQLAS-LPTLPSE---LYKLWAYNNRLT-SLP--ALPSGLKELIVSGNRL------TSL 236

Query: 366 FNR-SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDL 424
               S +  L +S N  +  +P     L  L    +  N L   +P  L  L     ++L
Sbjct: 237 PVLPSELKELMVSGNRLT-SLPMLPSGLLSLS---VYRNQLT-RLPESLIHLSSETTVNL 291

Query: 425 SNNNI 429
             N +
Sbjct: 292 EGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (265), Expect = 6e-24
 Identities = 67/381 (17%), Positives = 112/381 (29%), Gaps = 107/381 (28%)

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
              LN+  +    ++P  +     +  L +  N LT  +P         L  L +S N L
Sbjct: 42  NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPP----ELRTLEVSGNQL 93

Query: 238 --LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGN 295
             L  L      L +L             +P   S    L  L++  N L  ++P     
Sbjct: 94  TSLPVLPPG---LLELSIFSNPLT----HLPALPSG---LCKLWIFGNQL-TSLPVLPPG 142

Query: 296 LSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNM 355
           L  L    ++ N L   +P    +L     L    N ++ SLP        +        
Sbjct: 143 LQELS---VSDNQLAS-LPALPSEL---CKLWAYNNQLT-SLPM-----LPS-------- 181

Query: 356 LYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR 415
                          +  L +S N  +  +P     L  L      NN L   +P     
Sbjct: 182 --------------GLQELSVSDNQLA-SLPTLPSELYKLWAY---NNRLT-SLPALPSG 222

Query: 416 LKQLRLIDLSNNNIFGQIPGCLDN-TSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKE 474
           LK+L    +S N +   +P        L     N  + +P     + S            
Sbjct: 223 LKEL---IVSGNRL-TSLPVLPSELKEL-MVSGNRLTSLPMLPSGLLS------------ 265

Query: 475 ESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVI 534
                                   + +  N+LT  +P  +  L+    +NL  N L+   
Sbjct: 266 ------------------------LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS--- 297

Query: 535 PVTFSNLNQVESLDISYNNLN 555
             T   L ++ S       + 
Sbjct: 298 ERTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (262), Expect = 1e-23
 Identities = 78/445 (17%), Positives = 128/445 (28%), Gaps = 82/445 (18%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNNSKLKVFSGE 60
               VL++  + LT    + P      I  L +  N    +P                  
Sbjct: 40  NGNAVLNVGESGLT----TLPDCLPAHITTLVIPDNNLTSLPALPP-------------- 81

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
                             +L ++ +SG+ +  + P       +L              L 
Sbjct: 82  ------------------ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNP--------LT 114

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
            L    + L  L +  N L+    +P+ P   L  L VS N    ++P         L  
Sbjct: 115 HLPALPSGLCKLWIFGNQLT---SLPVLPP-GLQELSVSDNQLA-SLPALPS----ELCK 165

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
           L    N    S+P        L+ L +S NQL   +P   +     L  L    N    +
Sbjct: 166 LWAYNNQLT-SLPMLPS---GLQELSVSDNQLA-SLPTLPS----ELYKLWAYNN----R 212

Query: 241 LFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLY 300
           L S       L  L +  N  T  +P   S    L+ L +S N L  ++P     L SL 
Sbjct: 213 LTSLPALPSGLKELIVSGNRLT-SLPVLPSE---LKELMVSGNRL-TSLPMLPSGLLSLS 267

Query: 301 DIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPL 360
              +  N L   +P     L+    ++L  N +S       +   IT        +    
Sbjct: 268 ---VYRNQLTR-LPESLIHLSSETTVNLEGNPLS-ERT-LQALREITSAPGYSGPIIRFD 321

Query: 361 RYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLR 420
             G    R +      + +                      +N       + L RL +  
Sbjct: 322 MAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA--DAFSLFLDRLSETE 379

Query: 421 LIDLSNNNIFGQIPGCLDNTSLHNN 445
              + +     QI   L   +    
Sbjct: 380 -NFIKDAGFKAQISSWLAQLAEDEA 403

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  102 bits (255), Expect = 9e-23
 Identities = 72/429 (16%), Positives = 136/429 (31%), Gaps = 103/429 (24%)

Query: 200 NSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDAN 259
           N    L++  + LT  +P+ L     ++  LV+ +N+L     S      +L +L +  N
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA---HITTLVIPDNNLT----SLPALPPELRTLEVSGN 91

Query: 260 YFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQ 319
             T  +P        L        +L    PA    L  L+   +  N L   +P+    
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLTS-LPVLPPG 142

Query: 320 LNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYN 379
           L   Q L +S+N ++ SLP+  S                            +  L    N
Sbjct: 143 L---QELSVSDNQLA-SLPALPSE---------------------------LCKLWAYNN 171

Query: 380 SFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDN 439
             +  +P      + L+ L +++N L   +P     L +L      NN +   +P     
Sbjct: 172 QLT-SLP---MLPSGLQELSVSDNQLA-SLPTLPSELYKL---WAYNNRL-TSLPALPSG 222

Query: 440 -TSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYG 498
              L  +  N  + +P     ++                                     
Sbjct: 223 LKELIVS-GNRLTSLPVLPSELKE------------------------------------ 245

Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
           + +S N+LT  +P   S L     L++  N LT  +P +  +L+   ++++  N L+ + 
Sbjct: 246 LMVSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300

Query: 559 PPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPE 618
              L E+ +   +S               +       +      L      +   A    
Sbjct: 301 LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA---ADWLVPAREGEPAPADRWH 357

Query: 619 ASNEEDGNS 627
              +ED   
Sbjct: 358 MFGQEDNAD 366

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.3 bits (185), Expect = 3e-14
 Identities = 53/267 (19%), Positives = 88/267 (32%), Gaps = 68/267 (25%)

Query: 315 LEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYG-PLRYGTFFNRSSIVT 373
           +  C  N   +L++ E+ ++ +LP C   + IT + +  N L   P           + T
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTSLPALPP------ELRT 85

Query: 374 LDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQI 433
           L++S N  +  +P     L  L        +L   +P  LC+L       +  N +   +
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKL------WIFGNQL-TSL 136

Query: 434 PGCLDN-TSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKP 492
           P        L              + N  ++  A  S + K                   
Sbjct: 137 PVLPPGLQELS------------VSDNQLASLPALPSELCK------------------- 165

Query: 493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN 552
                 +    N+LT  +P   S L     L++S N L   +P   S L     L    N
Sbjct: 166 ------LWAYNNQLT-SLPMLPSGLQE---LSVSDNQLA-SLPTLPSEL---YKLWAYNN 211

Query: 553 NLNGKIPPQLVELNALAFFSVAHNNLS 579
            L   +P     L  L    V+ N L+
Sbjct: 212 RLT-SLPALPSGLKEL---IVSGNRLT 234

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  113 bits (286), Expect = 2e-27
 Identities = 71/433 (16%), Positives = 149/433 (34%), Gaps = 82/433 (18%)

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---SL 237
           +++     +         +N+ + +   ++ +  ++P  L  S   +E L L++     +
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEI 84

Query: 238 LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWL-GNL 296
               F+       +  L++  N      P    N   L  L +  N+L  ++P  +  N 
Sbjct: 85  DTYAFAY---AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNT 140

Query: 297 SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNML 356
             L  + M++N+L+      F     LQ L LS N ++  +   S   S+   ++S N+L
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL-SLIPSLFHANVSYNLL 198

Query: 357 YGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL 416
                  T     ++  LD S+NS +  +         L  L L +NNL  +    L   
Sbjct: 199 ------STLAIPIAVEELDASHNSIN-VVR--GPVNVELTILKLQHNNLT-DTA-WLLNY 247

Query: 417 KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEES 476
             L  +DLS N +            +  +          F                    
Sbjct: 248 PGLVEVDLSYNEL----------EKIMYH---------PFVK------------------ 270

Query: 477 IMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPV 536
                           + ++  + +S N+L   +      +  ++ L+LSHN+L   +  
Sbjct: 271 ----------------MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 312

Query: 537 TFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDS 596
                +++E+L + +N++   +       + L   +++HN+         A F      +
Sbjct: 313 NQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDC--NSLRALFRNVARPA 367

Query: 597 YEGNPLLCGKPLP 609
            +     C     
Sbjct: 368 VDDADQHCKIDYQ 380

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (263), Expect = 2e-24
 Identities = 58/279 (20%), Positives = 106/279 (37%), Gaps = 35/279 (12%)

Query: 173 VYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVL 232
           +       +    +       + +     +E L+L+  Q+  EI  +       ++ L +
Sbjct: 42  ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYM 100

Query: 233 SEN---SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNI 289
             N    L   +F     +  L  L L+ N  +        N   L  L MS+NNL   I
Sbjct: 101 GFNAIRYLPPHVFQN---VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERI 156

Query: 290 PA-WLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS------- 341
                   +SL ++ ++SN L     ++   +  L   ++S N +S +L           
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-TLAIPIAVEELDA 212

Query: 342 SHSSITQV-----------HLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIE 390
           SH+SI  V            L  N L          N   +V +DLSYN     + +   
Sbjct: 213 SHNSINVVRGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFV 269

Query: 391 RLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
           ++  L  L ++NN L   + +    +  L+++DLS+N++
Sbjct: 270 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  104 bits (261), Expect = 4e-24
 Identities = 68/356 (19%), Positives = 132/356 (37%), Gaps = 52/356 (14%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           + + ++++   + +   + ++ L     +E L L+  Q +                    
Sbjct: 44  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-------------------- 82

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
                +++ +         ++ + +  + I    P    N   L  +    ++L      
Sbjct: 83  ----EIDTYAFAYAH---TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 134

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
            +  N   L TL + NN+L        Q    L  L +S N    ++ L +    P L +
Sbjct: 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL---IPSLFH 190

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL--L 238
            N+S N       S++    ++E LD SHN +   +   +      L  L L  N+L   
Sbjct: 191 ANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT 241

Query: 239 GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS 298
             L +       LV + L  N     +         LE LY+S+N L   +  +   + +
Sbjct: 242 AWLLN----YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPT 296

Query: 299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKN 354
           L  + ++ NHL   +     Q + L+ L L  N+I  +L   S+H ++  + LS N
Sbjct: 297 LKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLKL-STHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.0 bits (242), Expect = 1e-21
 Identities = 58/348 (16%), Positives = 118/348 (33%), Gaps = 50/348 (14%)

Query: 246 NYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAW-LGNLSSLYDIMM 304
            Y      +H+D               ++ + +   ++ +   +PA  L +   +  + +
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNL 76

Query: 305 ASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC--SSHSSITQVHLSKNMLYGPLRY 362
               ++      F   + +Q L +  N I   LP     +   +T + L +N L   L  
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPR 134

Query: 363 GTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLI 422
           G F N   + TL +S N+         +  T L+ L L++N L     + L  +  L   
Sbjct: 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHA 191

Query: 423 DLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTK 482
           ++S N +   +   +    L  + ++ + +    N  +                      
Sbjct: 192 NVSYNLL-STLAIPIAVEELDASHNSINVVRGPVNVELTI-------------------- 230

Query: 483 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN 542
                           + L  N LT      +     +  ++LS+N L  ++   F  + 
Sbjct: 231 ----------------LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 543 QVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFT 590
           ++E L IS N L   +      +  L    ++HN+L   +     QF 
Sbjct: 273 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.9 bits (187), Expect = 7e-15
 Identities = 49/300 (16%), Positives = 100/300 (33%), Gaps = 60/300 (20%)

Query: 289 IPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC--SSHSSI 346
           I + L      YD+ +           E   LN  +I+    + +   LP+    S   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 347 TQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLE 406
             ++L+   +   +    F    +I  L + +N+     P+  + +  L  L+L  N+L 
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 407 GEVPIQL-CRLKQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVPAFNHN 459
             +P  +     +L  + +SNNN+          T+      L +N              
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-------------- 175

Query: 460 VRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTR 519
                            +      +  S     +  ++  ++S N L+      ++    
Sbjct: 176 ----------------RL----THVDLSL----IPSLFHANVSYNLLS-----TLAIPIA 206

Query: 520 IRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLS 579
           +  L+ SHN++  V       L     L + +NNL       L+    L    +++N L 
Sbjct: 207 VEELDASHNSINVVRGPVNVEL---TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 261

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 54/260 (20%), Positives = 84/260 (32%), Gaps = 29/260 (11%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNNSKLKVFSG 59
              L  LS+  N L   I        TS++ L LS N+   +  S         L   + 
Sbjct: 140 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLS-----LIPSLFHANV 193

Query: 60  ECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFL 119
             N +        ++     +E +  S + I+            L  +    +NL     
Sbjct: 194 SYNLL-------STLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTAW 243

Query: 120 NWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLV 179
              L N   L  + L  N L      P      L+ LY+S N     + L      P L 
Sbjct: 244 ---LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLK 298

Query: 180 YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG 239
            L+LS N     +  +    + LE L L HN +   +      +   L+ L LS N    
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS---THHTLKNLTLSHNDW-- 351

Query: 240 QLFSKKNYLRKLVSLHLDAN 259
              S +   R +    +D  
Sbjct: 352 DCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 12/173 (6%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
             L +L L  N LT    ++ L++   +  + LSYN+ +      PF    +L+      
Sbjct: 226 VELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISN 281

Query: 62  NEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNW 121
           N +   +     +     L+ + LS + +     +       LE +    +++    L  
Sbjct: 282 NRLVALNLYGQPIP---TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV--TLK- 334

Query: 122 LLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVY 174
            L  +  L  L L +N         +  +     +  +    + +  LE G+ 
Sbjct: 335 -LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLC 386

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  105 bits (263), Expect = 7e-24
 Identities = 55/292 (18%), Positives = 100/292 (34%), Gaps = 47/292 (16%)

Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
             +   L L+R + + S+P ++     +  L+++ N L   +PE  A    +LE+L   +
Sbjct: 58  INQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPA----SLEYLDACD 109

Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
           N    +L +       L  L +D N  T  +P+  +    LE +   +N L   +P    
Sbjct: 110 N----RLSTLPELPASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQL-TMLPELPT 160

Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKN 354
           +L  L    + +N L   +P        L+ LD+S N +  SLP+        + H S+ 
Sbjct: 161 SLEVLS---VRNNQLTF-LPE---LPESLEALDVSTNLLE-SLPA-----VPVRNHHSEE 207

Query: 355 MLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC 414
                            +      N  + +IP  I  L     +IL +N L      +  
Sbjct: 208 TE---------------IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESL 250

Query: 415 RLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSA 466
             +  +         F    G  +                    +V   + A
Sbjct: 251 SQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.8 bits (212), Expect = 1e-17
 Identities = 61/416 (14%), Positives = 110/416 (26%), Gaps = 105/416 (25%)

Query: 191 SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFS--KKNYL 248
           SI   I +  SL   +  +N ++         +    E   L   +   +  S  K+  +
Sbjct: 2   SIMLPINNNFSLS-QNSFYNTIS-GTYADYFSAWDKWEKQALPGENR-NEAVSLLKECLI 58

Query: 249 RKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNH 308
            +   L L+    +  +P +L     +  L ++ N L  ++P    +L  L       N 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNAL-ISLPELPASLEYLD---ACDNR 111

Query: 309 LQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNR 368
           L   +P     L   + LD+  N ++  LP                     L Y      
Sbjct: 112 LST-LPELPASL---KHLDVDNNQLT-MLPE-----LPAL-----------LEY------ 144

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
                ++   N  +  +P   E  T L  L + NN L   +P     L+ L +    + N
Sbjct: 145 -----INADNNQLT-MLP---ELPTSLEVLSVRNNQLT-FLPELPESLEALDV----STN 190

Query: 429 IFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSY 488
           +   +P        H++ + +                                       
Sbjct: 191 LLESLPAVPVR--NHHSEETEIFF------------------------------------ 212

Query: 489 KGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLD 548
                          N++T  IP  I  L     + L  N L+  I  + S        D
Sbjct: 213 -----------RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP--D 258

Query: 549 ISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC 604
                +   +                            +Q     E     N    
Sbjct: 259 YHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSA 314

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.9 bits (194), Expect = 2e-15
 Identities = 55/262 (20%), Positives = 87/262 (33%), Gaps = 39/262 (14%)

Query: 79  QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNS 138
           Q   + L+   +  + P  L  Q  +  ++ + + L       L E   +L  L   +N 
Sbjct: 60  QFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALIS-----LPELPASLEYLDACDNR 111

Query: 139 LSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD 198
           LS    +P  P   L  L V  N     +P         L Y+N   N     +P     
Sbjct: 112 LS---TLPELPA-SLKHLDVDNNQLT-MLPELPA----LLEYINADNNQLT-MLPELPT- 160

Query: 199 MNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL------LGQLFSKKNYLRKLV 252
             SLE L + +NQLT  +PE       +LE L +S N L        +     +     +
Sbjct: 161 --SLEVLSVRNNQLT-FLPELPE----SLEALDVSTNLLESLPAVPVRN---HHSEETEI 210

Query: 253 SLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHL--- 309
                 N  T  IP+++ +      + + DN L   I   L   ++  D      +    
Sbjct: 211 FFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269

Query: 310 QGPIPLEFCQLNYLQILDLSEN 331
            G        L         EN
Sbjct: 270 DGQQNTLHRPLADAVTAWFPEN 291

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (254), Expect = 1e-23
 Identities = 53/291 (18%), Positives = 105/291 (36%), Gaps = 30/291 (10%)

Query: 152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQ 211
           HL  +  S    +  +P ++    P    L+L  N           ++ +L  L L +N+
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 212 LTGEIPEHLAMSCFNLEFLVLSENSLL---GQLFSKKNYLRKLVSLHLDANYFTGEIPKS 268
           ++ +I          LE L LS+N L     ++       + L  L +  N  T      
Sbjct: 88  IS-KISPGAFAPLVKLERLYLSKNQLKELPEKMP------KTLQELRVHENEITKVRKSV 140

Query: 269 LSNCSHLEGLYMSDNNLYGNI--PAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQIL 326
            +  + +  + +  N L  +         +  L  I +A  ++   IP        L  L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTEL 197

Query: 327 DLSENNISGSLPSC--SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGY 384
            L  N I+  + +      +++ ++ LS N +   +  G+  N   +  L L+ N     
Sbjct: 198 HLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-K 254

Query: 385 IPYWIERLTYLRYLILANNNLEG------EVPIQLCRLKQLRLIDLSNNNI 429
           +P  +    Y++ + L NNN+          P    +      + L +N +
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 60/370 (16%), Positives = 117/370 (31%), Gaps = 99/370 (26%)

Query: 201 SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---SLLGQLFSKKNYLRKLVSLHLD 257
            L  +  S   L  ++P+ L     +   L L  N    +    F     L+ L +L L 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKN---LKNLHTLILI 84

Query: 258 ANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEF 317
            N  +   P + +    LE LY+S N L   +P       +L ++ +  N +       F
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVF 141

Query: 318 CQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLS 377
             LN + +++L  N +  S                       +  G F     +  + ++
Sbjct: 142 NGLNQMIVVELGTNPLKSS----------------------GIENGAFQGMKKLSYIRIA 179

Query: 378 YNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCL 437
             + +  IP  +     L  L L  N +       L  L  L  + LS N+I        
Sbjct: 180 DTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-------- 228

Query: 438 DNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMY 497
             +++ N          +  +                                     + 
Sbjct: 229 --SAVDNG---------SLAN----------------------------------TPHLR 243

Query: 498 GVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGV------IPVTFSNLNQVESLDISY 551
            + L+ NKL  ++P  ++    I+ + L +NN++ +       P   +       + +  
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 552 NNLN-GKIPP 560
           N +   +I P
Sbjct: 303 NPVQYWEIQP 312

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 57/344 (16%), Positives = 114/344 (33%), Gaps = 80/344 (23%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFSG 59
               +L L  N++T  I      +L ++  L L  N+      + P  F    KL+    
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYL 107

Query: 60  ECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFL 119
             N++                         +    PK       L+ +   ++ +  +  
Sbjct: 108 SKNQL-----------------------KELPEKMPK------TLQELRVHENEIT-KVR 137

Query: 120 NWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLV 179
             +      +  + L  N L               +  +    FQG           +L 
Sbjct: 138 KSVFNGLNQMIVVELGTNPLK--------------SSGIENGAFQG---------MKKLS 174

Query: 180 YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---S 236
           Y+ ++  +   +IP  +    SL  L L  N++T ++         NL  L LS N   +
Sbjct: 175 YIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA 230

Query: 237 LLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA----- 291
           +     +       L  LHL+ N    ++P  L++  +++ +Y+ +NN+   I +     
Sbjct: 231 VDNGSLAN---TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI-SAIGSNDFCP 285

Query: 292 --WLGNLSSLYDIMMASNHLQ-GPIPLE-FCQLNYLQILDLSEN 331
             +    +S   + + SN +Q   I    F  +     + L   
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 50/322 (15%), Positives = 106/322 (32%), Gaps = 82/322 (25%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQF-QIPFSLEPFFNNSKLKVFSG 59
           + +L  L L  N+++  IS      L  +ERL+LS NQ  ++P  +              
Sbjct: 75  LKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKM-----------PKT 122

Query: 60  ECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFL 119
                               L+ + +  + I           + +  V+   + LK   +
Sbjct: 123 --------------------LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162

Query: 120 -NWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL 178
            N   +    L+ + + + +++                          IP  +    P L
Sbjct: 163 ENGAFQGMKKLSYIRIADTNIT-------------------------TIPQGL---PPSL 194

Query: 179 VYLNLSRNDFNGSIPS-SIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
             L+L  N     + + S+  +N+L  L LS N ++  +      +  +L  L L+ N L
Sbjct: 195 TELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKL 252

Query: 238 L---GQLFSKKNYLRKLVSLHLDANYFTGEIPKS-------LSNCSHLEGLYMSDNNL-Y 286
           +   G L       + +  ++L  N  +  I  +        +  +   G+ +  N + Y
Sbjct: 253 VKVPGGLAD----HKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 287 GNIPA-WLGNLSSLYDIMMASN 307
             I       +     + + + 
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 50/271 (18%), Positives = 96/271 (35%), Gaps = 53/271 (19%)

Query: 322 YLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSF 381
           +L+++  S+  +   +P          + L  N +   ++ G F N  ++ TL L  N  
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP-PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKI 88

Query: 382 SGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTS 441
           S   P     L  L  L L+ N L+ E+P ++   K L+ + +  N I        +  +
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 442 ------LHNNGDNDDSLVP-AFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLN 494
                 L  N      +   AF                                  + + 
Sbjct: 146 QMIVVELGTNPLKSSGIENGAF----------------------------------QGMK 171

Query: 495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554
           K+  + ++   +T  IP  +     +  L+L  N +T V   +   LN +  L +S+N++
Sbjct: 172 KLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228

Query: 555 NGKIPPQ-LVELNALAFFSVAHNNLSGKIPE 584
           +  +    L     L    + +N L  K+P 
Sbjct: 229 S-AVDNGSLANTPHLRELHLNNNKLV-KVPG 257

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (250), Expect = 4e-23
 Identities = 63/273 (23%), Positives = 100/273 (36%), Gaps = 32/273 (11%)

Query: 123 LENNTNLNTLVLRNNSLSGPFRMPIQPH-----WHLDTLYVSKNFFQGNIPLEIGVYFPR 177
            +   +L  LVL NN +S      I          L  LY+SKN     IP  +      
Sbjct: 74  FKGLQHLYALVLVNNKISK-----IHEKAFSPLRKLQKLYISKNHLV-EIPPNL---PSS 124

Query: 178 LVYLNLSRNDFNGSIPSSI-GDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS 236
           LV L +  N     +P  +   + ++  +++  N L     E  A     L +L +SE  
Sbjct: 125 LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 237 LLGQLFSKKNYLRKLVSLHLDANYFTGEIPK-SLSNCSHLEGLYMSDNNLYGNIPA-WLG 294
           L G     K+    L  LHLD N     I    L   S L  L +  N +   I    L 
Sbjct: 184 LTG---IPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI-RMIENGSLS 238

Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS-------GSLPSCSSHSSIT 347
            L +L ++ + +N L   +P     L  LQ++ L  NNI+         +      +   
Sbjct: 239 FLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 348 QVHLSKNML-YGPLRYGTFFNRSSIVTLDLSYN 379
            + L  N + Y  ++  TF   +  + +     
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 99.3 bits (248), Expect = 8e-23
 Identities = 60/291 (20%), Positives = 103/291 (35%), Gaps = 31/291 (10%)

Query: 152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQ 211
           HL  +  S    +  +P EI    P    L+L  ND +         +  L AL L +N+
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 212 LTGEIPEHLAMSCFNLEFLVLSEN---SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKS 268
           ++ +I E        L+ L +S+N    +   L         LV L +  N         
Sbjct: 90  IS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP------SSLVELRIHDNRIRKVPKGV 142

Query: 269 LSNCSHLEGLYMSDNNLY-GNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILD 327
            S   ++  + M  N L          +   L  + ++   L G IP +      L  L 
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELH 199

Query: 328 LSENNISGSLPSC--SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI 385
           L  N I  ++       +S + ++ L  N +   +  G+     ++  L L  N  S  +
Sbjct: 200 LDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLS-RV 256

Query: 386 PYWIERLTYLRYLILANNNLEGEVP-------IQLCRLKQLRLIDLSNNNI 429
           P  +  L  L+ + L  NN+  +V            +      I L NN +
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 76/357 (21%), Positives = 119/357 (33%), Gaps = 67/357 (18%)

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN-- 235
           L  +  S      ++P  I        LDL +N ++ E+ +       +L  LVL  N  
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 236 -SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
             +  + FS    LRKL  L++  N+   EIP +L   S L  L + DN +         
Sbjct: 91  SKIHEKAFSP---LRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFS 144

Query: 295 NLSSLYDIMMASNHLQ-GPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSK 353
            L ++  I M  N L+             L  L +SE  ++  +P      ++ ++HL  
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK-DLPETLNELHLDH 202

Query: 354 NMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQL 413
           N +   +        S +  L L +N         +  L  LR L L NN L   VP  L
Sbjct: 203 NKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260

Query: 414 CRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEK 473
             LK L+++ L  NNI          T +  N          F                 
Sbjct: 261 PDLKLLQVVYLHTNNI----------TKVGVN---------DFCPVGFGVK--------- 292

Query: 474 EESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT-GEIPPQI-SKLTRIRALNLSHN 528
                                   G+ L  N +   E+ P     +T   A+   + 
Sbjct: 293 -------------------RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.0 bits (203), Expect = 5e-17
 Identities = 64/370 (17%), Positives = 115/370 (31%), Gaps = 100/370 (27%)

Query: 201 SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---SLLGQLFSKKNYLRKLVSLHLD 257
            L  +  S   L   +P+ ++    +   L L  N    L    F     L+ L +L L 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP---DTTLLDLQNNDISELRKDDFKG---LQHLYALVLV 86

Query: 258 ANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEF 317
            N  +    K+ S    L+ LY+S N+L   IP      SSL ++ +  N ++      F
Sbjct: 87  NNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVF 143

Query: 318 CQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLS 377
             L  +  +++  N +  S                          G F     +  L +S
Sbjct: 144 SGLRNMNCIEMGGNPLENS----------------------GFEPGAFDGLK-LNYLRIS 180

Query: 378 YNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCL 437
               +  IP   +    L  L L +N ++      L R  +L  + L +N I        
Sbjct: 181 EAKLT-GIP--KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI-------- 229

Query: 438 DNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMY 497
               + N          + +                                   L  + 
Sbjct: 230 --RMIENG---------SLSF----------------------------------LPTLR 244

Query: 498 GVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN------QVESLDISY 551
            + L  NKL+  +P  +  L  ++ + L  NN+T V    F  +           + +  
Sbjct: 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 552 NNL-NGKIPP 560
           N +   ++ P
Sbjct: 304 NPVPYWEVQP 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.2 bits (201), Expect = 9e-17
 Identities = 55/344 (15%), Positives = 96/344 (27%), Gaps = 81/344 (23%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFSG 59
               +L L  N ++  +       L  +  L L  N+      +    F    KL+    
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS---KIHEKAFSPLRKLQKLYI 109

Query: 60  ECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFL 119
             N +                         I    P        L  +   D+ ++ +  
Sbjct: 110 SKNHL-----------------------VEIPPNLPS------SLVELRIHDNRIR-KVP 139

Query: 120 NWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLV 179
             +     N+N + +  N L                       F G           +L 
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLE--------------NSGFEPGAFDG----------LKLN 175

Query: 180 YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---S 236
           YL +S       IP  +    +L  L L HN++   I     +    L  L L  N    
Sbjct: 176 YLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 237 LLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA----- 291
           +     S    L  L  LHLD N  +  +P  L +   L+ +Y+  NN+   +       
Sbjct: 232 IENGSLSF---LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCP 286

Query: 292 --WLGNLSSLYDIMMASNHLQGPI--PLEFCQLNYLQILDLSEN 331
             +    +    I + +N +      P  F  +     +     
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.4 bits (178), Expect = 7e-14
 Identities = 51/266 (19%), Positives = 98/266 (36%), Gaps = 30/266 (11%)

Query: 322 YLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSF 381
           +L+++  S+  +  ++P   S    T + L  N +   LR   F     +  L L  N  
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS-PDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKI 90

Query: 382 SGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTS 441
           S         L  L+ L ++ N+L  E+P  L     L  + + +N I     G      
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 442 ------LHNNGDNDDSLVPAFNHNVRSTY-SAGSSTMEKEESIMFTTKEISFSYKGKPLN 494
                 +  N   +    P     ++  Y     + +      +  T           LN
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET-----------LN 196

Query: 495 KMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNN 553
           +++   L  NK+   I  +   + +++  L L HN +  +   + S L  +  L +  N 
Sbjct: 197 ELH---LDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

Query: 554 LNGKIPPQLVELNALAFFSVAHNNLS 579
           L+ ++P  L +L  L    +  NN++
Sbjct: 253 LS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 51/310 (16%), Positives = 103/310 (33%), Gaps = 59/310 (19%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQF-QIPFSLEPFFNNSKLKVFSG 59
           +  L  L L  N+++  I       L  +++L++S N   +IP +L            S 
Sbjct: 77  LQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNL-----------PSS 124

Query: 60  ECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFL 119
                               L  + +  + I            ++  ++   + L+    
Sbjct: 125 --------------------LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 120 NWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLV 179
                +   LN L +    L+    +P      L+ L++  N  Q  I LE  + + +L 
Sbjct: 165 EPGAFDGLKLNYLRISEAKLT---GIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLY 220

Query: 180 YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG 239
            L L  N        S+  + +L  L L +N+L+  +P  L      L+ + L  N++  
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP-DLKLLQVVYLHTNNI-- 276

Query: 240 QLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL-YGNI-PAWLGNLS 297
                           +  N F           ++  G+ + +N + Y  + PA    ++
Sbjct: 277 --------------TKVGVNDFCP--VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 298 SLYDIMMASN 307
               I   + 
Sbjct: 321 DRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 29/224 (12%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
           +SL  L +  N++   +       L ++  + +  N  +        F+  KL       
Sbjct: 123 SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 62  NEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLK----GE 117
            ++           P+  L  + L  + I A   + L     L  +    + ++    G 
Sbjct: 182 AKL----TGIPKDLPE-TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 118 FLNWLLENNTNLNTLVLRNNSLSGPFRMP--IQPHWHLDTLYVSKNFFQGNIP------L 169
                      L  L L NN LS   R+P  +     L  +Y+  N     +       +
Sbjct: 237 LSFL-----PTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPV 287

Query: 170 EIGVYFPRLVYLNLSRN--DFNGSIPSSIGDMNSLEALDLSHNQ 211
             GV       ++L  N   +    P++   +    A+   + +
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 39/213 (18%), Positives = 66/213 (30%), Gaps = 61/213 (28%)

Query: 373 TLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQ 432
            +  S       +P  I        L L NN++          L+ L  + L NN I   
Sbjct: 37  VVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI--- 90

Query: 433 IPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKP 492
                  + +H           AF+                                   
Sbjct: 91  -------SKIHEK---------AFSP---------------------------------- 100

Query: 493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN 552
           L K+  + +S N L  EIPP +   + +  L +  N +  V    FS L  +  +++  N
Sbjct: 101 LRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 553 NL-NGKIPPQLVELNALAFFSVAHNNLSGKIPE 584
            L N    P   +   L +  ++   L+  IP+
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK 189

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  101 bits (254), Expect = 4e-23
 Identities = 56/266 (21%), Positives = 91/266 (34%), Gaps = 39/266 (14%)

Query: 167 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFN 226
           +P  I        YLNL  N+       +   ++ LE L L  N +  +I         +
Sbjct: 69  VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124

Query: 227 LEFLVLSEN---SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPK-SLSNCSHLEGLYMSD 282
           L  L L +N    +    F    YL KL  L L  N     IP  + +    L  L + +
Sbjct: 125 LNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE 180

Query: 283 NNLYGNIPA-WLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS 341
                 I       L +L  + +   +++  +P     L  L+ L++S N+    +    
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP-EIRP-- 235

Query: 342 SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILA 401
                                G+F   SS+  L +  +  S       + L  L  L LA
Sbjct: 236 ---------------------GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 402 NNNLEGEVPIQLCRLKQLRLIDLSNN 427
           +NNL          L+ L  + L +N
Sbjct: 275 HNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 54/311 (17%), Positives = 109/311 (35%), Gaps = 65/311 (20%)

Query: 249 RKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNH 308
            +   +       + E+P+ +   S+   L + +NN+         +L  L  + +  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 309 LQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSH--SSITQVHLSKNMLYGPLRYGTFF 366
           ++      F  L  L  L+L +N ++  +PS +    S + ++ L  N +   +    F 
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIES-IPSYAFN 168

Query: 367 NRSSIVTLDLS-YNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLS 425
              S++ LDL              E L  L+YL L   N++ ++P  L  L  L  +++S
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMS 226

Query: 426 NNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS 485
            N+             +            +F                             
Sbjct: 227 GNHF----------PEIRPG---------SF----------------------------- 238

Query: 486 FSYKGKPLNKMYGVDLSCNKLTGEIPPQ-ISKLTRIRALNLSHNNLTGVIPVTFSNLNQV 544
                  L+ +  + +  ++++  I       L  +  LNL+HNNL+ +    F+ L  +
Sbjct: 239 -----HGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292

Query: 545 ESLDISYNNLN 555
             L + +N  N
Sbjct: 293 VELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 39/235 (16%)

Query: 200 NSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---SLLGQLFSKKNYLRKLVSLHL 256
           N    +  +   L+ E+P+ +     N  +L L EN    +    F     L  L  L L
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIPS---NTRYLNLMENNIQMIQADTFRH---LHHLEVLQL 106

Query: 257 DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA-WLGNLSSLYDIMMASNHLQGPIPL 315
             N        + +  + L  L + DN L   IP+     LS L ++ + +N ++  IP 
Sbjct: 107 GRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIES-IPS 164

Query: 316 E-FCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTL 374
             F ++  L  LDL E      +                         G F    ++  L
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISE-----------------------GAFEGLFNLKYL 201

Query: 375 DLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
           +L   +    +P     L  L  L ++ N+     P     L  L+ + + N+ +
Sbjct: 202 NLGMCNIK-DMPNL-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 58/294 (19%), Positives = 100/294 (34%), Gaps = 67/294 (22%)

Query: 323 LQILDLSENNISGSLPSC--SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNS 380
            + L+L ENNI   + +        +  + L +N +   +  G F   +S+ TL+L  N 
Sbjct: 77  TRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNW 134

Query: 381 FSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNT 440
            +       E L+ LR L L NN +E        R+  L  +DL       ++       
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK---KL------E 185

Query: 441 SLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVD 500
            +            AF                                    L  +  ++
Sbjct: 186 YISEG---------AFEG----------------------------------LFNLKYLN 202

Query: 501 LSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPP 560
           L    +     P ++ L  +  L +S N+   + P +F  L+ ++ L +  + ++  I  
Sbjct: 203 LGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIER 259

Query: 561 Q-LVELNALAFFSVAHNNLSGKIPEWT-AQFTTFKEDSYEGNPLLCGKPLPDCD 612
                L +L   ++AHNNLS  +P           E     NP  C     DCD
Sbjct: 260 NAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNC-----DCD 307

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 50/243 (20%), Positives = 86/243 (35%), Gaps = 22/243 (9%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFSG 59
           ++ R L+L  N +   I +    HL  +E L L  N  +    +E   F   + L     
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR---QIEVGAFNGLASLNTLEL 130

Query: 60  ECNEI-FVESESSHSMTPKFQLESVALSG---SGIHATFPKFLYNQHDLEYVDFSDSNLK 115
             N +  + S +   ++   +L  + L       I +     + +   L  +D  +    
Sbjct: 131 FDNWLTVIPSGAFEYLS---KLRELWLRNNPIESIPSYAFNRVPS---LMRLDLGELKKL 184

Query: 116 GEFLNWLLENNTNLNTLVLRNNSLSGPFRMP-IQPHWHLDTLYVSKNFFQGNIPLEIGVY 174
                   E   NL  L L   ++     MP + P   L+ L +S N F   I       
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFP-EIRPGSFHG 240

Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
              L  L +  +  +    ++   + SL  L+L+HN L+  +P  L      L  L L  
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHH 299

Query: 235 NSL 237
           N  
Sbjct: 300 NPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.6 bits (155), Expect = 8e-11
 Identities = 43/215 (20%), Positives = 72/215 (33%), Gaps = 20/215 (9%)

Query: 79  QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNS 138
            LE + L  + I             L  ++  D+ L     +   E  + L  L LRNN 
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNP 158

Query: 139 LSGPFRMPIQPHW-----HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIP 193
           +       I  +       L  L + +      I          L YLNL   +    +P
Sbjct: 159 IES-----IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP 212

Query: 194 SSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL---GQLFSKKNYLRK 250
           + +  +  LE L++S N    EI         +L+ L +  + +       F     L  
Sbjct: 213 N-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG---LAS 267

Query: 251 LVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL 285
           LV L+L  N  +       +   +L  L++  N  
Sbjct: 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 36/213 (16%), Positives = 64/213 (30%), Gaps = 59/213 (27%)

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
           +    +  +    S  +P  I   +  RYL L  NN++         L  L ++ L  N+
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 429 IFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSY 488
           I            +            AFN                               
Sbjct: 111 I----------RQIEVG---------AFNG------------------------------ 121

Query: 489 KGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESL 547
               L  +  ++L  N LT  IP      L+++R L L +N +  +    F+ +  +  L
Sbjct: 122 ----LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176

Query: 548 DISYNNLNGKIPPQ-LVELNALAFFSVAHNNLS 579
           D+        I       L  L + ++   N+ 
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 10/141 (7%)

Query: 1   MTSLRVLSL-DLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSG 59
           + SL  L L +L +L   IS      L +++ L L     +    +        L+    
Sbjct: 170 VPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEM 225

Query: 60  ECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFL 119
             N          S      L+ + +  S +             L  ++ + +NL    L
Sbjct: 226 SGNHF--PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL--SSL 281

Query: 120 NW-LLENNTNLNTLVLRNNSL 139
              L      L  L L +N  
Sbjct: 282 PHDLFTPLRYLVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (253), Expect = 5e-23
 Identities = 62/266 (23%), Positives = 89/266 (33%), Gaps = 39/266 (14%)

Query: 167 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFN 226
           +P  I         LNL  N       +S   +  LE L LS N +   I         N
Sbjct: 58  VPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLAN 113

Query: 227 LEFLVLSEN---SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSL-SNCSHLEGLYMSD 282
           L  L L +N   ++    F    YL KL  L L  N     IP    +    L  L + +
Sbjct: 114 LNTLELFDNRLTTIPNGAFV---YLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGE 169

Query: 283 NNLYGNIPA-WLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS 341
                 I       LS+L  + +A  +L+  IP     L  L  LDLS N++S ++    
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS-AIRP-- 224

Query: 342 SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILA 401
                                G+F     +  L +  +          + L  L  + LA
Sbjct: 225 ---------------------GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263

Query: 402 NNNLEGEVPIQLCRLKQLRLIDLSNN 427
           +NNL          L  L  I L +N
Sbjct: 264 HNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.3 bits (206), Expect = 5e-17
 Identities = 55/265 (20%), Positives = 98/265 (36%), Gaps = 48/265 (18%)

Query: 323 LQILDLSENNISGSLPSC--SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNS 380
            ++L+L EN I   +          +  + LS+N +   +  G F   +++ TL+L  N 
Sbjct: 66  TRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNR 123

Query: 381 FSGYIPYWIERLTYLRYLILANNNLEGEVPIQL-CRLKQLRLIDLSNNNIFGQIP-GCLD 438
            +         L+ L+ L L NN +E  +P     R+  LR +DL        I  G  +
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 439 N-TSLH--NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNK 495
             ++L   N    +   +P                                      L K
Sbjct: 183 GLSNLRYLNLAMCNLREIPNLTP----------------------------------LIK 208

Query: 496 MYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554
           +  +DLS N L+  I P     L  ++ L +  + +  +    F NL  +  +++++NNL
Sbjct: 209 LDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 555 NGKIPPQLVE-LNALAFFSVAHNNL 578
              +P  L   L+ L    + HN  
Sbjct: 268 T-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 50/234 (21%), Positives = 84/234 (35%), Gaps = 37/234 (15%)

Query: 200 NSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---SLLGQLFSKKNYLRKLVSLHL 256
           N    +      L  E+P+ ++    N   L L EN    +    F     LR L  L L
Sbjct: 43  NQFSKVICVRKNLR-EVPDGIST---NTRLLNLHENQIQIIKVNSFKH---LRHLEILQL 95

Query: 257 DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA-WLGNLSSLYDIMMASNHLQGPIPL 315
             N+       + +  ++L  L + DN L   IP      LS L ++ + +N ++     
Sbjct: 96  SRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIESIPSY 154

Query: 316 EFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLD 375
            F ++  L+ LDL E      +                         G F   S++  L+
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISE-----------------------GAFEGLSNLRYLN 191

Query: 376 LSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
           L+  +    IP  +  L  L  L L+ N+L    P     L  L+ + +  + I
Sbjct: 192 LAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.5 bits (165), Expect = 5e-12
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 22/243 (9%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFSG 59
           T+ R+L+L  NQ+   I  +   HL  +E L LS N  +   ++E   F   + L     
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR---TIEIGAFNGLANLNTLEL 119

Query: 60  ECNEI-FVESESSHSMTPKFQLESVALSG---SGIHATFPKFLYNQHDLEYVDFSDSNLK 115
             N +  + + +   ++   +L+ + L       I +     + +   L  +D  +    
Sbjct: 120 FDNRLTTIPNGAFVYLS---KLKELWLRNNPIESIPSYAFNRIPS---LRRLDLGELKRL 173

Query: 116 GEFLNWLLENNTNLNTLVLRNNSLSGPFRMP-IQPHWHLDTLYVSKNFFQGNIPLEIGVY 174
                   E  +NL  L L   +L     +P + P   LD L +S N     I       
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQG 229

Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
              L  L + ++       ++  ++ SL  ++L+HN LT  +P  L     +LE + L  
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHH 288

Query: 235 NSL 237
           N  
Sbjct: 289 NPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 47/215 (21%), Positives = 78/215 (36%), Gaps = 20/215 (9%)

Query: 79  QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNS 138
            LE + LS + I            +L  ++  D+ L     N      + L  L LRNN 
Sbjct: 89  HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNP 147

Query: 139 LSGPFRMPIQPHW-----HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIP 193
           +       I  +       L  L + +      I          L YLNL+  +    IP
Sbjct: 148 IES-----IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201

Query: 194 SSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL---GQLFSKKNYLRK 250
           + +  +  L+ LDLS N L+  I         +L+ L + ++ +       F     L+ 
Sbjct: 202 N-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN---LQS 256

Query: 251 LVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL 285
           LV ++L  N  T       +   HLE +++  N  
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 39/216 (18%), Positives = 70/216 (32%), Gaps = 60/216 (27%)

Query: 373 TLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQ 432
            +     +    +P  I   T  R L L  N ++         L+ L ++ LS N+I   
Sbjct: 47  KVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--- 100

Query: 433 IPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKP 492
                   ++            AFN                                   
Sbjct: 101 -------RTIEIG---------AFNG---------------------------------- 110

Query: 493 LNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISY 551
           L  +  ++L  N+LT  IP      L++++ L L +N +  +    F+ +  +  LD+  
Sbjct: 111 LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169

Query: 552 NNLNGKIPPQ-LVELNALAFFSVAHNNLSGKIPEWT 586
                 I       L+ L + ++A  NL  +IP  T
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLT 204

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 1   MTSLRVLSL-DLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSG 59
           + SLR L L +L +L+  IS      L+++  L L+    +    +       KL     
Sbjct: 159 IPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDL 214

Query: 60  ECNEI-FVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
             N +  +   S   +     L+ + +  S I         N   L  ++ + +NL    
Sbjct: 215 SGNHLSAIRPGSFQGLM---HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL--TL 269

Query: 119 LNW-LLENNTNLNTLVLRNNSL 139
           L   L     +L  + L +N  
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPW 291

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =   99 bits (249), Expect = 3e-22
 Identities = 78/449 (17%), Positives = 155/449 (34%), Gaps = 34/449 (7%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           ++ LR+L +  N++   +  S       +E L LS+N+      +        LK     
Sbjct: 44  LSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV---KI-SCHPTVNLKHLDLS 98

Query: 61  CNEIFVESESS--HSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
            N            +M+   QL+ + LS + +  +    + + +  + +         + 
Sbjct: 99  FNAFDALPICKEFGNMS---QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE 155

Query: 119 LNWLLEN--NTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIP-----LEI 171
               L++    +L+ +   N        + ++   +L+   +               L  
Sbjct: 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK 215

Query: 172 GVYFPRLVYLNLSRNDFNGSIPSSIGDM---NSLEALDLSHNQLTGEIPEHLAMSCFN-- 226
               P+L  L L+  +   +    I  +    ++    +S+ +L G++            
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275

Query: 227 --LEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNN 284
             L    +  +               +   +   +          S  S    L  S+N 
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335

Query: 285 LYGNIPAWLGNLSSLYDIMMASNHLQ--GPIPLEFCQLNYLQILDLSENNISGSLP--SC 340
           L   +    G+L+ L  +++  N L+    I     Q+  LQ LD+S+N++S       C
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 341 SSHSSITQVHLSKNML-YGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLI 399
           S   S+  +++S N+L     R         I  LDL  N     IP  + +L  L+ L 
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLP----PRIKVLDLHSNKIKS-IPKQVVKLEALQELN 450

Query: 400 LANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
           +A+N L+        RL  L+ I L  N 
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.8 bits (233), Expect = 3e-20
 Identities = 87/556 (15%), Positives = 173/556 (31%), Gaps = 97/556 (17%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
               +L++  N ++  + +S ++ L+ +  L +S+N+ Q    L+         VF    
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ---YLDI-------SVFKFNQ 69

Query: 62  NEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNW 121
                             LE + LS + +         N   L+++D S +      +  
Sbjct: 70  E-----------------LEYLDLSHNKLVKISCHPTVN---LKHLDLSFNAFDALPICK 109

Query: 122 LLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL 181
              N + L  L L    L    +  + P  HL+   V     +     E           
Sbjct: 110 EFGNMSQLKFLGLSTTHLE---KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166

Query: 182 NLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQL 241
           +L            I D++     +L  + +   + ++      ++   + +   L    
Sbjct: 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226

Query: 242 FSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYD 301
            +            L   + T     S+SN      L   D +  G       +L +L  
Sbjct: 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT------SLKALSI 280

Query: 302 IMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLR 361
             + S+    P    +   + + I + + +        C S  S                
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL------------- 327

Query: 362 YGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLE--GEVPIQLCRLKQL 419
                       LD S N  +  +      LT L  LIL  N L+   ++     ++K L
Sbjct: 328 -----------HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376

Query: 420 RLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMF 479
           + +D+S N++                  + D      +          SS          
Sbjct: 377 QQLDISQNSV------------------SYDEKKGDCSWTKSLLSLNMSSN--------- 409

Query: 480 TTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFS 539
               ++ +       ++  +DL  NK+   IP Q+ KL  ++ LN++ N L  V    F 
Sbjct: 410 ---ILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465

Query: 540 NLNQVESLDISYNNLN 555
            L  ++ + +  N  +
Sbjct: 466 RLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.8 bits (215), Expect = 5e-18
 Identities = 77/461 (16%), Positives = 155/461 (33%), Gaps = 56/461 (12%)

Query: 127 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 186
           + L  L++ +N +        + +  L+ L +S N     I          L +L+LS N
Sbjct: 45  SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFN 100

Query: 187 DFNGSIPSS--IGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSK 244
            F+ ++P     G+M+ L+ L LS   L       +A    +   LVL E     +    
Sbjct: 101 AFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE- 158

Query: 245 KNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMM 304
              L+   +  L   + T +    + + S      +  +N+   +     +         
Sbjct: 159 --GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL------ 210

Query: 305 ASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGT 364
             + L             L  ++ + N+    +     H+++    +S   L G L +  
Sbjct: 211 --SILAKLQTNPKLSNLTLNNIETTWNSFI-RILQLVWHTTVWYFSISNVKLQGQLDFRD 267

Query: 365 FF----NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLR 420
           F     +  ++    +  + F     Y  E  + +       +       +   ++    
Sbjct: 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327

Query: 421 LIDLSNNNIFGQIPGCLDN-TSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMF 479
            +D SNN +   +     + T L       + L                  + K   +  
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQL----------------KELSKIAEMT- 370

Query: 480 TTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTF 538
                        +  +  +D+S N ++ +      S    + +LN+S N LT  I    
Sbjct: 371 -----------TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 539 SNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLS 579
               +++ LD+  N +   IP Q+V+L AL   +VA N L 
Sbjct: 420 --PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 85.7 bits (212), Expect = 1e-17
 Identities = 68/421 (16%), Positives = 140/421 (33%), Gaps = 50/421 (11%)

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
           ++ S+N     +P  +        L++S N ++      +                    
Sbjct: 5   VDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELWTSDI-------------------- 41

Query: 241 LFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLY 300
                  L KL  L +  N               LE L +S N L         NL  L 
Sbjct: 42  -----LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLD 96

Query: 301 DIMMASNHLQG-PIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGP 359
              ++ N     PI  EF  ++ L+ L LS  ++  S     +H +I++V L     YG 
Sbjct: 97  ---LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE 153

Query: 360 LRYGTFFNRSSIVTLDLSY---NSFSGYIPYWIERLTYLRYLILANNNLEGEVP------ 410
                     +  +L + +     F   +   ++ +  L    +     + +        
Sbjct: 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213

Query: 411 ---IQLCRLKQLRLIDLS-NNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSA 466
                  +L  L L ++    N F +I   + +T++     ++  L    +      YS 
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD-FDYSG 272

Query: 467 GSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLS 526
            S        ++        SY  +  + M   + + +          SK++    L+ S
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332

Query: 527 HNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQ---LVELNALAFFSVAHNNLSGKIP 583
           +N LT  +     +L ++E+L +  N L  ++        ++ +L    ++ N++S    
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

Query: 584 E 584
           +
Sbjct: 392 K 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.4 bits (206), Expect = 6e-17
 Identities = 68/440 (15%), Positives = 138/440 (31%), Gaps = 61/440 (13%)

Query: 152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQ 211
               L +S+N+    +     +   +L  L +S N       S       LE LDLSHN+
Sbjct: 22  KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 212 LTGEIPEHLAMSCFNLEFLVLSENSL----LGQLFSKKNYLRKLVSLHLDANYFTGEIPK 267
           L             NL+ L LS N+     + + F     + +L  L L   +       
Sbjct: 81  LVKISCHPTV----NLKHLDLSFNAFDALPICKEFGN---MSQLKFLGLSTTHLEKSSVL 133

Query: 268 SLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILD 327
            +++ +  + L +               L       +               ++   + +
Sbjct: 134 PIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 328 LSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPY 387
           L  +NI   L        ++        +   L+     +  ++  ++ ++NSF   +  
Sbjct: 192 LELSNIKCVLEDNKCSYFLS--------ILAKLQTNPKLSNLTLNNIETTWNSFIRILQ- 242

Query: 388 WIERLTYLRYLILANNNLEG-----EVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSL 442
            +   T + Y  ++N  L+G     +       LK L +  + ++          +  S 
Sbjct: 243 -LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 443 HNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLS 502
            N  +   S     +                  S +     +               D S
Sbjct: 302 MNIKNFTVSGTRMVHMLC--------------PSKISPFLHL---------------DFS 332

Query: 503 CNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVT--FSNLNQVESLDISYNNLNGKIPP 560
            N LT  +      LT +  L L  N L  +  +    + +  ++ LDIS N+++     
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 561 QLVE-LNALAFFSVAHNNLS 579
                  +L   +++ N L+
Sbjct: 393 GDCSWTKSLLSLNMSSNILT 412

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.6 bits (241), Expect = 3e-22
 Identities = 55/269 (20%), Positives = 93/269 (34%), Gaps = 36/269 (13%)

Query: 167 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLT-GEIPEHLAMSCF 225
           +P  I         L L  N            +  L  L LS N L+             
Sbjct: 22  VPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 226 NLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSL-SNCSHLEGLYMSDNN 284
           +L++L LS N ++  + S    L +L  L    +        S+  +  +L  L +S  +
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 285 LYGNIPA-WLGNLSSLYDIMMASNHLQGPIPLE-FCQLNYLQILDLSENNISGSLPSCSS 342
                       LSSL  + MA N  Q     + F +L  L  LDLS+  +   L     
Sbjct: 138 T-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP--- 192

Query: 343 HSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILAN 402
                                 F + SS+  L++S+N+F     +  + L  L+ L  + 
Sbjct: 193 --------------------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 403 NNLEGEVPIQLCR--LKQLRLIDLSNNNI 429
           N++      Q  +     L  ++L+ N+ 
Sbjct: 233 NHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.7 bits (210), Expect = 4e-18
 Identities = 47/297 (15%), Positives = 93/297 (31%), Gaps = 61/297 (20%)

Query: 264 EIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHL--QGPIPLEFCQLN 321
            +P  +   S    L +  N L          L+ L  + ++SN L  +G          
Sbjct: 21  SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 322 YLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSF 381
            L+ LDLS N +     +      +  +    + L     +  F +  +++ LD+S+   
Sbjct: 79  SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 382 SGYIPYWIERLTYLRYLILANNN-LEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNT 440
                     L+ L  L +A N+  E  +P     L+ L  +DLS   +           
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL----------E 188

Query: 441 SLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVD 500
            L            AFN                                   L+ +  ++
Sbjct: 189 QLSPT---------AFNS----------------------------------LSSLQVLN 205

Query: 501 LSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNL-NQVESLDISYNNLN 555
           +S N     +       L  ++ L+ S N++         +  + +  L+++ N+  
Sbjct: 206 MSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 53/269 (19%), Positives = 102/269 (37%), Gaps = 49/269 (18%)

Query: 323 LQILDLSENNISGSLPSC-SSHSSITQVHLSKNMLY-GPLRYGTFFNRSSIVTLDLSYNS 380
              L+L  N +           + +T++ LS N L        + F  +S+  LDLS+N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 381 FSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR-LKQLRLIDLSNNNIFGQIPGCLDN 439
               +      L  L +L   ++NL+      +   L+ L  +D+S+ +      G  + 
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 440 TS------LHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPL 493
            S      +  N   ++ L   F                                    L
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTE----------------------------------L 174

Query: 494 NKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN 552
             +  +DLS  +L  ++ P   + L+ ++ LN+SHNN   +    +  LN ++ LD S N
Sbjct: 175 RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 553 NLNGKIPPQLVE--LNALAFFSVAHNNLS 579
           ++      Q ++   ++LAF ++  N+ +
Sbjct: 234 HIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.7 bits (192), Expect = 8e-16
 Identities = 55/291 (18%), Positives = 90/291 (30%), Gaps = 65/291 (22%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNNSKLKVFSGE 60
           +S   L L+ N+L  ++       LT + +L LS N         +  F  + LK     
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
            N +                         + + F         LE++DF  SNLK     
Sbjct: 87  FNGV-----------------------ITMSSNFLGL----EQLEHLDFQHSNLKQMSEF 119

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
            +  +  NL  L + +                          F G            L  
Sbjct: 120 SVFLSLRNLIYLDISHTHTR----------------VAFNGIFNG---------LSSLEV 154

Query: 181 LNLSRNDFNGSIPSSI-GDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG 239
           L ++ N F  +    I  ++ +L  LDLS  QL  ++      S  +L+ L +S N+   
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFS 213

Query: 240 ---QLFSKKNYLRKLVSLHLDANYFTGEIPKSL--SNCSHLEGLYMSDNNL 285
                +     L  L  L    N+      K       S L  L ++ N+ 
Sbjct: 214 LDTFPYKC---LNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 53/241 (21%), Positives = 84/241 (34%), Gaps = 35/241 (14%)

Query: 1   MTSLRVLSLDLNQLT-GNISSSPLIHLTSIERLFLSYNQFQ-IPFSLEPFFNNSKLKVFS 58
           +T L  LSL  N L+     S      TS++ L LS+N    +      F    +L+   
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS---SNFLGLEQLEHLD 107

Query: 59  GECNEIFVESESS--HSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKG 116
            + + +   SE S   S+     L  + +S +     F         LE +  + ++ + 
Sbjct: 108 FQHSNLKQMSEFSVFLSLR---NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164

Query: 117 EFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFP 176
            FL  +     NL  L L    L                  +S   F             
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLE----------------QLSPTAFNS---------LS 199

Query: 177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS 236
            L  LN+S N+F          +NSL+ LD S N +     + L     +L FL L++N 
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

Query: 237 L 237
            
Sbjct: 260 F 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 46/257 (17%), Positives = 88/257 (34%), Gaps = 32/257 (12%)

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLE--GEVPIQLCRLKQLRLIDLSN 426
           SS   L+L  N          ++LT L  L L++N L   G           L+ +DLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 427 NNIFGQIPGCLDNTS------LHNNGDNDDSLVPAFNHNVRSTY-SAGSSTMEKEESIMF 479
           N +   +                ++     S    F       Y     +      + +F
Sbjct: 88  NGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 480 TTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTF 538
                        L+ +  + ++ N       P I ++L  +  L+LS   L  + P  F
Sbjct: 147 -----------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195

Query: 539 SNLNQVESLDISYNNLNGKIPPQ-LVELNALAFFSVAHNNLSGKIPEWTAQ--FTTFKED 595
           ++L+ ++ L++S+NN    +       LN+L     + N++     +   Q   ++    
Sbjct: 196 NSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFL 253

Query: 596 SYEGNPLLCGKPLPDCD 612
           +   N   C      C+
Sbjct: 254 NLTQNDFAC-----TCE 265

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 31/216 (14%), Positives = 67/216 (31%), Gaps = 47/216 (21%)

Query: 373 TLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQ 432
            +  +    +  +P  I   +    L L +N L+        +L QL  + LS+N +  +
Sbjct: 11  EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 433 IPGCLDNTSLHN------NGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISF 486
                 +    +      + +   ++   F                              
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG---------------------------- 99

Query: 487 SYKGKPLNKMYGVDLSCNKLTGEIPPQ--ISKLTRIRALNLSHNNLTGVIPVTFSNLNQV 544
                 L ++  +D   + L  ++        L  +  L++SH +        F+ L+ +
Sbjct: 100 ------LEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152

Query: 545 ESLDISYNNLNGKIPPQ-LVELNALAFFSVAHNNLS 579
           E L ++ N+      P    EL  L F  ++   L 
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 27/140 (19%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           ++SL VL +  N    N        L ++  L LS  Q +                    
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-------------------- 188

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
                +   + +S++    L+ + +S +   +         + L+ +D+S +++      
Sbjct: 189 ----QLSPTAFNSLS---SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241

Query: 121 WLLENNTNLNTLVLRNNSLS 140
            L    ++L  L L  N  +
Sbjct: 242 ELQHFPSSLAFLNLTQNDFA 261

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.5 bits (238), Expect = 6e-21
 Identities = 70/422 (16%), Positives = 146/422 (34%), Gaps = 51/422 (12%)

Query: 161 NFFQGNIPLEIGVYFP--RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPE 218
           N  +         +FP         +  +   +   S   + +L +LD  ++ +T ++  
Sbjct: 1   NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG 59

Query: 219 HLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGL 278
              ++   L  L+ + N++     S+      L  L  D+N  T  +   ++  + L  L
Sbjct: 60  IEKLT--GLTKLICTSNNITTLDLSQ---NTNLTYLACDSNKLT-NLD--VTPLTKLTYL 111

Query: 279 YMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLP 338
               N L     +    L+ L     A N L     ++      L  LD   N    +  
Sbjct: 112 NCDTNKLTKLDVSQNPLLTYLN---CARNTLT---EIDVSHNTQLTELDCHLNKKI-TKL 164

Query: 339 SCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYL 398
             +  + +T +  S N     +          +  L+   N+ +  +   + +   L +L
Sbjct: 165 DVTPQTQLTTLDCSFN----KITELDVSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFL 217

Query: 399 ILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDN-TSLHNNGDNDDSLVPAFN 457
             ++N L     I +  L QL   D S N +       L   T+LH    +   +    N
Sbjct: 218 DCSSNKLTE---IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN 274

Query: 458 HNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKL 517
             +    + G              KE+  ++      ++Y +D     +T E+   +S+ 
Sbjct: 275 TQLIYFQAEGCR----------KIKELDVTH----NTQLYLLDCQAAGIT-ELD--LSQN 317

Query: 518 TRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNN 577
            ++  L L++  LT  + V  S+  +++SL     ++       + ++ AL     A   
Sbjct: 318 PKLVYLYLNNTELT-ELDV--SHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQ 372

Query: 578 LS 579
             
Sbjct: 373 TI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.4 bits (217), Expect = 2e-18
 Identities = 64/349 (18%), Positives = 117/349 (33%), Gaps = 52/349 (14%)

Query: 123 LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN 182
           +E  T L  L+  +N+++    + +  + +L  L    N    N+ +       +L YLN
Sbjct: 60  IEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLT-NLDVT---PLTKLTYLN 112

Query: 183 LSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLF 242
              N         +     L  L+ + N LT EI          L  L    N  + +L 
Sbjct: 113 CDTNKLT---KLDVSQNPLLTYLNCARNTLT-EIDVS---HNTQLTELDCHLNKKITKLD 165

Query: 243 SKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDI 302
                  +L +L    N  T      +S    L  L    NN+   +   L     L  +
Sbjct: 166 VTP--QTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFL 217

Query: 303 MMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNML------ 356
             +SN L     ++   L  L   D S N ++  L   S+ S +T +H  +  L      
Sbjct: 218 DCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELDV-STLSKLTTLHCIQTDLLEIDLT 272

Query: 357 ------------YGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNN 404
                          ++     + + +  LD      +  +   + +   L YL L N  
Sbjct: 273 HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTE 329

Query: 405 LEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLV 453
           L     + +    +L+ +   N +I           +L+NN + +   +
Sbjct: 330 LTE---LDVSHNTKLKSLSCVNAHI-QDFSSVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 81/489 (16%), Positives = 151/489 (30%), Gaps = 76/489 (15%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           + +L  L    + +T     + +  LT + +L  + N             N+ L   + +
Sbjct: 41  LATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACD 93

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
            N++     ++  +TP  +L  +    + +             L Y++ + + L      
Sbjct: 94  SNKL-----TNLDVTPLTKLTYLNCDTNKLTKLDVSQNPL---LTYLNCARNTLT----E 141

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
             + +NT L  L    N       + + P   L TL  S N     + +        L  
Sbjct: 142 IDVSHNTQLTELDCHLNKKITK--LDVTPQTQLTTLDCSFNKIT-ELDVS---QNKLLNR 195

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
           LN   N+    +   +     L  LD S N+LT EI          L +   S N L   
Sbjct: 196 LNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EIDVT---PLTQLTYFDCSVNPLTEL 248

Query: 241 LFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLY 300
             S    L KL +LH        EI   L++ + L             +   + + + LY
Sbjct: 249 DVST---LSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLY 300

Query: 301 DIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPL 360
            +   +  +     L+  Q   L  L L+   ++  L             +S N      
Sbjct: 301 LLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD------------VSHN------ 338

Query: 361 RYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLR 420
                   + + +L         +    + ++  L     A       +P +      L 
Sbjct: 339 --------TKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTI-TMPKETLTNNSL- 386

Query: 421 LIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFT 480
            I +S + +     G   N    + G  D +       N+ +   A + T   E   +  
Sbjct: 387 TIAVSPDLL--DQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVG 444

Query: 481 TKEISFSYK 489
           T    F   
Sbjct: 445 TVTTPFEAP 453

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 93.7 bits (233), Expect = 2e-20
 Identities = 79/434 (18%), Positives = 152/434 (35%), Gaps = 71/434 (16%)

Query: 191 SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQL----FSKKN 246
            +P+ +        +DLS N +  E+ E       +L+FL + + +    +    F    
Sbjct: 27  ELPAHV------NYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG-- 77

Query: 247 YLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNI--PAWLGNLSSLYDIMM 304
            L  L+ L LD N F      + +  ++LE L ++  NL G +    +   L+SL  +++
Sbjct: 78  -LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

Query: 305 ASNHLQGPIPLE-FCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYG-PLRY 362
             N+++   P   F  +    +LDL+ N +                 + +  L     ++
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVK---------------SICEEDLLNFQGKH 181

Query: 363 GTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQL-RL 421
            T    SSI   D++             + T +  L L+ N  +  +  +        ++
Sbjct: 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

Query: 422 IDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPA------FNHNVRSTYSAGSSTMEKEE 475
             L  +N +              +      L  +       + +                
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV------- 294

Query: 476 SIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVI 534
                     FS+       +  + L+ N++  +I       LT +  LNLS N L  + 
Sbjct: 295 ----------FSH----FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSID 339

Query: 535 PVTFSNLNQVESLDISYNNLNGKIPPQL-VELNALAFFSVAHNNLSGKIPEWTAQFTTFK 593
              F NL+++E LD+SYN++   +  Q  + L  L   ++  N L   +P+    F    
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGI--FDRLT 395

Query: 594 EDSY---EGNPLLC 604
                    NP  C
Sbjct: 396 SLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.1 bits (229), Expect = 8e-20
 Identities = 67/413 (16%), Positives = 138/413 (33%), Gaps = 91/413 (22%)

Query: 176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN 235
             + Y++LS N       +S   +  L+ L +        I  +      +L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 236 SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNI--PAWL 293
                         + + L             + +  ++LE L ++  NL G +    + 
Sbjct: 90  --------------QFLQLE----------TGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125

Query: 294 GNLSSLYDIMMASNHLQGPIPLE-FCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLS 352
             L+SL  +++  N+++   P   F  +    +LDL+ N +                 + 
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK---------------SIC 170

Query: 353 KNMLYG-PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPI 411
           +  L     ++ T    SSI   D++             + T +  L L+ N  +  +  
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 412 QLCRL---KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGS 468
           +        +++ + LSN+   G   G  +     N                        
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF----------------------- 267

Query: 469 STMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSH 527
                             ++KG   + +   DLS +K+   +   + S  T +  L L+ 
Sbjct: 268 ------------------TFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQ 308

Query: 528 NNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQL-VELNALAFFSVAHNNLS 579
           N +  +    F  L  +  L++S N L G I  ++   L+ L    +++N++ 
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.3 bits (214), Expect = 5e-18
 Identities = 58/362 (16%), Positives = 110/362 (30%), Gaps = 56/362 (15%)

Query: 85  LSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFR 144
           LS + I            DL+++            N      ++L  L L  N       
Sbjct: 37  LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL---- 92

Query: 145 MPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS-IPSSI-GDMNSL 202
                        +    F G            L  L L++ + +G+ +  +    + SL
Sbjct: 93  ------------QLETGAFNG---------LANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131

Query: 203 EALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL----------LGQLFSKKNYLRKLV 252
           E L L  N +    P    ++      L L+ N +                    L  + 
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 253 SLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGP 312
              ++  +   E   +    + +  L +S N    ++     +  +   I          
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS-------- 243

Query: 313 IPLEFCQLNYLQILDLSENNISGSLPSCSSH----SSITQVHLSKNMLYGPLRYGTFFNR 368
                   +Y         N      + +      S +    LSK+ +   L    F + 
Sbjct: 244 ---LILSNSYNMGSSFGHTNFK-DPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHF 298

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR-LKQLRLIDLSNN 427
           + +  L L+ N  +         LT+L  L L+ N L G +  ++   L +L ++DLS N
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYN 357

Query: 428 NI 429
           +I
Sbjct: 358 HI 359

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 71/404 (17%), Positives = 125/404 (30%), Gaps = 72/404 (17%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFS 58
           +  L+ L ++       I ++    L+S+  L L YNQF     LE   F   + L+V +
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL---QLETGAFNGLANLEVLT 109

Query: 59  GECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
                                L+   LS       F         LE +   D+N+K   
Sbjct: 110 LTQC----------------NLDGAVLS----GNFFKPL----TSLEMLVLRDNNIKKIQ 145

Query: 119 LNWLLENNTNLNTLVLRNNSLS----GPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVY 174
                 N    + L L  N +                H   L +S               
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK--HFTLLRLSSIT------------ 191

Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPE------------HLAM 222
                  +++          +     S+  LDLS N     + +             L +
Sbjct: 192 -----LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 223 SCFNLEFLVLSENSL--LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYM 280
           S            +         K      + +  L  +     +    S+ + LE L +
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306

Query: 281 SDNNLYGNIPAW-LGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPS 339
           + N +   I       L+ L  + ++ N L       F  L+ L++LDLS N+I  +L  
Sbjct: 307 AQNEI-NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGD 364

Query: 340 CSSH--SSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSF 381
            S     ++ ++ L  N L   +  G F   +S+  + L  N +
Sbjct: 365 QSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 407

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 86/447 (19%), Positives = 156/447 (34%), Gaps = 34/447 (7%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
           + LRVL L  N++  ++     +    +E L +S+N+ Q   ++      + L+      
Sbjct: 76  SELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ---NI-SCCPMASLRHLDLSF 130

Query: 62  NEIFVESESS--HSMTPKFQLESVALSGSGIHA-TFPKFLYNQHDLEYVDFSDSNLKGEF 118
           N+  V        ++T   +L  + LS +           +       +D    ++KG  
Sbjct: 131 NDFDVLPVCKEFGNLT---KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGE 187

Query: 119 LNWLLENNTNLNTLVLRNNSL-SGPFRMPIQPHWHLDTLYVSKNFFQGN---IPLEIGVY 174
              L   NT +  LV   NSL S    M +    HL    +  N          L     
Sbjct: 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247

Query: 175 FPRLVYLNLSRNDFNGSIPSSIG---DMNSLEALDLSHNQLTGEIPEHLAMSCFN----L 227
            P L+ + L   +        +        +E L++ +  +T  I              L
Sbjct: 248 GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307

Query: 228 EFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYG 287
               +     L    +  +   ++    L  +           + S    L  + N    
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367

Query: 288 NIPAWLGNLSSLYDIMMASNHLQ--GPIPLEFCQLNYLQILDLSENNISGSLPS--CSSH 343
           ++      L  L  +++  N L+    + L    ++ L+ LD+S N+++       C+  
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427

Query: 344 SSITQVHLSKNMLYGPLRYGTFFNR--SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILA 401
            SI  ++LS NML      G+ F      +  LDL  N     IP  +  L  L+ L +A
Sbjct: 428 ESILVLNLSSNML-----TGSVFRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVA 481

Query: 402 NNNLEGEVPIQLCRLKQLRLIDLSNNN 428
           +N L+        RL  L+ I L +N 
Sbjct: 482 SNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.1 bits (187), Expect = 1e-14
 Identities = 65/387 (16%), Positives = 117/387 (30%), Gaps = 44/387 (11%)

Query: 180 YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG 239
            ++ S  +    +P  +      +AL LS N ++ E+          L  L LS N    
Sbjct: 35  MVDYSNRNLT-HVPKDL--PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHN---- 86

Query: 240 QLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSL 299
                     ++ SL                    LE L +S N L  NI      ++SL
Sbjct: 87  ----------RIRSLDFHV----------FLFNQDLEYLDVSHNRL-QNISC--CPMASL 123

Query: 300 YDIMMASNHLQG-PIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYG 358
             + ++ N     P+  EF  L  L  L LS            +H  ++ + L     + 
Sbjct: 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 359 PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQL----- 413
                      +   L L ++  S +       +  L +L L+N  L  E   +L     
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 414 -----CRLKQLRLIDLSNN-NIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAG 467
                  L  + L  +        ++        +      + ++    +     TYS  
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE-EFTYSET 302

Query: 468 SSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSH 527
           +      E +       S         +M    LS +             +    LN + 
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362

Query: 528 NNLTGVIPVTFSNLNQVESLDISYNNL 554
           N  T  +    S L ++++L +  N L
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGL 389

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 81/464 (17%), Positives = 146/464 (31%), Gaps = 66/464 (14%)

Query: 127 TNLNTLVLRNNSLS----GPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN 182
           + L  L L +N +       F      +  L+ L VS N  Q NI          L +L+
Sbjct: 76  SELRVLRLSHNRIRSLDFHVF----LFNQDLEYLDVSHNRLQ-NISCCP---MASLRHLD 127

Query: 183 LSRNDFNGSIPSS--IGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
           LS NDF+  +P     G++  L  L LS  +        +A    +   L L    + G 
Sbjct: 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 241 LFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLY 300
              +   +     LHL  +  +    +   + + L  L +S+  L         N  +  
Sbjct: 187 ET-ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL---------NDENCQ 236

Query: 301 DIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSL-PSCSSHSSITQVHLSKNMLYGP 359
            +M   + L     L    L +++        +     P    + +I  + +++ +    
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296

Query: 360 LRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQL 419
             Y +     S++   +    F             +   +L+ ++      +        
Sbjct: 297 FTY-SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355

Query: 420 RLIDLSNNNI---FGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEES 476
             ++ + N       Q    L          N                            
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF---------------------- 393

Query: 477 IMFTTKEISFSYKGKPLNKMYGVDLSCNKLT-GEIPPQISKLTRIRALNLSHNNLTGVIP 535
                     +   K ++ +  +D+S N L         +    I  LNLS N LTG + 
Sbjct: 394 --------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV- 444

Query: 536 VTFSNL-NQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNL 578
             F  L  +V+ LD+  N +   IP  +  L AL   +VA N L
Sbjct: 445 --FRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 89.4 bits (222), Expect = 2e-19
 Identities = 53/282 (18%), Positives = 102/282 (36%), Gaps = 29/282 (10%)

Query: 153 LDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-GDMNSLEALDLSHNQ 211
           + +L +S N     I          L  L L+ N  N +I       + SLE LDLS+N 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 212 LTGEIPEHLAMSCFNLEFLVLSENSLL----GQLFSKKNYLRKLVSLHLDANYFTGEIP- 266
           L+  +         +L FL L  N         LFS    L KL  L +       +I  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH---LTKLQILRVGNMDTFTKIQR 167

Query: 267 KSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQIL 326
           K  +  + LE L +  ++L    P  L ++ ++  +++        + +     + ++ L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 327 DLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIP 386
           +L + ++          S ++                +   + +   + ++  S    + 
Sbjct: 228 ELRDTDLDT-----FHFSELS-----------TGETNSLIKKFTFRNVKITDESLF-QVM 270

Query: 387 YWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
             + +++ L  L  + N L+        RL  L+ I L  N 
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 24/254 (9%)

Query: 191 SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---SLLGQLFSKKNY 247
           SIPS + +  ++++LDLS+N++T  I       C NL+ LVL+ N   ++    FS    
Sbjct: 45  SIPSGLTE--AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSS--- 98

Query: 248 LRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA-WLGNLSSLYDIMMAS 306
           L  L  L L  NY +          S L  L +  N            +L+ L  + + +
Sbjct: 99  LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 307 NHLQGPIPLE-FCQLNYLQILDLSENNISGSLP--SCSSHSSITQVHLSKNMLYGPLRYG 363
                 I  + F  L +L+ L++  +++  S    S  S  +++ + L        L   
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHIL-LLEI 216

Query: 364 TFFNRSSIVTLDLSYNSFSGYIPYWIE--------RLTYLRYLILANNNLEGEVPIQLCR 415
                SS+  L+L       +    +         +    R + + + +L  +V   L +
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQ 275

Query: 416 LKQLRLIDLSNNNI 429
           +  L  ++ S N +
Sbjct: 276 ISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 47/310 (15%), Positives = 104/310 (33%), Gaps = 54/310 (17%)

Query: 251 LVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA-WLGNLSSLYDIMMASNHL 309
           + SL L  N  T      L  C +L+ L ++ N +   I      +L SL  + ++ N+L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 310 QGPIPLE-FCQLNYLQILDLSENNISGSLPSCSSHSSITQ---VHLSKNMLYGPLRYGTF 365
              +    F  L+ L  L+L  N    +L   S  S +T+   + +     +  ++   F
Sbjct: 113 SN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 366 FNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLS 425
              + +  L++  +    Y P  ++ +  + +LIL        + I +     +  ++L 
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 426 NNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS 485
           + +             L     ++ S                        +         
Sbjct: 231 DTD-------------LDTFHFSELS------------------------TGETN----- 248

Query: 486 FSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVE 545
                        V ++   L  ++   +++++ +  L  S N L  V    F  L  ++
Sbjct: 249 ---SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304

Query: 546 SLDISYNNLN 555
            + +  N  +
Sbjct: 305 KIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 37/269 (13%)

Query: 309 LQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNR 368
            +          +   I   S  +++ S+PS  +  ++  + LS N +   +        
Sbjct: 19  KEESSNQASLSCDRNGICKGSSGSLN-SIPSGLT-EAVKSLDLSNNRI-TYISNSDLQRC 75

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR-LKQLRLIDLSNN 427
            ++  L L+ N  +         L  L +L L+ N L   +     + L  L  ++L  N
Sbjct: 76  VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGN 134

Query: 428 NIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFS 487
                        +L                ++          M+    I    +   F+
Sbjct: 135 PY----------KTLGETS---------LFSHLTKLQILRVGNMDTFTKI----QRKDFA 171

Query: 488 YKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVES 546
                L  +  +++  + L     P+    +  +  L L       ++ +     + VE 
Sbjct: 172 ----GLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 547 LDISYNNLNGKIPPQLVELNALAFFSVAH 575
           L++   +L+        EL+     S+  
Sbjct: 227 LELRDTDLDT---FHFSELSTGETNSLIK 252

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 41/246 (16%), Positives = 76/246 (30%), Gaps = 16/246 (6%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFS 58
             +L+ L L  N +   I       L S+E L LSYN      +L    F   S L   +
Sbjct: 75  CVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS---NLSSSWFKPLSSLTFLN 130

Query: 59  GECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
              N      E+S              +         K       LE ++   S+L+  +
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SY 189

Query: 119 LNWLLENNTNLNTLVLRNNSLS----GPFRMPIQPHW-HLDTLYVSKNFFQG--NIPLEI 171
               L++  N++ L+L              +        L    +    F          
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 172 GVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLV 231
            +       + ++       +   +  ++ L  L+ S NQL   +P+ +     +L+ + 
Sbjct: 250 LIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIW 307

Query: 232 LSENSL 237
           L  N  
Sbjct: 308 LHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 44/298 (14%), Positives = 93/298 (31%), Gaps = 48/298 (16%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFSG 59
            +++ L L  N++T  IS+S L    +++ L L+ N      ++E   F +   L+    
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDL 107

Query: 60  ECNEI-FVESESSHSMTPKFQLESVALSGSGIHATFPK-FLYNQHDLEYVDFSDSNLKGE 117
             N +  + S     ++    L  + L G+            +   L+ +   + +   +
Sbjct: 108 SYNYLSNLSSSWFKPLS---SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164

Query: 118 FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
                    T L  L +  + L                        +             
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQ----------------SYEPKSLKS---------IQN 199

Query: 178 LVYLNLSRNDFNGSIPSSIGD-MNSLEALDLSHNQLTGEIPEHLAMSCFN-------LEF 229
           + +L L        +     D  +S+E L+L    L       L+    N          
Sbjct: 200 VSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258

Query: 230 LVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKS-LSNCSHLEGLYMSDNNLY 286
           + +++ SL  Q+    N +  L+ L    N     +P       + L+ +++  N   
Sbjct: 259 VKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 500 DLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
            L+ N +   I     S L  +  L+LS+N L+ +    F  L+ +  L++  N     +
Sbjct: 82  VLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TL 139

Query: 559 PPQLV--ELNALAFFSVAHNNLSGKIPE 584
               +   L  L    V + +   KI  
Sbjct: 140 GETSLFSHLTKLQILRVGNMDTFTKIQR 167

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
              S   L   IP  ++    +++L+LS+N +T +          +++L ++ N +N  I
Sbjct: 36  CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TI 91

Query: 559 PPQL-VELNALAFFSVAHNNLS 579
                  L +L    +++N LS
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLS 113

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.4 bits (219), Expect = 3e-19
 Identities = 46/268 (17%), Positives = 82/268 (30%), Gaps = 30/268 (11%)

Query: 100 NQHDLEYVDFSDSNLKGEFLNWLLE--NNTNLNTLVLRNNSLSGPFRMPIQP--HWHLDT 155
               L+ +    + +    L   L     + L  L L N  ++G    P+       L+ 
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 156 LYVSKNFFQGNIPLEIGVYF---PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQL 212
           L +    +         +     P L  L++++          +    +L  LDLS N  
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 213 TGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNC 272
            GE                L       +  +    L+ L   +      +G      +  
Sbjct: 186 LGERG--------------LISALCPLKFPT----LQVLALRNAGMETPSGVCSALAAAR 227

Query: 273 SHLEGLYMSDNNLYGNIPAWL-GNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSEN 331
             L+GL +S N+L     A      S L  + ++   L+    +       L +LDLS N
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ---VPKGLPAKLSVLDLSYN 284

Query: 332 NISGSLPSCSSHSSITQVHLSKNMLYGP 359
            +    PS      +  + L  N     
Sbjct: 285 RLD-RNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.5 bits (214), Expect = 1e-18
 Identities = 55/300 (18%), Positives = 92/300 (30%), Gaps = 41/300 (13%)

Query: 122 LLENNTNLNTLVLRNNSLSGPFRMP-IQPHWHLDTLYVSKNFFQGNIPLEI--GVYFPRL 178
           L     +L  L+ R ++ +   +   I     L  L V        I       +    L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 179 VYLNLSRNDFNGSIPSSIGD--MNSLEALDLSHNQLTGEIPEHLAMSCF---NLEFLVLS 233
             L L   +  G+ P  + +     L  L+L +            +  +    L+ L ++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 234 ENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNC----SHLEGLYMSDNNLYGNI 289
           +   L     +      L +L L  N   GE     + C      L+ L + +  +    
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM---- 213

Query: 290 PAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLP--SCSSHSSIT 347
                                G           LQ LDLS N++  +    SC   S + 
Sbjct: 214 -----------------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 348 QVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEG 407
            ++LS   L   +  G     + +  LDLSYN      P   + L  +  L L  N    
Sbjct: 257 SLNLSFTGLKQ-VPKGLP---AKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 6e-15
 Identities = 52/300 (17%), Positives = 90/300 (30%), Gaps = 39/300 (13%)

Query: 292 WLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS----SHSSIT 347
           + G  S  Y +             +  +   L+ L +    I   +   +      S + 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 348 QVHLSKNMLYGPLRYGTFFNR-SSIVTLDLSYNSFSGYIPYWIERL-----TYLRYLILA 401
           ++ L    + G             +  L+L   S++     W+  L       L+ L +A
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIA 157

Query: 402 NNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVR 461
             +       Q+     L  +DLS+N   G+    L +            L         
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--LISALCPLKFPTLQVLALRNAGM-- 213

Query: 462 STYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRI 520
                   T     S +                ++ G+DLS N L            +++
Sbjct: 214 -------ETPSGVCSALAAA-----------RVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 521 RALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG 580
            +LNLS   L  V     + L     LD+SYN L+    P   EL  +   S+  N    
Sbjct: 256 NSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 8e-15
 Identities = 58/295 (19%), Positives = 88/295 (29%), Gaps = 42/295 (14%)

Query: 3   SLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQF--QIPFSLEPFFNNSKLKVFSGE 60
           SL  L   ++        + +I   S++RL +   +   +I F        S L+  +  
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT-- 101

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
                              LE++ ++G+      P       DL  ++  + +       
Sbjct: 102 -------------------LENLEVTGTAP---PPLLEATGPDLNILNLRNVSWAT-RDA 138

Query: 121 WLLE----NNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLE---IGV 173
           WL E        L  L +            ++    L TL +S N   G   L      +
Sbjct: 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198

Query: 174 YFPRLVYLNLSRNDFN---GSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFL 230
            FP L  L L         G   +       L+ LDLSHN L              L  L
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258

Query: 231 VLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL 285
            LS    L Q+   K    KL  L L  N      P        +  L +  N  
Sbjct: 259 NLSFTG-LKQVP--KGLPAKLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 3e-10
 Identities = 37/242 (15%), Positives = 72/242 (29%), Gaps = 30/242 (12%)

Query: 3   SLRVLSLDLNQLTGNISSSPLIHL--TSIERLFLSYNQFQIPFSLEPF-FNNSKLKVFSG 59
           SL+ L++   ++   I    L  L  + ++ L L   +                L + + 
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 60  ECNEIFVESESSHSMTPKFQ--LESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGE 117
                         +    +  L+ ++++ +       + +     L  +D SD+   GE
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 118 --FLNWLLENN-TNLNTLVLRNN---SLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEI 171
              ++ L       L  L LRN    + SG           L  L +S N  +       
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 172 GVYFPRLVYLNLSRNDFN---GSIPSS----------------IGDMNSLEALDLSHNQL 212
             +  +L  LNLS          +P+                   ++  +  L L  N  
Sbjct: 249 CDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308

Query: 213 TG 214
             
Sbjct: 309 LD 310

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.6 bits (224), Expect = 4e-19
 Identities = 53/392 (13%), Positives = 114/392 (29%), Gaps = 23/392 (5%)

Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
           F   +  NL +     ++     ++NS++ +  +++ +   + + +     N+  L L+ 
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFLNG 74

Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
           N L          L+ L  L LD N    ++  SL +   L+ L +  N +  +I   L 
Sbjct: 75  NKL--TDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGI-SDING-LV 128

Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKN 354
           +L  L  + + +N +     L   +L  L  L L +N IS  +   +  + +  ++LSKN
Sbjct: 129 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 185

Query: 355 MLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC 414
            +             ++  L+L               L     +   + +L     I   
Sbjct: 186 HI---SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242

Query: 415 RLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKE 474
              +   +         ++                             T S        +
Sbjct: 243 GDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIK 302

Query: 475 ESIMFTTKEISFSYKGK------PLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHN 528
             +   T+  +     K                  N  T  +      L  +     +  
Sbjct: 303 TKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEK 362

Query: 529 NLTGVIPVTFSNLNQVESLDISYNNLNGKIPP 560
            +     V +   N         +N   +   
Sbjct: 363 TVNLTRYVKYIRGNAGIYKLPREDNSLKQGTL 394

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.8 bits (152), Expect = 2e-10
 Identities = 45/289 (15%), Positives = 88/289 (30%), Gaps = 77/289 (26%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
                  +L    +T    +     L SI+++  + +  +   S++       +      
Sbjct: 20  FAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 73

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSD---SNLKGE 117
            N++         + P                     L N  +L ++   +    +L   
Sbjct: 74  GNKL-------TDIKP---------------------LTNLKNLGWLFLDENKIKDLSS- 104

Query: 118 FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
                L++   L +L L +N +S      I    HL                      P+
Sbjct: 105 -----LKDLKKLKSLSLEHNGISD-----INGLVHL----------------------PQ 132

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
           L  L L  N    +  + +  +  L+ L L  NQ++ +I          L+ L LS+N +
Sbjct: 133 LESLYLGNN--KITDITVLSRLTKLDTLSLEDNQIS-DIVPL--AGLTKLQNLYLSKNHI 187

Query: 238 LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY 286
                     L+ L  L L +     +     SN      +  +D +L 
Sbjct: 188 --SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.9 bits (147), Expect = 8e-10
 Identities = 44/274 (16%), Positives = 101/274 (36%), Gaps = 55/274 (20%)

Query: 299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLY- 357
           + + +  S  ++   P +          +L + +++    + +  +SI Q+  + + +  
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIKS 57

Query: 358 -GPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL 416
              ++Y       ++  L L+ N  +   P  +  L  L +L L  N ++      L  L
Sbjct: 58  VQGIQYLP-----NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDL 108

Query: 417 KQLRLIDLSNNNIFGQIPGCLDNTSLH--NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKE 474
           K+L+ + L +N I   I G +    L     G+N  + +   +                 
Sbjct: 109 KKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDITVLSR---------------- 151

Query: 475 ESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVI 534
                             L K+  + L  N+++ +I P ++ LT+++ L LS N+++ + 
Sbjct: 152 ------------------LTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDLR 191

Query: 535 PVTFSNLNQVESLDISYNNLNGKIPPQLVELNAL 568
               + L  ++ L++       K       L   
Sbjct: 192 A--LAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 7e-19
 Identities = 54/245 (22%), Positives = 87/245 (35%), Gaps = 39/245 (15%)

Query: 167 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFN 226
           +P+ I         + L  N  +    +S     +L  L L  N L   I          
Sbjct: 26  VPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 227 LEFLVLSENSLLGQL----FSKKNYLRKLVSLHLDANYFTGEIPK-SLSNCSHLEGLYMS 281
           LE L LS+N+ L  +    F     L +L +LHLD      E+        + L+ LY+ 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHG---LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 282 DNNLYGNIPA-WLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC 340
           DN L   +P     +L +L  + +  N +       F  L+ L  L L +N ++  +   
Sbjct: 138 DNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHP- 194

Query: 341 SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLIL 400
                                   F +   ++TL L  N+ S      +  L  L+YL L
Sbjct: 195 ----------------------HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 401 ANNNL 405
            +N  
Sbjct: 233 NDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 54/231 (23%), Positives = 79/231 (34%), Gaps = 29/231 (12%)

Query: 123 LENNTNLNTLVLRNNSLSGPFRMPIQPHW-----HLDTLYVSKNFFQGNIPLEIGVYFPR 177
                NL  L L +N L+      I          L+ L +S N    ++         R
Sbjct: 52  FRACRNLTILWLHSNVLAR-----IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106

Query: 178 LVYLNLSRNDFNGSIPSSI-GDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN- 235
           L  L+L R      +   +   + +L+ L L  N L   +P+       NL  L L  N 
Sbjct: 107 LHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNR 164

Query: 236 --SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAW- 292
             S+  + F     L  L  L L  N      P +  +   L  LY+  NNL   +P   
Sbjct: 165 ISSVPERAFRG---LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEA 220

Query: 293 LGNLSSLYDIMMASNHLQGPIPLE-FCQLNYLQILDLSENNISGSLPSCSS 342
           L  L +L  + +  N      P    C+   L    L +   S S   CS 
Sbjct: 221 LAPLRALQYLRLNDN------PWVCDCRARPLW-AWLQKFRGSSSEVPCSL 264

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 51/262 (19%), Positives = 91/262 (34%), Gaps = 64/262 (24%)

Query: 323 LQILDLSENNISGSLPSCSSH--SSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNS 380
            Q + L  N IS  +P+ S     ++T + L  N+L   +    F   + +  LDLS N+
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNA 91

Query: 381 FSGYIP-YWIERLTYLRYLILANNNLEGEVPIQ-LCRLKQLRLIDLSNNNIFGQIPGCLD 438
               +       L  L  L L    L+ E+       L  L+ + L +N +         
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL--------- 141

Query: 439 NTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYG 498
             +L ++          F                                    L  +  
Sbjct: 142 -QALPDD---------TFRD----------------------------------LGNLTH 157

Query: 499 VDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGK 557
           + L  N+++  +P +    L  +  L L  N +  V P  F +L ++ +L +  NNL+  
Sbjct: 158 LFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-A 215

Query: 558 IPPQ-LVELNALAFFSVAHNNL 578
           +P + L  L AL +  +  N  
Sbjct: 216 LPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 42/241 (17%), Positives = 84/241 (34%), Gaps = 40/241 (16%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFSG 59
            + + + L  N+++ ++ ++      ++  L+L  N       ++   F   + L+    
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA---RIDAAAFTGLALLEQLDL 87

Query: 60  ECNEI--FVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGE 117
             N     V+  + H +    +L ++ L   G+    P        L+Y+   D+ L+  
Sbjct: 88  SDNAQLRSVDPATFHGLG---RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-A 143

Query: 118 FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
             +    +  NL  L L  N +S                 V +  F+G            
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRIS----------------SVPERAFRG---------LHS 178

Query: 178 LVYLNLSRNDFNGSIPSSI-GDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS 236
           L  L L +N     +      D+  L  L L  N L+  +P         L++L L++N 
Sbjct: 179 LDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNP 236

Query: 237 L 237
            
Sbjct: 237 W 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 36/213 (16%), Positives = 66/213 (30%), Gaps = 56/213 (26%)

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
           ++   + L  N  S            L  L L +N L          L  L  +DLS+N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 429 IFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSY 488
              Q+       S+             F+                               
Sbjct: 92  ---QL------RSVDPA---------TFHG------------------------------ 103

Query: 489 KGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESL 547
               L +++ + L    L  E+ P +   L  ++ L L  N L  +   TF +L  +  L
Sbjct: 104 ----LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158

Query: 548 DISYNNLNGKIPPQ-LVELNALAFFSVAHNNLS 579
            +  N ++  +P +    L++L    +  N ++
Sbjct: 159 FLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 5/86 (5%)

Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
                  L   +P  I   ++   + L  N ++ V   +F     +  L +  N L  +I
Sbjct: 16  TSCPQQGLQ-AVPVGIPAASQR--IFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARI 71

Query: 559 PPQ-LVELNALAFFSVAHNNLSGKIP 583
                  L  L    ++ N     + 
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVD 97

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.8 bits (213), Expect = 8e-18
 Identities = 80/486 (16%), Positives = 142/486 (29%), Gaps = 107/486 (22%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFF----NNSKLKVF 57
             ++ L +   +L+    +  L  L   + + L           +        N  L   
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALA-- 59

Query: 58  SGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGE 117
                              +  L S  L   G+H            ++ +   +  L G 
Sbjct: 60  -------------------ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100

Query: 118 ---FLNWLLENNTNLNTLVLRNNSLSGP-----FRMPIQPHWHLDTLYVSKNFFQGNIPL 169
               L+  L     L  L L +N L            + P   L+ L +       ++  
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC----SLSA 156

Query: 170 EIGVYF-------PRLVYLNLSRNDFNGSIPSSIGDM-----NSLEALDLSHNQLTGEIP 217
                        P    L +S ND N +    +          LEAL L    +T +  
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216

Query: 218 EHLA---MSCFNLEFLVLSENSL-------LGQLFSKKNYLRKLVSLHLDANYFTGE--- 264
             L     S  +L  L L  N L       L       +   +L +L +     T +   
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS--SRLRTLWIWECGITAKGCG 274

Query: 265 -IPKSLSNCSHLEGLYMSDNNLYGNIPAWLGN--LSSLYDIMMASNHLQGPIPLEFCQLN 321
            + + L     L+ L ++ N         LG+     L + ++             CQ  
Sbjct: 275 DLCRVLRAKESLKELSLAGNE--------LGDEGARLLCETLLEPG----------CQ-- 314

Query: 322 YLQILDLSENNISG----SLPSC-SSHSSITQVHLSKNMLYGP----LRYGTFFNRSSIV 372
            L+ L +   + +        S  + +  + ++ +S N L       L  G     S + 
Sbjct: 315 -LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373

Query: 373 TLDLSYNSFS----GYIPYWIERLTYLRYLILANNNLEGEVPIQLCR-LKQ----LRLID 423
            L L+    S      +   +     LR L L+NN L     +QL   ++Q    L  + 
Sbjct: 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 433

Query: 424 LSNNNI 429
           L +   
Sbjct: 434 LYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.1 bits (180), Expect = 9e-14
 Identities = 59/347 (17%), Positives = 109/347 (31%), Gaps = 66/347 (19%)

Query: 126 NTNLNTLVLRNNSLSGPFRMPIQPHW-HLDTLYVSKNFFQGNIPLEIGVYF---PRLVYL 181
           + ++ +L ++   LS      + P       + +           +I       P L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 182 NLSRNDFNGSIPSSIGDM-----NSLEALDLSHNQLTGEIPEHLA---MSCFNLEFLVLS 233
           NL  N+        +          ++ L L +  LTG     L+    +   L+ L LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 234 ENSL-------LGQLFSKKNYLRKLVSLHLDANYFTGE----IPKSLSNCSHLEGLYMSD 282
           +N L       L +         +L  L L+    +      +   L      + L +S+
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQC--RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 283 NNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC-- 340
           N++       L          +  +  Q            L+ L L    ++    +C  
Sbjct: 180 NDINEAGVRVLCQ-------GLKDSPCQ------------LEALKLESCGVTSD--NCRD 218

Query: 341 -----SSHSSITQVHLSKNMLYGP----LRYGTFFNRSSIVTLDLSYNSFS----GYIPY 387
                +S +S+ ++ L  N L       L  G     S + TL +     +    G +  
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278

Query: 388 WIERLTYLRYLILANNNLEGEVPIQLCRL-----KQLRLIDLSNNNI 429
            +     L+ L LA N L  E    LC        QL  + + + + 
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 64/385 (16%), Positives = 116/385 (30%), Gaps = 81/385 (21%)

Query: 2   TSLRVLSLDLNQLT----GNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFF-----NNS 52
             ++ LSL    LT    G +SS+ L  L +++ L LS N       L+           
Sbjct: 85  CKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNLLG-DAGLQLLCEGLLDPQC 142

Query: 53  KLKVFSGECNEIFVES--------ESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDL 104
           +L+    E   +   S         +      +  + +  ++ +G+         +   L
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFK-ELTVSNNDINEAGVRVLCQGLKDSPCQL 201

Query: 105 EYVDFSDSNLKGE---FLNWLLENNTNLNTLVLRNNSLSGP-----FRMPIQPHWHLDTL 156
           E +      +  +    L  ++ +  +L  L L +N L            + P   L TL
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 157 YVSKNFFQGNIPLEIGVYF--------PRLVYLNLSRNDFNGSIPSSIGDM-----NSLE 203
           ++ +           G             L  L+L+ N+        + +        LE
Sbjct: 262 WIWECGIT-----AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316

Query: 204 ALDLSHNQLTGEIPEHLA---MSCFNLEFLVLSENSL-------LGQLFSKKNYLRKLVS 253
           +L +     T     H +        L  L +S N L       L Q   +      L  
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG--SVLRV 374

Query: 254 LHLDANYFTGE----IPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHL 309
           L L     +      +  +L     L  L +S+N L                I+     +
Sbjct: 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL------------GDAGILQLVESV 422

Query: 310 QGPIPLEFCQLNYLQILDLSENNIS 334
           + P  L       L+ L L +   S
Sbjct: 423 RQPGCL-------LEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.1 bits (149), Expect = 5e-10
 Identities = 60/418 (14%), Positives = 129/418 (30%), Gaps = 81/418 (19%)

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNS-LEALDLSHNQLTGEIPEHLA---MSCFNLEFLVLS 233
           +  L++   + + +  + +  +    + + L    LT    + ++        L  L L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 234 ENSL-------LGQLFSKKNYLRKLVSLHLDANYFTGE----IPKSLSNCSHLEGLYMSD 282
            N L       + Q     +   K+  L L     TG     +  +L     L+ L++SD
Sbjct: 65  SNELGDVGVHCVLQGLQTPS--CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 283 NNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSS 342
           N L          L  L + ++          LE  QL Y  +   S   ++  L +   
Sbjct: 123 NLLGD------AGLQLLCEGLLDPQ-----CRLEKLQLEYCSLSAASCEPLASVLRAKPD 171

Query: 343 HSSITQVHLSKNMLYGP----LRYGTFFNRSSIVTLDLSYNSFS----GYIPYWIERLTY 394
                ++ +S N +       L  G   +   +  L L     +      +   +     
Sbjct: 172 ---FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 228

Query: 395 LRYLILANNNLEGEVPIQLCR-----LKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDND 449
           LR L L +N L      +LC        +LR + +                 +   G  D
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-------------GITAKGCGD 275

Query: 450 DSLVPAFNHNVR----STYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK 505
              V     +++    +    G              + +  +   +P  ++  + +    
Sbjct: 276 LCRVLRAKESLKELSLAGNELGDEGA----------RLLCETLL-EPGCQLESLWVKSCS 324

Query: 506 LTGE----IPPQISKLTRIRALNLSHNNLT--GVIPVTF---SNLNQVESLDISYNNL 554
            T          +++   +  L +S+N L   GV  +        + +  L ++  ++
Sbjct: 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 59/386 (15%), Positives = 120/386 (31%), Gaps = 91/386 (23%)

Query: 199 MN-SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLD 257
           M+  +++LD+   +L+      L       + + L +  L       +   + + S    
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL------TEARCKDISSA--- 51

Query: 258 ANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGN--LSSLYDIMMASNHLQGPIPL 315
                      L     L  L +  N L        G+  +  +   +   +        
Sbjct: 52  -----------LRVNPALAELNLRSNEL--------GDVGVHCVLQGLQTPS-------- 84

Query: 316 EFCQLNYLQILDLSENNIS----GSLPSC-SSHSSITQVHLSKNMLYGP----LRYGTFF 366
                  +Q L L    ++    G L S   +  ++ ++HLS N+L       L  G   
Sbjct: 85  -----CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139

Query: 367 NRSSIVTLDLSYNSFS----GYIPYWIERLTYLRYLILANNNLEGEVPIQLCR-LK---- 417
            +  +  L L Y S S      +   +      + L ++NN++       LC+ LK    
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC 199

Query: 418 QLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESI 477
           QL  + L +  +      C D             L             A  S    +  +
Sbjct: 200 QLEALKLESCGVTSD--NCRD-------------LCGIVASKASLRELALGSNKLGDVGM 244

Query: 478 MFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE----IPPQISKLTRIRALNLSHNNLT-- 531
                E+       P +++  + +    +T +    +   +     ++ L+L+ N L   
Sbjct: 245 ----AELCPGLL-HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 532 GVIPVT---FSNLNQVESLDISYNNL 554
           G   +         Q+ESL +   + 
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 42/251 (16%), Positives = 73/251 (29%), Gaps = 34/251 (13%)

Query: 3   SLRVLSLDLNQLT----GNISSSPLIHLTSIERLFLSYNQFQ----IPFSLEPFFNNSKL 54
            L  L L+   +T     ++    +    S+  L L  N+                +S+L
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258

Query: 55  KVFSGECNEIFVES--------ESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEY 106
           +        I  +          +  S+  +  L    L   G        L     LE 
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLK-ELSLAGNELGDEGARLLCETLLEPGCQLES 317

Query: 107 VDFSDSNLKGE---FLNWLLENNTNLNTLVLRNNSLSGP-----FRMPIQPHWHLDTLYV 158
           +     +         + +L  N  L  L + NN L         +   QP   L  L++
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377

Query: 159 SKNFF--QGNIPL-EIGVYFPRLVYLNLSRNDFNGS----IPSSIGDMNS-LEALDLSHN 210
           +           L    +    L  L+LS N    +    +  S+      LE L L   
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437

Query: 211 QLTGEIPEHLA 221
             + E+ + L 
Sbjct: 438 YWSEEMEDRLQ 448

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 49/278 (17%), Positives = 97/278 (34%), Gaps = 44/278 (15%)

Query: 152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQ 211
           +   +   K+     +          +  L+        +I   +  +N+L  L+L  NQ
Sbjct: 20  NAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQ 74

Query: 212 LTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSN 271
           +T ++     ++   +  L LS N L  +  S    L+ + +L L +   T   P  L+ 
Sbjct: 75  IT-DLAPLKNLT--KITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAG 127

Query: 272 CSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSEN 331
            S+L+ LY+  N +  NI   L  L++L  + + +  +    PL    L+ L  L   +N
Sbjct: 128 LSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDN 183

Query: 332 NISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIER 391
            IS  +   +S  ++                           + L  N  S   P  +  
Sbjct: 184 KIS-DISPLASLPNLI-------------------------EVHLKNNQISDVSP--LAN 215

Query: 392 LTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
            + L  + L N  +  +       L    ++   +   
Sbjct: 216 TSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 46/315 (14%), Positives = 96/315 (30%), Gaps = 78/315 (24%)

Query: 248 LRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASN 307
           L   + +    +  T  +    ++   +  L      +   I   +  L++L  + +  N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLELKDN 73

Query: 308 HLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFN 367
            +    PL+   L  +  L+LS N +           +++                    
Sbjct: 74  QITDLAPLK--NLTKITELELSGNPLK----------NVS----------------AIAG 105

Query: 368 RSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNN 427
             SI TLDL+    +   P  +  L+ L+ L L  N +    P  L  L  L+ + + N 
Sbjct: 106 LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA 161

Query: 428 NIFGQIPGCLDNTSLH--NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS 485
            +   +    + + L      DN  S +                                
Sbjct: 162 QV-SDLTPLANLSKLTTLKADDNKISDISPLAS--------------------------- 193

Query: 486 FSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVE 545
                  L  +  V L  N+++   P  ++  + +  + L++  +T       +NL    
Sbjct: 194 -------LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLV--- 241

Query: 546 SLDISYNNLNGKIPP 560
             ++        I P
Sbjct: 242 VPNVVKGPSGAPIAP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 49/298 (16%), Positives = 107/298 (35%), Gaps = 34/298 (11%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           + +   ++   + +T    +     L  I  L           ++E     + L     +
Sbjct: 18  LANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
            N+I   +   + +T   ++  + LSG+ +       +     ++ +D + + +      
Sbjct: 72  DNQITDLAPLKN-LT---KITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD---V 122

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
             L   +NL  L L  N ++     P+    +L  L +         PL       +L  
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTPLA---NLSKLTT 177

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
           L    N  +  I S +  + +L  + L +NQ++   P     +  NL  + L+  ++  Q
Sbjct: 178 LKADDNKIS-DI-SPLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQ 232

Query: 241 LFSKKNYLRKLVSLHLDANYFTGEI-PKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS 297
                 Y   LV  ++        I P ++S+         +  NL  N+ +++ N+S
Sbjct: 233 ---PVFYNNNLVVPNVVKGPSGAPIAPATISD-----NGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 35/212 (16%), Positives = 85/212 (40%), Gaps = 25/212 (11%)

Query: 370 SIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
           + + +    ++ +  +      L  +  L      +     +Q   L  L  ++L +N I
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQI 75

Query: 430 FGQIPGCLDNTSLH--NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFS 487
              +    + T +       N    V A             + ++  +++  T+ +I+  
Sbjct: 76  -TDLAPLKNLTKITELELSGNPLKNVSAI------------AGLQSIKTLDLTSTQITDV 122

Query: 488 YKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESL 547
                L+ +  + L  N++T  I P ++ LT ++ L++ +  ++ + P   +NL+++ +L
Sbjct: 123 TPLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 548 DISYNNLNGKIPPQLVELNALAFFSVAHNNLS 579
               N ++  I P L  L  L    + +N +S
Sbjct: 179 KADDNKIS-DISP-LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 34/252 (13%), Positives = 94/252 (37%), Gaps = 27/252 (10%)

Query: 319 QLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSY 378
            L     +   ++N++    + +    IT +      +            ++++ L+L  
Sbjct: 17  ALANAIKIAAGKSNVT-DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 379 NSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLD 438
           N  +   P  ++ LT +  L L+ N L+      +  L+ ++ +DL++  I   +     
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQI-TDVTPLAG 127

Query: 439 NTSLH--NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKM 496
            ++L       N  + +               + +   + +     ++S       L+K+
Sbjct: 128 LSNLQVLYLDLNQITNISPL------------AGLTNLQYLSIGNAQVSDLTPLANLSKL 175

Query: 497 YGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNG 556
             +    NK++ +I P ++ L  +  ++L +N ++ V P   +N + +  + ++   +  
Sbjct: 176 TTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231

Query: 557 KIPPQLVELNAL 568
           +       L   
Sbjct: 232 QPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 23/193 (11%)

Query: 389 IERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLH--NNG 446
              L     +    +N+   V      L  +  +      +   I G     +L      
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELK 71

Query: 447 DNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKL 506
           DN  + +    +            + K   +  +   +        L  +  +DL+  ++
Sbjct: 72  DNQITDLAPLKN------------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 507 TGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELN 566
           T ++ P ++ L+ ++ L L  N +T + P   + L  ++ L I    ++  + P L  L+
Sbjct: 120 T-DVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP-LANLS 173

Query: 567 ALAFFSVAHNNLS 579
            L       N +S
Sbjct: 174 KLTTLKADDNKIS 186

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.3 bits (180), Expect = 4e-14
 Identities = 55/255 (21%), Positives = 98/255 (38%), Gaps = 20/255 (7%)

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
                +     IPS +    +   L     +L   I +       +LE + +S+N +L  
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 241 L----FSKKNYLRKLVSLHL-DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA-WLG 294
           +    FS    L KL  + +  AN      P++  N  +L+ L +S+  +  ++P     
Sbjct: 70  IEADVFSN---LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKI 125

Query: 295 NLSSLYDIMMASN-HLQGPIPLEFCQL-NYLQILDLSENNISGSLPSCSSHSSITQVHLS 352
           +      + +  N ++       F  L     IL L++N I     S  + + + +++LS
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185

Query: 353 KNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQ 412
            N     L    F   S  V LD+S         Y +E L  LR    +  NL+ ++P  
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLK-KLPT- 241

Query: 413 LCRLKQLRLIDLSNN 427
           L +L  L    L+  
Sbjct: 242 LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.7 bits (155), Expect = 5e-11
 Identities = 45/266 (16%), Positives = 78/266 (29%), Gaps = 39/266 (14%)

Query: 201 SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---SLLGQLFSKKNYLRKLVSLHLD 257
           S        +++T EIP  L     N   L         +    FS       L  + + 
Sbjct: 10  SNRVFLCQESKVT-EIPSDLPR---NAIELRFVLTKLRVIQKGAFSG---FGDLEKIEIS 62

Query: 258 ANYFTGEIPKS-LSNCSHLEGLYMSDNNLYGNIPA-WLGNLSSLYDIMMASNHLQGPIPL 315
            N     I     SN   L  + +   N    I      NL +L  +++++  ++    +
Sbjct: 63  QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122

Query: 316 EFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFN-RSSIVTL 374
                    +LD+ +N    ++                          +F       V L
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIER-----------------------NSFVGLSFESVIL 159

Query: 375 DLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQ-LCRLKQLRLIDLSNNNIFGQI 433
            L+ N     I       T L  L L++NN   E+P           ++D+S   I    
Sbjct: 160 WLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218

Query: 434 PGCLDN-TSLHNNGDNDDSLVPAFNH 458
              L+N   L      +   +P    
Sbjct: 219 SYGLENLKKLRARSTYNLKKLPTLEK 244

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 41/263 (15%), Positives = 82/263 (31%), Gaps = 44/263 (16%)

Query: 127 TNLNTLVLRNNSLSGPFRMPIQPH-----WHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL 181
            N   L      L       IQ         L+ + +S+N     I  ++    P+L  +
Sbjct: 30  RNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84

Query: 182 NLSRNDFNGSIPSSI-GDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
            + + +    I      ++ +L+ L +S+  +   +P+   +       L + +N  +  
Sbjct: 85  RIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHT 143

Query: 241 LFSK--KNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA-WLGNLS 297
           +          + V L L+ N    EI  S  N + L+ L +SDNN    +P       S
Sbjct: 144 IERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202

Query: 298 SLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLY 357
               + ++   +          L  L+            LP+                  
Sbjct: 203 GPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT------------------ 241

Query: 358 GPLRYGTFFNRSSIVTLDLSYNS 380
                       +++   L+Y S
Sbjct: 242 -------LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 33/249 (13%), Positives = 71/249 (28%), Gaps = 50/249 (20%)

Query: 323 LQILDLSENNISGSLPSC--SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNS 380
              L      +   +     S    + ++ +S+N +   +    F N   +  + +   +
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 381 FSGYIPYWI-ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIP----- 434
              YI     + L  L+YL+++N  ++    +      Q  L+D+ +N     I      
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 435 GCLDNTSLHNNGDNDDSLVP--AFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKP 492
           G    + +     N    +   AFN                                   
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNG---------------------------------- 176

Query: 493 LNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISY 551
                      N L  E+P  +    +    L++S   +  +      NL ++ +     
Sbjct: 177 TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS--- 232

Query: 552 NNLNGKIPP 560
                K+P 
Sbjct: 233 TYNLKKLPT 241

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 50/267 (18%)

Query: 314 PLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVT 373
               C  +  ++    E+ ++  +PS     +  ++      L   ++ G F     +  
Sbjct: 3   HHRICHCS-NRVFLCQESKVT-EIPS-DLPRNAIELRFVLTKLRV-IQKGAFSGFGDLEK 58

Query: 374 LDLSYNSFSGYIPYWI-ERLTYLRYLILANNNLEGEVPIQLCR-LKQLRLIDLSNNNIFG 431
           +++S N     I   +   L  L  + +   N    +  +  + L  L+ + +SN  I  
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-K 117

Query: 432 QIP-----GCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISF 486
            +P       L    L    + +   +                               SF
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERN----------------------------SF 149

Query: 487 SYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNN-LTGVIPVTFSNLNQVE 545
                    ++   L+ N +  EI       T++  LNLS NN L  +    F   +   
Sbjct: 150 VGLSFESVILW---LNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 546 SLDISYNNLNGKIPPQ----LVELNAL 568
            LDIS   ++  +P      L +L A 
Sbjct: 206 ILDISRTRIH-SLPSYGLENLKKLRAR 231

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 43/264 (16%), Positives = 83/264 (31%), Gaps = 41/264 (15%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKV-FSGE 60
            +   L   L +L   I          +E++ +S N        + F N  KL      +
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 61  CNEI-FVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFL 119
            N + ++  E+  ++     L+ + +S +GI         +      +D  D N+    +
Sbjct: 89  ANNLLYINPEAFQNLP---NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD-NINIHTI 144

Query: 120 --NWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
             N  +  +     L L  N +                  +  + F G           +
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQ----------------EIHNSAFNG----------TQ 178

Query: 178 LVYLNLSRNDFNGSIPSSI-GDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS 236
           L  LNLS N+    +P+ +    +    LD+S  ++   +P +   +   L         
Sbjct: 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

Query: 237 LLGQLFSKKNYLRKLVSLHLDANY 260
            L  L      L  L+   L    
Sbjct: 238 KLPTLEK----LVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
                +K+T EIP  +        L      L  +    FS    +E ++IS N++   I
Sbjct: 14  FLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 559 PPQ-LVELNALAFFSVAHNN 577
                  L  L    +   N
Sbjct: 71  EADVFSNLPKLHEIRIEKAN 90

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 500 DLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPV-TFSNLNQVESLDISYNNLNGK 557
                KL   I     S    +  + +S N++  VI    FSNL ++  + I   N    
Sbjct: 36  RFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94

Query: 558 IPPQ-LVELNALAFFSVAHNNLSGKIPEWT 586
           I P+    L  L +  +++  +   +P+  
Sbjct: 95  INPEAFQNLPNLQYLLISNTGIK-HLPDVH 123

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 59/246 (23%), Positives = 92/246 (37%), Gaps = 41/246 (16%)

Query: 191 SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---SLLGQLFSKKNY 247
            IP ++    S + LDLS N L   +  +   S   L+ L LS     ++    +     
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS--- 74

Query: 248 LRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWL-GNLSSLYDIMMAS 306
           L  L +L L  N        + S  S L+ L   + NL  ++  +  G+L +L ++ +A 
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAH 133

Query: 307 NHLQG-PIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTF 365
           N +Q   +P  F  L  L+ LDLS N I  S+                            
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC-----------------------TDL 169

Query: 366 FN----RSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRL 421
                     ++LDLS N  + +I     +   L+ L L  N L+        RL  L+ 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQK 228

Query: 422 IDLSNN 427
           I L  N
Sbjct: 229 IWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 26/211 (12%)

Query: 253 SLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA----WLGNLSSLYDIMMASNH 308
           +L L  N        S  +   L+ L +S   +   I       L +LS+L    +  N 
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLI---LTGNP 87

Query: 309 LQGPIPLE-FCQLNYLQILDLSENNISGSLPSCSSH--SSITQVHLSKNMLYGPLRYGTF 365
           +Q  + L  F  L+ LQ L   E N++ SL +       ++ +++++ N++        F
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 366 FNRSSIVTLDLSYNSFSGYIPYWI-ERLTYLRY----LILANNNLEGEVPIQLCRLKQLR 420
            N +++  LDLS N     I       L  +      L L+ N +   +     +  +L+
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLK 203

Query: 421 LIDLSNNNIFGQIPGCLDNTS------LHNN 445
            + L  N +     G  D  +      LH N
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 20/194 (10%)

Query: 125 NNTNLNTLVLRNNSLS----GPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
           +   L  L L    +     G +    Q   HL TL ++ N  Q ++ L        L  
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 104

Query: 181 LNLSRNDFNGSIPSSI-GDMNSLEALDLSHNQLTGEIPEHLA-MSCFNLEFLVLSEN--- 235
           L     +   S+ +   G + +L+ L+++HN +           +  NLE L LS N   
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 236 SLLGQLFSKKNYLRKL-VSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA-WL 293
           S+        + +  L +SL L  N     I         L+ L +  N L  ++P    
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL-KSVPDGIF 220

Query: 294 GNLSSLYDIMMASN 307
             L+SL  I + +N
Sbjct: 221 DRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 58/268 (21%), Positives = 92/268 (34%), Gaps = 61/268 (22%)

Query: 288 NIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPS--CSSHSS 345
           N+P    +  +L    ++ N L+      F     LQ+LDLS   I  ++      S S 
Sbjct: 25  NLPF---STKNLD---LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405
           ++ + L+ N +   L  G F   SS+  L     + +    + I  L  L+ L +A+N +
Sbjct: 78  LSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 406 -EGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTY 464
              ++P     L  L  +DLS+N I       L    LH     + SL            
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV--LHQMPLLNLSL------------ 182

Query: 465 SAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALN 524
                                              DLS N +   I P   K  R++ L 
Sbjct: 183 -----------------------------------DLSLNPMN-FIQPGAFKEIRLKELA 206

Query: 525 LSHNNLTGVIPVTFSNLNQVESLDISYN 552
           L  N L  V    F  L  ++ + +  N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 56/277 (20%), Positives = 85/277 (30%), Gaps = 89/277 (32%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFSG 59
            S + L L  N L  ++ S        ++ L LS  + Q   ++E   + + S L     
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLIL 83

Query: 60  ECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFL 119
             N                 ++S+A         F                 S L     
Sbjct: 84  TGN----------------PIQSLA------LGAF-----------------SGL----- 99

Query: 120 NWLLENNTNLNTLVLRNNSL----SGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYF 175
                  ++L  LV    +L    + P          L  L V+ N  Q +  L     F
Sbjct: 100 -------SSLQKLVAVETNLASLENFPIGHLKT----LKELNVAHNLIQ-SFKLP-EY-F 145

Query: 176 PRLV---YLNLSRNDFNGSIPSSIGDMNSLEAL-------DLSHNQLTGEIPEHLAMSCF 225
             L    +L+LS N    SI     D+  L  +       DLS N +   I    A    
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYC--TDLRVLHQMPLLNLSLDLSLNPMN-FIQPG-AFKEI 200

Query: 226 NLEFLVLSEN---SLLGQLFSKKNYLRKLVSLHLDAN 259
            L+ L L  N   S+   +F   + L  L  + L  N
Sbjct: 201 RLKELALDTNQLKSVPDGIF---DRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 45/227 (19%), Positives = 68/227 (29%), Gaps = 57/227 (25%)

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL---EGEVPIQLCRLKQLRLIDLS 425
            S   LDLS+N       Y       L+ L L+   +   E      L  L  L    L+
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL---ILT 84

Query: 426 NN-------NIFGQIPGCLDNTSLHNNGDNDDSLVP-AFNHNVRSTYSAGSSTMEKEESI 477
            N         F      L          N  SL      H                   
Sbjct: 85  GNPIQSLALGAFSG-LSSLQKLVAVET--NLASLENFPIGH------------------- 122

Query: 478 MFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPV 536
                          L  +  ++++ N +     P+  S LT +  L+LS N +  +   
Sbjct: 123 ---------------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 537 TFSNLNQVE----SLDISYNNLNGKIPPQLVELNALAFFSVAHNNLS 579
               L+Q+     SLD+S N +N  I P   +   L   ++  N L 
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK 213

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 49/286 (17%), Positives = 96/286 (33%), Gaps = 61/286 (21%)

Query: 201 SLEALDLSHNQLTGEIPEHLA---MSCFNLEFLVLSENSL-------LGQLFSKKNYLRK 250
           S+E   L  + +T E  + +    +   +++ +VLS N++       L +  + K  L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 251 LVSLHLDANYFTGEIP-------KSLSNCSHLEGLYMSDNNLYGN----IPAWLGNLSSL 299
                +       EIP       ++L  C  L  + +SDN         +  +L   + L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 300 YDIMMASNH------------LQGPIPLEFCQLN-YLQILDLSENNI--------SGSLP 338
             + + +N             LQ     +  +    L+ +    N +        + +  
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF- 183

Query: 339 SCSSHSSITQVHLSKNMLY-----GPLRYGTFFNRSSIVTLDLSYNSFSG----YIPYWI 389
              SH  +  V + +N +        L  G  +    +  LDL  N+F+      +   +
Sbjct: 184 --QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIAL 240

Query: 390 ERLTYLRYLILANNNL--EGEVPI----QLCRLKQLRLIDLSNNNI 429
           +    LR L L +  L   G   +           L+ + L  N I
Sbjct: 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 50/293 (17%), Positives = 95/293 (32%), Gaps = 64/293 (21%)

Query: 123 LENNTNLNTLVLRNNSLSGPFRMPI----QPHWHLDTLYVSKNFFQGNIPLEIG------ 172
           L  + ++  +VL  N++       +         L+    S  F  G +  EI       
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-GRVKDEIPEALRLL 86

Query: 173 ----VYFPRLVYLNLSRNDFNG----SIPSSIGDMNSLEALDLSHNQLTGE--------- 215
               +  P+L  + LS N F       +   +     LE L L +N L  +         
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 146

Query: 216 ---IPEHLAMSCFNLEFLVLSENSL-------LGQLFSKKNYLRKLVSLHLDANYFTGE- 264
                   A +   L  ++   N L         + F + +  R L ++ +  N    E 
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF-QSH--RLLHTVKMVQNGIRPEG 203

Query: 265 ----IPKSLSNCSHLEGLYMSDNNLYGNIPAW-----LGNLSSLYDIMMASNHL--QGPI 313
               + + L+ C  L+ L + DN    ++ +      L +  +L ++ +    L  +G  
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTF-THLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262

Query: 314 P----LEFCQLNYLQILDLSENNISG----SLPSC--SSHSSITQVHLSKNML 356
                    +   LQ L L  N I      +L +        +  + L+ N  
Sbjct: 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 54/331 (16%), Positives = 91/331 (27%), Gaps = 68/331 (20%)

Query: 3   SLRVLSLDLNQLTGN---ISSSPLIHLTSIERLFLSYNQF------QIPFSLEPFFNNSK 53
           S+   SL L+ +T        + L+   S++ + LS N         +  ++    +   
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA---SKKD 61

Query: 54  LKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSN 113
           L++                                 +       L     L  V  SD+ 
Sbjct: 62  LEIAEFSDIFT---------------GRVKDEIPEALRLLLQALLKCPK-LHTVRLSDNA 105

Query: 114 LKGEFLNWL---LENNTNLNTLVLRNNSLS-------------GPFRMPIQPHWHLDTLY 157
                   L   L  +T L  L L NN L                     +    L ++ 
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165

Query: 158 VSKNFFQGNIPLEIGVYF---PRLVYLNLSRNDFN-----GSIPSSIGDMNSLEALDLSH 209
             +N  +     E    F     L  + + +N          +   +     L+ LDL  
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225

Query: 210 NQLTGEIPEHLA---MSCFNLEFLVLSENSL-------LGQLFSKKNYLRKLVSLHLDAN 259
           N  T      LA    S  NL  L L++  L       +   F  K     L +L L  N
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF-SKLENIGLQTLRLQYN 284

Query: 260 YFTGE----IPKSL-SNCSHLEGLYMSDNNL 285
               +    +   +      L  L ++ N  
Sbjct: 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 42/212 (19%), Positives = 83/212 (39%), Gaps = 18/212 (8%)

Query: 123 LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN 182
            +         L+  S++    +       +D +  + +  +    ++   Y P +  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLF 74

Query: 183 LSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLF 242
           L+ N     I   + ++ +L  L L  N++  ++   L      L+ L L  N +     
Sbjct: 75  LNGNKLT-DI-KPLANLKNLGWLFLDENKVK-DL-SSLK-DLKKLKSLSLEHNGI--SDI 127

Query: 243 SKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDI 302
           +   +L +L SL+L  N  T      LS  + L+ L + DN +  +I   L  L+ L ++
Sbjct: 128 NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNL 183

Query: 303 MMASNHLQGPIPLEFCQLNYLQILDLSENNIS 334
            ++ NH+     L    L  L +L+L      
Sbjct: 184 YLSKNHISDLRALA--GLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 50/276 (18%), Positives = 93/276 (33%), Gaps = 65/276 (23%)

Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
           F   +  NL +         +  ++NS++ +  +++ +   + + +     N+  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFLNG 77

Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
           N L          L+ L  L LD N    ++  SL +   L+ L +  N +  +I   L 
Sbjct: 78  NKL--TDIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGI-SDING-LV 131

Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKN 354
           +L  L  + + +N +     L   +L  L  L L +N I          S I        
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI----------SDIVP------ 173

Query: 355 MLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC 414
                                             +  LT L+ L L+ N++       L 
Sbjct: 174 ----------------------------------LAGLTKLQNLYLSKNHISDLRA--LA 197

Query: 415 RLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDD 450
            LK L +++L +     +      N  + N   N D
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 40/295 (13%), Positives = 92/295 (31%), Gaps = 59/295 (20%)

Query: 269 LSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDL 328
               +      +   ++   +      L+S+  I+  ++ ++    ++   L  +  L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFL 75

Query: 329 SENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYW 388
           + N ++  +   ++  ++  + L +N +       +  +   + +L L +N  S      
Sbjct: 76  NGNKLT-DIKPLANLKNLGWLFLDENKV---KDLSSLKDLKKLKSLSLEHNGISDING-- 129

Query: 389 IERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSL------ 442
           +  L  L  L L NN +       L RL +L  + L +N I   I      T L      
Sbjct: 130 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLS 186

Query: 443 HNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLS 502
            N+  +  +L                                        L  +  ++L 
Sbjct: 187 KNHISDLRAL--------------------------------------AGLKNLDVLELF 208

Query: 503 CNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGK 557
             +   +     S L     +  +  +L  V P   S+    E  ++ ++     
Sbjct: 209 SQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 44/289 (15%), Positives = 96/289 (33%), Gaps = 57/289 (19%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
                  +L    +T    +     L SI+++  + +  +   S++       +      
Sbjct: 23  FAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSD---SNLKGE 117
            N++         + P                     L N  +L ++   +    +L   
Sbjct: 77  GNKL-------TDIKP---------------------LANLKNLGWLFLDENKVKDLSS- 107

Query: 118 FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
                L++   L +L L +N +S      +     L++LY+  N       L       +
Sbjct: 108 -----LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITVLS---RLTK 157

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
           L  L+L  N    S    +  +  L+ L LS N ++ ++     +   NL+ L L     
Sbjct: 158 LDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS-DLRALAGLK--NLDVLELFSQEC 212

Query: 238 LGQLFSKKNYLRKLVSLH-LDANYFTGEIPKSLSNCSHLEGLYMSDNNL 285
           L +  + ++ L    ++   D +  T   P+ +S+    E   +  +  
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSLVT---PEIISDDGDYEKPNVKWHLP 258

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 35/219 (15%), Positives = 84/219 (38%), Gaps = 27/219 (12%)

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
           +  +  +L   S +  +      L  +  +I  N++++    IQ   L  +  + L+ N 
Sbjct: 24  AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNK 79

Query: 429 IFGQIPGCLDNTSLH--NNGDNDDSLVPAFNHNVRSTY-SAGSSTMEKEESIMFTTKEIS 485
           +   I    +  +L      +N    + +     +    S   + +     +        
Sbjct: 80  L-TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGL-------- 130

Query: 486 FSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVE 545
                  L ++  + L  NK+T +I   +S+LT++  L+L  N ++ ++P   + L +++
Sbjct: 131 -----VHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181

Query: 546 SLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPE 584
           +L +S N+++  +   L  L  L    +       K   
Sbjct: 182 NLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPIN 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 41/191 (21%)

Query: 389 IERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDN 448
            +         L   ++   V      L  +  I  +N++I   + G     ++      
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-KSVQGIQYLPNVT----- 71

Query: 449 DDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG 508
              L    N                         +I        L  +  + L  NK+  
Sbjct: 72  --KLFLNGNKL----------------------TDIKPLAN---LKNLGWLFLDENKVK- 103

Query: 509 EIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNAL 568
           ++   +  L ++++L+L HN ++ +      +L Q+ESL +  N +   I   L  L  L
Sbjct: 104 DLSS-LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKIT-DITV-LSRLTKL 158

Query: 569 AFFSVAHNNLS 579
              S+  N +S
Sbjct: 159 DTLSLEDNQIS 169

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 14/185 (7%)

Query: 127 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 186
            +   L L  N L       + P+  L  L + +        L++    P L  L+LS N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHN 87

Query: 187 DFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---SLLGQLFS 243
               S+P     + +L  LD+S N+LT  +P         L+ L L  N   +L   L +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 244 KKNYLRKLVSLHLDANYFTGEIPKSL-SNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDI 302
                 KL  L L  N  T E+P  L +   +L+ L + +N+LY  IP        L   
Sbjct: 146 P---TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200

Query: 303 MMASN 307
            +  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 10/177 (5%)

Query: 254 LHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPI 313
           LHL  N        +L   + L  L +    L   +    G L  L  + ++ N LQ  +
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHNQLQS-L 92

Query: 314 PLEFCQLNYLQILDLSENNISGSLPSC--SSHSSITQVHLSKNMLYGPLRYGTFFNRSSI 371
           PL    L  L +LD+S N ++ SLP         + +++L  N L   L  G       +
Sbjct: 93  PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKL 150

Query: 372 VTLDLSYNSFSGYIPYWI-ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNN 427
             L L+ N+ +  +P  +   L  L  L+L  N+L   +P        L    L  N
Sbjct: 151 EKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 50/255 (19%), Positives = 93/255 (36%), Gaps = 62/255 (24%)

Query: 323 LQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFS 382
              ++  + N++ +LP        T +HLS+N+LY      T    + +  L+L     +
Sbjct: 12  HLEVNCDKRNLT-ALPP-DLPKDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELT 68

Query: 383 GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSL 442
                    L  L  L L++N L+  +P+    L  L ++D+S N +          TSL
Sbjct: 69  KLQVDG--TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL----------TSL 115

Query: 443 HNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLS 502
                       A                                     L ++  + L 
Sbjct: 116 PLG---------ALRG----------------------------------LGELQELYLK 132

Query: 503 CNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQ 561
            N+L   +PP + +   ++  L+L++NNLT +     + L  +++L +  N+L   IP  
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190

Query: 562 LVELNALAFFSVAHN 576
               + L F  +  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 35/221 (15%), Positives = 67/221 (30%), Gaps = 67/221 (30%)

Query: 363 GTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLI 422
                 +S + ++    + +  +P  +        L L+ N L       L    +L  +
Sbjct: 4   CEVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 423 DLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTK 482
           +L    +                     + +                             
Sbjct: 61  NLDRAEL---------------------TKLQVDGT------------------------ 75

Query: 483 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN 542
                     L  +  +DLS N+L   +P     L  +  L++S N LT +       L 
Sbjct: 76  ----------LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 543 QVESLDISYNNLNGKIPP----QLVELNALAFFSVAHNNLS 579
           +++ L +  N L   +PP       +L  L   S+A+NNL+
Sbjct: 125 ELQELYLKGNELK-TLPPGLLTPTPKLEKL---SLANNNLT 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 45/239 (18%), Positives = 74/239 (30%), Gaps = 69/239 (28%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
               +L L  N L    S + L+  T + +L L   +      L+       L       
Sbjct: 31  KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSH 86

Query: 62  NEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNW 121
           N                QL+S+ L G  +                               
Sbjct: 87  N----------------QLQSLPLLGQTL------------------------------- 99

Query: 122 LLENNTNLNTLVLRNNSLS----GPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
                  L  L +  N L+    G  R   +    L  LY+  N  +  +P  +    P+
Sbjct: 100 -----PALTVLDVSFNRLTSLPLGALRGLGE----LQELYLKGNELK-TLPPGLLTPTPK 149

Query: 178 LVYLNLSRNDFNGSIPSSIGD-MNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN 235
           L  L+L+ N+    +P+ + + + +L+ L L  N L   IP+        L F  L  N
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKG-FFGSHLLPFAFLHGN 205

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 8e-11
 Identities = 32/220 (14%), Positives = 70/220 (31%), Gaps = 56/220 (25%)

Query: 189 NGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYL 248
           + +   +   MNSL  + L++  +T            +L  +                Y 
Sbjct: 33  SSTANITEAQMNSLTYITLANINVT------------DLTGI---------------EYA 65

Query: 249 RKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNH 308
             +  L ++  + T      +S  S+LE L +   ++  +    L  L+SL  + ++ + 
Sbjct: 66  HNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 309 LQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNR 368
               I  +   L  +  +DLS N     +    +   +                      
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELK--------------------- 162

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGE 408
               +L++ ++    Y    IE    L  L   +  + G+
Sbjct: 163 ----SLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 40/185 (21%)

Query: 104 LEYVDFSD---SNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSK 160
           L Y+  ++   ++L G      +E   N+  L + N   +        P   +  L    
Sbjct: 46  LTYITLANINVTDLTG------IEYAHNIKDLTINNIHATN-----YNP---ISGL---- 87

Query: 161 NFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHL 220
                            L  L +   D       ++  + SL  LD+SH+     I   +
Sbjct: 88  ---------------SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 221 AMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYM 280
             +   +  + LS N  +  +   K  L +L SL++  +         + +   L  LY 
Sbjct: 133 N-TLPKVNSIDLSYNGAITDIMPLKT-LPELKSLNIQFDGVHDYRG--IEDFPKLNQLYA 188

Query: 281 SDNNL 285
               +
Sbjct: 189 FSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 25/183 (13%), Positives = 70/183 (38%), Gaps = 12/183 (6%)

Query: 248 LRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASN 307
            +  ++  L  +        + +  + L  + +++ N+  ++   +    ++ D+ + + 
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINV-TDLTG-IEYAHNIKDLTINNI 76

Query: 308 HLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSH-SSITQVHLSKNMLYGPLRYGTFF 366
           H     P+    L+ L+ L +   +++       S  +S+T + +S +            
Sbjct: 77  HATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD-SILTKIN 133

Query: 367 NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSN 426
               + ++DLSYN     I   ++ L  L+ L +  + +     I+     +L  +   +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFS 190

Query: 427 NNI 429
             I
Sbjct: 191 QTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN 552
           L+ +  + +    +T +  P +S LT +  L++SH+     I    + L +V S+D+SYN
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 553 NLNGKIPPQLVELNALAFFSVAHNNLS 579
                I P L  L  L   ++  + + 
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 37/243 (15%), Positives = 75/243 (30%), Gaps = 84/243 (34%)

Query: 314 PLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVT 373
            +   Q+N L  + L+  N++           +T +  + N+                  
Sbjct: 37  NITEAQMNSLTYITLANINVT----------DLTGIEYAHNI----------------KD 70

Query: 374 LDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQI 433
           L ++    + Y P  I  L+ L  L +   ++  +    L  L  L L+D+S++      
Sbjct: 71  LTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH---- 124

Query: 434 PGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPL 493
                          DDS++   N                                   L
Sbjct: 125 ---------------DDSILTKINT----------------------------------L 135

Query: 494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNN 553
            K+  +DLS N    +I P +  L  +++LN+  + +         +  ++  L      
Sbjct: 136 PKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

Query: 554 LNG 556
           + G
Sbjct: 193 IGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 500 DLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIP 559
            ++    T    P IS L+ +  L +   ++T       S L  +  LDIS++  +  I 
Sbjct: 72  TINNIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 560 PQLVELNALAFFSVAHNNLSGKI 582
            ++  L  +    +++N     I
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 19/140 (13%), Positives = 50/140 (35%), Gaps = 10/140 (7%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           M SL  ++L    +T     + + +  +I+ L ++        +  P    S L+     
Sbjct: 43  MNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIM 96

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
             ++  +   + S      L  + +S S    +    +     +  +D S +    + + 
Sbjct: 97  GKDVTSDKIPNLSGLTS--LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

Query: 121 WLLENNTNLNTLVLRNNSLS 140
             L+    L +L ++ + + 
Sbjct: 155 --LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 30/208 (14%), Positives = 66/208 (31%), Gaps = 40/208 (19%)

Query: 11  LNQLTGNISSSPLI--HLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVES 68
           LN L G  S++ +    + S+  + L+         L                       
Sbjct: 26  LNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTGI---EYAH------------- 66

Query: 69  ESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTN 128
                      ++ + ++      T    +    +LE +     ++  + +   L   T+
Sbjct: 67  ----------NIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTS 113

Query: 129 LNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNI-PLEIGVYFPRLVYLNLSRND 187
           L  L + +++        I     ++++ +S N    +I PL+     P L  LN+  + 
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK---TLPELKSLNIQFDG 170

Query: 188 FNGSIPSSIGDMNSLEALDLSHNQLTGE 215
            +      I D   L  L      + G+
Sbjct: 171 VHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 10/187 (5%)

Query: 251 LVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWL-GNLSSLYDIMMASN-H 308
             +L L   +       + SN  ++  +Y+S +     + +    NLS +  I + +  +
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 309 LQGPIPLEFCQLNYLQILDLSENNISGSLPS---CSSHSSITQVHLSKNMLYGPLRYGTF 365
           L    P    +L  L+ L +    +    P      S      + ++ N     +    F
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 366 FN-RSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR--LKQLRLI 422
               +  +TL L  N F+  +  +    T L  + L  N     +             L+
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 423 DLSNNNI 429
           D+S  ++
Sbjct: 211 DVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 41/238 (17%), Positives = 76/238 (31%), Gaps = 43/238 (18%)

Query: 201 SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQL----FSKKNYLRKLVSLHL 256
           S + L L    L   IP H   +  N+  + +S +  L QL    F     L K+  + +
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN---LSKVTHIEI 87

Query: 257 DANYFTGEIPKS-LSNCSHLEGLYMSDNNLYGNIPA--WLGNLSSLYDIMMASNHLQGPI 313
                   I    L     L+ L + +  L    P    + +    + + +  N     I
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 314 PLE-FCQL-NYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSI 371
           P+  F  L N    L L  N  + S+   +                        FN + +
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYA------------------------FNGTKL 181

Query: 372 VTLDLSYNSFSGYIPYWI--ERLTYLRYLILANNNLEGEVPIQLCR-LKQLRLIDLSN 426
             + L+ N +   I         +    L ++  ++   +P +    LK+L   +   
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 8e-10
 Identities = 32/219 (14%), Positives = 74/219 (33%), Gaps = 33/219 (15%)

Query: 127 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 186
            +  TL L    L                  +  + F            P +  + +S +
Sbjct: 31  PSTQTLKLIETHLR----------------TIPSHAFSN---------LPNISRIYVSID 65

Query: 187 DFNGSIPSSI-GDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG-QLFSK 244
                + S    +++ +  +++ + +    I          L+FL +    L      +K
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 245 KNYLRKLVSLHLDANYFTGEIPKSL--SNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDI 302
                    L +  N +   IP +     C+    L + +N    ++  +  N + L  +
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAV 184

Query: 303 MMASN-HLQGPIPLEFCQL-NYLQILDLSENNISGSLPS 339
            +  N +L       F  + +   +LD+S+ +++ +LPS
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 23/117 (19%), Positives = 56/117 (47%), Gaps = 7/117 (5%)

Query: 323 LQILDLSENNISGSLPSCSSH--SSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNS 380
            Q L L E ++  ++PS +     +I+++++S ++    L   +F+N S +  +++    
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 381 FSGYIPY-WIERLTYLRYLILANNNLEGEVP--IQLCRLKQLRLIDLSNNNIFGQIP 434
              YI    ++ L  L++L + N  L+   P   ++       ++++++N     IP
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 38/280 (13%), Positives = 79/280 (28%), Gaps = 67/280 (23%)

Query: 272 CSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSEN 331
           C   E   ++  ++   IP+   +  +L    +   HL+      F  L  +  + +S +
Sbjct: 10  CHQEEDFRVTCKDI-QRIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 332 NISGSLPSC--SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIP--Y 387
                L S    + S +T + +        +          +  L +         P   
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLT 124

Query: 388 WIERLTYLRYLILANNNLEGEVPIQLCR--LKQLRLIDLSNNNIFGQIPGCLDNTSLHNN 445
            +        L + +N     +P+   +    +   + L NN            TS+   
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF----------TSVQGY 174

Query: 446 GDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK 505
                    AFN                                G  L+ +Y   L+ NK
Sbjct: 175 ---------AFN--------------------------------GTKLDAVY---LNKNK 190

Query: 506 LTGEIPPQI-SKL-TRIRALNLSHNNLTGVIPVTFSNLNQ 543
               I       + +    L++S  ++T +      +L +
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKE 230

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
             ++C  +   IP   S     + L L   +L  +    FSNL  +  + +S +    ++
Sbjct: 16  FRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 559 PPQL-VELNALAFFSVAHNNLSGKIP 583
                  L+ +    + +      I 
Sbjct: 72  ESHSFYNLSKVTHIEIRNTRNLTYID 97

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 43/228 (18%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP--FFNNSKLKVFS- 58
            S + L L    L   I S    +L +I R+++S +   +   LE   F+N SK+     
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV-TLQ-QLESHSFYNLSKVTHIEI 87

Query: 59  GECNEI-FVESESSHSMTPKFQLESVALSGSGIHATFP--KFLYNQHDLEYVDFSDSNLK 115
                + +++ ++   +     L+ + +  +G+   FP    +Y+      ++ +D+   
Sbjct: 88  RNTRNLTYIDPDALKELP---LLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYM 143

Query: 116 GEFLNWLLENNTN-LNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVY 174
                   +   N   TL L NN  +                 V    F G         
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFT----------------SVQGYAFNG--------- 178

Query: 175 FPRLVYLNLSRNDFNGSIPSSI--GDMNSLEALDLSHNQLTGEIPEHL 220
             +L  + L++N +   I      G  +    LD+S   +T  +P   
Sbjct: 179 -TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 31/268 (11%), Positives = 77/268 (28%), Gaps = 63/268 (23%)

Query: 318 CQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLS 377
           C+ +  +   ++  +I   +PS     S   + L +  L   +    F N  +I  + +S
Sbjct: 8   CECHQEEDFRVTCKDIQ-RIPSLPP--STQTLKLIETHLRT-IPSHAFSNLPNISRIYVS 63

Query: 378 YNSFSGYIPYWI-ERLTYLRYLILANNNLEGEVPIQLCR-LKQLRLIDLSNNNIFGQIPG 435
            +     +       L+ + ++ + N      +     + L  L+ + + N  +      
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL------ 117

Query: 436 CLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNK 495
                                                         K      K    + 
Sbjct: 118 ----------------------------------------------KMFPDLTKVYSTDI 131

Query: 496 MYGVDLSCNKLTGEIPPQI-SKLTR-IRALNLSHNNLTGVIPVTFSNLNQVESLDISYNN 553
            + ++++ N     IP      L      L L +N  T V    F+    ++++ ++ N 
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNK 190

Query: 554 LNGKIPPQLVE--LNALAFFSVAHNNLS 579
               I         +  +   V+  +++
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 56/340 (16%), Positives = 112/340 (32%), Gaps = 92/340 (27%)

Query: 122 LLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL 181
                  + +L L  N+L             + T+ + + F      +           L
Sbjct: 17  FTSIPHGVTSLDLSLNNLY-----------SISTVELIQAFANTPASVT---------SL 56

Query: 182 NLSRNDFNGSIPSSIGDM-----NSLEALDLSHNQLTGE----IPEHLAMSCFNLEFLVL 232
           NLS N         +  +      ++ +L+LS N L+ +    + + LA   F +  L L
Sbjct: 57  NLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 233 SENSL-------LGQLFSKKNYLRKLVSLHLDANYFTGE----IPKSLSNC-SHLEGLYM 280
             N           Q FS       + SL+L  N    +    + + L+   +++  L +
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLP--ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174

Query: 281 SDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC 340
             NNL  +       L+      +AS                +  LDLS N +       
Sbjct: 175 RGNNL-ASKNCAE--LAK----FLASIPAS------------VTSLDLSANLLGL----- 210

Query: 341 SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSG----YIPYWIERLTYLR 396
            S++ +  +  S                + +V+L+L  N   G     +    + L +L+
Sbjct: 211 KSYAELAYIFSSIP--------------NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 397 YLILANNNLEGEVPIQ-------LCRLKQLRLIDLSNNNI 429
            + L  + ++     Q          ++++ L+D +   I
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 37/316 (11%), Positives = 90/316 (28%), Gaps = 73/316 (23%)

Query: 2   TSLRVLSLDLNQLTGN----ISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVF 57
            ++  L+L  N L+      +  +      +I  L L +N F                  
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS----------------- 122

Query: 58  SGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFL-----YNQHDLEYVDFSDS 112
           S   +E      +  +      + S+ L G+ +       L         ++  ++   +
Sbjct: 123 SKSSSEFKQAFSNLPA-----SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177

Query: 113 NLKGEFLNWLLE----NNTNLNTLVLRNNSLSGPFRMPI-----QPHWHLDTLYVSKNFF 163
           NL  +    L +       ++ +L L  N L       +         H+ +L +  N  
Sbjct: 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237

Query: 164 QGNIPLEIGVYF---PRLVYLNLSRNDFNG-------SIPSSIGDMNSLEALDLSHNQLT 213
            G     + +       L  + L  +           ++ ++  ++  +  +D +  ++ 
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

Query: 214 GE----IPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSL 269
                 I   +       +   L    L   +F++K+                    + L
Sbjct: 298 PSHSIPISNLIRELSGKADVPSLLNQCL---IFAQKH----------------QTNIEDL 338

Query: 270 SNCSHLEGLYMSDNNL 285
           +    L     +   L
Sbjct: 339 NIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 50/333 (15%), Positives = 98/333 (29%), Gaps = 101/333 (30%)

Query: 269 LSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDL 328
            S    +  L +S NNLY      L           A+                +  L+L
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQ-------AFANTPAS------------VTSLNL 58

Query: 329 SENNISGS--------LPSCSSHSSITQVHLSKNMLYGP----LRYGTFFNRSSIVTLDL 376
           S N++           L +    +++T ++LS N L       L         +I  LDL
Sbjct: 59  SGNSLGFKNSDELVQILAAI--PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 377 SYNSFSGY-IPYWIERL----TYLRYLILANNNLEGEVPIQLCRL-----KQLRLIDLSN 426
            +N FS      + +        +  L L  N+L  +   +L ++       +  ++L  
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 427 NNI-----------FGQIPGCLDNTSLHNNGDNDD---SLVPAFNHNVRSTYSAGSSTME 472
           NN+              IP  + +  L  N         L   F+           + + 
Sbjct: 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI--------PNHVV 228

Query: 473 KEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKL----TRIRALNLSHN 528
                                     ++L  N L G     +  L      ++ + L ++
Sbjct: 229 S-------------------------LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263

Query: 529 NLTGVIPV-------TFSNLNQVESLDISYNNL 554
            +  +           F N+ ++  +D +   +
Sbjct: 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.6 bits (147), Expect = 6e-10
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 16/174 (9%)

Query: 264 EIPKSLSNCSHLEGLYMSDNNLYGNIPAW-LGNLSSLYDIMMASNHLQGPIPLE-FCQLN 321
            +P+SL   S+   L +S NNL      W    L++L+ ++++ NHL   I  E F  + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 322 YLQILDLSENNISGSLPSCSSH--SSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYN 379
            L+ LDLS N++  +L         ++  + L  N +   +    F + + +  L LS N
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQN 146

Query: 380 SFSGYIP----YWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRL--IDLSNN 427
             S   P        +L  L  L L++N L+      L +L       + L NN
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 42/181 (23%), Positives = 59/181 (32%), Gaps = 38/181 (20%)

Query: 127 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 186
           +    L L +N+LS      ++  W                          L  L LS N
Sbjct: 39  SYTALLDLSHNNLSR-----LRAEW----------TPTR---------LTNLHSLLLSHN 74

Query: 187 DFNGSIPSSI-GDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---SLLGQLF 242
             N  I S     + +L  LDLS N L   + E L      LE L+L  N    +    F
Sbjct: 75  HLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132

Query: 243 SKKNYLRKLVSLHLDANYFTGEIP----KSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS 298
                + +L  L+L  N  +   P    K  +    L  L +S N L       L  L +
Sbjct: 133 ED---MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188

Query: 299 L 299
            
Sbjct: 189 W 189

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 9e-09
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 16/121 (13%)

Query: 500 DLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
           DLS N L   +   + S L  +  L L +N++  V    F ++ Q++ L +S N ++ + 
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 559 PPQ----LVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSY---EGNPLLCGKPLPDC 611
           P +      +L  L    ++ N L  K+P    Q       +      NPL C     DC
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLEC-----DC 205

Query: 612 D 612
            
Sbjct: 206 K 206

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 500 DLSCNKLTGEIPPQI--SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGK 557
           DLS N L+  +  +   ++LT + +L LSHN+L  +    F  +  +  LD+S N+L+  
Sbjct: 45  DLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-T 102

Query: 558 IPPQ-LVELNALAFFSVAHNNLS 579
           +      +L AL    + +N++ 
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP-VTFSNLNQVESLDISYNNLNGK 557
           +  S  +L   +P  +   T +  L+LSHNNL+ +    T + L  + SL +S+N+LN  
Sbjct: 23  LSCSKQQLP-NVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-F 78

Query: 558 IPPQ-LVELNALAFFSVAHNNLS 579
           I  +  V +  L +  ++ N+L 
Sbjct: 79  ISSEAFVPVPNLRYLDLSSNHLH 101

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 58.8 bits (141), Expect = 2e-09
 Identities = 30/186 (16%), Positives = 67/186 (36%), Gaps = 19/186 (10%)

Query: 102 HDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKN 161
            D+++ +   S ++   L+ +L+    LN L ++  +      +  +P  +L +L +   
Sbjct: 147 GDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISG 203

Query: 162 FFQGNIPLEIGV-YFPRLVYLNLSRNDFNGSIPSSIGDMN---------SLEALDLSHNQ 211
               ++  +I     P L  L L     +      +             +L+ L +   +
Sbjct: 204 GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263

Query: 212 LTGEIPEHLAMSCF--NLEFLVLSENSL----LGQLFSKKNYLRKLVSLHLDANYFTGEI 265
               + E    S     LE + +S   L       L    + ++ L  +++  NY + E+
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323

Query: 266 PKSLSN 271
            K L  
Sbjct: 324 KKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 5e-04
 Identities = 21/153 (13%), Positives = 50/153 (32%), Gaps = 22/153 (14%)

Query: 223 SCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSL--SNCSHLEGL-- 278
           +   L  L +   + L      +  L+   SL + +      + + +  S+  +LE L  
Sbjct: 170 AMPLLNNLKIKGTNNLSIGKKPRPNLK---SLEIISGGLPDSVVEDILGSDLPNLEKLVL 226

Query: 279 YMSDNNLYGNIPA-------WLGNLSSLYDIMMASNHLQGPIPLEFCQ---LNYLQILDL 328
           Y+   +   +                +L  + +     Q  +   F +   L  L+ +D+
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286

Query: 329 SENNISGS-----LPSCSSHSSITQVHLSKNML 356
           S   ++       L        +  +++  N L
Sbjct: 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 35/231 (15%), Positives = 73/231 (31%), Gaps = 40/231 (17%)

Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
               V  NL +     +   S  +++ ++  +  ++ +             +L  +    
Sbjct: 18  LANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ------------SLAGM---- 59

Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
                       +   L  LHL  N  + ++   L + + LE L ++ N L         
Sbjct: 60  -----------QFFTNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLKNLNGIPSA 106

Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKN 354
            LS L+   + +N L+    L    L  L+IL +  N +  S+      S +  + L  N
Sbjct: 107 CLSRLF---LDNNELRDTDSLI--HLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGN 160

Query: 355 MLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405
            +      G       +  +DL+          +   L     +   +   
Sbjct: 161 EIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 13/161 (8%)

Query: 269 LSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDL 328
               ++     +   ++   +      LS + +    ++++Q    ++      L+ L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQ--FFTNLKELHL 70

Query: 329 SENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYW 388
           S N IS  L      + + ++ +++N     L+       + +  L L  N         
Sbjct: 71  SHNQIS-DLSPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDTDS-- 123

Query: 389 IERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
           +  L  L  L + NN L+  V +    L +L ++DL  N I
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 34/217 (15%), Positives = 75/217 (34%), Gaps = 29/217 (13%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           ++ ++  + D + +    S + +   T+++ L LS+NQ      L P  + +KL+  S  
Sbjct: 40  LSGVQNFNGDNSNIQ---SLAGMQFFTNLKELHLSHNQIS---DLSPLKDLTKLEELSVN 93

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSD---SNLKGE 117
            N +      + +  P   L  + L  + +       L +  +LE +   +    ++   
Sbjct: 94  RNRL-----KNLNGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKSIVM- 145

Query: 118 FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR 177
                L   + L  L L  N ++      +     ++ + ++          E   Y P 
Sbjct: 146 -----LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ----KCVNEPVKYQPE 194

Query: 178 LVYLNLSRNDFNGSI-PSSIGDMNSLEALDLSHNQLT 213
           L   N  ++     I P  I +  S     +      
Sbjct: 195 LYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 42/269 (15%), Positives = 80/269 (29%), Gaps = 55/269 (20%)

Query: 21  SPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQL 80
            P   L +  +  L          L      S ++ F+G+ + I        S+      
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNI-------QSLAG---- 58

Query: 81  ESVALSGSGIHATFPKFLYNQHDLEYVDFSD---SNLKGEFLNWLLENNTNLNTLVLRNN 137
                            +    +L+ +  S    S+L        L++ T L  L +  N
Sbjct: 59  -----------------MQFFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRN 95

Query: 138 SLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG 197
            L     +   P   L  L++  N  +    L    +   L  L++  N         +G
Sbjct: 96  RLK---NLNGIPSACLSRLFLDNNELRDTDSLI---HLKNLEILSIRNN--KLKSIVMLG 147

Query: 198 DMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLD 257
            ++ LE LDL  N++T             + ++ L+       +     Y  +L   +  
Sbjct: 148 FLSKLEVLDLHGNEITNTGGLT---RLKKVNWIDLTGQKC---VNEPVKYQPELYITNTV 201

Query: 258 ANYFTGEI-PKSLSNCSHLEGLYMSDNNL 285
            +     I P  +SN        +     
Sbjct: 202 KDPDGRWISPYYISNGGSYVDGCVLWELP 230

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 33/202 (16%), Positives = 72/202 (35%), Gaps = 24/202 (11%)

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
           ++ V  +L   S +  +    + L+ ++     N+N++    +Q      L+ + LS+N 
Sbjct: 19  ANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQ--FFTNLKELHLSHNQ 74

Query: 429 IFGQIPGCLDNTSLH--NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISF 486
           I   +    D T L   +   N    +        S     ++ +   +S+         
Sbjct: 75  I-SDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSL--------- 124

Query: 487 SYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVES 546
                 L  +  + +  NKL   I   +  L+++  L+L  N +T       + L +V  
Sbjct: 125 ----IHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNW 176

Query: 547 LDISYNNLNGKIPPQLVELNAL 568
           +D++      +      EL   
Sbjct: 177 IDLTGQKCVNEPVKYQPELYIT 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 51/202 (25%), Positives = 80/202 (39%), Gaps = 36/202 (17%)

Query: 253 SLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWL-GNLSSLYDIMMASNHLQG 311
            L L +N  +    K+    + L  LY++DN L   +PA +   L +L  + +  N LQ 
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQA 99

Query: 312 PIPLE-FCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSS 370
            +P+  F QL  L  L L  N +  SLP                          F + + 
Sbjct: 100 -LPIGVFDQLVNLAELRLDRNQLK-SLPP-----------------------RVFDSLTK 134

Query: 371 IVTLDLSYNSFSGYIPYWI-ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
           +  L L YN     +P  + ++LT L+ L L NN L+        +L +L+ + L NN +
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

Query: 430 FGQIPGCLDNTS------LHNN 445
                G  D+        L  N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 52/224 (23%), Positives = 81/224 (36%), Gaps = 49/224 (21%)

Query: 191 SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN---SLLGQLFSKKNY 247
           +IPS+I      + LDL  N+L+  +P         L  L L++N   +L   +F +   
Sbjct: 30  AIPSNIPA--DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE--- 83

Query: 248 LRKLVSLHLDANYFT---GEIPKSLSNCSHLEGLYMSDNNLYGNIPAW----LGNLSSLY 300
           L+ L +L +  N        +   L N   L  L +  N L  ++P      L  L+ L 
Sbjct: 84  LKNLETLWVTDNKLQALPIGVFDQLVN---LAELRLDRNQL-KSLPPRVFDSLTKLTYLS 139

Query: 301 DIMMASNHLQGPIPLE-FCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGP 359
              +  N LQ  +P   F +L  L+ L L  N +   +P                     
Sbjct: 140 ---LGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPE-------------------- 174

Query: 360 LRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANN 403
              G F   + + TL L  N          + L  L+ L L  N
Sbjct: 175 ---GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 26/169 (15%)

Query: 127 TNLNTLVLRNNSLS----GPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN 182
           T L  L L +N L     G F+        L+TL+V+ N  Q  +P+ +      L  L 
Sbjct: 61  TKLRLLYLNDNKLQTLPAGIFKELKN----LETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115

Query: 183 LSRNDFNGSIPSSIGD-MNSLEALDLSHNQLTGEIPE----HLAMSCFNLEFLVLSEN-- 235
           L RN    S+P  + D +  L  L L +N+L   +P+     L     +L+ L L  N  
Sbjct: 116 LDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT----SLKELRLYNNQL 169

Query: 236 -SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDN 283
             +    F K   L +L +L LD N        +  +   L+ L + +N
Sbjct: 170 KRVPEGAFDK---LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 14/146 (9%)

Query: 288 NIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPS--CSSHSS 345
           NIPA   +   L    + SN L       F +L  L++L L++N +  +LP+       +
Sbjct: 34  NIPA---DTKKLD---LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWI-ERLTYLRYLILANNN 404
           +  + ++ N L   L  G F    ++  L L  N     +P  + + LT L YL L  N 
Sbjct: 87  LETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE 144

Query: 405 LEGEVPIQLC-RLKQLRLIDLSNNNI 429
           L+  +P  +  +L  L+ + L NN +
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQL 169

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 47/191 (24%), Positives = 70/191 (36%), Gaps = 49/191 (25%)

Query: 374 LDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC-RLKQLRLIDLSNN----- 427
           LDL  N  S        RLT LR L L +N L+  +P  +   LK L  + +++N     
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 428 --NIFGQIPGCLDNTSLHNNGDNDDSLVP-AFNHNVRSTYSAGSSTMEKEESIMFTTKEI 484
              +F Q    L    L  N     SL P  F+                           
Sbjct: 101 PIGVFDQ-LVNLAELRLDRNQLK--SLPPRVFDS-------------------------- 131

Query: 485 SFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQ 543
                   L K+  + L  N+L   +P  +  KLT ++ L L +N L  V    F  L +
Sbjct: 132 --------LTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182

Query: 544 VESLDISYNNL 554
           +++L +  N L
Sbjct: 183 LKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 48/218 (22%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
              + L L  N+L+ ++ S     LT +  L+L+ N+ Q   +L          +F    
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---TLPA-------GIF---- 81

Query: 62  NEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLK----GE 117
                       +     LE++ ++ + + A          +L  +    + LK      
Sbjct: 82  ----------KELK---NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV 128

Query: 118 FLNWLLENNTNLNTLVLRNNSL----SGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGV 173
           F     ++ T L  L L  N L     G F         L  L +  N  +  +P     
Sbjct: 129 F-----DSLTKLTYLSLGYNELQSLPKGVFDKLTS----LKELRLYNNQLK-RVPEGAFD 178

Query: 174 YFPRLVYLNLSRNDFNGSIPSSIGD-MNSLEALDLSHN 210
               L  L L  N     +P    D +  L+ L L  N
Sbjct: 179 KLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 41/268 (15%), Positives = 75/268 (27%), Gaps = 49/268 (18%)

Query: 100 NQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPI-----QPHWHLD 154
            +H L+ V+ +   L    L  LL        L L+ NSL       +          + 
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158

Query: 155 TLYVSKNFFQGNIPLEIGVYF--------PRLVYLNLSRNDFNGSIPSSIGDM----NSL 202
           TL +S N          GV            + +L+L            +         L
Sbjct: 159 TLRLSNNPLT-----AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213

Query: 203 EALDLSHNQLTGEIPEHLA---MSCFNLEFLVLSENSL-------LGQLFSKKNYLRKLV 252
           + L++++N         LA       +LE L L  N L       L  L        ++V
Sbjct: 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVV 273

Query: 253 SLHLDANYFTGEIPKSLS----NCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNH 308
               +    +      LS    N +  +   +  +            L    D+  +   
Sbjct: 274 VSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRH----------LELLLR-DLEDSRGA 322

Query: 309 LQGPIPL-EFCQLN-YLQILDLSENNIS 334
              P    +  ++   ++ L     +  
Sbjct: 323 TLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 10/118 (8%)

Query: 499 VDLSC-NKLTGEIPPQISKLTRIRALNLSHNNLTGVIP-VTFSNLNQVESLDISYNNLNG 556
             L C      +    +     +  L + +      +       L ++ +L I  + L  
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR- 69

Query: 557 KIPPQ-LVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDV 613
            + P        L+  +++ N L   +   T Q  + +E    GNPL C      C +
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC-----SCAL 121

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 8e-07
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 264 EIPKSLSNCSHLEGLYMSDNNLYGNIPAW-LGNLSSLYDIMMASNHLQGPIPLEFCQLNY 322
           +    L    +L  LY+ +     ++    L  L  L ++ +  + L+   P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 323 LQILDLSENNISGSLPSCSSHSSITQVHLSKNML 356
           L  L+LS N +           S+ ++ LS N L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 338 PSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIP-YWIERLTYLR 396
            +C  H S + +  +++     L         ++  L +       ++    +  L  LR
Sbjct: 3   DACCPHGS-SGLRCTRDGALDSLH--HLPGAENLTELYIENQQHLQHLELRDLRGLGELR 59

Query: 397 YLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHN 444
            L +  + L    P       +L  ++LS N +       +   SL  
Sbjct: 60  NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE 107

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 19/206 (9%)

Query: 389 IERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDN-------TS 441
                 L    L+       +  +L   K+L+ ++  N      I   +           
Sbjct: 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 403

Query: 442 LHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKG-------KPLN 494
                    ++ P     +    S         +      + +  ++K        + L 
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLL 463

Query: 495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554
            +  +DLS N+L   +PP ++ L  +  L  S N L  V     +NL +++ L +  N L
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRL 520

Query: 555 NG-KIPPQLVELNALAFFSVAHNNLS 579
                   LV    L   ++  N+L 
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 41/180 (22%)

Query: 117 EFLNWLLENNTNLNTLVLRNNSLSGPFRMP-----------IQPHWHLDTLYVSKNFFQG 165
           + L +  E     +TL   +   +                    +  +  L+++      
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV 455

Query: 166 NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCF 225
              LE       + +L+LS N    ++P ++  +  LE L  S N L   +   +A +  
Sbjct: 456 LCHLE---QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VA-NLP 508

Query: 226 NLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL 285
            L+ L+L  N              +L               + L +C  L  L +  N+L
Sbjct: 509 RLQELLLCNN--------------RLQQS---------AAIQPLVSCPRLVLLNLQGNSL 545

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 5/157 (3%)

Query: 250 KLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHL 309
           + V LH        ++  +LS     + L +S NN+   I + L  + +L  + +  N +
Sbjct: 26  EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNI-EKISS-LSGMENLRILSLGRNLI 82

Query: 310 QGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRS 369
           +    L+    + L+ L +S N I+ SL       ++  +++S N +             
Sbjct: 83  KKIENLDAV-ADTLEELWISYNQIA-SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALD 140

Query: 370 SIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLE 406
            +  L L+ N              Y   ++    NL+
Sbjct: 141 KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 14/155 (9%)

Query: 176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN 235
              V L+         + +++  + + + L LS N +  +I   L+    NL  L L  N
Sbjct: 25  AEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRN 80

Query: 236 SL--LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL--YGNIPA 291
            +  +  L +  + L +   L +  N     +   +    +L  LYMS+N +  +G I  
Sbjct: 81  LIKKIENLDAVADTLEE---LWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEI-D 134

Query: 292 WLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQIL 326
            L  L  L D+++A N L            Y   +
Sbjct: 135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 194 SSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL--LGQLFSKKNYLRKL 251
           +   +      LDL   ++   I E+L  +    + +  S+N +  L         LR+L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRKLDGF----PLLRRL 66

Query: 252 VSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL 285
            +L ++ N               L  L +++N+L
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 12/117 (10%)

Query: 123 LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQ--GNIPLEIGVYFPRLVY 180
             N      L LR   +     +        D +  S N  +     P        RL  
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLD-QFDAIDFSDNEIRKLDGFP-----LLRRLKT 68

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLT--GEIPEHLAMSCFNLEFLVLSEN 235
           L ++ N            +  L  L L++N L   G++ + LA S  +L +L +  N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%)

Query: 325 ILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGY 384
           ++ L+   I       ++     ++ L    +  P+             +D S N     
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 385 IPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
           +  +   L  L+ L++ NN +          L  L  + L+NN++
Sbjct: 57  LDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 58/424 (13%), Positives = 128/424 (30%), Gaps = 67/424 (15%)

Query: 174 YFPRLVYLNLSRNDFNGSIPSSIGDM----NSLEALDLSHNQLTGEIPEHLAMS-CFNLE 228
             PR    NL   ++ G +   + ++      L+++      ++    + LA +   +LE
Sbjct: 82  GKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLE 141

Query: 229 FLVLSENSLLGQ--LFSKKNYLRKLVSLHLDANYFTGEIPKSLS----NCSHLEGLYMSD 282
            L L + S      L S   + RK+ +L ++ + F+ +  K L     + + LE L    
Sbjct: 142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYM 201

Query: 283 NNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSS 342
                 I     +   L  I      L             +++ D     + G   + ++
Sbjct: 202 TEF-AKI-----SPKDLETIARNCRSLV-----------SVKVGDFEILELVGFFKAAAN 244

Query: 343 HSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILAN 402
                   L++++   P +Y        +  L LSY   +  +P        +R L L  
Sbjct: 245 LEEFCGGSLNEDIG-MPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLY 302

Query: 403 NNLEGEVPIQL-CRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVR 461
             LE E    L  +   L +++  N          + +  L                 ++
Sbjct: 303 ALLETEDHCTLIQKCPNLEVLETRN---------VIGDRGLEVLAQY--------CKQLK 345

Query: 462 STYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE----IPPQISKL 517
                  +  +  E       +       +   ++  + +  + +T E    I   +  L
Sbjct: 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL 405

Query: 518 TRIRALNLSH-NNLTGV-----IPVTFSNLNQVESLDISYNNLN---------GKIPPQL 562
              R + L     +T +     +        ++                    G+  P +
Sbjct: 406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465

Query: 563 VELN 566
             + 
Sbjct: 466 RWML 469

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 51/387 (13%), Positives = 119/387 (30%), Gaps = 62/387 (16%)

Query: 79  QLESVALSGSGIHATFPKFLY----NQHDLEYVDFSDSNLKG---EFLNWLLENNTNLNT 131
           +++++ +  S       K+L+    +   LE ++F  +       + L  +  N  +L +
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224

Query: 132 LVLRNNSLSGPFR-MPIQPHW-HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFN 189
           + + +  +           +        ++++       + + V+  +L  L LS    N
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL-VFPRKLCRLGLSYMGPN 283

Query: 190 GSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLS---ENSLLGQLFSKKN 246
             +P        +  LDL +  L  E    L   C NLE L       +  L  L     
Sbjct: 284 E-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ--- 339

Query: 247 YLRKLVSLHLDANYFTGEIPKSLS------------NCSHLEGLYMSDNNL----YGNIP 290
           Y ++L  L ++       +                  C  LE + +  +++      +I 
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 291 AWLGNLSSLYDIMMASNHLQGPIPLE------FCQLNYLQILDLSENNISGSLPSCSSHS 344
            +L NL     +++        +PL+            L+                   +
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR--------QGGLT 451

Query: 345 SITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGY-IPYWIERLTYLRYLILANN 403
            +   ++ +                ++  + L Y   S   +  +      L+ L +   
Sbjct: 452 DLGLSYIGQYS-------------PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498

Query: 404 NL-EGEVPIQLCRLKQLRLIDLSNNNI 429
              E  +   + +L  LR + +     
Sbjct: 499 CFSERAIAAAVTKLPSLRYLWVQGYRA 525

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 43/180 (23%), Positives = 62/180 (34%), Gaps = 34/180 (18%)

Query: 253 SLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA----WLGNLSSLYDIMMASNH 308
            L L +         +    + L  L +  N L   + A     L  L +L    +A+N 
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLG---LANNQ 94

Query: 309 LQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNR 368
           L       F  L  L  L L  N +  SLPS                       G F   
Sbjct: 95  LASLPLGVFDHLTQLDKLYLGGNQLK-SLPS-----------------------GVFDRL 130

Query: 369 SSIVTLDLSYNSFSGYIPYWI-ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNN 427
           + +  L L+ N     IP    ++LT L+ L L+ N L+        RL +L+ I L  N
Sbjct: 131 TKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 83/588 (14%), Positives = 182/588 (30%), Gaps = 161/588 (27%)

Query: 25  HL-TSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESV 83
           H+          Y    +    + F     +  F  +C ++    +   S+  K +++ +
Sbjct: 6   HMDFETGEHQYQYKDI-LSVFEDAF-----VDNF--DCKDV---QDMPKSILSKEEIDHI 54

Query: 84  ALSGSGIHATFPKF--LYNQHDLEYVDFSDSNLKGEFLNWLLE------NNTNLNTLVL- 134
            +S   +  T   F  L ++ +     F +  L+  +  +L+          ++ T +  
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYI 113

Query: 135 --RNNSLSGPFRMP------IQPHW----HLDTLYVSKN-FFQG---------------N 166
             R+   +            +QP+      L  L  +KN    G               +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 167 IPLEIGVYFPRLVY-LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCF 225
             ++        ++ LNL   +     P ++  +  L+ L    +       +H +    
Sbjct: 174 YKVQCK--MDFKIFWLNLKNCN----SPETV--LEMLQKLLYQIDPNWTSRSDHSS---- 221

Query: 226 NLEFLVLSENSLLGQLFSKKNYLRKLVSL-------HLDA-----------------NYF 261
           N++  + S  + L +L   K Y   L+ L         +A                 ++ 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 262 TGEIPKSLSNCSHLEGLYMSDN-NLYGNIPAWLG-NLSSLYDIMMASNHLQGPIPLEFCQ 319
           +      +S   H   L   +  +L      +L      L              P E   
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLK---YLDCRPQDL--------------PREVLT 324

Query: 320 LNYLQILDLSENNISGSL-------PSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIV 372
            N  ++  ++E+   G          +C   ++I +   S N+L  P  Y   F+R S+ 
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLE-PAEYRKMFDRLSVF 381

Query: 373 TLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQ 432
                      +IP     L+     ++  + ++ +V + + +L +  L++         
Sbjct: 382 PPSA-------HIP--TILLS-----LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 433 IPG--------CLDNTSLHN----------NGDNDDSLVPA-----FNHNVRSTYSAGSS 469
           IP           +  +LH             D+DD + P      ++H      +    
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 470 TMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKL 517
               E   +F    + F +      K+     + N  +G I   + +L
Sbjct: 488 ----ERMTLFRMVFLDFRFLE---QKIRHDSTAWNA-SGSILNTLQQL 527

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 12/131 (9%)

Query: 324 QILDLSENNISGSLPSC--SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSF 381
             + L +N I   +P    S +  + ++ LS N +   L    F    S+ +L L  N  
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKI 92

Query: 382 SGYIPYWIERLTYLRYLILANNNLEGEVPIQL-CRLKQLRLIDLSNNNIFGQIPGCLDNT 440
           +       E L  L+ L+L  N +   + +     L  L L+ L +N +     G     
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 441 S------LHNN 445
                  L  N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 500 DLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554
            L  NK+T E+P  +   L  ++ L L+ N +  +    F +L+ +  L +  N L
Sbjct: 86  VLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 176 PRLVYLNLSRNDFNGSIPSSIGD-MNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
            +L  ++LS N  +  +       + SL +L L  N++T E+P+ L    F+L+ L+L+ 
Sbjct: 56  KKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNA 113

Query: 235 N---SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDN 283
           N    L    F     L  L  L L  N        + S    ++ ++++ N
Sbjct: 114 NKINCLRVDAFQD---LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 32/154 (20%)

Query: 254 LHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAW----LGNLSSLYDIMMASNHL 309
           + L+ N      P + S    L  + +S+N +   +       L +L+SL    +  N +
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLV---LYGNKI 92

Query: 310 QGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRS 369
                  F  L  LQ+L L+ N I+  L                           F +  
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKIN-CLRV-----------------------DAFQDLH 128

Query: 370 SIVTLDLSYNSFSGYIPYWIERLTYLRYLILANN 403
           ++  L L  N            L  ++ + LA N
Sbjct: 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 306 SNHLQGPIPLEFCQLNYLQILDLSENNISGSLPS--CSSHSSITQVHLSKNMLYGPLRYG 363
            N ++   P  F     L+ +DLS N IS  L         S+  + L  N +   L   
Sbjct: 41  QNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE-LPKS 98

Query: 364 TFFNRSSIVTLDLSYNSFSGYIPYWI-ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLI 422
            F    S+  L L+ N  +  +     + L  L  L L +N L+         L+ ++ +
Sbjct: 99  LFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157

Query: 423 DLSNN 427
            L+ N
Sbjct: 158 HLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
           VD     LT EIP  + +      + L  N +  + P  FS   ++  +D+S N ++ ++
Sbjct: 16  VDCRGKGLT-EIPTNLPETITE--IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-EL 71

Query: 559 PP----QLVELNALAFFSVAHNNLS 579
            P     L  LN+L    +  N ++
Sbjct: 72  APDAFQGLRSLNSL---VLYGNKIT 93

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 500 DLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
            L  N +   IPP   S   ++R ++LS+N ++ + P  F  L  + SL +  N +  ++
Sbjct: 38  RLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95

Query: 559 PPQLVE-LNALAFFSVAHNNLSGKIPE 584
           P  L E L +L    +  N ++  +  
Sbjct: 96  PKSLFEGLFSLQLLLLNANKIN-CLRV 121

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 31/161 (19%), Positives = 56/161 (34%), Gaps = 33/161 (20%)

Query: 244 KKNYLRKLVSLHLDANYFT-GEIPKSLSNCSHLEGLYMSDNNLY--GNIPAWLGNLSSLY 300
           +      +  L LD      G+I    +   +LE L + +  L    N+P     L  L 
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLK 74

Query: 301 DIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPL 360
            + ++ N + G + +   +L  L  L+LS N +            I+ +   K +     
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL----------KDISTLEPLKKL----- 119

Query: 361 RYGTFFNRSSIVTLDLSYN---SFSGYIPYWIERLTYLRYL 398
                     + +LDL      + + Y     + L  L YL
Sbjct: 120 --------ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 315 LEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTL 374
                +  L +LD  ++N        +   ++  + L    L   +          +  L
Sbjct: 21  RTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL---ISVSNLPKLPKLKKL 76

Query: 375 DLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQ-LCRLKQLRLIDLSNN 427
           +LS N   G +    E+L  L +L L+ N L+    ++ L +L+ L+ +DL N 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 12/116 (10%)

Query: 125 NNTNLNTLVLRNNSLSGPFRMPIQPH-WHLDTLYVSKNFFQ--GNIPLEIGVYFPRLVYL 181
               +  LVL N   +      +     +L+ L +         N+P       P+L  L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP-----KLPKLKKL 76

Query: 182 NLSRNDFNGSIPSSIGDMNSLEALDLSHNQLT--GEIPEHLAMSCFNLEFLVLSEN 235
            LS N   G +      + +L  L+LS N+L     + E L      L+ L L   
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLK-KLECLKSLDLFNC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 10/116 (8%)

Query: 124 ENNTNLNTLVLRNNSLSGPFRMPIQPH-WHLDTLYVSKNFFQ--GNIPLEIGVYFPRLVY 180
              +++  LVL N+  +      +      L+ L           N+P        +L  
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP-----KLNKLKK 68

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTG-EIPEHLAMSCFNLEFLVLSEN 235
           L LS N  +G +        +L  L+LS N++      E L     NL+ L L   
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK-KLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 244 KKNYLRKLVSLHLDANYFT-GEIPKSLSNCSHLEGLYMSDNNLY--GNIPAWLGNLSSLY 300
           +      +  L LD +    G++         LE L   +  L    N+P     L+ L 
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLK 67

Query: 301 DIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS 334
            + ++ N + G + +   +   L  L+LS N I 
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 200 NSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL--LGQLFSKKNYLRKLVSLHLD 257
           + ++ L L +++      E L      LEFL      L  +  L      L KL  L L 
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANL----PKLNKLKKLELS 72

Query: 258 ANYFTGEIPKSLSNCSHLEGLYMSDNNL 285
            N  +G +      C +L  L +S N +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 154 DTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD-MNSLEALDLSHNQL 212
             L ++ N F       I    P+L  +N S N     I     +  + +  + L+ N+L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 213 TGEIPEHLAMSCFNLEFLVLSEN---SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSL 269
              +   +     +L+ L+L  N    +    F     L  +  L L  N  T   P + 
Sbjct: 94  E-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQITTVAPGAF 149

Query: 270 SNCSHLEGLYMSDN 283
                L  L +  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 500 DLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554
            L+ N+L   +  ++   L  ++ L L  N +T V   +F  L+ V  L +  N +
Sbjct: 87  LLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 30/187 (16%), Positives = 58/187 (31%), Gaps = 57/187 (30%)

Query: 369 SSIVTLDLSYNSFSGYIPYWI-ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNN 427
                L L+ N F+      I ++L  LR +  +NN +             +  I L++N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 428 NIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFS 487
            +           ++ +           F                               
Sbjct: 92  RL----------ENVQHK---------MFKG----------------------------- 103

Query: 488 YKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVES 546
                L  +  + L  N++T  +       L+ +R L+L  N +T V P  F  L+ + +
Sbjct: 104 -----LESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157

Query: 547 LDISYNN 553
           L++   N
Sbjct: 158 LNL-LAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 13/132 (9%)

Query: 324 QILDLSENNISGSLPSCSSHSSITQVH---LSKNMLYGPLRYGTFFNRSSIVTLDLSYNS 380
             L L+ N  +  L +      + Q+     S N +   +  G F   S +  + L+ N 
Sbjct: 35  AELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNR 92

Query: 381 FSGYIPYWI-ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDN 439
               + + + + L  L+ L+L +N +          L  +RL+ L +N I    PG  D 
Sbjct: 93  LEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 440 TS------LHNN 445
                   L  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 4/113 (3%)

Query: 317 FCQLNYLQILDLSENNISGSLPSC--SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTL 374
           F +L  L+ ++ S N I+  +        S + ++ L+ N L   +++  F    S+ TL
Sbjct: 53  FKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTL 110

Query: 375 DLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNN 427
            L  N  +         L+ +R L L +N +    P     L  L  ++L  N
Sbjct: 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 14/134 (10%)

Query: 180 YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLT---GEIPEHLAMSCFNLEFLVLSEN- 235
            L L  N      P     + +L+ L L  NQL      + + L      L  L L  N 
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT----QLTVLDLGTNQ 99

Query: 236 --SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWL 293
              L   +F +   L  L  L +  N  T E+P+ +   +HL  L +  N L        
Sbjct: 100 LTVLPSAVFDR---LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF 155

Query: 294 GNLSSLYDIMMASN 307
             LSSL    +  N
Sbjct: 156 DRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 11/142 (7%)

Query: 288 NIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPS--CSSHSS 345
            IP     L       +  N +    P  F  L  L+ L L  N +  +LP     S + 
Sbjct: 37  GIPTNAQILY------LHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89

Query: 346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405
           +T + L  N L   L    F     +  L +  N  +  +P  IERLT+L +L L  N L
Sbjct: 90  LTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147

Query: 406 EGEVPIQLCRLKQLRLIDLSNN 427
           +        RL  L    L  N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 40/256 (15%), Positives = 82/256 (32%), Gaps = 32/256 (12%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
           + L  L+L    +        L     ++RL++                ++ L+V +  C
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-----------IEDAGLEVLASTC 337

Query: 62  NEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNW 121
            ++           P     +VAL+  G+ +           LE V +    +    L  
Sbjct: 338 KDL--RELRVFPSEPFVMEPNVALTEQGLVS----VSMGCPKLESVLYFCRQMTNAALIT 391

Query: 122 LLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL 181
           +  N  N+    L       P  + ++P   LD  + +           I  +   L  L
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYLTLEP---LDIGFGA-----------IVEHCKDLRRL 437

Query: 182 NLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ- 240
           +LS    +            +E L ++    +     H+   C +L  L + +     + 
Sbjct: 438 SLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497

Query: 241 LFSKKNYLRKLVSLHL 256
           L +  + L  + SL +
Sbjct: 498 LLANASKLETMRSLWM 513

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 58/379 (15%), Positives = 118/379 (31%), Gaps = 45/379 (11%)

Query: 79  QLESVALSGSGI----HATFPKFLYNQHDLEYVDFSD--SNLKGEFLNWLLENNTNLNTL 132
            L+ + L  S +          F      L  ++ S   S +    L  L+    NL +L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216

Query: 133 VLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYF-----PRLVYLNLSRND 187
            L            +Q    L+ L       +    +  G+         L  L+   + 
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 188 FNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNY 247
               +P+     + L  L+LS+  +       L   C  L+ L + +      L    + 
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336

Query: 248 LRKLVSLHLDA---------NYFTGEIPKSLS-NCSHLEGL-----YMSDNNLYGNIPAW 292
            + L  L +              T +   S+S  C  LE +      M++  L   I   
Sbjct: 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT-IARN 395

Query: 293 LGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLS 352
             N++           L   I  +      L+ LD+    I            + ++ LS
Sbjct: 396 RPNMTRF--------RLCI-IEPKAPDYLTLEPLDIGFGAIVEHCKD------LRRLSLS 440

Query: 353 KNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGY-IPYWIERLTYLRYLILAN-NNLEGEVP 410
             +      Y        +  L +++   S   + + +     LR L + +    +  + 
Sbjct: 441 GLLTDKVFEYIGT-YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499

Query: 411 IQLCRLKQLRLIDLSNNNI 429
               +L+ +R + +S+ ++
Sbjct: 500 ANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 34/213 (15%), Positives = 70/213 (32%), Gaps = 15/213 (7%)

Query: 87  GSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSL--SGPFR 144
           G  ++        +   LE +      +  + L  + ++  N   LVL +     +    
Sbjct: 90  GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA 149

Query: 145 MPIQPHWHLDTLYVSKNFFQ---GNIPLEIGVYFPRLVYLNLS--RNDFNGSIPSSIGD- 198
                  +L  L + ++      G+        +  LV LN+S   ++ + S    +   
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209

Query: 199 MNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLS------ENSLLGQLFSKKNYLRKLV 252
             +L++L L+      ++   L      LE L            +   L    +  ++L 
Sbjct: 210 CPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268

Query: 253 SLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL 285
            L    +     +P   S CS L  L +S   +
Sbjct: 269 CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 16/98 (16%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 191 SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL-----LGQLFSKK 245
            +P+   D   ++A+D + + +     +H+      +E + L +        L +L   +
Sbjct: 52  HLPTGPLDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLE 110

Query: 246 NYLRKLVSLHLDANY-FTGEIPKSLSNCSHLEGLYMSD 282
           N  + ++ + + +    T +   +L +  +L+ L++SD
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 500 DLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554
            L  N+ T  +P ++S    +  ++LS+N ++ +   +FSN+ Q+ +L +SYN L
Sbjct: 37  YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	699
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.25
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.82
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.03
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.02
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.91
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.21
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.03
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.94
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	80.84

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.7e-70  Score=624.61  Aligned_cols=617  Identities=30%  Similarity=0.427  Sum_probs=495.1

Q ss_pred             CCCCcEEeCCCCCCCCCCCc-ccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccc--------
Q 040184            1 MTSLRVLSLDLNQLTGNISS-SPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESS--------   71 (699)
Q Consensus         1 l~~L~~L~ls~n~l~~~i~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--------   71 (699)
                      +++|++|+|++|.++|.+|. ..++.+++|++|+|++|.+.+.++...+.++++|++|++++|.+....+..        
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A           99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred             CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence            35677777777777655543 136667777777777776665555443355666666666666554322111        


Q ss_pred             ---------------cCCCCCccccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCC
Q 040184           72 ---------------HSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRN  136 (699)
Q Consensus        72 ---------------~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~  136 (699)
                                     .....+.+|++|++++|.+++.+|. +.++++|++|++++|.+++.+|..+ .++++|++|++++
T Consensus       179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~  256 (768)
T 3rgz_A          179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISS  256 (768)
T ss_dssp             TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCS
T ss_pred             CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCC
Confidence                           1113455889999999988887776 8899999999999999987777764 8899999999999


Q ss_pred             CcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCcc
Q 040184          137 NSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEI  216 (699)
Q Consensus       137 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~  216 (699)
                      |.+.+..|..  .+++|++|++++|++++.+|..++..+++|++|++++|.+++..|..++.+++|++|++++|.+++.+
T Consensus       257 n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i  334 (768)
T 3rgz_A          257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL  334 (768)
T ss_dssp             SCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence            9998876654  88999999999999998899988887789999999999999999999999999999999999999899


Q ss_pred             chHHhhcCCCCcEEEccCCcCCccCcccccCCC-CCcEEEccCCcCCccCCccCcC--CCCCceEECCCCcCcCcCchhh
Q 040184          217 PEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLR-KLVSLHLDANYFTGEIPKSLSN--CSHLEGLYMSDNNLYGNIPAWL  293 (699)
Q Consensus       217 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~  293 (699)
                      |...+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++..+..+..  +++|+.|++++|++++..|..+
T Consensus       335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l  414 (768)
T 3rgz_A          335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL  414 (768)
T ss_dssp             CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred             CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence            988777899999999999999888899888887 9999999999999888887776  8899999999999999999999


Q ss_pred             hccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCC-CCCCccEEEccCccccccCCcccccCCCCcc
Q 040184          294 GNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS-SHSSITQVHLSKNMLYGPLRYGTFFNRSSIV  372 (699)
Q Consensus       294 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  372 (699)
                      .++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+ .+++|+.|++++|.+.+.++.. +..+++|+
T Consensus       415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~  493 (768)
T 3rgz_A          415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLN  493 (768)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCC
T ss_pred             hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCC
Confidence            999999999999999999999999999999999999999998887766 7899999999999998888776 89999999


Q ss_pred             EEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCC
Q 040184          373 TLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSL  452 (699)
Q Consensus       373 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~  452 (699)
                      +|++++|++++.+|.++..+++|++|++++|++.+.+|..+..+++|+.|++++|+++|.+|..+...............
T Consensus       494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~  573 (768)
T 3rgz_A          494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK  573 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred             EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999877653211100000000


Q ss_pred             -cccccc--------------cccccccCCCCcccccceeEEeeccee--eeeCCCCCCcccEEEccCCccCccCCcccc
Q 040184          453 -VPAFNH--------------NVRSTYSAGSSTMEKEESIMFTTKEIS--FSYKGKPLNKMYGVDLSCNKLTGEIPPQIS  515 (699)
Q Consensus       453 -~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  515 (699)
                       ......              ....................+......  .......+++|+.||+++|++++.+|..++
T Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  653 (768)
T 3rgz_A          574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG  653 (768)
T ss_dssp             EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence             000000              000000000000000000000000000  011223468899999999999999999999


Q ss_pred             ccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCC
Q 040184          516 KLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKED  595 (699)
Q Consensus       516 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~  595 (699)
                      .+++|+.|+|++|++++.+|..++++++|++|||++|+++|.+|..+..+++|++|++++|+++|.+|+. .++.++...
T Consensus       654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~  732 (768)
T 3rgz_A          654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPA  732 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGG
T ss_pred             ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999986 478899999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 040184          596 SYEGNPLLCGKPLPDCDVAAVPEASNEE  623 (699)
Q Consensus       596 ~~~~Np~~C~~~~~~c~~~~~~~~~~~~  623 (699)
                      ++.|||.+||.|++.|.......|+...
T Consensus       733 ~~~gN~~Lcg~~l~~C~~~~~~~~~~~~  760 (768)
T 3rgz_A          733 KFLNNPGLCGYPLPRCDPSNADGYAHHQ  760 (768)
T ss_dssp             GGCSCTEEESTTSCCCCSCC--------
T ss_pred             HhcCCchhcCCCCcCCCCCccCCCCCCC
Confidence            9999999999999899988887887444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8e-65  Score=582.50  Aligned_cols=591  Identities=27%  Similarity=0.365  Sum_probs=407.4

Q ss_pred             CCCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCc-ccccCCCCCcEEEcccCccccccccccCCCCCcc
Q 040184            1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSL-EPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQ   79 (699)
Q Consensus         1 l~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~   79 (699)
                      |+.|+.++++.+.+. .++. .|+.+++|++|+|++|.++|.++. ..+.++++|++|++++|.+....+... ...+.+
T Consensus        76 L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~  152 (768)
T 3rgz_A           76 LTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG-GLKLNS  152 (768)
T ss_dssp             CTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCS-CCCCTT
T ss_pred             cCcccccCCcCCCcC-CCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHH-hccCCC
Confidence            467788888888776 5566 699999999999999999987764 268999999999999998875543322 244568


Q ss_pred             ccEEEccCCcCccccchh---cCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEE
Q 040184           80 LESVALSGSGIHATFPKF---LYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL  156 (699)
Q Consensus        80 L~~L~ls~~~i~~~~~~~---l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  156 (699)
                      |++|++++|.+++..+..   +.++++|++|++++|.+.+..+.   ..+++|++|++++|.+.+..|. +..+++|++|
T Consensus       153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L  228 (768)
T 3rgz_A          153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL  228 (768)
T ss_dssp             CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEE
T ss_pred             CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEE
Confidence            999999999999888877   88999999999999999876653   6889999999999999887776 8899999999


Q ss_pred             EccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCc
Q 040184          157 YVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS  236 (699)
Q Consensus       157 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  236 (699)
                      ++++|++++.+|..+.. +++|++|++++|.+.+..|..  .+++|++|++++|.+++.+|..++..+++|++|++++|.
T Consensus       229 ~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~  305 (768)
T 3rgz_A          229 DISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH  305 (768)
T ss_dssp             ECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred             ECcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence            99999998777776655 788999999988888766654  778888888888888777777766545788888888888


Q ss_pred             CCccCcccccCCCCCcEEEccCCcCCccCCcc-CcCCCCCceEECCCCcCcCcCchhhhccC-CCcEEeccCCcccccCC
Q 040184          237 LLGQLFSKKNYLRKLVSLHLDANYFTGEIPKS-LSNCSHLEGLYMSDNNLYGNIPAWLGNLS-SLYDIMMASNHLQGPIP  314 (699)
Q Consensus       237 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~  314 (699)
                      +.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|++.+..|..+.+++ +|+.|++++|.+.+..|
T Consensus       306 l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~  385 (768)
T 3rgz_A          306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL  385 (768)
T ss_dssp             EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC
T ss_pred             CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC
Confidence            87777777888888888888888877666644 77777777777777777766676666655 56666666655554444


Q ss_pred             --------------------------ccccCCCCCcEEEcccccCcccCCCCC-CCCCccEEEccCccccccCCcccccC
Q 040184          315 --------------------------LEFCQLNYLQILDLSENNISGSLPSCS-SHSSITQVHLSKNMLYGPLRYGTFFN  367 (699)
Q Consensus       315 --------------------------~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~  367 (699)
                                                ..+..+++|++|++++|.+.+..|..+ .+++|+.|++++|.+.+.++.. +..
T Consensus       386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~  464 (768)
T 3rgz_A          386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMY  464 (768)
T ss_dssp             TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGG
T ss_pred             hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcC
Confidence                                      444444444555555444444444333 3445555555555554444433 445


Q ss_pred             CCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCc-cC--
Q 040184          368 RSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSL-HN--  444 (699)
Q Consensus       368 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~-~~--  444 (699)
                      +++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++.+|..+..+.- ..  
T Consensus       465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD  544 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred             CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence            555555555555555555555555555555555555555555555555555555555555555555544443220 00  


Q ss_pred             CC-CCCCCCcccccccccccccCCCCcccccceeEEeeccee---------eeeCC------CCCCcccEEEccCCccCc
Q 040184          445 NG-DNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS---------FSYKG------KPLNKMYGVDLSCNKLTG  508 (699)
Q Consensus       445 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~------~~l~~L~~L~Ls~n~l~~  508 (699)
                      .. ......++.........  ....................         ..+.+      ..++.+..++++.|.+.+
T Consensus       545 Ls~N~l~g~ip~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g  622 (768)
T 3rgz_A          545 LNTNLFNGTIPAAMFKQSGK--IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG  622 (768)
T ss_dssp             CCSSEEESBCCGGGGTTTTC--BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred             CCCCccCCcCChHHhcccch--hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence            00 00000000000000000  00000000000000000000         00000      112333445566677777


Q ss_pred             cCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcC
Q 040184          509 EIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQ  588 (699)
Q Consensus       509 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  588 (699)
                      .+|..+..+++|+.|+|++|++++.+|..++++++|+.|+|++|++++.+|..+..+++|+.|++++|+++|.+|..+..
T Consensus       623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence            77777888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccCCCCCCC
Q 040184          589 FTTFKEDSYEGNPLLC  604 (699)
Q Consensus       589 ~~~l~~~~~~~Np~~C  604 (699)
                      ++.|+.+++++|++..
T Consensus       703 l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          703 LTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             CCCCSEEECCSSEEEE
T ss_pred             CCCCCEEECcCCcccc
Confidence            9999999999998865

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.3e-60  Score=536.56  Aligned_cols=556  Identities=22%  Similarity=0.240  Sum_probs=355.8

Q ss_pred             CCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccE
Q 040184            3 SLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLES   82 (699)
Q Consensus         3 ~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~   82 (699)
                      ++++|++++|.++ .++...|.++++|++|++++|.+++ ++...|.++++|++|++++|.+.......  +..+.+|++
T Consensus        26 ~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--~~~l~~L~~  101 (680)
T 1ziw_A           26 NITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKT--FAFCTNLTE  101 (680)
T ss_dssp             TCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCCCCCTTT--TTTCTTCSE
T ss_pred             CCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccCccChhh--hccCCCCCE
Confidence            5666666666666 3444356666666666666666653 33345666666666666666665433222  234446666


Q ss_pred             EEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCC--CCCCCCEEEccC
Q 040184           83 VALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQ--PHWHLDTLYVSK  160 (699)
Q Consensus        83 L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~l~~  160 (699)
                      |++++|.+++..+..|.++++|++|++++|.+++..+.. +.++++|++|++++|.+++..+..+.  .+++|++|++++
T Consensus       102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             EECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence            666666666665566666666666666666666443333 35666666666666666554443322  345666666666


Q ss_pred             ccCCccCchhhhh--------------------------cCCCCcEEeCcCCcccccCCccccCCCC--CCEEEccCCcC
Q 040184          161 NFFQGNIPLEIGV--------------------------YFPRLVYLNLSRNDFNGSIPSSIGDMNS--LEALDLSHNQL  212 (699)
Q Consensus       161 n~i~~~~~~~~~~--------------------------~~~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~L~~n~l  212 (699)
                      |++++..|..+..                          ..++|+.|++++|.+.+..|..+..++.  |++|++++|.+
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            6665433322211                          0134555556666555555555555433  66666666666


Q ss_pred             CCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCc-----cCC----ccCcCCCCCceEECCCC
Q 040184          213 TGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTG-----EIP----KSLSNCSHLEGLYMSDN  283 (699)
Q Consensus       213 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-----~~~----~~~~~l~~L~~L~l~~n  283 (699)
                      + .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|...+     .+|    ..|..+++|+.|++++|
T Consensus       261 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n  339 (680)
T 1ziw_A          261 N-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN  339 (680)
T ss_dssp             C-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred             C-ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence            5 3333333455666666666666655555556666666666665543321     111    24555666666666666


Q ss_pred             cCcCcCchhhhccCCCcEEeccCCcccc--cCCccccCC--CCCcEEEcccccCcccCCCCC-CCCCccEEEccCccccc
Q 040184          284 NLYGNIPAWLGNLSSLYDIMMASNHLQG--PIPLEFCQL--NYLQILDLSENNISGSLPSCS-SHSSITQVHLSKNMLYG  358 (699)
Q Consensus       284 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~  358 (699)
                      .+.+..+..|.++++|+.|++++|.+..  .....|..+  ++|+.|++++|++.+..+..+ .+++|+.|++++|.+.+
T Consensus       340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  419 (680)
T 1ziw_A          340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ  419 (680)
T ss_dssp             CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred             ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence            6665555556666666666666654321  111222222  356666666666665555444 56666666666666655


Q ss_pred             cCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCC--CCCCcccCCCCCCCEEECcCCcccccCCCc
Q 040184          359 PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLE--GEVPIQLCRLKQLRLIDLSNNNIFGQIPGC  436 (699)
Q Consensus       359 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~  436 (699)
                      .++...|.++++|++|++++|++.+..+..+..+++|+.|++++|.+.  +..|..+..+++|+.|++++|++++..+..
T Consensus       420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~  499 (680)
T 1ziw_A          420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM  499 (680)
T ss_dssp             ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence            555444666666666666666666666666666666666666666654  345566666666667777666666554444


Q ss_pred             cccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCC-----
Q 040184          437 LDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP-----  511 (699)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----  511 (699)
                      +..                                                     +++|+.|++++|.+++..+     
T Consensus       500 ~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~  526 (680)
T 1ziw_A          500 LEG-----------------------------------------------------LEKLEILDLQHNNLARLWKHANPG  526 (680)
T ss_dssp             TTT-----------------------------------------------------CTTCCEEECCSSCCGGGGSTTSTT
T ss_pred             hcc-----------------------------------------------------ccccCEEeCCCCCccccchhhccC
Confidence            433                                                     4589999999999986422     


Q ss_pred             ---ccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCc-
Q 040184          512 ---PQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTA-  587 (699)
Q Consensus       512 ---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~-  587 (699)
                         ..|.++++|++|+|++|+++.+.+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++..|..+. 
T Consensus       527 ~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  606 (680)
T 1ziw_A          527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP  606 (680)
T ss_dssp             SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHH
T ss_pred             CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcc
Confidence               2478999999999999999977777899999999999999999987777889999999999999999998887665 


Q ss_pred             CCCCCCCCccCCCCCCCCCCCCCCCC-CCCCCCCCc
Q 040184          588 QFTTFKEDSYEGNPLLCGKPLPDCDV-AAVPEASNE  622 (699)
Q Consensus       588 ~~~~l~~~~~~~Np~~C~~~~~~c~~-~~~~~~~~~  622 (699)
                      .+++++.+++++|||.|     +|+. .|+..|...
T Consensus       607 ~~~~L~~l~l~~N~~~c-----~c~~~~~~~~~~~~  637 (680)
T 1ziw_A          607 AFRNLTELDMRFNPFDC-----TCESIAWFVNWINE  637 (680)
T ss_dssp             HHTTCSEEECTTCCCCB-----CCCCCSSEECCSSC
T ss_pred             cccccCEEEccCCCccc-----CCccHHHHHHHHHh
Confidence            67899999999999999     8986 888888743

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.1e-55  Score=500.26  Aligned_cols=532  Identities=20%  Similarity=0.173  Sum_probs=446.5

Q ss_pred             CCCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccc
Q 040184            1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQL   80 (699)
Q Consensus         1 l~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L   80 (699)
                      +++|++|++++|.+++..+. +|+++++|++|+|++|.++ .++...|.++++|++|++++|.+....+..  +..+.+|
T Consensus        48 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L  123 (680)
T 1ziw_A           48 YSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNP--FVKQKNL  123 (680)
T ss_dssp             GTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCT--TTTCTTC
T ss_pred             CCcCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhH--ccccCCC
Confidence            47899999999999955555 8999999999999999998 678778999999999999999987654433  3566699


Q ss_pred             cEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhh-hhCCCCCCEEEcCCCcCcccCCCCCCCC---------
Q 040184           81 ESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWL-LENNTNLNTLVLRNNSLSGPFRMPIQPH---------  150 (699)
Q Consensus        81 ~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l---------  150 (699)
                      ++|++++|.+++..+..+.++++|++|++++|.+++..+..+ +..+++|++|++++|.+.+..+..+..+         
T Consensus       124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  203 (680)
T 1ziw_A          124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN  203 (680)
T ss_dssp             CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred             CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence            999999999999999999999999999999999985554432 1356899999999999998877766544         


Q ss_pred             ------------------CCCCEEEccCccCCccCchhhhhcC--CCCcEEeCcCCcccccCCccccCCCCCCEEEccCC
Q 040184          151 ------------------WHLDTLYVSKNFFQGNIPLEIGVYF--PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHN  210 (699)
Q Consensus       151 ------------------~~L~~L~l~~n~i~~~~~~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  210 (699)
                                        ++|+.|++++|.+++..|..+.. +  ++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus       204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  282 (680)
T 1ziw_A          204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN  282 (680)
T ss_dssp             TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC
Confidence                              56788888888888665655544 4  35999999999999888899999999999999999


Q ss_pred             cCCCccchHHhhcCCCCcEEEccCCcCCc-----cCc----ccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECC
Q 040184          211 QLTGEIPEHLAMSCFNLEFLVLSENSLLG-----QLF----SKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMS  281 (699)
Q Consensus       211 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  281 (699)
                      .+++ ++...+.++++|++|++++|...+     .+|    ..+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus       283 ~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  361 (680)
T 1ziw_A          283 NIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS  361 (680)
T ss_dssp             CBSE-ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT
T ss_pred             ccCc-cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC
Confidence            9984 444445689999999999875432     222    267889999999999999999888999999999999999


Q ss_pred             CCcCcC--cCchhhhcc--CCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCC--CCCCCCccEEEccCcc
Q 040184          282 DNNLYG--NIPAWLGNL--SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPS--CSSHSSITQVHLSKNM  355 (699)
Q Consensus       282 ~n~l~~--~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~--~~~~~~L~~L~l~~n~  355 (699)
                      +|.+..  ..+..|..+  ++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.++.  +..+++|++|++++|.
T Consensus       362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  441 (680)
T 1ziw_A          362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK  441 (680)
T ss_dssp             TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred             CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence            997542  223334433  5899999999999999999999999999999999999876653  3388999999999999


Q ss_pred             ccccCCcccccCCCCccEEECCCCCCC--CCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccC
Q 040184          356 LYGPLRYGTFFNRSSIVTLDLSYNSFS--GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQI  433 (699)
Q Consensus       356 ~~~~~~~~~~~~~~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~  433 (699)
                      +.+..+.. |..+++|+.|++++|.+.  +..|..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..
T Consensus       442 l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~  520 (680)
T 1ziw_A          442 YLQLTRNS-FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW  520 (680)
T ss_dssp             EEECCTTT-TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGG
T ss_pred             cceeChhh-hhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccc
Confidence            87655544 889999999999999987  467889999999999999999999888888999999999999999998654


Q ss_pred             CCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCcc
Q 040184          434 PGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ  513 (699)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  513 (699)
                      +..+.....                                             .....+++|+.|++++|+++...+..
T Consensus       521 ~~~~~~~~~---------------------------------------------~~~~~l~~L~~L~L~~N~l~~i~~~~  555 (680)
T 1ziw_A          521 KHANPGGPI---------------------------------------------YFLKGLSHLHILNLESNGFDEIPVEV  555 (680)
T ss_dssp             STTSTTSCC---------------------------------------------CTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             hhhccCCcc---------------------------------------------hhhcCCCCCCEEECCCCCCCCCCHHH
Confidence            332211000                                             00023579999999999999666667


Q ss_pred             ccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccc-cCCCCCeeecccCcCcccCCC
Q 040184          514 ISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLV-ELNALAFFSVAHNNLSGKIPE  584 (699)
Q Consensus       514 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l~~N~l~~~~~~  584 (699)
                      |.++++|++|+|++|+++++.+..|..+++|+.|+|++|++++..|..+. .+++|+.+++++|++.|.++.
T Consensus       556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             cccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            99999999999999999988888899999999999999999988887777 789999999999999998874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-56  Score=519.89  Aligned_cols=526  Identities=19%  Similarity=0.175  Sum_probs=413.5

Q ss_pred             cEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEE
Q 040184            5 RVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVA   84 (699)
Q Consensus         5 ~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~   84 (699)
                      +..+.++++++ .+|.    ..++|++|||++|.++ .+....|.++++|++|++++|...... ....+..+.+|++|+
T Consensus         7 ~~~dcs~~~L~-~vP~----lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~   79 (844)
T 3j0a_A            7 RIAFYRFCNLT-QVPQ----VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILD   79 (844)
T ss_dssp             EEEEESCCCSS-CCCS----SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEE-CTTTTSSCTTCCEEE
T ss_pred             eEEEccCCCCC-CCCC----CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCcccc-CHHHhcCCCCCCEEE
Confidence            46788888888 7775    4578999999999998 455567899999999999998553322 122345666899999


Q ss_pred             ccCCcCccccchhcCCCCCCCEEEcccCccccccchh-hhhCCCCCCEEEcCCCcCcccCC-CCCCCCCCCCEEEccCcc
Q 040184           85 LSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNW-LLENNTNLNTLVLRNNSLSGPFR-MPIQPHWHLDTLYVSKNF  162 (699)
Q Consensus        85 ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~  162 (699)
                      |++|.+.+..|.+|.++++|++|++++|.+++.+|.. .+.++++|++|++++|.+.+..+ ..++++++|++|++++|.
T Consensus        80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A           80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence            9999998888999999999999999999998755543 35789999999999999887654 468899999999999999


Q ss_pred             CCccCchhhhhcC--CCCcEEeCcCCcccccCCccccCCCC------CCEEEccCCcCCCccchHHhhc--CCCCcEEEc
Q 040184          163 FQGNIPLEIGVYF--PRLVYLNLSRNDFNGSIPSSIGDMNS------LEALDLSHNQLTGEIPEHLAMS--CFNLEFLVL  232 (699)
Q Consensus       163 i~~~~~~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~~~~--l~~L~~L~L  232 (699)
                      +++..+..+.. +  ++|+.|++++|.+.+..|..+..+++      |+.|++++|.+++.++..+...  ..+++.+.+
T Consensus       160 i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l  238 (844)
T 3j0a_A          160 IFLVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL  238 (844)
T ss_dssp             CCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred             CCeeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence            98766666654 3  68999999999998888877776665      9999999998887776665432  256788887


Q ss_pred             cCC---------cCCccCcccccCC--CCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcE
Q 040184          233 SEN---------SLLGQLFSKKNYL--RKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYD  301 (699)
Q Consensus       233 ~~n---------~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  301 (699)
                      +.+         .+.......|.++  ++|++|++++|.+.+..+..|..+++|+.|++++|++.+..+..|.++++|+.
T Consensus       239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  318 (844)
T 3j0a_A          239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV  318 (844)
T ss_dssp             CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred             ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence            633         2222333444443  67899999999988888888888999999999999988887888888899999


Q ss_pred             EeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCC-CCCCccEEEccCccccccCCcccccCCCCccEEECCCCC
Q 040184          302 IMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS-SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNS  380 (699)
Q Consensus       302 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~  380 (699)
                      |++++|.+.+..+..|..+++|+.|++++|.+....+..+ .+++|+.|++++|.+.+      +..+++|+.|++++|+
T Consensus       319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~L~~L~l~~N~  392 (844)
T 3j0a_A          319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNK  392 (844)
T ss_dssp             EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC------CSSCCSCSEEEEESCC
T ss_pred             EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc------ccCCCCcchhccCCCC
Confidence            9999999888888888899999999999998876666544 68889999999988854      3337788999999998


Q ss_pred             CCCCcChhhhcCCCCCEEEcccCcCCCCCC-cccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccccc
Q 040184          381 FSGYIPYWIERLTYLRYLILANNNLEGEVP-IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHN  459 (699)
Q Consensus       381 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (699)
                      ++.. |..   ..+++.|++++|++.+... ..+..+++|+.|++++|++++..+....                     
T Consensus       393 l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------------  447 (844)
T 3j0a_A          393 LVTL-PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP---------------------  447 (844)
T ss_dssp             CCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS---------------------
T ss_pred             cccc-ccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc---------------------
Confidence            8743 332   4678899999998885432 3356788999999999988754332110                     


Q ss_pred             ccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccC-----ccCCccccccCccCeEEccCCcCcccC
Q 040184          460 VRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT-----GEIPPQISKLTRIRALNLSHNNLTGVI  534 (699)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~  534 (699)
                                                     ..+++|+.|++++|.++     +..+..|.++++|++|+|++|++++.+
T Consensus       448 -------------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  496 (844)
T 3j0a_A          448 -------------------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP  496 (844)
T ss_dssp             -------------------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCC
T ss_pred             -------------------------------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccC
Confidence                                           12457888999999886     344566888899999999999999888


Q ss_pred             CccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCC
Q 040184          535 PVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCG  605 (699)
Q Consensus       535 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~  605 (699)
                      |..|..+++|+.|+|++|++++..|..+.  ++|+.|++++|++++..|..+   ..++.+++++|||.|.
T Consensus       497 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          497 PGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICE  562 (844)
T ss_dssp             TTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred             hhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccc
Confidence            88889999999999999999877666665  789999999999998888754   5778888999999993

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.4e-56  Score=497.31  Aligned_cols=541  Identities=19%  Similarity=0.216  Sum_probs=448.3

Q ss_pred             cEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEE
Q 040184            5 RVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVA   84 (699)
Q Consensus         5 ~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~   84 (699)
                      +.++.++..++ .+|. .+.  +++++|++++|.++ .+++..|.++++|++|++++|.+....+..  +..+.+|++|+
T Consensus        15 ~~~~c~~~~l~-~iP~-~l~--~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~   87 (606)
T 3t6q_A           15 KTYNCENLGLN-EIPG-TLP--NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDT--FQSQHRLDTLV   87 (606)
T ss_dssp             TEEECTTSCCS-SCCT-TSC--TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTT--TTTCTTCCEEE
T ss_pred             ceEECCCCCcc-cCcC-CCC--CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhh--ccCccccCeee
Confidence            56888888888 7887 443  48999999999998 566678999999999999999987765444  35566999999


Q ss_pred             ccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCC
Q 040184           85 LSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQ  164 (699)
Q Consensus        85 ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~  164 (699)
                      +++|.+++..|..|.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+.....+..+++|++|++++|+++
T Consensus        88 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  166 (606)
T 3t6q_A           88 LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH  166 (606)
T ss_dssp             CTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred             CCCCcccccChhhhcccccccEeeccccCcccCCcch-hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence            9999999999999999999999999999998533333 589999999999999999865555666999999999999998


Q ss_pred             ccCchhhhhcCCCCc--EEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCC----
Q 040184          165 GNIPLEIGVYFPRLV--YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL----  238 (699)
Q Consensus       165 ~~~~~~~~~~~~~L~--~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~----  238 (699)
                      +..+..+. .+++|+  +|++++|.+.+..|..+.. .+|+.|++++|.   .++... ..+.+++...+....+.    
T Consensus       167 ~~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~-~~l~~~~l~~l~~~~~~~~~~  240 (606)
T 3t6q_A          167 YLSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIF-KGLKNSTIQSLWLGTFEDMDD  240 (606)
T ss_dssp             EECHHHHH-TTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHH-HHTTTCEEEEEECCCCTTSCC
T ss_pred             ccChhhhh-hhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHh-hhccccchhheechhhccccc
Confidence            54444444 478999  8999999999877777654 689999999986   233332 34555544444332221    


Q ss_pred             -ccCcccccCCC--CCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCc
Q 040184          239 -GQLFSKKNYLR--KLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPL  315 (699)
Q Consensus       239 -~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  315 (699)
                       ...+..+..+.  +|++|++++|.+++..+..|+.+++|+.|++++|+++ .+|..+.++++|+.|++++|.+.+..|.
T Consensus       241 ~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~  319 (606)
T 3t6q_A          241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI  319 (606)
T ss_dssp             CCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred             cccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchh
Confidence             12223333333  7899999999999888888999999999999999988 6777888899999999999999888888


Q ss_pred             cccCCCCCcEEEcccccCcccCCCC--CCCCCccEEEccCccccccC--CcccccCCCCccEEECCCCCCCCCcChhhhc
Q 040184          316 EFCQLNYLQILDLSENNISGSLPSC--SSHSSITQVHLSKNMLYGPL--RYGTFFNRSSIVTLDLSYNSFSGYIPYWIER  391 (699)
Q Consensus       316 ~~~~l~~L~~L~l~~n~i~~~~~~~--~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  391 (699)
                      .+..+++|++|++++|.+.+..+..  ..+++|++|++++|.+.+..  +. .+..+++|++|++++|.+.+..+..+..
T Consensus       320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~  398 (606)
T 3t6q_A          320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLNLSYNEPLSLKTEAFKE  398 (606)
T ss_dssp             CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-TTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred             hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch-hcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence            8999999999999999888655542  37899999999999986654  33 3888999999999999999888999999


Q ss_pred             CCCCCEEEcccCcCCCCCCc-ccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCc
Q 040184          392 LTYLRYLILANNNLEGEVPI-QLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSST  470 (699)
Q Consensus       392 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (699)
                      +++|++|++++|++.+..+. .+..+++|+.|++++|.+.+..|..+..                               
T Consensus       399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------  447 (606)
T 3t6q_A          399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-------------------------------  447 (606)
T ss_dssp             CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT-------------------------------
T ss_pred             CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC-------------------------------
Confidence            99999999999999876554 4889999999999999998777766544                               


Q ss_pred             ccccceeEEeecceeeeeCCCCCCcccEEEccCCccCcc---CCccccccCccCeEEccCCcCcccCCccccCCCCCCEE
Q 040184          471 MEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE---IPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESL  547 (699)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  547 (699)
                                            +++|+.|++++|++++.   .+..+..+++|++|++++|++++..|..|+.+++|++|
T Consensus       448 ----------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  505 (606)
T 3t6q_A          448 ----------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV  505 (606)
T ss_dssp             ----------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ----------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence                                  45899999999999863   33668999999999999999999999999999999999


Q ss_pred             eCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184          548 DISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS  620 (699)
Q Consensus       548 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~  620 (699)
                      +|++|++++..|..+..+++| .|++++|++++..|..+..+++++.+++++||+.|     +|+..|+..|.
T Consensus       506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c-----~c~~~~~~~w~  572 (606)
T 3t6q_A          506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC-----TCSNIYFLEWY  572 (606)
T ss_dssp             ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC-----SGGGHHHHHHH
T ss_pred             ECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc-----cCCcHHHHHHH
Confidence            999999999999999999999 99999999999988888888999999999999999     88876666655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.3e-55  Score=490.36  Aligned_cols=541  Identities=18%  Similarity=0.162  Sum_probs=451.5

Q ss_pred             CcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEE
Q 040184            4 LRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESV   83 (699)
Q Consensus         4 L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L   83 (699)
                      -++++.++++++ .+|. .+.  ++|++|++++|.++ .++...|.++++|++|++++|.+....+..  +..+.+|++|
T Consensus        13 ~~~~~c~~~~l~-~ip~-~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~--~~~l~~L~~L   85 (606)
T 3vq2_A           13 NITYQCMDQKLS-KVPD-DIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKA--WHGLHHLSNL   85 (606)
T ss_dssp             TTEEECTTSCCS-SCCT-TSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCCEE
T ss_pred             CCceEccCCCcc-cCCC-CCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHH--hhchhhcCEe
Confidence            357899999998 8887 343  89999999999998 566677999999999999999988765443  3556699999


Q ss_pred             EccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcc-cCCCCCCCCCCCCEEEccCcc
Q 040184           84 ALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSG-PFRMPIQPHWHLDTLYVSKNF  162 (699)
Q Consensus        84 ~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~  162 (699)
                      ++++|.+++..|..|.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+ .+|..++++++|++|++++|+
T Consensus        86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A           86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             ECCCCcccccChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            99999999999999999999999999999998433344 6899999999999999986 468889999999999999999


Q ss_pred             CCccCchhhhhcCCC----CcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCC
Q 040184          163 FQGNIPLEIGVYFPR----LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL  238 (699)
Q Consensus       163 i~~~~~~~~~~~~~~----L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  238 (699)
                      +++..+..+.. +++    +++|++++|.+++..+..+... +|++|++++|.+.+......+.+++.++.+++..+.+.
T Consensus       165 l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~  242 (606)
T 3vq2_A          165 IQTITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK  242 (606)
T ss_dssp             CCEECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred             ceecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence            98655544433 334    4589999999997766666555 89999999999875555555678999999988765443


Q ss_pred             c------cCcccccCCC--CCcEEEc-cCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcc
Q 040184          239 G------QLFSKKNYLR--KLVSLHL-DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHL  309 (699)
Q Consensus       239 ~------~~~~~~~~l~--~L~~L~L-~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  309 (699)
                      .      ..+..+..+.  .++.+++ ..+.+.+..|. +..+++|+.|++++|.+.. +| .+..+++|+.|++++|.+
T Consensus       243 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l  319 (606)
T 3vq2_A          243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL  319 (606)
T ss_dssp             TSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC
T ss_pred             cCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC
Confidence            2      1112222222  4666777 67778877776 8999999999999999974 55 788899999999999999


Q ss_pred             cccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccC--CcccccCCCCccEEECCCCCCCCCcCh
Q 040184          310 QGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPL--RYGTFFNRSSIVTLDLSYNSFSGYIPY  387 (699)
Q Consensus       310 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~Ls~n~i~~~~~~  387 (699)
                       +.+| .+ .+++|+.|++++|...+.. ....+++|+.|++++|.+.+..  +.. +..+++|++|++++|.+++ .|.
T Consensus       320 -~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~l~~-~~~  393 (606)
T 3vq2_A          320 -KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYS-DLGTNSLRHLDLSFNGAII-MSA  393 (606)
T ss_dssp             -SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHH-HHCCSCCCEEECCSCSEEE-ECC
T ss_pred             -cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhh-hccCCcccEeECCCCcccc-chh
Confidence             5677 45 8999999999999766544 4448899999999999987652  443 7899999999999999885 557


Q ss_pred             hhhcCCCCCEEEcccCcCCCCCC-cccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccC
Q 040184          388 WIERLTYLRYLILANNNLEGEVP-IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSA  466 (699)
Q Consensus       388 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (699)
                      .+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+..                           
T Consensus       394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------  446 (606)
T 3vq2_A          394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG---------------------------  446 (606)
T ss_dssp             CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT---------------------------
T ss_pred             hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC---------------------------
Confidence            88999999999999999998777 68899999999999999999888776654                           


Q ss_pred             CCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCc-cCCccccccCccCeEEccCCcCcccCCccccCCCCCC
Q 040184          467 GSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG-EIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVE  545 (699)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  545 (699)
                                                +++|+.|++++|.+++ .+|..+..+++|++|+|++|++++..|..|+.+++|+
T Consensus       447 --------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  500 (606)
T 3vq2_A          447 --------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ  500 (606)
T ss_dssp             --------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             --------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence                                      3589999999999997 4788999999999999999999999999999999999


Q ss_pred             EEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCC-CCCCCccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 040184          546 SLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFT-TFKEDSYEGNPLLCGKPLPDCDVAAVPEASNE  622 (699)
Q Consensus       546 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~~~  622 (699)
                      +|++++|++++..|..+..+++|++|++++|+++. +|..+..++ +++.+++++||+.|     +|+..|+..|...
T Consensus       501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c-----~c~~~~~~~~l~~  572 (606)
T 3vq2_A          501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVAC-----ICEHQKFLQWVKE  572 (606)
T ss_dssp             EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCC-----SSTTHHHHTTTTT
T ss_pred             EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCccc-----CCccHHHHHHHHc
Confidence            99999999999889999999999999999999994 565577776 59999999999999     8988887777643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.2e-54  Score=483.97  Aligned_cols=515  Identities=19%  Similarity=0.180  Sum_probs=436.4

Q ss_pred             CCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCcccc
Q 040184            2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLE   81 (699)
Q Consensus         2 ~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~   81 (699)
                      +++++|++++|.++ .+++.+|+++++|++|+|++|.+.+ +.+..|.++++|++|++++|.+....+..  +..+.+|+
T Consensus        33 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~  108 (606)
T 3t6q_A           33 NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETA--LSGPKALK  108 (606)
T ss_dssp             TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEECTTT--TSSCTTCC
T ss_pred             CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCCcccccChhh--hccccccc
Confidence            46899999999999 5544489999999999999999984 55577999999999999999998765444  35566999


Q ss_pred             EEEccCCcCccccchhcCCCCCCCEEEcccCccccc-cchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCC--EEEc
Q 040184           82 SVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGE-FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLD--TLYV  158 (699)
Q Consensus        82 ~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~--~L~l  158 (699)
                      +|++++|.+++..+..+.++++|++|++++|.+++. .|..  ..+++|++|++++|.+.+..+..+..+++|+  .|++
T Consensus       109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l  186 (606)
T 3t6q_A          109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG--FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL  186 (606)
T ss_dssp             EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT--CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred             EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccc--cCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence            999999999988888899999999999999999852 2433  4699999999999999988888889999999  8999


Q ss_pred             cCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCC----CccchHHhhcCC--CCcEEEc
Q 040184          159 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLT----GEIPEHLAMSCF--NLEFLVL  232 (699)
Q Consensus       159 ~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~--~L~~L~L  232 (699)
                      ++|.+++..| ..+. ..+|+.|++++|..   .+..+..+..++...+....+.    ..++...+..+.  +|++|++
T Consensus       187 ~~n~l~~~~~-~~~~-~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l  261 (606)
T 3t6q_A          187 NGNDIAGIEP-GAFD-SAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL  261 (606)
T ss_dssp             TTCCCCEECT-TTTT-TCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred             CCCccCccCh-hHhh-hccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence            9999985444 4454 35899999999872   3444555555544433322221    134444444443  7999999


Q ss_pred             cCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCccccc
Q 040184          233 SENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGP  312 (699)
Q Consensus       233 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  312 (699)
                      ++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus       262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  340 (606)
T 3t6q_A          262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE  340 (606)
T ss_dssp             TTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred             ecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence            999999888888999999999999999999 6788899999999999999999988888999999999999999998865


Q ss_pred             CCc-cccCCCCCcEEEcccccCcccC--CC-CCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcC-h
Q 040184          313 IPL-EFCQLNYLQILDLSENNISGSL--PS-CSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIP-Y  387 (699)
Q Consensus       313 ~~~-~~~~l~~L~~L~l~~n~i~~~~--~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~-~  387 (699)
                      ++. .+..+++|++|++++|.+.+..  +. ...+++|+.|++++|.+.+..+.. +..+++|++|++++|.+++..+ .
T Consensus       341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~  419 (606)
T 3t6q_A          341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLKVKDAQS  419 (606)
T ss_dssp             CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCCEECCTTCC
T ss_pred             cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCcCCCcccch
Confidence            554 5889999999999999998764  43 348899999999999997765554 8899999999999999987654 4


Q ss_pred             hhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccC-C--CccccCCccCCCCCCCCCcccccccccccc
Q 040184          388 WIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQI-P--GCLDNTSLHNNGDNDDSLVPAFNHNVRSTY  464 (699)
Q Consensus       388 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (699)
                      .+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.. +  ..+.                          
T Consensus       420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--------------------------  473 (606)
T 3t6q_A          420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ--------------------------  473 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG--------------------------
T ss_pred             hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc--------------------------
Confidence            5889999999999999999888999999999999999999997632 1  2222                          


Q ss_pred             cCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCC
Q 040184          465 SAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV  544 (699)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  544 (699)
                                                 .+++|+.|++++|++++..|..|..+++|++|+|++|++++..|..+..+++|
T Consensus       474 ---------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          474 ---------------------------TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             ---------------------------GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred             ---------------------------cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence                                       25699999999999999999999999999999999999999999999999999


Q ss_pred             CEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCC
Q 040184          545 ESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP  583 (699)
Q Consensus       545 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~  583 (699)
                       +|++++|++++..|..+..+++|+.|++++|++.|.++
T Consensus       527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             -EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence             99999999999888899999999999999999998776

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-53  Score=494.36  Aligned_cols=516  Identities=21%  Similarity=0.194  Sum_probs=433.3

Q ss_pred             CCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCcccc
Q 040184            2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLE   81 (699)
Q Consensus         2 ~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~   81 (699)
                      +++++|+|++|.+++..+. .|.++++|++|+|++|...+.+++.+|.++++|++|+|++|.+....+..+  ..+.+|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~  100 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF--QGLFHLF  100 (844)
T ss_dssp             TTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS--CSCSSCC
T ss_pred             CCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc--cCCcccC
Confidence            6899999999999954455 899999999999999977678877889999999999999999987655443  5666999


Q ss_pred             EEEccCCcCccccchh--cCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCC--CCCCEEE
Q 040184           82 SVALSGSGIHATFPKF--LYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPH--WHLDTLY  157 (699)
Q Consensus        82 ~L~ls~~~i~~~~~~~--l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~  157 (699)
                      +|++++|.+++..+..  +.++++|++|++++|.+++..+...|.++++|++|++++|.+.+..+..+..+  ++|+.|+
T Consensus       101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred             EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence            9999999998866654  89999999999999999866554556999999999999999998888888877  8999999


Q ss_pred             ccCccCCccCchhhhhcCC------CCcEEeCcCCcccccCCccccCC---CCCCEEEccCCc---------CCCccchH
Q 040184          158 VSKNFFQGNIPLEIGVYFP------RLVYLNLSRNDFNGSIPSSIGDM---NSLEALDLSHNQ---------LTGEIPEH  219 (699)
Q Consensus       158 l~~n~i~~~~~~~~~~~~~------~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~n~---------l~~~~~~~  219 (699)
                      +++|.+.+..|..+.. ++      .|++|++++|.+.+..+..+...   ..++.|.++.+.         +. .....
T Consensus       181 L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~-~~~~~  258 (844)
T 3j0a_A          181 LAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQN  258 (844)
T ss_dssp             ECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST-TGGGT
T ss_pred             CCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC-CCChh
Confidence            9999998777765443 23      49999999999887777766543   578888887433         22 22233


Q ss_pred             HhhcC--CCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccC
Q 040184          220 LAMSC--FNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS  297 (699)
Q Consensus       220 ~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  297 (699)
                      .+.++  ++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+.+|..+++|+.|++++|.+++..+..|.+++
T Consensus       259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  338 (844)
T 3j0a_A          259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP  338 (844)
T ss_dssp             TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred             hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence            33333  7899999999999988899999999999999999999988899999999999999999999988889999999


Q ss_pred             CCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECC
Q 040184          298 SLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLS  377 (699)
Q Consensus       298 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls  377 (699)
                      +|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..    .+++|+.+++++|++.. ++.    ...+++.++++
T Consensus       339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~L~~L~l~~N~l~~-l~~----~~~~l~~L~ls  409 (844)
T 3j0a_A          339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLVT-LPK----INLTANLIHLS  409 (844)
T ss_dssp             TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCCSCSEEEEESCCCCC-CCC----CCTTCCEEECC
T ss_pred             CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc----CCCCcchhccCCCCccc-ccc----cccccceeecc
Confidence            9999999999999888888999999999999999998432    27889999999999963 332    25679999999


Q ss_pred             CCCCCCCc-ChhhhcCCCCCEEEcccCcCCCCCCc-ccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccc
Q 040184          378 YNSFSGYI-PYWIERLTYLRYLILANNNLEGEVPI-QLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPA  455 (699)
Q Consensus       378 ~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (699)
                      +|++++.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+.....-.              
T Consensus       410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~--------------  475 (844)
T 3j0a_A          410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV--------------  475 (844)
T ss_dssp             SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC--------------
T ss_pred             cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh--------------
Confidence            99998754 33456899999999999999865443 466789999999999999744332111000              


Q ss_pred             ccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCC
Q 040184          456 FNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP  535 (699)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  535 (699)
                                                        ...+++|+.|+|++|.+++..|..|..+++|++|+|++|++++.++
T Consensus       476 ----------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~  521 (844)
T 3j0a_A          476 ----------------------------------FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH  521 (844)
T ss_dssp             ----------------------------------SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCC
T ss_pred             ----------------------------------hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccCh
Confidence                                              0235689999999999999999999999999999999999998888


Q ss_pred             ccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCC
Q 040184          536 VTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPE  584 (699)
Q Consensus       536 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~  584 (699)
                      ..+.  ++|+.|+|++|++++..|..+   ++|+.+++++|++.|.++-
T Consensus       522 ~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          522 NDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred             hhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence            7776  899999999999999888765   4799999999999998773

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.2e-52  Score=471.31  Aligned_cols=512  Identities=18%  Similarity=0.172  Sum_probs=434.8

Q ss_pred             CCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCcccc
Q 040184            2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLE   81 (699)
Q Consensus         2 ~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~   81 (699)
                      +++++|++++|.++ .++..+|.++++|++|++++|.++ .+++..|.++++|++|++++|.+....+..+  ..+.+|+
T Consensus        32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~  107 (606)
T 3vq2_A           32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSF--SGLTSLE  107 (606)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSS--TTCTTCC
T ss_pred             CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhc--CCcccCC
Confidence            57999999999999 454448999999999999999998 5655779999999999999999987655443  5566999


Q ss_pred             EEEccCCcCccccchhcCCCCCCCEEEcccCcccc-ccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCC----EE
Q 040184           82 SVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKG-EFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLD----TL  156 (699)
Q Consensus        82 ~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~----~L  156 (699)
                      +|++++|.+++..+..++++++|++|++++|.+++ .+|.. +.++++|++|++++|.+.+..+..++.+++|+    +|
T Consensus       108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L  186 (606)
T 3vq2_A          108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL  186 (606)
T ss_dssp             EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred             EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence            99999999998888889999999999999999985 56776 48999999999999999998888888777665    89


Q ss_pred             EccCccCCccCchhhhhcCCCCcEEeCcCCccc-ccCCccccCCCCCCEEEccCCcCCC-----ccchHHhhcCC--CCc
Q 040184          157 YVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFN-GSIPSSIGDMNSLEALDLSHNQLTG-----EIPEHLAMSCF--NLE  228 (699)
Q Consensus       157 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~--~L~  228 (699)
                      ++++|+++ .++...+... +|++|++++|.+. +..|..+.+++.|+.+++..+.+.+     .++...+..+.  .++
T Consensus       187 ~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~  264 (606)
T 3vq2_A          187 DMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID  264 (606)
T ss_dssp             ECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred             eccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence            99999998 6677777644 8999999999986 4677889999999998886554331     22233322222  466


Q ss_pred             EEEc-cCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCC
Q 040184          229 FLVL-SENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASN  307 (699)
Q Consensus       229 ~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  307 (699)
                      .+++ ..+.+.+..+. +..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|
T Consensus       265 ~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n  338 (606)
T 3vq2_A          265 EFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMN  338 (606)
T ss_dssp             EEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESC
T ss_pred             heeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCC
Confidence            7777 66777777776 889999999999999997 455 789999999999999999 4677 45 8999999999999


Q ss_pred             cccccCCccccCCCCCcEEEcccccCcccC--CCCC-CCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCC
Q 040184          308 HLQGPIPLEFCQLNYLQILDLSENNISGSL--PSCS-SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGY  384 (699)
Q Consensus       308 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~  384 (699)
                      ...+..  .+..+++|++|++++|.+.+..  +..+ .+++|+.|++++|.+.+ ++ ..+..+++|+.|++++|.+.+.
T Consensus       339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~-~~~~~l~~L~~L~l~~n~l~~~  414 (606)
T 3vq2_A          339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS-ANFMGLEELQHLDFQHSTLKRV  414 (606)
T ss_dssp             SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC-CCCTTCTTCCEEECTTSEEEST
T ss_pred             cCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch-hhccCCCCCCeeECCCCccCCc
Confidence            655433  5778999999999999998652  3333 78999999999999865 33 3488999999999999999988


Q ss_pred             cC-hhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccc-cCCCccccCCccCCCCCCCCCcccccccccc
Q 040184          385 IP-YWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFG-QIPGCLDNTSLHNNGDNDDSLVPAFNHNVRS  462 (699)
Q Consensus       385 ~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (699)
                      .+ ..+..+++|++|++++|++.+..+..+..+++|++|++++|++++ .+|..+..                       
T Consensus       415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-----------------------  471 (606)
T 3vq2_A          415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-----------------------  471 (606)
T ss_dssp             TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-----------------------
T ss_pred             cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc-----------------------
Confidence            77 688999999999999999998899999999999999999999987 36665544                       


Q ss_pred             cccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCC
Q 040184          463 TYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN  542 (699)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  542 (699)
                                                    +++|+.|++++|++++..|..|..+++|++|+|++|++++..|..|..++
T Consensus       472 ------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  521 (606)
T 3vq2_A          472 ------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY  521 (606)
T ss_dssp             ------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred             ------------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence                                          45999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeCCCCcccccCCcccccCC-CCCeeecccCcCcccCCC
Q 040184          543 QVESLDISYNNLNGKIPPQLVELN-ALAFFSVAHNNLSGKIPE  584 (699)
Q Consensus       543 ~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~~~  584 (699)
                      +|++|++++|+++ .+|..+..++ +|++|++++|++.|.++.
T Consensus       522 ~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          522 SLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             cCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999999999 6777788987 599999999999987774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4e-49  Score=439.61  Aligned_cols=519  Identities=19%  Similarity=0.185  Sum_probs=371.7

Q ss_pred             CcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEE
Q 040184            4 LRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESV   83 (699)
Q Consensus         4 L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L   83 (699)
                      .++++.++.+++ .+|. .+  .+++++|++++|.++ .++...|.++++|++|++++|.+....+..  +..+.+|++|
T Consensus         9 ~~~~~c~~~~l~-~ip~-~l--~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~--~~~l~~L~~L   81 (570)
T 2z63_A            9 NITYQCMELNFY-KIPD-NL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTL   81 (570)
T ss_dssp             TTEEECCSSCCS-SCCS-SS--CSSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTT--TTTCTTCCEE
T ss_pred             CcEEEeCCCCcc-ccCC-Cc--cccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCccc--ccCchhCCEE
Confidence            356788888887 7776 33  368999999999987 455567888888999988888876654333  3455578888


Q ss_pred             EccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCccc-CCCCCCCCCCCCEEEccCcc
Q 040184           84 ALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLYVSKNF  162 (699)
Q Consensus        84 ~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~  162 (699)
                      ++++|.+++..+.+|.++++|++|++++|.++ .++...+.++++|++|++++|.+.+. .|..+.++++|++|++++|+
T Consensus        82 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A           82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             eCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence            88888887777778888888888888888877 44443357788888888888877763 56777778888888888888


Q ss_pred             CCccCchhhhhcCCCC----cEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCC
Q 040184          163 FQGNIPLEIGVYFPRL----VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL  238 (699)
Q Consensus       163 i~~~~~~~~~~~~~~L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  238 (699)
                      +++..+..+.. +++|    ++|++++|.+.+..|..+... +|+.|++++|.............++.++...+....+.
T Consensus       161 l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~  238 (570)
T 2z63_A          161 IQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR  238 (570)
T ss_dssp             CCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECC
T ss_pred             cceecHHHccc-hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccccc
Confidence            77444443433 5566    778888888777766666655 67888887775443222233345666666655433221


Q ss_pred             ccCcccccCCCCCcEEEccCCcCCccCCccCcCCC--CCceEECCCC-cCcCcCchhhhccCCCcEEeccCCcccccCCc
Q 040184          239 GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCS--HLEGLYMSDN-NLYGNIPAWLGNLSSLYDIMMASNHLQGPIPL  315 (699)
Q Consensus       239 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  315 (699)
                      .        ..+++.          .....+..++  .++.++++++ .+.+..+..+..+++|+.|++++|.+. .+|.
T Consensus       239 ~--------~~~l~~----------~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~  299 (570)
T 2z63_A          239 N--------EGNLEK----------FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD  299 (570)
T ss_dssp             C--------CSSCEE----------CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCB
T ss_pred             C--------chhhhh----------cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhh
Confidence            1        111111          1111122222  2455566655 555566666777777777777777766 4566


Q ss_pred             cccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCc--ChhhhcCC
Q 040184          316 EFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI--PYWIERLT  393 (699)
Q Consensus       316 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--~~~~~~l~  393 (699)
                      .+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+.+..+.   ..+++|++|++++|.+++..  +..+..++
T Consensus       300 ~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  373 (570)
T 2z63_A          300 FSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTT  373 (570)
T ss_dssp             CCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCS
T ss_pred             hhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccC
Confidence            66666 7777777777776 3333 3566777777777776554432   56788888888888887654  67788888


Q ss_pred             CCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCC-CccccCCccCCCCCCCCCcccccccccccccCCCCccc
Q 040184          394 YLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIP-GCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTME  472 (699)
Q Consensus       394 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (699)
                      +|++|++++|++.+..+. +..+++|+.|++++|.+.+..| ..+.                                  
T Consensus       374 ~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------  418 (570)
T 2z63_A          374 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL----------------------------------  418 (570)
T ss_dssp             CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT----------------------------------
T ss_pred             ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh----------------------------------
Confidence            999999999888754444 8888899999999988876544 2222                                  


Q ss_pred             ccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCc-ccCCccccCCCCCCEEeCCC
Q 040184          473 KEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLT-GVIPVTFSNLNQVESLDISY  551 (699)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~  551 (699)
                                         .+++|+.|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++
T Consensus       419 -------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~  479 (570)
T 2z63_A          419 -------------------SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  479 (570)
T ss_dssp             -------------------TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             -------------------cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence                               2458888999999988888888888999999999999887 56788888899999999999


Q ss_pred             CcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCC
Q 040184          552 NNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAV  616 (699)
Q Consensus       552 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~  616 (699)
                      |++++..|..+..+++|++|++++|++++..|..+..+++++.+++++||+.|     +|+..|.
T Consensus       480 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----~~~~~~~  539 (570)
T 2z63_A          480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-----SCPRIDY  539 (570)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-----CTTTTHH
T ss_pred             CccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC-----CCcchHH
Confidence            99988888888889999999999999988888888888888999999999998     6765544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-47  Score=428.25  Aligned_cols=493  Identities=18%  Similarity=0.185  Sum_probs=367.0

Q ss_pred             CCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCcccc
Q 040184            2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLE   81 (699)
Q Consensus         2 ~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~   81 (699)
                      +++++|++++|.++ .++..+|..+++|++|++++|.++ .++...|.++++|++|++++|.+....+..  +..+.+|+
T Consensus        28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~  103 (570)
T 2z63_A           28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQ  103 (570)
T ss_dssp             SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCC
T ss_pred             ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhh--hcCccccc
Confidence            46899999999999 555448999999999999999998 566678999999999999999987765443  35566999


Q ss_pred             EEEccCCcCccccchhcCCCCCCCEEEcccCcccc-ccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCC----CEE
Q 040184           82 SVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKG-EFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHL----DTL  156 (699)
Q Consensus        82 ~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L----~~L  156 (699)
                      +|++++|.+++..+..++++++|++|++++|.+++ .+|..+ .++++|++|++++|.+.+..+..+..+++|    +.+
T Consensus       104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L  182 (570)
T 2z63_A          104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (570)
T ss_dssp             EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred             cccccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence            99999999988877789999999999999999985 467764 899999999999999998878888888888    899


Q ss_pred             EccCccCCccCchhhhhcCCCCcEEeCcCCcccc-cCCccccCCCCCCEEEccCCcCCC-----ccchHHhhcCC--CCc
Q 040184          157 YVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG-SIPSSIGDMNSLEALDLSHNQLTG-----EIPEHLAMSCF--NLE  228 (699)
Q Consensus       157 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~--~L~  228 (699)
                      ++++|.+++ ++...+... +|+.|++++|.... ..+..+..++.++.+.+....+..     .++...+..+.  .++
T Consensus       183 ~l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~  260 (570)
T 2z63_A          183 DLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE  260 (570)
T ss_dssp             ECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred             ccCCCCcee-cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence            999999984 444555534 89999999985432 455667788888877665432220     22222222222  234


Q ss_pred             EEEccCC-cCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCC
Q 040184          229 FLVLSEN-SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASN  307 (699)
Q Consensus       229 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  307 (699)
                      .++++++ .+.+..+..+..+++|++|++++|.++ .+|..+..+ +|+.|++++|.+. .+|.                
T Consensus       261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~----------------  321 (570)
T 2z63_A          261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT----------------  321 (570)
T ss_dssp             EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB----------------
T ss_pred             hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc----------------
Confidence            4444444 333444444555555555555555554 344444444 5555555555544 2222                


Q ss_pred             cccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCC-cccccCCCCccEEECCCCCCCCCcC
Q 040184          308 HLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLR-YGTFFNRSSIVTLDLSYNSFSGYIP  386 (699)
Q Consensus       308 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~  386 (699)
                                ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+.+... ...+..+++|++|++++|.+.+..+
T Consensus       322 ----------~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  390 (570)
T 2z63_A          322 ----------LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS  390 (570)
T ss_dssp             ----------CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE
T ss_pred             ----------ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc
Confidence                      2344455555555544433322 344555555555555543220 1236778899999999998886555


Q ss_pred             hhhhcCCCCCEEEcccCcCCCCCC-cccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccccccccccc
Q 040184          387 YWIERLTYLRYLILANNNLEGEVP-IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYS  465 (699)
Q Consensus       387 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (699)
                      . +..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+..                          
T Consensus       391 ~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------  443 (570)
T 2z63_A          391 N-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------------------------  443 (570)
T ss_dssp             E-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------
T ss_pred             c-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc--------------------------
Confidence            5 8889999999999999886655 56888999999999999998777766544                          


Q ss_pred             CCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccC-ccCCccccccCccCeEEccCCcCcccCCccccCCCCC
Q 040184          466 AGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT-GEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV  544 (699)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  544 (699)
                                                 +++|+.|++++|.++ +.+|..+..+++|++|++++|++++..|..|..+++|
T Consensus       444 ---------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  496 (570)
T 2z63_A          444 ---------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  496 (570)
T ss_dssp             ---------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ---------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence                                       358999999999997 5688899999999999999999999989999999999


Q ss_pred             CEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCC
Q 040184          545 ESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEW  585 (699)
Q Consensus       545 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~  585 (699)
                      ++|++++|++++..|..+..+++|+.|++++|+++|.+|..
T Consensus       497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            99999999999888888999999999999999999998863

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.3e-47  Score=419.63  Aligned_cols=391  Identities=18%  Similarity=0.162  Sum_probs=218.0

Q ss_pred             cEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEE
Q 040184            5 RVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVA   84 (699)
Q Consensus         5 ~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~   84 (699)
                      .+.+.+++.++ .+|. .+.  ++|++|++++|.+++ ++...|.+++                          +|++|+
T Consensus         8 ~~c~~~~~~l~-~ip~-~~~--~~L~~L~Ls~n~l~~-~~~~~~~~l~--------------------------~L~~L~   56 (549)
T 2z81_A            8 GVCDGRSRSFT-SIPS-GLT--AAMKSLDLSFNKITY-IGHGDLRACA--------------------------NLQVLI   56 (549)
T ss_dssp             SEEECTTSCCS-SCCS-CCC--TTCCEEECCSSCCCE-ECSSTTSSCT--------------------------TCCEEE
T ss_pred             ceEECCCCccc-cccc-cCC--CCccEEECcCCccCc-cChhhhhcCC--------------------------cccEEE
Confidence            34555666665 5555 222  566666666666652 3323444444                          455555


Q ss_pred             ccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCccc-CCCCCCCCCCCCEEEccCccC
Q 040184           85 LSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLYVSKNFF  163 (699)
Q Consensus        85 ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~i  163 (699)
                      +++|.+++..|.+|.++++|++|++++|.+++ ++...+.++++|++|++++|.+.+. .+..+..+++|++|++++|.+
T Consensus        57 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~  135 (549)
T 2z81_A           57 LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET  135 (549)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred             CCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcc
Confidence            55555555556667777777777777777774 3333346777777777777777653 455677777888888877774


Q ss_pred             CccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccC--
Q 040184          164 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQL--  241 (699)
Q Consensus       164 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--  241 (699)
                      .+.+|...+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|...+..+++|++|++++|.+.+..  
T Consensus       136 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  214 (549)
T 2z81_A          136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS  214 (549)
T ss_dssp             CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCC
T ss_pred             ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccccc
Confidence            44666544455778888888888888777888888888888888888776 677766666788888888888776532  


Q ss_pred             -cccccCCCCCcEEEccCCcCCccCC----ccCcCCCCCceEECCCCcCcCcC------chhhhccCCCcEEeccCCccc
Q 040184          242 -FSKKNYLRKLVSLHLDANYFTGEIP----KSLSNCSHLEGLYMSDNNLYGNI------PAWLGNLSSLYDIMMASNHLQ  310 (699)
Q Consensus       242 -~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~~~  310 (699)
                       ......+++|+.|++++|.+++..+    ..+..+++|+.+++++|.+.+..      ...+..+++|+.|.+.++.+.
T Consensus       215 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  294 (549)
T 2z81_A          215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP  294 (549)
T ss_dssp             CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCS
T ss_pred             ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccc
Confidence             1222345667777777776654322    23345566666666666654321      112233445555555554433


Q ss_pred             cc-----CCccccCCCCCcEEEcccccCcccCCCCC--CCCCccEEEccCccccccCC--cccccCCCCccEEECCCCCC
Q 040184          311 GP-----IPLEFCQLNYLQILDLSENNISGSLPSCS--SHSSITQVHLSKNMLYGPLR--YGTFFNRSSIVTLDLSYNSF  381 (699)
Q Consensus       311 ~~-----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~--~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~L~Ls~n~i  381 (699)
                      ..     .+..+...++|+.|++++|.+. .+|...  .+++|+.|++++|.+.+..+  ...+..+++|++|++++|++
T Consensus       295 ~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l  373 (549)
T 2z81_A          295 QFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL  373 (549)
T ss_dssp             CGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC
T ss_pred             hhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc
Confidence            11     0111122234455555555443 222111  23444444444444433221  11133444555555555555


Q ss_pred             CCCcC--hhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCccc
Q 040184          382 SGYIP--YWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIF  430 (699)
Q Consensus       382 ~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~  430 (699)
                      ++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++
T Consensus       374 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~  423 (549)
T 2z81_A          374 RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR  423 (549)
T ss_dssp             CCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred             cccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence            43321  23444555555555555554 34444444555555555555543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.8e-46  Score=422.46  Aligned_cols=539  Identities=18%  Similarity=0.158  Sum_probs=424.0

Q ss_pred             EEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEc
Q 040184            6 VLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVAL   85 (699)
Q Consensus         6 ~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l   85 (699)
                      +.+-++.+++ .+|. .+  -+++++|||++|+|+ .++..+|.++++|++|+|++|.+....+..  +..+.+|++|+|
T Consensus        35 ~~~c~~~~l~-~vP~-~l--p~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~--f~~L~~L~~L~L  107 (635)
T 4g8a_A           35 TYQCMELNFY-KIPD-NL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLIL  107 (635)
T ss_dssp             EEECTTSCCS-SCCS-SS--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCCEEEC
T ss_pred             EEECCCCCcC-ccCC-CC--CcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhH--hcCCCCCCEEEc
Confidence            4566777787 7776 23  258999999999998 677778999999999999999987765443  356668999999


Q ss_pred             cCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCccc-CCCCCCCCCCCCEEEccCccCC
Q 040184           86 SGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLYVSKNFFQ  164 (699)
Q Consensus        86 s~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~  164 (699)
                      ++|++++..+.+|.++++|++|++++|.++ .++...|.++++|++|++++|.+.+. .|..+..+++|++|++++|+++
T Consensus       108 s~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          108 TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             TTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            999998888889999999999999999998 56665578999999999999998764 5667888999999999999998


Q ss_pred             ccCchhhhhcCC----CCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcC---
Q 040184          165 GNIPLEIGVYFP----RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL---  237 (699)
Q Consensus       165 ~~~~~~~~~~~~----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l---  237 (699)
                      +..+..+.. ++    ....++++.|.+....+..+ ....++.+++.+|.....++...+..+..++...+..+..   
T Consensus       187 ~~~~~~l~~-L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~  264 (635)
T 4g8a_A          187 SIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE  264 (635)
T ss_dssp             EECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred             ccccccccc-hhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccc
Confidence            555544432 33    34578899999886555544 4456778899888776566666667788888777654332   


Q ss_pred             ---CccCcccccCCCCCcEEEccCCcCCc---cCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccc
Q 040184          238 ---LGQLFSKKNYLRKLVSLHLDANYFTG---EIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG  311 (699)
Q Consensus       238 ---~~~~~~~~~~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  311 (699)
                         .......+.....+...++..+....   .....+..+.+++.+.+.++.+...  ..+....+++.|++.+|.+..
T Consensus       265 ~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~  342 (635)
T 4g8a_A          265 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQ  342 (635)
T ss_dssp             CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESS
T ss_pred             cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccC
Confidence               22233444555666666665443321   2334566678899999988887643  235667889999999998875


Q ss_pred             cCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCcccccc--CCcccccCCCCccEEECCCCCCCCCcChhh
Q 040184          312 PIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGP--LRYGTFFNRSSIVTLDLSYNSFSGYIPYWI  389 (699)
Q Consensus       312 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~  389 (699)
                      ..+   ..++.|+.+++..|.+.. .+....+++|+.+++++|.+...  .+. .+..+.+|+.+++..+.+.. .+..+
T Consensus       343 ~~~---~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~~~~~~~~~-~~~~~  416 (635)
T 4g8a_A          343 FPT---LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTISLKYLDLSFNGVIT-MSSNF  416 (635)
T ss_dssp             CCC---CBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCH-HHHSCSCCCEEECCSCSEEE-ECSCC
T ss_pred             cCc---ccchhhhhcccccccCCC-Ccccccccccccchhhcccccccccccc-chhhhhhhhhhhcccccccc-ccccc
Confidence            544   346788899999888763 34445788999999999987532  232 25678899999999988764 45567


Q ss_pred             hcCCCCCEEEcccCcCCCCC-CcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCC
Q 040184          390 ERLTYLRYLILANNNLEGEV-PIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGS  468 (699)
Q Consensus       390 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (699)
                      ..+++|+.++++.++..... ...+..+++++.+++++|.+.+..+..+..                             
T Consensus       417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-----------------------------  467 (635)
T 4g8a_A          417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----------------------------  467 (635)
T ss_dssp             TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----------------------------
T ss_pred             cccccccchhhhhcccccccccccccccccccccccccccccccccccccc-----------------------------
Confidence            78999999999998876544 456788999999999999998777665543                             


Q ss_pred             CcccccceeEEeecceeeeeCCCCCCcccEEEccCCcc-CccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEE
Q 040184          469 STMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKL-TGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESL  547 (699)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  547 (699)
                                              ++.++.|++++|.+ .+..|..|..+++|++|+|++|++++.+|..|+++++|++|
T Consensus       468 ------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L  523 (635)
T 4g8a_A          468 ------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  523 (635)
T ss_dssp             ------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ------------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence                                    35899999999985 44678889999999999999999999999999999999999


Q ss_pred             eCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCC-CCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184          548 DISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQF-TTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS  620 (699)
Q Consensus       548 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~  620 (699)
                      +|++|+|++..|..|..+++|++|++++|++++..|+.+..+ ++++.+++++|||.|     +|+..|+..|.
T Consensus       524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C-----~C~~~~~~~wl  592 (635)
T 4g8a_A          524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC-----TCEHQSFLQWI  592 (635)
T ss_dssp             ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC-----SGGGHHHHHHH
T ss_pred             ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc-----cCCcHHHHHHH
Confidence            999999999889999999999999999999999999998877 689999999999999     99988887775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4e-47  Score=425.64  Aligned_cols=288  Identities=21%  Similarity=0.213  Sum_probs=153.4

Q ss_pred             CccccccchhhhhCCCCCCEEEcCCCcCccc-----------------CCCCCC--CCCCCCEEEccCccCCccCchhhh
Q 040184          112 SNLKGEFLNWLLENNTNLNTLVLRNNSLSGP-----------------FRMPIQ--PHWHLDTLYVSKNFFQGNIPLEIG  172 (699)
Q Consensus       112 n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----------------~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~  172 (699)
                      |.+++ +|..+ .++++|++|+|++|.+++.                 +|..+.  ++++|++|++++|++.+.+|..+.
T Consensus       193 n~l~~-ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          193 NNITF-VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             CEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             CCCcc-CCHHH-hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            34443 44442 4555555555555555543                 455555  555555555555555555554444


Q ss_pred             hcCCCCcEEeCcCCc-ccc-cCCccccCC------CCCCEEEccCCcCCCccch-HHhhcCCCCcEEEccCCcCCccCcc
Q 040184          173 VYFPRLVYLNLSRND-FNG-SIPSSIGDM------NSLEALDLSHNQLTGEIPE-HLAMSCFNLEFLVLSENSLLGQLFS  243 (699)
Q Consensus       173 ~~~~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~  243 (699)
                      . +++|++|++++|+ +++ .+|..++.+      ++|++|++++|.++ .+|. ..+..+++|++|++++|.+.+.+| 
T Consensus       271 ~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          271 A-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             T-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             c-CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            3 4555555555555 554 455544443      55555666555555 5554 122345556666666665555555 


Q ss_pred             cccCCCCCcEEEccCCcCCccCCccCcCCCC-CceEECCCCcCcCcCchhhhccC--CCcEEeccCCcccccCCcccc--
Q 040184          244 KKNYLRKLVSLHLDANYFTGEIPKSLSNCSH-LEGLYMSDNNLYGNIPAWLGNLS--SLYDIMMASNHLQGPIPLEFC--  318 (699)
Q Consensus       244 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~--  318 (699)
                      .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|+++ .+|..+...+  +|+.|++++|.+.+..|..+.  
T Consensus       348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~  425 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL  425 (636)
T ss_dssp             CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred             hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence            5555566666666666665 45555666666 666666666665 4455444433  566666666666665555555  


Q ss_pred             -----CCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhc--
Q 040184          319 -----QLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIER--  391 (699)
Q Consensus       319 -----~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~--  391 (699)
                           .+++|+.|++++|.+.+ +|                       ...+..+++|++|++++|+++...+..+..  
T Consensus       426 ~~~~~~~~~L~~L~Ls~N~l~~-lp-----------------------~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~  481 (636)
T 4eco_A          426 DPTPFKGINVSSINLSNNQISK-FP-----------------------KELFSTGSPLSSINLMGNMLTEIPKNSLKDEN  481 (636)
T ss_dssp             CSSCCCCCCEEEEECCSSCCCS-CC-----------------------THHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred             ccccccCCCCCEEECcCCccCc-CC-----------------------HHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence                 55566666666666552 11                       111233444444444444444222222222  


Q ss_pred             -----CCCCCEEEcccCcCCCCCCcccC--CCCCCCEEECcCCcccc
Q 040184          392 -----LTYLRYLILANNNLEGEVPIQLC--RLKQLRLIDLSNNNIFG  431 (699)
Q Consensus       392 -----l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~ls~n~i~~  431 (699)
                           +++|++|++++|+++ .+|..+.  .+++|+.|++++|++++
T Consensus       482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~  527 (636)
T 4eco_A          482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK  527 (636)
T ss_dssp             EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred             ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC
Confidence                 226666666666666 4555554  56666666666666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.3e-46  Score=412.19  Aligned_cols=462  Identities=19%  Similarity=0.161  Sum_probs=374.5

Q ss_pred             cccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEc
Q 040184           79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYV  158 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  158 (699)
                      +|++|++++|.+++..|..|.++++|++|++++|.+++..|.. |.++++|++|++++|.+.+..+..++.+++|++|++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA-FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh-ccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            6888999999988888889999999999999999999544444 589999999999999999887777999999999999


Q ss_pred             cCccCCc-cCchhhhhcCCCCcEEeCcCCc-ccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCc
Q 040184          159 SKNFFQG-NIPLEIGVYFPRLVYLNLSRND-FNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS  236 (699)
Q Consensus       159 ~~n~i~~-~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  236 (699)
                      ++|++++ ..|..+ ..+++|++|++++|. +....+..+..+++|++|++++|.+++.+|..+ ..+++|++|++++|.
T Consensus       106 s~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          106 MGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLSE  183 (549)
T ss_dssp             TTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECSB
T ss_pred             CCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh-hccccCceEecccCc
Confidence            9999985 234444 448899999999998 554445789999999999999999996667665 479999999999998


Q ss_pred             CCccCcccccCCCCCcEEEccCCcCCccC--C-ccCcCCCCCceEECCCCcCcCcCch----hhhccCCCcEEeccCCcc
Q 040184          237 LLGQLFSKKNYLRKLVSLHLDANYFTGEI--P-KSLSNCSHLEGLYMSDNNLYGNIPA----WLGNLSSLYDIMMASNHL  309 (699)
Q Consensus       237 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~-~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~  309 (699)
                      +.......+..+++|++|++++|.+++..  + .....+++|+.|++++|.+.+..+.    .+..+++|+.+++++|.+
T Consensus       184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~  263 (549)
T 2z81_A          184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL  263 (549)
T ss_dssp             STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred             ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence            86444344467899999999999998642  1 2334578999999999988765443    345678999999999988


Q ss_pred             cccC------CccccCCCCCcEEEcccccCcccCCC--C----CCCCCccEEEccCccccccCCcccccCCCCccEEECC
Q 040184          310 QGPI------PLEFCQLNYLQILDLSENNISGSLPS--C----SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLS  377 (699)
Q Consensus       310 ~~~~------~~~~~~l~~L~~L~l~~n~i~~~~~~--~----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls  377 (699)
                      .+..      ...+..+++|+.+++.++.+......  .    ....+|+.+++++|.+. .++...+..+++|++|+++
T Consensus       264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred             cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence            7532      23356788999999999887642110  0    02468999999999985 5666645689999999999


Q ss_pred             CCCCCCCcCh---hhhcCCCCCEEEcccCcCCCCCC--cccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCC
Q 040184          378 YNSFSGYIPY---WIERLTYLRYLILANNNLEGEVP--IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSL  452 (699)
Q Consensus       378 ~n~i~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~  452 (699)
                      +|++++..+.   .+..+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..             
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------------  408 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW-------------  408 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC-------------
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc-------------
Confidence            9999876543   36788999999999999985432  45888999999999999997 45544332             


Q ss_pred             cccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcc
Q 040184          453 VPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTG  532 (699)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  532 (699)
                                                              +++|+.|++++|++++ +|..+  .++|++|+|++|++++
T Consensus       409 ----------------------------------------~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~  445 (549)
T 2z81_A          409 ----------------------------------------PEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDS  445 (549)
T ss_dssp             ----------------------------------------CTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSC
T ss_pred             ----------------------------------------cccccEEECCCCCccc-ccchh--cCCceEEECCCCChhh
Confidence                                                    4589999999999984 44433  3689999999999996


Q ss_pred             cCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCC
Q 040184          533 VIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD  612 (699)
Q Consensus       533 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~  612 (699)
                      .+    ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++..|..+..++.++.+++++||+.|     +|.
T Consensus       446 ~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----~~~  514 (549)
T 2z81_A          446 FS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-----SCP  514 (549)
T ss_dssp             CC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC-----CHH
T ss_pred             hc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC-----CCc
Confidence            53    57899999999999999 6665 4679999999999999999999888899999999999999999     675

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=9.1e-47  Score=422.79  Aligned_cols=437  Identities=17%  Similarity=0.233  Sum_probs=251.8

Q ss_pred             cccEEEccCCcCccccchhcCCCCCCCEEEcccCcc------cc------ccchhhhhCCCCCCEEEcCCCcCcccCCCC
Q 040184           79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNL------KG------EFLNWLLENNTNLNTLVLRNNSLSGPFRMP  146 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~------~~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~  146 (699)
                      +++.|+|+++.+.+.+|..++++++|++|++++|.+      .+      .+|...   +..|+ ++++.+.+.+..+..
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence            688999999999888888999999999999998865      12      233222   12233 333333333322222


Q ss_pred             CCC-------------------CCCCCEEEcc--CccCCccCchhhhhcCCCCcEEeCcCCccccc--------------
Q 040184          147 IQP-------------------HWHLDTLYVS--KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS--------------  191 (699)
Q Consensus       147 ~~~-------------------l~~L~~L~l~--~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~--------------  191 (699)
                      +..                   ...++.+.+.  .|++++ +|..+.. +++|++|+|++|.+++.              
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchh
Confidence            210                   0111111111  344554 5555444 45566666666555543              


Q ss_pred             ---CCcccc--CCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCc-CCc-cCcccccCC------CCCcEEEccC
Q 040184          192 ---IPSSIG--DMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS-LLG-QLFSKKNYL------RKLVSLHLDA  258 (699)
Q Consensus       192 ---~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~  258 (699)
                         +|..++  ++++|++|++++|.+.+.+|..+. ++++|++|++++|. +.+ .+|..+..+      ++|++|++++
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence               555555  566666666666655555554442 45566666666665 554 455544443      5666666666


Q ss_pred             CcCCccCCc--cCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCC-CcEEEcccccCcc
Q 040184          259 NYFTGEIPK--SLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNY-LQILDLSENNISG  335 (699)
Q Consensus       259 n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~i~~  335 (699)
                      |.++ .+|.  .++.+++|+.|++++|++++.+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. 
T Consensus       315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-  390 (636)
T 4eco_A          315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-  390 (636)
T ss_dssp             SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred             CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence            6666 4555  56666666666666666665555 5556666666666666665 45555666666 666666666665 


Q ss_pred             cCCCCC-C--CCCccEEEccCccccccCCccccc-------CCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcC
Q 040184          336 SLPSCS-S--HSSITQVHLSKNMLYGPLRYGTFF-------NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL  405 (699)
Q Consensus       336 ~~~~~~-~--~~~L~~L~l~~n~~~~~~~~~~~~-------~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  405 (699)
                      .+|..+ .  +++|+.|++++|.+.+..+.. +.       .+++|++|++++|+++...+..+..+++|++|++++|++
T Consensus       391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l  469 (636)
T 4eco_A          391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML  469 (636)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred             ccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence            334333 1  225555666655555444433 33       455677777777777755455555677777777777777


Q ss_pred             CCCCCcccCCC-------CCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeE
Q 040184          406 EGEVPIQLCRL-------KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIM  478 (699)
Q Consensus       406 ~~~~~~~~~~l-------~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (699)
                      +...+..+...       ++|+.|++++|+++ .+|..+..                                       
T Consensus       470 ~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------------------------------  509 (636)
T 4eco_A          470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA---------------------------------------  509 (636)
T ss_dssp             SBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST---------------------------------------
T ss_pred             CCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh---------------------------------------
Confidence            63322233222       26777777777766 44433320                                       


Q ss_pred             EeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEc------cCCcCcccCCccccCCCCCCEEeCCCC
Q 040184          479 FTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNL------SHNNLTGVIPVTFSNLNQVESLDISYN  552 (699)
Q Consensus       479 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N  552 (699)
                                  ..+++|+.|++++|++++ +|..+..+++|++|+|      ++|++.+.+|..+..+++|++|+|++|
T Consensus       510 ------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          510 ------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN  576 (636)
T ss_dssp             ------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             ------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence                        013466677777777765 6666666777777777      345566666666666777777777777


Q ss_pred             cccccCCcccccCCCCCeeecccCcCcccCC
Q 040184          553 NLNGKIPPQLVELNALAFFSVAHNNLSGKIP  583 (699)
Q Consensus       553 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~  583 (699)
                      ++. .+|..+.  ++|+.|++++|++.+...
T Consensus       577 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          577 DIR-KVNEKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             CCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred             cCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence            773 5555544  567777777776665443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.2e-46  Score=412.10  Aligned_cols=463  Identities=19%  Similarity=0.200  Sum_probs=246.6

Q ss_pred             cEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEc
Q 040184           55 KVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVL  134 (699)
Q Consensus        55 ~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~L  134 (699)
                      ++|++++|.++..+...    + .+|++|++++|.+++..|..|.++++|++|++++|.+++..|.. |.++++|++|++
T Consensus         3 ~~l~ls~n~l~~ip~~~----~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L   76 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDL----S-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV-FKFNQELEYLDL   76 (520)
T ss_dssp             CEEECTTSCCSSCCCSC----C-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG-GTTCTTCCEEEC
T ss_pred             ceEecCCCCcccccccc----c-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH-hhcccCCCEEec
Confidence            35666666665433211    1 35666666666666666666666666666666666666433433 356666666666


Q ss_pred             CCCcCcccCCCCCCCCCCCCEEEccCccCCc-cCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCC--CEEEccCCc
Q 040184          135 RNNSLSGPFRMPIQPHWHLDTLYVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSL--EALDLSHNQ  211 (699)
Q Consensus       135 s~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~L~~n~  211 (699)
                      ++|++... |..  .+++|++|++++|++++ .+|..+.. +++|++|++++|.+.+   ..+..+++|  +.|++++|.
T Consensus        77 s~N~l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           77 SHNKLVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGN-MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             CSSCCCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGG-CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred             CCCceeec-Ccc--ccCCccEEeccCCccccccchhhhcc-CCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence            66666542 222  45566666666666553 23344433 4555556555555543   234444444  555555555


Q ss_pred             C--CCccchHHhhcCC-CCcEEEccCCcCCccCc-ccccCCCCCcEEEccCCc-------CCccCCccCcCCCCCceEEC
Q 040184          212 L--TGEIPEHLAMSCF-NLEFLVLSENSLLGQLF-SKKNYLRKLVSLHLDANY-------FTGEIPKSLSNCSHLEGLYM  280 (699)
Q Consensus       212 l--~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~l~~L~~L~l  280 (699)
                      +  .+..|..+. .+. +...+++++|.+.+..+ ..+..+++|+.+++++|.       +.+..+ .+..+++|+.|++
T Consensus       150 l~~~~~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l  227 (520)
T 2z7x_B          150 TYGEKEDPEGLQ-DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTL  227 (520)
T ss_dssp             TTTSSCCTTTTT-TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEE
T ss_pred             cccccccccccc-ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccc
Confidence            5  333333221 111 12234444444433222 233445555555555543       332222 3444555555555


Q ss_pred             CCCcCcCcCchhhh---ccCCCcEEeccCCcccccCCccc-----cCCCCCcEEEcccccCcccCCCCCCCCCccEEEcc
Q 040184          281 SDNNLYGNIPAWLG---NLSSLYDIMMASNHLQGPIPLEF-----CQLNYLQILDLSENNISGSLPSCSSHSSITQVHLS  352 (699)
Q Consensus       281 ~~n~l~~~~~~~~~---~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~  352 (699)
                      ++|.+.+..+..+.   ..++|+.|++++|.+.+.+|..+     ..+++|+.+++++|                     
T Consensus       228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n---------------------  286 (520)
T 2z7x_B          228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD---------------------  286 (520)
T ss_dssp             EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC---------------------
T ss_pred             cccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccc---------------------
Confidence            55444322111110   12345555555555544444444     44444444444444                     


Q ss_pred             CccccccCCcccccCC---CCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcc
Q 040184          353 KNMLYGPLRYGTFFNR---SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI  429 (699)
Q Consensus       353 ~n~~~~~~~~~~~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i  429 (699)
                        .+  .++...+..+   .+|+.|++++|.+.....  ...+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus       287 --~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  360 (520)
T 2z7x_B          287 --VF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL  360 (520)
T ss_dssp             --CC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC
T ss_pred             --ce--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc
Confidence              44  2221112221   446666666666543221  13556666666666666655666666666666666666666


Q ss_pred             cc--cCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccC
Q 040184          430 FG--QIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT  507 (699)
Q Consensus       430 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  507 (699)
                      ++  .+|..+..                                                     +++|+.|++++|.++
T Consensus       361 ~~l~~~~~~~~~-----------------------------------------------------l~~L~~L~Ls~N~l~  387 (520)
T 2z7x_B          361 KELSKIAEMTTQ-----------------------------------------------------MKSLQQLDISQNSVS  387 (520)
T ss_dssp             CBHHHHHHHHTT-----------------------------------------------------CTTCCEEECCSSCCB
T ss_pred             CccccchHHHhh-----------------------------------------------------CCCCCEEECCCCcCC
Confidence            53  22222221                                                     346666666666666


Q ss_pred             ccCCc-cccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCC
Q 040184          508 GEIPP-QISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWT  586 (699)
Q Consensus       508 ~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~  586 (699)
                      +.+|. .+..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+
T Consensus       388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~  464 (520)
T 2z7x_B          388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIF  464 (520)
T ss_dssp             CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHh
Confidence            53443 366677777777777777666555543  56777777777777 566666677777777777777774333336


Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCCCCCCCC-CCCC
Q 040184          587 AQFTTFKEDSYEGNPLLCGKPLPDCDVAAV-PEAS  620 (699)
Q Consensus       587 ~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~-~~~~  620 (699)
                      ..+++++.+++++||+.|     +|+..|+ ..|.
T Consensus       465 ~~l~~L~~L~l~~N~~~c-----~c~~~~~~~~~~  494 (520)
T 2z7x_B          465 DRLTSLQKIWLHTNPWDC-----SCPRIDYLSRWL  494 (520)
T ss_dssp             TTCTTCCEEECCSSCBCC-----CHHHHHHHHHHH
T ss_pred             ccCCcccEEECcCCCCcc-----cCCchHHHHHHH
Confidence            666777777777777777     6665555 4443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.7e-46  Score=408.80  Aligned_cols=454  Identities=20%  Similarity=0.188  Sum_probs=278.3

Q ss_pred             cEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEE
Q 040184            5 RVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVA   84 (699)
Q Consensus         5 ~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~   84 (699)
                      ++||+++|+++ .+|. .+.  ++|++|++++|.++ .++...|.++++|++|++++|.+..                  
T Consensus         3 ~~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~------------------   59 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPK-DLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQY------------------   59 (520)
T ss_dssp             CEEECTTSCCS-SCCC-SCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCE------------------
T ss_pred             ceEecCCCCcc-cccc-ccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCC------------------
Confidence            57889999888 7776 344  88899999998887 4555667777777777666665543                  


Q ss_pred             ccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcc-cCCCCCCCCCCCCEEEccCccC
Q 040184           85 LSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSG-PFRMPIQPHWHLDTLYVSKNFF  163 (699)
Q Consensus        85 ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~i  163 (699)
                              ..|..|.++++|++|++++|.++ .+|..   .+++|++|++++|.+.+ ..|..++.+++|++|++++|++
T Consensus        60 --------~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           60 --------LDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             --------EEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred             --------cChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence                    34444555555555555555555 34432   45555555555555554 2344555555555555555555


Q ss_pred             CccCchhhhhcCCCC--cEEeCcCCcc--cccCCccccCCC-CCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCc--
Q 040184          164 QGNIPLEIGVYFPRL--VYLNLSRNDF--NGSIPSSIGDMN-SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS--  236 (699)
Q Consensus       164 ~~~~~~~~~~~~~~L--~~L~L~~n~i--~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~--  236 (699)
                      ++.   . +..+++|  ++|++++|.+  .+..|..+..+. ....+++++|.+.+.++...+..+++|+.+++++|.  
T Consensus       128 ~~~---~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  203 (520)
T 2z7x_B          128 EKS---S-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED  203 (520)
T ss_dssp             CGG---G-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST
T ss_pred             chh---h-ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccc
Confidence            431   1 1223444  6666666665  445555554443 122445566665555555555556666666666664  


Q ss_pred             -----CCccCcccccCCCCCcEEEccCCcCCccCCccC---cCCCCCceEECCCCcCcCcCchhh-----hccCCCcEEe
Q 040184          237 -----LLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSL---SNCSHLEGLYMSDNNLYGNIPAWL-----GNLSSLYDIM  303 (699)
Q Consensus       237 -----l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~  303 (699)
                           +.+.++ .+..+++|+.|++++|.+.+..+..+   ...++|+.|++++|++.+.+|..+     ..+++|+.++
T Consensus       204 ~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~  282 (520)
T 2z7x_B          204 NKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ  282 (520)
T ss_dssp             TTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEE
T ss_pred             cccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecc
Confidence                 333333 55666677777776666553221111   013467777777777776666666     6777777777


Q ss_pred             ccCCcccccCC-ccccCC---CCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCC
Q 040184          304 MASNHLQGPIP-LEFCQL---NYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYN  379 (699)
Q Consensus       304 l~~n~~~~~~~-~~~~~l---~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n  379 (699)
                      +++|.+  .+| ..+..+   ++|+.|++++|.+.... .                         +..+++|++|++++|
T Consensus       283 l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~-------------------------~~~l~~L~~L~Ls~n  334 (520)
T 2z7x_B          283 VVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-C-------------------------PSKISPFLHLDFSNN  334 (520)
T ss_dssp             EEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-C-------------------------CSSCCCCCEEECCSS
T ss_pred             ccccce--ecchhhhhcccccCceeEEEcCCCcccccc-c-------------------------hhhCCcccEEEeECC
Confidence            777776  333 333333   56777777777664211 0                         134455666666666


Q ss_pred             CCCCCcChhhhcCCCCCEEEcccCcCCC--CCCcccCCCCCCCEEECcCCcccccCCCc-cccCCccCCCCCCCCCcccc
Q 040184          380 SFSGYIPYWIERLTYLRYLILANNNLEG--EVPIQLCRLKQLRLIDLSNNNIFGQIPGC-LDNTSLHNNGDNDDSLVPAF  456 (699)
Q Consensus       380 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~  456 (699)
                      ++++..|..+..+++|++|++++|++++  ..|..+..+++|++|++++|++++.+|.. +.                  
T Consensus       335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~------------------  396 (520)
T 2z7x_B          335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS------------------  396 (520)
T ss_dssp             CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC------------------
T ss_pred             ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc------------------
Confidence            6665555666666666666666666664  33455666666667777666666533321 11                  


Q ss_pred             cccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCc
Q 040184          457 NHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPV  536 (699)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  536 (699)
                                                         .+++|+.|++++|++++..|..+.  ++|++|++++|+++ .+|.
T Consensus       397 -----------------------------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~  438 (520)
T 2z7x_B          397 -----------------------------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPK  438 (520)
T ss_dssp             -----------------------------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCG
T ss_pred             -----------------------------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccch
Confidence                                               134667777777777665555543  67888888888888 6666


Q ss_pred             cccCCCCCCEEeCCCCcccccCCc-ccccCCCCCeeecccCcCcccCC
Q 040184          537 TFSNLNQVESLDISYNNLNGKIPP-QLVELNALAFFSVAHNNLSGKIP  583 (699)
Q Consensus       537 ~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~l~~N~l~~~~~  583 (699)
                      .+..+++|++|++++|+++. +|. .+..+++|++|++++|+++|.++
T Consensus       439 ~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          439 QVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            66788888888888888884 444 47888888888888888887665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.2e-45  Score=417.44  Aligned_cols=461  Identities=18%  Similarity=0.228  Sum_probs=280.4

Q ss_pred             cccEEEccCCcCccccchhcCCCCCCCEEEc-ccCccccccchhhhhCCCCCCE-----EE---------c-CCCcCc--
Q 040184           79 QLESVALSGSGIHATFPKFLYNQHDLEYVDF-SDSNLKGEFLNWLLENNTNLNT-----LV---------L-RNNSLS--  140 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~l-s~n~~~~~~~~~~~~~l~~L~~-----L~---------L-s~n~i~--  140 (699)
                      +++.|+|+++++.+.+|..++++++|++|+| ++|.+.|..|.........+..     +.         . ....+.  
T Consensus       324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l  403 (876)
T 4ecn_A          324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL  403 (876)
T ss_dssp             CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred             CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence            6889999999999888989999999999999 7777665422110000000000     00         0 000000  


Q ss_pred             ---------ccCCCCCCCCCCCCEEEccC--ccCCccCchhhhhcCCCCcEEeCcCCcccc-----------------cC
Q 040184          141 ---------GPFRMPIQPHWHLDTLYVSK--NFFQGNIPLEIGVYFPRLVYLNLSRNDFNG-----------------SI  192 (699)
Q Consensus       141 ---------~~~~~~~~~l~~L~~L~l~~--n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-----------------~~  192 (699)
                               ...+........++.+.+..  |++++ +|..+.. +++|++|+|++|.+++                 .+
T Consensus       404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                     00000001111122222221  33443 4444333 4444444444444443                 24


Q ss_pred             Ccccc--CCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCc-CCc-cCcccccC-------CCCCcEEEccCCcC
Q 040184          193 PSSIG--DMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS-LLG-QLFSKKNY-------LRKLVSLHLDANYF  261 (699)
Q Consensus       193 ~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~-------l~~L~~L~L~~n~i  261 (699)
                      |..++  ++++|++|++++|.+.+.+|..+ ..+++|++|++++|. +.+ .+|..+..       +++|++|++++|.+
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            44444  55555555555555544555433 245555555555554 444 34433322       23556666666555


Q ss_pred             CccCCc--cCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCC-CcEEEcccccCcccCC
Q 040184          262 TGEIPK--SLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNY-LQILDLSENNISGSLP  338 (699)
Q Consensus       262 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~i~~~~~  338 (699)
                      + .+|.  .+..+++|+.|++++|+++ .+| .|+.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp  635 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP  635 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence            5 4454  5555556666666665555 444 5555555666666666555 45555555555 666666666655 333


Q ss_pred             CCC-CC--CCccEEEccCccccccCCcc--cc--cCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCc
Q 040184          339 SCS-SH--SSITQVHLSKNMLYGPLRYG--TF--FNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPI  411 (699)
Q Consensus       339 ~~~-~~--~~L~~L~l~~n~~~~~~~~~--~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  411 (699)
                      ..+ ..  ++|+.|++++|.+.+.++.-  .+  ..+++|+.|++++|.++...+..+..+++|+.|++++|++. .+|.
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~  714 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE  714 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred             hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence            333 11  23666666666655433211  01  13458999999999998554455568899999999999998 4444


Q ss_pred             c-cCC-------CCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecc
Q 040184          412 Q-LCR-------LKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKE  483 (699)
Q Consensus       412 ~-~~~-------l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (699)
                      . +..       +++|+.|++++|+++ .+|..+..                                            
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~--------------------------------------------  749 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA--------------------------------------------  749 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST--------------------------------------------
T ss_pred             HHhccccccccccCCccEEECCCCCCc-cchHHhhh--------------------------------------------
Confidence            3 332       238999999999987 55554430                                            


Q ss_pred             eeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccC------CcCcccCCccccCCCCCCEEeCCCCccccc
Q 040184          484 ISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSH------NNLTGVIPVTFSNLNQVESLDISYNNLNGK  557 (699)
Q Consensus       484 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  557 (699)
                             ..+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|..+..+++|+.|+|++|++ +.
T Consensus       750 -------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~  820 (876)
T 4ecn_A          750 -------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RK  820 (876)
T ss_dssp             -------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred             -------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Cc
Confidence                   124689999999999996 788899999999999976      788889999999999999999999999 57


Q ss_pred             CCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCC
Q 040184          558 IPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC  604 (699)
Q Consensus       558 ~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C  604 (699)
                      +|..+.  ++|+.|++++|++....+..+..........+.+|+..+
T Consensus       821 Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          821 VDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             CCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             cCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence            887765  699999999999988777666555556667777787765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3e-45  Score=416.38  Aligned_cols=355  Identities=19%  Similarity=0.203  Sum_probs=196.0

Q ss_pred             CCCCCC--CCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCc-ccc-cCCccccCC-------CCCCEEEccCCc
Q 040184          143 FRMPIQ--PHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRND-FNG-SIPSSIGDM-------NSLEALDLSHNQ  211 (699)
Q Consensus       143 ~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~-i~~-~~~~~~~~l-------~~L~~L~L~~n~  211 (699)
                      +|..++  ++++|++|++++|++.+.+|..+.. +++|++|+|++|+ +++ .+|..+..+       ++|+.|++++|.
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            444444  5555555555555555555544443 4555555555554 444 444433332       255555555555


Q ss_pred             CCCccch-HHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCC-CceEECCCCcCcCcC
Q 040184          212 LTGEIPE-HLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSH-LEGLYMSDNNLYGNI  289 (699)
Q Consensus       212 l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~  289 (699)
                      ++ .+|. ..+..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.++ .+
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            55 5554 12234555566666555555 444 5555566666666666655 45555555555 666666666655 44


Q ss_pred             chhhhccCC--CcEEeccCCcccccCCccc---c--CCCCCcEEEcccccCcccCCCCC-CCCCccEEEccCccccccCC
Q 040184          290 PAWLGNLSS--LYDIMMASNHLQGPIPLEF---C--QLNYLQILDLSENNISGSLPSCS-SHSSITQVHLSKNMLYGPLR  361 (699)
Q Consensus       290 ~~~~~~l~~--L~~L~l~~n~~~~~~~~~~---~--~l~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~  361 (699)
                      |..+..++.  |+.|++++|.+.+.+|...   .  .+++|+.|++++|.+....+..+ .+++|+.|++++|.+. .++
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip  713 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIP  713 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence            544444432  6666666666554433221   1  22355555555555542111111 2223333333333322 122


Q ss_pred             ccccc-------CCCCccEEECCCCCCCCCcChhhh--cCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCccccc
Q 040184          362 YGTFF-------NRSSIVTLDLSYNSFSGYIPYWIE--RLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQ  432 (699)
Q Consensus       362 ~~~~~-------~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~  432 (699)
                      ...+.       ++++|+.|++++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++++|+    
T Consensus       714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~----  787 (876)
T 4ecn_A          714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR----  787 (876)
T ss_dssp             TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----
T ss_pred             hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----
Confidence            11111       1224555555555554 3344443  45555555555555553 34444455555555554443    


Q ss_pred             CCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCc
Q 040184          433 IPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP  512 (699)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  512 (699)
                                                                                         ++++|.+.+.+|.
T Consensus       788 -------------------------------------------------------------------~ls~N~l~~~ip~  800 (876)
T 4ecn_A          788 -------------------------------------------------------------------DAEGNRILRQWPT  800 (876)
T ss_dssp             -------------------------------------------------------------------CTTCCBCCCCCCT
T ss_pred             -------------------------------------------------------------------CcccccccccChH
Confidence                                                                               1234778888999


Q ss_pred             cccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcc
Q 040184          513 QISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG  580 (699)
Q Consensus       513 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  580 (699)
                      .+..+++|++|+|++|++ +.+|..+.  ++|+.|||++|++....+..+.....+..+.+.+|++..
T Consensus       801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          801 GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence            999999999999999999 57777765  699999999999987777777776677888888887654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.7e-44  Score=402.10  Aligned_cols=513  Identities=19%  Similarity=0.172  Sum_probs=408.1

Q ss_pred             CCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCcccc
Q 040184            2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLE   81 (699)
Q Consensus         2 ~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~   81 (699)
                      +++++|||++|.|+ .+++.+|.++++|++|+|++|+|+ .++..+|.++++|++|+|++|++.......  +..+.+|+
T Consensus        52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~--f~~L~~L~  127 (635)
T 4g8a_A           52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQ  127 (635)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGG--GTTCTTCC
T ss_pred             cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHH--hcCCCCCC
Confidence            37899999999999 777668999999999999999998 677788999999999999999998765543  35566999


Q ss_pred             EEEccCCcCccccchhcCCCCCCCEEEcccCccccc-cchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCC----CCEE
Q 040184           82 SVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGE-FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWH----LDTL  156 (699)
Q Consensus        82 ~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~----L~~L  156 (699)
                      +|++++|.+++..+..|+++++|++|++++|.+++. .|.. +..+++|++|++++|.+++..+..+..+.+    ...+
T Consensus       128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~  206 (635)
T 4g8a_A          128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  206 (635)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred             EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccccccccchhhhhhhhhhh
Confidence            999999999998888999999999999999999753 4444 588999999999999999887777765544    4478


Q ss_pred             EccCccCCccCchhhhhcCCCCcEEeCcCCcccc-cCCccccCCCCCCEEEccCCcCCC-----ccchHHhhcCCCCcEE
Q 040184          157 YVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG-SIPSSIGDMNSLEALDLSHNQLTG-----EIPEHLAMSCFNLEFL  230 (699)
Q Consensus       157 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~~L~~L  230 (699)
                      +++.|.+. .++...+.. ..++.+++.+|.... ..+..+..+..++...+..+....     ......+.....+...
T Consensus       207 ~ls~n~l~-~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~  284 (635)
T 4g8a_A          207 DLSLNPMN-FIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE  284 (635)
T ss_dssp             ECTTCCCC-EECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred             hcccCccc-ccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence            89999987 556566553 367888888886542 344567778888777664332211     2222223345566666


Q ss_pred             EccCCcCC---ccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCC
Q 040184          231 VLSENSLL---GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASN  307 (699)
Q Consensus       231 ~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  307 (699)
                      ++..+...   ...+..+....+++.+++.++.+...  ..+....+++.|++.+|.+....+   ..+..|+.+++..|
T Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n  359 (635)
T 4g8a_A          285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSN  359 (635)
T ss_dssp             EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESC
T ss_pred             hhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccc
Confidence            66554332   23344566678899999998887744  346667889999999998875443   34578889999988


Q ss_pred             cccccCCccccCCCCCcEEEcccccCcccCCCC---CCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCC
Q 040184          308 HLQGPIPLEFCQLNYLQILDLSENNISGSLPSC---SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGY  384 (699)
Q Consensus       308 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~  384 (699)
                      .....  .....+++|+.+++++|.+.......   ....+++.+++..+....... . +..+++|+.++++.+.....
T Consensus       360 ~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~-~~~l~~L~~l~l~~~~~~~~  435 (635)
T 4g8a_A          360 KGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS-N-FLGLEQLEHLDFQHSNLKQM  435 (635)
T ss_dssp             CSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS-C-CTTCTTCCEEECTTSEEEST
T ss_pred             cCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc-c-ccccccccchhhhhcccccc
Confidence            77643  33457899999999999886432221   267889999999988755332 2 77899999999998877654


Q ss_pred             c-ChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccc-cCCCccccCCccCCCCCCCCCcccccccccc
Q 040184          385 I-PYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFG-QIPGCLDNTSLHNNGDNDDSLVPAFNHNVRS  462 (699)
Q Consensus       385 ~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (699)
                      . ...+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..                       
T Consensus       436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~-----------------------  492 (635)
T 4g8a_A          436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-----------------------  492 (635)
T ss_dssp             TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-----------------------
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh-----------------------
Confidence            4 4567889999999999999998888899999999999999998543 45555443                       


Q ss_pred             cccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCC
Q 040184          463 TYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN  542 (699)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  542 (699)
                                                    +++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|+.++
T Consensus       493 ------------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  542 (635)
T 4g8a_A          493 ------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN  542 (635)
T ss_dssp             ------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT
T ss_pred             ------------------------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC
Confidence                                          45899999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeCCCCcccccCCcccccC-CCCCeeecccCcCcccCC
Q 040184          543 QVESLDISYNNLNGKIPPQLVEL-NALAFFSVAHNNLSGKIP  583 (699)
Q Consensus       543 ~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~~  583 (699)
                      +|++|||++|+|++..|..+..+ ++|++|++++|++.|.+.
T Consensus       543 ~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          543 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            99999999999999999999988 689999999999999776

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.7e-42  Score=384.26  Aligned_cols=459  Identities=19%  Similarity=0.175  Sum_probs=268.5

Q ss_pred             ccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEcc
Q 040184           80 LESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVS  159 (699)
Q Consensus        80 L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~  159 (699)
                      .++++++++++++ +|..+.  ++|++|++++|.+++ ++...|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus        33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            3566666666654 333322  566666666666663 333234666666666666666666666666666666666666


Q ss_pred             CccCCccCchhhhhcCCCCcEEeCcCCccccc-CCccccCCCCCCEEEccCCcCCCccchHHhhcCCCC--cEEEccCCc
Q 040184          160 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS-IPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNL--EFLVLSENS  236 (699)
Q Consensus       160 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~n~  236 (699)
                      +|+++ .+|..   .+++|++|++++|.+++. .|..|+++++|++|++++|.+++ ..   +..+++|  ++|++++|.
T Consensus       109 ~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          109 HNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             TSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESS
T ss_pred             CCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeeccc
Confidence            66665 45544   356667777776666642 34566666777777777766652 11   1233444  777777766


Q ss_pred             C--CccCcccccCCC-CCcEEEccCCcCCccCC-ccCcCCCCCceEECCCCcCc----CcCchhhhccCCCcEEeccCCc
Q 040184          237 L--LGQLFSKKNYLR-KLVSLHLDANYFTGEIP-KSLSNCSHLEGLYMSDNNLY----GNIPAWLGNLSSLYDIMMASNH  308 (699)
Q Consensus       237 l--~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~  308 (699)
                      +  .+..|..+..+. ..-.+++++|.+.+..+ ..+..+++|+.|++++|+..    ......+..+++|+.+++.++.
T Consensus       181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~  260 (562)
T 3a79_B          181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE  260 (562)
T ss_dssp             CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred             ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence            6  555555554433 11144556666554333 23455666777777666311    0122345566666666666655


Q ss_pred             ccccC----CccccCCCCCcEEEcccccCcccCCCCC------CCCCccEEEccCccccccCCccccc---CCCCccEEE
Q 040184          309 LQGPI----PLEFCQLNYLQILDLSENNISGSLPSCS------SHSSITQVHLSKNMLYGPLRYGTFF---NRSSIVTLD  375 (699)
Q Consensus       309 ~~~~~----~~~~~~l~~L~~L~l~~n~i~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~~~~---~~~~L~~L~  375 (699)
                      +.+..    +.. ...++|++|++++|.+.+.+|...      .+..|+.+++..+.+  .++...+.   ...+|+.|+
T Consensus       261 l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~  337 (562)
T 3a79_B          261 TTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLS  337 (562)
T ss_dssp             ECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEE
T ss_pred             CcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEE
Confidence            44221    111 122367777777777665554432      223333333333333  22211111   124577777


Q ss_pred             CCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccC--CCccccCCccCCCCCCCCCc
Q 040184          376 LSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQI--PGCLDNTSLHNNGDNDDSLV  453 (699)
Q Consensus       376 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~--~~~~~~~~~~~~~~~~~~~~  453 (699)
                      +++|.+.....  ...+++|++|++++|++++..|..+..+++|+.|++++|++++..  |..+.               
T Consensus       338 l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---------------  400 (562)
T 3a79_B          338 ISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK---------------  400 (562)
T ss_dssp             EESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT---------------
T ss_pred             ccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc---------------
Confidence            77777653321  146677777777777777666777777777777777777776421  22222               


Q ss_pred             ccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCC-ccccccCccCeEEccCCcCcc
Q 040184          454 PAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP-PQISKLTRIRALNLSHNNLTG  532 (699)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~  532 (699)
                                                            .+++|+.|++++|.+++.+| ..+..+++|++|++++|++++
T Consensus       401 --------------------------------------~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  442 (562)
T 3a79_B          401 --------------------------------------NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG  442 (562)
T ss_dssp             --------------------------------------TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred             --------------------------------------CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence                                                  23477777777777776333 347777777777887777776


Q ss_pred             cCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCC
Q 040184          533 VIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD  612 (699)
Q Consensus       533 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~  612 (699)
                      ..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+..++.++.+++++|||.|     +|+
T Consensus       443 ~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c-----~c~  514 (562)
T 3a79_B          443 SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----TCP  514 (562)
T ss_dssp             GGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC-----CHH
T ss_pred             chhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC-----Ccc
Confidence            6555443  57777888888777 566655677778888888887775433336667777777788888877     665


Q ss_pred             CCCC
Q 040184          613 VAAV  616 (699)
Q Consensus       613 ~~~~  616 (699)
                      ..|+
T Consensus       515 ~~~~  518 (562)
T 3a79_B          515 GIRY  518 (562)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            5444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.2e-42  Score=383.33  Aligned_cols=461  Identities=18%  Similarity=0.145  Sum_probs=272.2

Q ss_pred             CCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCCCCC
Q 040184           26 LTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLE  105 (699)
Q Consensus        26 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~~L~  105 (699)
                      |...+++++++|.++ .+|.. +.  ++|+.|++++|.+....+..+  ..+++|++|++++|.+++..|.+|.++++|+
T Consensus        30 ~~~~~~l~ls~~~L~-~ip~~-~~--~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  103 (562)
T 3a79_B           30 NELESMVDYSNRNLT-HVPKD-LP--PRTKALSLSQNSISELRMPDI--SFLSELRVLRLSHNRIRSLDFHVFLFNQDLE  103 (562)
T ss_dssp             ---CCEEECTTSCCC-SCCTT-SC--TTCCEEECCSSCCCCCCGGGT--TTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             cCCCcEEEcCCCCCc-cCCCC-CC--CCcCEEECCCCCccccChhhh--ccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence            334456666666665 34432 21  455555555555544332222  2333555555555555555555555555666


Q ss_pred             EEEcccCccccccchhhhhCCCCCCEEEcCCCcCccc-CCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCC--cEEe
Q 040184          106 YVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL--VYLN  182 (699)
Q Consensus       106 ~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L--~~L~  182 (699)
                      +|++++|.++ .+|..   .+++|++|++++|.+.+. .|..++++++|++|++++|++++..   + ..+++|  ++|+
T Consensus       104 ~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~-~~l~~L~L~~L~  175 (562)
T 3a79_B          104 YLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---L-LPVAHLHLSCIL  175 (562)
T ss_dssp             EEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---T-GGGTTSCEEEEE
T ss_pred             EEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---h-hhhhhceeeEEE
Confidence            6666665555 44432   455566666665555542 2345555555555555555554211   1 112333  5555


Q ss_pred             CcCCcc--cccCCccccCCC--CCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccC
Q 040184          183 LSRNDF--NGSIPSSIGDMN--SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDA  258 (699)
Q Consensus       183 L~~n~i--~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  258 (699)
                      +++|.+  ++..|..+..+.  .+ .+++++|.+.+.++...+..+++|+.+++++|.....                  
T Consensus       176 L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~------------------  236 (562)
T 3a79_B          176 LDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ------------------  236 (562)
T ss_dssp             EEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH------------------
T ss_pred             eecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccc------------------
Confidence            555555  444455444432  11 3344555544444433333444455555544421000                  


Q ss_pred             CcCCccCCccCcCCCCCceEECCCCcCcCc----CchhhhccCCCcEEeccCCcccccCCccc-----cCCCCCcEEEcc
Q 040184          259 NYFTGEIPKSLSNCSHLEGLYMSDNNLYGN----IPAWLGNLSSLYDIMMASNHLQGPIPLEF-----CQLNYLQILDLS  329 (699)
Q Consensus       259 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~  329 (699)
                       .+. .....+..+++|+.|+++++.+.+.    .+..+ ..++|+.|++++|.+.+.+|..+     ..++.|+.++++
T Consensus       237 -~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~  313 (562)
T 3a79_B          237 -RLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK  313 (562)
T ss_dssp             -HHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEE
T ss_pred             -hHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcc
Confidence             011 0112234444555555544443321    11111 12356666666666665555554     444555555555


Q ss_pred             cccCcccCCCC-----CCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCc
Q 040184          330 ENNISGSLPSC-----SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNN  404 (699)
Q Consensus       330 ~n~i~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  404 (699)
                      .+.+  .+|..     +...+|+.|++++|.+....   ....+++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus       314 ~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  388 (562)
T 3a79_B          314 NQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG  388 (562)
T ss_dssp             ECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred             ccee--ecChhhhhhhhccCcceEEEccCCCccccc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence            5444  11110     01245777777777663221   12567889999999999998888888899999999999999


Q ss_pred             CCCCC--CcccCCCCCCCEEECcCCcccccCCCc-cccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEee
Q 040184          405 LEGEV--PIQLCRLKQLRLIDLSNNNIFGQIPGC-LDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTT  481 (699)
Q Consensus       405 l~~~~--~~~~~~l~~L~~L~ls~n~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (699)
                      +++..  |..+..+++|+.|++++|++++.+|.. +.                                           
T Consensus       389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-------------------------------------------  425 (562)
T 3a79_B          389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA-------------------------------------------  425 (562)
T ss_dssp             CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC-------------------------------------------
T ss_pred             cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc-------------------------------------------
Confidence            98633  456888999999999999998745532 22                                           


Q ss_pred             cceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcc
Q 040184          482 KEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQ  561 (699)
Q Consensus       482 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  561 (699)
                                .+++|+.|++++|++++..|..+.  ++|++|+|++|+++ .+|..+..+++|++|+|++|++++ +|..
T Consensus       426 ----------~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~  491 (562)
T 3a79_B          426 ----------WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDG  491 (562)
T ss_dssp             ----------CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTT
T ss_pred             ----------CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHH
Confidence                      245899999999999876666554  79999999999999 566666699999999999999994 5554


Q ss_pred             -cccCCCCCeeecccCcCcccCCC
Q 040184          562 -LVELNALAFFSVAHNNLSGKIPE  584 (699)
Q Consensus       562 -l~~l~~L~~L~l~~N~l~~~~~~  584 (699)
                       +..+++|+.|++++|++.|.++.
T Consensus       492 ~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          492 VFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             STTTCTTCCCEECCSCCBCCCHHH
T ss_pred             HHhcCCCCCEEEecCCCcCCCcch
Confidence             89999999999999999987763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.9e-40  Score=356.15  Aligned_cols=378  Identities=21%  Similarity=0.223  Sum_probs=240.0

Q ss_pred             CEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEcc
Q 040184          154 DTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLS  233 (699)
Q Consensus       154 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  233 (699)
                      +.++.+++.++ .+|. +   .+++++|+|++|.+++..|..|.++++|++|++++|.+.+.++...+..+++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            45666666666 5665 2   35888888888888887788888888899999988888767777666778888888888


Q ss_pred             CCcCCccCcccccCCCCCcEEEccCCcCCccCCc--cCcCCCCCceEECCCCcCcCcCchh-hhccCCCcEEeccCCccc
Q 040184          234 ENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPK--SLSNCSHLEGLYMSDNNLYGNIPAW-LGNLSSLYDIMMASNHLQ  310 (699)
Q Consensus       234 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~  310 (699)
                      +|.+.+..|..+.++++|++|++++|.+++..+.  .+..+++|++|++++|++.+..|.. +.++++|++|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            8888877788888888899999988888764443  4888888899999888888776665 788888888888888888


Q ss_pred             ccCCccccCC--CCCcEEEcccccCcccCCCCC---------CCCCccEEEccCccccccCCccccc---CCCCccEEEC
Q 040184          311 GPIPLEFCQL--NYLQILDLSENNISGSLPSCS---------SHSSITQVHLSKNMLYGPLRYGTFF---NRSSIVTLDL  376 (699)
Q Consensus       311 ~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~---~~~~L~~L~L  376 (699)
                      +..+..+..+  .+|+.+++++|.+.+..+...         ..++|+.|++++|.+.+..+.. +.   ..++|+.|++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLIL  246 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEEC
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhccccccceeeEee
Confidence            7777777665  678888888888775443221         2344555555555444333222 11   1244555555


Q ss_pred             CCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccC--CCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcc
Q 040184          377 SYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC--RLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVP  454 (699)
Q Consensus       377 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~  454 (699)
                      ++|...+....              .+.+.+..+..+.  ..++|+.|++++|.+++..|..+..               
T Consensus       247 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---------------  297 (455)
T 3v47_A          247 SNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH---------------  297 (455)
T ss_dssp             TTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT---------------
T ss_pred             ccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhccc---------------
Confidence            54433221000              0001101111111  1245555666666555554444332               


Q ss_pred             cccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccC
Q 040184          455 AFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVI  534 (699)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  534 (699)
                                                            +++|+.|++++|.+++..|..|..+++|++|+|++|++++..
T Consensus       298 --------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  339 (455)
T 3v47_A          298 --------------------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID  339 (455)
T ss_dssp             --------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             --------------------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence                                                  235555666666665555555556666666666666665555


Q ss_pred             CccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCC
Q 040184          535 PVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC  604 (699)
Q Consensus       535 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C  604 (699)
                      |..|..+++|++|+|++|++++..|..+..+++|++|++++|++++..+..+..+++++.+++++||+.|
T Consensus       340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            5555666666666666666655555555666666666666666655555555555566666666666666

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.6e-39  Score=351.28  Aligned_cols=367  Identities=19%  Similarity=0.175  Sum_probs=221.5

Q ss_pred             CCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEE
Q 040184          127 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALD  206 (699)
Q Consensus       127 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  206 (699)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+.+..|..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            44555555555555544555555555555555555554444444444455566666666665555555666666666666


Q ss_pred             ccCCcCCCccchH-HhhcCCCCcEEEccCCcCCccCccc-ccCCCCCcEEEccCCcCCccCCccCcCC--CCCceEECCC
Q 040184          207 LSHNQLTGEIPEH-LAMSCFNLEFLVLSENSLLGQLFSK-KNYLRKLVSLHLDANYFTGEIPKSLSNC--SHLEGLYMSD  282 (699)
Q Consensus       207 L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~l~~  282 (699)
                      +++|.+++.++.. .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+..+..+  .+|+.|++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            6666655333221 2334555566666655555544443 4555666666666666555555555443  4556666666


Q ss_pred             CcCcCcCchh--------hhccCCCcEEeccCCcccccCCccccCC---CCCcEEEcccccCcccCCCCCCCCCccEEEc
Q 040184          283 NNLYGNIPAW--------LGNLSSLYDIMMASNHLQGPIPLEFCQL---NYLQILDLSENNISGSLPSCSSHSSITQVHL  351 (699)
Q Consensus       283 n~l~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l  351 (699)
                      |.+.+..+..        +..+++|+.|++++|.+.+..|..+...   ++|+.|++++|...+....            
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------  257 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------  257 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------
Confidence            6555433222        1233455555555555554444433322   4555555555544321110            


Q ss_pred             cCccccccCCcccccCCCCccEEECCCCCCCCCcChhhh--cCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcc
Q 040184          352 SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIE--RLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI  429 (699)
Q Consensus       352 ~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i  429 (699)
                                                .+.+.+..+..+.  ..++|++|++++|++.+..+..+..+++|+.|++++|++
T Consensus       258 --------------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  311 (455)
T 3v47_A          258 --------------------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI  311 (455)
T ss_dssp             --------------------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             --------------------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence                                      0111111111111  135667777777777666666677777777777777777


Q ss_pred             cccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCcc
Q 040184          430 FGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE  509 (699)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  509 (699)
                      ++..|..+..                                                     +++|+.|++++|.+++.
T Consensus       312 ~~~~~~~~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~~  338 (455)
T 3v47_A          312 NKIDDNAFWG-----------------------------------------------------LTHLLKLNLSQNFLGSI  338 (455)
T ss_dssp             CEECTTTTTT-----------------------------------------------------CTTCCEEECCSSCCCEE
T ss_pred             cccChhHhcC-----------------------------------------------------cccCCEEECCCCccCCc
Confidence            6665555433                                                     24677777777777777


Q ss_pred             CCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCC
Q 040184          510 IPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPE  584 (699)
Q Consensus       510 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~  584 (699)
                      .|..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++.+|.
T Consensus       339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            778888899999999999999988888899999999999999999977777788899999999999999988885

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1e-37  Score=334.06  Aligned_cols=401  Identities=24%  Similarity=0.281  Sum_probs=191.0

Q ss_pred             cccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCC-------------CCCEEEcCCCcCcccCCC
Q 040184           79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNT-------------NLNTLVLRNNSLSGPFRM  145 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~-------------~L~~L~Ls~n~i~~~~~~  145 (699)
                      +|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..+ .+++             ++++|++++|.+++. |.
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~   88 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE   88 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccC-CC
Confidence            455555555555 4445555555555555555555554444442 3333             346666666666652 22


Q ss_pred             CCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCC
Q 040184          146 PIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCF  225 (699)
Q Consensus       146 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  225 (699)
                         -.++|++|++++|.+++ +|..    +++|++|++++|.+++ ++..   .++|++|++++|.++ .+|.  +..++
T Consensus        89 ---~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l~  153 (454)
T 1jl5_A           89 ---LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNSS  153 (454)
T ss_dssp             ---CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTCT
T ss_pred             ---CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCCC
Confidence               12566666666666663 4432    2466677776666653 2211   146667777776666 4552  34566


Q ss_pred             CCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEecc
Q 040184          226 NLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMA  305 (699)
Q Consensus       226 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  305 (699)
                      +|++|++++|.+.+ +|..   ..+|++|++++|.+++ +| .++.+++|+.|++++|++++ +|..   .++|+.|+++
T Consensus       154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~  223 (454)
T 1jl5_A          154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG  223 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred             CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence            67777777666654 3332   2467777777777664 34 46667777777777776664 2322   2466777777


Q ss_pred             CCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCc
Q 040184          306 SNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI  385 (699)
Q Consensus       306 ~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~  385 (699)
                      +|.+. .+| .+..+++|++|++++|++.+ +|.  ..++|+.|++++|.+.+ ++.    .+++|+.|++++|.+++..
T Consensus       224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~l~~-l~~----~~~~L~~L~ls~N~l~~l~  293 (454)
T 1jl5_A          224 NNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNYLTD-LPE----LPQSLTFLDVSENIFSGLS  293 (454)
T ss_dssp             SSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSEES
T ss_pred             CCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCcccc-cCc----ccCcCCEEECcCCccCccc
Confidence            77666 444 36667777777777776664 222  23566666666666543 222    1356677777777666421


Q ss_pred             ChhhhcCCCCCEEEcccCcCCCCCCcccCCC-CCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccc
Q 040184          386 PYWIERLTYLRYLILANNNLEGEVPIQLCRL-KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTY  464 (699)
Q Consensus       386 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (699)
                       .   ..++|++|++++|++++.     ..+ ++|+.|++++|++++ +|..                            
T Consensus       294 -~---~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~----------------------------  335 (454)
T 1jl5_A          294 -E---LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL----------------------------  335 (454)
T ss_dssp             -C---CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC----------------------------
T ss_pred             -C---cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc----------------------------
Confidence             1   114667777777766631     122 467777777777653 3321                            


Q ss_pred             cCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcc--cCCccccCCC
Q 040184          465 SAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTG--VIPVTFSNLN  542 (699)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~  542 (699)
                                                  +++|+.|++++|.+++ +|.   .+++|++|++++|++++  .+|..+..  
T Consensus       336 ----------------------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--  381 (454)
T 1jl5_A          336 ----------------------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--  381 (454)
T ss_dssp             ----------------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--
T ss_pred             ----------------------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--
Confidence                                        2366677777777763 444   35677777777777766  44444332  


Q ss_pred             CCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcc--cCCCCCcCCCCCCCCccCCCCCCC
Q 040184          543 QVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG--KIPEWTAQFTTFKEDSYEGNPLLC  604 (699)
Q Consensus       543 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~~~~~~Np~~C  604 (699)
                            ++.|...+.+|..   +++|+.|++++|++++  .+|.      +++.+.+.+|.+.|
T Consensus       382 ------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~  430 (454)
T 1jl5_A          382 ------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVD  430 (454)
T ss_dssp             ------EECCC-----------------------------------------------------
T ss_pred             ------hhhcccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCC
Confidence                  2334555555542   3788999999999887  4554      34555667766666

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.1e-37  Score=331.58  Aligned_cols=387  Identities=23%  Similarity=0.229  Sum_probs=183.6

Q ss_pred             CCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCC-------------CEEEccCccCCcc
Q 040184          100 NQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHL-------------DTLYVSKNFFQGN  166 (699)
Q Consensus       100 ~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~l~~n~i~~~  166 (699)
                      ..++|++|++++|.+ +.+|..+ +++++|++|++++|.+.+..|..++.+++|             ++|++++|.++ .
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~   85 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S   85 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-C
T ss_pred             ccccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-c
Confidence            357899999999999 6899885 899999999999999999999999988876             66666666665 2


Q ss_pred             CchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCccccc
Q 040184          167 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKN  246 (699)
Q Consensus       167 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  246 (699)
                      +|.    ..++|++|++++|.+++ +|..   .++|++|++++|.++ .++..    .++|++|++++|.+.+ +| .+.
T Consensus        86 lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~  150 (454)
T 1jl5_A           86 LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQ  150 (454)
T ss_dssp             CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCT
T ss_pred             CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccC
Confidence            333    12456666666666654 3432   255666666666665 33321    2456666666666654 33 356


Q ss_pred             CCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEE
Q 040184          247 YLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQIL  326 (699)
Q Consensus       247 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  326 (699)
                      .+++|++|++++|.+++ +|..+   ++|++|++++|++++ +| .++++++|+.|++++|.+.+ +|..   .++|++|
T Consensus       151 ~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L  220 (454)
T 1jl5_A          151 NSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESI  220 (454)
T ss_dssp             TCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEE
T ss_pred             CCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEE
Confidence            66666666666666653 33322   356666666666654 33 35556666666666665553 2221   1355666


Q ss_pred             EcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCC
Q 040184          327 DLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLE  406 (699)
Q Consensus       327 ~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  406 (699)
                      ++++|.+. .+|....+++|+.|++++|.+.+ ++.    .+++|+.|++++|++++ +|..   .++|++|++++|+++
T Consensus       221 ~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          221 VAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS  290 (454)
T ss_dssp             ECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             ECcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence            66666555 33433355555555555555543 111    12455555555555554 2221   245555555555555


Q ss_pred             CCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceee
Q 040184          407 GEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISF  486 (699)
Q Consensus       407 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (699)
                      +. +.   ..++|+.|++++|++++. +.                                                   
T Consensus       291 ~l-~~---~~~~L~~L~l~~N~l~~i-~~---------------------------------------------------  314 (454)
T 1jl5_A          291 GL-SE---LPPNLYYLNASSNEIRSL-CD---------------------------------------------------  314 (454)
T ss_dssp             EE-SC---CCTTCCEEECCSSCCSEE-CC---------------------------------------------------
T ss_pred             cc-cC---cCCcCCEEECcCCcCCcc-cC---------------------------------------------------
Confidence            31 11   013555555555555421 10                                                   


Q ss_pred             eeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccc--cCCccccc
Q 040184          487 SYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNG--KIPPQLVE  564 (699)
Q Consensus       487 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~  564 (699)
                           .+++|+.|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|++|++++|++++  .+|..+..
T Consensus       315 -----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~  381 (454)
T 1jl5_A          315 -----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED  381 (454)
T ss_dssp             -----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred             -----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence                 01255666666666664 3332   3566666666666663 333   34566666666666664  34433321


Q ss_pred             CCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCC
Q 040184          565 LNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC  604 (699)
Q Consensus       565 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C  604 (699)
                              ++.|.+.+.+|..   +++++.+++++|++..
T Consensus       382 --------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          382 --------LRMNSHLAEVPEL---PQNLKQLHVETNPLRE  410 (454)
T ss_dssp             --------EECCC---------------------------
T ss_pred             --------hhhcccccccccc---cCcCCEEECCCCcCCc
Confidence                    2345555555542   3789999999999876

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.7e-37  Score=333.79  Aligned_cols=347  Identities=20%  Similarity=0.188  Sum_probs=214.5

Q ss_pred             cEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccC
Q 040184          179 VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDA  258 (699)
Q Consensus       179 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  258 (699)
                      +.++.++++++ .+|..+.  ++++.|++++|.++ .++...+..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            34555555554 3343332  34555555555555 33333333455555555555555544455555555555555555


Q ss_pred             CcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCC
Q 040184          259 NYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLP  338 (699)
Q Consensus       259 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  338 (699)
                      |.++...+..|.++++|+.|++++|++.+..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.    
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----  165 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT----  165 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS----
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc----
Confidence            5555433344455555555555555554444444444555555555555444444444444444444444444433    


Q ss_pred             CCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCC
Q 040184          339 SCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQ  418 (699)
Q Consensus       339 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  418 (699)
                                         + ++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+..+.......+
T Consensus       166 -------------------~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          166 -------------------S-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             -------------------S-CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             -------------------c-cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence                               2 22333677788888888888888777777788888888888888776666655555668


Q ss_pred             CCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccE
Q 040184          419 LRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYG  498 (699)
Q Consensus       419 L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  498 (699)
                      |+.|++++|.+++..+..+..                                                     +++|+.
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~  252 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRH-----------------------------------------------------LVYLRF  252 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTT-----------------------------------------------------CTTCCE
T ss_pred             ccEEECcCCcccccCHHHhcC-----------------------------------------------------ccccCe
Confidence            888888888876433233322                                                     357888


Q ss_pred             EEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcC
Q 040184          499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNL  578 (699)
Q Consensus       499 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l  578 (699)
                      |++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            88888888877777788888888888888888888888888888888888888888876666777888888888888888


Q ss_pred             cccCCCCCcCCCCCCCCccCCCCCCCCCC
Q 040184          579 SGKIPEWTAQFTTFKEDSYEGNPLLCGKP  607 (699)
Q Consensus       579 ~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  607 (699)
                      .+.++..+ .+.......+.+++..|..|
T Consensus       333 ~c~c~~~~-~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          333 ACDCRLLW-VFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             ECSGGGHH-HHTTTTSSCCTTCCCBEEES
T ss_pred             cCccchHh-HHhhhhccccCccCceeCCc
Confidence            77655321 12233445667777777544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=329.20  Aligned_cols=351  Identities=21%  Similarity=0.189  Sum_probs=295.1

Q ss_pred             CCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEc
Q 040184          153 LDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVL  232 (699)
Q Consensus       153 L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  232 (699)
                      -+.++.+++.++ .+|..+.   +++++|+|++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L   87 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL   87 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEEC
Confidence            357888888887 7887664   48999999999999888889999999999999999998 554445568999999999


Q ss_pred             cCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCccccc
Q 040184          233 SENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGP  312 (699)
Q Consensus       233 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  312 (699)
                      ++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+.+.
T Consensus        88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            99999877777889999999999999999988888999999999999999999988888899999999999999999977


Q ss_pred             CCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcC
Q 040184          313 IPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERL  392 (699)
Q Consensus       313 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l  392 (699)
                      .+..+..+++|+.|++++|.+.+..+                        ..|..+++|+.|++++|...+.++......
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~~~------------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  223 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAIRD------------------------YSFKRLYRLKVLEISHWPYLDTMTPNCLYG  223 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEECT------------------------TCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEeCh------------------------hhcccCcccceeeCCCCccccccCcccccC
Confidence            77778899999999999988764322                        226778899999999998877777666667


Q ss_pred             CCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCccc
Q 040184          393 TYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTME  472 (699)
Q Consensus       393 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (699)
                      .+|++|++++|++++..+..+..+++|+.|++++|++++..+..+..                                 
T Consensus       224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------------------------  270 (477)
T 2id5_A          224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE---------------------------------  270 (477)
T ss_dssp             CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT---------------------------------
T ss_pred             ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc---------------------------------
Confidence            79999999999999666678899999999999999998776655543                                 


Q ss_pred             ccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCC
Q 040184          473 KEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN  552 (699)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  552 (699)
                                          +++|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus       271 --------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          271 --------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             --------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             --------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence                                458999999999999988999999999999999999999888888999999999999999


Q ss_pred             cccccCCcccccCCCCCeeecccCcCcccCCCCC
Q 040184          553 NLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWT  586 (699)
Q Consensus       553 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~  586 (699)
                      .+....+. ..-......+++.++...+..|..+
T Consensus       331 ~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~~~  363 (477)
T 2id5_A          331 PLACDCRL-LWVFRRRWRLNFNRQQPTCATPEFV  363 (477)
T ss_dssp             CEECSGGG-HHHHTTTTSSCCTTCCCBEEESGGG
T ss_pred             CccCccch-HhHHhhhhccccCccCceeCCchHH
Confidence            99854322 1112334456677777777777543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.3e-35  Score=317.66  Aligned_cols=345  Identities=25%  Similarity=0.346  Sum_probs=208.3

Q ss_pred             CCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEE
Q 040184          127 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALD  206 (699)
Q Consensus       127 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  206 (699)
                      ++++.|+++++.+... + .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus        46 ~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             ccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            4445555554444431 1 2444445555555555544 2222  2224555555555555553322  55555555555


Q ss_pred             ccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCc
Q 040184          207 LSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY  286 (699)
Q Consensus       207 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  286 (699)
                      +++|.++ .++.  +..+++|++|++++|.+.+.  ..+..+++|++|+++ +.+.+.  ..+..+++|+.|++++|.+.
T Consensus       119 L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          119 LFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             CCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence            5555555 3332  23455555555555555432  134555666666654 233322  22556666666666666665


Q ss_pred             CcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCccccc
Q 040184          287 GNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFF  366 (699)
Q Consensus       287 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  366 (699)
                      +.  ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+.                          ..+.
T Consensus       191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--------------------------~~l~  240 (466)
T 1o6v_A          191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--------------------------GTLA  240 (466)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------------------------GGGG
T ss_pred             CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--------------------------hhhh
Confidence            32  235566666666666666654433  44556666666666655421                          1255


Q ss_pred             CCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCC
Q 040184          367 NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNG  446 (699)
Q Consensus       367 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~  446 (699)
                      .+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++.+..+  +.        
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~--------  306 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS--------  306 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG--------
T ss_pred             cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc--------
Confidence            56677777777777765444  6677777777777777774433  6677778888887777764322  11        


Q ss_pred             CCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEcc
Q 040184          447 DNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLS  526 (699)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  526 (699)
                                                                   .+++|+.|++++|++++..|  +..+++|++|+++
T Consensus       307 ---------------------------------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  339 (466)
T 1o6v_A          307 ---------------------------------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY  339 (466)
T ss_dssp             ---------------------------------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred             ---------------------------------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence                                                         24577888888888876554  6788888888888


Q ss_pred             CCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCccc
Q 040184          527 HNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGK  581 (699)
Q Consensus       527 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  581 (699)
                      +|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            8888865  467888888888888888887665  77888888888888888763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5e-36  Score=321.19  Aligned_cols=375  Identities=19%  Similarity=0.146  Sum_probs=242.2

Q ss_pred             ccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEcc
Q 040184           80 LESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVS  159 (699)
Q Consensus        80 L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~  159 (699)
                      ++......+......+..+.++++|++|++++|.+++ +| . +..+++|++|++++|.+++. +  ++.+++|++|+++
T Consensus        20 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls   93 (457)
T 3bz5_A           20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACD   93 (457)
T ss_dssp             HHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECC
T ss_pred             HHHHHHHhcCcCcccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECc
Confidence            3333333334444445566677788888888888774 45 2 46778888888888877764 2  6777778888888


Q ss_pred             CccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCc
Q 040184          160 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG  239 (699)
Q Consensus       160 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  239 (699)
                      +|++++ ++  + ..+++|++|++++|.+++. |  ++.+++|++|++++|.++ .++   +..+++|++|++++|...+
T Consensus        94 ~N~l~~-~~--~-~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~  162 (457)
T 3bz5_A           94 SNKLTN-LD--V-TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKIT  162 (457)
T ss_dssp             SSCCSC-CC--C-TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCC
T ss_pred             CCCCce-ee--c-CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCccc
Confidence            877774 33  3 3367778888887777753 3  677777888888877777 343   2457777777777775444


Q ss_pred             cCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccC
Q 040184          240 QLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQ  319 (699)
Q Consensus       240 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  319 (699)
                      .+  .+..+++|++|++++|.+++ +|  +..+++|+.|++++|++++.   .++.+++|+.|++++|++.+ +|  +..
T Consensus       163 ~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~  231 (457)
T 3bz5_A          163 KL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTP  231 (457)
T ss_dssp             CC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTT
T ss_pred             cc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccc
Confidence            33  35667777777777777774 33  66677777777777777653   25666777777777777765 33  566


Q ss_pred             CCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEE
Q 040184          320 LNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLI  399 (699)
Q Consensus       320 l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  399 (699)
                      +++|+.|++++|.+.+..                           ...+++|+.|++++|              +|+.|+
T Consensus       232 l~~L~~L~l~~N~l~~~~---------------------------~~~l~~L~~L~l~~n--------------~L~~L~  270 (457)
T 3bz5_A          232 LTQLTYFDCSVNPLTELD---------------------------VSTLSKLTTLHCIQT--------------DLLEID  270 (457)
T ss_dssp             CTTCSEEECCSSCCSCCC---------------------------CTTCTTCCEEECTTC--------------CCSCCC
T ss_pred             cCCCCEEEeeCCcCCCcC---------------------------HHHCCCCCEEeccCC--------------CCCEEE
Confidence            667777777777666432                           222334444444432              233444


Q ss_pred             cccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEE
Q 040184          400 LANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMF  479 (699)
Q Consensus       400 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (699)
                      +++|++.+..|  +..+++|+.|++++|...+.+|.....+...                                    
T Consensus       271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L------------------------------------  312 (457)
T 3bz5_A          271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL------------------------------------  312 (457)
T ss_dssp             CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC------------------------------------
T ss_pred             CCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe------------------------------------
Confidence            44444443333  3345555555555555544444221111100                                    


Q ss_pred             eecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 040184          480 TTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIP  559 (699)
Q Consensus       480 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  559 (699)
                               .....++|+.|++++|++++.   .++.+++|+.|++++|++++.        +.|+.|++++|.+.|.  
T Consensus       313 ---------~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~--  370 (457)
T 3bz5_A          313 ---------DLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE--  370 (457)
T ss_dssp             ---------CCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE--
T ss_pred             ---------chhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec--
Confidence                     001234788999999999974   388999999999999999862        4677788999999865  


Q ss_pred             cccccCCCCCeeecccCcCcccCCCCC
Q 040184          560 PQLVELNALAFFSVAHNNLSGKIPEWT  586 (699)
Q Consensus       560 ~~l~~l~~L~~L~l~~N~l~~~~~~~~  586 (699)
                         ..+..|..+++++|+++|.+|..+
T Consensus       371 ---~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          371 ---GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             ---EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             ---ceeeecCccccccCcEEEEcChhH
Confidence               345678889999999999998754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.2e-35  Score=316.16  Aligned_cols=345  Identities=25%  Similarity=0.340  Sum_probs=220.7

Q ss_pred             CCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcE
Q 040184          101 QHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY  180 (699)
Q Consensus       101 ~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~  180 (699)
                      +++++.|+++++.+. .+|.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ ++.  +..+++|++
T Consensus        45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCE
T ss_pred             hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCCE
Confidence            345555555555554 3443  3455666666666665554433  5556666666666666553 232  233566666


Q ss_pred             EeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCc
Q 040184          181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANY  260 (699)
Q Consensus       181 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  260 (699)
                      |++++|.+++..+  +..+++|++|++++|.+. .++.  +..+++|++|+++ |.+.+.  ..+..+++|++|++++|.
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence            6666666654322  666666666666666665 3442  3456677777765 333322  226667777777777777


Q ss_pred             CCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCC
Q 040184          261 FTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC  340 (699)
Q Consensus       261 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  340 (699)
                      +++.  ..+..+++|+.|++++|.+.+..+  ++.+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--  260 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--  260 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence            7643  346777778888888877775544  66677888888888877643  356677788888888777663221  


Q ss_pred             CCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCC
Q 040184          341 SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLR  420 (699)
Q Consensus       341 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  420 (699)
                                              +..+++|+.|++++|.+++..+  +..+++|+.|++++|++.+..+  +..+++|+
T Consensus       261 ------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  312 (466)
T 1o6v_A          261 ------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT  312 (466)
T ss_dssp             ------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred             ------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence                                    4445566666666666664433  5666677777777777664333  56677777


Q ss_pred             EEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEE
Q 040184          421 LIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVD  500 (699)
Q Consensus       421 ~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  500 (699)
                      .|++++|++++..|  +.                                                     .+++|+.|+
T Consensus       313 ~L~L~~n~l~~~~~--~~-----------------------------------------------------~l~~L~~L~  337 (466)
T 1o6v_A          313 YLTLYFNNISDISP--VS-----------------------------------------------------SLTKLQRLF  337 (466)
T ss_dssp             EEECCSSCCSCCGG--GG-----------------------------------------------------GCTTCCEEE
T ss_pred             EEECcCCcCCCchh--hc-----------------------------------------------------cCccCCEeE
Confidence            77777777664433  11                                                     235777777


Q ss_pred             ccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 040184          501 LSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNG  556 (699)
Q Consensus       501 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  556 (699)
                      +++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|.+++
T Consensus       338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            777777754  467888889999999999887766  7888999999999998885

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.8e-35  Score=308.52  Aligned_cols=332  Identities=19%  Similarity=0.174  Sum_probs=186.8

Q ss_pred             CCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEE
Q 040184          176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLH  255 (699)
Q Consensus       176 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  255 (699)
                      ++++.|++++|.++...+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45555555555555433333445555555555555554 33333333455555555555555444444445555555555


Q ss_pred             ccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcc
Q 040184          256 LDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG  335 (699)
Q Consensus       256 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~  335 (699)
                      +++|.++...+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.   .+..+++|+.+++++|.+. 
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-  199 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-  199 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS-
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc-
Confidence            555555433333344455555555555555444444444455555555555544432   1233344444444444433 


Q ss_pred             cCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCC
Q 040184          336 SLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR  415 (699)
Q Consensus       336 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  415 (699)
                                            +      +...++|++|++++|.+.....   ...++|+.|++++|++++.  ..+..
T Consensus       200 ----------------------~------~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~  246 (390)
T 3o6n_A          200 ----------------------T------LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLN  246 (390)
T ss_dssp             ----------------------E------EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGG
T ss_pred             ----------------------c------cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcC
Confidence                                  2      2223456666666666654322   1235666666666666532  34566


Q ss_pred             CCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCc
Q 040184          416 LKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNK  495 (699)
Q Consensus       416 l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  495 (699)
                      +++|+.|++++|.+++..|..+..                                                     +++
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~-----------------------------------------------------l~~  273 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKIMYHPFVK-----------------------------------------------------MQR  273 (390)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTT-----------------------------------------------------CSS
T ss_pred             CCCccEEECCCCcCCCcChhHccc-----------------------------------------------------ccc
Confidence            666666666666666555544432                                                     236


Q ss_pred             ccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeeccc
Q 040184          496 MYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAH  575 (699)
Q Consensus       496 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  575 (699)
                      |+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++.. +  +..+++|+.|++++
T Consensus       274 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~  348 (390)
T 3o6n_A          274 LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSH  348 (390)
T ss_dssp             CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCS
T ss_pred             CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCC
Confidence            6666666666663 3555567778888888888887 4556677788888888888888743 3  56777888888888


Q ss_pred             CcCcccCCCCCcCCCCCCCCccCCCCCCCC
Q 040184          576 NNLSGKIPEWTAQFTTFKEDSYEGNPLLCG  605 (699)
Q Consensus       576 N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~  605 (699)
                      |++.+.....  .+..+....+.+++..|.
T Consensus       349 N~~~~~~~~~--~~~~~~~~~~~~~~~~c~  376 (390)
T 3o6n_A          349 NDWDCNSLRA--LFRNVARPAVDDADQHCK  376 (390)
T ss_dssp             SCEEHHHHHH--HTTTCCTTTBCCCCSCCC
T ss_pred             CCccchhHHH--HHHHHHhhcccccCceec
Confidence            8887755432  355666667777887774

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.4e-34  Score=309.93  Aligned_cols=353  Identities=17%  Similarity=0.141  Sum_probs=202.6

Q ss_pred             cccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCC
Q 040184           22 PLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQ  101 (699)
Q Consensus        22 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~  101 (699)
                      .++.+++|++|++++|.+++ +|  .+..+++|++|++++|.+....     +..+.+|++|++++|.+++. +  +.++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~L~~L~Ls~N~l~~~-~--~~~l  105 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTLD-----LSQNTNLTYLACDSNKLTNL-D--VTPL  105 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred             ChhHcCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeEc-----cccCCCCCEEECcCCCCcee-e--cCCC
Confidence            34555555555555555552 33  3555555555555555554431     23333555555555555543 2  5555


Q ss_pred             CCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEE
Q 040184          102 HDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL  181 (699)
Q Consensus       102 ~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L  181 (699)
                      ++|++|++++|.+++ ++   +..+++|++|++++|.+++.   .++.+++|++|++++|+..+.++  + ..+++|++|
T Consensus       106 ~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~L~~L  175 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--V-TPQTQLTTL  175 (457)
T ss_dssp             TTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--C-TTCTTCCEE
T ss_pred             CcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--c-ccCCcCCEE
Confidence            556666666655553 33   34555666666666555542   25555556666666554333332  1 124556666


Q ss_pred             eCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcC
Q 040184          182 NLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYF  261 (699)
Q Consensus       182 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i  261 (699)
                      ++++|.+++ +|  +..+++|+.|++++|.++ .++   +..+++|++|++++|.+.+ +|  +..+++|++|++++|.+
T Consensus       176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~-~~~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             ECCSSCCCC-CC--CTTCTTCCEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred             ECCCCccce-ec--cccCCCCCEEECcCCcCC-eec---cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence            666666554 22  555556666666666555 232   2345566666666666554 22  45555666666666665


Q ss_pred             CccCCccCcCCC-------CCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCc
Q 040184          262 TGEIPKSLSNCS-------HLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS  334 (699)
Q Consensus       262 ~~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~  334 (699)
                      ++..+..+..++       +|+.|++++|.+.+..|  ++.+++|+.|++++|...+.+|.   ..++|+.+++++|   
T Consensus       246 ~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~---  317 (457)
T 3bz5_A          246 TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN---  317 (457)
T ss_dssp             SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC---
T ss_pred             CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc---
Confidence            543322222111       34445555555444444  34566677777777665554442   3344555555443   


Q ss_pred             ccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccC
Q 040184          335 GSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC  414 (699)
Q Consensus       335 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  414 (699)
                               ++|+.|++++|.+.+. +   +..+++|+.|++++|++++        ++.|..|++++|.+.+.     .
T Consensus       318 ---------~~L~~L~L~~N~l~~l-~---l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~  371 (457)
T 3bz5_A          318 ---------PKLVYLYLNNTELTEL-D---VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----G  371 (457)
T ss_dssp             ---------TTCCEEECTTCCCSCC-C---CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----E
T ss_pred             ---------ccCCEEECCCCccccc-c---cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----c
Confidence                     5788888888888763 2   7788889999999888875        35566777888888754     2


Q ss_pred             CCCCCCEEECcCCcccccCCCcccc
Q 040184          415 RLKQLRLIDLSNNNIFGQIPGCLDN  439 (699)
Q Consensus       415 ~l~~L~~L~ls~n~i~~~~~~~~~~  439 (699)
                      .+..|..+++++|+++|.+|..+..
T Consensus       372 ~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          372 QTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             EEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             eeeecCccccccCcEEEEcChhHhc
Confidence            4556788899999999999876544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5.2e-34  Score=317.67  Aligned_cols=333  Identities=19%  Similarity=0.162  Sum_probs=202.9

Q ss_pred             CCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEE
Q 040184          176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLH  255 (699)
Q Consensus       176 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  255 (699)
                      ++++.+++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..|+++++|++|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45555555555555444444555555555555555555 33333334455555555555555555555555555555555


Q ss_pred             ccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcc
Q 040184          256 LDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG  335 (699)
Q Consensus       256 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~  335 (699)
                      +++|.+++..+..|..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+.+..   +..+++|+.|++++|.+.+
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence            5555555443444455555555555555555544445555555555555555554321   2334445555555544432


Q ss_pred             cCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCC
Q 040184          336 SLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR  415 (699)
Q Consensus       336 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  415 (699)
                                                   +...++|+.|++++|.+....+..   .++|+.|++++|.+++  +..+..
T Consensus       207 -----------------------------l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~  252 (597)
T 3oja_B          207 -----------------------------LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLN  252 (597)
T ss_dssp             -----------------------------EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGG
T ss_pred             -----------------------------ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--Chhhcc
Confidence                                         223345666666666665432221   2467777777777664  345666


Q ss_pred             CCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCc
Q 040184          416 LKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNK  495 (699)
Q Consensus       416 l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  495 (699)
                      +++|+.|++++|.+.+..|..+..                                                     +++
T Consensus       253 l~~L~~L~Ls~N~l~~~~~~~~~~-----------------------------------------------------l~~  279 (597)
T 3oja_B          253 YPGLVEVDLSYNELEKIMYHPFVK-----------------------------------------------------MQR  279 (597)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTT-----------------------------------------------------CSS
T ss_pred             CCCCCEEECCCCccCCCCHHHhcC-----------------------------------------------------ccC
Confidence            777777777777776665655443                                                     236


Q ss_pred             ccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeeccc
Q 040184          496 MYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAH  575 (699)
Q Consensus       496 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  575 (699)
                      |+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++. |  +..+++|+.|++++
T Consensus       280 L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~  354 (597)
T 3oja_B          280 LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSH  354 (597)
T ss_dssp             CCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCS
T ss_pred             CCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeC
Confidence            7777777777774 4556677888888999998888 5667778888999999999988854 2  56778899999999


Q ss_pred             CcCcccCCCCCcCCCCCCCCccCCCCCCCCC
Q 040184          576 NNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK  606 (699)
Q Consensus       576 N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~  606 (699)
                      |++.|.+...  .+..+....+.+++..|+.
T Consensus       355 N~~~~~~~~~--~~~~~~~~~~~~~~~~C~~  383 (597)
T 3oja_B          355 NDWDCNSLRA--LFRNVARPAVDDADQHCKI  383 (597)
T ss_dssp             SCEEHHHHHH--HTTTCCTTTBCCCCCCCCT
T ss_pred             CCCCChhHHH--HHHHHhhhccccccccCCc
Confidence            9998765432  3566666778888888854

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.3e-32  Score=282.80  Aligned_cols=302  Identities=22%  Similarity=0.286  Sum_probs=136.1

Q ss_pred             CCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCcccc
Q 040184            2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLE   81 (699)
Q Consensus         2 ~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~   81 (699)
                      ++|++|+++++.+. .++.  +..+++|++|++++|.++ .++.  +..+++|++|++++|.+....    .+..+++|+
T Consensus        44 ~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~----~~~~l~~L~  113 (347)
T 4fmz_A           44 ESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS----ALQNLTNLR  113 (347)
T ss_dssp             TTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG----GGTTCTTCS
T ss_pred             ccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch----HHcCCCcCC
Confidence            34555555555554 3433  455555555555555554 2221  445555555555555444321    123333455


Q ss_pred             EEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCc
Q 040184           82 SVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKN  161 (699)
Q Consensus        82 ~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n  161 (699)
                      +|++++|.+.+..+  +..+++|++|++++|.....++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            55555555443322  44455555555555533322222  2445555555555554443222  444445555555555


Q ss_pred             cCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccC
Q 040184          162 FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQL  241 (699)
Q Consensus       162 ~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  241 (699)
                      .+. .++.  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.++ .++.  +..+++|++|++++|.+.+. 
T Consensus       188 ~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~-  258 (347)
T 4fmz_A          188 QIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI-  258 (347)
T ss_dssp             CCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred             ccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC-
Confidence            444 2222  2224445555555554443222  444445555555555444 2332  23344555555555444332 


Q ss_pred             cccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCC
Q 040184          242 FSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLN  321 (699)
Q Consensus       242 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  321 (699)
                       ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..|  +..++
T Consensus       259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~  333 (347)
T 4fmz_A          259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS  333 (347)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred             -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence             2344444455555555444432  234444445555555444444444444444444455554444443333  34444


Q ss_pred             CCcEEEcccccC
Q 040184          322 YLQILDLSENNI  333 (699)
Q Consensus       322 ~L~~L~l~~n~i  333 (699)
                      +|+.|++++|.+
T Consensus       334 ~L~~L~l~~N~i  345 (347)
T 4fmz_A          334 KMDSADFANQVI  345 (347)
T ss_dssp             TCSEESSSCC--
T ss_pred             ccceeehhhhcc
Confidence            444444444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.3e-32  Score=290.48  Aligned_cols=333  Identities=20%  Similarity=0.214  Sum_probs=256.2

Q ss_pred             CCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcE
Q 040184          150 HWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF  229 (699)
Q Consensus       150 l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  229 (699)
                      +++++.|+++++.++ .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .++...+..+++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence            467788888888776 677777777888999999999988777778888999999999999888 555555567889999


Q ss_pred             EEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcc
Q 040184          230 LVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHL  309 (699)
Q Consensus       230 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  309 (699)
                      |++++|.+....+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++++.   .+..+++|+.|++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            99999988866666678899999999999999887788899999999999999998754   256678999999999987


Q ss_pred             cccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhh
Q 040184          310 QGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWI  389 (699)
Q Consensus       310 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~  389 (699)
                      .+     +...++|+.|++++|.+.....                           ...++|+.|++++|.+++.  .++
T Consensus       199 ~~-----~~~~~~L~~L~l~~n~l~~~~~---------------------------~~~~~L~~L~l~~n~l~~~--~~l  244 (390)
T 3o6n_A          199 ST-----LAIPIAVEELDASHNSINVVRG---------------------------PVNVELTILKLQHNNLTDT--AWL  244 (390)
T ss_dssp             SE-----EECCSSCSEEECCSSCCCEEEC---------------------------CCCSSCCEEECCSSCCCCC--GGG
T ss_pred             cc-----cCCCCcceEEECCCCeeeeccc---------------------------cccccccEEECCCCCCccc--HHH
Confidence            64     2344578888888887763211                           1135677888888887753  567


Q ss_pred             hcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCC
Q 040184          390 ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSS  469 (699)
Q Consensus       390 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (699)
                      ..+++|++|++++|++.+..+..+..+++|+.|++++|++++. |..+                                
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~--------------------------------  291 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYG--------------------------------  291 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSS--------------------------------
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-Cccc--------------------------------
Confidence            7888888888888888877788888888899999988888643 2111                                


Q ss_pred             cccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeC
Q 040184          470 TMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDI  549 (699)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  549 (699)
                                           ..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..   +..+++|+.|++
T Consensus       292 ---------------------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l  346 (390)
T 3o6n_A          292 ---------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL  346 (390)
T ss_dssp             ---------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred             ---------------------CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEc
Confidence                                 12468899999999998 56777889999999999999998653   678899999999


Q ss_pred             CCCcccccCCcccccCCCCCeeecccCcCccc
Q 040184          550 SYNNLNGKIPPQLVELNALAFFSVAHNNLSGK  581 (699)
Q Consensus       550 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  581 (699)
                      ++|++.......  -+..+....+..+...+.
T Consensus       347 ~~N~~~~~~~~~--~~~~~~~~~~~~~~~~c~  376 (390)
T 3o6n_A          347 SHNDWDCNSLRA--LFRNVARPAVDDADQHCK  376 (390)
T ss_dssp             CSSCEEHHHHHH--HTTTCCTTTBCCCCSCCC
T ss_pred             CCCCccchhHHH--HHHHHHhhcccccCceec
Confidence            999998643222  223344444445544433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.6e-33  Score=285.60  Aligned_cols=259  Identities=31%  Similarity=0.499  Sum_probs=206.7

Q ss_pred             CCceEECCCCcCcC--cCchhhhccCCCcEEeccC-CcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEE
Q 040184          274 HLEGLYMSDNNLYG--NIPAWLGNLSSLYDIMMAS-NHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVH  350 (699)
Q Consensus       274 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~  350 (699)
                      +++.|++++|.+.+  .+|..+.++++|+.|++++ |.+.+.+|..+..+++|++|++++|.+.+..|            
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p------------  118 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP------------  118 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC------------
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC------------
Confidence            55666666666665  5566666666666666663 66666666666666667766666666653322            


Q ss_pred             ccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCC-CCCEEECcCCcc
Q 040184          351 LSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLK-QLRLIDLSNNNI  429 (699)
Q Consensus       351 l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~ls~n~i  429 (699)
                                 .. +..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..++ +|+.|++++|++
T Consensus       119 -----------~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          119 -----------DF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             -----------GG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             -----------HH-HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence                       22 56667777777777777777777788888888888888888877888888877 888888888888


Q ss_pred             cccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCcc
Q 040184          430 FGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE  509 (699)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  509 (699)
                      ++.+|..+..+                                                      .|+.|++++|.+++.
T Consensus       187 ~~~~~~~~~~l------------------------------------------------------~L~~L~Ls~N~l~~~  212 (313)
T 1ogq_A          187 TGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEGD  212 (313)
T ss_dssp             EEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEEC
T ss_pred             eccCChHHhCC------------------------------------------------------cccEEECcCCcccCc
Confidence            87777665432                                                      378899999999888


Q ss_pred             CCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCC
Q 040184          510 IPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQF  589 (699)
Q Consensus       510 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  589 (699)
                      .|..|..+++|++|+|++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+
T Consensus       213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l  290 (313)
T 1ogq_A          213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence            899999999999999999999977665 888999999999999999999999999999999999999999999987 689


Q ss_pred             CCCCCCccCCCCCCCCCCCCCCC
Q 040184          590 TTFKEDSYEGNPLLCGKPLPDCD  612 (699)
Q Consensus       590 ~~l~~~~~~~Np~~C~~~~~~c~  612 (699)
                      ++++.+++.+||++|+.|++.|.
T Consensus       291 ~~L~~l~l~~N~~lc~~p~~~C~  313 (313)
T 1ogq_A          291 QRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCCC
T ss_pred             cccChHHhcCCCCccCCCCCCCC
Confidence            99999999999999998887773

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.7e-32  Score=282.46  Aligned_cols=304  Identities=22%  Similarity=0.314  Sum_probs=189.0

Q ss_pred             CCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEE
Q 040184          175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSL  254 (699)
Q Consensus       175 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  254 (699)
                      +++|++|+++++.+.. ++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+...  ..+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            4566666666666653 22 3566666666666666665 4444  34566666666666665432  245556666666


Q ss_pred             EccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCc
Q 040184          255 HLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS  334 (699)
Q Consensus       255 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~  334 (699)
                      ++++|.+.+..+  +..+++|+.|++++|......+ .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.
T Consensus       116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            666666653322  5556666666666664432222 25555556666665555543322  445555555555555443


Q ss_pred             ccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccC
Q 040184          335 GSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC  414 (699)
Q Consensus       335 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  414 (699)
                                             +..+   +..+++|+.+++++|.+++..+  +..+++|++|++++|++++..+  +.
T Consensus       191 -----------------------~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~  240 (347)
T 4fmz_A          191 -----------------------DISP---LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA  240 (347)
T ss_dssp             -----------------------CCGG---GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             -----------------------cccc---ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence                                   2111   5566777777777777765444  6677778888888877774333  77


Q ss_pred             CCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCC
Q 040184          415 RLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLN  494 (699)
Q Consensus       415 ~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  494 (699)
                      .+++|++|++++|.+++. + .+                                                     ..++
T Consensus       241 ~l~~L~~L~l~~n~l~~~-~-~~-----------------------------------------------------~~l~  265 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISDI-N-AV-----------------------------------------------------KDLT  265 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC-G-GG-----------------------------------------------------TTCT
T ss_pred             cCCCCCEEECCCCccCCC-h-hH-----------------------------------------------------hcCC
Confidence            777788888887777532 1 11                                                     1245


Q ss_pred             cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecc
Q 040184          495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA  574 (699)
Q Consensus       495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  574 (699)
                      +|+.|++++|.+++.  ..+..+++|++|++++|++++..|..++.+++|++|++++|++++..|  +..+++|++|+++
T Consensus       266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  341 (347)
T 4fmz_A          266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA  341 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred             CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence            777777777777753  457777888888888888877777777888888888888888875544  6777888888888


Q ss_pred             cCcCc
Q 040184          575 HNNLS  579 (699)
Q Consensus       575 ~N~l~  579 (699)
                      +|+++
T Consensus       342 ~N~i~  346 (347)
T 4fmz_A          342 NQVIK  346 (347)
T ss_dssp             CC---
T ss_pred             hhccc
Confidence            88764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.7e-31  Score=297.49  Aligned_cols=311  Identities=20%  Similarity=0.240  Sum_probs=251.3

Q ss_pred             CCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcE
Q 040184          150 HWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF  229 (699)
Q Consensus       150 l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  229 (699)
                      +.+++.+++++|.+. .+|..++..+++|++|+|++|.+.+..|..|..+++|++|++++|.++ .++...+..+++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence            456777888887776 677777777889999999999998888888999999999999999988 566666667899999


Q ss_pred             EEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcc
Q 040184          230 LVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHL  309 (699)
Q Consensus       230 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  309 (699)
                      |++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..   +..+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence            999999988776677788999999999999999888888999999999999999988643   55678999999999987


Q ss_pred             cccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhh
Q 040184          310 QGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWI  389 (699)
Q Consensus       310 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~  389 (699)
                      .+     +...++|+.|++++|.+....+.                           ..++|+.|++++|.+++  +.++
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~---------------------------~~~~L~~L~L~~n~l~~--~~~l  250 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVRGP---------------------------VNVELTILKLQHNNLTD--TAWL  250 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEECS---------------------------CCSCCCEEECCSSCCCC--CGGG
T ss_pred             cc-----ccCCchhheeeccCCcccccccc---------------------------cCCCCCEEECCCCCCCC--Chhh
Confidence            64     33456788888888887632211                           12467888888888775  3667


Q ss_pred             hcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCC
Q 040184          390 ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSS  469 (699)
Q Consensus       390 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (699)
                      ..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++. |..+                                
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~--------------------------------  297 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYG--------------------------------  297 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSS--------------------------------
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Cccc--------------------------------
Confidence            8888888888888888888788888888999999998888753 2211                                


Q ss_pred             cccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeC
Q 040184          470 TMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDI  549 (699)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  549 (699)
                                           ..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++..   +..+++|+.|++
T Consensus       298 ---------------------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l  352 (597)
T 3oja_B          298 ---------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL  352 (597)
T ss_dssp             ---------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred             ---------------------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence                                 12468999999999998 57778899999999999999998653   667889999999


Q ss_pred             CCCccccc
Q 040184          550 SYNNLNGK  557 (699)
Q Consensus       550 s~N~l~~~  557 (699)
                      ++|.+.+.
T Consensus       353 ~~N~~~~~  360 (597)
T 3oja_B          353 SHNDWDCN  360 (597)
T ss_dssp             CSSCEEHH
T ss_pred             eCCCCCCh
Confidence            99999864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=4.4e-34  Score=309.32  Aligned_cols=185  Identities=18%  Similarity=0.167  Sum_probs=126.7

Q ss_pred             CCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccc----cCCccccCCCCCCEEEccCCcCCCccchHHhhcCC-
Q 040184          151 WHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG----SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCF-  225 (699)
Q Consensus       151 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-  225 (699)
                      ++|++|++++|+++......++..+++|++|++++|.+++    .++..+..+++|++|++++|.+++..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4677788888877644444545667888888888888764    34566777888888888888887544555555565 


Q ss_pred             ---CCcEEEccCCcCCc----cCcccccCCCCCcEEEccCCcCCccCCccC-----cCCCCCceEECCCCcCcCcC----
Q 040184          226 ---NLEFLVLSENSLLG----QLFSKKNYLRKLVSLHLDANYFTGEIPKSL-----SNCSHLEGLYMSDNNLYGNI----  289 (699)
Q Consensus       226 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~----  289 (699)
                         +|++|++++|.+..    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|++++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888888763    446677778888888888888764333222     23557888888888777533    


Q ss_pred             chhhhccCCCcEEeccCCcccccCCcccc-----CCCCCcEEEcccccCcc
Q 040184          290 PAWLGNLSSLYDIMMASNHLQGPIPLEFC-----QLNYLQILDLSENNISG  335 (699)
Q Consensus       290 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~i~~  335 (699)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+..
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence            44556677888888888877654333332     24577777777776653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=4.4e-34  Score=309.30  Aligned_cols=308  Identities=19%  Similarity=0.149  Sum_probs=154.0

Q ss_pred             cccEEEccCCcCccccch-hcCCCCCCCEEEcccCccccc----cchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCC
Q 040184           79 QLESVALSGSGIHATFPK-FLYNQHDLEYVDFSDSNLKGE----FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHL  153 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~~-~l~~~~~L~~L~ls~n~~~~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  153 (699)
                      +|++|+++++.++..... .+..+++|++|++++|.+++.    ++.. +..+++|++|++++|.+.+            
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~------------   70 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGD------------   70 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHH------------
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCCh------------
Confidence            566777777666544332 255666666666666666532    2222 3455566666666555543            


Q ss_pred             CEEEccCccCCccCchhhhhcCC----CCcEEeCcCCcccc----cCCccccCCCCCCEEEccCCcCCCccchHHhh---
Q 040184          154 DTLYVSKNFFQGNIPLEIGVYFP----RLVYLNLSRNDFNG----SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAM---  222 (699)
Q Consensus       154 ~~L~l~~n~i~~~~~~~~~~~~~----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---  222 (699)
                                  ..+..++..++    +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+..   
T Consensus        71 ------------~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  138 (461)
T 1z7x_W           71 ------------VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL  138 (461)
T ss_dssp             ------------HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             ------------HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence                        22333333333    46666666666653    34566666777777777777665333332221   


Q ss_pred             -cCCCCcEEEccCCcCCccC----cccccCCCCCcEEEccCCcCCccCCccCc-----CCCCCceEECCCCcCcCc----
Q 040184          223 -SCFNLEFLVLSENSLLGQL----FSKKNYLRKLVSLHLDANYFTGEIPKSLS-----NCSHLEGLYMSDNNLYGN----  288 (699)
Q Consensus       223 -~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----  288 (699)
                       ..++|++|++++|.+.+..    +..+..+++|++|++++|.+.+..+..+.     ..++|+.|++++|.+++.    
T Consensus       139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  218 (461)
T 1z7x_W          139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD  218 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred             cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence             2345666666666554422    33344455666666666655433222222     234566666666655542    


Q ss_pred             CchhhhccCCCcEEeccCCcccccC-----CccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcc
Q 040184          289 IPAWLGNLSSLYDIMMASNHLQGPI-----PLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYG  363 (699)
Q Consensus       289 ~~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  363 (699)
                      ++..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.++....                   ..++. 
T Consensus       219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~-  278 (461)
T 1z7x_W          219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCR-  278 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHH-
T ss_pred             HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHH-
Confidence            2344445555555555555544321     1111234445555555444432100                   00111 


Q ss_pred             cccCCCCccEEECCCCCCCCCcChhhhc-----CCCCCEEEcccCcCCCC----CCcccCCCCCCCEEECcCCcccc
Q 040184          364 TFFNRSSIVTLDLSYNSFSGYIPYWIER-----LTYLRYLILANNNLEGE----VPIQLCRLKQLRLIDLSNNNIFG  431 (699)
Q Consensus       364 ~~~~~~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~i~~  431 (699)
                      .+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++.    ++..+..+++|++|++++|.+++
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence            1444555666666666555433333322     14566666666665533    23334445566666666665543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=6.7e-30  Score=263.20  Aligned_cols=270  Identities=21%  Similarity=0.263  Sum_probs=130.2

Q ss_pred             CCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEecc
Q 040184          226 NLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMA  305 (699)
Q Consensus       226 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  305 (699)
                      ++++|++++|.+.+..+..+..+++|++|++++|.+++..|.+|+.+++|++|++++|+++. +|..+.  ++|+.|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECC
Confidence            34444444444433333334444444444444444443334444444444444444444432 222221  344444444


Q ss_pred             CCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCc
Q 040184          306 SNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI  385 (699)
Q Consensus       306 ~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~  385 (699)
                      +|.+.+..+..+..+++|+.|++++|.+...                     + .....+..+++|++|++++|.++.. 
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~-~~~~~~~~l~~L~~L~l~~n~l~~l-  186 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------G-IENGAFQGMKKLSYIRIADTNITTI-  186 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------G-BCTTGGGGCTTCCEEECCSSCCCSC-
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCcc---------------------C-cChhhccCCCCcCEEECCCCccccC-
Confidence            4444443333444444444444444444310                     0 0011134444444444444444432 


Q ss_pred             ChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccccccccccc
Q 040184          386 PYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYS  465 (699)
Q Consensus       386 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (699)
                      |..+.  ++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..                          
T Consensus       187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------  238 (330)
T 1xku_A          187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--------------------------  238 (330)
T ss_dssp             CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--------------------------
T ss_pred             Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC--------------------------
Confidence            21111  45555555555555554555555555666666655555444433322                          


Q ss_pred             CCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccC-----
Q 040184          466 AGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSN-----  540 (699)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----  540 (699)
                                                 +++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|..     
T Consensus       239 ---------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~  290 (330)
T 1xku_A          239 ---------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT  290 (330)
T ss_dssp             ---------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred             ---------------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccc
Confidence                                       235555666666555 45555666666777777777766655555543     


Q ss_pred             -CCCCCEEeCCCCcccc--cCCcccccCCCCCeeecccCc
Q 040184          541 -LNQVESLDISYNNLNG--KIPPQLVELNALAFFSVAHNN  577 (699)
Q Consensus       541 -l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~l~~N~  577 (699)
                       .+.|+.|++++|.+..  ..|..+..+++++.+++++|+
T Consensus       291 ~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence             2566677777776653  445666667777777777663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3e-30  Score=265.92  Aligned_cols=288  Identities=22%  Similarity=0.258  Sum_probs=156.7

Q ss_pred             CCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEEC
Q 040184          201 SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYM  280 (699)
Q Consensus       201 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  280 (699)
                      +++.++++++.++ .+|..+   .+++++|++++|.+.+..+..+..+++|++|++++|.+++..|.+|..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            3555555555554 555433   245555555555555554555555666666666666665555555666666666666


Q ss_pred             CCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcc--cCCCCCCCCCccEEEccCccccc
Q 040184          281 SDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG--SLPSCSSHSSITQVHLSKNMLYG  358 (699)
Q Consensus       281 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~~~L~~L~l~~n~~~~  358 (699)
                      ++|+++ .+|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+..  ..+..                  
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------  168 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA------------------  168 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS------------------
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc------------------
Confidence            666655 2333222  556666666666655545555666666666666665542  11111                  


Q ss_pred             cCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccc
Q 040184          359 PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLD  438 (699)
Q Consensus       359 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~  438 (699)
                            +..+ +|+.|++++|++++. |..+.  ++|++|++++|++++..+..+..+++|++|++++|++++..+..+.
T Consensus       169 ------~~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          169 ------FDGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             ------SCSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             ------ccCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence                  2223 444555555554432 22111  4555555555555555555555566666666666665544433332


Q ss_pred             cCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccC
Q 040184          439 NTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLT  518 (699)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  518 (699)
                      .                                                     +++|+.|++++|+++ .+|..+..++
T Consensus       239 ~-----------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~  264 (332)
T 2ft3_A          239 F-----------------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLK  264 (332)
T ss_dssp             G-----------------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred             C-----------------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCc
Confidence            2                                                     235555666666655 4555566666


Q ss_pred             ccCeEEccCCcCcccCCccccC------CCCCCEEeCCCCccc--ccCCcccccCCCCCeeecccCc
Q 040184          519 RIRALNLSHNNLTGVIPVTFSN------LNQVESLDISYNNLN--GKIPPQLVELNALAFFSVAHNN  577 (699)
Q Consensus       519 ~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~l~~N~  577 (699)
                      +|++|++++|++++..+..|..      .++|+.|++++|.+.  +..|..+..+++|+.+++++|+
T Consensus       265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            6777777777766655555544      245667777777665  4555666667777777776663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=6.5e-30  Score=263.41  Aligned_cols=252  Identities=26%  Similarity=0.281  Sum_probs=147.7

Q ss_pred             CCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEE
Q 040184          152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLV  231 (699)
Q Consensus       152 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  231 (699)
                      +++.++++++.++ .+|..++   +++++|++++|.+.+..|..|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence            5666777766665 5565443   36666666666666555566666666666666666666 33223334556666666


Q ss_pred             ccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccc
Q 040184          232 LSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG  311 (699)
Q Consensus       232 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  311 (699)
                      +++|.+.. +|..+.  ++|++|++++|.+++..+..|..+++|+.|++++|.++.                      .+
T Consensus       109 L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~  163 (332)
T 2ft3_A          109 ISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SG  163 (332)
T ss_dssp             CCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GG
T ss_pred             CCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CC
Confidence            66665542 222221  455555555555554444445555555555555555431                      01


Q ss_pred             cCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhc
Q 040184          312 PIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIER  391 (699)
Q Consensus       312 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  391 (699)
                      ..+..+..+ +|+.|++++|.+.+. |... .++|++|++++|.+.+..+. .+..+++|+.|++++|++++..+..+..
T Consensus       164 ~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~-~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~  239 (332)
T 2ft3_A          164 FEPGAFDGL-KLNYLRISEAKLTGI-PKDL-PETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSLSF  239 (332)
T ss_dssp             SCTTSSCSC-CCSCCBCCSSBCSSC-CSSS-CSSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred             CCcccccCC-ccCEEECcCCCCCcc-Cccc-cCCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence            333344444 555555555554431 1111 13444444444444333322 2667778888888888888777777888


Q ss_pred             CCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccc
Q 040184          392 LTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLD  438 (699)
Q Consensus       392 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~  438 (699)
                      +++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+.
T Consensus       240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred             CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence            888888888888887 5666677788888888888888765554443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3e-29  Score=258.28  Aligned_cols=250  Identities=23%  Similarity=0.280  Sum_probs=149.3

Q ss_pred             CCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEE
Q 040184          152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLV  231 (699)
Q Consensus       152 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  231 (699)
                      +++.++++++.++ .+|..+.   +++++|++++|.+++..+..|.++++|++|++++|.++                  
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------   89 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS------------------   89 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred             CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC------------------
Confidence            5666666666655 4554332   35566666666665544445555555555555555555                  


Q ss_pred             ccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccc
Q 040184          232 LSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG  311 (699)
Q Consensus       232 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  311 (699)
                             +..|..+..+++|++|++++|.++ .+|..+.  ++|+.|++++|++.+..+..+.++++|+.|++++|.+..
T Consensus        90 -------~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  159 (330)
T 1xku_A           90 -------KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  159 (330)
T ss_dssp             -------CBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             -------eeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence                   333444444444444444444444 2222222  455555555555555555555555666666666655532


Q ss_pred             --cCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhh
Q 040184          312 --PIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWI  389 (699)
Q Consensus       312 --~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~  389 (699)
                        ..+..+..+++|++|++++|.+... |... .++|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..+..+
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~-~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~  236 (330)
T 1xku_A          160 SGIENGAFQGMKKLSYIRIADTNITTI-PQGL-PPSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSL  236 (330)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCCSC-CSSC-CTTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             cCcChhhccCCCCcCEEECCCCccccC-Cccc-cccCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCceeChhhc
Confidence              4455566666666666666666532 2211 145666666666654443333 7777888888888888877767777


Q ss_pred             hcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCcc
Q 040184          390 ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCL  437 (699)
Q Consensus       390 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~  437 (699)
                      ..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+
T Consensus       237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            88888888888888887 666677778888888888888775555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=5.5e-31  Score=268.41  Aligned_cols=251  Identities=27%  Similarity=0.438  Sum_probs=150.0

Q ss_pred             CCcEEEccCCcCCc--cCCccCcCCCCCceEECCC-CcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEE
Q 040184          250 KLVSLHLDANYFTG--EIPKSLSNCSHLEGLYMSD-NNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQIL  326 (699)
Q Consensus       250 ~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  326 (699)
                      ++++|++++|.+.+  .+|..+..+++|++|++++ |.+.+..|..|.++++|++|++++|.+.+..|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            34444444444444  4444455555555555552 44444445555555555555555555554455555555555555


Q ss_pred             EcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCC-CCCEEEcccCcC
Q 040184          327 DLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLT-YLRYLILANNNL  405 (699)
Q Consensus       327 ~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l  405 (699)
                      ++++|.+.+..|.                       . +..+++|++|++++|++++.+|..+..++ +|++|++++|++
T Consensus       131 ~Ls~N~l~~~~p~-----------------------~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          131 DFSYNALSGTLPP-----------------------S-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCCCG-----------------------G-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             eCCCCccCCcCCh-----------------------H-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            5555554432221                       1 33444444444444444444444455544 555555555555


Q ss_pred             CCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeeccee
Q 040184          406 EGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS  485 (699)
Q Consensus       406 ~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (699)
                      ++..|..+..++ |+.|++++|.+++..|..+..                                              
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~----------------------------------------------  219 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS----------------------------------------------  219 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT----------------------------------------------
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhc----------------------------------------------
Confidence            555555555554 566666666555544443322                                              


Q ss_pred             eeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccC
Q 040184          486 FSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVEL  565 (699)
Q Consensus       486 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  565 (699)
                             +++|+.|++++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|.. ..+
T Consensus       220 -------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l  290 (313)
T 1ogq_A          220 -------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             -------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             -------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence                   23566666666666644444 677888999999999998888888999999999999999999888876 788


Q ss_pred             CCCCeeecccCcCcc
Q 040184          566 NALAFFSVAHNNLSG  580 (699)
Q Consensus       566 ~~L~~L~l~~N~l~~  580 (699)
                      ++|+.+++++|+..+
T Consensus       291 ~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          291 QRFDVSAYANNKCLC  305 (313)
T ss_dssp             GGSCGGGTCSSSEEE
T ss_pred             cccChHHhcCCCCcc
Confidence            899999999998443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=2.5e-28  Score=261.65  Aligned_cols=251  Identities=23%  Similarity=0.267  Sum_probs=165.2

Q ss_pred             CcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEccc
Q 040184          251 LVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSE  330 (699)
Q Consensus       251 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  330 (699)
                      .+.++.++..++ .+|..+.  ++++.|++++|++.+..+..|.++++|+.|++++|.+.+..+..|.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            455666666666 4454443  4667777777777666666666666777777777766665556666666666666666


Q ss_pred             ccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCc-CCCCC
Q 040184          331 NNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNN-LEGEV  409 (699)
Q Consensus       331 n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~  409 (699)
                      |.+.+                        ++...|..+++|++|++++|.++...+..+..+++|++|++++|+ +....
T Consensus       122 n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          122 NRLTT------------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             SCCSS------------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCe------------------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence            66552                        222236667778888888887776666677777778888877743 44344


Q ss_pred             CcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeC
Q 040184          410 PIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYK  489 (699)
Q Consensus       410 ~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (699)
                      +..|..+++|++|++++|.++. +|. +                                                    
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~~-~~~-~----------------------------------------------------  203 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLRE-IPN-L----------------------------------------------------  203 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCSS-CCC-C----------------------------------------------------
T ss_pred             cchhhcccccCeecCCCCcCcc-ccc-c----------------------------------------------------
Confidence            4567777777777777777652 221 1                                                    


Q ss_pred             CCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCC
Q 040184          490 GKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALA  569 (699)
Q Consensus       490 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  569 (699)
                       ..+++|+.|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..+..+++|+
T Consensus       204 -~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          204 -TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             -TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             -CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence             1234677777777777766666777777777777777777766666777777777777777777766666666677777


Q ss_pred             eeecccCcCcccCC
Q 040184          570 FFSVAHNNLSGKIP  583 (699)
Q Consensus       570 ~L~l~~N~l~~~~~  583 (699)
                      .|++++|++.|.+.
T Consensus       283 ~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          283 RIHLHHNPWNCNCD  296 (440)
T ss_dssp             EEECCSSCEECSST
T ss_pred             EEEcCCCCccCCCC
Confidence            77777777666543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=9.2e-31  Score=292.66  Aligned_cols=395  Identities=12%  Similarity=0.049  Sum_probs=196.5

Q ss_pred             CCCCCCEEEcCCCcCcccCCCCCCC-CC-CCCEEEccCcc-CCccCchhhhhcCCCCcEEeCcCCccccc----CCcccc
Q 040184          125 NNTNLNTLVLRNNSLSGPFRMPIQP-HW-HLDTLYVSKNF-FQGNIPLEIGVYFPRLVYLNLSRNDFNGS----IPSSIG  197 (699)
Q Consensus       125 ~l~~L~~L~Ls~n~i~~~~~~~~~~-l~-~L~~L~l~~n~-i~~~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~  197 (699)
                      .+++|++|+|++|.+.+..+..+.. ++ +|++|++++|. ++......+...+++|++|+|++|.+.+.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4555555555555544332222222 12 25555555554 11111112222355666666666655433    222334


Q ss_pred             CCCCCCEEEccCCcCCC----ccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCC---ccCCccCc
Q 040184          198 DMNSLEALDLSHNQLTG----EIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFT---GEIPKSLS  270 (699)
Q Consensus       198 ~l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~  270 (699)
                      .+++|++|++++|.+++    .++ .++..+++|++|++++|.+.+ ++..+..+++|++|+++.....   ...+..+.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHH-HHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            45566666666665541    111 122345666666666655543 3445555666666666542221   12223455


Q ss_pred             CCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCC-ccccCCCCCcEEEcccccCcc-cCCCCC-CCCCcc
Q 040184          271 NCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIP-LEFCQLNYLQILDLSENNISG-SLPSCS-SHSSIT  347 (699)
Q Consensus       271 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~-~~~~~~-~~~~L~  347 (699)
                      .+++|+.|+++++.. ...|..+..+++|++|++++|.+.+... ..+..+++|+.|+++ +.+.. .++... .+++|+
T Consensus       268 ~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred             ccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence            556666666665432 2445555556666666666665443222 224556666666666 22221 111111 344555


Q ss_pred             EEEccC-----------ccccccCCcccccCCCCccEEECCCCCCCCCcChhhhc-CCCCCEEEcc----cCcCCCC---
Q 040184          348 QVHLSK-----------NMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIER-LTYLRYLILA----NNNLEGE---  408 (699)
Q Consensus       348 ~L~l~~-----------n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~----~n~l~~~---  408 (699)
                      +|++++           +.+++.........+++|++|+++.+.+++..+..+.. +++|+.|+++    .|.+++.   
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~  425 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD  425 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence            555552           23322211111334667777777666666555555544 6777777775    4455532   


Q ss_pred             --CCcccCCCCCCCEEECcCCc--ccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecce
Q 040184          409 --VPIQLCRLKQLRLIDLSNNN--IFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEI  484 (699)
Q Consensus       409 --~~~~~~~l~~L~~L~ls~n~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (699)
                        ++..+..+++|++|++++|.  +++..+..+.                                              
T Consensus       426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~----------------------------------------------  459 (592)
T 3ogk_B          426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG----------------------------------------------  459 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH----------------------------------------------
T ss_pred             HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH----------------------------------------------
Confidence              22224456777777776443  3322111111                                              


Q ss_pred             eeeeCCCCCCcccEEEccCCccCc-cCCccccccCccCeEEccCCcCccc-CCccccCCCCCCEEeCCCCcccccCCccc
Q 040184          485 SFSYKGKPLNKMYGVDLSCNKLTG-EIPPQISKLTRIRALNLSHNNLTGV-IPVTFSNLNQVESLDISYNNLNGKIPPQL  562 (699)
Q Consensus       485 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  562 (699)
                            ..+++|+.|++++|++++ .++..+..+++|++|+|++|.+++. ++..+..+++|++|++++|+++......+
T Consensus       460 ------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l  533 (592)
T 3ogk_B          460 ------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM  533 (592)
T ss_dssp             ------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred             ------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence                  113467777777777664 2333446667777777777776533 22333456777777777777664433222


Q ss_pred             -ccCCCCCeeeccc
Q 040184          563 -VELNALAFFSVAH  575 (699)
Q Consensus       563 -~~l~~L~~L~l~~  575 (699)
                       ..+|.+....+..
T Consensus       534 ~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          534 QMARPYWNIELIPS  547 (592)
T ss_dssp             GGCCTTEEEEEECC
T ss_pred             HHhCCCcEEEEecC
Confidence             2445555444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.8e-28  Score=253.48  Aligned_cols=205  Identities=21%  Similarity=0.171  Sum_probs=129.1

Q ss_pred             CCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceE
Q 040184          199 MNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGL  278 (699)
Q Consensus       199 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  278 (699)
                      |+.....+.+++.++ .+|..+   .++|++|++++|.+.+..+..+.++++|++|++++|.+++..+.+|.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            444455666777776 666654   2467777777777766655567777777777777777776666777777888888


Q ss_pred             ECCCCcCcCcCchhhhccCCCcEEeccCCcccccCC-ccccCCCCCcEEEccccc-CcccCCCCCCCCCccEEEccCccc
Q 040184          279 YMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIP-LEFCQLNYLQILDLSENN-ISGSLPSCSSHSSITQVHLSKNML  356 (699)
Q Consensus       279 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~L~~L~l~~n~~  356 (699)
                      ++++|++++..+..|.++++|++|++++|++.+..+ ..+..+++|++|++++|. +....+.                 
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----------------  168 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-----------------  168 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-----------------
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH-----------------
Confidence            888887776555557777778888887777774433 366777777777777773 4322222                 


Q ss_pred             cccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccc
Q 040184          357 YGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFG  431 (699)
Q Consensus       357 ~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~  431 (699)
                             .+..+++|++|++++|.+++..+..+..+++|++|++++|++.......+..+++|+.|++++|.+++
T Consensus       169 -------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          169 -------DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             -------TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred             -------HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence                   24445555555555555555555555555555556665555543222223345556666666665554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=7.7e-28  Score=258.87  Aligned_cols=250  Identities=21%  Similarity=0.230  Sum_probs=142.4

Q ss_pred             CCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCC-CCCCccEEEcc
Q 040184          274 HLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS-SHSSITQVHLS  352 (699)
Q Consensus       274 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~  352 (699)
                      ....++.++..++ .+|..+.  ++++.|++++|.+.+..+..|.++++|+.|++++|.+.+..+..+ .+++|+.|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3567788877776 4554443  578888888888888778888888888888888888876554443 45566666666


Q ss_pred             CccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccC-cCCCCCCcccCCCCCCCEEECcCCcccc
Q 040184          353 KNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANN-NLEGEVPIQLCRLKQLRLIDLSNNNIFG  431 (699)
Q Consensus       353 ~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~n~i~~  431 (699)
                      +|.+.+ ++...|..+++|++|++++|.++...+..+..+++|++|++++| .+....+..|..+++|++|++++|.+++
T Consensus       132 ~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          132 DNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             SSCCSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCcCCc-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            665543 22223555555555666555555544445555555555555553 2332333345555555555555555542


Q ss_pred             cCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCC
Q 040184          432 QIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP  511 (699)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  511 (699)
                      . |. +                                                     ..+++|+.|++++|.+++..|
T Consensus       211 ~-~~-~-----------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~  235 (452)
T 3zyi_A          211 M-PN-L-----------------------------------------------------TPLVGLEELEMSGNHFPEIRP  235 (452)
T ss_dssp             C-CC-C-----------------------------------------------------TTCTTCCEEECTTSCCSEECG
T ss_pred             c-cc-c-----------------------------------------------------cccccccEEECcCCcCcccCc
Confidence            1 11 0                                                     112345555555555555545


Q ss_pred             ccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccC
Q 040184          512 PQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKI  582 (699)
Q Consensus       512 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  582 (699)
                      ..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.+
T Consensus       236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence            55555555555555555555555555555555555555555555444444455555555555555554443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=8.4e-28  Score=244.72  Aligned_cols=250  Identities=21%  Similarity=0.274  Sum_probs=135.3

Q ss_pred             cEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCc--CchhhhccCCCcEEecc
Q 040184          228 EFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGN--IPAWLGNLSSLYDIMMA  305 (699)
Q Consensus       228 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~  305 (699)
                      +.++.+++.+.. +|..+  .+++++|++++|.++...+..|..+++|+.|++++|+++..  .+..+..+++|+.|+++
T Consensus        10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            456666666543 33322  35677777777777654444566677777777777766532  24455556666666666


Q ss_pred             CCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCc
Q 040184          306 SNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI  385 (699)
Q Consensus       306 ~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~  385 (699)
                      +|.+. .+|..+..+++|++|++++|.+.+..+                       ...+..+++|++|++++|.+.+..
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECS
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccc
Confidence            66655 234445555555555555555542211                       112444555555555555555444


Q ss_pred             ChhhhcCCCCCEEEcccCcCCC-CCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccc
Q 040184          386 PYWIERLTYLRYLILANNNLEG-EVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTY  464 (699)
Q Consensus       386 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (699)
                      +..+..+++|++|++++|++.+ ..|..+..+++|++|++++|.+                                   
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l-----------------------------------  187 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-----------------------------------  187 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-----------------------------------
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc-----------------------------------
Confidence            4445555555555555555543 2344444455555555555544                                   


Q ss_pred             cCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCC
Q 040184          465 SAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV  544 (699)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  544 (699)
                                                                ++..|..+..+++|++|+|++|++++..+..+..+++|
T Consensus       188 ------------------------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  225 (306)
T 2z66_A          188 ------------------------------------------EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL  225 (306)
T ss_dssp             ------------------------------------------CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred             ------------------------------------------CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence                                                      44444445555555555555555555544455555555


Q ss_pred             CEEeCCCCcccccCCcccccCC-CCCeeecccCcCccc
Q 040184          545 ESLDISYNNLNGKIPPQLVELN-ALAFFSVAHNNLSGK  581 (699)
Q Consensus       545 ~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~  581 (699)
                      ++|++++|++++..|..+..++ +|++|++++|++++.
T Consensus       226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            5555555555555555555553 555555555555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.6e-28  Score=251.22  Aligned_cols=280  Identities=19%  Similarity=0.162  Sum_probs=159.3

Q ss_pred             CCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEe
Q 040184          224 CFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIM  303 (699)
Q Consensus       224 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  303 (699)
                      |+.....+.+++.+.. +|..+  .++|++|++++|.+++..+..|.++++|+.|++++|++++..+..|.++++|++|+
T Consensus        30 C~~~~~c~~~~~~l~~-iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLNS-IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCSS-CCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCccc-ccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            4445556666666653 33333  24666666666666655555666666666666666666655555566666666666


Q ss_pred             ccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCc-ccccCCCCccEEECCCC-CC
Q 040184          304 MASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRY-GTFFNRSSIVTLDLSYN-SF  381 (699)
Q Consensus       304 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~Ls~n-~i  381 (699)
                      +++|++.+..+..+..+++|++|++++|.+.+                        ++. ..+..+++|++|++++| .+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT------------------------LGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS------------------------SCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcc------------------------cCchhhhccCCCCcEEECCCCccc
Confidence            66666664444445566666666666665542                        111 22556667777777776 35


Q ss_pred             CCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccccccc
Q 040184          382 SGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVR  461 (699)
Q Consensus       382 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (699)
                      +...+..+.++++|++|++++|++.+..+..+..+++|++|++++|.+....+..+.                       
T Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----------------------  219 (353)
T 2z80_A          163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD-----------------------  219 (353)
T ss_dssp             CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH-----------------------
T ss_pred             cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh-----------------------
Confidence            555556666677777777777777666666666677777777776665421111110                       


Q ss_pred             ccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCcccc---ccCccCeEEccCCcCcc----cC
Q 040184          462 STYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIS---KLTRIRALNLSHNNLTG----VI  534 (699)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~----~~  534 (699)
                                                    .+++|+.|++++|.+++..+..+.   ..+.++.++++++.+++    .+
T Consensus       220 ------------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l  269 (353)
T 2z80_A          220 ------------------------------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV  269 (353)
T ss_dssp             ------------------------------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred             ------------------------------hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence                                          124666666666666654433322   24455555665555543    23


Q ss_pred             CccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCC
Q 040184          535 PVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP  583 (699)
Q Consensus       535 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~  583 (699)
                      |..+..+++|++|++++|+++...+..+..+++|++|++++|++.+.+|
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            4455556666666666666663222224556666666666666655444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=6.9e-30  Score=285.59  Aligned_cols=411  Identities=13%  Similarity=0.042  Sum_probs=292.9

Q ss_pred             chhhhhCCCCCCEEEcCCCcCc---ccCCCCCC------------CCCCCCEEEccCccCCccCchhhhhcCCC-CcEEe
Q 040184          119 LNWLLENNTNLNTLVLRNNSLS---GPFRMPIQ------------PHWHLDTLYVSKNFFQGNIPLEIGVYFPR-LVYLN  182 (699)
Q Consensus       119 ~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~------------~l~~L~~L~l~~n~i~~~~~~~~~~~~~~-L~~L~  182 (699)
                      |..++..+++|++|+++++...   +..|..++            .+++|++|++++|.+++..+..+...+++ |++|+
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK  144 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence            4444556666666666554221   12222222            67899999999999886666666665556 99999


Q ss_pred             CcCCc-ccc-cCCccccCCCCCCEEEccCCcCCCccc---hHHhhcCCCCcEEEccCCcCC----ccCcccccCCCCCcE
Q 040184          183 LSRND-FNG-SIPSSIGDMNSLEALDLSHNQLTGEIP---EHLAMSCFNLEFLVLSENSLL----GQLFSKKNYLRKLVS  253 (699)
Q Consensus       183 L~~n~-i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~  253 (699)
                      +++|. +.. ..+.....+++|++|++++|.+++.-.   ..+...+++|++|++++|.+.    +.++..+..+++|++
T Consensus       145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~  224 (592)
T 3ogk_B          145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS  224 (592)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred             CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence            99987 221 122334578999999999998864421   123457999999999999986    334455677899999


Q ss_pred             EEccCCcCCccCCccCcCCCCCceEECCCCcCc---CcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEccc
Q 040184          254 LHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY---GNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSE  330 (699)
Q Consensus       254 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  330 (699)
                      |++++|.+.+ .+..+..+++|+.|+++.....   ...+..+..+++|+.|++.++... .+|..+..+++|++|++++
T Consensus       225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~  302 (592)
T 3ogk_B          225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLY  302 (592)
T ss_dssp             EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETT
T ss_pred             EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCC
Confidence            9999999885 6678889999999999864322   233456677889999999886433 5677788899999999999


Q ss_pred             ccCcccCCC--CCCCCCccEEEccCccccccCCcccccCCCCccEEECCC-----------CCCCCCc-ChhhhcCCCCC
Q 040184          331 NNISGSLPS--CSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSY-----------NSFSGYI-PYWIERLTYLR  396 (699)
Q Consensus       331 n~i~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~-----------n~i~~~~-~~~~~~l~~L~  396 (699)
                      |.+......  ...+++|+.|+++ +.+...........+++|++|++++           +.+++.. +.....+++|+
T Consensus       303 ~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~  381 (592)
T 3ogk_B          303 ALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE  381 (592)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred             CcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence            997643321  2378899999998 4443332233246789999999993           5665432 33356699999


Q ss_pred             EEEcccCcCCCCCCcccCC-CCCCCEEECc----CCcccccCCC-ccccCCccCCCCCCCCCcccccccccccccCCCCc
Q 040184          397 YLILANNNLEGEVPIQLCR-LKQLRLIDLS----NNNIFGQIPG-CLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSST  470 (699)
Q Consensus       397 ~L~L~~n~l~~~~~~~~~~-l~~L~~L~ls----~n~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (699)
                      +|+++.|++++..+..+.. +++|+.|+++    .|.+++...+ .+...                              
T Consensus       382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~------------------------------  431 (592)
T 3ogk_B          382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL------------------------------  431 (592)
T ss_dssp             EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH------------------------------
T ss_pred             EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH------------------------------
Confidence            9999999998766666655 8999999997    4455432110 00000                              


Q ss_pred             ccccceeEEeecceeeeeCCCCCCcccEEEccCCc--cCccCCcccc-ccCccCeEEccCCcCccc-CCccccCCCCCCE
Q 040184          471 MEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK--LTGEIPPQIS-KLTRIRALNLSHNNLTGV-IPVTFSNLNQVES  546 (699)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~  546 (699)
                                         ...+++|+.|++++|.  +++..+..+. .+++|++|+|++|.+++. ++..+..+++|++
T Consensus       432 -------------------~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  492 (592)
T 3ogk_B          432 -------------------LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK  492 (592)
T ss_dssp             -------------------HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCE
T ss_pred             -------------------HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCe
Confidence                               0125689999998654  6655555544 489999999999999863 4455678899999


Q ss_pred             EeCCCCccccc-CCcccccCCCCCeeecccCcCccc
Q 040184          547 LDISYNNLNGK-IPPQLVELNALAFFSVAHNNLSGK  581 (699)
Q Consensus       547 L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~  581 (699)
                      |++++|.+++. ++.....+++|++|++++|+++..
T Consensus       493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            99999998754 344556799999999999998754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=5.7e-28  Score=245.97  Aligned_cols=261  Identities=22%  Similarity=0.266  Sum_probs=203.8

Q ss_pred             ceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCcc
Q 040184          276 EGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNM  355 (699)
Q Consensus       276 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~  355 (699)
                      +.++++++.++ .+|..+.  ++|+.|++++|.+....+..|..+++|++|++++|.+...                   
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-------------------   67 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK-------------------   67 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE-------------------
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc-------------------
Confidence            45666666665 3343332  4677777777776654444566666777777766665421                   


Q ss_pred             ccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCC-cccCCCCCCCEEECcCCcccccCC
Q 040184          356 LYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVP-IQLCRLKQLRLIDLSNNNIFGQIP  434 (699)
Q Consensus       356 ~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~  434 (699)
                        +..+.. +..+++|++|++++|.++. ++..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+
T Consensus        68 --~~~~~~-~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  143 (306)
T 2z66_A           68 --GCCSQS-DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN  143 (306)
T ss_dssp             --EEEEHH-HHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred             --cCcccc-cccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence              111122 4567788888888888874 45557788889999999988886554 578888999999999999887666


Q ss_pred             CccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCc-cCCcc
Q 040184          435 GCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG-EIPPQ  513 (699)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~  513 (699)
                      ..+..                                                     +++|++|++++|.+++ ..|..
T Consensus       144 ~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~  170 (306)
T 2z66_A          144 GIFNG-----------------------------------------------------LSSLEVLKMAGNSFQENFLPDI  170 (306)
T ss_dssp             TTTTT-----------------------------------------------------CTTCCEEECTTCEEGGGEECSC
T ss_pred             hhccc-----------------------------------------------------CcCCCEEECCCCccccccchhH
Confidence            55543                                                     3588999999999886 57888


Q ss_pred             ccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCC-CCC
Q 040184          514 ISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQF-TTF  592 (699)
Q Consensus       514 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l  592 (699)
                      +..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+ +++
T Consensus       171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L  250 (306)
T 2z66_A          171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL  250 (306)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred             HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence            9999999999999999999989999999999999999999998888789999999999999999999999988887 489


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184          593 KEDSYEGNPLLCGKPLPDCDVAAVPEAS  620 (699)
Q Consensus       593 ~~~~~~~Np~~C~~~~~~c~~~~~~~~~  620 (699)
                      +.+++++||+.|     +|+..|+..|.
T Consensus       251 ~~L~L~~N~~~~-----~c~~~~~~~~l  273 (306)
T 2z66_A          251 AFLNLTQNDFAC-----TCEHQSFLQWI  273 (306)
T ss_dssp             CEEECTTCCEEC-----SGGGHHHHHHH
T ss_pred             CEEEccCCCeec-----ccChHHHHHHH
Confidence            999999999999     78866665554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.7e-26  Score=246.78  Aligned_cols=248  Identities=23%  Similarity=0.200  Sum_probs=197.2

Q ss_pred             CcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccC
Q 040184          227 LEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMAS  306 (699)
Q Consensus       227 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  306 (699)
                      ...++.++..+.. +|..+  .+++++|++++|.+++..+..|.++++|+.|++++|++++..+..|.++++|+.|++++
T Consensus        56 ~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            4566777666653 34433  35777777777777776677777777777777777777766666777777777777777


Q ss_pred             CcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCC-CCCCCc
Q 040184          307 NHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYN-SFSGYI  385 (699)
Q Consensus       307 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~  385 (699)
                      |.+....+..|..+++|++|++++|.+..                        ++...|..+++|+.|++++| .+....
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCccccC
Confidence            77776666666777777777777776652                        22333788999999999994 555555


Q ss_pred             ChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccccccccccc
Q 040184          386 PYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYS  465 (699)
Q Consensus       386 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (699)
                      +..+.++++|++|++++|++++. | .+..+++|+.|++++|.+++..|..+..                          
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------  240 (452)
T 3zyi_A          189 EGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG--------------------------  240 (452)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTT--------------------------
T ss_pred             hhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccC--------------------------
Confidence            66799999999999999999854 4 5888999999999999999887776654                          


Q ss_pred             CCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCC
Q 040184          466 AGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVE  545 (699)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  545 (699)
                                                 +++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+
T Consensus       241 ---------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          241 ---------------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             ---------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             ---------------------------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence                                       35899999999999999999999999999999999999988888999999999


Q ss_pred             EEeCCCCcccc
Q 040184          546 SLDISYNNLNG  556 (699)
Q Consensus       546 ~L~Ls~N~l~~  556 (699)
                      .|+|++|.+..
T Consensus       294 ~L~L~~Np~~C  304 (452)
T 3zyi_A          294 ELHLHHNPWNC  304 (452)
T ss_dssp             EEECCSSCEEC
T ss_pred             EEEccCCCcCC
Confidence            99999999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=3.7e-26  Score=244.82  Aligned_cols=249  Identities=25%  Similarity=0.229  Sum_probs=188.5

Q ss_pred             CCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEecc
Q 040184          226 NLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMA  305 (699)
Q Consensus       226 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  305 (699)
                      ..+.++.++..+. .+|..+  .++++.|++++|.+++..+..|.++++|+.|++++|.+.+..+..|.++++|+.|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4567777777765 344444  3678888888888887777788888888888888888887777778888888888888


Q ss_pred             CCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCC-CCCCC
Q 040184          306 SNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYN-SFSGY  384 (699)
Q Consensus       306 ~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~  384 (699)
                      +|++....+..|..+++|++|++++|.+....                        ...|..+++|++|++++| .+...
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~------------------------~~~~~~l~~L~~L~l~~~~~l~~i  176 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIP------------------------SYAFNRIPSLRRLDLGELKRLSYI  176 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC------------------------TTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccC------------------------HHHhhhCcccCEeCCCCCCCccee
Confidence            88888666667788888888888888776322                        222667778888888874 44444


Q ss_pred             cChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccc
Q 040184          385 IPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTY  464 (699)
Q Consensus       385 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (699)
                      .+..+.++++|++|++++|+++. +| .+..+++|+.|++++|++++..|..+..                         
T Consensus       177 ~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------  229 (440)
T 3zyj_A          177 SEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG-------------------------  229 (440)
T ss_dssp             CTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTT-------------------------
T ss_pred             CcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhcc-------------------------
Confidence            45577888888888888888873 34 4777888888888888887776665544                         


Q ss_pred             cCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCC
Q 040184          465 SAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV  544 (699)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  544 (699)
                                                  +++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|
T Consensus       230 ----------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          230 ----------------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             ----------------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ----------------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence                                        3478888888888888778888888888888888888887777778888888


Q ss_pred             CEEeCCCCcccc
Q 040184          545 ESLDISYNNLNG  556 (699)
Q Consensus       545 ~~L~Ls~N~l~~  556 (699)
                      +.|+|++|.+..
T Consensus       282 ~~L~L~~Np~~C  293 (440)
T 3zyj_A          282 ERIHLHHNPWNC  293 (440)
T ss_dssp             CEEECCSSCEEC
T ss_pred             CEEEcCCCCccC
Confidence            888888888763

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.3e-26  Score=231.42  Aligned_cols=236  Identities=21%  Similarity=0.216  Sum_probs=129.4

Q ss_pred             CCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEccccc-CcccCCCCCCCCCccEEEc
Q 040184          273 SHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENN-ISGSLPSCSSHSSITQVHL  351 (699)
Q Consensus       273 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~L~~L~l  351 (699)
                      ++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|. +...               
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~---------------   96 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV---------------   96 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC---------------
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc---------------
Confidence            345555555555554444444555555555555555544444455555555555555554 3311               


Q ss_pred             cCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccc
Q 040184          352 SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFG  431 (699)
Q Consensus       352 ~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~  431 (699)
                               +...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus        97 ---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A           97 ---------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             ---------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             ---------CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence                     11124455556666666666665555556666666666666666665555556666666666666666654


Q ss_pred             cCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCC
Q 040184          432 QIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP  511 (699)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  511 (699)
                      ..+..+..                                                     +++|+.|++++|.+++..|
T Consensus       168 ~~~~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~  194 (285)
T 1ozn_A          168 VPERAFRG-----------------------------------------------------LHSLDRLLLHQNRVAHVHP  194 (285)
T ss_dssp             ECTTTTTT-----------------------------------------------------CTTCCEEECCSSCCCEECT
T ss_pred             cCHHHhcC-----------------------------------------------------ccccCEEECCCCcccccCH
Confidence            43333322                                                     2355666666666665556


Q ss_pred             ccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCC
Q 040184          512 PQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWT  586 (699)
Q Consensus       512 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~  586 (699)
                      ..|..+++|++|++++|++++..+..+..+++|++|++++|.+....+.. .-...++.+..+.+.+.+..|..+
T Consensus       195 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL  268 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred             hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence            66666666666666666666655555666666666666666665332211 111234444455666666666543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=3.7e-29  Score=279.87  Aligned_cols=424  Identities=17%  Similarity=0.121  Sum_probs=231.7

Q ss_pred             hcCCCCCCCEEEcccCcccccc--------------chhhhhCCCCCCEEEcCCCcCcccCCCCCC-CCCCCCEEEccCc
Q 040184           97 FLYNQHDLEYVDFSDSNLKGEF--------------LNWLLENNTNLNTLVLRNNSLSGPFRMPIQ-PHWHLDTLYVSKN  161 (699)
Q Consensus        97 ~l~~~~~L~~L~ls~n~~~~~~--------------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n  161 (699)
                      .+..+++|++|+++++.....+              ...++..+++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            4455666666666665421111              122335667777777777776654443443 4677777777777


Q ss_pred             -cCCccCchhhhhcCCCCcEEeCcCCcccccCCcccc----CCCCCCEEEccCCc--CCCccchHHhhcCCCCcEEEccC
Q 040184          162 -FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG----DMNSLEALDLSHNQ--LTGEIPEHLAMSCFNLEFLVLSE  234 (699)
Q Consensus       162 -~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~  234 (699)
                       .+++.....+...+++|++|++++|.+++..+..+.    .+++|++|++++|.  +.......+...+++|++|++++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence             443222334444577888888888877654443333    56688888888876  22111222334568888888887


Q ss_pred             CcCCccCcccccCCCCCcEEEccCCc-------CCccCCccCcCCCCCceE-ECCCCcCcCcCchhhhccCCCcEEeccC
Q 040184          235 NSLLGQLFSKKNYLRKLVSLHLDANY-------FTGEIPKSLSNCSHLEGL-YMSDNNLYGNIPAWLGNLSSLYDIMMAS  306 (699)
Q Consensus       235 n~l~~~~~~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~  306 (699)
                      |...+.++..+..+++|++|+++.+.       +.+ .+..+.++++|+.| .+.+... +.++..+..+++|+.|++++
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~  298 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY  298 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence            74333356666677888888765443       221 23356777777777 3333222 23444455677788888877


Q ss_pred             CcccccC-CccccCCCCCcEEEcccccCccc-CCCCC-CCCCccEEEccC---------ccccccCCcccccCCCCccEE
Q 040184          307 NHLQGPI-PLEFCQLNYLQILDLSENNISGS-LPSCS-SHSSITQVHLSK---------NMLYGPLRYGTFFNRSSIVTL  374 (699)
Q Consensus       307 n~~~~~~-~~~~~~l~~L~~L~l~~n~i~~~-~~~~~-~~~~L~~L~l~~---------n~~~~~~~~~~~~~~~~L~~L  374 (699)
                      |.+.+.. ...+..+++|+.|++++| +... ++... .+++|++|++.+         +.+++.........+++|+.|
T Consensus       299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L  377 (594)
T 2p1m_B          299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV  377 (594)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence            7755322 222456777777777776 3211 11111 355666666632         222221111111236677777


Q ss_pred             ECCCCCCCCCcChhhh-cCCCCCEEEcc--c----CcCCCCC-----CcccCCCCCCCEEECcCCcccccCCCccccCCc
Q 040184          375 DLSYNSFSGYIPYWIE-RLTYLRYLILA--N----NNLEGEV-----PIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSL  442 (699)
Q Consensus       375 ~Ls~n~i~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~-----~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~  442 (699)
                      .+..+.+++.....+. .+++|+.|+++  +    +.+++..     +..+..+++|+.|++++ .+++..+..+..   
T Consensus       378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~---  453 (594)
T 2p1m_B          378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT---  453 (594)
T ss_dssp             EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH---
T ss_pred             HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH---
Confidence            6666666654444443 46777777777  3    3344211     11244566777777755 443222111110   


Q ss_pred             cCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccc-cccCccC
Q 040184          443 HNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIR  521 (699)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~  521 (699)
                                                                       .+++|+.|++++|.+++..+..+ ..+++|+
T Consensus       454 -------------------------------------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~  484 (594)
T 2p1m_B          454 -------------------------------------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR  484 (594)
T ss_dssp             -------------------------------------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCC
T ss_pred             -------------------------------------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcC
Confidence                                                             13466777777777654433333 5566777


Q ss_pred             eEEccCCcCcccCCc-cccCCCCCCEEeCCCCcccccCCccc-ccCCCCCeeecccC
Q 040184          522 ALNLSHNNLTGVIPV-TFSNLNQVESLDISYNNLNGKIPPQL-VELNALAFFSVAHN  576 (699)
Q Consensus       522 ~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~l~~N  576 (699)
                      +|+|++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+
T Consensus       485 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             EEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             EEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            777777776433222 23346677777777776643322333 34555555555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=8.5e-27  Score=234.62  Aligned_cols=226  Identities=22%  Similarity=0.212  Sum_probs=120.6

Q ss_pred             cEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCC-CCCCccEEEccCccccccCCcccccCCCCccEEECCC
Q 040184          300 YDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS-SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSY  378 (699)
Q Consensus       300 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~  378 (699)
                      +.++.+++.+. .+|..+  .++|++|++++|.+.+..+..+ .+++|+.|++++|.+.+..+.. +..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCC
Confidence            45666666665 334332  3467777777777765444333 4555555555555554433322 55555555555555


Q ss_pred             CC-CCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccc
Q 040184          379 NS-FSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFN  457 (699)
Q Consensus       379 n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (699)
                      |. ++...+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..                  
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------  151 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------  151 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc------------------
Confidence            54 44444555555555555555555555544555555555555555555554333322222                  


Q ss_pred             ccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCcc
Q 040184          458 HNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVT  537 (699)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  537 (699)
                                                         +++|+.|++++|++++..+..|..+++|++|++++|.+++..|..
T Consensus       152 -----------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  196 (285)
T 1ozn_A          152 -----------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA  196 (285)
T ss_dssp             -----------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             -----------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence                                               235555555555555444444555555555555555555555555


Q ss_pred             ccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccC
Q 040184          538 FSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKI  582 (699)
Q Consensus       538 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  582 (699)
                      |..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.+
T Consensus       197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            555555555555555555444444555555555555555555433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2e-27  Score=242.76  Aligned_cols=246  Identities=21%  Similarity=0.197  Sum_probs=166.0

Q ss_pred             CCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEc
Q 040184          272 CSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHL  351 (699)
Q Consensus       272 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l  351 (699)
                      +++|+.|++++|++++..+..|..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..+    .++|+.|++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l  106 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence            3344444444444444333444444444444444444443222  4444444555554444442221    145555555


Q ss_pred             cCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccC-CCCCCCEEECcCCccc
Q 040184          352 SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC-RLKQLRLIDLSNNNIF  430 (699)
Q Consensus       352 ~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ls~n~i~  430 (699)
                      ++|.+.+..    ...+++|++|++++|++++..+..+..+++|++|++++|++++..+..+. .+++|++|++++|.++
T Consensus       107 ~~n~l~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          107 ANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CSSCCSEEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCccCCcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            555553322    22356788899999888887777888888999999999988876666653 6889999999999887


Q ss_pred             ccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccC
Q 040184          431 GQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEI  510 (699)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  510 (699)
                      +..+.                                                       ..+++|+.|++++|++++. 
T Consensus       183 ~~~~~-------------------------------------------------------~~l~~L~~L~Ls~N~l~~l-  206 (317)
T 3o53_A          183 DVKGQ-------------------------------------------------------VVFAKLKTLDLSSNKLAFM-  206 (317)
T ss_dssp             EEECC-------------------------------------------------------CCCTTCCEEECCSSCCCEE-
T ss_pred             ccccc-------------------------------------------------------cccccCCEEECCCCcCCcc-
Confidence            54211                                                       1145889999999999854 


Q ss_pred             CccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCccc-ccCCcccccCCCCCeeecccC-cCcccCCC
Q 040184          511 PPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLN-GKIPPQLVELNALAFFSVAHN-NLSGKIPE  584 (699)
Q Consensus       511 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~l~~N-~l~~~~~~  584 (699)
                      |..+..+++|++|+|++|++++ +|..+..+++|+.|++++|.+. +.+|..+..+++|+.+++++| .+.+..|.
T Consensus       207 ~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          207 GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            4558899999999999999994 5777889999999999999998 777888889999999999955 46655443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=7.8e-26  Score=231.66  Aligned_cols=225  Identities=18%  Similarity=0.202  Sum_probs=155.1

Q ss_pred             CCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEE
Q 040184          102 HDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL  181 (699)
Q Consensus       102 ~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L  181 (699)
                      ++++.|++++|.++ .+|..+ .++++|++|++++|.+. .+|..+..+++|++|++++|+++ .+|..+.. +++|++|
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLREL  155 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCEE
T ss_pred             cceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCEE
Confidence            45666666666665 555543 34666666666666665 45555666666666666666665 55555444 5566666


Q ss_pred             eCcCCcccccCCcccc---------CCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCc
Q 040184          182 NLSRNDFNGSIPSSIG---------DMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLV  252 (699)
Q Consensus       182 ~L~~n~i~~~~~~~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  252 (699)
                      ++++|.+.+.+|..+.         .+++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+ +|..+..+++|+
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~  232 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE  232 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCCc-CchhhccCCCCC
Confidence            6666555555555544         3777777777777777 777664 457777777777777764 445577777888


Q ss_pred             EEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEccccc
Q 040184          253 SLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENN  332 (699)
Q Consensus       253 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  332 (699)
                      +|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.+.+.+|..+..+++|+.+++..+.
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            88888877777777777888888888888877777777777888888888888887777788888888888888877665


Q ss_pred             Cc
Q 040184          333 IS  334 (699)
Q Consensus       333 i~  334 (699)
                      +.
T Consensus       313 ~~  314 (328)
T 4fcg_A          313 QA  314 (328)
T ss_dssp             SC
T ss_pred             HH
Confidence            54

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=2.2e-25  Score=228.31  Aligned_cols=225  Identities=18%  Similarity=0.207  Sum_probs=179.1

Q ss_pred             cccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEc
Q 040184           79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYV  158 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  158 (699)
                      ++++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+ .++++|++|++++|.+. .+|..+..+++|++|++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            6888888888886 55666777888888888888887 777664 77888888888888887 56777888888888888


Q ss_pred             cCccCCccCchhhhh--------cCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEE
Q 040184          159 SKNFFQGNIPLEIGV--------YFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFL  230 (699)
Q Consensus       159 ~~n~i~~~~~~~~~~--------~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  230 (699)
                      ++|++.+.+|..+..        .+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+ ..+++|++|
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l-~~l~~L~~L  234 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI-HHLPKLEEL  234 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG-GGCTTCCEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh-ccCCCCCEE
Confidence            888777777766532        3678888888888887 67777888888888888888887 566654 468888888


Q ss_pred             EccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCccc
Q 040184          231 VLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQ  310 (699)
Q Consensus       231 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  310 (699)
                      ++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++++++|+.+++..+.+.
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            88888888888888888888888888888887788888888888888888888888888888888888888888766544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2.9e-28  Score=272.63  Aligned_cols=397  Identities=14%  Similarity=0.089  Sum_probs=228.7

Q ss_pred             CccccEEEccCCcCccccchhcC-CCCCCCEEEcccC-ccccccchhhhhCCCCCCEEEcCCCcCcccCCC----CCCCC
Q 040184           77 KFQLESVALSGSGIHATFPKFLY-NQHDLEYVDFSDS-NLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRM----PIQPH  150 (699)
Q Consensus        77 ~~~L~~L~ls~~~i~~~~~~~l~-~~~~L~~L~ls~n-~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l  150 (699)
                      +++|++|++++|.+++..+..+. .+++|++|++++| .+++.....++.++++|++|++++|.+++..+.    ....+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            34788888888888776666665 6889999999888 555443445556889999999998887654332    23466


Q ss_pred             CCCCEEEccCcc--CCccCchhhhhcCCCCcEEeCcCC-cccccCCccccCCCCCCEEEccCCc-------CCCccchHH
Q 040184          151 WHLDTLYVSKNF--FQGNIPLEIGVYFPRLVYLNLSRN-DFNGSIPSSIGDMNSLEALDLSHNQ-------LTGEIPEHL  220 (699)
Q Consensus       151 ~~L~~L~l~~n~--i~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~  220 (699)
                      ++|++|++++|.  +.......+...+++|++|++++| .+. .++..+..+++|+.|+++.+.       +. .++..+
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l  261 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL  261 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH
Confidence            788888888886  322222233344688888888888 344 366777788888888866543       22 333333


Q ss_pred             hhcCCCCcEE-EccCCcCCccCcccccCCCCCcEEEccCCcCCccC-CccCcCCCCCceEECCCCcCcCc-CchhhhccC
Q 040184          221 AMSCFNLEFL-VLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEI-PKSLSNCSHLEGLYMSDNNLYGN-IPAWLGNLS  297 (699)
Q Consensus       221 ~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~  297 (699)
                       .++++|+.+ .+.+... ..++..+..+++|++|++++|.+++.. ...+..+++|+.|++++| +.+. .+.....++
T Consensus       262 -~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          262 -SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             -HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             -hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence             467778777 3333221 233333445677777777777755322 122456677777777766 3321 222223466


Q ss_pred             CCcEEeccC---------CcccccCCcccc-CCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccC
Q 040184          298 SLYDIMMAS---------NHLQGPIPLEFC-QLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFN  367 (699)
Q Consensus       298 ~L~~L~l~~---------n~~~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  367 (699)
                      +|+.|++.+         +.+++.....+. .+++|+.|+++.|.++.                       .........
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~-----------------------~~~~~l~~~  395 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN-----------------------AALITIARN  395 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH-----------------------HHHHHHHHH
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH-----------------------HHHHHHHhh
Confidence            777776633         222221111111 24555555555554442                       211111123


Q ss_pred             CCCccEEECC--C----CCCCCC-----cChhhhcCCCCCEEEcccCcCCCCCCcccCC-CCCCCEEECcCCcccccCCC
Q 040184          368 RSSIVTLDLS--Y----NSFSGY-----IPYWIERLTYLRYLILANNNLEGEVPIQLCR-LKQLRLIDLSNNNIFGQIPG  435 (699)
Q Consensus       368 ~~~L~~L~Ls--~----n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ls~n~i~~~~~~  435 (699)
                      +++|+.|+++  +    +.+++.     ++..+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++..+.
T Consensus       396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~  474 (594)
T 2p1m_B          396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH  474 (594)
T ss_dssp             CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred             CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence            5566666666  2    334321     122255667777777765 444333333333 66777777777776543221


Q ss_pred             ccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCc-cc
Q 040184          436 CLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP-QI  514 (699)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~  514 (699)
                      .+.                                                    ..+++|+.|++++|.+++.... ..
T Consensus       475 ~l~----------------------------------------------------~~~~~L~~L~L~~n~~~~~~~~~~~  502 (594)
T 2p1m_B          475 HVL----------------------------------------------------SGCDSLRKLEIRDCPFGDKALLANA  502 (594)
T ss_dssp             HHH----------------------------------------------------HHCTTCCEEEEESCSCCHHHHHHTG
T ss_pred             HHH----------------------------------------------------hcCCCcCEEECcCCCCcHHHHHHHH
Confidence            110                                                    0134677777777777543333 34


Q ss_pred             cccCccCeEEccCCcCcccCCccc-cCCCCCCEEeCCCCcc
Q 040184          515 SKLTRIRALNLSHNNLTGVIPVTF-SNLNQVESLDISYNNL  554 (699)
Q Consensus       515 ~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l  554 (699)
                      ..+++|++|++++|+++......+ ..++.|+...+..+.-
T Consensus       503 ~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          503 SKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             GGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             HhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence            557888888888888753322333 4467776666665543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.4e-24  Score=239.17  Aligned_cols=266  Identities=21%  Similarity=0.182  Sum_probs=180.8

Q ss_pred             CCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccE
Q 040184            3 SLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLES   82 (699)
Q Consensus         3 ~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~   82 (699)
                      ++++|++++|+++ .+|. .+.  ++|++|++++|.++ .+|.    .+++|++|++++|.+...+.      .+++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~------~l~~L~~  105 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV------LPPGLLE  105 (622)
T ss_dssp             CCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC------CCTTCCE
T ss_pred             CCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC------CCCCCCE
Confidence            4778888888888 7777 343  78888888888887 5663    46788888888888765432      2347888


Q ss_pred             EEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCcc
Q 040184           83 VALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNF  162 (699)
Q Consensus        83 L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~  162 (699)
                      |++++|.+++..+    .+++|+.|++++|.++ .+|.    .+++|++|++++|.+.+. +.   ..++|+.|++++|.
T Consensus       106 L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~  172 (622)
T 3g06_A          106 LSIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQ  172 (622)
T ss_dssp             EEECSCCCCCCCC----CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSC
T ss_pred             EECcCCcCCCCCC----CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCC
Confidence            8888888766433    5677888888888877 4553    347788888888877753 22   24567777888777


Q ss_pred             CCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCc
Q 040184          163 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLF  242 (699)
Q Consensus       163 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  242 (699)
                      ++ .+|    ..+++|+.|++++|.+++ +|..   .++|+.|++++|.++ .+|.    .+++|++|++++|.+.+ +|
T Consensus       173 l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~-lp  237 (622)
T 3g06_A          173 LT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS-LP  237 (622)
T ss_dssp             CS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC-CC
T ss_pred             CC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCc-CC
Confidence            77 455    235677777777777764 3332   367777777777776 5553    24677777777777764 33


Q ss_pred             ccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccC
Q 040184          243 SKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQ  319 (699)
Q Consensus       243 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  319 (699)
                         ..+++|+.|++++|.++. +|.   .+++|+.|++++|+++ .+|..+.++++|+.|++++|.+.+..|..+..
T Consensus       238 ---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          238 ---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             ---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence               345677777777777763 343   4566777777777776 45666677777777777777766655555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-27  Score=242.91  Aligned_cols=262  Identities=18%  Similarity=0.183  Sum_probs=213.4

Q ss_pred             CCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccC
Q 040184          274 HLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSK  353 (699)
Q Consensus       274 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~  353 (699)
                      +++..+++.+.+.......+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ ...+++|+.|++++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence            34556677777765555666778899999999999998888899999999999999999986655 55889999999999


Q ss_pred             ccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccC
Q 040184          354 NMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQI  433 (699)
Q Consensus       354 n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~  433 (699)
                      |.+.+.      ...++|++|++++|++++..+.   .+++|++|++++|++++..+..+..+++|++|++++|.+++..
T Consensus        90 n~l~~l------~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           90 NYVQEL------LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SEEEEE------EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             Cccccc------cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            998652      3447899999999999876554   3678999999999999877778888999999999999998765


Q ss_pred             CCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCcc
Q 040184          434 PGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ  513 (699)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  513 (699)
                      +..+..                                                    .+++|++|++++|.+++. + .
T Consensus       161 ~~~~~~----------------------------------------------------~l~~L~~L~L~~N~l~~~-~-~  186 (317)
T 3o53_A          161 FAELAA----------------------------------------------------SSDTLEHLNLQYNFIYDV-K-G  186 (317)
T ss_dssp             GGGGGG----------------------------------------------------GTTTCCEEECTTSCCCEE-E-C
T ss_pred             HHHHhh----------------------------------------------------ccCcCCEEECCCCcCccc-c-c
Confidence            544321                                                    245899999999999865 3 3


Q ss_pred             ccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCc-ccCCCCCcCCCCC
Q 040184          514 ISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLS-GKIPEWTAQFTTF  592 (699)
Q Consensus       514 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l  592 (699)
                      ...+++|++|+|++|++++..+ .+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +..|..+..++.+
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L  264 (317)
T 3o53_A          187 QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (317)
T ss_dssp             CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred             ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence            3458999999999999996544 5889999999999999999 56778899999999999999998 5666666667777


Q ss_pred             CCCccCCCC
Q 040184          593 KEDSYEGNP  601 (699)
Q Consensus       593 ~~~~~~~Np  601 (699)
                      +.+.+.+++
T Consensus       265 ~~l~l~~~~  273 (317)
T 3o53_A          265 QTVAKQTVK  273 (317)
T ss_dssp             HHHHHHHHH
T ss_pred             eEEECCCch
Confidence            777777443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.2e-24  Score=237.55  Aligned_cols=267  Identities=24%  Similarity=0.293  Sum_probs=137.7

Q ss_pred             CCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEc
Q 040184          177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHL  256 (699)
Q Consensus       177 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  256 (699)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|.+.+ +|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence            5777777777777 4555554  67777777777776 5665    35667777777776653 222   4566666666


Q ss_pred             cCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCccc
Q 040184          257 DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGS  336 (699)
Q Consensus       257 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~  336 (699)
                      ++|.+++ +|.   .+++|+.|++++|++++ +|..   +++|+.|++++|.+.+. |.   .+++|+.|++++|.+.  
T Consensus       109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~--  174 (622)
T 3g06_A          109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT--  174 (622)
T ss_dssp             CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--
T ss_pred             cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC--
Confidence            6666653 222   34556666666665553 2221   24444444444444321 11   1223333343333333  


Q ss_pred             CCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCC
Q 040184          337 LPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL  416 (699)
Q Consensus       337 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  416 (699)
                                           + ++    ..+++|+.|++++|.+++. |.   .+++|+.|++++|.++. +|.   .+
T Consensus       175 ---------------------~-l~----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~---~~  220 (622)
T 3g06_A          175 ---------------------S-LP----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPA---LP  220 (622)
T ss_dssp             ---------------------C-CC----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCC---CC
T ss_pred             ---------------------C-Cc----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCC---CC
Confidence                                 2 11    1234555555555555532 21   13455566666655552 222   13


Q ss_pred             CCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcc
Q 040184          417 KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKM  496 (699)
Q Consensus       417 ~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  496 (699)
                      ++|+.|++++|.+++ +|.                                                        .+++|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp~--------------------------------------------------------~l~~L  243 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LPV--------------------------------------------------------LPSEL  243 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCC--------------------------------------------------------CCTTC
T ss_pred             CCCCEEEccCCccCc-CCC--------------------------------------------------------CCCcC
Confidence            455666666665542 220                                                        12345


Q ss_pred             cEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccC
Q 040184          497 YGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVEL  565 (699)
Q Consensus       497 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  565 (699)
                      +.|++++|.++. +|.   .+++|+.|+|++|+++ .+|..+.++++|+.|+|++|.+++..|..+..+
T Consensus       244 ~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          244 KELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             cEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            555555555552 333   3455555556555555 345555555555555555555555555444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.5e-26  Score=234.05  Aligned_cols=209  Identities=20%  Similarity=0.129  Sum_probs=140.8

Q ss_pred             ccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCC-ccCccccc-------CCCCCcEEEccCCcCCccCCc
Q 040184          196 IGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL-GQLFSKKN-------YLRKLVSLHLDANYFTGEIPK  267 (699)
Q Consensus       196 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~  267 (699)
                      ++..++|+.|++++|.+  .+|..+...   |++|++++|.+. ...+..+.       .+++|++|++++|.+++..|.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            34455677777777777  566655432   677777777663 23343333       577888888888888877776


Q ss_pred             cC--cCCCCCceEECCCCcCcCcCchhhhcc-----CCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCC
Q 040184          268 SL--SNCSHLEGLYMSDNNLYGNIPAWLGNL-----SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC  340 (699)
Q Consensus       268 ~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  340 (699)
                      .+  ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+..+..+..+++|++|++++|++.+..+  
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--  190 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--  190 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--
Confidence            65  7888888888888888866 6777766     788888888888877777777888888888888877653210  


Q ss_pred             CCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCC---cChhhhcCCCCCEEEcccCcCCCCCC-cccCCC
Q 040184          341 SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGY---IPYWIERLTYLRYLILANNNLEGEVP-IQLCRL  416 (699)
Q Consensus       341 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l  416 (699)
                                        ..+...+..+++|++|++++|++++.   ....+..+++|++|++++|++++..+ ..+..+
T Consensus       191 ------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          191 ------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             ------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             ------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence                              00011135677788888888887732   22334566778888888887776553 344556


Q ss_pred             CCCCEEECcCCccc
Q 040184          417 KQLRLIDLSNNNIF  430 (699)
Q Consensus       417 ~~L~~L~ls~n~i~  430 (699)
                      ++|++|++++|.++
T Consensus       253 ~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK  266 (312)
T ss_dssp             TTCCEEECTTSCCS
T ss_pred             CCCCEEECCCCccC
Confidence            66777777777665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=5e-26  Score=231.83  Aligned_cols=247  Identities=19%  Similarity=0.146  Sum_probs=191.6

Q ss_pred             cccEEEccCCcCccccchhcCCCCCCCEEEcccCccc-cccchhhh------hCCCCCCEEEcCCCcCcccCCCCC--CC
Q 040184           79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLK-GEFLNWLL------ENNTNLNTLVLRNNSLSGPFRMPI--QP  149 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~-~~~~~~~~------~~l~~L~~L~Ls~n~i~~~~~~~~--~~  149 (699)
                      +|++|++++|.+  .+|..+...  |+.|++++|.++ ..+|....      .++++|++|++++|.+.+..|..+  ..
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            688888888888  556555443  888888888884 45555431      268999999999999998888776  88


Q ss_pred             CCCCCEEEccCccCCccCchhhhhc----CCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCcc--chHH-hh
Q 040184          150 HWHLDTLYVSKNFFQGNIPLEIGVY----FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEI--PEHL-AM  222 (699)
Q Consensus       150 l~~L~~L~l~~n~i~~~~~~~~~~~----~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~-~~  222 (699)
                      +++|++|++++|++++. |..+...    .++|++|++++|++.+..|..|+.+++|++|++++|++.+.+  +..+ +.
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            99999999999999855 7665542    279999999999999888899999999999999999987542  2232 35


Q ss_pred             cCCCCcEEEccCCcCCc---cCcccccCCCCCcEEEccCCcCCccCC-ccCcCCCCCceEECCCCcCcCcCchhhhccCC
Q 040184          223 SCFNLEFLVLSENSLLG---QLFSKKNYLRKLVSLHLDANYFTGEIP-KSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS  298 (699)
Q Consensus       223 ~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  298 (699)
                      .+++|++|++++|.+.+   .....+..+++|++|++++|.+++..| ..+..+++|+.|++++|+++ .+|..+.  ++
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~  275 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK  275 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence            78899999999998873   222344577889999999998887654 45666788899999988887 5666555  78


Q ss_pred             CcEEeccCCcccccCCccccCCCCCcEEEcccccCcc
Q 040184          299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG  335 (699)
Q Consensus       299 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~  335 (699)
                      |+.|++++|++++. |. +..+++|++|++++|++++
T Consensus       276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            88888888888765 54 7788888888888888764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=5.8e-26  Score=245.39  Aligned_cols=150  Identities=21%  Similarity=0.173  Sum_probs=94.3

Q ss_pred             CCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEc
Q 040184          272 CSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHL  351 (699)
Q Consensus       272 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l  351 (699)
                      +++|+.|++++|.+++..|..|..+++|+.|++++|.+.+..|  +..+++|++|++++|.+.+..+    .++|+.|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence            3477888888888777667777777888888888887775544  6777777777777777764332    155666666


Q ss_pred             cCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccC-CCCCCCEEECcCCccc
Q 040184          352 SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC-RLKQLRLIDLSNNNIF  430 (699)
Q Consensus       352 ~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ls~n~i~  430 (699)
                      ++|.+.+..+    ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus       107 ~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          107 ANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             cCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            6666544322    1245566666666666655555555566666666666666554554443 4555666666666554


Q ss_pred             c
Q 040184          431 G  431 (699)
Q Consensus       431 ~  431 (699)
                      +
T Consensus       183 ~  183 (487)
T 3oja_A          183 D  183 (487)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=8.9e-26  Score=243.89  Aligned_cols=147  Identities=24%  Similarity=0.177  Sum_probs=69.0

Q ss_pred             CCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcc
Q 040184          250 KLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLS  329 (699)
Q Consensus       250 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  329 (699)
                      +|++|++++|.+++..|.+|..+++|+.|++++|.+++..|  +..+++|+.|++++|.+.+..     ..++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence            45555555555554444445555555555555555443332  444555555555555444221     11445555555


Q ss_pred             cccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhh-cCCCCCEEEcccCcCC
Q 040184          330 ENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIE-RLTYLRYLILANNNLE  406 (699)
Q Consensus       330 ~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~  406 (699)
                      +|.+.+..+.  .+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus       108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            5555433322  2344555555555554333322 44445555555555555544444443 3455555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.1e-23  Score=209.68  Aligned_cols=182  Identities=24%  Similarity=0.277  Sum_probs=112.3

Q ss_pred             CccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCC
Q 040184          370 SIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDND  449 (699)
Q Consensus       370 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~  449 (699)
                      +++.|++++|++++..+..+.++++|++|++++|+++...+..|..+++|++|++++|.+++..+..+..          
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------  107 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ----------  107 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc----------
Confidence            4555666666555555555556666666666666665444444555666666666666655433333222          


Q ss_pred             CCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCc
Q 040184          450 DSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNN  529 (699)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  529 (699)
                                                                 +++|++|++++|.+++..+..|..+++|++|+|++|.
T Consensus       108 -------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  144 (270)
T 2o6q_A          108 -------------------------------------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE  144 (270)
T ss_dssp             -------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------------------------------------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc
Confidence                                                       2356666666666665555566666667777777776


Q ss_pred             CcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCC
Q 040184          530 LTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC  604 (699)
Q Consensus       530 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C  604 (699)
                      +++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++++.+++++|||.|
T Consensus       145 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            666555556666677777777776665555556666677777777776666555556566666667777777777

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=8.5e-24  Score=211.55  Aligned_cols=186  Identities=22%  Similarity=0.246  Sum_probs=125.9

Q ss_pred             ccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccC
Q 040184          365 FFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHN  444 (699)
Q Consensus       365 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~  444 (699)
                      |..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..     
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----  122 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-----  122 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTT-----
T ss_pred             hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhccc-----
Confidence            556666777777777666655566666777777777777776666666677777777777777765443333222     


Q ss_pred             CCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCcc-CCccccccCccCeE
Q 040184          445 NGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE-IPPQISKLTRIRAL  523 (699)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  523 (699)
                                                                      +++|++|++++|.+++. +|..+..+++|++|
T Consensus       123 ------------------------------------------------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L  154 (276)
T 2z62_A          123 ------------------------------------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (276)
T ss_dssp             ------------------------------------------------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             ------------------------------------------------CCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence                                                            34677777777777653 46777777777777


Q ss_pred             EccCCcCcccCCccccCCCCCC----EEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCC
Q 040184          524 NLSHNNLTGVIPVTFSNLNQVE----SLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEG  599 (699)
Q Consensus       524 ~Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~  599 (699)
                      ++++|++++..+..+..+++|+    .|++++|.+++..+..+. ..+|+.|++++|++++..+..+..+++++.+++++
T Consensus       155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred             ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence            7777777766666666666666    777777777755554443 34677777777777766666666677777777777


Q ss_pred             CCCCC
Q 040184          600 NPLLC  604 (699)
Q Consensus       600 Np~~C  604 (699)
                      ||+.|
T Consensus       234 N~~~c  238 (276)
T 2z62_A          234 NPWDC  238 (276)
T ss_dssp             SCBCC
T ss_pred             Ccccc
Confidence            77777

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=4.2e-24  Score=214.53  Aligned_cols=190  Identities=24%  Similarity=0.239  Sum_probs=148.4

Q ss_pred             CCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCC
Q 040184          369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDN  448 (699)
Q Consensus       369 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~  448 (699)
                      ++++.|++++|.+++..+..+..+++|++|++++|++++..+  ...+++|++|++++|+++ .+|..+.          
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~----------   97 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQ----------   97 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTT----------
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhc----------
Confidence            467777888887777777777888888888888888774433  267788888888888876 3443332          


Q ss_pred             CCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCC
Q 040184          449 DDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHN  528 (699)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  528 (699)
                                                                 .+++|+.|++++|++++..+..|..+++|++|+|++|
T Consensus        98 -------------------------------------------~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N  134 (290)
T 1p9a_G           98 -------------------------------------------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN  134 (290)
T ss_dssp             -------------------------------------------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             -------------------------------------------cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence                                                       2457888888888888777788889999999999999


Q ss_pred             cCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCC
Q 040184          529 NLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPL  608 (699)
Q Consensus       529 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  608 (699)
                      ++++..+..|..+++|+.|+|++|+++...+..+..+++|+.|++++|+++ .+|..+.....++.+.+.+|||.|    
T Consensus       135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C----  209 (290)
T 1p9a_G          135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC----  209 (290)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC----
T ss_pred             CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC----
Confidence            999888888888999999999999998666667788899999999999988 456556567788889999999999    


Q ss_pred             CCCCCCCCCCCC
Q 040184          609 PDCDVAAVPEAS  620 (699)
Q Consensus       609 ~~c~~~~~~~~~  620 (699)
                       +|+..|+..|.
T Consensus       210 -~c~~~~l~~wl  220 (290)
T 1p9a_G          210 -NCEILYFRRWL  220 (290)
T ss_dssp             -SGGGHHHHHHH
T ss_pred             -cCccHHHHHHH
Confidence             77765554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=9.7e-23  Score=202.94  Aligned_cols=206  Identities=21%  Similarity=0.254  Sum_probs=161.3

Q ss_pred             CcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEccc
Q 040184          323 LQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILAN  402 (699)
Q Consensus       323 L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  402 (699)
                      .+.++++++.++. +|... .++++.|++++|.+.+ ++...|..+++|++|++++|.++...+..+..+++|++|++++
T Consensus        18 ~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            4445555555442 22211 1345555555555543 2333377888899999999888877777778889999999999


Q ss_pred             CcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeec
Q 040184          403 NNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTK  482 (699)
Q Consensus       403 n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (699)
                      |++.+..+..|..+++|++|++++|.+++..+..+..                                           
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------  131 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-------------------------------------------  131 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-------------------------------------------
Confidence            9998777777888999999999999988766655443                                           


Q ss_pred             ceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCccc
Q 040184          483 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQL  562 (699)
Q Consensus       483 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  562 (699)
                                +++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+
T Consensus       132 ----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (270)
T 2o6q_A          132 ----------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF  201 (270)
T ss_dssp             ----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ----------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence                      4589999999999997777779999999999999999998888889999999999999999997777778


Q ss_pred             ccCCCCCeeecccCcCcccCCC
Q 040184          563 VELNALAFFSVAHNNLSGKIPE  584 (699)
Q Consensus       563 ~~l~~L~~L~l~~N~l~~~~~~  584 (699)
                      ..+++|+.|++++|++.+.++.
T Consensus       202 ~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          202 DSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTCTTCCEEECCSSCBCCSSSS
T ss_pred             ccccCCCEEEecCCCeeCCCcc
Confidence            9999999999999999887763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1e-22  Score=203.61  Aligned_cols=221  Identities=22%  Similarity=0.206  Sum_probs=158.3

Q ss_pred             EEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCC
Q 040184          156 LYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN  235 (699)
Q Consensus       156 L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  235 (699)
                      .+..+..++ .+|..+.   +++++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++|
T Consensus        12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred             EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence            444444454 4565443   36888888888887766667888888888888888887 666555567888888888888


Q ss_pred             cCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCc-CchhhhccCCCcEEeccCCcccccCC
Q 040184          236 SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGN-IPAWLGNLSSLYDIMMASNHLQGPIP  314 (699)
Q Consensus       236 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~  314 (699)
                      .+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .|..+.++++|+.|++++|++.+..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            88777777788888888888888888876666788888888888888888753 47788888888888888888887666


Q ss_pred             ccccCCCCCc----EEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhh
Q 040184          315 LEFCQLNYLQ----ILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIE  390 (699)
Q Consensus       315 ~~~~~l~~L~----~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~  390 (699)
                      ..+..+++|+    .|++++|.+.+..+..+..                         .+|+.|++++|++++..+..+.
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-------------------------~~L~~L~L~~n~l~~~~~~~~~  221 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-------------------------IRLKELALDTNQLKSVPDGIFD  221 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-------------------------CCEEEEECCSSCCSCCCTTTTT
T ss_pred             HHhhhhhhccccceeeecCCCcccccCccccCC-------------------------CcccEEECCCCceeecCHhHhc
Confidence            6666666665    7777777776544333222                         2566666666666655555566


Q ss_pred             cCCCCCEEEcccCcCC
Q 040184          391 RLTYLRYLILANNNLE  406 (699)
Q Consensus       391 ~l~~L~~L~L~~n~l~  406 (699)
                      .+++|++|++++|.+.
T Consensus       222 ~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          222 RLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             TCCSCCEEECCSSCBC
T ss_pred             ccccccEEEccCCccc
Confidence            6666777777766665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.2e-22  Score=202.01  Aligned_cols=205  Identities=22%  Similarity=0.281  Sum_probs=158.0

Q ss_pred             cCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCE
Q 040184          318 CQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRY  397 (699)
Q Consensus       318 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  397 (699)
                      ..++++++++++++.++...+..  .++++.|++++|.+.+..+. .|..+++|+.|++++|.+++..+.  ..+++|++
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred             cccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence            34455555555555554322221  24556666666665443333 377888888899988888865443  67888999


Q ss_pred             EEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCccccccee
Q 040184          398 LILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESI  477 (699)
Q Consensus       398 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (699)
                      |++++|+++ .+|..+..+++|++|++++|++++..++.+..                                      
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~--------------------------------------  122 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG--------------------------------------  122 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence            999999988 66777888999999999999988766665544                                      


Q ss_pred             EEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 040184          478 MFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGK  557 (699)
Q Consensus       478 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  557 (699)
                                     +++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .
T Consensus       123 ---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~  186 (290)
T 1p9a_G          123 ---------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (290)
T ss_dssp             ---------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             ---------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence                           348899999999999887788899999999999999999877778889999999999999999 6


Q ss_pred             CCcccccCCCCCeeecccCcCcccC
Q 040184          558 IPPQLVELNALAFFSVAHNNLSGKI  582 (699)
Q Consensus       558 ~p~~l~~l~~L~~L~l~~N~l~~~~  582 (699)
                      +|..+..+++|+.+++++|++.+.+
T Consensus       187 ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          187 IPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cChhhcccccCCeEEeCCCCccCcC
Confidence            7888888889999999999998755

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.7e-22  Score=201.39  Aligned_cols=209  Identities=21%  Similarity=0.270  Sum_probs=166.7

Q ss_pred             hhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCcc
Q 040184          293 LGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIV  372 (699)
Q Consensus       293 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  372 (699)
                      ...+++|+.|++++|.+...  ..+..+++|++|++++|.+.                       +.   ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-----------------------~~---~~l~~l~~L~   88 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-----------------------DI---SALKELTNLT   88 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-----------------------CC---GGGTTCTTCC
T ss_pred             cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-----------------------Cc---hhhcCCCCCC
Confidence            44556666666666665422  23455556666666655554                       21   1267788899


Q ss_pred             EEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCC
Q 040184          373 TLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSL  452 (699)
Q Consensus       373 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~  452 (699)
                      +|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..             
T Consensus        89 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------  155 (272)
T 3rfs_A           89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK-------------  155 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------
T ss_pred             EEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-------------
Confidence            9999999998888888889999999999999999777777889999999999999988666554433             


Q ss_pred             cccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcc
Q 040184          453 VPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTG  532 (699)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  532 (699)
                                                              +++|+.|++++|++++..+..+..+++|++|++++|++++
T Consensus       156 ----------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          156 ----------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             ----------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ----------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence                                                    4589999999999998888888999999999999999999


Q ss_pred             cCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCC
Q 040184          533 VIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQF  589 (699)
Q Consensus       533 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  589 (699)
                      ..+..+..+++|+.|++++|.+.+.       +++|+.++++.|.++|.+|..++.+
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            8888899999999999999988743       5579999999999999999876544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.1e-22  Score=202.64  Aligned_cols=182  Identities=17%  Similarity=0.180  Sum_probs=92.8

Q ss_pred             ccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCC
Q 040184           23 LIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQH  102 (699)
Q Consensus        23 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~  102 (699)
                      ...+++|++|++++|.++ .++  .+..+++|+.|++++|.+....    .+..+++|++|++++|.+++..+..+.+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~~~--~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  109 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVRYLALGGNKLHDIS----ALKELTNLTYLILTGNQLQSLPNGVFDKLT  109 (272)
T ss_dssp             HHHHTTCCEEECTTSCCC-CCT--TGGGCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             cccccceeeeeeCCCCcc-ccc--ccccCCCCcEEECCCCCCCCch----hhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence            445667777777777665 232  3556666666666666654321    113333555555555555555555555555


Q ss_pred             CCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEe
Q 040184          103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN  182 (699)
Q Consensus       103 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~  182 (699)
                      +|++|++++|.++ .++...+.++++|++|++++|.+.+..+..+..+++|++|++++|+++ .++...+..+++|++|+
T Consensus       110 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          110 NLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             TCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEE
Confidence            5555555555555 233333345555555555555555444444445555555555555544 23333333344455555


Q ss_pred             CcCCcccccCCccccCCCCCCEEEccCCcCC
Q 040184          183 LSRNDFNGSIPSSIGDMNSLEALDLSHNQLT  213 (699)
Q Consensus       183 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  213 (699)
                      +++|.+++..+..+..+++|+.|++++|.+.
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence            5555444444444444444444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.6e-22  Score=198.94  Aligned_cols=179  Identities=22%  Similarity=0.266  Sum_probs=97.7

Q ss_pred             ccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECc
Q 040184          346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLS  425 (699)
Q Consensus       346 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls  425 (699)
                      .+.++++++.+.. +|.. +  .++++.|++++|.+++..+..+.++++|++|++++|++++..+..|..+++|++|+++
T Consensus        16 ~~~l~~~~~~l~~-~p~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           16 KKEVDCQGKSLDS-VPSG-I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GTEEECTTCCCSS-CCSC-C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CeEEecCCCCccc-cCCC-C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4455555555532 2222 1  2355666666666655555555556666666666666655555555556666666666


Q ss_pred             CCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCc
Q 040184          426 NNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK  505 (699)
Q Consensus       426 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  505 (699)
                      +|++++..+..+..                                                     +++|+.|++++|+
T Consensus        92 ~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~L~L~~N~  118 (251)
T 3m19_A           92 NNQLASLPLGVFDH-----------------------------------------------------LTQLDKLYLGGNQ  118 (251)
T ss_dssp             TSCCCCCCTTTTTT-----------------------------------------------------CTTCCEEECCSSC
T ss_pred             CCcccccChhHhcc-----------------------------------------------------cCCCCEEEcCCCc
Confidence            66655443333322                                                     2355555555555


Q ss_pred             cCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCccc
Q 040184          506 LTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGK  581 (699)
Q Consensus       506 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  581 (699)
                      +++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus       119 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            5554444455555555555555555555554555555555555555555554444555555555555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.4e-22  Score=210.97  Aligned_cols=261  Identities=17%  Similarity=0.147  Sum_probs=136.0

Q ss_pred             EEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCc----ccccCCC-CCcEEEcccCccccccccccCCC--C-C
Q 040184            6 VLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSL----EPFFNNS-KLKVFSGECNEIFVESESSHSMT--P-K   77 (699)
Q Consensus         6 ~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~--~-~   77 (699)
                      +++++.|+++|.+|. .+...++|++|+|++|.++ ..+.    +.+..++ +|++|++++|.+...........  . .
T Consensus         2 ~~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            2 NYKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EEECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             ccccccccchHHHHH-HHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            467899999977776 5566667999999999987 4554    5566777 77777777777654432211100  0 1


Q ss_pred             ccccEEEccCCcCccccchhc----CCC-CCCCEEEcccCccccccchhh---hhC-CCCCCEEEcCCCcCcccCCCCCC
Q 040184           78 FQLESVALSGSGIHATFPKFL----YNQ-HDLEYVDFSDSNLKGEFLNWL---LEN-NTNLNTLVLRNNSLSGPFRMPIQ  148 (699)
Q Consensus        78 ~~L~~L~ls~~~i~~~~~~~l----~~~-~~L~~L~ls~n~~~~~~~~~~---~~~-l~~L~~L~Ls~n~i~~~~~~~~~  148 (699)
                      .+|++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+   +.. .++|++|++++|.+.+....   
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---  156 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD---  156 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH---
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH---
Confidence            245555555555554444322    222 455555555555543333222   111 23455555555444421111   


Q ss_pred             CCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccc----cCC-CCCCEEEccCCcCCCc----cchH
Q 040184          149 PHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI----GDM-NSLEALDLSHNQLTGE----IPEH  219 (699)
Q Consensus       149 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~~~~  219 (699)
                                       .++..+....++|++|+|++|++++..+..+    ..+ ++|++|++++|.+++.    ++..
T Consensus       157 -----------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~  219 (362)
T 3goz_A          157 -----------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI  219 (362)
T ss_dssp             -----------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             -----------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence                             1111122211256666666666654443322    233 3666666666666521    3333


Q ss_pred             HhhcCCCCcEEEccCCcCCccCc----ccccCCCCCcEEEccCCcCCcc-------CCccCcCCCCCceEECCCCcCcCc
Q 040184          220 LAMSCFNLEFLVLSENSLLGQLF----SKKNYLRKLVSLHLDANYFTGE-------IPKSLSNCSHLEGLYMSDNNLYGN  288 (699)
Q Consensus       220 ~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~l~~n~l~~~  288 (699)
                      +....++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+.       ++..+..+++|+.|++++|++.+.
T Consensus       220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            33223466666666666544322    2234455666666666653321       123455566666666666666544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=2e-22  Score=209.84  Aligned_cols=226  Identities=21%  Similarity=0.185  Sum_probs=110.9

Q ss_pred             EEccCCcCccccchhcCCCCCCCEEEcccCccccccch---hhhhCCC-CCCEEEcCCCcCcccCCCCCCCC-----CCC
Q 040184           83 VALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN---WLLENNT-NLNTLVLRNNSLSGPFRMPIQPH-----WHL  153 (699)
Q Consensus        83 L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~---~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-----~~L  153 (699)
                      ++++.|.+++.+|..+...++|++|++++|.+++..+.   ..+.+++ +|++|++++|.+.+..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            45666666666666666666677777777776643331   2235566 67777777766665444333332     566


Q ss_pred             CEEEccCccCCccCchhhhhc---C-CCCcEEeCcCCcccccCCcccc----C-CCCCCEEEccCCcCCCccchHHh---
Q 040184          154 DTLYVSKNFFQGNIPLEIGVY---F-PRLVYLNLSRNDFNGSIPSSIG----D-MNSLEALDLSHNQLTGEIPEHLA---  221 (699)
Q Consensus       154 ~~L~l~~n~i~~~~~~~~~~~---~-~~L~~L~L~~n~i~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~~~~~---  221 (699)
                      ++|++++|++++..+..+...   + ++|++|++++|.+++..+..+.    . .++|++|++++|.+++..+..+.   
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            666666666654444333321   2 4566666666666544433322    2 24566666666665532222111   


Q ss_pred             hcCC-CCcEEEccCCcCCccCcccc----cCC-CCCcEEEccCCcCCcc----CCccCcC-CCCCceEECCCCcCcCcCc
Q 040184          222 MSCF-NLEFLVLSENSLLGQLFSKK----NYL-RKLVSLHLDANYFTGE----IPKSLSN-CSHLEGLYMSDNNLYGNIP  290 (699)
Q Consensus       222 ~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~i~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~~  290 (699)
                      ...+ +|++|++++|.+.+..+..+    ..+ ++|++|++++|.+++.    ++..+.. .++|+.|++++|.+++..+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            1222 55555555555543333222    222 3555555555555431    1222222 2345555555555543322


Q ss_pred             h----hhhccCCCcEEeccCCc
Q 040184          291 A----WLGNLSSLYDIMMASNH  308 (699)
Q Consensus       291 ~----~~~~l~~L~~L~l~~n~  308 (699)
                      .    .+..+++|+.|++++|.
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHHhcCCCccEEEeccCC
Confidence            1    12333444444444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=8.3e-21  Score=186.72  Aligned_cols=189  Identities=20%  Similarity=0.253  Sum_probs=135.7

Q ss_pred             CccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCC
Q 040184          370 SIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDND  449 (699)
Q Consensus       370 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~  449 (699)
                      ..++++++++.++. +|..+.  ++++.|++++|++.+..+..|..+++|++|++++|.+++..+..+..          
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------   81 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD----------   81 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT----------
T ss_pred             CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc----------
Confidence            45677777777764 333333  56777888888877766777777778888888888777655554433          


Q ss_pred             CCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCc
Q 040184          450 DSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNN  529 (699)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  529 (699)
                                                                 +++|+.|++++|++++..+..|..+++|++|+|++|+
T Consensus        82 -------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  118 (251)
T 3m19_A           82 -------------------------------------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ  118 (251)
T ss_dssp             -------------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------------------------------------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc
Confidence                                                       3477778888888776666777777888888888888


Q ss_pred             CcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCC
Q 040184          530 LTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLP  609 (699)
Q Consensus       530 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~  609 (699)
                      +++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..+++++.+++++||+.|     
T Consensus       119 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c-----  193 (251)
T 3m19_A          119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC-----  193 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT-----
T ss_pred             CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC-----
Confidence            877666667777788888888888776666667777788888888888777777667777777777788888877     


Q ss_pred             C-CCCCCCCCC
Q 040184          610 D-CDVAAVPEA  619 (699)
Q Consensus       610 ~-c~~~~~~~~  619 (699)
                      + |+..+...|
T Consensus       194 ~~~~~~~l~~~  204 (251)
T 3m19_A          194 SRCEILYLSQW  204 (251)
T ss_dssp             TSTTHHHHHHH
T ss_pred             CccccHHHHHH
Confidence            4 554444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=2.7e-21  Score=196.65  Aligned_cols=227  Identities=19%  Similarity=0.172  Sum_probs=168.0

Q ss_pred             CCCCEEEcccCccccccchhh--hhCCCCCCEEEcCCCcCcccCCCCC--CCCCCCCEEEccCccCCccCc----hhhhh
Q 040184          102 HDLEYVDFSDSNLKGEFLNWL--LENNTNLNTLVLRNNSLSGPFRMPI--QPHWHLDTLYVSKNFFQGNIP----LEIGV  173 (699)
Q Consensus       102 ~~L~~L~ls~n~~~~~~~~~~--~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~~~~  173 (699)
                      ..++.+.+.++.+.+.....+  +..+++|++|++++|.+.+..+..+  ..+++|++|++++|++++..+    ..+. 
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence            457888888887763222111  1245779999999999998888887  889999999999999986544    2233 


Q ss_pred             cCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCc--cch-HHhhcCCCCcEEEccCCcCCccCc--c-cccC
Q 040184          174 YFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGE--IPE-HLAMSCFNLEFLVLSENSLLGQLF--S-KKNY  247 (699)
Q Consensus       174 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~-~~~~~l~~L~~L~L~~n~l~~~~~--~-~~~~  247 (699)
                      .+++|++|++++|.+.+..+..++.+++|++|++++|++.+.  ++. ..+..+++|++|++++|.+.....  . .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            478999999999999888888999999999999999987642  222 222467888888888888853211  1 2466


Q ss_pred             CCCCcEEEccCCcCCccCCccCcCC---CCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCc
Q 040184          248 LRKLVSLHLDANYFTGEIPKSLSNC---SHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQ  324 (699)
Q Consensus       248 l~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  324 (699)
                      +++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.|++++|++++. |. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            7888888888888887667666665   58888888888887 4555553  6788888888887753 32 56677788


Q ss_pred             EEEcccccCc
Q 040184          325 ILDLSENNIS  334 (699)
Q Consensus       325 ~L~l~~n~i~  334 (699)
                      .|++++|+++
T Consensus       298 ~L~L~~N~l~  307 (310)
T 4glp_A          298 NLTLDGNPFL  307 (310)
T ss_dssp             CEECSSTTTS
T ss_pred             EEECcCCCCC
Confidence            8888887775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3.3e-21  Score=188.16  Aligned_cols=196  Identities=14%  Similarity=0.069  Sum_probs=138.1

Q ss_pred             cccEEEccCCcCccccchhcCCCCCCCEEEcccCc-cccccchhhhhCCCCCCEEEcCC-CcCcccCCCCCCCCCCCCEE
Q 040184           79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSN-LKGEFLNWLLENNTNLNTLVLRN-NSLSGPFRMPIQPHWHLDTL  156 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~-~~~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L  156 (699)
                      +|++|++++|.+++..+..|.++++|++|++++|. ++ .++...|.++++|++|++++ |.+++..+..|..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            67888888888877777778888888888888886 66 55555567788888888887 78877766777778888888


Q ss_pred             EccCccCCccCchhhhhcCCCCc---EEeCcCC-cccccCCccccCCCCCC-EEEccCCcCCCccchHHhhcCCCCcEEE
Q 040184          157 YVSKNFFQGNIPLEIGVYFPRLV---YLNLSRN-DFNGSIPSSIGDMNSLE-ALDLSHNQLTGEIPEHLAMSCFNLEFLV  231 (699)
Q Consensus       157 ~l~~n~i~~~~~~~~~~~~~~L~---~L~L~~n-~i~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~L~  231 (699)
                      ++++|++++ +|.  +..+++|+   +|++++| .+++..+..|..+++|+ +|++++|.++ .+|...+.. ++|++|+
T Consensus       111 ~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~  185 (239)
T 2xwt_C          111 GIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVY  185 (239)
T ss_dssp             EEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEE
T ss_pred             eCCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEE
Confidence            888888773 564  33356666   7788777 77766666677777777 7888777777 777666543 6677777


Q ss_pred             ccCCc-CCccCcccccCC-CCCcEEEccCCcCCccCCccCcCCCCCceEECCCC
Q 040184          232 LSENS-LLGQLFSKKNYL-RKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDN  283 (699)
Q Consensus       232 L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  283 (699)
                      +++|. +.+..+..|..+ ++|++|++++|.+++. |..  .+++|+.|+++++
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence            77773 665555666666 6677777777666633 322  4556666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=3.4e-22  Score=206.23  Aligned_cols=202  Identities=22%  Similarity=0.244  Sum_probs=96.5

Q ss_pred             cccEEEccCCcCccccchhcCCCCCCCEEEcccCccccc-cchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEE
Q 040184           79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGE-FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLY  157 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  157 (699)
                      ++++|++++|.+.+..+. +..+++|++|++++|.+++. ++. .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            456666666665554443 33456666666666665543 332 235566666666666655544444455555555555


Q ss_pred             ccCc-cCCccCchhhhhcCCCCcEEeCcCC-ccccc-CCccccCCC-CCCEEEccCC--cCC-CccchHHhhcCCCCcEE
Q 040184          158 VSKN-FFQGNIPLEIGVYFPRLVYLNLSRN-DFNGS-IPSSIGDMN-SLEALDLSHN--QLT-GEIPEHLAMSCFNLEFL  230 (699)
Q Consensus       158 l~~n-~i~~~~~~~~~~~~~~L~~L~L~~n-~i~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~~~~~l~~L~~L  230 (699)
                      +++| .+++.........+++|++|++++| .+++. .+..+..++ +|++|++++|  .++ +.++..+ ..+++|++|
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L  227 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV-RRCPNLVHL  227 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH-HHCTTCSEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH-hhCCCCCEE
Confidence            5555 3443211222223455555555555 55432 344444555 5555555555  232 1223222 235555555


Q ss_pred             EccCCc-CCccCcccccCCCCCcEEEccCCc-CCccCCccCcCCCCCceEECCCC
Q 040184          231 VLSENS-LLGQLFSKKNYLRKLVSLHLDANY-FTGEIPKSLSNCSHLEGLYMSDN  283 (699)
Q Consensus       231 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n  283 (699)
                      ++++|. +.+..+..+..+++|++|++++|. +.......++.+++|+.|++++|
T Consensus       228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            555554 333334444444555555555442 11111113444444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=5.1e-22  Score=208.88  Aligned_cols=241  Identities=18%  Similarity=0.214  Sum_probs=138.1

Q ss_pred             cchhcCCCCCCCEEEcccCccccccchhh---hhCCCCCCEEEcCCCcC---cccCCCCC-------CCCCCCCEEEccC
Q 040184           94 FPKFLYNQHDLEYVDFSDSNLKGEFLNWL---LENNTNLNTLVLRNNSL---SGPFRMPI-------QPHWHLDTLYVSK  160 (699)
Q Consensus        94 ~~~~l~~~~~L~~L~ls~n~~~~~~~~~~---~~~l~~L~~L~Ls~n~i---~~~~~~~~-------~~l~~L~~L~l~~  160 (699)
                      ++..+..+++|++|++++|.+++..+..+   +..+++|++|+|++|.+   .+..|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            33445555666666666666654433221   24556666666666432   22222222       4556666666666


Q ss_pred             ccCCc----cCchhhhhcCCCCcEEeCcCCcccccCCcccc----CC---------CCCCEEEccCCcCC-Cccch--HH
Q 040184          161 NFFQG----NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG----DM---------NSLEALDLSHNQLT-GEIPE--HL  220 (699)
Q Consensus       161 n~i~~----~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~----~l---------~~L~~L~L~~n~l~-~~~~~--~~  220 (699)
                      |.+++    .+|..+.. +++|++|+|++|.++...+..+.    .+         ++|++|++++|.++ +.++.  ..
T Consensus       104 n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             CCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            66654    23333433 56677777777766543333222    22         67777777777765 22332  22


Q ss_pred             hhcCCCCcEEEccCCcCCc-----cCcccccCCCCCcEEEccCCcCC----ccCCccCcCCCCCceEECCCCcCcCc---
Q 040184          221 AMSCFNLEFLVLSENSLLG-----QLFSKKNYLRKLVSLHLDANYFT----GEIPKSLSNCSHLEGLYMSDNNLYGN---  288 (699)
Q Consensus       221 ~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~l~~n~l~~~---  288 (699)
                      +..+++|++|++++|.+..     ..+..+..+++|++|++++|.++    ..++..+..+++|+.|++++|.+++.   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            3356677777777776652     23335666777777777777764    34556666777777777777776644   


Q ss_pred             -Cchhhhc--cCCCcEEeccCCcccc----cCCccc-cCCCCCcEEEcccccCcc
Q 040184          289 -IPAWLGN--LSSLYDIMMASNHLQG----PIPLEF-CQLNYLQILDLSENNISG  335 (699)
Q Consensus       289 -~~~~~~~--l~~L~~L~l~~n~~~~----~~~~~~-~~l~~L~~L~l~~n~i~~  335 (699)
                       ++..+..  +++|+.|++++|.+.+    .+|..+ .++++|+.|++++|.+.+
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence             3344432  6677777777777665    245544 446777777777776664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=9e-21  Score=185.05  Aligned_cols=178  Identities=15%  Similarity=0.195  Sum_probs=78.7

Q ss_pred             CCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCcc-CCccCchhhhhcCCCCcEEeCcC-CcccccCCccccCCCCCCEE
Q 040184          128 NLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNF-FQGNIPLEIGVYFPRLVYLNLSR-NDFNGSIPSSIGDMNSLEAL  205 (699)
Q Consensus       128 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L  205 (699)
                      +|++|++++|++++..+..+..+++|++|++++|+ ++ .++...+..+++|++|++++ |.+++..+..|..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            34444444444444333344444444444444443 33 23333333344444444444 44444444444455555555


Q ss_pred             EccCCcCCCccchHHhhcCCCCc---EEEccCC-cCCccCcccccCCCCCc-EEEccCCcCCccCCccCcCCCCCceEEC
Q 040184          206 DLSHNQLTGEIPEHLAMSCFNLE---FLVLSEN-SLLGQLFSKKNYLRKLV-SLHLDANYFTGEIPKSLSNCSHLEGLYM  280 (699)
Q Consensus       206 ~L~~n~l~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~L~l  280 (699)
                      ++++|.++ .+|.  +..+++|+   +|++++| .+.+..+..|..+++|+ +|++++|.++...+..+.. ++|+.|++
T Consensus       111 ~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          111 GIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred             eCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence            55555544 3443  22344444   4445444 44433334444445555 5555555544322233333 44555555


Q ss_pred             CCCc-CcCcCchhhhcc-CCCcEEeccCCccc
Q 040184          281 SDNN-LYGNIPAWLGNL-SSLYDIMMASNHLQ  310 (699)
Q Consensus       281 ~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~~~  310 (699)
                      ++|+ +++..+..|.++ ++|+.|++++|+++
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            5552 443333444444 44555555554444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=5.2e-22  Score=208.85  Aligned_cols=246  Identities=18%  Similarity=0.184  Sum_probs=120.1

Q ss_pred             ccccCCCCCcEEEcccCcccccccccc--CCCCCccccEEEccCCc---Cccccchhc-------CCCCCCCEEEcccCc
Q 040184           46 EPFFNNSKLKVFSGECNEIFVESESSH--SMTPKFQLESVALSGSG---IHATFPKFL-------YNQHDLEYVDFSDSN  113 (699)
Q Consensus        46 ~~~~~l~~L~~L~L~~n~~~~~~~~~~--~~~~~~~L~~L~ls~~~---i~~~~~~~l-------~~~~~L~~L~ls~n~  113 (699)
                      ..+..+++|+.|++++|.+........  .+..+++|++|++++|.   +++.+|..+       ..+++|++|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            346667778888888777655422211  12334467777777653   333334333       566666666766666


Q ss_pred             ccc----ccchhhhhCCCCCCEEEcCCCcCcccCCCCC----CCC---------CCCCEEEccCccCCc-cCch--hhhh
Q 040184          114 LKG----EFLNWLLENNTNLNTLVLRNNSLSGPFRMPI----QPH---------WHLDTLYVSKNFFQG-NIPL--EIGV  173 (699)
Q Consensus       114 ~~~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----~~l---------~~L~~L~l~~n~i~~-~~~~--~~~~  173 (699)
                      +++    .++..+ ..+++|++|+|++|.+....+..+    ..+         ++|++|++++|+++. .++.  ..+.
T Consensus       106 l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          106 FGPTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CCTTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            664    233333 566666666666666643222111    112         455555555555541 1221  1112


Q ss_pred             cCCCCcEEeCcCCcccc-----cCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCC
Q 040184          174 YFPRLVYLNLSRNDFNG-----SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYL  248 (699)
Q Consensus       174 ~~~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  248 (699)
                      .+++|++|++++|+++.     ..+..+..+++|++|++++|.++...                     ...++..+..+
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---------------------~~~l~~~l~~~  243 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---------------------SSALAIALKSW  243 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---------------------HHHHHHHGGGC
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---------------------HHHHHHHHccC
Confidence            24455555555555441     12224444455555555555443000                     02333444445


Q ss_pred             CCCcEEEccCCcCCcc----CCccCc--CCCCCceEECCCCcCcC----cCchhh-hccCCCcEEeccCCcccccC
Q 040184          249 RKLVSLHLDANYFTGE----IPKSLS--NCSHLEGLYMSDNNLYG----NIPAWL-GNLSSLYDIMMASNHLQGPI  313 (699)
Q Consensus       249 ~~L~~L~L~~n~i~~~----~~~~~~--~l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~~~~~~  313 (699)
                      ++|++|++++|.+++.    ++.++.  .+++|+.|++++|.+++    .+|..+ .++++|+.|++++|.+.+..
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            5555555555555432    233332  25555555555555554    244444 33556666666666555433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=1.2e-21  Score=202.12  Aligned_cols=251  Identities=16%  Similarity=0.153  Sum_probs=162.1

Q ss_pred             ccEEEccCCcCccccchhcCCC--CCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCccc-CCCCCCCCCCCCEE
Q 040184           80 LESVALSGSGIHATFPKFLYNQ--HDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTL  156 (699)
Q Consensus        80 L~~L~ls~~~i~~~~~~~l~~~--~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L  156 (699)
                      ++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. + ..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            567777776664   3445555  6777777777777755444 2 4677777777777776654 55556777777777


Q ss_pred             EccCccCCccCchhhhhcCCCCcEEeCcCC-ccccc-CCccccCCCCCCEEEccCC-cCCCc-cchHHhhcCC-CCcEEE
Q 040184          157 YVSKNFFQGNIPLEIGVYFPRLVYLNLSRN-DFNGS-IPSSIGDMNSLEALDLSHN-QLTGE-IPEHLAMSCF-NLEFLV  231 (699)
Q Consensus       157 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~l~-~L~~L~  231 (699)
                      ++++|.+++..+..+.. +++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++.. +..++ +|++|+
T Consensus       124 ~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~  201 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLN  201 (336)
T ss_dssp             ECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEE
T ss_pred             eCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEE
Confidence            77777776555655554 677777777777 56542 4555667777777777777 66633 3333 34577 777777


Q ss_pred             ccCC--cCC-ccCcccccCCCCCcEEEccCCc-CCccCCccCcCCCCCceEECCCCc-CcCcCchhhhccCCCcEEeccC
Q 040184          232 LSEN--SLL-GQLFSKKNYLRKLVSLHLDANY-FTGEIPKSLSNCSHLEGLYMSDNN-LYGNIPAWLGNLSSLYDIMMAS  306 (699)
Q Consensus       232 L~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~  306 (699)
                      +++|  .+. +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+.++++|+.|++++
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  281 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  281 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence            7777  343 3445556667777777777777 555556667777777777777774 3222223566777777777777


Q ss_pred             CcccccCCccccCC-CCCcEEEcccccCcccCCCCC
Q 040184          307 NHLQGPIPLEFCQL-NYLQILDLSENNISGSLPSCS  341 (699)
Q Consensus       307 n~~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~  341 (699)
                      | +..   ..+..+ ..+..|++++|.+++..|...
T Consensus       282 ~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          282 I-VPD---GTLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             S-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             c-cCH---HHHHHHHhhCcceEEecccCccccCCcc
Confidence            7 322   222322 235556677777776666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=3.2e-20  Score=188.14  Aligned_cols=195  Identities=15%  Similarity=0.183  Sum_probs=151.9

Q ss_pred             ccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCC
Q 040184           23 LIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQH  102 (699)
Q Consensus        23 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~  102 (699)
                      +..+++|++|++++|.++ .++  .+..+++|+.|++++|.+.....    +..+++|++|++++|.+++.  ..+..++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~--~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~~~--~~~~~l~  107 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNV--SAIAGLQ  107 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCC--GGGTTCT
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch--hhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCCCc--hhhcCCC
Confidence            456788888888888886 444  47778888888888888766543    34555888888888888764  3688888


Q ss_pred             CCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEe
Q 040184          103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN  182 (699)
Q Consensus       103 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~  182 (699)
                      +|++|++++|.+++ ++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|++++ ++.  +..+++|++|+
T Consensus       108 ~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~  179 (308)
T 1h6u_A          108 SIKTLDLTSTQITD-VTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLK  179 (308)
T ss_dssp             TCCEEECTTSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEE
T ss_pred             CCCEEECCCCCCCC-chh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEE
Confidence            99999999998874 544  5788899999999998886544  7788899999999998874 444  44578999999


Q ss_pred             CcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCc
Q 040184          183 LSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG  239 (699)
Q Consensus       183 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  239 (699)
                      +++|.+++..+  +..+++|++|++++|.++ .++.  +..+++|++|++++|.+.+
T Consensus       180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~-~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          180 ADDNKISDISP--LASLPNLIEVHLKNNQIS-DVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCSSCCCCCGG--GGGCTTCCEEECTTSCCC-BCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCccCcChh--hcCCCCCCEEEccCCccC-cccc--ccCCCCCCEEEccCCeeec
Confidence            99999885433  788899999999999998 5553  4578999999999998864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=2.7e-20  Score=189.29  Aligned_cols=225  Identities=17%  Similarity=0.160  Sum_probs=158.2

Q ss_pred             CCCEEEccCccCCccCchhhh--hcCCCCcEEeCcCCcccccCCccc--cCCCCCCEEEccCCcCCCccc---hHHhhcC
Q 040184          152 HLDTLYVSKNFFQGNIPLEIG--VYFPRLVYLNLSRNDFNGSIPSSI--GDMNSLEALDLSHNQLTGEIP---EHLAMSC  224 (699)
Q Consensus       152 ~L~~L~l~~n~i~~~~~~~~~--~~~~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~---~~~~~~l  224 (699)
                      .++.+.+.++.++......+.  ..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+   ...+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            456666666665422111111  114679999999999998888888  889999999999999986444   2222368


Q ss_pred             CCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCcc--C--CccCcCCCCCceEECCCCcCcCcCch----hhhcc
Q 040184          225 FNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGE--I--PKSLSNCSHLEGLYMSDNNLYGNIPA----WLGNL  296 (699)
Q Consensus       225 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l  296 (699)
                      ++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .  +..+..+++|++|++++|+++. .+.    .+..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence            8999999999999888888888999999999999987642  1  2334678899999999998863 222    35677


Q ss_pred             CCCcEEeccCCcccccCCccccCC---CCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccE
Q 040184          297 SSLYDIMMASNHLQGPIPLEFCQL---NYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVT  373 (699)
Q Consensus       297 ~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  373 (699)
                      ++|++|++++|++.+..|..+..+   ++|++|++++|.++ .+|...                          .++|++
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--------------------------~~~L~~  276 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL--------------------------PAKLRV  276 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC--------------------------CSCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh--------------------------cCCCCE
Confidence            889999999999887777766665   58888888888887 333222                          134555


Q ss_pred             EECCCCCCCCCcChhhhcCCCCCEEEcccCcCC
Q 040184          374 LDLSYNSFSGYIPYWIERLTYLRYLILANNNLE  406 (699)
Q Consensus       374 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  406 (699)
                      |++++|++++. |. +..+++|+.|++++|+++
T Consensus       277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             EECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            55555555543 21 345556666666666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=7.6e-20  Score=185.40  Aligned_cols=191  Identities=23%  Similarity=0.277  Sum_probs=95.7

Q ss_pred             CCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEE
Q 040184          126 NTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEAL  205 (699)
Q Consensus       126 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  205 (699)
                      +++|++|++++|.+... + .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+++.  ..+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            34444444444444331 1 2334444444444444443 2222  22244455555555554422  234455555555


Q ss_pred             EccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcC
Q 040184          206 DLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL  285 (699)
Q Consensus       206 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  285 (699)
                      ++++|.++ .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|++
T Consensus       113 ~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          113 DLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             ECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             ECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence            55555554 3332  2345555555555555543322  4455566666666665553222  55666666666666666


Q ss_pred             cCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCc
Q 040184          286 YGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS  334 (699)
Q Consensus       286 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~  334 (699)
                      ++..+  +..+++|+.|++++|++.+..  .+..+++|+.|++++|.++
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            54322  555666666666666665433  2556666666666666665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=1.6e-20  Score=180.24  Aligned_cols=120  Identities=22%  Similarity=0.331  Sum_probs=70.2

Q ss_pred             cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecc
Q 040184          495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA  574 (699)
Q Consensus       495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  574 (699)
                      +|+.|+|++|.+++..|..|.++++|++|+|++|+++++.+..|..+++|++|+|++|++++..|..|..+++|++|+++
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence            44445555555554445555556666666666666665555555566666666666666665555566666666666666


Q ss_pred             cCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 040184          575 HNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEA  619 (699)
Q Consensus       575 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~  619 (699)
                      +|++++..+..+..+++++.+++++|||.|     +|+..|...|
T Consensus       137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c-----~c~l~~l~~~  176 (220)
T 2v9t_B          137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFIC-----DCHLKWLADY  176 (220)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCEEC-----SGGGHHHHHH
T ss_pred             CCcCCEECHHHHhCCCCCCEEEeCCCCcCC-----CCccHHHHHH
Confidence            666665555555555666666666666666     5655544333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.6e-19  Score=186.73  Aligned_cols=244  Identities=18%  Similarity=0.136  Sum_probs=158.4

Q ss_pred             CEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcE-EEc
Q 040184          154 DTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF-LVL  232 (699)
Q Consensus       154 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~L  232 (699)
                      ++++.++++++ .+|..+.   +++++|+|++|+|+.+.+.+|.++++|++|+|++|.+.+.+|..+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56777888887 6777663   478888888888886666678888888888888888765677666666666554 444


Q ss_pred             cCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCccccc
Q 040184          233 SENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGP  312 (699)
Q Consensus       233 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  312 (699)
                      +.|++....+..|..+++|++|++++|+++...+..+....++..|++.++                       +.+...
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l  144 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI  144 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence            556666555666666666666666666666444444444444555555332                       223322


Q ss_pred             CCccccCCC-CCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhc
Q 040184          313 IPLEFCQLN-YLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIER  391 (699)
Q Consensus       313 ~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  391 (699)
                      .+..|..+. .++.|++++|.++...+..+...+++++++.+++..+.++.++|..+++|++|++++|+++...+..   
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---  221 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---  221 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence            233333332 4566666666666555555555666677766544445666666888999999999999998665544   


Q ss_pred             CCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCc
Q 040184          392 LTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN  428 (699)
Q Consensus       392 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~  428 (699)
                      +.+|+.|.+.++.-...+| .+..+++|+.++++++.
T Consensus       222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            4566677666654333556 47889999999997654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=3.3e-19  Score=184.47  Aligned_cols=238  Identities=16%  Similarity=0.111  Sum_probs=135.9

Q ss_pred             CEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcE-EeC
Q 040184          105 EYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY-LNL  183 (699)
Q Consensus       105 ~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~-L~L  183 (699)
                      ++++.+++.++ ++|..+   .+++++|+|++|+++.+.+.+|.++++|++|++++|++.+.+|...+..++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45555666665 555443   2456667777776666555666677777777777777655566666555666554 455


Q ss_pred             cCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccC-CcCCccCcccccCCC-CCcEEEccCCcC
Q 040184          184 SRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE-NSLLGQLFSKKNYLR-KLVSLHLDANYF  261 (699)
Q Consensus       184 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~i  261 (699)
                      ..|++..+.|..|..+++|++|++++|.++ .++...+....++..+++.+ +.+....+..|..+. .++.|++++|++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            567777666777777777777777777776 55544443455666666654 344444444455443 466677777777


Q ss_pred             CccCCccCcCCCCCceEECCC-CcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCC
Q 040184          262 TGEIPKSLSNCSHLEGLYMSD-NNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC  340 (699)
Q Consensus       262 ~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  340 (699)
                      +.+.+.+| ...+|+.|++++ |.++...+..|.++++|+.|++++|+++...+..+   .+|+.|.+.++.-...+|..
T Consensus       167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l  242 (350)
T 4ay9_X          167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTL  242 (350)
T ss_dssp             CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCT
T ss_pred             cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCc
Confidence            64433333 345666777653 45554444456666677777777776664433333   33444443333222233333


Q ss_pred             CCCCCccEEEc
Q 040184          341 SSHSSITQVHL  351 (699)
Q Consensus       341 ~~~~~L~~L~l  351 (699)
                      ..+++|+.+++
T Consensus       243 ~~l~~L~~l~l  253 (350)
T 4ay9_X          243 EKLVALMEASL  253 (350)
T ss_dssp             TTCCSCCEEEC
T ss_pred             hhCcChhhCcC
Confidence            33444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=5.3e-20  Score=176.60  Aligned_cols=155  Identities=25%  Similarity=0.292  Sum_probs=82.7

Q ss_pred             cEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCC-cccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCC
Q 040184          372 VTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVP-IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDD  450 (699)
Q Consensus       372 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~  450 (699)
                      +.+++++|.++. +|..+.  +.+++|++++|++++..+ ..|..+++|++|++++|.+++..+..+..           
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            456666666654 333222  345566666666664432 33555666666666666655444433332           


Q ss_pred             CCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcC
Q 040184          451 SLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNL  530 (699)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  530 (699)
                                                                +++|+.|+|++|.+++..+..|..+++|++|+|++|++
T Consensus        80 ------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  117 (220)
T 2v70_A           80 ------------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI  117 (220)
T ss_dssp             ------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred             ------------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence                                                      22555555555555554444555555555555555555


Q ss_pred             cccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccC
Q 040184          531 TGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKI  582 (699)
Q Consensus       531 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  582 (699)
                      ++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++.+.+
T Consensus       118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            5555555555555555555555555554555555555555555555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=6.3e-19  Score=167.91  Aligned_cols=162  Identities=23%  Similarity=0.274  Sum_probs=136.5

Q ss_pred             CCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCC
Q 040184          368 RSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGD  447 (699)
Q Consensus       368 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~  447 (699)
                      .+++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..        
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------   98 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK--------   98 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC--------
Confidence            457888899988888777777888899999999999998776777888999999999999987655544433        


Q ss_pred             CCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccC
Q 040184          448 NDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSH  527 (699)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  527 (699)
                                                                   +++|++|++++|.+++..+..|..+++|++|++++
T Consensus        99 ---------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A           99 ---------------------------------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             ---------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ---------------------------------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence                                                         45899999999999977777789999999999999


Q ss_pred             CcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCC
Q 040184          528 NNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQF  589 (699)
Q Consensus       528 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  589 (699)
                      |++++..+..+..+++|++|++++|.+.+       .+++|++|+++.|++++.+|..++.+
T Consensus       134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             CccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            99998888789999999999999998874       45679999999999999999876544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=9.1e-20  Score=189.39  Aligned_cols=110  Identities=22%  Similarity=0.215  Sum_probs=54.1

Q ss_pred             cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCccc---ccCCCCCee
Q 040184          495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQL---VELNALAFF  571 (699)
Q Consensus       495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L  571 (699)
                      +|+.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+   ..+++|+.|
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L  168 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL  168 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence            45555555555554444445555555555555555555555555555555555555555553322223   345555555


Q ss_pred             ecccCcCcccCCCCCcCCCC--CCCCccCCCCCCC
Q 040184          572 SVAHNNLSGKIPEWTAQFTT--FKEDSYEGNPLLC  604 (699)
Q Consensus       572 ~l~~N~l~~~~~~~~~~~~~--l~~~~~~~Np~~C  604 (699)
                      ++++|+++...+..+..++.  ++.+.+.+|||.|
T Consensus       169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            55555555433333323332  2445555555555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=2.1e-19  Score=195.32  Aligned_cols=82  Identities=23%  Similarity=0.339  Sum_probs=41.7

Q ss_pred             cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCC-------CEEeCCCCcccccCCcccccCCC
Q 040184          495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV-------ESLDISYNNLNGKIPPQLVELNA  567 (699)
Q Consensus       495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~  567 (699)
                      +|+.|++++|.+++ +|. |.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ .+|..+..+++
T Consensus       161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~  231 (571)
T 3cvr_A          161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP  231 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred             CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence            45555555555554 333 33  55555555555555 3333 332  44       55566666555 34555555555


Q ss_pred             CCeeecccCcCcccCCCC
Q 040184          568 LAFFSVAHNNLSGKIPEW  585 (699)
Q Consensus       568 L~~L~l~~N~l~~~~~~~  585 (699)
                      |+.|++++|++++.+|..
T Consensus       232 L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          232 TCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             TEEEECCSSSCCHHHHHH
T ss_pred             CCEEEeeCCcCCCcCHHH
Confidence            666666666555554443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1.4e-18  Score=166.74  Aligned_cols=156  Identities=22%  Similarity=0.243  Sum_probs=128.9

Q ss_pred             cEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCC
Q 040184          372 VTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDS  451 (699)
Q Consensus       372 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~  451 (699)
                      +.++++++.++.+ |..+.  ++++.|++++|++++..+..|..+++|+.|++++|++++..|..+..            
T Consensus        14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------   78 (220)
T 2v9t_B           14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------   78 (220)
T ss_dssp             TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred             CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence            5677888777743 43333  67888888888888777778888888999999999888777766654            


Q ss_pred             CcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCc
Q 040184          452 LVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLT  531 (699)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  531 (699)
                                                               +++|++|+|++|.++...+..|..+++|++|+|++|+++
T Consensus        79 -----------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           79 -----------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             -----------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -----------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence                                                     348888999999998776777889999999999999999


Q ss_pred             ccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCC
Q 040184          532 GVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP  583 (699)
Q Consensus       532 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~  583 (699)
                      +..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.++
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            8888999999999999999999998777788899999999999999987554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.3e-18  Score=166.91  Aligned_cols=164  Identities=18%  Similarity=0.245  Sum_probs=136.3

Q ss_pred             CEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCC-ccccCCccCCCCCCCCCcccccccccccccCCCCccccc
Q 040184          396 RYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPG-CLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKE  474 (699)
Q Consensus       396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (699)
                      +.+++++|.++. +|..+.  +.++.|++++|.+++..+. .+..                                   
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~-----------------------------------   55 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKK-----------------------------------   55 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGG-----------------------------------
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhcc-----------------------------------
Confidence            588999999884 555443  4578999999998876442 2332                                   


Q ss_pred             ceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcc
Q 040184          475 ESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL  554 (699)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  554 (699)
                                        +++|+.|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++
T Consensus        56 ------------------l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  117 (220)
T 2v70_A           56 ------------------LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI  117 (220)
T ss_dssp             ------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred             ------------------CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence                              45889999999999988777899999999999999999988888899999999999999999


Q ss_pred             cccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184          555 NGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS  620 (699)
Q Consensus       555 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~  620 (699)
                      ++..|..|..+++|++|++++|++++..|..+..+++++.+++++||+.|     +|+..|...|.
T Consensus       118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c-----~c~l~~l~~~~  178 (220)
T 2v70_A          118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC-----NCYLAWLGEWL  178 (220)
T ss_dssp             CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC-----SGGGHHHHHHH
T ss_pred             CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC-----CCchHHHHHHH
Confidence            98888889999999999999999998888888888899999999999999     78876665554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=1.9e-18  Score=166.88  Aligned_cols=156  Identities=22%  Similarity=0.236  Sum_probs=100.9

Q ss_pred             ccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCC
Q 040184          371 IVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDD  450 (699)
Q Consensus       371 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~  450 (699)
                      .+.++++++.++.. |..+.  ++|++|++++|++++..+..|..+++|++|++++|++.+..+..+..           
T Consensus        21 ~~~v~c~~~~l~~i-p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~-----------   86 (229)
T 3e6j_A           21 GTTVDCRSKRHASV-PAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS-----------   86 (229)
T ss_dssp             TTEEECTTSCCSSC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEeEccCCCcCcc-CCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence            45677777777643 33222  67777888887777766777777777777777777775443333322           


Q ss_pred             CCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcC
Q 040184          451 SLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNL  530 (699)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  530 (699)
                                                                +++|+.|+|++|++++..+..|..+++|++|+|++|++
T Consensus        87 ------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           87 ------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             ------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence                                                      34666666766666655555566666666666666666


Q ss_pred             cccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCC
Q 040184          531 TGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP  583 (699)
Q Consensus       531 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~  583 (699)
                      + .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.++
T Consensus       125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            6 455566666666666666666665555556666666666666666665544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=2.3e-18  Score=164.03  Aligned_cols=155  Identities=23%  Similarity=0.269  Sum_probs=81.6

Q ss_pred             CCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEc
Q 040184          177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHL  256 (699)
Q Consensus       177 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  256 (699)
                      ++++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            4555555555555444444555555555555555555 444444444555555555555555444444555555555555


Q ss_pred             cCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCccc
Q 040184          257 DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGS  336 (699)
Q Consensus       257 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~  336 (699)
                      ++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+.       +.+++|+.|+++.|.+.+.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCce
Confidence            555555444444555555555555555555444444555555555555555443       2334555555555555554


Q ss_pred             CCC
Q 040184          337 LPS  339 (699)
Q Consensus       337 ~~~  339 (699)
                      +|.
T Consensus       181 ip~  183 (208)
T 2o6s_A          181 VRN  183 (208)
T ss_dssp             BBC
T ss_pred             eec
Confidence            443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=8.5e-18  Score=162.33  Aligned_cols=153  Identities=22%  Similarity=0.304  Sum_probs=112.7

Q ss_pred             CCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCccccc
Q 040184          395 LRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKE  474 (699)
Q Consensus       395 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (699)
                      -+.+++++++++ .+|..+.  ++|++|++++|.+++..|..+..                                   
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~-----------------------------------   62 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDS-----------------------------------   62 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT-----------------------------------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhC-----------------------------------
Confidence            456777777776 4444332  67788888888877666655543                                   


Q ss_pred             ceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcc
Q 040184          475 ESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL  554 (699)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  554 (699)
                                        +++|+.|+|++|+++...+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++
T Consensus        63 ------------------l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           63 ------------------LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             ------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ------------------ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence                              34777888888888766666677788888888888888777777777788888888888888


Q ss_pred             cccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCC
Q 040184          555 NGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC  604 (699)
Q Consensus       555 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C  604 (699)
                      + .+|..+..+++|++|++++|++++..+..+..+++++.+++.+||+.|
T Consensus       125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            7 667777778888888888888877666667777777888888888887

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=9.8e-18  Score=182.22  Aligned_cols=125  Identities=25%  Similarity=0.301  Sum_probs=57.5

Q ss_pred             CCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEc
Q 040184          177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHL  256 (699)
Q Consensus       177 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  256 (699)
                      +|++|++++|.+++ +|.   .+++|+.|++++|.++ .+|.    .+++|++|++++|.+.+ +|. +.  ++|+.|++
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L  187 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDV  187 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence            44444444444443 222   3344444444444444 2333    23444444444444443 222 32  44555555


Q ss_pred             cCCcCCccCCccCcCCCCC-------ceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccC
Q 040184          257 DANYFTGEIPKSLSNCSHL-------EGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQ  319 (699)
Q Consensus       257 ~~n~i~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  319 (699)
                      ++|.++ .+|. +..  +|       +.|++++|+++ .+|..+..+++|+.|++++|.+.+..|..+..
T Consensus       188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            555554 2333 332  34       55556555555 34444555556666666666555555554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.5e-17  Score=166.96  Aligned_cols=152  Identities=24%  Similarity=0.388  Sum_probs=120.0

Q ss_pred             ccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccC
Q 040184          365 FFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHN  444 (699)
Q Consensus       365 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~  444 (699)
                      +..+++|++|++++|++++..+  +..+++|++|++++|++++ . ..+..+++|++|++++|.+++. + .+.      
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~-~-~l~------  131 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI-N-GLV------  131 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC-G-GGG------
T ss_pred             HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC-h-hhc------
Confidence            5667788888888888876544  7788888888888888874 2 3478888888888888888642 1 121      


Q ss_pred             CCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEE
Q 040184          445 NGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALN  524 (699)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  524 (699)
                                                                     .+++|+.|++++|++++.  ..+..+++|++|+
T Consensus       132 -----------------------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  162 (291)
T 1h6t_A          132 -----------------------------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLS  162 (291)
T ss_dssp             -----------------------------------------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             -----------------------------------------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEE
Confidence                                                           245888899999988864  5788899999999


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCccc
Q 040184          525 LSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGK  581 (699)
Q Consensus       525 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  581 (699)
                      +++|++++..+  +..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++..
T Consensus       163 L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             ccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence            99999987654  8889999999999999985 44 488899999999999988753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=9.4e-18  Score=174.18  Aligned_cols=176  Identities=24%  Similarity=0.225  Sum_probs=94.3

Q ss_pred             CEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCcccc-CCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEc
Q 040184          154 DTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG-DMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVL  232 (699)
Q Consensus       154 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  232 (699)
                      +.++++++.++ .+|..+.   +.++.|+|++|.+++..+..+. .+++|++|++++|.++ .++...+..+++|++|+|
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence            34455555544 3444332   2455555555555555455454 5555666666666555 444444445555666666


Q ss_pred             cCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhh---hccCCCcEEeccCCcc
Q 040184          233 SENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWL---GNLSSLYDIMMASNHL  309 (699)
Q Consensus       233 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~~  309 (699)
                      ++|.+....+..|..+++|++|++++|.+++..+.+|..+++|+.|++++|++++..+..|   ..+++|+.|++++|++
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            6555555555555556666666666666655555556666666666666666654333333   3455666666666665


Q ss_pred             cccCCccccCCCC--CcEEEcccccCc
Q 040184          310 QGPIPLEFCQLNY--LQILDLSENNIS  334 (699)
Q Consensus       310 ~~~~~~~~~~l~~--L~~L~l~~n~i~  334 (699)
                      ....+..+..++.  ++.|++++|.+.
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CccCHHHhhhccHhhcceEEecCCCcc
Confidence            5444444444544  255555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=6.7e-17  Score=162.15  Aligned_cols=171  Identities=23%  Similarity=0.369  Sum_probs=85.3

Q ss_pred             hCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCC
Q 040184          124 ENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLE  203 (699)
Q Consensus       124 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~  203 (699)
                      ..+++|++|++++|.+...  ..+..+++|++|++++|++++ ++.  +..+++|++|++++|.+++ + ..+..+++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~  115 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK  115 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence            4566777777777766643  235556666666666666653 332  2235556666666666553 2 2255555555


Q ss_pred             EEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCC
Q 040184          204 ALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDN  283 (699)
Q Consensus       204 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  283 (699)
                      +|++++|.++ .++.  +..+++|++|++++|.+.+.                          ..+..+++|+.|++++|
T Consensus       116 ~L~L~~n~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--------------------------~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          116 SLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--------------------------TVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             EEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC--------------------------GGGGGCTTCSEEECCSS
T ss_pred             EEECCCCcCC-CChh--hcCCCCCCEEEccCCcCCcc--------------------------hhhccCCCCCEEEccCC
Confidence            5555555555 3321  12344444554444444332                          23444444444444444


Q ss_pred             cCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCc
Q 040184          284 NLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS  334 (699)
Q Consensus       284 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~  334 (699)
                      ++++..+  +..+++|+.|++++|.+.+. + .+..+++|+.|++++|++.
T Consensus       167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          167 QISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             ccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence            4443222  44444444444444444432 1 2444555555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=8.9e-17  Score=176.79  Aligned_cols=171  Identities=24%  Similarity=0.334  Sum_probs=87.0

Q ss_pred             CCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCE
Q 040184          125 NNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEA  204 (699)
Q Consensus       125 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  204 (699)
                      .+++|+.|++++|.+...  ..+..+++|+.|+|++|++++ ++.  +..+++|+.|+|++|.+.+ + ..+..+++|+.
T Consensus        41 ~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~  113 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS  113 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred             cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence            344444444444444432  124444455555555555442 222  2224555555555555543 2 24555555666


Q ss_pred             EEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCc
Q 040184          205 LDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNN  284 (699)
Q Consensus       205 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  284 (699)
                      |+|++|.+. .++.  +..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.
T Consensus       114 L~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          114 LSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             EECTTSCCC-CCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEecCCCCC-CCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence            666666555 3332  23455555555555555433  345555566666666666554433  5555666666666665


Q ss_pred             CcCcCchhhhccCCCcEEeccCCcccc
Q 040184          285 LYGNIPAWLGNLSSLYDIMMASNHLQG  311 (699)
Q Consensus       285 l~~~~~~~~~~l~~L~~L~l~~n~~~~  311 (699)
                      +.+.  ..+..+++|+.|++++|.+.+
T Consensus       187 i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          187 ISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             CCCC--hHHccCCCCCEEEccCCcCcC
Confidence            5542  235555666666666665553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.7e-17  Score=154.01  Aligned_cols=154  Identities=17%  Similarity=0.256  Sum_probs=120.4

Q ss_pred             cCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCC
Q 040184          366 FNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNN  445 (699)
Q Consensus       366 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~  445 (699)
                      ..+++|+.|++++|.++. ++ .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..      
T Consensus        41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred             hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence            456678888888888874 34 5788888999999988765  3346888889999999999887666655443      


Q ss_pred             CCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEc
Q 040184          446 GDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNL  525 (699)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  525 (699)
                                                                     +++|+.|++++|.+++..+..+..+++|++|++
T Consensus       111 -----------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A          111 -----------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             -----------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             -----------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence                                                           458888999999998777888899999999999


Q ss_pred             cCCc-CcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcc
Q 040184          526 SHNN-LTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG  580 (699)
Q Consensus       526 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  580 (699)
                      ++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++..
T Consensus       144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            9998 66 444 68889999999999999985 44 77888999999999998753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=1.2e-17  Score=156.25  Aligned_cols=121  Identities=24%  Similarity=0.398  Sum_probs=112.5

Q ss_pred             CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184          494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV  573 (699)
Q Consensus       494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  573 (699)
                      ++++.|++++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|++|+|++|+|++..|..|..+++|++|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            47899999999998 67789999999999999999999998899999999999999999999888889999999999999


Q ss_pred             ccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184          574 AHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS  620 (699)
Q Consensus       574 ~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~  620 (699)
                      ++|+++...+..+..++.++.+++++|||.|     +|+..|+..|.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C-----~c~l~~l~~~~  151 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC-----DCNMQWLSDWV  151 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC-----SGGGHHHHHHH
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeec-----CCcCHHHHHHH
Confidence            9999998888888889999999999999999     89887776665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1.2e-16  Score=175.90  Aligned_cols=192  Identities=21%  Similarity=0.322  Sum_probs=123.1

Q ss_pred             CcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCC
Q 040184          299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSY  378 (699)
Q Consensus       299 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~  378 (699)
                      +..+.+..+.+....+  +..+++|+.|++++|.+.. ++.                         +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~~-------------------------l~~l~~L~~L~Ls~   74 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQG-------------------------IQYLPNVTKLFLNG   74 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CTT-------------------------GGGCTTCCEEECTT
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-ChH-------------------------HccCCCCCEEEeeC
Confidence            3444455554443322  3456677777777776652 121                         55566777777777


Q ss_pred             CCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccc
Q 040184          379 NSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNH  458 (699)
Q Consensus       379 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (699)
                      |.+.+..+  +..+++|+.|+|++|++.+ ++ .+..+++|+.|++++|.+.+. + .+.                    
T Consensus        75 N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~-~l~--------------------  128 (605)
T 1m9s_A           75 NKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI-N-GLV--------------------  128 (605)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC-G-GGG--------------------
T ss_pred             CCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC-c-ccc--------------------
Confidence            77765444  6677777777777777763 22 566777777777777776532 1 111                    


Q ss_pred             cccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccc
Q 040184          459 NVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTF  538 (699)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  538 (699)
                                                       .+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +
T Consensus       129 ---------------------------------~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l  171 (605)
T 1m9s_A          129 ---------------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L  171 (605)
T ss_dssp             ---------------------------------GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred             ---------------------------------CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence                                             235677777777777754  557777777777777777776554  6


Q ss_pred             cCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCC
Q 040184          539 SNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP  583 (699)
Q Consensus       539 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~  583 (699)
                      ..+++|+.|+|++|+|++.  ..+..+++|+.|++++|++++...
T Consensus       172 ~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          172 AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             TTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             ccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence            7777777777777777743  356777777777777777765433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=1.9e-16  Score=148.19  Aligned_cols=129  Identities=26%  Similarity=0.357  Sum_probs=68.6

Q ss_pred             cEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCc-ccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCC
Q 040184          372 VTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPI-QLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDD  450 (699)
Q Consensus       372 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~  450 (699)
                      +.+++++|+++. +|..+.  .++++|++++|++++..+. .|..+++|++|++++|++++..|..+..           
T Consensus        11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------   76 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence            456666666653 333222  2566666666666544433 3555566666666666655544444332           


Q ss_pred             CCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcC
Q 040184          451 SLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNL  530 (699)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  530 (699)
                                                                +++|+.|++++|++++..+..|..+++|++|+|++|++
T Consensus        77 ------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  114 (192)
T 1w8a_A           77 ------------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             ------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred             ------------------------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence                                                      22555555555555555555555555555555555555


Q ss_pred             cccCCccccCCCCCCEEeCCCCcccc
Q 040184          531 TGVIPVTFSNLNQVESLDISYNNLNG  556 (699)
Q Consensus       531 ~~~~~~~~~~l~~L~~L~Ls~N~l~~  556 (699)
                      ++..|..|..+++|++|++++|.+.+
T Consensus       115 ~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          115 SCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            55555555555555555555555553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=2.2e-17  Score=154.71  Aligned_cols=121  Identities=21%  Similarity=0.334  Sum_probs=108.5

Q ss_pred             CcccEEEccCCccCccCCc-cccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeee
Q 040184          494 NKMYGVDLSCNKLTGEIPP-QISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFS  572 (699)
Q Consensus       494 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  572 (699)
                      .+++.|++++|.+++..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            3788999999999976664 489999999999999999999999999999999999999999988888899999999999


Q ss_pred             cccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 040184          573 VAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEA  619 (699)
Q Consensus       573 l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~  619 (699)
                      +++|++++..|..+..+++++.+++++||+.|     +|...|+..|
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c-----~c~l~~~~~~  150 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC-----NCHLAWFAEW  150 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC-----SGGGHHHHHH
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC-----cCcchHHHHH
Confidence            99999999999999889999999999999999     6766554443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.70  E-value=1.3e-15  Score=159.28  Aligned_cols=270  Identities=11%  Similarity=0.083  Sum_probs=211.0

Q ss_pred             ccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCC
Q 040184           23 LIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQH  102 (699)
Q Consensus        23 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~  102 (699)
                      +..+..++.+.+.++ ++ .++..+|.++ +|+.+++..+ +....  ..+|..+ +|+.+.+.+ .+..+.+.+|.+|+
T Consensus       109 ~~~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~--~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~  180 (401)
T 4fdw_A          109 TEILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIG--DMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCY  180 (401)
T ss_dssp             EEECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEEC--TTTTTTC-CCCEEECCT-TCCEECSSTTTTCT
T ss_pred             EEecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEEC--HHhcCCC-CceEEEeCC-CccEehHHHhhCcc
Confidence            445678888888765 43 5676778875 7888888776 43332  2233444 789999886 67777778899999


Q ss_pred             CCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEe
Q 040184          103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN  182 (699)
Q Consensus       103 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~  182 (699)
                      +|+.++++.|.++ .++...|. +++|+.+.+.. .+..+...+|..+++|+.+++..+ ++ .++...|.. .+|+.+.
T Consensus       181 ~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~  254 (401)
T 4fdw_A          181 NLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVK  254 (401)
T ss_dssp             TCCEEECTTSCCS-EECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEE
T ss_pred             cCCeeecCCCcce-EechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEE
Confidence            9999999998888 67777766 68999999974 477777888999999999999875 54 677777775 6899999


Q ss_pred             CcCCcccccCCccccCCCCCCEEEccCCcCC----CccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccC
Q 040184          183 LSRNDFNGSIPSSIGDMNSLEALDLSHNQLT----GEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDA  258 (699)
Q Consensus       183 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  258 (699)
                      + .+.++.+...+|.+|++|+.+++.++.+.    ..++...|.+|++|+.+++.. .+.......|.++.+|+.+.+..
T Consensus       255 l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          255 L-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             E-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred             e-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence            9 45566677888999999999999887653    247888888999999999984 57767778899999999999966


Q ss_pred             CcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccC-CCcEEeccCCccc
Q 040184          259 NYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS-SLYDIMMASNHLQ  310 (699)
Q Consensus       259 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~  310 (699)
                      + ++.+...+|.++ +|+.+++.+|.+....+..|.+++ +++.|.+..+.+.
T Consensus       333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          333 N-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             T-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             c-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            5 666777899999 999999999988766677787774 7888988877544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=1.3e-16  Score=163.53  Aligned_cols=289  Identities=12%  Similarity=-0.010  Sum_probs=147.7

Q ss_pred             CCCCCEEeCCCCcccccCCcccccC-CCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCC----
Q 040184           26 LTSIERLFLSYNQFQIPFSLEPFFN-NSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYN----  100 (699)
Q Consensus        26 l~~L~~L~Ls~n~~~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~----  100 (699)
                      ++++++|.++++- . ......+.. +++|+.|||++|++.......   ...+.++.+.+..+.   +.+.+|.+    
T Consensus        24 ~~~l~~L~l~g~i-~-~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~---I~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGKL-N-AEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANF---VPAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEEE-C-HHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTE---ECTTTTEEEETT
T ss_pred             hCceeEEEEeccc-c-HHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccc---cCHHHhcccccc
Confidence            5678888888652 1 112223444 788888899888876211111   111123445544442   23455666    


Q ss_pred             ----CCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccC---CccCchhhhh
Q 040184          101 ----QHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFF---QGNIPLEIGV  173 (699)
Q Consensus       101 ----~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i---~~~~~~~~~~  173 (699)
                          |++|+.+++.. .++ .+++..|.+|++|+.+++++|.+..+.+.+|..+.++..+....+..   ...+....+.
T Consensus        96 ~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             cccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence                77777777777 665 56666677777777777777777666667777666666555443211   0011222222


Q ss_pred             cCCCCc-EEeCcCCcc-cccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCC
Q 040184          174 YFPRLV-YLNLSRNDF-NGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKL  251 (699)
Q Consensus       174 ~~~~L~-~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  251 (699)
                      .+..|+ .+.+....- .......-....+++.+.+.++-.. .-...+...+++|+.+++++|.+.......|.++.+|
T Consensus       174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L  252 (329)
T 3sb4_A          174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL  252 (329)
T ss_dssp             ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred             cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence            233443 333322110 0000000112233444444433111 1111222235566666666555555555555556666


Q ss_pred             cEEEccCCcCCccCCccCcCCCCCc-eEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEE
Q 040184          252 VSLHLDANYFTGEIPKSLSNCSHLE-GLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILD  327 (699)
Q Consensus       252 ~~L~L~~n~i~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  327 (699)
                      +++++++| ++.+.+.+|.++++|+ .+++.+ .++...+.+|.+|++|+.+++.+|.+..+.+.+|.++++|+.+.
T Consensus       253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            66666555 4445555556666665 565555 44444445555555555555555555555555555555555553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=4.6e-19  Score=193.87  Aligned_cols=204  Identities=16%  Similarity=0.129  Sum_probs=114.0

Q ss_pred             cCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCc-------------ccccCCccccCCCCCcEEE-cccccCcc
Q 040184          270 SNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNH-------------LQGPIPLEFCQLNYLQILD-LSENNISG  335 (699)
Q Consensus       270 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~n~i~~  335 (699)
                      ..+++|+.|++++|+++ .+|..++++++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            44566777777777765 566667777777777765553             3344555566666666666 5555432 


Q ss_pred             cCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCC
Q 040184          336 SLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR  415 (699)
Q Consensus       336 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  415 (699)
                               .|..+.+.+|.+....+       ..|+.|++++|.+++ +|. +..+++|+.|++++|+++ .+|..+..
T Consensus       424 ---------~L~~l~l~~n~i~~l~~-------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          424 ---------DLRSKFLLENSVLKMEY-------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHHH-------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             ---------hhhhhhhhcccccccCc-------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence                     23333344443322110       124555555555543 232 444445555555555444 33444444


Q ss_pred             CCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCc
Q 040184          416 LKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNK  495 (699)
Q Consensus       416 l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  495 (699)
                      +++                                                                             
T Consensus       485 l~~-----------------------------------------------------------------------------  487 (567)
T 1dce_A          485 LRC-----------------------------------------------------------------------------  487 (567)
T ss_dssp             CTT-----------------------------------------------------------------------------
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            444                                                                             


Q ss_pred             ccEEEccCCccCccCCccccccCccCeEEccCCcCcccC-CccccCCCCCCEEeCCCCcccccCCc---ccccCCCCCee
Q 040184          496 MYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVI-PVTFSNLNQVESLDISYNNLNGKIPP---QLVELNALAFF  571 (699)
Q Consensus       496 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L  571 (699)
                      |+.|+|++|.+++ +| .++.+++|++|+|++|++++.. |..++.+++|+.|+|++|++++..|.   .+..+++|+.|
T Consensus       488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            4444444444443 34 5666777777777777777665 67777777777777777777754442   22346677776


Q ss_pred             ec
Q 040184          572 SV  573 (699)
Q Consensus       572 ~l  573 (699)
                      ++
T Consensus       566 ~l  567 (567)
T 1dce_A          566 LT  567 (567)
T ss_dssp             EC
T ss_pred             CC
Confidence            53

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=5.3e-17  Score=166.32  Aligned_cols=63  Identities=10%  Similarity=-0.013  Sum_probs=36.1

Q ss_pred             cCCccccccCccC-eEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeee
Q 040184          509 EIPPQISKLTRIR-ALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFS  572 (699)
Q Consensus       509 ~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  572 (699)
                      ..+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++...+..|..+++|+.++
T Consensus       264 I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          264 IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            3344555555565 666655 45545555666666666666666666555555666666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=7.9e-17  Score=158.96  Aligned_cols=152  Identities=18%  Similarity=0.261  Sum_probs=123.5

Q ss_pred             ccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccC
Q 040184          365 FFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHN  444 (699)
Q Consensus       365 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~  444 (699)
                      +..+++|+.|++++|.++.. + .+..+++|++|++++|++++..+  +..+++|+.|++++|++++. |...       
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~~~-------  104 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NGIP-------  104 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TTCC-------
T ss_pred             hhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cccc-------
Confidence            66778888899998888754 3 67888999999999999885444  88899999999999988642 2100       


Q ss_pred             CCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEE
Q 040184          445 NGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALN  524 (699)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  524 (699)
                                                                     . ++|+.|++++|++++.  ..+..+++|++|+
T Consensus       105 -----------------------------------------------~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~  134 (263)
T 1xeu_A          105 -----------------------------------------------S-ACLSRLFLDNNELRDT--DSLIHLKNLEILS  134 (263)
T ss_dssp             -----------------------------------------------C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEE
T ss_pred             -----------------------------------------------c-CcccEEEccCCccCCC--hhhcCcccccEEE
Confidence                                                           1 4788999999999863  3588999999999


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccC
Q 040184          525 LSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKI  582 (699)
Q Consensus       525 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  582 (699)
                      +++|++++.  ..+..+++|++|++++|++++.  ..+..+++|+.|++++|++++..
T Consensus       135 Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          135 IRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            999999865  3688999999999999999865  67888999999999999988653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.67  E-value=2.2e-15  Score=158.46  Aligned_cols=59  Identities=19%  Similarity=0.152  Sum_probs=26.4

Q ss_pred             ccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECc
Q 040184          365 FFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLS  425 (699)
Q Consensus       365 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls  425 (699)
                      |.+|.+|+.+++.. .++.+...+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+++.
T Consensus       316 F~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          316 FESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             hcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            44444444444432 233333444444444554444433 333334444444555544443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=2.9e-16  Score=147.83  Aligned_cols=150  Identities=15%  Similarity=0.175  Sum_probs=81.7

Q ss_pred             CCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEE
Q 040184          176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLH  255 (699)
Q Consensus       176 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  255 (699)
                      ++|++|++++|.+. .+| .+..+++|++|++++|.++ .++ . +..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            45555555555555 233 3555555666666655444 332 1 23455566666666655554555555666666666


Q ss_pred             ccCCcCCccCCccCcCCCCCceEECCCCc-CcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCc
Q 040184          256 LDANYFTGEIPKSLSNCSHLEGLYMSDNN-LYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS  334 (699)
Q Consensus       256 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~  334 (699)
                      +++|.+++..+..++.+++|+.|++++|. ++ .++ .+..+++|+.|++++|.+.+. + .+..+++|+.|++++|++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence            66666655455555666666666666665 43 233 455566666666666665532 2 4555666666666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=4.7e-15  Score=154.95  Aligned_cols=265  Identities=14%  Similarity=0.125  Sum_probs=168.6

Q ss_pred             CCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEc
Q 040184          249 RKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDL  328 (699)
Q Consensus       249 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  328 (699)
                      ..++.+.+.++ ++.+...+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.+ .+..+.+.+|.++++|+.+++
T Consensus       113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            44445554432 333444555553 5666666554 444444555553 566666664 444455566667777777777


Q ss_pred             ccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCC
Q 040184          329 SENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGE  408 (699)
Q Consensus       329 ~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  408 (699)
                      .+|.+.......+.+.+|+.+.+..+ + ..+...+|.+|++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++..
T Consensus       188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I  262 (401)
T 4fdw_A          188 SKTKITKLPASTFVYAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI  262 (401)
T ss_dssp             TTSCCSEECTTTTTTCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred             CCCcceEechhhEeecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence            77666655555566667777777644 3 3455556888888888888864 56566777777 788888884 456656


Q ss_pred             CCcccCCCCCCCEEECcCCccc-----ccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecc
Q 040184          409 VPIQLCRLKQLRLIDLSNNNIF-----GQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKE  483 (699)
Q Consensus       409 ~~~~~~~l~~L~~L~ls~n~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (699)
                      ...+|.+|++|+.+++.+|.+.     ...+.+|.                                             
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~---------------------------------------------  297 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE---------------------------------------------  297 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT---------------------------------------------
T ss_pred             ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh---------------------------------------------
Confidence            6778888889999988877664     12222222                                             


Q ss_pred             eeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccc
Q 040184          484 ISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLV  563 (699)
Q Consensus       484 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  563 (699)
                              .+++|+.+++. +.++.....+|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+....+..|.
T Consensus       298 --------~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~  366 (401)
T 4fdw_A          298 --------GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY  366 (401)
T ss_dssp             --------TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred             --------CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccccc
Confidence                    23466677776 3466555667777777777777554 555666777777 777777777777655556666


Q ss_pred             cCC-CCCeeecccCcCc
Q 040184          564 ELN-ALAFFSVAHNNLS  579 (699)
Q Consensus       564 ~l~-~L~~L~l~~N~l~  579 (699)
                      .++ .++.|++..+.+.
T Consensus       367 ~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          367 GFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CSCTTCCEEEECGGGHH
T ss_pred             CCCCCccEEEeCHHHHH
Confidence            663 5677777666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.65  E-value=4.5e-15  Score=156.02  Aligned_cols=247  Identities=12%  Similarity=0.075  Sum_probs=113.9

Q ss_pred             CcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccch
Q 040184          139 LSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPE  218 (699)
Q Consensus       139 i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  218 (699)
                      ++.+...+|.++.+|+.+.+..+ ++ .++...|..+++|+.+++..+ ++.+...+|.++.+|+.+.+..+ +. .+..
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~  133 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGV  133 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecc
Confidence            44455566666666766666532 44 455555555566666666433 34344455555666655554432 22 3333


Q ss_pred             HHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCC
Q 040184          219 HLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS  298 (699)
Q Consensus       219 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  298 (699)
                      ..|.++..++..                        ....  .......+|.++++|+.+.+.++. .......|.++.+
T Consensus       134 ~aF~~~~~~~~~------------------------~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~  186 (394)
T 4fs7_A          134 EAFKGCDFKEIT------------------------IPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGK  186 (394)
T ss_dssp             TTTTTCCCSEEE------------------------CCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTT
T ss_pred             eeeecccccccc------------------------cCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCC
Confidence            333333222111                        1111  111223445555555555554432 2233344555555


Q ss_pred             CcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCC
Q 040184          299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSY  378 (699)
Q Consensus       299 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~  378 (699)
                      |+.+.+..+ +..+...+|..+..|+.+.+..+... .....+...+|+.+.+.....  .+...+|..+..++.+.+..
T Consensus       187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~~--~i~~~~f~~~~~l~~~~~~~  262 (394)
T 4fs7_A          187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSFT--ELGKSVFYGCTDLESISIQN  262 (394)
T ss_dssp             CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTCC--EECSSTTTTCSSCCEEEECC
T ss_pred             ceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCCce--ecccccccccccceeEEcCC
Confidence            555555444 22233445555555555555443322 222223344455554433211  12223355555666665554


Q ss_pred             CCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECc
Q 040184          379 NSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLS  425 (699)
Q Consensus       379 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls  425 (699)
                      +.. ......|..+..++.+....+.+.   ..+|..+.+|+.+.+.
T Consensus       263 ~~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~  305 (394)
T 4fs7_A          263 NKL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLL  305 (394)
T ss_dssp             TTC-EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEEC
T ss_pred             Ccc-eeeccccccccccceeccCceeec---cccccccccccccccc
Confidence            432 234445555555555555443322   2234555555555553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=2.3e-16  Score=155.59  Aligned_cols=166  Identities=20%  Similarity=0.208  Sum_probs=86.0

Q ss_pred             cccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEc
Q 040184           79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYV  158 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  158 (699)
                      +++.++++++.+++..  .+..+++|++|++++|.++ .++ . +..+++|++|++++|.+.+..+  +..+++|++|++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            4555556666554432  3455566666666666665 344 2 3556666666666666655433  555566666666


Q ss_pred             cCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCC
Q 040184          159 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL  238 (699)
Q Consensus       159 ~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  238 (699)
                      ++|+++ .+|....   ++|++|++++|++++.  ..+..+++|+.|++++|+++ .++  .+..+++|++|++++|.+.
T Consensus        93 ~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           93 NRNRLK-NLNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             CSSCCS-CCTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG--GGGGCTTCCEEECTTSCCC
T ss_pred             CCCccC-CcCcccc---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh--HHccCCCCCEEECCCCcCc
Confidence            666655 2332111   4555666666555532  23555555555555555555 333  1233455555555555544


Q ss_pred             ccCcccccCCCCCcEEEccCCcCC
Q 040184          239 GQLFSKKNYLRKLVSLHLDANYFT  262 (699)
Q Consensus       239 ~~~~~~~~~l~~L~~L~L~~n~i~  262 (699)
                      +.  ..+..+++|+.|++++|.+.
T Consensus       164 ~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          164 NT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             ch--HHhccCCCCCEEeCCCCccc
Confidence            33  33444444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=7.4e-19  Score=192.24  Aligned_cols=188  Identities=18%  Similarity=0.093  Sum_probs=98.6

Q ss_pred             CCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCC
Q 040184           99 YNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL  178 (699)
Q Consensus        99 ~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L  178 (699)
                      ..+++|+.|++++|.++ .+|..+ +++++|+.|++++|......+.           .+..+...+..|..+.. +++|
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~-l~~L  411 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSEL-ESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQY-FSTL  411 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHH-HHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHH-HHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHH-HHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHH-HHhc
Confidence            56778888888888886 777775 7778888888765531100000           00011122233333332 4455


Q ss_pred             cEEe-CcCCc-------------ccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCccc
Q 040184          179 VYLN-LSRND-------------FNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSK  244 (699)
Q Consensus       179 ~~L~-L~~n~-------------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  244 (699)
                      +.|+ ++.|.             +....+      ..|+.|++++|.++ .+|.  +..+++|+.|++++|.+. .+|..
T Consensus       412 ~~L~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~  481 (567)
T 1dce_A          412 KAVDPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPA  481 (567)
T ss_dssp             HHHCGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred             ccCcchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchh
Confidence            5555 33332             221111      13555666666555 3453  234555555555555554 44555


Q ss_pred             ccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcC-chhhhccCCCcEEeccCCccccc
Q 040184          245 KNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNI-PAWLGNLSSLYDIMMASNHLQGP  312 (699)
Q Consensus       245 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~  312 (699)
                      +..+++|+.|++++|.+++ +| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|.+.+.
T Consensus       482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            5555555555555555553 33 4555555555555555555443 55555555555555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=1.2e-16  Score=180.38  Aligned_cols=223  Identities=16%  Similarity=0.137  Sum_probs=115.7

Q ss_pred             CCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCCCCCE
Q 040184           27 TSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEY  106 (699)
Q Consensus        27 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~~L~~  106 (699)
                      +.++.|+|++|.+.. .+      ...|+.++|+.+.                +..++++.|.+. ..+..+..++.|+.
T Consensus       173 ~~~~~l~L~~n~~~~-~~------~~~l~~l~Ls~~~----------------i~~~~~~~n~~~-~~~~~~~~l~~L~~  228 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-AN------QALLQHKKLSQYS----------------IDEDDDIENRMV-MPKDSKYDDQLWHA  228 (727)
T ss_dssp             -------------------------------------------------------------------------CCCCCCE
T ss_pred             CccceEEeeCCCCCc-ch------hhHhhcCccCccc----------------ccCcccccccee-cChhhhccCCCCcE
Confidence            456667776666652 22      1234444555443                334445555554 56778889999999


Q ss_pred             EEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCC
Q 040184          107 VDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRN  186 (699)
Q Consensus       107 L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n  186 (699)
                      |+|++|.+. .+|..++ ++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+.. +++|++|+|++|
T Consensus       229 L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N  303 (727)
T 4b8c_D          229 LDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-CFQLKYFYFFDN  303 (727)
T ss_dssp             EECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-GTTCSEEECCSS
T ss_pred             EECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-CCCCCEEECCCC
Confidence            999999998 7887764 8999999999999998 67788899999999999999998 78888766 789999999999


Q ss_pred             cccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCC-------
Q 040184          187 DFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDAN-------  259 (699)
Q Consensus       187 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-------  259 (699)
                      .++ .+|..|+.+++|+.|+|++|.+++.+|..+......+..+++++|.+.+.+|.      .|+.|+++.|       
T Consensus       304 ~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~  376 (727)
T 4b8c_D          304 MVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREY  376 (727)
T ss_dssp             CCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----------------
T ss_pred             CCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeeccccccccc
Confidence            997 67888999999999999999999777766543212233467888888776654      3455666665       


Q ss_pred             -cCCccCCccCcCCCCCceEECCCCcC
Q 040184          260 -YFTGEIPKSLSNCSHLEGLYMSDNNL  285 (699)
Q Consensus       260 -~i~~~~~~~~~~l~~L~~L~l~~n~l  285 (699)
                       .+.+..+..+..+..+....+++|.+
T Consensus       377 ~~l~~~~~~~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          377 DSLQQSTEHLATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             -------------------------CC
T ss_pred             CCccccccchhhcccccceeeeecccc
Confidence             22222223334444444555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=3.9e-15  Score=139.23  Aligned_cols=90  Identities=24%  Similarity=0.313  Sum_probs=74.0

Q ss_pred             CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184          494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV  573 (699)
Q Consensus       494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  573 (699)
                      ++|+.|++++|.+++..+..|.++++|++|+|++|+++++.|..|..+++|++|+|++|+++...+..|..+++|+.|++
T Consensus        54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (193)
T 2wfh_A           54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI  133 (193)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence            36677777777777666777888888999999999998888888888999999999999998666667888899999999


Q ss_pred             ccCcCcccCC
Q 040184          574 AHNNLSGKIP  583 (699)
Q Consensus       574 ~~N~l~~~~~  583 (699)
                      ++|++.+.+.
T Consensus       134 ~~N~~~C~c~  143 (193)
T 2wfh_A          134 GANPLYCDCN  143 (193)
T ss_dssp             CSSCEECSGG
T ss_pred             CCCCeecCCc
Confidence            9999887554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=2e-15  Score=138.20  Aligned_cols=87  Identities=22%  Similarity=0.260  Sum_probs=61.6

Q ss_pred             CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCC-ccccCCCCCCEEeCCCCcccccCC---cccccCCCCC
Q 040184          494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP-VTFSNLNQVESLDISYNNLNGKIP---PQLVELNALA  569 (699)
Q Consensus       494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~  569 (699)
                      ++|+.|++++|.+++.+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+   ..+..+++|+
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT  150 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred             CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence            456666666666665566666677788888888887775432 677778888888888888875544   4677788888


Q ss_pred             eeecccCcCcc
Q 040184          570 FFSVAHNNLSG  580 (699)
Q Consensus       570 ~L~l~~N~l~~  580 (699)
                      +|++++|.+..
T Consensus       151 ~L~l~~n~~~~  161 (168)
T 2ell_A          151 YLDGYDREDQE  161 (168)
T ss_dssp             EETTEETTSCB
T ss_pred             EecCCCCChhh
Confidence            88888887754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=2.6e-15  Score=137.39  Aligned_cols=137  Identities=26%  Similarity=0.304  Sum_probs=113.4

Q ss_pred             CCCccEEECCCCCCC-CCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCC
Q 040184          368 RSSIVTLDLSYNSFS-GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNG  446 (699)
Q Consensus       368 ~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~  446 (699)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|++++.  ..+..+++|++|++++|.+++.+|..+..       
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------   93 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-------   93 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence            467899999999987 56677788899999999999998865  67888999999999999998665544432       


Q ss_pred             CCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCC-ccccccCccCeEEc
Q 040184          447 DNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP-PQISKLTRIRALNL  525 (699)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L  525 (699)
                                                                    +++|+.|++++|.+++..+ ..+..+++|++|++
T Consensus        94 ----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           94 ----------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             ----------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             ----------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence                                                          4589999999999986432 77899999999999


Q ss_pred             cCCcCcccCC---ccccCCCCCCEEeCCCCcccccCCc
Q 040184          526 SHNNLTGVIP---VTFSNLNQVESLDISYNNLNGKIPP  560 (699)
Q Consensus       526 s~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~  560 (699)
                      ++|.+++..+   ..+..+++|++|++++|.+. ..|.
T Consensus       128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            9999997766   58899999999999999988 4443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=9.2e-15  Score=134.98  Aligned_cols=89  Identities=22%  Similarity=0.262  Sum_probs=47.6

Q ss_pred             cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecc
Q 040184          495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA  574 (699)
Q Consensus       495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  574 (699)
                      +|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            44444444444443334445555555556666655555555555555556666666665554444444555556666666


Q ss_pred             cCcCcccCC
Q 040184          575 HNNLSGKIP  583 (699)
Q Consensus       575 ~N~l~~~~~  583 (699)
                      +|++.+.+|
T Consensus       133 ~N~~~~~~~  141 (177)
T 2o6r_A          133 TNPWDCSCP  141 (177)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCeeccCc
Confidence            665555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=7.9e-15  Score=135.43  Aligned_cols=111  Identities=22%  Similarity=0.255  Sum_probs=103.2

Q ss_pred             CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184          494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV  573 (699)
Q Consensus       494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  573 (699)
                      ++++.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            58999999999999877778999999999999999999888888999999999999999999877778899999999999


Q ss_pred             ccCcCcccCCCCCcCCCCCCCCccCCCCCCC
Q 040184          574 AHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC  604 (699)
Q Consensus       574 ~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C  604 (699)
                      ++|++++..+..+..+++++.+++++||+.|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            9999998877777788999999999999999

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=3e-15  Score=133.94  Aligned_cols=128  Identities=20%  Similarity=0.270  Sum_probs=90.9

Q ss_pred             CCCCEEEcccCcCC-CCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcc
Q 040184          393 TYLRYLILANNNLE-GEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTM  471 (699)
Q Consensus       393 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (699)
                      ++|+.|++++|+++ +.+|..+..+++|+.|++++|.+++.  ..+.                                 
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~---------------------------------   61 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP---------------------------------   61 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC---------------------------------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh---------------------------------
Confidence            45666666666665 45566666677777777777766543  1121                                 


Q ss_pred             cccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCccc-CCccccCCCCCCEEeCC
Q 040184          472 EKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGV-IPVTFSNLNQVESLDIS  550 (699)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls  550 (699)
                                          .+++|+.|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|+++
T Consensus        62 --------------------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~  121 (149)
T 2je0_A           62 --------------------KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF  121 (149)
T ss_dssp             --------------------CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred             --------------------cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence                                234677777777777766777777788888888888888864 34678888888888888


Q ss_pred             CCcccccCC---cccccCCCCCeeeccc
Q 040184          551 YNNLNGKIP---PQLVELNALAFFSVAH  575 (699)
Q Consensus       551 ~N~l~~~~p---~~l~~l~~L~~L~l~~  575 (699)
                      +|++++..+   ..+..+++|+.|++++
T Consensus       122 ~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          122 NCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCcccchHHHHHHHHHHCCCcccccCCC
Confidence            888886655   4778888888888763

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=4.6e-16  Score=175.66  Aligned_cols=130  Identities=22%  Similarity=0.239  Sum_probs=51.9

Q ss_pred             CCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcc---------cCCCCC-CCCCccEEEccCccccccCCccccc
Q 040184          297 SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG---------SLPSCS-SHSSITQVHLSKNMLYGPLRYGTFF  366 (699)
Q Consensus       297 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~---------~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~  366 (699)
                      +.++.|++.+|.+... +..     .++.++++.+.+.+         ..+..+ .+..|+.|++++|.+. .++.. +.
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISAN-IF  244 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCS-CCCGG-GG
T ss_pred             CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChh-hc
Confidence            4577788877777642 322     23444444444432         112222 4555666666666654 33333 33


Q ss_pred             CCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCcc
Q 040184          367 NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCL  437 (699)
Q Consensus       367 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~  437 (699)
                      .+++|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|.++ .+|..+
T Consensus       245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~  312 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF  312 (727)
T ss_dssp             GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST
T ss_pred             CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhh
Confidence            5566666666666665 45555566666666666666665 44555666666666666666654 344333

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=6e-15  Score=131.95  Aligned_cols=129  Identities=22%  Similarity=0.273  Sum_probs=104.8

Q ss_pred             CCCccEEECCCCCCC-CCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCC
Q 040184          368 RSSIVTLDLSYNSFS-GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNG  446 (699)
Q Consensus       368 ~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~  446 (699)
                      .++++.|++++|.++ +.+|..+..+++|++|++++|++++.  ..+..+++|++|++++|.+++.+|..+..       
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-------   86 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-------   86 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence            467888888888887 56677778888899999999988855  67888899999999999987655544332       


Q ss_pred             CCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCcc-CCccccccCccCeEEc
Q 040184          447 DNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE-IPPQISKLTRIRALNL  525 (699)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L  525 (699)
                                                                    +++|+.|++++|.+++. .+..+..+++|++|++
T Consensus        87 ----------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           87 ----------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             ----------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             ----------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence                                                          35889999999999864 3477899999999999


Q ss_pred             cCCcCcccCC---ccccCCCCCCEEeCCC
Q 040184          526 SHNNLTGVIP---VTFSNLNQVESLDISY  551 (699)
Q Consensus       526 s~N~l~~~~~---~~~~~l~~L~~L~Ls~  551 (699)
                      ++|++++..+   ..+..+++|+.||+++
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999997766   5789999999999874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=3.7e-14  Score=129.58  Aligned_cols=117  Identities=24%  Similarity=0.283  Sum_probs=101.8

Q ss_pred             cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecc
Q 040184          495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA  574 (699)
Q Consensus       495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  574 (699)
                      ..+.+++++|.++. +|..+  .++|++|+|++|.+++..|..|..+++|++|+|++|+|++..+..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            45789999999984 66655  3899999999999999989999999999999999999998777788999999999999


Q ss_pred             cCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCC-CCCCCCC
Q 040184          575 HNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD-VAAVPEA  619 (699)
Q Consensus       575 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~-~~~~~~~  619 (699)
                      +|++++..+..+..+++|+.+++++||+.|     +|. ..|...|
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c-----~c~~l~~l~~~  127 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC-----ACSDILYLSRW  127 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCT-----TBGGGHHHHHH
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCC-----CchhHHHHHHH
Confidence            999998888888889999999999999999     674 4444434

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.50  E-value=1.5e-12  Score=136.80  Aligned_cols=323  Identities=11%  Similarity=0.107  Sum_probs=203.4

Q ss_pred             CCCcccccCCC-CCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccc-cccccccCCCCCccccEEEccCCcCcccc
Q 040184           17 NISSSPLIHLT-SIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIF-VESESSHSMTPKFQLESVALSGSGIHATF   94 (699)
Q Consensus        17 ~i~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~~~~~L~~L~ls~~~i~~~~   94 (699)
                      .|.+.+|.++. .|+.+.+..+ ++ .|+..+|.++++|+.+.+..+.-. .......+|..|.+|+.+.+..+ ++.+.
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             EcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence            45556788774 5899998865 44 677788889999999888776421 12223445566777887777653 55566


Q ss_pred             chhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhc
Q 040184           95 PKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVY  174 (699)
Q Consensus        95 ~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~  174 (699)
                      ..+|..+.+|+.+.+..+. . .+....|..+..|+.+.+..+ +......+|.. ..|+.+.+..+-.  .+....+..
T Consensus       130 ~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~--~i~~~af~~  203 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT--RIGTNAFSE  203 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC--EECTTTTTT
T ss_pred             hhhhhhhccccccccccee-e-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc--ccccchhhh
Confidence            6788888888888886543 2 455666788888888888654 44455555653 5688887765432  334445555


Q ss_pred             CCCCcEEeCcCCcccccCCc-------------cccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccC
Q 040184          175 FPRLVYLNLSRNDFNGSIPS-------------SIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQL  241 (699)
Q Consensus       175 ~~~L~~L~L~~n~i~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  241 (699)
                      +..++...............             .+.....+..+.+.. .++ .+....|.++..|+.+.+..+.. ...
T Consensus       204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~-~i~~~aF~~c~~L~~i~lp~~~~-~I~  280 (394)
T 4gt6_A          204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVA-RIETHAFDSCAYLASVKMPDSVV-SIG  280 (394)
T ss_dssp             CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEE-EECTTTTTTCSSCCEEECCTTCC-EEC
T ss_pred             ccccceecccccccccccceeecccccccccccccccccccceEEcCC-cce-EcccceeeecccccEEecccccc-eec
Confidence            66666666544432211100             111223344444433 233 45566677788888888865533 355


Q ss_pred             cccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCC
Q 040184          242 FSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLN  321 (699)
Q Consensus       242 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  321 (699)
                      ...|.++.+|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.+...+|.+++
T Consensus       281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~  357 (394)
T 4gt6_A          281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT  357 (394)
T ss_dssp             TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred             CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence            5677788888888886 3455566678888888888888754 55556677888888888888654 5556667788888


Q ss_pred             CCcEEEcccccCcccCCCCCCCCCccEEEccCccc
Q 040184          322 YLQILDLSENNISGSLPSCSSHSSITQVHLSKNML  356 (699)
Q Consensus       322 ~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~  356 (699)
                      +|+.+++.++....  .....+.+|+.+.+..+.+
T Consensus       358 ~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          358 ALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred             CCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence            88888888775432  2344667777777665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=8.8e-14  Score=127.50  Aligned_cols=105  Identities=21%  Similarity=0.249  Sum_probs=94.7

Q ss_pred             cEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccC
Q 040184          497 YGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHN  576 (699)
Q Consensus       497 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  576 (699)
                      +.+++++|+++ .+|..+.  ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67999999997 5666554  89999999999999998999999999999999999999776677889999999999999


Q ss_pred             cCcccCCCCCcCCCCCCCCccCCCCCCC
Q 040184          577 NLSGKIPEWTAQFTTFKEDSYEGNPLLC  604 (699)
Q Consensus       577 ~l~~~~~~~~~~~~~l~~~~~~~Np~~C  604 (699)
                      ++++..+..+..+++++.+++++||+.|
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            9998877778889999999999999999

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=7e-14  Score=128.82  Aligned_cols=84  Identities=13%  Similarity=0.140  Sum_probs=55.1

Q ss_pred             cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCc--cccCCCCCCEEeCCCCcccccCCc----ccccCCCC
Q 040184          495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPV--TFSNLNQVESLDISYNNLNGKIPP----QLVELNAL  568 (699)
Q Consensus       495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L  568 (699)
                      +|+.|++++|.+++..+..+..+++|++|++++|+++. +|.  .+..+++|+.|++++|.++ .+|.    .+..+++|
T Consensus        65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV  142 (176)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence            45555555555554444445677777777777777763 333  6677777777777777777 3444    36777778


Q ss_pred             CeeecccCcCcc
Q 040184          569 AFFSVAHNNLSG  580 (699)
Q Consensus       569 ~~L~l~~N~l~~  580 (699)
                      +.|++++|....
T Consensus       143 ~~Ld~~~n~~~~  154 (176)
T 1a9n_A          143 RVLDFQKVKLKE  154 (176)
T ss_dssp             SEETTEECCHHH
T ss_pred             ceeCCCcCCHHH
Confidence            888887776643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1e-13  Score=127.74  Aligned_cols=134  Identities=19%  Similarity=0.158  Sum_probs=109.4

Q ss_pred             ccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccC
Q 040184          365 FFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHN  444 (699)
Q Consensus       365 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~  444 (699)
                      +..+++|+.|++++|.++.. +......++|++|++++|++++.  ..+..+++|++|++++|.+++..+..+..     
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-----   86 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA-----   86 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH-----
T ss_pred             cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc-----
Confidence            66788999999999999854 54334445999999999999865  57889999999999999998655443333     


Q ss_pred             CCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCc--cccccCccCe
Q 040184          445 NGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP--QISKLTRIRA  522 (699)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~  522 (699)
                                                                      +++|+.|++++|.++. +|.  .+..+++|+.
T Consensus        87 ------------------------------------------------l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~  117 (176)
T 1a9n_A           87 ------------------------------------------------LPDLTELILTNNSLVE-LGDLDPLASLKSLTY  117 (176)
T ss_dssp             ------------------------------------------------CTTCCEEECCSCCCCC-GGGGGGGGGCTTCCE
T ss_pred             ------------------------------------------------CCCCCEEECCCCcCCc-chhhHhhhcCCCCCE
Confidence                                                            4589999999999974 555  7899999999


Q ss_pred             EEccCCcCcccCCc----cccCCCCCCEEeCCCCcccc
Q 040184          523 LNLSHNNLTGVIPV----TFSNLNQVESLDISYNNLNG  556 (699)
Q Consensus       523 L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~  556 (699)
                      |++++|.++.. |.    .+..+++|+.||+++|.+..
T Consensus       118 L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          118 LCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999999854 54    48899999999999998863

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.47  E-value=2.7e-12  Score=134.71  Aligned_cols=79  Identities=13%  Similarity=0.209  Sum_probs=40.1

Q ss_pred             cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecc
Q 040184          495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA  574 (699)
Q Consensus       495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  574 (699)
                      +|+.+++..+ ++.....+|.++++|+++.+..+ ++.+...+|.++++|+.+++.++....   ..+....+|+.+.+.
T Consensus       312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA  386 (394)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred             CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence            3444444322 33334456777777777777544 554555677777777777777765432   345556667666666


Q ss_pred             cCcC
Q 040184          575 HNNL  578 (699)
Q Consensus       575 ~N~l  578 (699)
                      .|.+
T Consensus       387 ~~~~  390 (394)
T 4gt6_A          387 PGSI  390 (394)
T ss_dssp             ----
T ss_pred             CCCE
Confidence            5543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=3.1e-13  Score=123.47  Aligned_cols=90  Identities=22%  Similarity=0.246  Sum_probs=84.6

Q ss_pred             CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184          494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV  573 (699)
Q Consensus       494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  573 (699)
                      ++++.|+|++|.+++..|..|..+++|++|+|++|+++++.+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            47899999999999988999999999999999999999888888999999999999999999877778999999999999


Q ss_pred             ccCcCcccCC
Q 040184          574 AHNNLSGKIP  583 (699)
Q Consensus       574 ~~N~l~~~~~  583 (699)
                      ++|++.+.++
T Consensus       110 ~~N~~~c~c~  119 (170)
T 3g39_A          110 LNNPWDCACS  119 (170)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCCCCCch
Confidence            9999998776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=1.7e-15  Score=142.67  Aligned_cols=152  Identities=24%  Similarity=0.320  Sum_probs=97.0

Q ss_pred             CCCccEEECCCCCCCCCcCh------hhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCC
Q 040184          368 RSSIVTLDLSYNSFSGYIPY------WIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTS  441 (699)
Q Consensus       368 ~~~L~~L~Ls~n~i~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~  441 (699)
                      ...++.++++.+.+.+..|.      .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..  
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~--   91 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV--   91 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH--
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc--
Confidence            34455555555555544443      77778888888888888775 44 6677777888888777775 33332221  


Q ss_pred             ccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccC
Q 040184          442 LHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIR  521 (699)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  521 (699)
                                                                         +++|+.|++++|++++ +| .+..+++|+
T Consensus        92 ---------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~  118 (198)
T 1ds9_A           92 ---------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLR  118 (198)
T ss_dssp             ---------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred             ---------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence                                                               2367777777777775 33 467777777


Q ss_pred             eEEccCCcCcccCC-ccccCCCCCCEEeCCCCcccccCCcc----------cccCCCCCeeecccCcCc
Q 040184          522 ALNLSHNNLTGVIP-VTFSNLNQVESLDISYNNLNGKIPPQ----------LVELNALAFFSVAHNNLS  579 (699)
Q Consensus       522 ~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~l~~N~l~  579 (699)
                      +|++++|++++..+ ..+..+++|++|++++|.+++..|..          +..+++|+.|+  +|+++
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            77777777764332 45667777777777777776554432          56677777665  55554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=8e-13  Score=121.08  Aligned_cols=90  Identities=21%  Similarity=0.260  Sum_probs=83.4

Q ss_pred             CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184          494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV  573 (699)
Q Consensus       494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  573 (699)
                      ++|+.|++++|.+++..|..|..+++|++|+|++|+++++.+..|..+++|++|+|++|+|++..+..|..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            48899999999999988999999999999999999999888888899999999999999999776667999999999999


Q ss_pred             ccCcCcccCC
Q 040184          574 AHNNLSGKIP  583 (699)
Q Consensus       574 ~~N~l~~~~~  583 (699)
                      ++|++.+.++
T Consensus       113 ~~N~~~c~~~  122 (174)
T 2r9u_A          113 YNNPWDCECR  122 (174)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCcccccc
Confidence            9999997665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=2.4e-15  Score=141.65  Aligned_cols=155  Identities=22%  Similarity=0.242  Sum_probs=126.9

Q ss_pred             hhcCCCCCEEEcccCcCCCCCCc------ccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccc
Q 040184          389 IERLTYLRYLILANNNLEGEVPI------QLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRS  462 (699)
Q Consensus       389 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (699)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..                       
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~-----------------------   68 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG-----------------------   68 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence            55677888888998888877776      88899999999999999975 44 4433                       


Q ss_pred             cccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCC
Q 040184          463 TYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN  542 (699)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  542 (699)
                                                    +++|+.|++++|.++ .+|..+..+++|++|++++|++++. | .+..++
T Consensus        69 ------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~  115 (198)
T 1ds9_A           69 ------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV  115 (198)
T ss_dssp             ------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH
T ss_pred             ------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC
Confidence                                          458999999999999 5788888899999999999999974 4 688999


Q ss_pred             CCCEEeCCCCcccccCC-cccccCCCCCeeecccCcCcccCCCC----------CcCCCCCCCCccCCCCCC
Q 040184          543 QVESLDISYNNLNGKIP-PQLVELNALAFFSVAHNNLSGKIPEW----------TAQFTTFKEDSYEGNPLL  603 (699)
Q Consensus       543 ~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~~~----------~~~~~~l~~~~~~~Np~~  603 (699)
                      +|++|++++|++++..+ ..+..+++|++|++++|++++.+|..          +..++.++.++  +||..
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            99999999999985433 47889999999999999999887763          44566666553  65553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=2.8e-13  Score=139.85  Aligned_cols=113  Identities=17%  Similarity=0.263  Sum_probs=89.8

Q ss_pred             EEEccCC-ccCccCCccccccCccCeEEccC-CcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeeccc
Q 040184          498 GVDLSCN-KLTGEIPPQISKLTRIRALNLSH-NNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAH  575 (699)
Q Consensus       498 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  575 (699)
                      .++++++ +++ .+|. +..+++|++|+|++ |.++++.+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4678877 787 4666 88888888888886 888888778888888888888888888888888888888888888888


Q ss_pred             CcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCC
Q 040184          576 NNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPE  618 (699)
Q Consensus       576 N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~  618 (699)
                      |+|++..+..+..+. |+.+.+.+|++.|     +|+..|+..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c-----~c~l~~~~~  126 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHC-----SCALRWLQR  126 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCC-----CGGGHHHHH
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccC-----CCccHHHHH
Confidence            888877776665554 8888888888888     566544433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.30  E-value=1.7e-10  Score=120.40  Aligned_cols=300  Identities=12%  Similarity=0.063  Sum_probs=195.0

Q ss_pred             ccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCC
Q 040184           23 LIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQH  102 (699)
Q Consensus        23 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~  102 (699)
                      +....+|+.+.+... ++ .|+..+|.++.+|+.+++..+ ++..  ...+|..+ +|+.+.+..+ +..+...+|..+ 
T Consensus        42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~I--g~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-  113 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSI--GDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-  113 (379)
T ss_dssp             GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEE--CTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-
T ss_pred             cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEe--chhhhcCC-CCceEECCce-eeEeccceeccC-
Confidence            556678888888754 44 577778888888888888754 3322  23334455 6777777643 555555666655 


Q ss_pred             CCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCc-----------hhh
Q 040184          103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIP-----------LEI  171 (699)
Q Consensus       103 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-----------~~~  171 (699)
                      +|+.+++..+-.  .+....|.++ +++...+.. .+.......+..+..++.+.+..+.......           ...
T Consensus       114 ~L~~i~lp~~~~--~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (379)
T 4h09_A          114 DLDDFEFPGATT--EIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES  189 (379)
T ss_dssp             CCSEEECCTTCC--EECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred             CcccccCCCccc--cccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceecc
Confidence            788888876532  3444445554 566666644 3445556677788888887776543221000           001


Q ss_pred             hhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCC
Q 040184          172 GVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKL  251 (699)
Q Consensus       172 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  251 (699)
                      +.....+..+.+.... .......+..+..|+.+.+..+ +. .+....+.++..|+.+.+..+ +.......|.++.+|
T Consensus       190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l  265 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL  265 (379)
T ss_dssp             CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred             ccccccccccccccce-eEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence            1113345555554433 2245566777788888888654 44 666666777888888888765 555556677888888


Q ss_pred             cEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccc
Q 040184          252 VSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSEN  331 (699)
Q Consensus       252 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  331 (699)
                      +.+.+..+ +......+|.++++|+.+.+.++.++.....+|.++.+|+.+.+..+ ++.+...+|.++++|+.+.+..+
T Consensus       266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            88888654 55456677888888888888887777666778888888888888754 55566677888888888888654


Q ss_pred             cCcccCCCCC
Q 040184          332 NISGSLPSCS  341 (699)
Q Consensus       332 ~i~~~~~~~~  341 (699)
                       ++.....++
T Consensus       344 -v~~I~~~aF  352 (379)
T 4h09_A          344 -ITLIESGAF  352 (379)
T ss_dssp             -CCEECTTTT
T ss_pred             -cCEEchhHh
Confidence             544444444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=3.2e-13  Score=139.62  Aligned_cols=62  Identities=24%  Similarity=0.249  Sum_probs=29.2

Q ss_pred             cccEEEccCCcCccccchhcC-----CCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCc
Q 040184           79 QLESVALSGSGIHATFPKFLY-----NQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLS  140 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~~~l~-----~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~  140 (699)
                      .|++|++++|.++......+.     ..++|+.|++++|.+++.....+...+++|++|+|++|.+.
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~  139 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG  139 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence            455555555555443222221     12455555555555554333333333445555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=4.4e-13  Score=138.65  Aligned_cols=139  Identities=20%  Similarity=0.133  Sum_probs=68.6

Q ss_pred             CCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccc-----cCCCCCCEEEccCCcCCCccchHH---hh
Q 040184          151 WHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-----GDMNSLEALDLSHNQLTGEIPEHL---AM  222 (699)
Q Consensus       151 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~---~~  222 (699)
                      ++|++|++++|.+++.....+...+++|++|+|++|.++......+     ...++|++|++++|.++......+   ..
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            3555555555555433333333334566666666666654333332     234566666666666652111111   12


Q ss_pred             cCCCCcEEEccCCcCCcc----CcccccCCCCCcEEEccCCcCCcc----CCccCcCCCCCceEECCCCcCcCcC
Q 040184          223 SCFNLEFLVLSENSLLGQ----LFSKKNYLRKLVSLHLDANYFTGE----IPKSLSNCSHLEGLYMSDNNLYGNI  289 (699)
Q Consensus       223 ~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~  289 (699)
                      .+++|++|+|++|.+...    ++..+...++|++|++++|.++..    ++.++...++|++|++++|.+++..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            355566666666655432    133344455566666666665532    1223334455666666666655433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.25  E-value=6.5e-12  Score=129.53  Aligned_cols=113  Identities=17%  Similarity=0.212  Sum_probs=89.8

Q ss_pred             CCcccEEEccC-CccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCee
Q 040184          493 LNKMYGVDLSC-NKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFF  571 (699)
Q Consensus       493 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  571 (699)
                      +++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++++|..|.++++|+.|+|++|+|++..+..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            34899999996 999988889999999999999999999999999999999999999999999977666776666 9999


Q ss_pred             ecccCcCcccCCC-CCcCCCCCCCCccCCCCCCCCC
Q 040184          572 SVAHNNLSGKIPE-WTAQFTTFKEDSYEGNPLLCGK  606 (699)
Q Consensus       572 ~l~~N~l~~~~~~-~~~~~~~l~~~~~~~Np~~C~~  606 (699)
                      ++++|++.+.++- ++..+.......+..+.+.|..
T Consensus       109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~  144 (347)
T 2ifg_A          109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHG  144 (347)
T ss_dssp             ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSS
T ss_pred             EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCC
Confidence            9999999876541 1111111223334455666643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.18  E-value=2.1e-09  Score=112.14  Aligned_cols=66  Identities=12%  Similarity=0.093  Sum_probs=42.1

Q ss_pred             cCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeeccc
Q 040184          509 EIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAH  575 (699)
Q Consensus       509 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  575 (699)
                      .....|.++++|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.+...+|..+++|+.+.+..
T Consensus       277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          277 VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            33445666667777777666666666666777777777777544 5445556667777777666643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.82  E-value=2.2e-09  Score=109.75  Aligned_cols=182  Identities=14%  Similarity=0.136  Sum_probs=114.8

Q ss_pred             cccCCCCCCEEeCCCCccc---------ccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCcc
Q 040184           22 PLIHLTSIERLFLSYNQFQ---------IPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHA   92 (699)
Q Consensus        22 ~~~~l~~L~~L~Ls~n~~~---------~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~   92 (699)
                      +...+++|+.|.+.++...         +.+. ..+..+|+|+.|++++|.-...  ..   ...++|++|++..|.+..
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~l--~~---~~~~~L~~L~L~~~~l~~  207 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLSI--GK---KPRPNLKSLEIISGGLPD  207 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCBC--CS---CBCTTCSEEEEECSBCCH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCcee--cc---ccCCCCcEEEEecCCCCh
Confidence            3556788999988765331         0111 3346778999999987731111  11   124589999999888765


Q ss_pred             ccchhcC--CCCCCCEEEcccC--ccccc-----cchhhh-hCCCCCCEEEcCCCcCcccCCCCC---CCCCCCCEEEcc
Q 040184           93 TFPKFLY--NQHDLEYVDFSDS--NLKGE-----FLNWLL-ENNTNLNTLVLRNNSLSGPFRMPI---QPHWHLDTLYVS  159 (699)
Q Consensus        93 ~~~~~l~--~~~~L~~L~ls~n--~~~~~-----~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~l~  159 (699)
                      .....+.  .+++|+.|+|+.+  ...+.     +...+. ..+++|++|+|.+|.+.+..+..+   ..+++|++|+++
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs  287 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS  287 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred             HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence            5444444  7899999998632  11111     111111 247899999999888764322112   246789999999


Q ss_pred             CccCCccCchhhh---hcCCCCcEEeCcCCcccccCCccccC-CCCCCEEEccCCc
Q 040184          160 KNFFQGNIPLEIG---VYFPRLVYLNLSRNDFNGSIPSSIGD-MNSLEALDLSHNQ  211 (699)
Q Consensus       160 ~n~i~~~~~~~~~---~~~~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~  211 (699)
                      .|.+.+..+..+.   ..+++|+.|++++|.++......+.. +  ...++++.++
T Consensus       288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            9988754333332   23689999999999887654444443 2  4568888876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.81  E-value=6.6e-09  Score=106.27  Aligned_cols=203  Identities=16%  Similarity=0.167  Sum_probs=104.1

Q ss_pred             cccEEEccCCcCcc-c-------cchhcCCCCCCCEEEcccCccc---------cccchhhhhCCCCCCEEEcCCCcCcc
Q 040184           79 QLESVALSGSGIHA-T-------FPKFLYNQHDLEYVDFSDSNLK---------GEFLNWLLENNTNLNTLVLRNNSLSG  141 (699)
Q Consensus        79 ~L~~L~ls~~~i~~-~-------~~~~l~~~~~L~~L~ls~n~~~---------~~~~~~~~~~l~~L~~L~Ls~n~i~~  141 (699)
                      +++.|.+..+...+ .       +..+...+++|+.|.+......         +.+. .++..+++|+.|++++|.-..
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce
Confidence            45666666544331 1       1223445678888887654321         1233 345778899999998773111


Q ss_pred             cCCCCCCCCCCCCEEEccCccCCccCchhhhh-cCCCCcEEeCcC--Cccccc-----CCccc--cCCCCCCEEEccCCc
Q 040184          142 PFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGV-YFPRLVYLNLSR--NDFNGS-----IPSSI--GDMNSLEALDLSHNQ  211 (699)
Q Consensus       142 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~~~L~~L~L~~--n~i~~~-----~~~~~--~~l~~L~~L~L~~n~  211 (699)
                       .+. + .+++|+.|++..+.+.......+.. .+|+|++|+|+.  +...+.     +...+  ..+++|++|++++|.
T Consensus       187 -l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          187 -IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             -CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             -ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence             222 3 3778888888887776433333332 467888888753  111110     11112  235666777776666


Q ss_pred             CCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCcc----CCccCcCCCCCceEECCCCcCcC
Q 040184          212 LTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGE----IPKSLSNCSHLEGLYMSDNNLYG  287 (699)
Q Consensus       212 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~  287 (699)
                      +.+..+..++.                      ...+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.+++
T Consensus       264 i~~~~~~~la~----------------------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          264 EQNVVVEMFLE----------------------SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             THHHHHHHHHH----------------------CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CchHHHHHHHh----------------------CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            65333333321                      01244555555555555432    12222345666666666666654


Q ss_pred             cCchhhhccCCCcEEeccCCc
Q 040184          288 NIPAWLGNLSSLYDIMMASNH  308 (699)
Q Consensus       288 ~~~~~~~~l~~L~~L~l~~n~  308 (699)
                      .....+...- ...++++.++
T Consensus       322 ~~~~~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          322 EMKKELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHHC-CSEEECCSBC
T ss_pred             HHHHHHHHHc-CCEEEecCCc
Confidence            3333333211 2445665554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.37  E-value=4.2e-08  Score=90.43  Aligned_cols=45  Identities=11%  Similarity=-0.057  Sum_probs=28.2

Q ss_pred             ChhhhcCCCCCEEEcccC-cCCCC----CCcccCCCCCCCEEECcCCccc
Q 040184          386 PYWIERLTYLRYLILANN-NLEGE----VPIQLCRLKQLRLIDLSNNNIF  430 (699)
Q Consensus       386 ~~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~ls~n~i~  430 (699)
                      ...+...++|++|+|++| .+...    +...+...++|++|++++|.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            344556677777777777 66532    2334555667777777777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.28  E-value=4.7e-07  Score=83.33  Aligned_cols=38  Identities=13%  Similarity=0.215  Sum_probs=21.6

Q ss_pred             CCCcEEeC--cCCccccc----CCccccCCCCCCEEEccCCcCC
Q 040184          176 PRLVYLNL--SRNDFNGS----IPSSIGDMNSLEALDLSHNQLT  213 (699)
Q Consensus       176 ~~L~~L~L--~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~  213 (699)
                      +.|++|+|  ++|.+...    +...+...++|++|++++|.+.
T Consensus       121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            45666666  55655532    2233444566777777777654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=8e-07  Score=85.91  Aligned_cols=61  Identities=25%  Similarity=0.389  Sum_probs=27.0

Q ss_pred             CcccEEEccCCccCc--cCCccccccCccCeEEccCCcCcccCCccccCCC--CCCEEeCCCCcccc
Q 040184          494 NKMYGVDLSCNKLTG--EIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN--QVESLDISYNNLNG  556 (699)
Q Consensus       494 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~  556 (699)
                      ++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|++|+|++|.+.+
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            445555555555544  2223344445555555555555433  1222222  44455555554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.18  E-value=2.2e-07  Score=89.83  Aligned_cols=83  Identities=19%  Similarity=0.287  Sum_probs=63.1

Q ss_pred             EEccCCccC---ccCCccccccCccCeEEccCCcCccc--CCccccCCCCCCEEeCCCCcccccCCcccccCC--CCCee
Q 040184          499 VDLSCNKLT---GEIPPQISKLTRIRALNLSHNNLTGV--IPVTFSNLNQVESLDISYNNLNGKIPPQLVELN--ALAFF  571 (699)
Q Consensus       499 L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L  571 (699)
                      ++++.|...   ...+.....+++|++|+|++|+++++  +|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            666777433   12222235689999999999999974  456777899999999999999865  3344444  89999


Q ss_pred             ecccCcCcccCC
Q 040184          572 SVAHNNLSGKIP  583 (699)
Q Consensus       572 ~l~~N~l~~~~~  583 (699)
                      ++++|++++..|
T Consensus       226 ~L~~Npl~~~~~  237 (267)
T 3rw6_A          226 WLDGNSLCDTFR  237 (267)
T ss_dssp             ECTTSTTGGGCS
T ss_pred             EccCCcCccccC
Confidence            999999998666

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.03  E-value=1.8e-06  Score=77.11  Aligned_cols=84  Identities=10%  Similarity=0.147  Sum_probs=64.9

Q ss_pred             ccccEEEccCCcCccccchhcCCCCCCCEEEcccCc-cccccchhhhhCC----CCCCEEEcCCCc-CcccCCCCCCCCC
Q 040184           78 FQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSN-LKGEFLNWLLENN----TNLNTLVLRNNS-LSGPFRMPIQPHW  151 (699)
Q Consensus        78 ~~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~-~~~~~~~~~~~~l----~~L~~L~Ls~n~-i~~~~~~~~~~l~  151 (699)
                      .+|++||+++|.++...-..+..|++|+.|+|++|. +++.....+ ..+    ++|++|+|++|. +++..-..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            379999999998887777778899999999999985 876666555 443    479999998874 7655444566778


Q ss_pred             CCCEEEccCcc
Q 040184          152 HLDTLYVSKNF  162 (699)
Q Consensus       152 ~L~~L~l~~n~  162 (699)
                      +|++|+++++.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            88888888875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.02  E-value=1e-06  Score=78.81  Aligned_cols=84  Identities=12%  Similarity=0.109  Sum_probs=68.7

Q ss_pred             CcccEEEccCCccCccCCccccccCccCeEEccCCc-CcccCCccccCC----CCCCEEeCCCCc-ccccCCcccccCCC
Q 040184          494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNN-LTGVIPVTFSNL----NQVESLDISYNN-LNGKIPPQLVELNA  567 (699)
Q Consensus       494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~  567 (699)
                      ..|+.||+++|.+++.--..+..+++|++|+|++|. +++.--..+..+    ++|++|+|++|. |+...-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            379999999999987766778899999999999995 665433445554    479999999985 88665567888999


Q ss_pred             CCeeecccCc
Q 040184          568 LAFFSVAHNN  577 (699)
Q Consensus       568 L~~L~l~~N~  577 (699)
                      |+.|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999986

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.91  E-value=1.8e-06  Score=73.75  Aligned_cols=49  Identities=18%  Similarity=0.342  Sum_probs=28.6

Q ss_pred             CCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184          567 ALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS  620 (699)
Q Consensus       567 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~  620 (699)
                      +|+.|+|++|+|+...+..|..++.++.+.+.+|||.|     +|+..|+..|.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C-----dC~l~~l~~wl   80 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC-----DCRLVPLRAWL   80 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC-----SGGGHHHHHHH
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec-----cCccHHHHHHH
Confidence            34555555555554444444445555556667777777     77766665554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.21  E-value=0.00056  Score=58.19  Aligned_cols=55  Identities=25%  Similarity=0.312  Sum_probs=26.2

Q ss_pred             EEEccCCccC-ccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcc
Q 040184          498 GVDLSCNKLT-GEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL  554 (699)
Q Consensus       498 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  554 (699)
                      .++.++++++ ..+|..+.  ++|++|+|++|+|+.+.+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555554 12332221  2455555555555544444455555555555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.03  E-value=0.00044  Score=62.97  Aligned_cols=87  Identities=16%  Similarity=0.198  Sum_probs=38.3

Q ss_pred             CCCCCEEEcCCCcCcccCCCC----CCCCCCCCEEEccCccCCccCchhhhhc---CCCCcEEeCcCC---cccc----c
Q 040184          126 NTNLNTLVLRNNSLSGPFRMP----IQPHWHLDTLYVSKNFFQGNIPLEIGVY---FPRLVYLNLSRN---DFNG----S  191 (699)
Q Consensus       126 l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~l~~n~i~~~~~~~~~~~---~~~L~~L~L~~n---~i~~----~  191 (699)
                      .+.|+.|+|++|.+.+.....    +..-+.|++|+|++|.|.+.--..+...   -+.|++|+|+++   .+..    .
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            344555555555444322222    2233445555555555542222222111   234666666543   2221    1


Q ss_pred             CCccccCCCCCCEEEccCCcC
Q 040184          192 IPSSIGDMNSLEALDLSHNQL  212 (699)
Q Consensus       192 ~~~~~~~l~~L~~L~L~~n~l  212 (699)
                      +...+..-+.|+.|+++.|.+
T Consensus       149 ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCCcCeEeccCCCc
Confidence            233445556677777766544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.94  E-value=0.0005  Score=62.60  Aligned_cols=112  Identities=15%  Similarity=0.108  Sum_probs=54.1

Q ss_pred             hCCCCCCEEEcCCC-cCccc----CCCCCCCCCCCCEEEccCccCCccCchh---hhhcCCCCcEEeCcCCccccc----
Q 040184          124 ENNTNLNTLVLRNN-SLSGP----FRMPIQPHWHLDTLYVSKNFFQGNIPLE---IGVYFPRLVYLNLSRNDFNGS----  191 (699)
Q Consensus       124 ~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~---~~~~~~~L~~L~L~~n~i~~~----  191 (699)
                      .+-+.|++|+|++| .+...    +...+..-+.|+.|+|++|++.+.-...   ..+.-+.|++|+|++|.|...    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34445555555543 44321    2223444556677777777665321111   111234677777777766542    


Q ss_pred             CCccccCCCCCCEEEccCCc---CCCc----cchHHhhcCCCCcEEEccCCc
Q 040184          192 IPSSIGDMNSLEALDLSHNQ---LTGE----IPEHLAMSCFNLEFLVLSENS  236 (699)
Q Consensus       192 ~~~~~~~l~~L~~L~L~~n~---l~~~----~~~~~~~~l~~L~~L~L~~n~  236 (699)
                      +..++..-+.|++|+|++|.   +...    +.+.+ ..-+.|+.|+++.|.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCC
Confidence            23344455567777776542   2211    11111 234566667666554

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=80.84  E-value=1.7  Score=34.31  Aligned_cols=49  Identities=12%  Similarity=-0.014  Sum_probs=39.3

Q ss_pred             CCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccC
Q 040184           11 LNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECN   62 (699)
Q Consensus        11 ~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n   62 (699)
                      +..++ .|...+|.+|++|+.+.|..+- + .|...+|.+|.+|+.+.+...
T Consensus         5 g~~vt-~I~~~aF~~c~~L~~i~iP~~v-~-~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVV-GMDKSLFAGNTVIREITVQPNI-G-LLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCC-SSCSCTTTTCTTCCCEEECTTS-S-CCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccC-EecHHHhcCCCCCcEEEcCCch-h-eEcHHHHhccCCccEEEEcCC
Confidence            34555 7877899999999999998763 3 577788999999999888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	699
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.7 bits (208), Expect = 4e-18
 Identities = 60/417 (14%), Positives = 127/417 (30%), Gaps = 69/417 (16%)

Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
               +   L + +   ++  +  D++ +  L      +             +++ +    
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK------------SIDGV---- 62

Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
                       YL  L  ++   N  T   P  L N + L  + M++N +    P    
Sbjct: 63  -----------EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANL 109

Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQ------LNYLQILDLSENNISGSLPSCSSH----- 343
              +   +         P+             N +  +       S    S  +      
Sbjct: 110 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK 169

Query: 344 --SSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILA 401
             +++T +                   +++ +L  + N  S   P  I   T L  L L 
Sbjct: 170 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLN 227

Query: 402 NNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIP--GCLDNTSLHNNGDNDDSLVPAFNHN 459
            N L+      L  L  L  +DL+NN I    P  G    T L    +   ++ P     
Sbjct: 228 GNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG-- 283

Query: 460 VRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTR 519
                      +    ++     ++        L  +  + L  N ++   P  +S LT+
Sbjct: 284 -----------LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK 330

Query: 520 IRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHN 576
           ++ L  ++N ++     + +NL  +  L   +N ++   P  L  L  +    +   
Sbjct: 331 LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.4 bits (197), Expect = 9e-17
 Identities = 61/364 (16%), Positives = 115/364 (31%), Gaps = 33/364 (9%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           +  +  L  D   +    S   + +L ++ ++  S NQ      + P  N +KL      
Sbjct: 43  LDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMN 96

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKF----------LYNQHDLEYVDFS 110
            N+I   +  ++                                   + +   L  +   
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 111 DSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLE 170
                G  +  L           L  +S        +    +L++L  + N      PL 
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 171 IGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFL 230
           I      L  L+L+ N        ++  + +L  LDL++NQ++   P         L  L
Sbjct: 217 I---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTEL 268

Query: 231 VLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIP 290
            L  N +              + L+ +       I     N  +L  L +  NN+    P
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPIS----NLKNLTYLTLYFNNISDISP 324

Query: 291 AWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVH 350
             + +L+ L  +  A+N +          L  +  L    N IS  L   ++ + ITQ+ 
Sbjct: 325 --VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISD-LTPLANLTRITQLG 379

Query: 351 LSKN 354
           L+  
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.3 bits (189), Expect = 1e-15
 Identities = 58/323 (17%), Positives = 105/323 (32%), Gaps = 27/323 (8%)

Query: 123 LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQG-----NIPLEIGVYFPR 177
           +E   NL  +   NN L+     P++    L  + ++ N         N+    G+    
Sbjct: 62  VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
               ++       ++       N++  +       + +                L+    
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179

Query: 238 LGQLFSKKNY------LRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA 291
           L    +K +       L  L SL    N  +   P      ++L+ L ++ N L      
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IG 235

Query: 292 WLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHL 351
            L +L++L D+ +A+N +    P     L  L  L L  N IS   P     +       
Sbjct: 236 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 352 SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPI 411
              +           N  ++  L L +N+ S   P  +  LT L+ L  ANN +      
Sbjct: 294 ENQLED----ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VS 345

Query: 412 QLCRLKQLRLIDLSNNNIFGQIP 434
            L  L  +  +   +N I    P
Sbjct: 346 SLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 45/315 (14%), Positives = 104/315 (33%), Gaps = 36/315 (11%)

Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKN 354
            L+     ++   ++   +      L+ +  L      I  S+      +++TQ++ S N
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNN 76

Query: 355 MLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC 414
            L          N + +V + ++ N  +   P           L          +     
Sbjct: 77  QLTDIT---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 415 RLK------QLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGS 468
             +       +  I   +     Q     +  +      N  +L      + + +  +  
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 469 STMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHN 528
           + +   ES++ T  +IS       L  +  + L+ N+L       ++ LT +  L+L++N
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 529 NLTGVIPVTFSNLNQVESLDISYNNLNGKIP--------------------PQLVELNAL 568
            ++ + P   S L ++  L +  N ++   P                      +  L  L
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 569 AFFSVAHNNLSGKIP 583
            + ++  NN+S   P
Sbjct: 310 TYLTLYFNNISDISP 324

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 80.6 bits (197), Expect = 5e-17
 Identities = 52/292 (17%), Positives = 98/292 (33%), Gaps = 34/292 (11%)

Query: 323 LQILDLSENNISGSLP---SCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYN 379
           +  LDLS  N+    P   S ++   +  +++                 + +  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 380 SFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDN 439
           + SG IP ++ ++  L  L  + N L G +P  +  L  L  I    N I G IP     
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS--- 168

Query: 440 TSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGV 499
              + +     + +    + +        + +      +        +      +K    
Sbjct: 169 ---YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 500 DLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIP 559
                        ++     +  L+L +N + G +P   + L  + SL++S         
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS--------- 276

Query: 560 PQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDC 611
                           NNL G+IP+       F   +Y  N  LCG PLP C
Sbjct: 277 ---------------FNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.1 bits (188), Expect = 5e-16
 Identities = 59/267 (22%), Positives = 92/267 (34%), Gaps = 28/267 (10%)

Query: 194 SSIGDMNSLEALDLSHNQLTG--EIPEHLAMSCFNLEFLVLSEN-SLLGQLFSKKNYLRK 250
            +      +  LDLS   L     IP  LA +   L FL +    +L+G +      L +
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 251 LVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQ 310
           L  L++     +G IP  LS    L  L  S N L G +P  + +L +L  I    N + 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 311 GPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHL------------------- 351
           G IP  +   + L        N        +  +                          
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 352 ----SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEG 407
                          G      ++  LDL  N   G +P  + +L +L  L ++ NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 408 EVPIQLCRLKQLRLIDLSNNNIFGQIP 434
           E+P Q   L++  +   +NN      P
Sbjct: 283 EIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.3 bits (186), Expect = 1e-15
 Identities = 51/287 (17%), Positives = 98/287 (34%), Gaps = 32/287 (11%)

Query: 270 SNCSHLEGLYMSDNNLYGN--IPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILD 327
           +    +  L +S  NL     IP+ L NL  L  + +   +                   
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN------------------- 87

Query: 328 LSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPY 387
              N +    P+ +  + +  ++++                 ++VTLD SYN+ SG +P 
Sbjct: 88  ---NLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143

Query: 388 WIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGD 447
            I  L  L  +    N + G +P       +L      + N                  D
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD 203

Query: 448 NDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT 507
              +++      +  +          ++  +          K      + G+DL  N++ 
Sbjct: 204 LSRNMLEGDASVLFGSD------KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 508 GEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554
           G +P  +++L  + +LN+S NNL G IP    NL + +    + N  
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.8 bits (169), Expect = 1e-13
 Identities = 37/261 (14%), Positives = 79/261 (30%), Gaps = 28/261 (10%)

Query: 2   TSLRVLSLDL--NQLTGNISSSPLI-HLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFS 58
            + RV +LDL    L         + +L  +  L++      +          ++L    
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 59  GECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEF 118
                +         ++    L ++  S + +  T P  + +  +L  + F  + + G  
Sbjct: 108 ITHTNVSGAIP--DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 119 LNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLY--------------------- 157
            +     +    ++ +  N L+G                                     
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 158 VSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIP 217
           +          L        L  L+L  N   G++P  +  +  L +L++S N L GEIP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 218 EHLAMSCFNLEFLVLSENSLL 238
           +   +     +    + N  L
Sbjct: 286 QGGNLQ--RFDVSAYANNKCL 304

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.5 bits (158), Expect = 4e-12
 Identities = 45/252 (17%), Positives = 86/252 (34%), Gaps = 3/252 (1%)

Query: 104 LEYVDFSDSNLKGEF-LNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNF 162
           +  +D S  NL   + +   L N   LN L +   +       P              + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 163 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAM 222
                  +       LV L+ S N  +G++P SI  + +L  +    N+++G IP+    
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 223 SCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSD 282
                  + +S N L G++      L                     S+ +  +     +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 283 NNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSS 342
           +  +      L    +  D  + +N + G +P    QL +L  L++S NN+ G +P   +
Sbjct: 232 SLAFDLGKVGLSKNLNGLD--LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

Query: 343 HSSITQVHLSKN 354
                    + N
Sbjct: 290 LQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 58/264 (21%), Positives = 89/264 (33%), Gaps = 26/264 (9%)

Query: 79  QLESVALSGSGIHATF--PKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRN 136
           ++ ++ LSG  +   +  P  L N   L ++     N     +   +   T L+ L + +
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 137 NSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI 196
            ++SG     +     L TL  S N   G +P  I    P LV +    N  +G+IP S 
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSY 169

Query: 197 GDMNSLEALDLSHN----------------------QLTGEIPEHLAMSCFNLEFLVLSE 234
           G  + L                              +   E    +          +   
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
            + L     K    + L  L L  N   G +P+ L+    L  L +S NNL G IP   G
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GG 288

Query: 295 NLSSLYDIMMASNHLQGPIPLEFC 318
           NL        A+N      PL  C
Sbjct: 289 NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (192), Expect = 1e-16
 Identities = 46/265 (17%), Positives = 84/265 (31%), Gaps = 7/265 (2%)

Query: 167 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFN 226
           +P+ I         + L  N  +    +S     +L  L L  N L              
Sbjct: 26  VPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 227 LEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY 286
            +  +     L     +  + L +L +LHLD        P      + L+ LY+ DN L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 287 GNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSI 346
                   +L +L  + +  N +       F  L+ L  L L +N ++   P        
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 347 TQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLE 406
                        L         ++  L L+ N +            +L+    +++ + 
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVP 261

Query: 407 GEVPIQLCRLKQLRLIDLSNNNIFG 431
             +P    RL    L  L+ N++ G
Sbjct: 262 CSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 2e-14
 Identities = 52/257 (20%), Positives = 81/257 (31%), Gaps = 5/257 (1%)

Query: 102 HDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKN 161
              + +    + +             NL  L L +N L+            L+ L +S N
Sbjct: 32  AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 162 FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLA 221
               ++         RL  L+L R       P     + +L+ L L  N L     +   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF- 149

Query: 222 MSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMS 281
               NL  L L  N +          L  L  L L  N      P +  +   L  LY+ 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 282 DNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS 341
            NNL       L  L +L  + +  N              +LQ    S + +  SLP   
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRL 268

Query: 342 SHSSITQVHLSKNMLYG 358
           +   + +  L+ N L G
Sbjct: 269 AGRDLKR--LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 42/271 (15%), Positives = 91/271 (33%), Gaps = 9/271 (3%)

Query: 17  NISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTP 76
            + + P+    + +R+FL  N+     +   F     L +     N +     ++ +   
Sbjct: 22  GLQAVPVGIPAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 77  KFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRN 136
             +   ++   + + +  P   +    L  +      L+             L  L L++
Sbjct: 81  LLEQLDLS-DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQD 138

Query: 137 NSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI 196
           N+L        +   +L  L++  N     +P         L  L L +N      P + 
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 197 GDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHL 256
            D+  L  L L  N L+  +P         L++L L++N  +      +     L     
Sbjct: 198 RDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRG 255

Query: 257 DANYFTGEIPKSLSNCSHLEGLYMSDNNLYG 287
            ++     +P+ L+         ++ N+L G
Sbjct: 256 SSSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 41/262 (15%), Positives = 78/262 (29%), Gaps = 12/262 (4%)

Query: 321 NYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNS 380
              Q + L  N IS    +         +    + +   +    F   + +  LDLS N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 381 FSGYI-PYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDN 439
               + P     L  L  L L    L+   P     L  L+ + L +N +         +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 440 TSLHNNGDNDDSLVPAFNHNVRSTYSA-GSSTMEKEESIMFTTKEISFSYKGKPLNKMYG 498
                   N   L    N        A           +          +  + L ++  
Sbjct: 152 L------GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
           + L  N L+      ++ L  ++ L L+ N               ++    S + +   +
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSL 264

Query: 559 PPQLVELNALAFFSVAHNNLSG 580
           P +L   +      +A N+L G
Sbjct: 265 PQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 8e-08
 Identities = 42/294 (14%), Positives = 81/294 (27%), Gaps = 36/294 (12%)

Query: 264 EIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYL 323
            +P  +   +  + +++  N +     A      +L  + + SN L       F      
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG---- 78

Query: 324 QILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSG 383
                               + + Q+ LS N     +   TF     + TL L       
Sbjct: 79  -------------------LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119

Query: 384 YIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDN-TSL 442
             P     L  L+YL L +N L+         L  L  + L  N I            SL
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 443 HNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLS 502
                    L+          ++           +         +    PL  +  + L+
Sbjct: 180 DRL------LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

Query: 503 CNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNG 556
            N    +          ++    S + +   +P   +  +      ++ N+L G
Sbjct: 234 DNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 5e-07
 Identities = 37/240 (15%), Positives = 66/240 (27%), Gaps = 7/240 (2%)

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
              VT           +P  I      + + L  N +           + L ++ L +N 
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 429 IFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSY 488
           +           +L    D  D+             +           +     +     
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDN----AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123

Query: 489 KGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLD 548
             + L  +  + L  N L          L  +  L L  N ++ V    F  L+ ++ L 
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 549 ISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPL 608
           +  N +    P    +L  L    +  NNLS    E  A     +      NP +C    
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 2e-14
 Identities = 41/307 (13%), Positives = 87/307 (28%), Gaps = 42/307 (13%)

Query: 251 LVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQ 310
              L L  N  T        N  +L  L + +N +    P     L  L  + ++ N L+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 311 GPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSS 370
                    L  L++ +     +  S+ +  +                            
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ-------------------------MI 127

Query: 371 IVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIF 430
           +V L  +    SG      + +  L Y+ +A+ N+     I       L  + L  N I 
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKIT 184

Query: 431 GQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKG 490
                 L   +         + + A ++   +              ++     ++     
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD---- 240

Query: 491 KPLNKMYGVDLSCNKLTG------EIPPQISKLTRIRALNLSHNNLT--GVIPVTFSNLN 542
                +  V L  N ++         P   +K      ++L  N +    + P TF  + 
Sbjct: 241 --HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 298

Query: 543 QVESLDI 549
              ++ +
Sbjct: 299 VRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.1 bits (165), Expect = 5e-13
 Identities = 45/258 (17%), Positives = 86/258 (33%), Gaps = 11/258 (4%)

Query: 127 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 186
            +   L L+NN ++       +   +L TL +  N      P        +L  L LS+N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKN 89

Query: 187 DFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKN 246
                       +  L   +    ++   +   L  +   +  L  +     G       
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQ 147

Query: 247 YLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMAS 306
            ++KL  + +     T  IP+ L     L  L++  N +     A L  L++L  + ++ 
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 307 NHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYG-----PLR 361
           N +            +L+ L L+ N +       + H  I  V+L  N +          
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 362 YGTFFNRSSIVTLDLSYN 379
            G    ++S   + L  N
Sbjct: 265 PGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 7e-13
 Identities = 43/261 (16%), Positives = 85/261 (32%), Gaps = 14/261 (5%)

Query: 80  LESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSL 139
              + L  + I         N  +L  +   ++ +              L  L L  N L
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQL 91

Query: 140 SGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDM 199
                   +    L          + ++   +      +V L  +    +G    +   M
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLN--QMIVVELGTNPLKSSGIENGAFQGM 149

Query: 200 NSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDAN 259
             L  + ++   +T  IP+ L     +L  L L  N +     +    L  L  L L  N
Sbjct: 150 KKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 260 YFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFC- 318
             +     SL+N  HL  L++++N L   +P  L +   +  + + +N++      +FC 
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 319 -----QLNYLQILDLSENNIS 334
                +      + L  N + 
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 1e-12
 Identities = 47/244 (19%), Positives = 84/244 (34%), Gaps = 8/244 (3%)

Query: 201 SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANY 260
            L  +  S   L  ++P+ L     +   L L  N +          L+ L +L L  N 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 261 FTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQL 320
            +   P + +    LE LY+S N L          L  L    +  N +       F  L
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEITKVRKSVFNGL 123

Query: 321 NYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNS 380
           N + +++L  N +  S     +   + ++     +    +         S+  L L  N 
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSY-IRIADTNITTIPQGLPPSLTELHLDGNK 182

Query: 381 FSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNT 440
            +      ++ L  L  L L+ N++       L     LR + L+NN +     G  D+ 
Sbjct: 183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 242

Query: 441 SLHN 444
            +  
Sbjct: 243 YIQV 246

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.3 bits (155), Expect = 9e-12
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 9/217 (4%)

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
                LDL  N  +       + L  L  LIL NN +    P     L +L  + LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 429 IFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSY 488
           +                 +N+           +S ++  +  +  E            + 
Sbjct: 91  LKELPEKMPKTLQELRVHENE------ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 489 KGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLD 548
             + + K+  + ++   +T  IP  +     +  L+L  N +T V   +   LN +  L 
Sbjct: 145 AFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 549 ISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEW 585
           +S+N+++      L     L    + +N L       
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 53/332 (15%), Positives = 104/332 (31%), Gaps = 62/332 (18%)

Query: 264 EIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYL 323
           ++PK L        L + +N +         NL +L+ +++ +N +    P  F  L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 324 QILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSG 383
           + L LS+N +   LP     +          +           N+  +V L  +    SG
Sbjct: 82  ERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 384 YIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLH 443
                 + +  L Y+ +A+ N+     I       L  + L  N I       L      
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKG---- 193

Query: 444 NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSC 503
                                                            LN +  + LS 
Sbjct: 194 -------------------------------------------------LNNLAKLGLSF 204

Query: 504 NKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLV 563
           N ++      ++    +R L+L++N L   +P   ++   ++ + +  NN++        
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 564 ELNALA-FFSVAHNNLSG-KIPEWTAQFTTFK 593
                    S +  +L    +  W  Q +TF+
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 295

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 38/279 (13%), Positives = 80/279 (28%), Gaps = 28/279 (10%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
               +L L  N++T  I      +L ++  L L  N+         F    KL+      
Sbjct: 31  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSK 88

Query: 62  NEI--------FVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSN 113
           N++            E         ++     +G                    + +   
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 114 LKGEFLNWLLENN---------TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQ 164
           +K      + + N          +L  L L  N ++      ++   +L  L +S N   
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 165 GNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTG-----EIPEH 219
                      P L  L+L+ N     +P  + D   ++ + L +N ++        P  
Sbjct: 209 AVDN-GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 220 LAMSCFNLEFLVLSENSLLGQLFSKKNY--LRKLVSLHL 256
                 +   + L  N +         +  +    ++ L
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 7e-09
 Identities = 48/254 (18%), Positives = 78/254 (30%), Gaps = 13/254 (5%)

Query: 195 SIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSL 254
            +  + S   ++     LT  +P  L     +   L LSEN L     +      +L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 255 HLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIP 314
           +LD    T            + G     +N   ++P     L +L  + ++ N L     
Sbjct: 61  NLDRAELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 315 LEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTL 374
                L  LQ L L  N +    P   + +   +     N     L  G      ++ TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 375 DLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIP 434
            L  NS    IP        L +  L  N          C +   R     N        
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN-----CEILYFRRWLQDNAENVYVWK 231

Query: 435 GCLDNTSLHNNGDN 448
             +D  ++ +N  +
Sbjct: 232 QGVDVKAMTSNVAS 245

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 8e-09
 Identities = 35/188 (18%), Positives = 61/188 (32%), Gaps = 7/188 (3%)

Query: 167 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFN 226
           +P ++         L+LS N       +++     L  L+L   +    + +        
Sbjct: 25  LPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE----LTKLQVDGTLP 77

Query: 227 LEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY 286
           +   +   ++ L  L      L  L  L +  N  T     +L     L+ LY+  N L 
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 287 GNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSI 346
              P  L     L  + +A+N+L          L  L  L L EN++            +
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

Query: 347 TQVHLSKN 354
               L  N
Sbjct: 198 PFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 40/218 (18%), Positives = 66/218 (30%), Gaps = 15/218 (6%)

Query: 339 SCSSHSSITQVHLSKNMLYG-PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRY 397
             S  +S  +V+  K  L   P              L LS N    +    +   T L  
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK-----DTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 398 LILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFN 457
           L L  +  E         L  L  +DLS+N +           +L     + + L     
Sbjct: 60  LNL--DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 458 HNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKL 517
             +R           +E  +     +        P  K+  + L+ N LT      ++ L
Sbjct: 118 GALRGL------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 518 TRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLN 555
             +  L L  N+L   IP  F   + +    +  N   
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 35/246 (14%), Positives = 78/246 (31%), Gaps = 41/246 (16%)

Query: 367 NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSN 426
             +S + ++    + +  +P  +        L L+ N L       L    +L  ++L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 427 NNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISF 486
             +               +  ++               +    +  +  S+         
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL------- 117

Query: 487 SYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVES 546
               + L ++  + L  N+L    P  ++   ++  L+L++NNLT +     + L  +++
Sbjct: 118 -GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 547 LDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 606
           L +  N+L   IP      + L F  +                         GNP LC  
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFL------------------------HGNPWLC-- 209

Query: 607 PLPDCD 612
              +C+
Sbjct: 210 ---NCE 212

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 26/196 (13%), Positives = 46/196 (23%), Gaps = 9/196 (4%)

Query: 17  NISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTP 76
           N+++ P         L LS N     FSL      ++L        ++ ++      +  
Sbjct: 21  NLTALPPDLPKDTTILHLSENLLYT-FSLATLMPYTRLT-------QLNLDRAELTKLQV 72

Query: 77  KFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRN 136
              L  +       +      L  Q          S  +   L             +   
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 137 NSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI 196
            +        +             N     +P  +      L  L L  N    +IP   
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191

Query: 197 GDMNSLEALDLSHNQL 212
              + L    L  N  
Sbjct: 192 FGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 29/184 (15%), Positives = 50/184 (27%), Gaps = 6/184 (3%)

Query: 127 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 186
            +   L L  N L       + P+  L  L + +               P L  L+LS N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHN 87

Query: 187 DFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKN 246
                                 +   +  +     +      +L  +E   L        
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 247 YLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMAS 306
              + +   L  N  T      L+   +L+ L + +N+LY  IP        L    +  
Sbjct: 148 PKLEKL--SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 307 NHLQ 310
           N   
Sbjct: 205 NPWL 208

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-08
 Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 22/269 (8%)

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
           ++     R+  +  +         ++ +DLS++ +       +   C  L+ L L    L
Sbjct: 25  VIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83

Query: 238 LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS 297
              + +       LV L                N S   G          +  + L  L+
Sbjct: 84  SDPIVNTLAKNSNLVRL----------------NLSGCSGFSEFALQTLLSSCSRLDELN 127

Query: 298 SLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHL-SKNML 356
             +       H+Q  +      +  L +    +N     L +             S +++
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187

Query: 357 YGPLRYGTFFNRSSIVTLDLSY-NSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR 415
                +  FF  + +  L LS            +  +  L+ L +     +G + +    
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA 247

Query: 416 LKQLRLIDLSNNNIFGQIPGCLDNTSLHN 444
           L  L+   ++ ++        + N     
Sbjct: 248 LPHLQ---INCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 32/264 (12%), Positives = 80/264 (30%), Gaps = 9/264 (3%)

Query: 304 MASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYG 363
           +   +L   +         +       + +   L    S   +  + LS +++     +G
Sbjct: 7   LTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 65

Query: 364 TFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLID 423
                S +  L L     S  I   + + + L  L L+  +   E  +Q       RL +
Sbjct: 66  ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125

Query: 424 LSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKE 483
           L+ +  F      +     H +       +  +  N++ +  +           +  +  
Sbjct: 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 185

Query: 484 ISFSYKGKPLNKMYG----VDLS-CNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTF 538
           +                  + LS C  +  E   ++ ++  ++ L +      G + +  
Sbjct: 186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK 245

Query: 539 SNLNQVESLDISYNNLNGKIPPQL 562
             L     L I+ ++      P +
Sbjct: 246 EAL---PHLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 21/199 (10%), Positives = 53/199 (26%), Gaps = 3/199 (1%)

Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
           +DL+   L  ++  ++     + A     + +   +   FS   +V+ +D+S + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVST 62

Query: 559 PPQLVE-LNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVP 617
              ++   + L   S+    LS  I    A+ +     +  G        L     +   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 618 EASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSCFYF 677
                             +        +    +     N         +           
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 678 IIDNLIPTRFYHACMQLHY 696
               ++    +    QL+Y
Sbjct: 183 SDSVMLKNDCFQEFFQLNY 201

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 31/229 (13%), Positives = 65/229 (28%), Gaps = 9/229 (3%)

Query: 79  QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNS 138
            + +     S +     +   +   ++++D S+S ++   L+ +L   + L  L L    
Sbjct: 24  GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 139 LSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIG-------VYFPRLVYLNLSRNDFNGS 191
           LS P    +  + +L  L +S         L+                  + +      +
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 192 IPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKL 251
           +      +  L       N    ++   +      +   +     L    F +   L  L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 252 VSLHL-DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSL 299
             L L        E    L     L+ L +      G +      L  L
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 251

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (130), Expect = 2e-08
 Identities = 46/446 (10%), Positives = 112/446 (25%), Gaps = 33/446 (7%)

Query: 153 LDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG----SIPSSIGDMNSLEALDLS 208
           + +L +           E+     +   + L            I S++    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 209 HNQLTGE----IPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGE 264
            N+L       + + L      ++ L L    L G      +   + +    + +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 265 IPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQ 324
           +  +         L          +     + +S   +            L     +  +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 325 ILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGY 384
                        P       +    ++ +                 + L  +     G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 385 IPYWIERLTYLRYLIL-------ANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCL 437
                  L     L               G++   L   + L+ + L+ N +  +    L
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 438 DNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKG------- 490
             T L      +   V + +          S   +    +            G       
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 491 --KPLNKMYGVDLSCNKLTGE----IPPQISKLTRIRALNLSHNNLTGVIPVTFS----- 539
             +P + +  + L+   ++      +   +     +R L+LS+N L     +        
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 540 NLNQVESLDISYNNLNGKIPPQLVEL 565
               +E L +     + ++  +L  L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 5e-06
 Identities = 16/203 (7%), Positives = 39/203 (19%), Gaps = 5/203 (2%)

Query: 500 DLSCNKLTGEIPPQI-SKLTRIRALNLSHNNLTGV----IPVTFSNLNQVESLDISYNNL 554
           D+ C +L+     ++   L + + + L    LT      I         +  L++  N L
Sbjct: 8   DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67

Query: 555 NGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVA 614
                  +++        +   +L                                   A
Sbjct: 68  GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 127

Query: 615 AVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFYLIENWMTSC 674
            +                      + S          +     +          N     
Sbjct: 128 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 187

Query: 675 FYFIIDNLIPTRFYHACMQLHYY 697
                    P +     ++    
Sbjct: 188 VLCQGLKDSPCQLEALKLESCGV 210

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 47/458 (10%), Positives = 105/458 (22%), Gaps = 21/458 (4%)

Query: 3   SLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQ---IPFSLEPFFNNSKLKVFSG 59
            ++ L +   +L+    +  L  L   + + L                   N  L   + 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 60  ECNEI---FVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKG 116
             NE+    V        TP  +++ ++L    +       L +                
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH---- 118

Query: 117 EFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFP 176
              + LL +           +      ++ ++                   P    +   
Sbjct: 119 -LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 177

Query: 177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS 236
                          +  S   + +L+                +  S  +L  L L  N 
Sbjct: 178 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237

Query: 237 LLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNL 296
           L     ++        S  L   +       +         L   ++    ++       
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297

Query: 297 SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNML 356
                +          +   + +           +  S    +          +  ++  
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAACC-SHFSSVLAQNRFLLELQISNNRLEDAG 356

Query: 357 YGPLRYGTFFNRSSIVTLDLSYNSFSG----YIPYWIERLTYLRYLILANNNLEGEVPIQ 412
              L  G     S +  L L+    S      +   +     LR L L+NN L     +Q
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 413 LCR-----LKQLRLIDLSNNNIFGQIPGCLDNTSLHNN 445
           L          L  + L +     ++   L        
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKP 454

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 7e-05
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 15/92 (16%)

Query: 175 FPRLVYLNLSRNDFNG----SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMS----CFN 226
              L  L L+  D +     S+ +++   +SL  LDLS+N L       L  S       
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 227 LEFLVLSENSL-------LGQLFSKKNYLRKL 251
           LE LVL +          L  L   K  LR +
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 34/166 (20%), Positives = 53/166 (31%), Gaps = 5/166 (3%)

Query: 191 SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRK 250
            IP  I        L L+ N+L     + L     +L  L L  N L G   +       
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 251 LVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQ 310
           +  L L  N       K       L+ L + DN +   +P    +L+SL  + +ASN   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 311 GPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNML 356
               L +      +   L+        P  S    +    L  +  
Sbjct: 140 CNCHLAWFAEWLRK-KSLNGGAARCGAP--SKVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 22/159 (13%), Positives = 43/159 (27%), Gaps = 5/159 (3%)

Query: 127 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 186
            +   L+L +N L       +            K      I          +  L L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 187 DFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKN 246
                       ++ L+ L+L  NQ++  +P        +L  L L+ N           
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNPFNC-NCHLAW 146

Query: 247 YLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL 285
           +   L    L+        P  + +    +   +  +  
Sbjct: 147 FAEWLRKKSLNGGAARCGAPSKVRDVQIKD---LPHSEF 182

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 39/264 (14%), Positives = 70/264 (26%), Gaps = 48/264 (18%)

Query: 168 PLEIGVYFP-----RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAM 222
           P  I V FP       + +   +++   ++  +  D++ +  L      +T         
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT--------- 54

Query: 223 SCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSD 282
               +E +                YL  L+ L L  N  T   P           L  + 
Sbjct: 55  ---TIEGV---------------QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP 96

Query: 283 NNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSS 342
                 I       +        ++            L                + + S 
Sbjct: 97  LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN----------QITNISP 146

Query: 343 HSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILAN 402
            + +T +                 N S + TL    N  S   P  +  L  L  + L N
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN 204

Query: 403 NNLEGEVPIQLCRLKQLRLIDLSN 426
           N +    P  L     L ++ L+N
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 22/213 (10%), Positives = 57/213 (26%), Gaps = 19/213 (8%)

Query: 367 NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSN 426
             ++ + +    ++ +  +      L  +  L      +     +Q   L  L  ++L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 427 NNIFGQIPG---------CLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESI 477
           N I    P           L    L N                 +  +  +         
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 478 MFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVT 537
           +        +             LS           ++ L+++  L    N ++ + P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 538 FSNLNQVESLDISYNNLNGKIP----PQLVELN 566
            ++L  +  + +  N ++   P      L  + 
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIVT 223

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 29/233 (12%), Positives = 68/233 (29%), Gaps = 25/233 (10%)

Query: 1   MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
           + +   ++   + +T  ++ +    L  I  L           ++E     + L     +
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 61  CNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN 120
            N+I   +   +         S     +       + +             + L G    
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 121 WLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180
            +L  + N  T +     L+    + I      D   ++                 +L  
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLA--------------NLSKLTT 177

Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLS 233
           L    N  +   P  +  + +L  + L +NQ++   P     +  NL  + L+
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 27/210 (12%), Positives = 66/210 (31%), Gaps = 18/210 (8%)

Query: 350 HLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEV 409
              K+ +   +   T  +   I TL       +      ++ L  L  L L +N +    
Sbjct: 25  AAGKSNVTDTV---TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLA 79

Query: 410 PIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSS 469
           P++         +  +       I G     +L         + P    +         +
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 470 TMEKEESIMFTTKEISFSYKGKPL---------NKMYGVDLSCNKLTGEIPPQISKLTRI 520
            +     +   T     S     +         +K+  +    NK++   P  ++ L  +
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 521 RALNLSHNNLTGVIPVTFSNLNQVESLDIS 550
             ++L +N ++ V P   +N + +  + ++
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 25/217 (11%), Positives = 61/217 (28%), Gaps = 21/217 (9%)

Query: 232 LSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA 291
           +++ + +  +F     L   + +    +  T  +  + ++   +  L      +   I  
Sbjct: 3   ITQPTAINVIFPDPA-LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG 58

Query: 292 WLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHL 351
            +  L++L  + +  N +    PL+         L  +      ++    S  ++     
Sbjct: 59  -VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117

Query: 352 SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTY--------------LRY 397
               +               +    + +  +G        +                L  
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177

Query: 398 LILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIP 434
           L   +N +    P  L  L  L  + L NN I    P
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 3e-06
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 3/112 (2%)

Query: 498 GVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP-VTFSNLNQVESLDISYNNLNG 556
           G+  + +    +    +     +  L + +      +       L ++ +L I  + L  
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 557 KIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPL 608
             P        L+  +++ N L   +   T Q  + +E    GNPL C   L
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 3e-06
 Identities = 55/369 (14%), Positives = 92/369 (24%), Gaps = 58/369 (15%)

Query: 200 NSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDAN 259
                L+L++  L+  +PE       +LE LV S NSL                      
Sbjct: 38  RQAHELELNNLGLS-SLPELPP----HLESLVASCNSL---------------------- 70

Query: 260 YFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQ 319
               E+P+   +   L     +   L    P       S   +                 
Sbjct: 71  ---TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV 127

Query: 320 LNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYN 379
            N                   S           + +  G  +        ++  L   Y 
Sbjct: 128 DN------------------NSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYA 169

Query: 380 SFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDN 439
             +         L+    +   N   E      L  L  +   +     +    P     
Sbjct: 170 DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEAL 229

Query: 440 TSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGV 499
               N   +   L  +      S       +                         +  +
Sbjct: 230 NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 289

Query: 500 DLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNG--K 557
           ++S NKL  E+P    +L R   L  S N+L   +P    NL   + L + YN L     
Sbjct: 290 NVSNNKLI-ELPALPPRLER---LIASFNHLAE-VPELPQNL---KQLHVEYNPLREFPD 341

Query: 558 IPPQLVELN 566
           IP  + +L 
Sbjct: 342 IPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 8e-06
 Identities = 49/331 (14%), Positives = 97/331 (29%), Gaps = 20/331 (6%)

Query: 272 CSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSEN 331
                 L +++  L  ++P    +L SL     + N L   +P     L  L + + +  
Sbjct: 37  DRQAHELELNNLGL-SSLPELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 332 NISGSLPSCSSHSSITQVHLSKNMLYG------PLRYGTFFNRSSIVTLDLSYNSFSGYI 385
            +S   P                 L                 +   +   L + +     
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 386 PYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNN 445
              +  L  L +L     +      +    L    ++  +N          L   +    
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 446 GDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK 505
            +N    +P    ++ +     +   +  E     T           L+++       N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 506 LTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVEL 565
            + EI         +  LN+S+N L   +P     L   E L  S+N+L  ++P     L
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPELPQNL 326

Query: 566 NALAFFSVAHNNLSGKIPEWTAQFTTFKEDS 596
             L    V +N L  + P+        + +S
Sbjct: 327 KQL---HVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 13/168 (7%)

Query: 91  HATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPH 150
                 FL   +    +  +  +L        + +N   +   L  +         I   
Sbjct: 199 ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 258

Query: 151 WHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHN 210
                  +       N    +    P L  LN+S N     +P+       LE L  S N
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFN 314

Query: 211 QLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDA 258
            L  E+PE       NL+ L +  N     L    +    +  L +++
Sbjct: 315 HLA-EVPELPQ----NLKQLHVEYN----PLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 50/308 (16%), Positives = 92/308 (29%), Gaps = 53/308 (17%)

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237
              L L+    + S+P        LE+L  S N LT E+PE       +L+ L++  N+L
Sbjct: 40  AHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELP----QSLKSLLVDNNNL 90

Query: 238 LGQLFSKKNYLRKLVSLH--------------------------------------LDAN 259
                         VS +                                         N
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 260 YFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQ 319
                                +      ++P  L ++ +  +I+     LQ    L    
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 320 LNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYN 379
            +   +  L +   S    +   +       L +++ +  +    F   S +       N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 380 SFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI--FGQIPGCL 437
           + S  I    +    L  L ++NN L  E+P    RL++L     S N++    ++P  L
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAEVPELPQNL 326

Query: 438 DNTSLHNN 445
               +  N
Sbjct: 327 KQLHVEYN 334

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 43/331 (12%), Positives = 89/331 (26%), Gaps = 24/331 (7%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
                L L+   L+ ++   P      +E L  S N       L     + K  +     
Sbjct: 38  RQAHELELNNLGLS-SLPELP----PHLESLVASCNSLT---ELPELPQSLKSLLVDNNN 89

Query: 62  NEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNW 121
            +   +             +   L      +       + + L+ +     +L+      
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 122 LLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL 181
                      +    ++        +      +L            L      P L  +
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 182 NLSRNDFNGSIPSSIG-------DMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
               N                  D    +  +L  +    ++ E++      L   +   
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
           N+   ++ S  +    L  L++  N    E+P        LE L  S N+L   +P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEVPELPQ 324

Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQI 325
           NL  L+   +  N L+   P     +  L++
Sbjct: 325 NLKQLH---VEYNPLRE-FPDIPESVEDLRM 351

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 38/216 (17%), Positives = 65/216 (30%), Gaps = 5/216 (2%)

Query: 191 SIPSSIGDMNSLEALDLSHNQLTGEIPEHLA-MSCFNLEFLVLSENSLLGQLFSKKNYLR 249
            IPS +    +   L     +L        +         +  ++   + +     N  +
Sbjct: 22  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 250 KLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA--WLGNLSSLYDIMMASN 307
                   AN      P++  N  +L+ L +S+  +               L DI    N
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 308 HLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFN 367
                            IL L++N I        + + + +++LS N     L    F  
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 368 RSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANN 403
            S  V LD+S         Y +E L  LR     N 
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 26/210 (12%), Positives = 57/210 (27%), Gaps = 2/210 (0%)

Query: 2   TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGEC 61
            +   L   L +L   I          +E++ +S N        + F N  KL     E 
Sbjct: 29  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 62  NEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNW 121
               +                +  +    H      +++   +      + N+     N 
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 122 LLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL 181
            +  +     L L  N +              +      N     +P ++       V L
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD-NNNLEELPNDVFHGASGPVIL 206

Query: 182 NLSRNDFNGSIPSSIGDMNSLEALDLSHNQ 211
           ++SR   +      + ++  L A    + +
Sbjct: 207 DISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 28/238 (11%), Positives = 67/238 (28%), Gaps = 9/238 (3%)

Query: 324 QILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSG 383
           ++    E+ ++  +PS     +  ++      L   ++ G F     +  +++S N    
Sbjct: 11  RVFLCQESKVT-EIPS-DLPRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLE 67

Query: 384 YIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLH 443
            I   +       + I         +        Q              I    D   +H
Sbjct: 68  VIEADVFSNLPKLHEI--RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 444 NNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSC 503
           +       +    N +     S    + E     +                ++  ++LS 
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 504 NKLTGEIPPQI-SKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPP 560
           N    E+P  +    +    L++S   +  +      NL ++ +          K+P 
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS---TYNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 26/215 (12%), Positives = 50/215 (23%), Gaps = 4/215 (1%)

Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
            + + L                    L  + ++ N++   +   +               
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 429 IFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSY 488
                       +L N      S      H            +  +         I  + 
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLIS-NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 489 KGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLD 548
                 +   + L+ N +        +           +NNL  +    F   +    LD
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 549 ISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583
           IS   ++      L  L  L   S    NL  K+P
Sbjct: 208 ISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 498 GVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGK 557
                 +K+T EIP  +        L      L  +    FS    +E ++IS N++   
Sbjct: 12  VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 558 IPPQ 561
           I   
Sbjct: 69  IEAD 72

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 35/209 (16%), Positives = 70/209 (33%), Gaps = 33/209 (15%)

Query: 167 IPLEIGVYFP-----RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLA 221
           +P  I   F        +  NL +     ++  +  ++NS++ +  +++ +         
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 222 MSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSL------------------HLDANYFTG 263
               N+  L L+ N L              + L                   L   +   
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 264 EIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYL 323
                L +   LE LY+ +N +          L+ L  + +  N +   +P     L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 324 QILDLSENNISGSLPSCSSHSSITQVHLS 352
           Q L LS+N+IS  L + +   ++  + L 
Sbjct: 181 QNLYLSKNHIS-DLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 22/194 (11%), Positives = 61/194 (31%), Gaps = 17/194 (8%)

Query: 367 NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSN 426
             +  +  +L   S +  +      L  +  +I  N++++    IQ   L  +  + L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 427 NNIFGQ----------IPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEES 476
           N +                  +N     +   D   + + +                +  
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 477 IMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPV 536
            ++                        +    +I P ++ LT+++ L LS N+++ +   
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA- 195

Query: 537 TFSNLNQVESLDIS 550
             + L  ++ L++ 
Sbjct: 196 -LAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 29/209 (13%), Positives = 72/209 (34%), Gaps = 21/209 (10%)

Query: 232 LSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA 291
           ++  + + Q+FS      + +  +L     T  +  + +  + ++ +  +++++      
Sbjct: 8   ITVPTPIKQIFSDDA-FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG- 63

Query: 292 WLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHL 351
            +  L ++  + +  N L    PL   +      LD ++     SL       S++  H 
Sbjct: 64  -IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122

Query: 352 SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYW--------------IERLTYLRY 397
             + + G +      +              S                    +  LT L+ 
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182

Query: 398 LILANNNLEGEVPIQLCRLKQLRLIDLSN 426
           L L+ N++       L  LK L +++L +
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 6e-06
 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 8/121 (6%)

Query: 180 YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG 239
            L+L+  D   ++   +  +  +  LDLSHN+L    P   A+ C  +     +    + 
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV- 58

Query: 240 QLFSKKNYLRKLVSLHLDANYFTG-EIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS 298
                   L +L  L L  N        + L +C  L  L +  N+L          L+ 
Sbjct: 59  ---DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAE 114

Query: 299 L 299
           +
Sbjct: 115 M 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 123 LENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN 182
           LE    +  L L +N L             L  L V +        ++     PRL  L 
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALENVDGVANLPRLQELL 71

Query: 183 LSRNDFNG-SIPSSIGDMNSLEALDLSHNQLTGE--IPEHLAMSCFNLEFLV 231
           L  N     +    +     L  L+L  N L  E  I E LA    ++  ++
Sbjct: 72  LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 324 QILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSG 383
           ++L L+  +++  L        +T + LS N L              +  L  S N+   
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN 57

Query: 384 YIPYWIERLTYLRYLILANNNLEGEVPIQ-LCRLKQLRLIDLSNNNI 429
                      L+ L+L NN L+    IQ L    +L L++L  N++
Sbjct: 58  VDGVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 278 LYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSL 337
           L+++  +L   +   L  L  +  + ++ N L+   P     L  L++L  + +N   ++
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ-ASDNALENV 58

Query: 338 PSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFS---GYIPYWIERLTY 394
              ++   + ++ L  N L          +   +V L+L  NS     G      E L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 395 LRYLI 399
           +  ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 6/106 (5%)

Query: 304 MASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYG 363
           +A   L     LE  QL  +  LDLS N +    P+ ++   +  +  S N L       
Sbjct: 5   LAHKDLTVLCHLE--QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 364 TFFNRSSIVTLDLSYNSFSGY-IPYWIERLTYLRYLILANNNLEGE 408
                     L L  N          +     L  L L  N+L  E
Sbjct: 63  NLPRLQ---ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 24/104 (23%)

Query: 500 DLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN----------------- 542
            L+   LT  +   + +L  +  L+LSHN L  + P   +                    
Sbjct: 4   HLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 543 ----QVESLDISYNNLNG-KIPPQLVELNALAFFSVAHNNLSGK 581
               +++ L +  N L        LV    L   ++  N+L  +
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 28/156 (17%), Positives = 47/156 (30%), Gaps = 38/156 (24%)

Query: 396 RYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPA 455
           R L LA+ +L   V   L +L  +  +DLS+N +    P       L             
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLE------------ 46

Query: 456 FNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG-EIPPQI 514
                                +  +   +        L ++  + L  N+L        +
Sbjct: 47  --------------------VLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPL 86

Query: 515 SKLTRIRALNLSHNNLT---GVIPVTFSNLNQVESL 547
               R+  LNL  N+L    G+       L  V S+
Sbjct: 87  VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 505 KLTGEI---PPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQ 561
           KLT E+     Q +   R R L+L    +  VI    + L+Q +++D S N +       
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDG 58

Query: 562 LVELNALAFFSVAHNNLSGKIPEWTAQFTTF 592
              L  L    V +N +              
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 32/293 (10%), Positives = 78/293 (26%), Gaps = 26/293 (8%)

Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLA---MSCFNLEFLVLSE 234
           L    ++  D   S+ + + + +S++ + LS N +  E    L+    S  +LE    S+
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 235 NS---LLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA 291
                +  ++      L + +      +                   ++S +    ++  
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 292 WLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHL 351
               L       +A    +  +  +      L+ +    N +        + +  +   L
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 352 SKNMLYGPLRYGTFFNRSSIVTL-------------DLSYNSFSGYIPYWIERLTYLRYL 398
               +              +  L             +   +  S  +   ++    LR L
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 399 ILANNNLEGEVPIQL------CRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNN 445
            L +  L       +           L+ + L  N I       L        
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 301

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 227 LEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY 286
            + L L        L ++       V L+  ++     +     N   L  L +S+N LY
Sbjct: 24  QQALDLKGLRSDPDLVAQNI----DVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLY 78

Query: 287 G--NIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHS 344
              ++ + +    +L  + ++ N L+    L+  +   L+ L L  N++S +    S++ 
Sbjct: 79  RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138

Query: 345 SITQVHLSK 353
           S  +    K
Sbjct: 139 SAIRERFPK 147

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 30/192 (15%), Positives = 65/192 (33%), Gaps = 19/192 (9%)

Query: 367 NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSN 426
             +  +   L   + +  +      L  +  L      ++    ++   L  L  I+ SN
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSN 71

Query: 427 NNIFGQIP-----------GCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEE 475
           N +    P              +  +      N  +L      N + T       +    
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 476 SIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP 535
            +  ++  IS       L  +  ++ S N++T   P  ++ LT +  L++S N ++ +  
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV 189

Query: 536 VTFSNLNQVESL 547
              + L  +ESL
Sbjct: 190 --LAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 26/181 (14%), Positives = 58/181 (32%), Gaps = 10/181 (5%)

Query: 232 LSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPK------SLSNCSHLEGLYMSDNNL 285
           +++ + +          + +V+   +     G IP       +LS     + L +S NN+
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 286 YGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSS 345
              I + L  + +L  + +  N ++    L+               N   SL       +
Sbjct: 61  -EKISS-LSGMENLRILSLGRNLIKKIENLDAVA--DTLEELWISYNQIASLSGIEKLVN 116

Query: 346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405
           +  +++S N +              +  L L+ N              Y   ++    NL
Sbjct: 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176

Query: 406 E 406
           +
Sbjct: 177 K 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	699
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.45
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.1
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.89

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.3e-29  Score=256.52  Aligned_cols=259  Identities=31%  Similarity=0.511  Sum_probs=211.1

Q ss_pred             CCceEECCCCcCcC--cCchhhhccCCCcEEeccC-CcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEE
Q 040184          274 HLEGLYMSDNNLYG--NIPAWLGNLSSLYDIMMAS-NHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVH  350 (699)
Q Consensus       274 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~  350 (699)
                      .++.|+++++.+.+  .+|..++++++|++|++++ |.+.+.+|..+.++++|++|++++|++.+..+            
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~------------  118 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP------------  118 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC------------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccc------------
Confidence            45666666666654  3566777777777777765 66777777777777777777777777764322            


Q ss_pred             ccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCC-CEEECcCCcc
Q 040184          351 LSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQL-RLIDLSNNNI  429 (699)
Q Consensus       351 l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~ls~n~i  429 (699)
                                 . .+..+..|+.+++++|.+...+|..+..++.++.+++++|.+.+.+|..+..+.++ +.+++++|++
T Consensus       119 -----------~-~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         119 -----------D-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             -----------G-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             -----------c-cccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence                       1 25566778888888888777788888888889999999988888888888877775 8899999999


Q ss_pred             cccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCcc
Q 040184          430 FGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE  509 (699)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  509 (699)
                      ++..|..+..+                                                      ....++++.+...+.
T Consensus       187 ~~~~~~~~~~l------------------------------------------------------~~~~l~l~~~~~~~~  212 (313)
T d1ogqa_         187 TGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEGD  212 (313)
T ss_dssp             EEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEEC
T ss_pred             ccccccccccc------------------------------------------------------ccccccccccccccc
Confidence            88877665543                                                      334688999999989


Q ss_pred             CCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCC
Q 040184          510 IPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQF  589 (699)
Q Consensus       510 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  589 (699)
                      +|..+..+++++.+++++|.+++.+| .++.+++|+.|+|++|++++.+|+.+.++++|++|++++|+++|.+|+. ..+
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-~~L  290 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc-ccC
Confidence            99999999999999999999987655 6888999999999999999999999999999999999999999999974 578


Q ss_pred             CCCCCCccCCCCCCCCCCCCCCC
Q 040184          590 TTFKEDSYEGNPLLCGKPLPDCD  612 (699)
Q Consensus       590 ~~l~~~~~~~Np~~C~~~~~~c~  612 (699)
                      ++++.+++.||+.+||.|++.|.
T Consensus       291 ~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCCC
T ss_pred             CCCCHHHhCCCccccCCCCCCCC
Confidence            99999999999999999998883

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2e-26  Score=240.38  Aligned_cols=342  Identities=22%  Similarity=0.285  Sum_probs=194.8

Q ss_pred             CCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCE
Q 040184          125 NNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEA  204 (699)
Q Consensus       125 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  204 (699)
                      .+.+|++|+++++.++..  ..+..+++|++|++++|+++ .++.  +..+++|++|++++|++.+..  .++.+++|+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccccccc--cccccccccc
Confidence            344556666655555432  23445555555555555555 2332  223556666666666665332  2556666666


Q ss_pred             EEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCc
Q 040184          205 LDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNN  284 (699)
Q Consensus       205 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  284 (699)
                      |+++++.++ .++...  ....+.......|.+......................     ....+...+.........|.
T Consensus       115 L~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         115 LTLFNNQIT-DIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             EECCSSCCC-CCGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccc-cccccc--ccccccccccccccccccccccccccccccccccccc-----hhhhhccccccccccccccc
Confidence            666666665 332221  2445555555555443222222111111111111111     11223333334444444443


Q ss_pred             CcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCccc
Q 040184          285 LYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGT  364 (699)
Q Consensus       285 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  364 (699)
                      ..  ....+..+++++.+++++|.+.+..|  +...++|++|++++|.+.                       . +  +.
T Consensus       187 ~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-----------------------~-~--~~  236 (384)
T d2omza2         187 VS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------D-I--GT  236 (384)
T ss_dssp             CC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------C-C--GG
T ss_pred             cc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-----------------------C-c--ch
Confidence            32  22334455555555555555553322  233445555555555443                       2 1  12


Q ss_pred             ccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccC
Q 040184          365 FFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHN  444 (699)
Q Consensus       365 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~  444 (699)
                      +..+++|+.+++++|.+++..+  +..+++|++|++++|++.+..  .+..++.++.+++++|.+++..  .+       
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~-------  303 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PI-------  303 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GG-------
T ss_pred             hhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccccccccccccc--cc-------
Confidence            5566777777777777765433  666778888888888776432  3667778888888888775321  11       


Q ss_pred             CCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEE
Q 040184          445 NGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALN  524 (699)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  524 (699)
                                                                    ..+++++.|++++|++++..  .+..+++|++|+
T Consensus       304 ----------------------------------------------~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~  335 (384)
T d2omza2         304 ----------------------------------------------SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLF  335 (384)
T ss_dssp             ----------------------------------------------GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEE
T ss_pred             ----------------------------------------------chhcccCeEECCCCCCCCCc--ccccCCCCCEEE
Confidence                                                          12457788888888887643  378888899999


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccC
Q 040184          525 LSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHN  576 (699)
Q Consensus       525 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  576 (699)
                      +++|++++.  ..++++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       336 L~~n~l~~l--~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         336 FANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCCCC--GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCCC--hhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999988853  368888899999999998886544  788889999998887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=5e-26  Score=237.29  Aligned_cols=189  Identities=23%  Similarity=0.311  Sum_probs=152.7

Q ss_pred             CCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCE
Q 040184          342 SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRL  421 (699)
Q Consensus       342 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  421 (699)
                      .+++++.+.+++|.+.+..+   +..+++|++|++++|.+++.  ..+..+++|+.|++++|++++..  .+..+++|++
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~  267 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTE  267 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             cccccceeeccCCccCCCCc---ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCE
Confidence            44556666666666544332   45678899999999999853  46788999999999999998543  3788999999


Q ss_pred             EECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEc
Q 040184          422 IDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDL  501 (699)
Q Consensus       422 L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  501 (699)
                      |++++|++++..+  +                                                     ..++.++.+++
T Consensus       268 L~l~~~~l~~~~~--~-----------------------------------------------------~~~~~l~~l~~  292 (384)
T d2omza2         268 LKLGANQISNISP--L-----------------------------------------------------AGLTALTNLEL  292 (384)
T ss_dssp             EECCSSCCCCCGG--G-----------------------------------------------------TTCTTCSEEEC
T ss_pred             eeccCcccCCCCc--c-----------------------------------------------------ccccccccccc
Confidence            9999999864322  1                                                     12457888999


Q ss_pred             cCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCccc
Q 040184          502 SCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGK  581 (699)
Q Consensus       502 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  581 (699)
                      +.|.+++  ...+..+++++.|++++|++++..  .+..+++|++|++++|++++ ++ .+..+++|++|++++|++++.
T Consensus       293 ~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         293 NENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             CSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBC
T ss_pred             ccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCC
Confidence            9999985  345889999999999999999763  48899999999999999984 44 689999999999999999987


Q ss_pred             CCCCCcCCCCCCCCccCCC
Q 040184          582 IPEWTAQFTTFKEDSYEGN  600 (699)
Q Consensus       582 ~~~~~~~~~~l~~~~~~~N  600 (699)
                      .|  +..+++|+.+++++|
T Consensus       367 ~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         367 TP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GG--GTTCTTCSEEECCCE
T ss_pred             hh--hccCCCCCEeeCCCC
Confidence            66  567899999999887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=4e-27  Score=237.96  Aligned_cols=251  Identities=27%  Similarity=0.424  Sum_probs=160.3

Q ss_pred             CCcEEEccCCcCCc--cCCccCcCCCCCceEECCC-CcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEE
Q 040184          250 KLVSLHLDANYFTG--EIPKSLSNCSHLEGLYMSD-NNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQIL  326 (699)
Q Consensus       250 ~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  326 (699)
                      ++++|+|+++.+.+  .+|..+.++++|++|++++ |.+.+.+|..++++++|++|++++|++.+..+..+..++.|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            34555555555544  2455556666666666654 45555556666666666666666666665555555566666666


Q ss_pred             EcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCC-CEEEcccCcC
Q 040184          327 DLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYL-RYLILANNNL  405 (699)
Q Consensus       327 ~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~L~~n~l  405 (699)
                      ++++|.+.+..|                       .. +..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++
T Consensus       131 ~l~~N~~~~~~p-----------------------~~-l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         131 DFSYNALSGTLP-----------------------PS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCCC-----------------------GG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ccccccccccCc-----------------------hh-hccCcccceeeccccccccccccccccccccccccccccccc
Confidence            666555543222                       11 4445555555555555555555555555554 5566666666


Q ss_pred             CCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeeccee
Q 040184          406 EGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS  485 (699)
Q Consensus       406 ~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (699)
                      ++..+..+..+.. ..++++++...+.+|..+..                                              
T Consensus       187 ~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~----------------------------------------------  219 (313)
T d1ogqa_         187 TGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGS----------------------------------------------  219 (313)
T ss_dssp             EEECCGGGGGCCC-SEEECCSSEEEECCGGGCCT----------------------------------------------
T ss_pred             ccccccccccccc-cccccccccccccccccccc----------------------------------------------
Confidence            6655655555433 35666666666555544332                                              


Q ss_pred             eeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccC
Q 040184          486 FSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVEL  565 (699)
Q Consensus       486 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  565 (699)
                             +++++.+++++|.+.+.+ ..+..+++|+.|+|++|++++.+|..|+++++|++|||++|+++|.+|+ +.++
T Consensus       220 -------~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         220 -------DKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             -------TSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             -------cccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccC
Confidence                   236666777777776544 3577788899999999999988898999999999999999999988884 5778


Q ss_pred             CCCCeeecccCcCcc
Q 040184          566 NALAFFSVAHNNLSG  580 (699)
Q Consensus       566 ~~L~~L~l~~N~l~~  580 (699)
                      ++|+.+++++|+..+
T Consensus       291 ~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         291 QRFDVSAYANNKCLC  305 (313)
T ss_dssp             GGSCGGGTCSSSEEE
T ss_pred             CCCCHHHhCCCcccc
Confidence            889999999997433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=6.3e-24  Score=213.44  Aligned_cols=84  Identities=15%  Similarity=0.223  Sum_probs=47.8

Q ss_pred             cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcc------cccCCCC
Q 040184          495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQ------LVELNAL  568 (699)
Q Consensus       495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~L  568 (699)
                      .++.|++++|.+++..+..+.++++|++|+|++|+++ .+|.+|..+++|++|+|++|+|+......      +..+++|
T Consensus       196 ~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L  274 (305)
T d1xkua_         196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY  274 (305)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred             cccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCC
Confidence            3444444445554444555555666666666666665 33555666666666666666665432222      2345667


Q ss_pred             CeeecccCcCc
Q 040184          569 AFFSVAHNNLS  579 (699)
Q Consensus       569 ~~L~l~~N~l~  579 (699)
                      +.|++++|++.
T Consensus       275 ~~L~L~~N~~~  285 (305)
T d1xkua_         275 SGVSLFSNPVQ  285 (305)
T ss_dssp             SEEECCSSSSC
T ss_pred             CEEECCCCcCc
Confidence            77777777764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.4e-23  Score=210.97  Aligned_cols=245  Identities=24%  Similarity=0.301  Sum_probs=140.6

Q ss_pred             CCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEE
Q 040184          152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLV  231 (699)
Q Consensus       152 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  231 (699)
                      ..+.++-++.+++ .+|..+.   +++++|+|++|+|+...+.+|.++++|++|++++|.+. .+               
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i---------------   70 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KI---------------   70 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CB---------------
T ss_pred             cCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-cc---------------
Confidence            4455555555555 4555443   25555555555555443344555555555555555555 33               


Q ss_pred             ccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCccc-
Q 040184          232 LSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQ-  310 (699)
Q Consensus       232 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-  310 (699)
                               .+..|.++++|++|++++|+++. +|..+  ...++.|++.+|.+.+..+..+.....+..+....|... 
T Consensus        71 ---------~~~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~  138 (305)
T d1xkua_          71 ---------SPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  138 (305)
T ss_dssp             ---------CTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             ---------chhhhhCCCccCEecccCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccc
Confidence                     33444444455555555554442 22211  234555555555555444444555555555555554322 


Q ss_pred             -ccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhh
Q 040184          311 -GPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWI  389 (699)
Q Consensus       311 -~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~  389 (699)
                       ...+..+..+++|+.+++++|.+... +.. .+++++.|++++|......+.. |..++.++.|++++|.+++..+.++
T Consensus       139 ~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~-~~~~L~~L~l~~n~~~~~~~~~-~~~~~~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         139 SGIENGAFQGMKKLSYIRIADTNITTI-PQG-LPPSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCCSC-CSS-CCTTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             cCCCccccccccccCccccccCCcccc-Ccc-cCCccCEEECCCCcCCCCChhH-hhccccccccccccccccccccccc
Confidence             22344556666777777777666532 211 2455666666666655444433 6777777778888777777777777


Q ss_pred             hcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCccccc
Q 040184          390 ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQ  432 (699)
Q Consensus       390 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~  432 (699)
                      .++++|++|+|++|+++ .+|.++..+++|++|++++|+|+..
T Consensus       216 ~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         216 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             cccccceeeeccccccc-ccccccccccCCCEEECCCCccCcc
Confidence            77777888888887776 4566777777777777777777643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.6e-24  Score=211.81  Aligned_cols=215  Identities=21%  Similarity=0.228  Sum_probs=133.9

Q ss_pred             ccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcc-cCcCCCCCCcccCCCCCCCEEEC
Q 040184          346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILA-NNNLEGEVPIQLCRLKQLRLIDL  424 (699)
Q Consensus       346 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l  424 (699)
                      +++|++++|++++ ++...|.++++|++|++++|++....+..+.+++.+..+... .+.+....+..|.++++|++|++
T Consensus        34 ~~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          34 SQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             CSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEECcCCcCCC-CCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            3444444444422 222335666666666666666666656666666666666543 34455455556666666777777


Q ss_pred             cCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCC
Q 040184          425 SNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCN  504 (699)
Q Consensus       425 s~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  504 (699)
                      ++|.+....+..+..                                                     ..+|+.+++++|
T Consensus       113 ~~n~~~~~~~~~~~~-----------------------------------------------------~~~L~~l~l~~N  139 (284)
T d1ozna_         113 DRCGLQELGPGLFRG-----------------------------------------------------LAALQYLYLQDN  139 (284)
T ss_dssp             TTSCCCCCCTTTTTT-----------------------------------------------------CTTCCEEECCSS
T ss_pred             CCcccccccccccch-----------------------------------------------------hcccchhhhccc
Confidence            666664333322221                                                     235666777777


Q ss_pred             ccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCC
Q 040184          505 KLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPE  584 (699)
Q Consensus       505 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~  584 (699)
                      .+++..+..|+.+++|++|++++|++++..+..|.++++|+.+++++|++++..|..|..+++|++|++++|++.+..|.
T Consensus       140 ~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~  219 (284)
T d1ozna_         140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (284)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             cccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccc
Confidence            77655566666777777777777777766666777777777777777777766677777777777777777777766666


Q ss_pred             CCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 040184          585 WTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEA  619 (699)
Q Consensus       585 ~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~  619 (699)
                      .+..+..++.+++++|||.|     +|+..|...|
T Consensus       220 ~~~~~~~L~~L~l~~N~l~C-----~C~~~~l~~~  249 (284)
T d1ozna_         220 ALAPLRALQYLRLNDNPWVC-----DCRARPLWAW  249 (284)
T ss_dssp             HHTTCTTCCEEECCSSCEEC-----SGGGHHHHHH
T ss_pred             ccccccccCEEEecCCCCCC-----CccchHHHHH
Confidence            66666677777777777777     6665544433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-23  Score=207.03  Aligned_cols=89  Identities=21%  Similarity=0.270  Sum_probs=53.6

Q ss_pred             cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecc
Q 040184          495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA  574 (699)
Q Consensus       495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  574 (699)
                      +|+.|++++|++++..+..|.++++|+.+++++|++++..|..|..+++|++||+++|.+.+..+..|..+++|++|+++
T Consensus       154 ~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~  233 (284)
T d1ozna_         154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             chhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEec
Confidence            45555555555555555556666666666666666666666666666666666666666665555556666666666666


Q ss_pred             cCcCcccCC
Q 040184          575 HNNLSGKIP  583 (699)
Q Consensus       575 ~N~l~~~~~  583 (699)
                      +|++.|.++
T Consensus       234 ~N~l~C~C~  242 (284)
T d1ozna_         234 DNPWVCDCR  242 (284)
T ss_dssp             SSCEECSGG
T ss_pred             CCCCCCCcc
Confidence            666655443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-23  Score=206.89  Aligned_cols=190  Identities=24%  Similarity=0.235  Sum_probs=151.1

Q ss_pred             CCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCC
Q 040184          369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDN  448 (699)
Q Consensus       369 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~  448 (699)
                      +++++|+|++|+|++..+..|.++++|++|+|++|+++.. + .+..+++|++|++++|++++. +..+.          
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~----------   97 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQSL-PLLGQ----------   97 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCSSC-CCCTT----------
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccccccccccc-ccccc----------
Confidence            4577888888888766667778888888888888887732 2 356788888888888887643 22222          


Q ss_pred             CCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCC
Q 040184          449 DDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHN  528 (699)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  528 (699)
                                                                 .+++|+.|++++|.+....+..+..+.++++|++++|
T Consensus        98 -------------------------------------------~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n  134 (266)
T d1p9ag_          98 -------------------------------------------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN  134 (266)
T ss_dssp             -------------------------------------------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             -------------------------------------------cccccccccccccccceeecccccccccccccccccc
Confidence                                                       2457888888888888777788888899999999999


Q ss_pred             cCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCC
Q 040184          529 NLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPL  608 (699)
Q Consensus       529 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  608 (699)
                      .++...+..+..+++|+.|++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+..++.+.++||||.|    
T Consensus       135 ~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C----  209 (266)
T d1p9ag_         135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC----  209 (266)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC----
T ss_pred             ccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC----
Confidence            998888888888899999999999998877788888999999999999988 567666678888999999999999    


Q ss_pred             CCCCCCCCCCCC
Q 040184          609 PDCDVAAVPEAS  620 (699)
Q Consensus       609 ~~c~~~~~~~~~  620 (699)
                       +|+..|+..|.
T Consensus       210 -dC~~~~l~~wl  220 (266)
T d1p9ag_         210 -NCEILYFRRWL  220 (266)
T ss_dssp             -SGGGHHHHHHH
T ss_pred             -CcchHHHHHHH
Confidence             88877766654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.1e-21  Score=188.96  Aligned_cols=181  Identities=24%  Similarity=0.319  Sum_probs=147.7

Q ss_pred             CccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEEC
Q 040184          345 SITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDL  424 (699)
Q Consensus       345 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  424 (699)
                      +++.|++++|.+.+ ++...|..+++|++|++++|+++...  .+..+++|++|++++|++. ..+..+..+++|+.|++
T Consensus        32 ~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          32 DTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCC-cCHHHhhccccccccccccccccccc--ccccccccccccccccccc-ccccccccccccccccc
Confidence            45555555555533 33344888888999999999887543  2467889999999999988 45667888999999999


Q ss_pred             cCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCC
Q 040184          425 SNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCN  504 (699)
Q Consensus       425 s~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  504 (699)
                      ++|.+.+..+..+..                                                     +.+++.|++++|
T Consensus       108 ~~~~~~~~~~~~~~~-----------------------------------------------------l~~l~~L~l~~n  134 (266)
T d1p9ag_         108 SFNRLTSLPLGALRG-----------------------------------------------------LGELQELYLKGN  134 (266)
T ss_dssp             CSSCCCCCCSSTTTT-----------------------------------------------------CTTCCEEECTTS
T ss_pred             cccccceeecccccc-----------------------------------------------------cccccccccccc
Confidence            999987554443322                                                     458889999999


Q ss_pred             ccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCC
Q 040184          505 KLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP  583 (699)
Q Consensus       505 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~  583 (699)
                      .++...+..+..+++|+.|++++|++++..++.|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|++.|.+.
T Consensus       135 ~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             ccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            999888888999999999999999999988899999999999999999999 788888899999999999999987553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=2e-17  Score=169.17  Aligned_cols=55  Identities=29%  Similarity=0.405  Sum_probs=30.2

Q ss_pred             cCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCc
Q 040184          517 LTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLS  579 (699)
Q Consensus       517 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  579 (699)
                      +++|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|+.   +++|++|++++|+++
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence            455666666666665 23322   345666666666665 34432   345666666666655

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=1.3e-16  Score=162.83  Aligned_cols=279  Identities=22%  Similarity=0.237  Sum_probs=169.4

Q ss_pred             CCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccE
Q 040184            3 SLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLES   82 (699)
Q Consensus         3 ~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~   82 (699)
                      ++++|||++++++ .+|+    ..++|++|++++|+++ .+|.    ...+|+.|++++|.+.....     .+ ..|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l~~-----lp-~~L~~  102 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALSD-----LP-PLLEY  102 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCCS-----CC-TTCCE
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchhhh-----hc-ccccc
Confidence            6889999999998 7886    2578999999999987 6663    24688999999988765421     11 26889


Q ss_pred             EEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCcc
Q 040184           83 VALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNF  162 (699)
Q Consensus        83 L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~  162 (699)
                      |++++|.+... |. ++.+++|+.|+++++.+. ..+    .....+..+.+..+....  ...+..++.++.+++++|.
T Consensus       103 L~L~~n~l~~l-p~-~~~l~~L~~L~l~~~~~~-~~~----~~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         103 LGVSNNQLEKL-PE-LQNSSFLKIIDVDNNSLK-KLP----DLPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             EECCSSCCSSC-CC-CTTCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSC
T ss_pred             ccccccccccc-cc-hhhhccceeecccccccc-ccc----cccccccchhhccccccc--cccccccccceeccccccc
Confidence            99998888654 42 567888999999888876 333    234677788877665443  4456777888888888887


Q ss_pred             CCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCc
Q 040184          163 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLF  242 (699)
Q Consensus       163 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  242 (699)
                      .. .++..    ....+.+...++.+. ..+ .+..++.|+.+++++|... .++.    ...++..+.+.++.+... +
T Consensus       174 ~~-~~~~~----~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~----~~~~l~~~~~~~~~~~~~-~  240 (353)
T d1jl5a_         174 LK-KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDL-P  240 (353)
T ss_dssp             CS-SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCC-C
T ss_pred             cc-ccccc----ccccccccccccccc-ccc-ccccccccccccccccccc-cccc----cccccccccccccccccc-c
Confidence            65 22221    124456666665554 222 3566777888888877665 4442    245667777776665422 1


Q ss_pred             ccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCC
Q 040184          243 SKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNY  322 (699)
Q Consensus       243 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  322 (699)
                         .....++..++..+.+.+. +.   -.......++..+.+.+.    ...+++|++|++++|++. .+|.   .+++
T Consensus       241 ---~~~~~l~~~~~~~~~~~~l-~~---l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~  305 (353)
T d1jl5a_         241 ---ELPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPR  305 (353)
T ss_dssp             ---CCCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred             ---ccccccccccccccccccc-cc---ccchhcccccccCccccc----cccCCCCCEEECCCCccC-cccc---ccCC
Confidence               1234555555555444321 10   012334444544444321    122345556666555555 2332   2345


Q ss_pred             CcEEEcccccCc
Q 040184          323 LQILDLSENNIS  334 (699)
Q Consensus       323 L~~L~l~~n~i~  334 (699)
                      |+.|++++|+++
T Consensus       306 L~~L~L~~N~L~  317 (353)
T d1jl5a_         306 LERLIASFNHLA  317 (353)
T ss_dssp             CCEEECCSSCCS
T ss_pred             CCEEECCCCcCC
Confidence            555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.8e-21  Score=202.44  Aligned_cols=381  Identities=18%  Similarity=0.122  Sum_probs=186.4

Q ss_pred             CCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccc----cCCccccCCCCCCEEEccCCcCCCccchHHhh----c
Q 040184          152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG----SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAM----S  223 (699)
Q Consensus       152 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~  223 (699)
                      +|++||++++++++..-..+...++++++|+|++|.++.    .++..+..+++|++|+|++|.++..-...+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            455666666666543223344445666666666666653    22334556666666666666664211111111    1


Q ss_pred             CCCCcEEEccCCcCCcc----CcccccCCCCCcEEEccCCcCCccCCccC-----cCCCCCceEECCCCcCcCc----Cc
Q 040184          224 CFNLEFLVLSENSLLGQ----LFSKKNYLRKLVSLHLDANYFTGEIPKSL-----SNCSHLEGLYMSDNNLYGN----IP  290 (699)
Q Consensus       224 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~  290 (699)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.......+     ...............+...    ..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            23566666666665432    23345556666666666666543211111     1112223333333222211    01


Q ss_pred             hhhhccCCCcEEeccCCcccccCC----ccc-cCCCCCcEEEcccccCcccCC-----CCCCCCCccEEEccCcccccc-
Q 040184          291 AWLGNLSSLYDIMMASNHLQGPIP----LEF-CQLNYLQILDLSENNISGSLP-----SCSSHSSITQVHLSKNMLYGP-  359 (699)
Q Consensus       291 ~~~~~l~~L~~L~l~~n~~~~~~~----~~~-~~l~~L~~L~l~~n~i~~~~~-----~~~~~~~L~~L~l~~n~~~~~-  359 (699)
                      ..+.....++.+.++++.......    ..+ ..-.....+++..+.+.....     .......++.+.+.+|.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            122334556666665554331100    001 111234455555544331100     001244556666666554221 


Q ss_pred             ---CCcccccCCCCccEEECCCCCCCCCc----ChhhhcCCCCCEEEcccCcCCCCCCcc-----cCCCCCCCEEECcCC
Q 040184          360 ---LRYGTFFNRSSIVTLDLSYNSFSGYI----PYWIERLTYLRYLILANNNLEGEVPIQ-----LCRLKQLRLIDLSNN  427 (699)
Q Consensus       360 ---~~~~~~~~~~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~ls~n  427 (699)
                         ...........++.+++++|.+....    ...+...+.++.+++++|.+.......     ......|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               11111334566777777777665332    223455677777777777765321111     123456777777777


Q ss_pred             cccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccC
Q 040184          428 NIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT  507 (699)
Q Consensus       428 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  507 (699)
                      .++......+....                                                 ...++|++|+|++|+++
T Consensus       323 ~l~~~~~~~l~~~~-------------------------------------------------~~~~~L~~L~Ls~N~i~  353 (460)
T d1z7xw1         323 SFTAACCSHFSSVL-------------------------------------------------AQNRFLLELQISNNRLE  353 (460)
T ss_dssp             CCBGGGHHHHHHHH-------------------------------------------------HHCSSCCEEECCSSBCH
T ss_pred             chhhhhhhhccccc-------------------------------------------------ccccchhhhheeeeccc
Confidence            76533222111110                                                 11246777777777775


Q ss_pred             cc----CCccc-cccCccCeEEccCCcCccc----CCccccCCCCCCEEeCCCCcccccCCccc----c-cCCCCCeeec
Q 040184          508 GE----IPPQI-SKLTRIRALNLSHNNLTGV----IPVTFSNLNQVESLDISYNNLNGKIPPQL----V-ELNALAFFSV  573 (699)
Q Consensus       508 ~~----~~~~~-~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~-~l~~L~~L~l  573 (699)
                      +.    ++..+ ...+.|++|+|++|.++..    ++..+..+++|++|||++|+|+......+    . ....|+.|++
T Consensus       354 ~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l  433 (460)
T d1z7xw1         354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL  433 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             CcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEEC
Confidence            42    12222 2345677777777777632    33445566777777887777764322222    2 2335777777


Q ss_pred             ccCcCccc
Q 040184          574 AHNNLSGK  581 (699)
Q Consensus       574 ~~N~l~~~  581 (699)
                      .+|.+...
T Consensus       434 ~~~~~~~~  441 (460)
T d1z7xw1         434 YDIYWSEE  441 (460)
T ss_dssp             TTCCCCHH
T ss_pred             CCCCCCHH
Confidence            77776543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6e-21  Score=203.31  Aligned_cols=78  Identities=14%  Similarity=0.095  Sum_probs=50.4

Q ss_pred             CcccEEEccCCccCcc----CCccccccCccCeEEccCCcCcccCCcc----cc-CCCCCCEEeCCCCcccccCCccc--
Q 040184          494 NKMYGVDLSCNKLTGE----IPPQISKLTRIRALNLSHNNLTGVIPVT----FS-NLNQVESLDISYNNLNGKIPPQL--  562 (699)
Q Consensus       494 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~-~l~~L~~L~Ls~N~l~~~~p~~l--  562 (699)
                      +.|+.|+|++|.+++.    ++..+..+++|++|+|++|+++......    +. +...|+.|++++|.+....+..+  
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~  448 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA  448 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHH
Confidence            3577788888877642    3344666788999999999887432222    22 33479999999998875444333  


Q ss_pred             --ccCCCCCee
Q 040184          563 --VELNALAFF  571 (699)
Q Consensus       563 --~~l~~L~~L  571 (699)
                        ...|+|+.|
T Consensus       449 l~~~~~~l~~~  459 (460)
T d1z7xw1         449 LEKDKPSLRVI  459 (460)
T ss_dssp             HHHHCTTSEEE
T ss_pred             HHHhCCCCEEe
Confidence              344555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=3.3e-18  Score=158.02  Aligned_cols=176  Identities=21%  Similarity=0.245  Sum_probs=138.5

Q ss_pred             ccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCC-CCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCC
Q 040184          371 IVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEG-EVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDND  449 (699)
Q Consensus       371 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~  449 (699)
                      .++++.++++++. +|..+.  +++++|+|++|+|++ ..+..|..+++|+.|++++|.+.+..++.+..          
T Consensus        10 ~~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~----------   76 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------   76 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT----------
T ss_pred             CCEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc----------
Confidence            3578888888874 454443  678899999999975 44667788999999999999988777766544          


Q ss_pred             CCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCc
Q 040184          450 DSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNN  529 (699)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  529 (699)
                                                                 +++|++|++++|+++...+..|.++++|++|+|++|+
T Consensus        77 -------------------------------------------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          77 -------------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             -------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             -------------------------------------------ccccceeeeccccccccCHHHHhCCCcccccccCCcc
Confidence                                                       3488899999999998888889999999999999999


Q ss_pred             CcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCC
Q 040184          530 LTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK  606 (699)
Q Consensus       530 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~  606 (699)
                      |+++.++.|..+++|++|+|++|.+....+.. .-...++.+.+..|.+.+..|..   +..++..++..|.+.|..
T Consensus       114 l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCC
T ss_pred             ccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcCCC
Confidence            99999999999999999999999997433221 11234667778889888888764   455667788999999943

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=8e-18  Score=162.15  Aligned_cols=200  Identities=15%  Similarity=0.098  Sum_probs=100.6

Q ss_pred             CCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcC-CcccccCCccccCCCCCCEEE
Q 040184          128 NLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSR-NDFNGSIPSSIGDMNSLEALD  206 (699)
Q Consensus       128 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~  206 (699)
                      ++++|++++|.+....+..|.++++|++|++++|.+...++...+..+++++++.+.. |.+....+..|.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4455555555554444444555555555555555544334444444455555555443 345445555566666666666


Q ss_pred             ccCCcCCCccch-HHhhcCCCCcEEEccCCcCCccCcccccCCC-CCcEEEccCCcCCccCCccCcCCCCCceE-ECCCC
Q 040184          207 LSHNQLTGEIPE-HLAMSCFNLEFLVLSENSLLGQLFSKKNYLR-KLVSLHLDANYFTGEIPKSLSNCSHLEGL-YMSDN  283 (699)
Q Consensus       207 L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L-~l~~n  283 (699)
                      +++|.+. ..+. .....+..+..+..+++.+....+..+.+++ .++.|++++|+++...+..+. .++++.+ ++++|
T Consensus       110 l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n  187 (242)
T d1xwdc1         110 ISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNN  187 (242)
T ss_dssp             EESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCT
T ss_pred             cchhhhc-ccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhcccccccc
Confidence            6666655 2222 1222233444444444444444444444433 566666666666644333333 2333333 34555


Q ss_pred             cCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcc
Q 040184          284 NLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLS  329 (699)
Q Consensus       284 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  329 (699)
                      +++...+..|.++++|+.|++++|+++...+..|.++++|+.+++.
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            5654444455666666666666666664444445555555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.4e-17  Score=160.50  Aligned_cols=198  Identities=14%  Similarity=0.021  Sum_probs=116.4

Q ss_pred             cccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCC-CcCcccCCCCCCCCCCCCEEE
Q 040184           79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRN-NSLSGPFRMPIQPHWHLDTLY  157 (699)
Q Consensus        79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~  157 (699)
                      ++++|++++|.++...+.+|.++++|++|++++|.+.+.++...|.+++.++++.+.. |.+....+..+..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            5677777777776666667777777777777777776555555566777777777654 456666666677777777777


Q ss_pred             ccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCC-CCCEEEccCCcCCCccchHHhhcCCCCcEE-EccCC
Q 040184          158 VSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMN-SLEALDLSHNQLTGEIPEHLAMSCFNLEFL-VLSEN  235 (699)
Q Consensus       158 l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L-~L~~n  235 (699)
                      +++|++....+......++.+..+...++.+....+..|.+++ .++.|++++|.++ .++...+. ..+++++ ++++|
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~-~~~l~~~~~l~~n  187 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFN-GTQLDELNLSDNN  187 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTT-TCCEEEEECTTCT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-cccccccc-chhhhcccccccc
Confidence            7777765322222333344555555556666655555555543 5666777777666 55555442 3444333 33444


Q ss_pred             cCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceE
Q 040184          236 SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGL  278 (699)
Q Consensus       236 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  278 (699)
                      .+....+..|.++++|++|++++|+++...+..|.++++|+.+
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            5544434445555555555555555554333444444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1e-16  Score=152.46  Aligned_cols=203  Identities=15%  Similarity=0.209  Sum_probs=153.2

Q ss_pred             EeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEcc
Q 040184            7 LSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALS   86 (699)
Q Consensus         7 L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls   86 (699)
                      ++++.+++++.+   .+..+.+|++|++++|.++ .++  .+.++++|+.|++++|.+....+    +..+.++++++++
T Consensus        24 ~~l~~~~~~d~~---~~~~l~~L~~L~l~~~~i~-~l~--~l~~l~~L~~L~ls~n~i~~~~~----l~~l~~l~~l~~~   93 (227)
T d1h6ua2          24 IAAGKSNVTDTV---TQADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELS   93 (227)
T ss_dssp             HHTTCSSTTSEE---CHHHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECC
T ss_pred             HHhCCCCcCCcC---CHHHcCCcCEEECCCCCCC-cch--hHhcCCCCcEeecCCceeecccc----ccccccccccccc
Confidence            456667776322   3566788999999999887 453  47889999999999988865432    2444588999999


Q ss_pred             CCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCcc
Q 040184           87 GSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGN  166 (699)
Q Consensus        87 ~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~  166 (699)
                      +|.++..  ..+..+++|+.++++++...+ .+.  +...+.++.+.++.+.+...  ..+..+++|++|++++|.+.+ 
T Consensus        94 ~n~~~~i--~~l~~l~~L~~l~l~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~-  165 (227)
T d1h6ua2          94 GNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD-  165 (227)
T ss_dssp             SCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC-
T ss_pred             ccccccc--ccccccccccccccccccccc-cch--hccccchhhhhchhhhhchh--hhhcccccccccccccccccc-
Confidence            8888654  357888999999999888773 322  35778999999988887653  336778889999999998863 


Q ss_pred             CchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccC
Q 040184          167 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE  234 (699)
Q Consensus       167 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  234 (699)
                      .+ .+ ..+++|++|++++|++++. + .++++++|++|++++|+++ .++.  +.++++|++|++++
T Consensus       166 ~~-~l-~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt-~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         166 LT-PL-ANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQIS-DVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CG-GG-TTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCC-BCGG--GTTCTTCCEEEEEE
T ss_pred             ch-hh-cccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCC-CCcc--cccCCCCCEEEeeC
Confidence            22 23 3478999999999998853 3 4788999999999999998 6664  35799999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.7e-16  Score=150.83  Aligned_cols=187  Identities=22%  Similarity=0.254  Sum_probs=95.4

Q ss_pred             CCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCE
Q 040184          125 NNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEA  204 (699)
Q Consensus       125 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  204 (699)
                      .+.+|++|++.+|+++..  ..+..+++|++|++++|++++..|   +..+++++++++++|.++..  ..+..+++|+.
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~---l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~  111 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc---cccccccccccccccccccc--ccccccccccc
Confidence            344444445544444432  224444455555555544442111   22244555555555555421  23455555555


Q ss_pred             EEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCc
Q 040184          205 LDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNN  284 (699)
Q Consensus       205 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  284 (699)
                      ++++++... .++.  +...+.++.+.++++.+...  ..+..+++|++|++++|.+.+.  ..++++++|+.|++++|+
T Consensus       112 l~l~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         112 LDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNK  184 (227)
T ss_dssp             EECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             ccccccccc-ccch--hccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCc
Confidence            555555544 2221  12345555555555554322  2244556666666666665532  235666666666666666


Q ss_pred             CcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcc
Q 040184          285 LYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLS  329 (699)
Q Consensus       285 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  329 (699)
                      +++. + .++++++|+.|++++|++++..  .+.++++|+.|+++
T Consensus       185 l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         185 ISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             cCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            6542 2 2566666666666666666432  25666666666665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=9.1e-17  Score=148.13  Aligned_cols=172  Identities=23%  Similarity=0.245  Sum_probs=122.9

Q ss_pred             CCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccc-cCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEE
Q 040184          153 LDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG-SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLV  231 (699)
Q Consensus       153 L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  231 (699)
                      .++++.++++++ .+|.++.   +++++|+|++|.|+. ..+..|.++++|+.|++++|.+. .++...+..+++|++|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             CCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceee
Confidence            346777777776 6776654   478888888888864 44566778888888888888887 55666666788888888


Q ss_pred             ccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCch-hhhccCCCcEEeccCCccc
Q 040184          232 LSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPA-WLGNLSSLYDIMMASNHLQ  310 (699)
Q Consensus       232 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~  310 (699)
                      +++|++.+..+..|.++++|++|+|++|.+++..+.+|..+++|++|++++|.+...... ++.  ..++.+.+..+.+.
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~  162 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAAR  162 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCB
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeE
Confidence            888888877778888888888888888888877788888888888888888887643221 221  23455566666666


Q ss_pred             ccCCccccCCCCCcEEEcccccCc
Q 040184          311 GPIPLEFCQLNYLQILDLSENNIS  334 (699)
Q Consensus       311 ~~~~~~~~~l~~L~~L~l~~n~i~  334 (699)
                      ...|..   +.+++.++++.|.+.
T Consensus       163 c~~p~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         163 CGAPSK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             BCSSTT---TTTSBGGGSCTTTCC
T ss_pred             eCCChh---hcCCEeeecCHhhCc
Confidence            555543   345566677766654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.8e-16  Score=155.91  Aligned_cols=181  Identities=24%  Similarity=0.199  Sum_probs=95.4

Q ss_pred             CCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCc-cCCccCchhhhhcCCCCcEE
Q 040184          103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKN-FFQGNIPLEIGVYFPRLVYL  181 (699)
Q Consensus       103 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~~L~~L  181 (699)
                      +|++||++++.+++.....++..+++|++|+++++.+.+..+..+..+++|++|+++++ .+++..-..+...+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            44445554444443333333444555555555555444333333444455555555553 23322222334446677777


Q ss_pred             eCcCCc-cccc-CCcccc-CCCCCCEEEccCCc--CCCccchHHhhcCCCCcEEEccCCc-CCccCcccccCCCCCcEEE
Q 040184          182 NLSRND-FNGS-IPSSIG-DMNSLEALDLSHNQ--LTGEIPEHLAMSCFNLEFLVLSENS-LLGQLFSKKNYLRKLVSLH  255 (699)
Q Consensus       182 ~L~~n~-i~~~-~~~~~~-~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  255 (699)
                      ++++|. +++. ....+. .+++|+.|+++++.  ++...-..++..+++|++|++++|. +++..+..+..+++|++|+
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~  206 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  206 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEE
Confidence            777653 3321 111222 24567777777642  3322222334457777777777753 4555555666677777777


Q ss_pred             ccCC-cCCccCCccCcCCCCCceEECCCC
Q 040184          256 LDAN-YFTGEIPKSLSNCSHLEGLYMSDN  283 (699)
Q Consensus       256 L~~n-~i~~~~~~~~~~l~~L~~L~l~~n  283 (699)
                      +++| .+++.....++++++|+.|+++++
T Consensus       207 L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         207 LSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7774 455444455666777777777766

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.6e-15  Score=141.72  Aligned_cols=146  Identities=23%  Similarity=0.360  Sum_probs=108.4

Q ss_pred             ccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccC
Q 040184          365 FFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHN  444 (699)
Q Consensus       365 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~  444 (699)
                      +..+++|++|++++|++++..  .+..+++|++|++++|++++ ++ .+..+++|+.|++++|.+... + .+.      
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~~-~-~l~------  131 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI-N-GLV------  131 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC-G-GGG------
T ss_pred             HhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccccccccccc-c-ccc------
Confidence            556777888888888877543  35677888888888888874 33 477788888888888876421 1 111      


Q ss_pred             CCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEE
Q 040184          445 NGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALN  524 (699)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  524 (699)
                                                                     .++.++.+++++|.+++  +..+..+++|++++
T Consensus       132 -----------------------------------------------~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~  162 (210)
T d1h6ta2         132 -----------------------------------------------HLPQLESLYLGNNKITD--ITVLSRLTKLDTLS  162 (210)
T ss_dssp             -----------------------------------------------GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred             -----------------------------------------------ccccccccccccccccc--cccccccccccccc
Confidence                                                           23577888888888874  34577888999999


Q ss_pred             ccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeeccc
Q 040184          525 LSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAH  575 (699)
Q Consensus       525 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  575 (699)
                      +++|++++..  .+.++++|++|+|++|+|+. +| .+..+++|++|+|++
T Consensus       163 l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         163 LEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            9999988643  37888999999999999884 44 588889999998874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.9e-15  Score=138.75  Aligned_cols=177  Identities=19%  Similarity=0.192  Sum_probs=135.7

Q ss_pred             EeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEcc
Q 040184            7 LSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALS   86 (699)
Q Consensus         7 L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls   86 (699)
                      +.++.+++++.++   ...++++++|++++|.++ .++  .+..+++|++|++++|+++...+    +..+++|++|+++
T Consensus        23 ~~l~~~~~~~~~~---~~~l~~l~~L~l~~~~i~-~l~--~l~~l~nL~~L~Ls~N~l~~~~~----l~~l~~L~~L~l~   92 (199)
T d2omxa2          23 TVLGKTNVTDTVS---QTDLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP----LKNLTKLVDILMN   92 (199)
T ss_dssp             HHTTCSSTTSEEC---HHHHTTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECC
T ss_pred             HHhCCCCCCCccC---HHHhcCCCEEECCCCCCC-Ccc--ccccCCCcCcCccccccccCccc----ccCCccccccccc
Confidence            3466677764332   345788999999999887 443  47888999999999998876532    2455689999999


Q ss_pred             CCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCcc
Q 040184           87 GSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGN  166 (699)
Q Consensus        87 ~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~  166 (699)
                      +|.+....  .+.++++|+.|+++++.... .+.  +..+++|+.|++++|++...  ..+..+++|++|++.+|++++ 
T Consensus        93 ~n~~~~~~--~l~~l~~L~~L~l~~~~~~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~-  164 (199)
T d2omxa2          93 NNQIADIT--PLANLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTD-  164 (199)
T ss_dssp             SSCCCCCG--GGTTCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-
T ss_pred             cccccccc--cccccccccccccccccccc-ccc--cchhhhhHHhhhhhhhhccc--ccccccccccccccccccccC-
Confidence            99886543  47899999999999988873 332  47889999999999988753  357889999999999999984 


Q ss_pred             CchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEE
Q 040184          167 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEAL  205 (699)
Q Consensus       167 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  205 (699)
                      ++. + ..+++|++|++++|++++.  +.++++++|++|
T Consensus       165 l~~-l-~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         165 LKP-L-ANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CGG-G-TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             Ccc-c-cCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            442 3 3478999999999999853  357888998876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.7e-15  Score=140.22  Aligned_cols=147  Identities=24%  Similarity=0.365  Sum_probs=62.4

Q ss_pred             CCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEE
Q 040184          126 NTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEAL  205 (699)
Q Consensus       126 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  205 (699)
                      +.+|++|++++|.+.+..  .+..+++|++|++++|++++ ++. + ..+++|++|++++|++++ ++ .+..+++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~~-~-~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IKP-L-ANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-ccc-c-ccCccccccccccccccc-cc-ccccccccccc
Confidence            344555555555544321  23444444444444444442 221 1 124455555555555442 22 24445555555


Q ss_pred             EccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcC
Q 040184          206 DLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL  285 (699)
Q Consensus       206 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  285 (699)
                      ++++|.+. .++.  +..+++++.+++++|.+.+  +..+..+++|+++++++|.+++. + .++++++|+.|++++|++
T Consensus       118 ~l~~~~~~-~~~~--l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         118 SLEHNGIS-DING--LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             ECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred             cccccccc-cccc--ccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCC
Confidence            55555443 3321  1234444444444444432  12233344444444444444422 1 144444444444444444


Q ss_pred             c
Q 040184          286 Y  286 (699)
Q Consensus       286 ~  286 (699)
                      +
T Consensus       191 ~  191 (210)
T d1h6ta2         191 S  191 (210)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=4.9e-15  Score=137.19  Aligned_cols=160  Identities=25%  Similarity=0.289  Sum_probs=70.8

Q ss_pred             CCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEE
Q 040184          126 NTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEAL  205 (699)
Q Consensus       126 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  205 (699)
                      ++++++|++++|.+...  ..++.+++|++|++++|++++ ++. + ..+++|++|++++|.+... + .+.++++|+.|
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~-~~~-l-~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-ITP-L-KNLTKLVDILMNNNQIADI-T-PLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccC-ccc-c-cCCcccccccccccccccc-c-ccccccccccc
Confidence            44555555555554432  123444445555555444442 221 2 2244555555555544421 1 24455555555


Q ss_pred             EccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcC
Q 040184          206 DLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL  285 (699)
Q Consensus       206 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  285 (699)
                      ++++|... .++.  +..+++|+.|++++|.+..  ...+..+++|++|++.+|.+++.  ..++++++|+.|++++|++
T Consensus       112 ~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         112 TLFNNQIT-DIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKV  184 (199)
T ss_dssp             ECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             cccccccc-cccc--cchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCC--ccccCCCCCCEEECCCCCC
Confidence            55555444 2221  1234445555555544432  12344445555555555554432  1244555555555555554


Q ss_pred             cCcCchhhhccCCCcE
Q 040184          286 YGNIPAWLGNLSSLYD  301 (699)
Q Consensus       286 ~~~~~~~~~~l~~L~~  301 (699)
                      ++ ++ .++++++|++
T Consensus       185 ~~-i~-~l~~L~~L~~  198 (199)
T d2omxa2         185 SD-IS-VLAKLTNLES  198 (199)
T ss_dssp             CC-CG-GGGGCTTCSE
T ss_pred             CC-Cc-cccCCCCCCc
Confidence            43 11 2444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.6e-16  Score=153.68  Aligned_cols=128  Identities=16%  Similarity=0.177  Sum_probs=58.6

Q ss_pred             cEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEE
Q 040184            5 RVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVA   84 (699)
Q Consensus         5 ~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~   84 (699)
                      +++|++++.+........+.  ..+..+.++...+....  .......+|++||++++.+........ +..+++|++|+
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~--~~~~~~~~L~~LdLs~~~i~~~~l~~l-~~~c~~L~~L~   77 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL--AEHFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLS   77 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC--CSCCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCSEEE
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch--hhhccCCCCCEEECCCCccCHHHHHHH-HHhCCCccccc
Confidence            35666666554211110111  23445555554433111  122334456666666554433221111 13344566666


Q ss_pred             ccCCcCccccchhcCCCCCCCEEEcccC-ccccccchhhhhCCCCCCEEEcCCC
Q 040184           85 LSGSGIHATFPKFLYNQHDLEYVDFSDS-NLKGEFLNWLLENNTNLNTLVLRNN  137 (699)
Q Consensus        85 ls~~~i~~~~~~~l~~~~~L~~L~ls~n-~~~~~~~~~~~~~l~~L~~L~Ls~n  137 (699)
                      +++|.++...+..+..+++|++|+++++ .+++.....++.++++|++|++++|
T Consensus        78 L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          78 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             ccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence            6665555555555555556666666553 3443333333345555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.9e-15  Score=128.83  Aligned_cols=119  Identities=15%  Similarity=0.181  Sum_probs=103.5

Q ss_pred             cccEEEccCCccCccCCccccccCccCeEEccCC-cCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184          495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHN-NLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV  573 (699)
Q Consensus       495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  573 (699)
                      ..+.++.+++.+. ..|..+..+++|++|++++| .++.+.++.|.++++|+.|++++|+|+...|..|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            4556888988888 56788999999999999876 588888889999999999999999999888999999999999999


Q ss_pred             ccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184          574 AHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS  620 (699)
Q Consensus       574 ~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~  620 (699)
                      ++|+++...+..+. ...++.+++++|||.|     +|+..|+..|.
T Consensus        88 s~N~l~~l~~~~~~-~~~l~~L~L~~Np~~C-----~C~~~~l~~~~  128 (156)
T d2ifga3          88 SFNALESLSWKTVQ-GLSLQELVLSGNPLHC-----SCALRWLQRWE  128 (156)
T ss_dssp             CSSCCSCCCSTTTC-SCCCCEEECCSSCCCC-----CGGGHHHHHHH
T ss_pred             cCCCCcccChhhhc-cccccccccCCCcccC-----CchHHHHHHHH
Confidence            99999977777664 4478999999999999     89887776664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.1e-14  Score=124.25  Aligned_cols=77  Identities=13%  Similarity=0.112  Sum_probs=44.1

Q ss_pred             cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCC-ccccCCCCCCEEeCCCCcccccCC----cccccCCCCC
Q 040184          495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP-VTFSNLNQVESLDISYNNLNGKIP----PQLVELNALA  569 (699)
Q Consensus       495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~  569 (699)
                      +|++|++++|+++...+..+..+++|++|++++|+++.... ..+..+++|++|++++|.++. .|    ..+..+|+|+
T Consensus        64 ~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_          64 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCS
T ss_pred             chhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcC
Confidence            44455555555544444445556666666666666654321 345666677777777776653 33    2456667777


Q ss_pred             eee
Q 040184          570 FFS  572 (699)
Q Consensus       570 ~L~  572 (699)
                      +||
T Consensus       143 ~LD  145 (162)
T d1a9na_         143 VLD  145 (162)
T ss_dssp             EET
T ss_pred             eeC
Confidence            665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=2.2e-13  Score=114.41  Aligned_cols=119  Identities=18%  Similarity=0.185  Sum_probs=92.3

Q ss_pred             cEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEE
Q 040184            5 RVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVA   84 (699)
Q Consensus         5 ~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~   84 (699)
                      |+|+|++|+++ .++.  ++++++|++|++++|.++ .+|. .+..+++|+.|++++|.+.....    +..+++|++|+
T Consensus         1 R~L~Ls~n~l~-~l~~--l~~l~~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~~N~i~~l~~----~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALENVDG----VANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCCCGG----GTTCSSCCEEE
T ss_pred             CEEEcCCCCCC-CCcc--cccCCCCCEEECCCCccC-cchh-hhhhhhcccccccccccccccCc----cccccccCeEE
Confidence            68999999999 7775  899999999999999998 6774 58899999999999998876531    24555888888


Q ss_pred             ccCCcCcccc-chhcCCCCCCCEEEcccCcccc--ccchhhhhCCCCCCEE
Q 040184           85 LSGSGIHATF-PKFLYNQHDLEYVDFSDSNLKG--EFLNWLLENNTNLNTL  132 (699)
Q Consensus        85 ls~~~i~~~~-~~~l~~~~~L~~L~ls~n~~~~--~~~~~~~~~l~~L~~L  132 (699)
                      +++|.++... ...+..+++|++|++++|.+++  ..+..+...+|+|+.+
T Consensus        72 l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8888887553 2567788888888888888763  2344455667777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.4e-13  Score=121.92  Aligned_cols=128  Identities=17%  Similarity=0.133  Sum_probs=88.2

Q ss_pred             cCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCC
Q 040184           98 LYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPR  177 (699)
Q Consensus        98 l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~  177 (699)
                      +.++.+++.|++++|+++ .++. ++..+++|++|++++|.++..  ..+..+++|++|++++|+++ .++..++..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccc
Confidence            445667777777777776 4543 346677788888888877754  34677778888888888877 566666666778


Q ss_pred             CcEEeCcCCcccccCC-ccccCCCCCCEEEccCCcCCCccch---HHhhcCCCCcEEE
Q 040184          178 LVYLNLSRNDFNGSIP-SSIGDMNSLEALDLSHNQLTGEIPE---HLAMSCFNLEFLV  231 (699)
Q Consensus       178 L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~  231 (699)
                      |++|++++|++..... ..+..+++|++|++++|.++ ..|.   .++..+++|+.||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            8888888888764321 45677888888888888876 5442   2344567777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=5e-14  Score=142.77  Aligned_cols=137  Identities=20%  Similarity=0.185  Sum_probs=69.3

Q ss_pred             CCCCCCEEEccCCcCCCccchH---HhhcCCCCcEEEccCCcCCcc-----CcccccCCCCCcEEEccCCcCCcc----C
Q 040184          198 DMNSLEALDLSHNQLTGEIPEH---LAMSCFNLEFLVLSENSLLGQ-----LFSKKNYLRKLVSLHLDANYFTGE----I  265 (699)
Q Consensus       198 ~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~i~~~----~  265 (699)
                      ..+.|+.+++++|.+.......   ....++.|++|++++|.+...     +...+..+++|+.|++++|.++..    +
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            3455666666666554221111   112355666666666665421     223345566666666666665422    2


Q ss_pred             CccCcCCCCCceEECCCCcCcCcCchhh----hc--cCCCcEEeccCCcccccC----Ccccc-CCCCCcEEEcccccCc
Q 040184          266 PKSLSNCSHLEGLYMSDNNLYGNIPAWL----GN--LSSLYDIMMASNHLQGPI----PLEFC-QLNYLQILDLSENNIS  334 (699)
Q Consensus       266 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~--l~~L~~L~l~~n~~~~~~----~~~~~-~l~~L~~L~l~~n~i~  334 (699)
                      ...+..+++|++|++++|.+++.....+    ..  .+.|++|++++|.+....    ...+. +.++|+.|++++|++.
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            2345556666666766666654322222    21  245666666666654321    11121 3456666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=5.6e-14  Score=142.38  Aligned_cols=245  Identities=19%  Similarity=0.170  Sum_probs=168.1

Q ss_pred             CCcccccCCCCCCEEeCCCCcccccC---CcccccCCCCCcEEEcccCcccccccc--------ccCCCCCccccEEEcc
Q 040184           18 ISSSPLIHLTSIERLFLSYNQFQIPF---SLEPFFNNSKLKVFSGECNEIFVESES--------SHSMTPKFQLESVALS   86 (699)
Q Consensus        18 i~~~~~~~l~~L~~L~Ls~n~~~~~~---~~~~~~~l~~L~~L~L~~n~~~~~~~~--------~~~~~~~~~L~~L~ls   86 (699)
                      +.. ++...+.|++|+|++|.+....   -...+...++|+.++++++........        ......+++|++|+++
T Consensus        23 l~~-~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          23 VFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TSH-HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHH-HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            444 5777899999999999875311   112456789999999987754322110        0111334589999999


Q ss_pred             CCcCccc----cchhcCCCCCCCEEEcccCccccccchhh------------hhCCCCCCEEEcCCCcCccc----CCCC
Q 040184           87 GSGIHAT----FPKFLYNQHDLEYVDFSDSNLKGEFLNWL------------LENNTNLNTLVLRNNSLSGP----FRMP  146 (699)
Q Consensus        87 ~~~i~~~----~~~~l~~~~~L~~L~ls~n~~~~~~~~~~------------~~~l~~L~~L~Ls~n~i~~~----~~~~  146 (699)
                      +|.++..    +...+..+++|+.|++++|.+.......+            ....+.|+.+.+++|.+...    +...
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            9988765    33455678899999999998763221111            23568899999999987643    2223


Q ss_pred             CCCCCCCCEEEccCccCCccC----chhhhhcCCCCcEEeCcCCccccc----CCccccCCCCCCEEEccCCcCCCccch
Q 040184          147 IQPHWHLDTLYVSKNFFQGNI----PLEIGVYFPRLVYLNLSRNDFNGS----IPSSIGDMNSLEALDLSHNQLTGEIPE  218 (699)
Q Consensus       147 ~~~l~~L~~L~l~~n~i~~~~----~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~  218 (699)
                      +..++.|++|++++|+++...    .......+++|+.|++++|.++..    +...+..+++|++|++++|.+++....
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            456789999999999987321    112234478899999999998643    345677899999999999998744333


Q ss_pred             HHhh-----cCCCCcEEEccCCcCCccC----cccc-cCCCCCcEEEccCCcCCc
Q 040184          219 HLAM-----SCFNLEFLVLSENSLLGQL----FSKK-NYLRKLVSLHLDANYFTG  263 (699)
Q Consensus       219 ~~~~-----~l~~L~~L~L~~n~l~~~~----~~~~-~~l~~L~~L~L~~n~i~~  263 (699)
                      .+..     ..+.|++|++++|.+....    ...+ .+.++|+.|++++|.+..
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            3321     2467999999999986432    2223 257889999999999873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=7.1e-13  Score=111.27  Aligned_cols=59  Identities=20%  Similarity=0.245  Sum_probs=32.9

Q ss_pred             cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCC-ccccCCCCCCEEeCCCCccc
Q 040184          495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP-VTFSNLNQVESLDISYNNLN  555 (699)
Q Consensus       495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~  555 (699)
                      +|+.|++++|.+++ +| .+..+++|++|++++|+++.... ..+..+++|++|++++|+++
T Consensus        44 ~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          44 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            34444444444442 22 35566666666666666664432 45566666666666666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.6e-12  Score=111.10  Aligned_cols=89  Identities=17%  Similarity=0.167  Sum_probs=73.1

Q ss_pred             CCcccEEEccCC-ccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCee
Q 040184          493 LNKMYGVDLSCN-KLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFF  571 (699)
Q Consensus       493 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  571 (699)
                      ++++++|++++| .++...+..|.++++|+.|+|++|+|+.+.+..|..+++|++|+|++|+|+...+..+. ..+|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-ccccccc
Confidence            347777888665 47767777899999999999999999988899999999999999999999955555554 4579999


Q ss_pred             ecccCcCcccC
Q 040184          572 SVAHNNLSGKI  582 (699)
Q Consensus       572 ~l~~N~l~~~~  582 (699)
                      +|++|++.+.+
T Consensus       109 ~L~~Np~~C~C  119 (156)
T d2ifga3         109 VLSGNPLHCSC  119 (156)
T ss_dssp             ECCSSCCCCCG
T ss_pred             ccCCCcccCCc
Confidence            99999997644

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=2.4e-13  Score=124.84  Aligned_cols=144  Identities=22%  Similarity=0.246  Sum_probs=98.9

Q ss_pred             CccEEECCCC--CCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCC
Q 040184          370 SIVTLDLSYN--SFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGD  447 (699)
Q Consensus       370 ~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~  447 (699)
                      ..+.+++.+.  .+. ..+..+..+++|++|++++|+|+.. + .+..+++|+.|++++|.++. +|....         
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~---------   90 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDA---------   90 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHH---------
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccc-cccccc---------
Confidence            3455555543  222 3466788899999999999998843 3 47788889999999888763 232111         


Q ss_pred             CCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccC
Q 040184          448 NDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSH  527 (699)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  527 (699)
                                                                  .+++|+.|++++|+++..  ..+..+++|+.|++++
T Consensus        91 --------------------------------------------~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~  124 (198)
T d1m9la_          91 --------------------------------------------VADTLEELWISYNQIASL--SGIEKLVNLRVLYMSN  124 (198)
T ss_dssp             --------------------------------------------HHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESE
T ss_pred             --------------------------------------------cccccccccccccccccc--cccccccccccccccc
Confidence                                                        123678888888888743  3477788888888888


Q ss_pred             CcCcccCC-ccccCCCCCCEEeCCCCcccccCCcc----------cccCCCCCeee
Q 040184          528 NNLTGVIP-VTFSNLNQVESLDISYNNLNGKIPPQ----------LVELNALAFFS  572 (699)
Q Consensus       528 N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~  572 (699)
                      |+++.... ..+..+++|+.|++++|++....+..          +..+|+|+.||
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             chhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            88875432 45778888888888888876443322          45677777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=1e-12  Score=120.51  Aligned_cols=108  Identities=23%  Similarity=0.216  Sum_probs=57.3

Q ss_pred             hCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCC
Q 040184          124 ENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLE  203 (699)
Q Consensus       124 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~  203 (699)
                      ..+++|++|+|++|+++..  ..+..+++|++|++++|.++ .+|.. ...+++|++|++++|.++..  ..+..+++|+
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~-~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~  118 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENL-DAVADTLEELWISYNQIASL--SGIEKLVNLR  118 (198)
T ss_dssp             HHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSH-HHHHHHCCEEECSEEECCCH--HHHHHHHHSS
T ss_pred             hcccccceeECcccCCCCc--ccccCCccccChhhcccccc-ccccc-cccccccccccccccccccc--cccccccccc
Confidence            4555566666665555532  13455555555555555554 34322 22234566666666666532  2355566666


Q ss_pred             EEEccCCcCCCccch-HHhhcCCCCcEEEccCCcCC
Q 040184          204 ALDLSHNQLTGEIPE-HLAMSCFNLEFLVLSENSLL  238 (699)
Q Consensus       204 ~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~  238 (699)
                      .|++++|.++ .++. ..+..+++|+.|++++|.+.
T Consensus       119 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         119 VLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccchhc-cccccccccCCCccceeecCCCccc
Confidence            6666666665 4432 23345556666666665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.6e-07  Score=82.09  Aligned_cols=69  Identities=33%  Similarity=0.308  Sum_probs=44.0

Q ss_pred             hhhhcCCCCcEEeCcCCcccccC--CccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCc
Q 040184          170 EIGVYFPRLVYLNLSRNDFNGSI--PSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG  239 (699)
Q Consensus       170 ~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  239 (699)
                      .++..+++|++|+|++|+|+...  +..+..+++|+.|++++|.++ .+++..+....+|+.|++++|.+..
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCc
Confidence            34445777888888888877532  334566777777788777777 5555333344556666666666643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.6e-07  Score=79.81  Aligned_cols=66  Identities=21%  Similarity=0.216  Sum_probs=29.5

Q ss_pred             cccCccCeEEccCCcCcccC--CccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcc
Q 040184          515 SKLTRIRALNLSHNNLTGVI--PVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG  580 (699)
Q Consensus       515 ~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  580 (699)
                      ..+++|++|+|++|+|+...  +..+..+++|+.|+|++|.|+...+-.......|+.|++++|++++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            34445555555555554331  1223444555555555555543222122223345555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.53  E-value=1.6e-05  Score=69.36  Aligned_cols=12  Identities=8%  Similarity=0.194  Sum_probs=5.1

Q ss_pred             CCCCCEEEccCC
Q 040184          199 MNSLEALDLSHN  210 (699)
Q Consensus       199 l~~L~~L~L~~n  210 (699)
                      .++|++|++++|
T Consensus        99 n~sL~~L~l~~n  110 (167)
T d1pgva_          99 TQSIVEFKADNQ  110 (167)
T ss_dssp             TCCCSEEECCCC
T ss_pred             CCcCCEEECCCC
Confidence            334444444444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.45  E-value=4e-05  Score=66.67  Aligned_cols=40  Identities=10%  Similarity=0.010  Sum_probs=21.2

Q ss_pred             ccCCCCCcEEEccCCcCCcc-------CCccCcCCCCCceEECCCCc
Q 040184          245 KNYLRKLVSLHLDANYFTGE-------IPKSLSNCSHLEGLYMSDNN  284 (699)
Q Consensus       245 ~~~l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~l~~n~  284 (699)
                      +...+.|++|++++|.+...       +...+...++|+.|+++.+.
T Consensus        96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            34455566666665544321       22334445677777776553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.10  E-value=6.2e-05  Score=65.41  Aligned_cols=13  Identities=38%  Similarity=0.578  Sum_probs=6.4

Q ss_pred             CCCCCCCEEEccc
Q 040184           99 YNQHDLEYVDFSD  111 (699)
Q Consensus        99 ~~~~~L~~L~ls~  111 (699)
                      .+.+.|+.|++++
T Consensus        14 ~~~~~L~~L~L~~   26 (166)
T d1io0a_          14 NNDPDLEEVNLNN   26 (166)
T ss_dssp             TTCTTCCEEECTT
T ss_pred             hcCCCCcEEEcCC
Confidence            3444555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.89  E-value=0.00025  Score=61.36  Aligned_cols=116  Identities=14%  Similarity=0.140  Sum_probs=63.3

Q ss_pred             hhhhhCCCCCCEEEcCC-CcCccc----CCCCCCCCCCCCEEEccCccCCccCchhh---hhcCCCCcEEeCcCCccccc
Q 040184          120 NWLLENNTNLNTLVLRN-NSLSGP----FRMPIQPHWHLDTLYVSKNFFQGNIPLEI---GVYFPRLVYLNLSRNDFNGS  191 (699)
Q Consensus       120 ~~~~~~l~~L~~L~Ls~-n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~---~~~~~~L~~L~L~~n~i~~~  191 (699)
                      ..+..+.+.|++|++++ +.++..    +..++...++|++|++++|.++......+   ....+.++.+++++|.+...
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            34446778899999987 445422    22335567778888888887763322222   22346677777777766532


Q ss_pred             ----CCccccCCCCCCEEEcc--CCcCCCccchHH---hhcCCCCcEEEccCC
Q 040184          192 ----IPSSIGDMNSLEALDLS--HNQLTGEIPEHL---AMSCFNLEFLVLSEN  235 (699)
Q Consensus       192 ----~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~---~~~l~~L~~L~L~~n  235 (699)
                          +...+...++|+.++|+  +|.+....-..+   ....++|++|+++.+
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence                22445566667765553  444432111111   123455555555443