Citrus Sinensis ID: 040194

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MNRPAIVFLVVATGLGILSLSGPAESLSCSDDCPAPNPPPPRVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKITMFD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEHHcHHHEccccccHHEcccccccccccHHHHccccHHHHccHHHHHHHccccccccHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
MNRPAIVFLVVATGLgilslsgpaeslscsddcpapnpppprvechkvekrfapclhyikgkskhpskdccrgvKKISKHVKTKADKKALCKCIQRCLrgvdhyakscipsipkkcginftlppvdaktkcskitmfd
Flexible Loop (DISEMBL)
MNRPAIVFLVVATGLGILSLSGPAESLSCSDDCPAPNPPPPRVECHKVEKRFAPCLHyikgkskhpskdccrgVKKIskhvktkadkkaLCKCIQRCLRGVDHYAKSCipsipkkcginftlppvdaktkcskitmfd
Low Complexity Region (SEG)
MNRPAIVFLVVATGLGILSLSGPAESLSCSDDCpapnppppRVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKITMFD
Disordered region (IsUnstruct)
****AIVFLVVATGLGILSL************************CHKVEKRFAPCLHYIKGKS****KDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKT*********
Disordered Region (DISOPRED)
***PAIVFLVVATGLGILSLSGPAESLSCSDDCPAPNPPPPRVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKITMF*
Disordered Region (DISEMBL)
MNRPAIVFLVVATGLGILSLS**************PNPPPPRVECHKVEKRFAPCLHYIKG**********RGVKKI**********KALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKITMFD
Disordered Region (DISPRO)
*NRPAIVFLVVATGLGILSLSGPAESLSCSDDCPAPNPPPPRVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKITMFD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNRPAIVFLVVATGLGILSLSGPAESLSCSDDCPAPNPPPPRVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKITMFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
P55958	133	Probable non-specific lip	N/A	no	0.673	0.699	0.473	1e-18
O04403	133	Probable non-specific lip	N/A	no	0.746	0.774	0.447	2e-18
P19656	120	Non-specific lipid-transf	N/A	no	0.652	0.75	0.333	1e-12
Q43194	122	Non-specific lipid-transf	N/A	no	0.666	0.754	0.333	1e-12
Q43193	118	Non-specific lipid-transf	N/A	no	0.659	0.771	0.329	3e-12
Q40905	138	Probable non-specific lip	N/A	no	0.746	0.746	0.342	1e-11
O04404	176	Probable non-specific lip	N/A	no	0.673	0.528	0.329	5e-11
P43217	139	Probable non-specific lip	N/A	no	0.673	0.669	0.319	2e-10
Q43767	115	Non-specific lipid-transf	N/A	no	0.637	0.765	0.336	3e-10
O04004	118	Non-specific lipid-transf	N/A	no	0.630	0.737	0.366	3e-10

>sp|P55958|NLT21_PARJU Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 2/95 (2%)

Query: 45  CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHY 104
           C KV +   PCLH++KG+ K PSK+CC G KK+S+ VKT   K+  CKCI R  +G+   
Sbjct: 35  CGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGI 94

Query: 105 AKSCIPSIPKKCGINFTLPPVDAKTKCSKI--TMF 137
               +  +PKKC I  TLPP+ A   CSKI  T+F
Sbjct: 95  KNELVAEVPKKCDIKTTLPPITADFDCSKIQSTIF 129

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
Parietaria judaica (taxid: 33127)

>sp|O04403|NLT22_PARJU Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 59/105 (56%), Gaps = 2/105 (1%)

Query: 35  APNPPPPRVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCI 94
           A  P P    C KV     PCL ++KG+ K PSK CC G KK+S+ VKT   K+  CKCI
Sbjct: 25  ASAPAPGEGPCGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKKLSEEVKTTEQKREACKCI 84

Query: 95  QRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI--TMF 137
               +G+       +  +PKKCGI  TLPP+ A   CSKI  T+F
Sbjct: 85  VAATKGISGIKNELVAEVPKKCGITTTLPPITADFDCSKIESTIF 129

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Parietaria judaica (taxid: 33127)

>sp|P19656|NLTP_MAIZE Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V    APC+ Y +G+   PS  CC GV+ ++   +T AD++A C C++    GV 
Sbjct: 29  ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS 88

Query: 103 HYAKSCIPSIPKKCGINFTLP-PVDAKTKCSKI 134
                   SIP KCG+  ++P  +   T CS++
Sbjct: 89  GLNAGNAASIPSKCGV--SIPYTISTSTDCSRV 119

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Zea mays (taxid: 4577)

>sp|Q43194|NLTP2_SORBI Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           V C +V     PCL Y +G+   PS  CC GV+ ++   +T AD++A C C++   RG+ 
Sbjct: 31  VTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIR 90

Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKIT 135
                   SIP KCG++     +   T CS+++
Sbjct: 91  GLNVGKAASIPSKCGVSIPY-TISTSTDCSRVS 122

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Sorghum bicolor (taxid: 4558)

>sp|Q43193|NLTP1_SORBI Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V    A CL Y +G+   PS  CC GV+ ++   +T AD++A C C++   RG+ 
Sbjct: 27  ISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIS 86

Query: 103 HYAKSCIPSIPKKCGINFTLP-PVDAKTKCSKIT 135
                   SIP KCG+  ++P  +   T CS+++
Sbjct: 87  GLNAGNAASIPSKCGV--SVPYTISTSTDCSRVS 118

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Sorghum bicolor (taxid: 4558)

>sp|Q40905|NLT13_PARJU Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 2/105 (1%)

Query: 35  APNPPPPRVE-CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKC 93
           AP P P   E C  V     PCL +++GK K PSK CC G K++    KT   +   C+C
Sbjct: 29  APAPAPGSEETCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACEC 88

Query: 94  IQRCLRGVDHYAKSCIPSIPKKCGI-NFTLPPVDAKTKCSKITMF 137
           IQ  ++         +  +PK CGI +  LPP+D    C  + + 
Sbjct: 89  IQTAMKTYSDIDGKLVSEVPKHCGIVDSKLPPIDVNMDCKTLGVL 133

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Parietaria judaica (taxid: 33127)

>sp|O04404|NLT12_PARJU Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 45  CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHY 104
           C  V +   PCL +++GK K PSK CC G K++    KT   +   C+CIQ  ++     
Sbjct: 41  CGTVVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGLQRVHACECIQTAMKTYSDI 100

Query: 105 AKSCIPSIPKKCGI-NFTLPPVDAKTKCSKITMF 137
               +  +PK CGI +  LPP+D    C  + + 
Sbjct: 101 DGKLVSEVPKHCGIVDSKLPPIDVNMDCKTLGVV 134

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Parietaria judaica (taxid: 33127)

>sp|P43217|NLT11_PARJU Probable non-specific lipid-transfer protein (Fragment) OS=Parietaria judaica GN=PMAI PE=1 SV=3

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 45  CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHY 104
           C  + +   PCL +++GK K PSK CC G K++    KT   +   C+CIQ  ++     
Sbjct: 4   CGTMVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDI 63

Query: 105 AKSCIPSIPKKCGI-NFTLPPVDAKTKCSKITMF 137
               +  +PK CGI +  LPP+D    C  + + 
Sbjct: 64  DGKLVSEVPKHCGIVDSKLPPIDVNMDCKTVGVV 97

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Parietaria judaica (taxid: 33127)

>sp|Q43767|NLT41_HORVU Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V    +PC+ Y +G    P   CC GVK+++   ++ ADK+A CKCI+    G++
Sbjct: 27  ISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSAAGGLN 86

Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
               + IPS+   CG++     + A   CSKI
Sbjct: 87  AGKAAGIPSM---CGVSVPY-AISASVDCSKI 114

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|O04004|NLTP6_AMBAR Non-specific lipid-transfer protein OS=Ambrosia artemisiifolia PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 45  CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHY 104
           C  V+   APC  ++ G+   PSK CC GV  ++   KTKAD+ A+C CI+   + + + 
Sbjct: 30  CDTVQNILAPCAGFLTGQ--EPSKACCTGVNNLNNSRKTKADRVAVCNCIKELTKSIAYD 87

Query: 105 AKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
            K  +P +  KCG+    P VD    CSK+
Sbjct: 88  PKR-MPLLSTKCGVKPDFPAVDKNLDCSKL 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Ambrosia artemisiifolia (taxid: 4212)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
157389800	243	chimaeric Parj1 Parj2 protein [synthetic	0.753	0.427	0.452	3e-17
2497750	133	RecName: Full=Probable non-specific lipi	0.673	0.699	0.473	7e-17
3914131	133	RecName: Full=Probable non-specific lipi	0.746	0.774	0.447	1e-16
449478193	140	PREDICTED: non-specific lipid-transfer p	0.673	0.664	0.457	1e-15
356506061	118	PREDICTED: probable non-specific lipid-t	0.688	0.805	0.378	4e-15
224130534	127	predicted protein [Populus trichocarpa]	0.673	0.732	0.436	5e-15
449433036	120	PREDICTED: non-specific lipid-transfer p	0.644	0.741	0.466	1e-14
255564729	123	Nonspecific lipid-transfer protein 3 pre	0.659	0.739	0.445	5e-14
537637	120	lipid transfer protein [Nicotiana tabacu	0.681	0.783	0.360	3e-13
537639	118	lipid transfer protein [Nicotiana tabacu	0.673	0.788	0.372	7e-13

>gi|157389800|emb|CAM32527.1| chimaeric Parj1 Parj2 protein [synthetic construct]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 62/106 (58%), Gaps = 2/106 (1%)

Query: 34  PAPNPPPPRVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKC 93
           PAP        C KV +   PCLH++KG+ K PSK+CC G KK+S+ VKT   K+  CKC
Sbjct: 134 PAPEKAEFEEACGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKC 193

Query: 94  IQRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI--TMF 137
           I R  +G+       +  +PKKC I  TLPP+ A   CSKI  T+F
Sbjct: 194 IVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFDCSKIQSTIF 239

Source: synthetic construct

Species: synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|2497750|sp|P55958.1|NLT21_PARJU RecName: Full=Probable non-specific lipid-transfer protein 2; Short=LTP 2; AltName: Full=Allergen Par j II; AltName: Full=Major pollen allergen Par j 2.0101; AltName: Full=Protein P2; AltName: Allergen=Par j 2.0101; Flags: Precursor gi|1532054|emb|CAA65121.1| P2 protein [Parietaria judaica]

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 2/95 (2%)

Query: 45  CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHY 104
           C KV +   PCLH++KG+ K PSK+CC G KK+S+ VKT   K+  CKCI R  +G+   
Sbjct: 35  CGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGI 94

Query: 105 AKSCIPSIPKKCGINFTLPPVDAKTKCSKI--TMF 137
               +  +PKKC I  TLPP+ A   CSKI  T+F
Sbjct: 95  KNELVAEVPKKCDIKTTLPPITADFDCSKIQSTIF 129

Source: Parietaria judaica

Species: Parietaria judaica

Genus: Parietaria

Family: Urticaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3914131|sp|O04403.1|NLT22_PARJU RecName: Full=Probable non-specific lipid-transfer protein 2; Short=LTP 2; AltName: Full=Allergen Par j II; AltName: Full=Major pollen allergen Par j 2.0102; AltName: Full=Protein P8; AltName: Allergen=Par j 2.0102; Flags: Precursor gi|1532056|emb|CAA65122.1| P8 protein [Parietaria judaica]

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 59/105 (56%), Gaps = 2/105 (1%)

Query: 35  APNPPPPRVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCI 94
           A  P P    C KV     PCL ++KG+ K PSK CC G KK+S+ VKT   K+  CKCI
Sbjct: 25  ASAPAPGEGPCGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKKLSEEVKTTEQKREACKCI 84

Query: 95  QRCLRGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI--TMF 137
               +G+       +  +PKKCGI  TLPP+ A   CSKI  T+F
Sbjct: 85  VAATKGISGIKNELVAEVPKKCGITTTLPPITADFDCSKIESTIF 129

Source: Parietaria judaica

Species: Parietaria judaica

Genus: Parietaria

Family: Urticaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478193|ref|XP_004155246.1| PREDICTED: non-specific lipid-transfer protein-like [Cucumis sativus]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 1/94 (1%)

Query: 44  ECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDH 103
            C  V +  APCL +IKG  K PS  CC GVK++++  KTK DK ALC+C+++ L  +  
Sbjct: 32  SCVPVAQALAPCLGFIKGNGK-PSASCCSGVKQLARDTKTKKDKVALCECVKKSLSVIGT 90

Query: 104 YAKSCIPSIPKKCGINFTLPPVDAKTKCSKITMF 137
           Y  S IP IPK+CG++  +PP+   T CSK+T +
Sbjct: 91  YDPSRIPLIPKQCGVSVQIPPIKNSTDCSKVTGY 124

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506061|ref|XP_003521806.1| PREDICTED: probable non-specific lipid-transfer protein 1-like [Glycine max]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 57/95 (60%)

Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C  V +  APC  +++G SK PS  CC G+KK+S    T  ++ A+C+C++  L  + 
Sbjct: 23  ISCATVIEEVAPCTSFLQGGSKQPSVACCNGIKKLSGEAGTHQNRTAICQCLKEGLATIG 82

Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKITMF 137
           +Y    +P +PK CG++ TLPP+D  T CS I+  
Sbjct: 83  NYDPKRVPQVPKDCGLSATLPPIDKNTDCSNISFM 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130534|ref|XP_002320861.1| predicted protein [Populus trichocarpa] gi|222861634|gb|EEE99176.1| predicted protein [Populus trichocarpa]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 60/94 (63%), Gaps = 1/94 (1%)

Query: 39  PPPRVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCL 98
           P  +V C  +  +   C++YI  KSK PSK CC GVK+IS  VK+K+D+K  C+C++  L
Sbjct: 30  PDDKVSCATIVSKLTSCINYISDKSKDPSKTCCAGVKEISGFVKSKSDRKDACECLKNTL 89

Query: 99  RGVDHYAKSCIPSIPKKCGINFTLPPVDAKTKCS 132
             +  Y  S IP++PK CG++  LPP+ + T CS
Sbjct: 90  SKI-KYDPSRIPTLPKNCGVSLVLPPISSSTDCS 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433036|ref|XP_004134304.1| PREDICTED: non-specific lipid-transfer protein-like [Cucumis sativus]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 44  ECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDH 103
            C  V +  APCL +IKG  K PS  CC GVK++++  KTK DK ALC+C+++ L  +  
Sbjct: 32  SCVPVAQALAPCLGFIKGNGK-PSASCCSGVKQLARDTKTKKDKVALCECVKKSLSVIGT 90

Query: 104 YAKSCIPSIPKKCGINFTLPPVDAKTKCSK 133
           Y  S IP IPK+CG++  +PP+   T CSK
Sbjct: 91  YDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 120

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564729|ref|XP_002523359.1| Nonspecific lipid-transfer protein 3 precursor, putative [Ricinus communis] gi|223537447|gb|EEF39075.1| Nonspecific lipid-transfer protein 3 precursor, putative [Ricinus communis]

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           V C  V  +  PCL Y+ GKS  PSK CC GVK++    KTK DK+A+C+C+++ L  + 
Sbjct: 32  VPCSDVVTKVIPCLDYVAGKSNDPSKPCCGGVKQLWDLTKTKPDKQAVCECLKKQLSPI- 90

Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
            Y  + I  +PKKCG++FTLPP+  K  C+ +
Sbjct: 91  KYDPNRIAQLPKKCGLSFTLPPITPKYDCTTV 122

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|537637|gb|AAA21437.1| lipid transfer protein [Nicotiana tabacum]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 44  ECHKVEKRFAPCLHYIKGKSK---HPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRG 100
            C  V  + APCL YI+ + K   +PS  CC G+  I +  KTK D+ A+C C++     
Sbjct: 24  SCQTVTTQLAPCLSYIQNRVKGGGNPSVPCCTGINNIYELAKTKEDRVAICNCLKNAFIH 83

Query: 101 VDHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKITMF 137
             +   + +  +PKKCGI+F +PP+D    C+ I+M+
Sbjct: 84  AGNVNPTLVAELPKKCGISFNMPPIDKNYDCNTISMY 120

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|537639|gb|AAA21438.1| lipid transfer protein [Nicotiana tabacum]

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 44  ECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDH 103
            C  V  + APCL YI+G    PS  CC G+  I +  KTK D+ A+C C++       +
Sbjct: 26  SCPTVTTQLAPCLSYIQGGG-DPSVPCCTGINNIYELAKTKEDRVAICNCLKTAFTHAGN 84

Query: 104 YAKSCIPSIPKKCGINFTLPPVDAKTKCSKITMF 137
              + +  +PKKCGI+F +PP+D    C+ I+M+
Sbjct: 85  VNPTLVAQLPKKCGISFNMPPIDKNYDCNTISMY 118

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
UNIPROTKB|Q84N29	122	LTP3 "Probable non-specific li	0.659	0.745	0.260	6.4e-12
TAIR|locus:2168474	115	LTP3 "lipid transfer protein 3	0.644	0.773	0.333	9.4e-11
TAIR|locus:2168459	112	LTP4 "lipid transfer protein 4	0.623	0.767	0.333	2e-10
TAIR|locus:2181022	116	AT5G01870 [Arabidopsis thalian	0.637	0.758	0.302	1.4e-09
UNIPROTKB|P83434	91	P83434 "Non-specific lipid-tra	0.630	0.956	0.318	3.6e-09
TAIR|locus:2081840	119	LTP12 "lipid transfer protein	0.659	0.764	0.268	3.6e-09
TAIR|locus:2827393	121	AT2G15325 [Arabidopsis thalian	0.623	0.710	0.311	7.6e-09
TAIR|locus:2055828	123	LTP "lipid transfer protein" [	0.652	0.731	0.301	9.7e-09
TAIR|locus:2062116	116	AT2G18370 [Arabidopsis thalian	0.586	0.698	0.329	9.7e-09
TAIR|locus:504955533	119	AT4G33355 [Arabidopsis thalian	0.623	0.722	0.302	2e-08

UNIPROTKB|Q84N29 LTP3 "Probable non-specific lipid-transfer protein 3" [Triticum aestivum (taxid:4565)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 24/92 (26%), Positives = 50/92 (54%)

Query:    43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
             + C +V+ + APC+ Y+ G++   SK+CC GV+ ++   ++  D+K  C+C++     + 
Sbjct:    31 LSCGQVDSKLAPCVAYVTGRASSISKECCSGVQGLNGLARSSPDRKIACRCLKSLATSIK 90

Query:   103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
                   +  +P KCG++   P +   T C+ +
Sbjct:    91 SINMGKVSGVPGKCGVSVPFP-ISMSTNCNNV 121

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:2168474 LTP3 "lipid transfer protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 31/93 (33%), Positives = 45/93 (48%)

Query:    43 VECHKVEKRFAPCLHYI-KGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGV 101
             + C  V    APC  Y+ KG    PS  CC GVK ++   KT  D++  C+CIQ   + +
Sbjct:    25 ISCGTVAGSLAPCATYLSKGGLVPPS--CCAGVKTLNSMAKTTPDRQQACRCIQSTAKSI 82

Query:   102 DHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
                  S    +P KCG++   P +   T C+ I
Sbjct:    83 SGLNPSLASGLPGKCGVSIPYP-ISMSTNCNNI 114

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005618 "cell wall" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2168459 LTP4 "lipid transfer protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 31/93 (33%), Positives = 48/93 (51%)

Query:    43 VECHKVEKRFAPCLHYI-KGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGV 101
             + C  V    +PCL Y+ KG    P   CC GVKK++   +T  D++  C+C+Q   +GV
Sbjct:    25 ITCGTVASSLSPCLGYLSKGGVVPPP--CCAGVKKLNGMAQTTPDRQQACRCLQSAAKGV 82

Query:   102 DHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
             +    S    +P KCG++   P +   T C+ I
Sbjct:    83 N---PSLASGLPGKCGVSIPYP-ISTSTNCATI 111

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2181022 AT5G01870 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 29/96 (30%), Positives = 50/96 (52%)

Query:    43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
             + C+ V+    PC+ Y+      P   CC G++ +SK   + +DK+ +C+CI+  +  V 
Sbjct:    24 ISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVS 82

Query:   103 H---YAKSCIPSIPKKCGINFTLP-PVDAKTKCSKI 134
             +   Y K    ++P KCG+   LP  +D  T C+ I
Sbjct:    83 YSSIYLKKAA-ALPGKCGVK--LPYKIDPSTNCNSI 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P83434 P83434 "Non-specific lipid-transfer protein 1" [Vigna radiata var. radiata (taxid:3916)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 29/91 (31%), Positives = 46/91 (50%)

Query:    45 CHKVEKRFAPCLHYI-KGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDH 103
             C +V+   A C+ ++ KG    PS  CC GVK I    +T AD++A+C C++     V  
Sbjct:     3 CGQVQGNLAQCIGFLQKGGVVPPS--CCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRG 60

Query:   104 YAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
                +   ++P KCG+N     +   T C+ I
Sbjct:    61 INPNNAEALPGKCGVNIPYK-ISTSTNCNSI 90

GO:0005215 "transporter activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IDA

GO:0008289 "lipid binding" evidence=IDA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IDA

TAIR|locus:2081840 LTP12 "lipid transfer protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/93 (26%), Positives = 46/93 (49%)

Query:    43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
             ++C  V    A CL Y+      PS+ CC GVK + +  +T  D+K +C+C++   + + 
Sbjct:    26 IQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIK 84

Query:   103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKIT 135
                   + ++P  CG++   P +   T C  I+
Sbjct:    85 GLNTDLVAALPTTCGVSIPYP-ISFSTNCDSIS 116

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2827393 AT2G15325 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 29/93 (31%), Positives = 44/93 (47%)

Query:    45 CHKVEKRFAPCLHYIKGKSK-HPSKDCCRGVKKISKHVKTKADKKALCKCI--QRCLRGV 101
             C +      PCL Y+    +  PS +CC G+ K++K VKT  D+  +C C+  +  +   
Sbjct:    31 CEEATNLLTPCLRYLWAPPEAKPSPECCSGLDKVNKGVKTYDDRHDMCICLSSEAAITSA 90

Query:   102 DHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
             D Y      ++PK C +     PV  K  CS I
Sbjct:    91 DQYK---FDNLPKLCNVAL-FAPVGPKFDCSTI 119

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2055828 LTP "lipid transfer protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 28/93 (30%), Positives = 43/93 (46%)

Query:    43 VECHKVEKRFAPCLHYI-KGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGV 101
             + C +V     PC  Y+  G    P   CC GV+K++  V T  D++  C+CI+   R V
Sbjct:    27 LSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNV 86

Query:   102 DHYAKSC-IPSIPKKCGINFTLPP-VDAKTKCS 132
                  +     IP++CGI       +   TKC+
Sbjct:    87 GPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:2062116 AT2G18370 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 28/85 (32%), Positives = 41/85 (48%)

Query:    43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
             + C  V +   PC+ Y+   S +P + CC GVK ++    T ADKKA C+CI+     V 
Sbjct:    26 ISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT 85

Query:   103 HYAKSCIPSIPKKCGINFTLPPVDA 127
                     ++   CG +    PVDA
Sbjct:    86 -VKPELAQALASNCGASL---PVDA 106

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:504955533 AT4G33355 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 29/96 (30%), Positives = 46/96 (47%)

Query:    43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQ---RCLR 99
             + C +V    A CL Y+K    +PS  CC G+  +      KAD++  C C++     + 
Sbjct:    29 IACPQVNMYLAQCLPYLKAGG-NPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIP 87

Query:   100 GV-DHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
             G+ D +AK     +P KCG+N  +P       C+ I
Sbjct:    88 GINDDFAKQ----LPAKCGVNIGVP-FSKTVDCNSI 118

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0035029301 hypothetical protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) (127 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	138
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	3e-18

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score = 73.5 bits (181), Expect = 3e-18
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V    APCL Y+ G    PS  CC GVK ++   KT AD++A C C++    G+ 
Sbjct: 1   ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGIS 60

Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCS 132
                    +P KCG++    P+   T CS
Sbjct: 61  GLNPGRAAGLPGKCGVSIPY-PISPSTDCS 89

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.93
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.48
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.42
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.28
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.1
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.88
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	98.86

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.93  E-value=7.6e-27  Score=160.84  Aligned_cols=89  Identities=35%  Similarity=0.817  Sum_probs=83.5

Q ss_pred             CCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCCC
Q 040194           43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTL  122 (138)
Q Consensus        43 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip~  122 (138)
                      ++|.++...|.||++|++|++..|+++||+++++|++.++|+.||+.+|+|+++...++++||.+++++||++||++++|
T Consensus         1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~   80 (89)
T cd01960           1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY   80 (89)
T ss_pred             CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence            46999999999999999988778999999999999999999999999999999887777669999999999999999999


Q ss_pred             CCCCCCcCCC
Q 040194          123 PPVDAKTKCS  132 (138)
Q Consensus       123 ~~is~~~DC~  132 (138)
                       +|+++|||+
T Consensus        81 -~i~~~~dC~   89 (89)
T cd01960          81 -PISPSTDCS   89 (89)
T ss_pred             -CCCCCCCCC
Confidence             899999996

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.48  E-value=1.1e-14  Score=97.08  Aligned_cols=67  Identities=22%  Similarity=0.567  Sum_probs=53.9

Q ss_pred             ChhhhccccCchHHhcCCC--CCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCC
Q 040194           45 CHKVEKRFAPCLHYIKGKS--KHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFT  121 (138)
Q Consensus        45 C~~v~~~L~pCl~yl~g~~--~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip  121 (138)
                      |+.....|.||++|+++++  ..|++.||++||+++        ++  |+|.+.....++.||.++|++||++|||++|
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~--------~~--C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p   69 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRAD--------LP--CLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP   69 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCC--------cC--CEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence            4554578999999999876  369999999999842        33  9998765555556999999999999999876

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.42  E-value=4.8e-14  Score=90.70  Aligned_cols=62  Identities=32%  Similarity=0.742  Sum_probs=51.8

Q ss_pred             ccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCC-CcCcccccccccCc
Q 040194           52 FAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHY-AKSCIPSIPKKCGI  118 (138)
Q Consensus        52 L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~i-n~~~a~~LP~~Cgv  118 (138)
                      |.||++|++|++..|+.+||++++++.+.     |++++|.++++......++ |.+++..||++|||
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence            67999999988678999999999998753     6778888888765554345 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.28  E-value=3.1e-13  Score=92.70  Aligned_cols=71  Identities=27%  Similarity=0.623  Sum_probs=45.5

Q ss_pred             CCCChhhhccccCc---hHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccc-cCCCCCCcCcccccccccC
Q 040194           42 RVECHKVEKRFAPC---LHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCL-RGVDHYAKSCIPSIPKKCG  117 (138)
Q Consensus        42 ~~~C~~v~~~L~pC---l~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~-~~~~~in~~~a~~LP~~Cg  117 (138)
                      ..+|.   ..|.||   +.|++++ ..|+++||+++|++.+     .|+.++|..+++.. .++ +||.+++..||++||
T Consensus        19 ~~~c~---~~l~~c~~~~~~~~~~-~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~-~in~~~a~~Lp~~Cg   88 (96)
T PF14368_consen   19 CCSCA---NSLLPCCPCLCYVTGG-PAPSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGF-GINVTRALALPAACG   88 (96)
T ss_dssp             TTB-H---CCCCHH--HHHHHCC------HHHHHHHCC---------HCCHHHCCCC-CCHCHH-CCTCHHHHHHHHHCT
T ss_pred             cchhH---HHHhccccchhccCCC-CCCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccC-CcCHHHHHHHHHHcC
Confidence            45664   346666   7888855 4899999999999853     24566666676654 444 799999999999999


Q ss_pred             cCCCC
Q 040194          118 INFTL  122 (138)
Q Consensus       118 v~ip~  122 (138)
                      ++++.
T Consensus        89 ~~~~~   93 (96)
T PF14368_consen   89 VPVPP   93 (96)
T ss_dssp             SS-S-
T ss_pred             CCCCC
Confidence            98764

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.10  E-value=4.4e-11  Score=78.85  Aligned_cols=58  Identities=28%  Similarity=0.627  Sum_probs=46.5

Q ss_pred             ccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeec--cc-ccCCCCCCcCcccccccccCcCCC
Q 040194           50 KRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQ--RC-LRGVDHYAKSCIPSIPKKCGINFT  121 (138)
Q Consensus        50 ~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~--~~-~~~~~~in~~~a~~LP~~Cgv~ip  121 (138)
                      +.|.+|++|++++. .||++||+.+|+           +..|+|..  +. ..+|  ||.++|++||++|||++|
T Consensus         4 ~~L~~C~~ai~~~~-~Ps~~CC~~Lk~-----------~~~CLC~y~~~p~l~~~--i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILGGS-PPSAACCAKLKE-----------QQSCLCQYAKNPSLKQY--VNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhCCC-CCCHHHHHHHhc-----------CCCCeeeeecCccHHhh--cCcHHHHHHHHHcCCCCC
Confidence            57999999999764 899999999998           12577754  32 2333  999999999999999976

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.88  E-value=2.4e-11  Score=82.81  Aligned_cols=65  Identities=25%  Similarity=0.700  Sum_probs=52.0

Q ss_pred             ccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCC----------CCCCcCcccccccccCcC
Q 040194           50 KRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGV----------DHYAKSCIPSIPKKCGIN  119 (138)
Q Consensus        50 ~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~----------~~in~~~a~~LP~~Cgv~  119 (138)
                      ..+.+|..|++++...|+.+||++|++|..        ++.|..++..+.+.          .+++..+|.+||+.|||.
T Consensus        13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l~~--------~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~   84 (90)
T PF00234_consen   13 VRLSPCLPYLQGGCQQPSQQCCQQLRQLDP--------QCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVS   84 (90)
T ss_dssp             SHHHGGHHHHTTSSSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSS
T ss_pred             ccccccHHHHhcccccchHHHhHHHHHHhH--------HhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCC
Confidence            458999999998766899999999999853        45566666554431          258999999999999999


Q ss_pred             CCC
Q 040194          120 FTL  122 (138)
Q Consensus       120 ip~  122 (138)
                      ++|
T Consensus        85 ~~~   87 (90)
T PF00234_consen   85 PPY   87 (90)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            876

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=98.86  E-value=1.2e-09  Score=70.94  Aligned_cols=69  Identities=29%  Similarity=0.728  Sum_probs=52.8

Q ss_pred             ChhhhccccCchHHhcCC--CCCchHHhHHHHHhhhhhhccccCccccceeeccc--ccCCCC---CCcCcccccccccC
Q 040194           45 CHKVEKRFAPCLHYIKGK--SKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRC--LRGVDH---YAKSCIPSIPKKCG  117 (138)
Q Consensus        45 C~~v~~~L~pCl~yl~g~--~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~--~~~~~~---in~~~a~~LP~~Cg  117 (138)
                      |..+...+.+|++|+++.  ...|+.+||++++.+.         ...|+|....  ......   ++..++.+||+.||
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~   71 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG   71 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence            666777888999999986  4578999999999984         2368887432  222211   59999999999999


Q ss_pred             cCCCC
Q 040194          118 INFTL  122 (138)
Q Consensus       118 v~ip~  122 (138)
                      +.+++
T Consensus        72 ~~~~~   76 (79)
T smart00499       72 VPPPY   76 (79)
T ss_pred             CCCCC
Confidence            98764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	138
1fk0_A	93	Structural Basis Of Non-Specific Lipid Binding In M		8e-14
1uva_A	91	Lipid Binding In Rice Nonspecific Lipid Transfer Pr		7e-11
1be2_A	91	Lipid Transfer Protein Complexed With Palmitate, Nm		1e-10
1mid_A	91	Non-Specific Lipid Transfer Protein 1 From Barley I		1e-10
1bwo_A	90	The Crystal Structure Of Wheat Non-Specific Transfe		1e-10
1cz2_A	90	Solution Structure Of Wheat Ns-Ltp Complexed With P		3e-10
2ljo_A	93	3d Solution Structure Of Lipid Transfer Protein Lc-		9e-09
2alg_A	92	Crystal Structure Of Peach Pru P3, The Prototypic M		1e-08
1siy_A	91	Nmr Structure Of Mung Bean Non-Specific Lipid Trans		3e-07
1t12_A	91	Solution Structure Of A New Ltp1 Length = 91		4e-07

>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize Lipid-Transfer Protein Complexes With Capric Acid Revealed By High-Resolution X-Ray Crystallography Length = 93

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V    APC+ Y +G+   PS  CC GV+ ++   +T AD++A C C++    GV 
Sbjct: 2   ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS 61
Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKIT 135
                   SIP KCG++     +   T CS++ 
Sbjct: 62  GLNAGNAASIPSKCGVSIPY-TISTSTDCSRVN 93

>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1 Complexes From Oryza Sativa Length = 91

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V     PCL Y +G +  PS  CC GV+ +     T AD++  C C++   RG+ 
Sbjct: 1   ITCGQVNSAVGPCLTYARGGA-GPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK 59
Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKIT 135
                   SIP KCG++     + A   CS+++
Sbjct: 60  GLNAGNAASIPSKCGVSVPY-TISASIDCSRVS 91

>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10 Structures Length = 91

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V+ +  PCL Y++G    PS +CC GV+ +    ++  D++ +C C++   RG+ 
Sbjct: 1   LNCGQVDSKMKPCLTYVQG-GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 103 HYAKSCIPSIPKKCGIN--FTLPPVDAKTKCSKI 134
           +   +   SIP KC +N  +T+ P      CS+I
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISP---DIDCSRI 90

>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl Length = 91

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V+ +  PCL Y++G    PS +CC GV+ +    ++  D++ +C C++   RG+ 
Sbjct: 1   LNCGQVDSKMKPCLTYVQG-GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 103 HYAKSCIPSIPKKCGIN--FTLPPVDAKTKCSKI 134
           +   +   SIP KC +N  +T+ P      CS+I
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISP---DIDCSRI 90

>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer Protein Complexed With Two Molecules Of Phospholipid At 2.1 A Resolution Length = 90

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           ++C  V+    PCL Y++G    PS  CC GVK +    ++++D+++ C C++   RG+ 
Sbjct: 1   IDCGHVDSLVRPCLSYVQG-GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59
Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
           +  +    SIP KCG+N     +     CS++
Sbjct: 60  NLNEDNARSIPPKCGVNLPY-TISLNIDCSRV 90

>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With Prostaglandin B2 Length = 90

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 44  ECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDH 103
           +C  V+    PCL Y++G    PS  CC GVK +    ++++D+++ C C++   RG+ +
Sbjct: 2   DCGHVDSLVRPCLSYVQG-GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 104 YAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
             +    SIP KCG+N     +     CS++
Sbjct: 61  LNEDNARSIPPKCGVNLPY-TISLNIDCSRV 90

>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2 Length = 93

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C  V    +PCL Y+ G    PS  CC GVKK+     T  D++A C C++     + 
Sbjct: 2   ISCGAVTSDLSPCLTYLTG-GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSIT 60
Query: 103 HYAKSCIPSIPKKCGINF 120
               +   ++P KCG+N 
Sbjct: 61  KLNTNNAAALPGKCGVNI 78

>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member Of The Family Of Plant Non-Specific Lipid Transfer Protein Pan-Allergens Length = 92

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V    APC+ Y++G    P   CC G++ ++   +T  D++A C C+++    V 
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 60
Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
               +   ++P KCG++     + A T C+ +
Sbjct: 61  GVNPNNAAALPGKCGVSIPY-KISASTNCATV 91

>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer Protein 1 Length = 91

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 43  VECHKVEKRFAPCLHYI-KGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGV 101
           + C +V+   A C+ ++ KG    PS  CC GVK I    +T AD++A+C C++     V
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGGVVPPS--CCTGVKNILNSSRTTADRRAVCSCLKAAAGAV 58
Query: 102 DHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKIT 135
                +   ++P KCG+N     +   T C+ I 
Sbjct: 59  RGINPNNAEALPGKCGVNIPY-KISTSTNCNSIN 91

>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1 Length = 91

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V    APCL Y++  +  P   CC GVK +    +T  D++  C C++     + 
Sbjct: 2   ITCGQVTSNLAPCLAYLR--NTGPLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS 59
Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
                    +P  CG+N     +   T CSK+
Sbjct: 60  GINLGKAAGLPSTCGVNIPY-KISPSTDCSKV 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	1e-17
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	1e-15
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	1e-15
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	2e-15
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	4e-14

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 71.8 bits (176), Expect = 1e-17
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V    APC+ Y +G+   PS  CC GV+ ++   +T AD++A C C++    GV 
Sbjct: 2   ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS 61

Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
                   SIP KCG++     +   T CS++
Sbjct: 62  GLNAGNAASIPSKCGVSIPY-TISTSTDCSRV 92

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score = 66.4 bits (162), Expect = 1e-15
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V    APCL Y++     P   CC GVK +    +T  D++  C C++     + 
Sbjct: 2   ITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS 59

Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
                    +P  CG+N     +   T CSK+
Sbjct: 60  GINLGKAAGLPSTCGVNIPY-KISPSTDCSKV 90

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score = 66.4 bits (162), Expect = 1e-15
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           ++C  V+    PCL Y++G    PS  CC GVK +    ++++D+++ C C++   RG+ 
Sbjct: 1   IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59

Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
           +  +    SIP KCG+N     +     CS++
Sbjct: 60  NLNEDNARSIPPKCGVNLPY-TISLNIDCSRV 90

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score = 66.0 bits (161), Expect = 2e-15
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V    APC+ Y++G    P   CC G++ ++   +T  D++A C C+++    V 
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 60

Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
               +   ++P KCG++     + A T C+ +
Sbjct: 61  GVNPNNAAALPGKCGVSIPY-KISASTNCATV 91

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score = 62.6 bits (152), Expect = 4e-14
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V+   A C+ +++     P   CC GVK I    +T AD++A+C C++     V 
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGGVVPP-SCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59

Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
               +   ++P KCG+N     +   T C+ I
Sbjct: 60  GINPNNAEALPGKCGVNIPY-KISTSTNCNSI 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.97
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.96
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.96
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.96
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.95
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.95
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.59
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.43
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.4

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.97  E-value=2.2e-32  Score=190.30  Aligned_cols=93  Identities=29%  Similarity=0.757  Sum_probs=87.5

Q ss_pred             CCCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCC
Q 040194           42 RVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFT  121 (138)
Q Consensus        42 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip  121 (138)
                      +++|++|...|+||++|++|+. .|++.||+|+++|++.++|+.|||++|+|+++.+..+++||.++|.+||++|||++|
T Consensus         1 AisC~~v~~~L~pCl~Yv~g~~-~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p   79 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTGGP-GPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIP   79 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTSS-CCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCS
T ss_pred             CCCHHHHHHHHHhHHHHHcCCC-CCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCC
Confidence            4789999999999999999875 699999999999999999999999999999988777778999999999999999999


Q ss_pred             CCCCCCCcCCCCccc
Q 040194          122 LPPVDAKTKCSKITM  136 (138)
Q Consensus       122 ~~~is~~~DC~~i~~  136 (138)
                      | +|++++||++|++
T Consensus        80 ~-~Is~~~dC~~v~~   93 (93)
T 2ljo_A           80 Y-KISTTTNCNTVKF   93 (93)
T ss_dssp             S-CCSTTCCGGGCCC
T ss_pred             C-CCCCCCCCCCCCC
Confidence            9 9999999999974

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.96  E-value=2.9e-31  Score=184.18  Aligned_cols=93  Identities=32%  Similarity=0.818  Sum_probs=87.3

Q ss_pred             CCCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCC
Q 040194           42 RVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFT  121 (138)
Q Consensus        42 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip  121 (138)
                      +++|+++...|.||++|++|++..|+++||+|||+|+++|+|+.|||..|+|++....++++||.++|++||++|||++|
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~~p   80 (93)
T 1afh_A            1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCCCC
Confidence            36899999999999999998877899999999999999999999999999999877777778999999999999999999


Q ss_pred             CCCCCCCcCCCCcc
Q 040194          122 LPPVDAKTKCSKIT  135 (138)
Q Consensus       122 ~~~is~~~DC~~i~  135 (138)
                      | +|+++|||++|+
T Consensus        81 ~-~is~~~dC~~v~   93 (93)
T 1afh_A           81 Y-TISTSTDCSRVN   93 (93)
T ss_dssp             S-CCSTTCCSSSCC
T ss_pred             C-CCCCCCCCccCC
Confidence            9 999999999985

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.96  E-value=5.4e-31  Score=182.33  Aligned_cols=91  Identities=26%  Similarity=0.700  Sum_probs=85.1

Q ss_pred             CCCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCC
Q 040194           42 RVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFT  121 (138)
Q Consensus        42 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip  121 (138)
                      +++|+++...|.||++|++|++. |+ +||+|||+|++.|+|+.|||..|+|+++.+.++++||.++|++||++|||++|
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p   78 (91)
T 1t12_A            1 AITCGQVTSNLAPCLAYLRNTGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIP   78 (91)
T ss_dssp             CCCHHHHHHHTHHHHHHHTTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCCCC
Confidence            36899999999999999999876 88 99999999999999999999999999877677768999999999999999999


Q ss_pred             CCCCCCCcCCCCcc
Q 040194          122 LPPVDAKTKCSKIT  135 (138)
Q Consensus       122 ~~~is~~~DC~~i~  135 (138)
                      | +|+++|||++|+
T Consensus        79 ~-~is~~~dC~~v~   91 (91)
T 1t12_A           79 Y-KISPSTDCSKVQ   91 (91)
T ss_dssp             S-CSSSSSCCTTCC
T ss_pred             C-CCCCCCCCccCC
Confidence            9 999999999985

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.96  E-value=7.6e-31  Score=181.19  Aligned_cols=90  Identities=31%  Similarity=0.857  Sum_probs=84.9

Q ss_pred             CCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCCC
Q 040194           43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTL  122 (138)
Q Consensus        43 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip~  122 (138)
                      ++|+++...|.||++|++|++. |+++||++||+|+++|+|+.|||..|+|+++.+.++++||.++|++||++|||++||
T Consensus         1 i~C~~v~~~L~pCl~y~~~~~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~   79 (90)
T 1bwo_A            1 IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPY   79 (90)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSC-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCCCSS
T ss_pred             CCHHHHHHhhcccHHHHcCCCC-CCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCCCCC
Confidence            4799999999999999998875 999999999999999999999999999998877777789999999999999999999


Q ss_pred             CCCCCCcCCCCc
Q 040194          123 PPVDAKTKCSKI  134 (138)
Q Consensus       123 ~~is~~~DC~~i  134 (138)
                       +|+++|||++|
T Consensus        80 -~is~~~dC~~v   90 (90)
T 1bwo_A           80 -TISLNIDCSRV   90 (90)
T ss_dssp             -CCCTTCCGGGC
T ss_pred             -CCCCCCCCCCC
Confidence             99999999987

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.95  E-value=1.5e-30  Score=179.90  Aligned_cols=91  Identities=27%  Similarity=0.683  Sum_probs=85.5

Q ss_pred             CCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCCC
Q 040194           43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTL  122 (138)
Q Consensus        43 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip~  122 (138)
                      ++|+++...|.||++|+++++. |+++||++||+|++.|+|+.|||..|+|+++.+.++++||.++|++||++|||++||
T Consensus         1 i~C~~v~~~L~pCl~yv~~~~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~~p~   79 (91)
T 1siy_A            1 MTCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPY   79 (91)
T ss_dssp             CCTTTTHHHHHHHHHHHTSCSC-CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCCCSS
T ss_pred             CCHHHHHHhccCcHHHHhCCCC-CcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCCCCC
Confidence            4799999999999999998875 999999999999999999999999999998877777679999999999999999999


Q ss_pred             CCCCCCcCCCCcc
Q 040194          123 PPVDAKTKCSKIT  135 (138)
Q Consensus       123 ~~is~~~DC~~i~  135 (138)
                       +|+++|||++|+
T Consensus        80 -~is~~~dC~~v~   91 (91)
T 1siy_A           80 -KISTSTNCNSIN   91 (91)
T ss_dssp             -CSCTTSCSSTTC
T ss_pred             -CCCCCCCCccCC
Confidence             999999999985

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.95  E-value=3.2e-30  Score=178.61  Aligned_cols=92  Identities=25%  Similarity=0.719  Sum_probs=85.3

Q ss_pred             CCCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCC
Q 040194           42 RVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFT  121 (138)
Q Consensus        42 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip  121 (138)
                      +++|+++...|.||++|++|++ .|+++||++||+|+++|+|++|||..|+|++....++++||.++|++||++|||++|
T Consensus         1 ~~~C~~v~~~L~pCl~y~~~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~p   79 (92)
T 2alg_A            1 MITCGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSIP   79 (92)
T ss_dssp             CCCHHHHHHHHGGGHHHHHHCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCCC
Confidence            3689999999999999999876 588899999999999999999999999999877667767999999999999999999


Q ss_pred             CCCCCCCcCCCCcc
Q 040194          122 LPPVDAKTKCSKIT  135 (138)
Q Consensus       122 ~~~is~~~DC~~i~  135 (138)
                      | +|+++|||++|+
T Consensus        80 ~-~is~~~dC~~v~   92 (92)
T 2alg_A           80 Y-KISASTNCATVK   92 (92)
T ss_dssp             S-CSSTTSCGGGCC
T ss_pred             C-CCCCCCCCccCC
Confidence            9 999999999985

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.59  E-value=5.5e-17  Score=108.36  Aligned_cols=70  Identities=21%  Similarity=0.475  Sum_probs=59.5

Q ss_pred             CCCChhhhccccCchHHhcCC-CCCchHHhHHHHHhhhhhhccccCccccceeeccc---ccCCCCCCcCcccccccccC
Q 040194           42 RVECHKVEKRFAPCLHYIKGK-SKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRC---LRGVDHYAKSCIPSIPKKCG  117 (138)
Q Consensus        42 ~~~C~~v~~~L~pCl~yl~g~-~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~---~~~~~~in~~~a~~LP~~Cg  117 (138)
                      ..+|+++...|.||++|++++ ...|+++||++||+        .|+  .|+|.+..   +.++ +||.++|++||++||
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~--------~~~--~ClC~~~~~~~~~~~-gin~~~A~~LP~~Cg   70 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQH--------ADF--ACLCGYKNSPWLGSF-GVDPELASALPKQCG   70 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTT--------CCH--HHHHTTTTCHHHHHH-TBCHHHHHHHHHHTT
T ss_pred             cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHh--------cCc--CCcCcccCCcchhhc-CcCHHHHHHHHHHcC
Confidence            578999999999999999974 45899999999998        133  68888644   4556 799999999999999


Q ss_pred             cCCCC
Q 040194          118 INFTL  122 (138)
Q Consensus       118 v~ip~  122 (138)
                      |++||
T Consensus        71 v~~p~   75 (77)
T 2rkn_A           71 LANAP   75 (77)
T ss_dssp             CSCCC
T ss_pred             CCCCC
Confidence            99987

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.43  E-value=1.7e-14  Score=94.69  Aligned_cols=63  Identities=21%  Similarity=0.496  Sum_probs=50.1

Q ss_pred             CChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCcccccee--ecccccCCCCCCcCcccccccccCcCCC
Q 040194           44 ECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKC--IQRCLRGVDHYAKSCIPSIPKKCGINFT  121 (138)
Q Consensus        44 ~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~C--l~~~~~~~~~in~~~a~~LP~~Cgv~ip  121 (138)
                      +|..  +.|.||++|++++. .||++||++||+.           ..|+|  +++.... .+||.++|++||++|||++|
T Consensus         2 ~C~~--~~L~pC~~~v~~~~-~Ps~~CC~~lk~~-----------~~ClC~~~k~~~~~-~~in~~~A~~Lp~~Cgv~~P   66 (69)
T 1l6h_A            2 GCNA--GQLTVCTGAIAGGA-RPTAACCSSLRAQ-----------QGCFCQFAKDPRYG-RYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTT--TTHHHHHHHHTTCC-STTHHHHHHHHHH-----------HHHHHHHTTCSSHH-HHTTTTTGGGCCCCCSSCSC
T ss_pred             CCCh--hhcccCHHHHcCCC-CCCHHHHHhhCCC-----------CCCCCccccCcccc-cccCHHHHHHHHHHcCCCCC
Confidence            3554  57999999999875 7999999999972           46888  5554322 25999999999999999875

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.40  E-value=1.1e-14  Score=95.02  Aligned_cols=59  Identities=20%  Similarity=0.474  Sum_probs=48.3

Q ss_pred             ccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCcccccee--ecccccCCCCCCcCcccccccccCcCCC
Q 040194           50 KRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKC--IQRCLRGVDHYAKSCIPSIPKKCGINFT  121 (138)
Q Consensus        50 ~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~C--l~~~~~~~~~in~~~a~~LP~~Cgv~ip  121 (138)
                      +.|.||++|+++++ .||++||++||+           +..|+|  +++.... .+||.++|++||++|||++|
T Consensus         5 ~~L~pC~~~v~~~~-~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~-~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAILSGA-KPSGECCGNLRA-----------QQGCFCQYAKDPTYG-QYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHTTCC-CCCHHHHHHHHH-----------HSSHHHHGGGCSTTH-HHHTCHHHHHHHHHHTSCCS
T ss_pred             hhcccCHHHHcCCC-CCCHHHHHhhCC-----------CCCCCCccccCcccc-cccCHHHHHHHHHHcCCCCC
Confidence            57999999999875 799999999997           247888  5554322 25999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	138
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	3e-15
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	3e-13

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 64.5 bits (157), Expect = 3e-15
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 43  VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
           + C +V    APC+ Y +G+   PS  CC GV+ ++   +T AD++A C C++    GV 
Sbjct: 2   ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS 61

Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
                   SIP KCG++     +   T CS++
Sbjct: 62  GLNAGNAASIPSKCGVSIPY-TISTSTDCSRV 92

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 59.1 bits (143), Expect = 3e-13
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 45  CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHY 104
           C +V+ +  PCL Y++G    PS +CC GV+ +    ++  D++ +C C++   RG+ + 
Sbjct: 3   CGQVDSKMKPCLTYVQGGPG-PSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNL 61

Query: 105 AKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
             +   SIP KC +N     +     CS+I
Sbjct: 62  NLNNAASIPSKCNVNVPY-TISPDIDCSRI 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.96
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.96
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	98.7
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	98.63

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.96  E-value=9.2e-32  Score=185.21  Aligned_cols=93  Identities=32%  Similarity=0.818  Sum_probs=87.5

Q ss_pred             CCCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCC
Q 040194           42 RVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFT  121 (138)
Q Consensus        42 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip  121 (138)
                      +++|+++...|.||++|++|++..|++.||+|+++|++.++|+.|||++|+|+++.+..+.+||.+|+.+||++||+++|
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~l~   80 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCCCC
Confidence            47899999999999999999877899999999999999999999999999999987766657999999999999999999


Q ss_pred             CCCCCCCcCCCCcc
Q 040194          122 LPPVDAKTKCSKIT  135 (138)
Q Consensus       122 ~~~is~~~DC~~i~  135 (138)
                      | ||+++|||++|+
T Consensus        81 ~-pis~~~dCs~i~   93 (93)
T d1fk5a_          81 Y-TISTSTDCSRVN   93 (93)
T ss_dssp             S-CCSTTCCGGGCC
T ss_pred             C-CCCCCCCCCcCC
Confidence            9 999999999995

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.96  E-value=3.5e-31  Score=181.72  Aligned_cols=91  Identities=30%  Similarity=0.833  Sum_probs=85.5

Q ss_pred             CCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCCC
Q 040194           43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTL  122 (138)
Q Consensus        43 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip~  122 (138)
                      ++|+++...|+||++|++|+. +|++.||+|+++|++.++|+.|||++|+|+++.+..+++||.+|+.+||++|||++||
T Consensus         1 i~C~~v~~~l~pCl~Yl~g~~-~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~p~   79 (91)
T d1mida_           1 LNCGQVDSKMKPCLTYVQGGP-GPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPY   79 (91)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCCS
T ss_pred             CCHHHHHHHHHhhHHHHcCCC-CCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCCCC
Confidence            579999999999999999875 7999999999999999999999999999999877666689999999999999999999


Q ss_pred             CCCCCCcCCCCcc
Q 040194          123 PPVDAKTKCSKIT  135 (138)
Q Consensus       123 ~~is~~~DC~~i~  135 (138)
                       ||+++|||++|+
T Consensus        80 -pis~~~dC~~i~   91 (91)
T d1mida_          80 -TISPDIDCSRIY   91 (91)
T ss_dssp             -CCCTTCCGGGCC
T ss_pred             -CCCCCCCCCCCC
Confidence             999999999996

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.70  E-value=1.1e-09  Score=70.27  Aligned_cols=63  Identities=19%  Similarity=0.484  Sum_probs=50.1

Q ss_pred             CChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceee--ccc-ccCCCCCCcCcccccccccCcCC
Q 040194           44 ECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCI--QRC-LRGVDHYAKSCIPSIPKKCGINF  120 (138)
Q Consensus        44 ~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl--~~~-~~~~~~in~~~a~~LP~~Cgv~i  120 (138)
                      .|+.  ..|.||++.++++. .||.+||+.+|+           |..|+|.  ++. .++|  ||..+++.+-..|||++
T Consensus         2 ~C~p--~~L~~C~~ai~~g~-~PS~~CC~kLke-----------Q~~ClC~Y~k~P~~~~y--v~spnarkv~~aCgvp~   65 (69)
T d1l6ha_           2 GCNA--GQLTVCTGAIAGGA-RPTAACCSSLRA-----------QQGCFCQFAKDPRYGRY--VNSPNARKAVSSCGIAL   65 (69)
T ss_dssp             CSTT--TTHHHHHHHHTTCC-STTHHHHHHHHH-----------HHHHHHHHTTCSSHHHH--TTTTTGGGCCCCCSSCS
T ss_pred             CCCh--hhccccHHHHhCCC-CCcHHHHHHHHh-----------cCCccceeccCccHHHH--cCCHHHHHHHHhcCCCC
Confidence            4665  46999999999886 699999999998           3456664  554 2334  99999999999999988


Q ss_pred             CC
Q 040194          121 TL  122 (138)
Q Consensus       121 p~  122 (138)
                      |-
T Consensus        66 P~   67 (69)
T d1l6ha_          66 PT   67 (69)
T ss_dssp             CC
T ss_pred             CC
Confidence            73

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=98.63  E-value=1e-09  Score=69.97  Aligned_cols=62  Identities=19%  Similarity=0.473  Sum_probs=49.5

Q ss_pred             ChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceee--ccc-ccCCCCCCcCcccccccccCcCCC
Q 040194           45 CHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCI--QRC-LRGVDHYAKSCIPSIPKKCGINFT  121 (138)
Q Consensus        45 C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl--~~~-~~~~~~in~~~a~~LP~~Cgv~ip  121 (138)
                      |+.  ..|.||++.++++. .||.+||+.+|+           |..|+|.  ++. .++|  ||..+|+.+-+.|||++|
T Consensus         2 C~p--~~L~~C~~Ai~~g~-~PS~~CC~kLke-----------Q~~ClC~Y~kdP~~~~y--v~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           2 CQA--SQLAVCASAILSGA-KPSGECCGNLRA-----------QQGCFCQYAKDPTYGQY--IRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCG--GGGGGGHHHHHHCC-CCCHHHHHHHHH-----------HGGGHHHHTTCTTTHHH--HTSHHHHHHHHHTTCCCC
T ss_pred             CCh--hhccccHHHHhcCC-CCcHHHHHHHHh-----------cCCccceecCCccHHHH--cCCHHHHHHHHhcCCCCC
Confidence            554  46999999999876 799999999998           4456665  554 3344  999999999999999887


Q ss_pred             C
Q 040194          122 L  122 (138)
Q Consensus       122 ~  122 (138)
                      -
T Consensus        66 ~   66 (67)
T d1tuka1          66 H   66 (67)
T ss_dssp             C
T ss_pred             C
Confidence            3