Citrus Sinensis ID: 040195

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--
Protein Sequence
TRRTGIPHQHDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSIC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEcccccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccEEEEccccccccccccccEEccccEEEEcccHHcccccccccEEccccEEEEcccHHHHcccccccccccccccccccccEEcccHHHHcccccccEEEccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccHHHHHcccccccEEccccEEEEcccccccccccccEEEccccEEEEccccccccccccccEEcccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccccccccccccccccccccccEEcccccccEEEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccccccccHHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccccHcHcccccccccccccHHHcccccccEEEEcccccccccccHHHcccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHcccccEEEcccccccccccHHHccc
Coil and Loop (DISEMBL)
trrtgiphqhdpsgvtssWNNTINLCQWmgvtcghrhqrvteldlsnqriggvlspyvgNLSFLRYINlsdngfhgeipqeiGNLYRLeklelsnnsfsgtiptnlsrcselTHLRVANnklegqipKEIGSLLKLQTLALYYNNltgqlpdfvGNLSALQVIYIRGnslggkipttLGLLRNLVYLNVNENQFWYVssfsgslpfdilvnlpnlkklciaennfvgsipdslsnasNLELLELAGNQFEGKVSIDFSSLKNLAVLNLErnnlgigtandLGFVTFLTncsslklphsiANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGmqsnqlhgtIPDVIGELKNLQILSLFGnflhgsipsslgnltKLANlelssnslqgniplsvgncqnligfdashitltgalpqQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDisgnqfsgvipvtlsic
Flexible Loop (DISEMBL)
trrtgiphqhdpsgvtSSWNNTINLCQWMGVTCGHRHQRVTeldlsnqriGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDisgnqfsgvipvtlsic
Low Complexity Region (SEG)
TRRTGIPHQHDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDslsnasnlellelaGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTlslyldlshnllngslllqvgnlKNLILLDISGNQFSGVIPVTLSIC
Disordered region (IsUnstruct)
*****************SWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS**
Disordered Region (DISOPRED)
******PH*HDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSIC
Disordered Region (DISEMBL)
***************TSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSIC
Disordered Region (DISPRO)
TRRTGIPHQHDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVT*S*C
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TRRTGIPHQHDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSIC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	472	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.976	0.456	0.413	5e-86
Q9SD62	1025	Putative receptor-like pr	no	no	0.968	0.445	0.432	1e-85
C0LGT6	1031	LRR receptor-like serine/	no	no	0.966	0.442	0.381	1e-84
Q9FL28	1173	LRR receptor-like serine/	no	no	0.904	0.364	0.340	6e-59
O49318	1124	Probable leucine-rich rep	no	no	0.927	0.389	0.345	3e-57
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.930	0.398	0.334	9e-57
P93194	1109	Receptor-like protein kin	N/A	no	0.947	0.403	0.319	1e-54
Q9LHP4	1141	Receptor-like protein kin	no	no	0.868	0.359	0.341	2e-54
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.896	0.337	0.339	3e-54
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.949	0.406	0.336	2e-53

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  318 bits (815), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 204/493 (41%), Positives = 286/493 (58%), Gaps = 32/493 (6%)

Query: 10  HDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINL 69
            D   V SSWN++  LC W GVTCG +++RVT L+L   ++GGV+SP +GNLSFL  ++L
Sbjct: 38  EDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFLVSLDL 97

Query: 70  SDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKE 129
            +N F G IPQE+G L RLE L++  N   G IP  L  CS L +LR+ +N+L G +P E
Sbjct: 98  YENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSE 157

Query: 130 IGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV 189
           +GSL  L  L LY NN+ G+LP  +GNL+ L+ + +  N+L G+IP+ +  L  +  L +
Sbjct: 158 LGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQL 217

Query: 190 NENQF--------WYVSS----------FSGSLPFDILVNLPNLKKLCIAENNFVGSIPD 231
             N F        + +SS          FSG L  D+ + LPNL    +  N F GSIP 
Sbjct: 218 VANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPT 277

Query: 232 SLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS 291
           +LSN S LE L +  N   G +   F ++ NL +L L  N+LG  ++ DL F+T LTNC+
Sbjct: 278 TLSNISTLERLGMNENNLTGSIPT-FGNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCT 336

Query: 292 SLK------------LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQ 339
            L+            LP SIANLS+ +    +GG  I G I + I NL+NL  L +  N 
Sbjct: 337 QLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNM 396

Query: 340 LHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC 399
           L G +P  +G+L NL+ LSLF N L G IP+ +GN+T L  L+LS+N  +G +P S+GNC
Sbjct: 397 LSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNC 456

Query: 400 QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN 459
            +L+        L G +P +++ I  L L LD+S N L GSL   +G L+NL  L +  N
Sbjct: 457 SHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMSGNSLIGSLPQDIGALQNLGTLSLGDN 515

Query: 460 QFSGVIPVTLSIC 472
           + SG +P TL  C
Sbjct: 516 KLSGKLPQTLGNC 528

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  317 bits (812), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 211/488 (43%), Positives = 301/488 (61%), Gaps = 31/488 (6%)

Query: 15  VTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGF 74
           V  SWN+++ LC W GV CG +H+RVT +DL   ++ GV+SP+VGNLSFLR +NL+DN F
Sbjct: 58  VLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFF 117

Query: 75  HGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLL 134
           HG IP E+GNL+RL+ L +SNN F G IP  LS CS L+ L +++N LE  +P E GSL 
Sbjct: 118 HGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLS 177

Query: 135 KLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF 194
           KL  L+L  NNLTG+ P  +GNL++LQ++    N + G+IP  +  L+ +++  +  N+F
Sbjct: 178 KLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKF 237

Query: 195 WYV------------------SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNA 236
             V                  +SFSG+L  D    LPNL+ L +  N+F G+IP++LSN 
Sbjct: 238 NGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNI 297

Query: 237 SNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL--- 293
           S+L  L++  N   GK+ + F  L+NL +L L  N+LG  ++ DL F+  LTNCS L   
Sbjct: 298 SSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLGALTNCSQLQYL 357

Query: 294 ---------KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTI 344
                    +LP  IANLS+ +T   +GGN I G I  GI NLV+L  L +  N L G +
Sbjct: 358 NVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKL 417

Query: 345 PDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIG 404
           P  +GEL  L+ + L+ N L G IPSSLGN++ L  L L +NS +G+IP S+G+C  L+ 
Sbjct: 418 PPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIPSSLGSCSYLLD 477

Query: 405 FDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV 464
            +     L G++P +L+ + +L + L++S NLL G L   +G LK L+ LD+S N+ SG 
Sbjct: 478 LNLGTNKLNGSIPHELMELPSL-VVLNVSFNLLVGPLRQDIGKLKFLLALDVSYNKLSGQ 536

Query: 465 IPVTLSIC 472
           IP TL+ C
Sbjct: 537 IPQTLANC 544

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  313 bits (803), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 191/501 (38%), Positives = 288/501 (57%), Gaps = 45/501 (8%)

Query: 9   QHDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYIN 68
           +++   V +SWN++   C W+GVTCG R +RV  L+L   ++ GV+SP +GNLSFLR +N
Sbjct: 44  ENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLN 103

Query: 69  LSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPK 128
           L+DN F   IPQ++G L+RL+ L +S N   G IP++LS CS L+ + +++N L   +P 
Sbjct: 104 LADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPS 163

Query: 129 EIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLN 188
           E+GSL KL  L L  NNLTG  P  +GNL++LQ +    N + G+IP  +  L  +V+  
Sbjct: 164 ELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQ 223

Query: 189 VNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENN------------------------ 224
           +  N      SFSG  P   L N+ +L+ L +A+N+                        
Sbjct: 224 IALN------SFSGGFP-PALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTN 276

Query: 225 -FVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGF 283
            F G+IP +L+N S+LE  +++ N   G + + F  L+NL  L +  N+LG  +++ L F
Sbjct: 277 QFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEF 336

Query: 284 VTFLTNCSSL------------KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLI 331
           +  + NC+ L            +LP SIANLS+T+T  ++G N I G I   I NLV+L 
Sbjct: 337 IGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQ 396

Query: 332 ALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGN 391
            L +++N L G +P   G+L NLQ++ L+ N + G IPS  GN+T+L  L L+SNS  G 
Sbjct: 397 ELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGR 456

Query: 392 IPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNL 451
           IP S+G C+ L+        L G +PQ++L I +L+ Y+DLS+N L G    +VG L+ L
Sbjct: 457 IPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLA-YIDLSNNFLTGHFPEEVGKLELL 515

Query: 452 ILLDISGNQFSGVIPVTLSIC 472
           + L  S N+ SG +P  +  C
Sbjct: 516 VGLGASYNKLSGKMPQAIGGC 536

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  228 bits (582), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 165/484 (34%), Positives = 247/484 (51%), Gaps = 57/484 (11%)

Query: 10  HDPSGVTSSWN--NTINLCQWMGVTC---GHRHQRVTELDLSNQRIGGVLSPYVGNLSFL 64
           +DP GV S W    ++  C W G+TC   GH    V  + L  +++ GVLSP + NL++L
Sbjct: 43  NDPLGVLSDWTIIGSLRHCNWTGITCDSTGH----VVSVSLLEKQLEGVLSPAIANLTYL 98

Query: 65  RYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEG 124
           + ++L+ N F G+IP EIG L  L +L L  N FSG+IP+ +     + +L + NN L G
Sbjct: 99  QVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSG 158

Query: 125 QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL 184
            +P+EI     L  +   YNNLTG++P+ +G+L  LQ+    GN L G IP ++G L NL
Sbjct: 159 DVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANL 218

Query: 185 VYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLEL 244
             L+++ NQ       +G +P D   NL NL+ L + EN   G IP  + N S+L  LEL
Sbjct: 219 TDLDLSGNQ------LTGKIPRD-FGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLEL 271

Query: 245 AGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSS 304
             NQ  GK+  +  +L  L  L + +N L                  +  +P S+  L+ 
Sbjct: 272 YDNQLTGKIPAELGNLVQLQALRIYKNKL------------------TSSIPSSLFRLTQ 313

Query: 305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFL 364
            +TH  +  N ++G I   I  L +L  L + SN   G  P  I  L+NL +L++  N +
Sbjct: 314 -LTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNI 372

Query: 365 HGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQL--LS 422
            G +P+ LG LT L NL    N L G IP S+ NC  L   D SH  +TG +P+    ++
Sbjct: 373 SGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMN 432

Query: 423 ITTLSL--------------------YLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS 462
           +T +S+                     L ++ N L G+L   +G L+ L +L +S N  +
Sbjct: 433 LTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLT 492

Query: 463 GVIP 466
           G IP
Sbjct: 493 GPIP 496

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  223 bits (567), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 159/460 (34%), Positives = 237/460 (51%), Gaps = 22/460 (4%)

Query: 26  CQWMGVTCGHRHQR-------VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEI 78
           C W+GV C  +          VT LDLS+  + G++SP +G L  L Y+NL+ N   G+I
Sbjct: 66  CNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDI 125

Query: 79  PQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQT 138
           P+EIGN  +LE + L+NN F G+IP  +++ S+L    + NNKL G +P+EIG L  L+ 
Sbjct: 126 PREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEE 185

Query: 139 LALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVS 198
           L  Y NNLTG LP  +GNL+ L       N   G IPT +G   NL  L + +N      
Sbjct: 186 LVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQN------ 239

Query: 199 SFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFS 258
             SG LP +I + L  L+++ + +N F G IP  + N ++LE L L GN   G +  +  
Sbjct: 240 FISGELPKEIGM-LVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIG 298

Query: 259 SLKNLAVLNLERNNLGIGTANDLGF------VTFLTNCSSLKLPHSIANLSSTMTHFYIG 312
           ++K+L  L L +N L      +LG       + F  N  S ++P  ++ +S  +   Y+ 
Sbjct: 299 NMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISE-LRLLYLF 357

Query: 313 GNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSL 372
            N++ GII   +  L NL  L +  N L G IP     L +++ L LF N L G IP  L
Sbjct: 358 QNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGL 417

Query: 373 GNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDL 432
           G  + L  ++ S N L G IP  +    NLI  +     + G +P  +L   +L L L +
Sbjct: 418 GLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSL-LQLRV 476

Query: 433 SHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSIC 472
             N L G    ++  L NL  +++  N+FSG +P  +  C
Sbjct: 477 VGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTC 516

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  221 bits (563), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 161/481 (33%), Positives = 240/481 (49%), Gaps = 42/481 (8%)

Query: 19  WNNTINL-CQWMGVTCGH--RHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFH 75
           WN+  ++ C W GV C +      V  L+LS+  + G LSP +G L  L+ ++LS NG  
Sbjct: 51  WNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLS 110

Query: 76  GEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLK 135
           G+IP+EIGN   LE L+L+NN F G IP  + +   L +L + NN++ G +P EIG+LL 
Sbjct: 111 GKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLS 170

Query: 136 LQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195
           L  L  Y NN++GQLP  +GNL  L       N + G +P+ +G   +LV L + +NQ  
Sbjct: 171 LSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQ-- 228

Query: 196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSI 255
                SG LP +I + L  L ++ + EN F G IP  +SN ++LE L L  NQ  G +  
Sbjct: 229 ----LSGELPKEIGM-LKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPK 283

Query: 256 DFSSLKNLAVLNLERNNLGIGTANDLG------FVTFLTNCSSLKLPHSIANLSSTMTHF 309
           +   L++L  L L RN L      ++G       + F  N  + ++P  + N+   +   
Sbjct: 284 ELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEG-LELL 342

Query: 310 YIGGNQILGIIHFGIRNLVNL-------------IALGMQ-----------SNQLHGTIP 345
           Y+  NQ+ G I   +  L NL             I LG Q            N L GTIP
Sbjct: 343 YLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIP 402

Query: 346 DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGF 405
             +G   +L +L +  N L G IPS L   + +  L L +N+L GNIP  +  C+ L+  
Sbjct: 403 PKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQL 462

Query: 406 DASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVI 465
             +   L G  P  L     ++  ++L  N   GS+  +VGN   L  L ++ N F+G +
Sbjct: 463 RLARNNLVGRFPSNLCKQVNVT-AIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGEL 521

Query: 466 P 466
           P
Sbjct: 522 P 522

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  214 bits (546), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 164/513 (31%), Positives = 245/513 (47%), Gaps = 66/513 (12%)

Query: 12  PSGVTSSWNNTINL-CQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLS 70
           PS +T SWN + +  C W+GV C  R Q V  L+LS+  I G   P + +L  L+ + LS
Sbjct: 42  PSDITQSWNASDSTPCSWLGVEC-DRRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLS 100

Query: 71  DNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV------------- 117
            NGF G IP ++GN   LE ++LS+NSF+G IP  L     L +L +             
Sbjct: 101 GNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESL 160

Query: 118 -----------ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIR 166
                        N L G IP  IG++ +L TL L  N  +G +P  +GN++ LQ +Y+ 
Sbjct: 161 LSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLN 220

Query: 167 GNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFV 226
            N+L G +P TL  L NLVYL+V  N      S  G++P D  V+   +  + ++ N F 
Sbjct: 221 DNNLVGTLPVTLNNLENLVYLDVRNN------SLVGAIPLD-FVSCKQIDTISLSNNQFT 273

Query: 227 GSIPDSLSNASN------------------------LELLELAGNQFEGKVSIDFSSLKN 262
           G +P  L N ++                        L+ L LAGN F G++  +    K+
Sbjct: 274 GGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELGKCKS 333

Query: 263 LAVLNLERNNL------GIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI 316
           +  L L++N L       +G  + L ++   TN  S ++P SI  + S +    +  N +
Sbjct: 334 MIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQS-LQSLQLYQNNL 392

Query: 317 LGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLT 376
            G +   +  L  L++L +  N   G IP  +G   +L++L L  N   G IP +L +  
Sbjct: 393 SGELPVDMTELKQLVSLALYENHFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQK 452

Query: 377 KLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNL 436
           KL  L L  N L+G++P  +G C  L         L G LP   +    L L+ DLS N 
Sbjct: 453 KLKRLLLGYNYLEGSVPSDLGGCSTLERLILEENNLRGGLP-DFVEKQNL-LFFDLSGNN 510

Query: 437 LNGSLLLQVGNLKNLILLDISGNQFSGVIPVTL 469
             G +   +GNLKN+  + +S NQ SG IP  L
Sbjct: 511 FTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPEL 543

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  213 bits (543), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 162/475 (34%), Positives = 235/475 (49%), Gaps = 65/475 (13%)

Query: 47  NQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNL 106
           N+ I G +   +G+ S L  + L++    G +P  +G L +LE L +     SG IP++L
Sbjct: 211 NKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDL 270

Query: 107 SRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIR 166
             CSEL  L +  N L G IP+EIG L KL+ L L+ N+L G +P+ +GN S L++I + 
Sbjct: 271 GNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLS 330

Query: 167 GNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFV 226
            N L G IP+++G L  L    +++N+      FSGS+P  I  N  +L +L + +N   
Sbjct: 331 LNLLSGSIPSSIGRLSFLEEFMISDNK------FSGSIPTTI-SNCSSLVQLQLDKNQIS 383

Query: 227 GSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNL------GIGTAND 280
           G IP  L   + L L     NQ EG +    +   +L  L+L RN+L      G+    +
Sbjct: 384 GLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRN 443

Query: 281 LGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQL 340
           L  +  ++N  S  +P  I N SS +    +G N+I G I  GI +L  +  L   SN+L
Sbjct: 444 LTKLLLISNSLSGFIPQEIGNCSS-LVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRL 502

Query: 341 HGTIPDVIGELKNLQILSLFGNFLHGS------------------------IPSSLGNLT 376
           HG +PD IG    LQ++ L  N L GS                        IP+SLG L 
Sbjct: 503 HGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLV 562

Query: 377 KLANLELSSNSLQGNIPLSVGNCQNL-------------------------IGFDASHIT 411
            L  L LS N   G+IP S+G C  L                         I  + S   
Sbjct: 563 SLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNR 622

Query: 412 LTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIP 466
           LTG +P ++ S+  LS+ LDLSHN+L G  L  + N++NL+ L+IS N FSG +P
Sbjct: 623 LTGKIPSKIASLNKLSI-LDLSHNMLEGD-LAPLANIENLVSLNISYNSFSGYLP 675

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  213 bits (541), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 157/462 (33%), Positives = 234/462 (50%), Gaps = 39/462 (8%)

Query: 39  RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF 98
            +T L L+N  + G LS  + NL+ L+   L  N   G++P+EIG L +LE + L  N F
Sbjct: 386 ELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRF 445

Query: 99  SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS 158
           SG +P  +  C+ L  +    N+L G+IP  IG L  L  L L  N L G +P  +GN  
Sbjct: 446 SGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCH 505

Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK- 217
            + VI +  N L G IP++ G L  L    +      Y +S  G+LP D L+NL NL + 
Sbjct: 506 QMTVIDLADNQLSGSIPSSFGFLTALELFMI------YNNSLQGNLP-DSLINLKNLTRI 558

Query: 218 -------------LC---------IAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSI 255
                        LC         + EN F G IP  L  ++NL+ L L  NQF G++  
Sbjct: 559 NFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPR 618

Query: 256 DFSSLKNLAVLNLERNNLGIGTANDLGFVTFLT------NCSSLKLPHSIANLSSTMTHF 309
            F  +  L++L++ RN+L      +LG    LT      N  S  +P  +  L   +   
Sbjct: 619 TFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKL-PLLGEL 677

Query: 310 YIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIP 369
            +  N+ +G +   I +L N++ L +  N L+G+IP  IG L+ L  L+L  N L G +P
Sbjct: 678 KLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLP 737

Query: 370 SSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL-IGFDASHITLTGALPQQLLSITTLSL 428
           S++G L+KL  L LS N+L G IP+ +G  Q+L    D S+   TG +P  + ++  L  
Sbjct: 738 STIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLE- 796

Query: 429 YLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470
            LDLSHN L G +  Q+G++K+L  L++S N   G +    S
Sbjct: 797 SLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFS 838

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  210 bits (534), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 164/487 (33%), Positives = 231/487 (47%), Gaps = 39/487 (8%)

Query: 10  HDPSGVTSSWNN-TINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYIN 68
           +D +G  +SWN    N C W G+ C H  + VT +DL+   + G LSP +  L  LR +N
Sbjct: 39  NDSNGYLASWNQLDSNPCNWTGIACTHL-RTVTSVDLNGMNLSGTLSPLICKLHGLRKLN 97

Query: 69  LSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPK 128
           +S N   G IPQ++     LE L+L  N F G IP  L+    L  L +  N L G IP+
Sbjct: 98  VSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPR 157

Query: 129 EIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLN 188
           +IG+L  LQ L +Y NNLTG +P  +  L  L++I    N   G IP+ +    +L  L 
Sbjct: 158 QIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLG 217

Query: 189 VNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ 248
           + EN         GSLP   L  L NL  L + +N   G IP S+ N S LE+L L  N 
Sbjct: 218 LAENL------LEGSLPKQ-LEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENY 270

Query: 249 FEGKVSIDFSSLKNLAVLNLERNNLG------IGTANDLGFVTFLTN------------C 290
           F G +  +   L  +  L L  N L       IG   D   + F  N             
Sbjct: 271 FTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHI 330

Query: 291 SSLKLPHSIANL-----------SSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQ 339
            +LKL H   N+            + +    +  N++ G I   ++ L  L+ L +  NQ
Sbjct: 331 LNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQ 390

Query: 340 LHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC 399
           L G IP +IG   N  +L +  N L G IP+       L  L L SN L GNIP  +  C
Sbjct: 391 LEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTC 450

Query: 400 QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN 459
           ++L         LTG+LP +L ++  L+  L+L  N L+G++   +G LKNL  L ++ N
Sbjct: 451 KSLTKLMLGDNQLTGSLPIELFNLQNLT-ALELHQNWLSGNISADLGKLKNLERLRLANN 509

Query: 460 QFSGVIP 466
            F+G IP
Sbjct: 510 NFTGEIP 516

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	472
255585471	963	serine-threonine protein kinase, plant-t	0.978	0.479	0.476	1e-112
224097748	1032	predicted protein [Populus trichocarpa]	0.980	0.448	0.465	1e-104
224115346	1017	predicted protein [Populus trichocarpa]	0.980	0.455	0.462	1e-103
359482058	1040	PREDICTED: probable LRR receptor-like se	0.980	0.445	0.452	1e-101
147853780	1904	hypothetical protein VITISV_030954 [Viti	0.980	0.243	0.452	1e-101
255577438	1028	receptor-kinase, putative [Ricinus commu	0.976	0.448	0.432	7e-99
224119102	1007	predicted protein [Populus trichocarpa]	0.978	0.458	0.442	1e-98
255575908	988	serine-threonine protein kinase, plant-t	0.976	0.466	0.455	3e-98
356566660	1020	PREDICTED: probable LRR receptor-like se	0.968	0.448	0.433	3e-98
357505893	1003	Receptor kinase-like protein [Medicago t	0.968	0.455	0.435	1e-97

>gi|255585471|ref|XP_002533428.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526716|gb|EEF28948.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/493 (47%), Positives = 315/493 (63%), Gaps = 31/493 (6%)

Query: 10  HDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINL 69
           HDP  V  SWN TI+ CQW GVTCG  H+RVT LDL + +I G +SPY+GNLSFLR +N+
Sbjct: 53  HDPFQVLRSWNETIHFCQWQGVTCGLLHRRVTVLDLHSLKISGSISPYIGNLSFLRALNI 112

Query: 70  SDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKE 129
            +N F  EIPQ+IG L RLE+L L+NNS  G IPTN+SRCS L  + +  NKLEG +P+E
Sbjct: 113 QNNSFGHEIPQQIGYLRRLEELRLNNNSVGGKIPTNISRCSNLVFISLGKNKLEGNVPEE 172

Query: 130 IGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV 189
           +G L  LQ L+++ N LTG +P  +GNLS LQ + +  N + G++P +LG LRNL +L++
Sbjct: 173 LGVLSNLQVLSIFGNKLTGSIPHSLGNLSQLQRLSLAENRMVGEVPNSLGWLRNLTFLSL 232

Query: 190 NENQ--------FWYVSS----------FSGSLPFDILVNLPNLKKLCIAENNFVGSIPD 231
             N+         + +SS          F G+LP DI   LPN++   I+ N F G IP 
Sbjct: 233 RSNRLSGTIPSSLFNLSSIRNLDIGENNFHGNLPSDIGFLLPNIRWFAISSNEFTGKIPV 292

Query: 232 SLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS 291
           SLSNA+NLE L L  N   G+V    + L  L V +L  NNLG G A+DL F+  LTN +
Sbjct: 293 SLSNATNLESLLLLQNNLTGEVP-SLAKLDRLRVFSLTSNNLGTGKADDLSFLHSLTNTT 351

Query: 292 SLK------------LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQ 339
           +L+            LP SIANLS+T+    +  N+I+G I  GI NLV+L    + +NQ
Sbjct: 352 ALEELGVNGNNFGGMLPDSIANLSTTLRILLLDNNRIIGSIPSGIENLVSLEDFEVWNNQ 411

Query: 340 LHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC 399
           L G IPD IG+L+NL +L+L  N L G IPSSLGNLT L  L +  N+L G IP  +G C
Sbjct: 412 LSGFIPDSIGKLQNLVVLALNSNMLSGHIPSSLGNLTNLIQLLVEDNNLSGRIPSDLGRC 471

Query: 400 QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN 459
           QN++G   S    +G++P +++SI++LS+YLDLS N L G+L ++VGNLK+L   D+SGN
Sbjct: 472 QNMLGLSLSQNNFSGSIPPEVISISSLSIYLDLSQNNLTGTLPMEVGNLKSLSEFDVSGN 531

Query: 460 QFSGVIPVTLSIC 472
           + SG IP TL  C
Sbjct: 532 KLSGEIPRTLGSC 544

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097748|ref|XP_002311065.1| predicted protein [Populus trichocarpa] gi|222850885|gb|EEE88432.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/494 (46%), Positives = 308/494 (62%), Gaps = 31/494 (6%)

Query: 9   QHDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYIN 68
           + DP G  SSWN++ + C+W GVTCG RHQRV ELDL++ ++ G LSP++GNLSFLR +N
Sbjct: 46  EADPLGTLSSWNDSSHFCEWSGVTCGRRHQRVVELDLNSCKLVGSLSPHIGNLSFLRILN 105

Query: 69  LSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPK 128
           L++N F   IPQEIG L+RL+KL L NN+F+G IP N+SRCS L HL +  N+L G +P 
Sbjct: 106 LNNNSFSHTIPQEIGRLFRLQKLLLRNNTFTGEIPVNISRCSNLLHLYLGGNELTGGLPG 165

Query: 129 EIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLN 188
           E+GSL K+Q      NNL G++P   GNLS+++ I+   N+L G IP   G L+ L  L 
Sbjct: 166 ELGSLSKMQWFVFEINNLVGEIPISFGNLSSVEAIFGGANNLRGGIPKNFGQLKRLKNLV 225

Query: 189 VNENQF------------------WYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIP 230
            N N                       +   GSLP D+ + LPNL+ L +  N+F G IP
Sbjct: 226 FNINNLSGTIPPSIYNLSSLTTLSLSSNQLHGSLPSDLGLTLPNLETLGLHTNHFSGLIP 285

Query: 231 DSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNC 290
            SL NASN+ +++L+ N+F GKV  D   +  L  L ++ N+LG    +DLGF+  L N 
Sbjct: 286 ASLFNASNITVIDLSSNKFTGKVP-DLGHMPKLRRLVIQTNDLGNNEDDDLGFLYPLANN 344

Query: 291 SSLK------------LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSN 338
           ++L+            LP  I+N S  + H   G NQI GII   I NLVNL  LG++ N
Sbjct: 345 TNLQVLGINDNNLGGALPEKISNFSIKLIHMTFGRNQIRGIIPTDIGNLVNLQTLGLEMN 404

Query: 339 QLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGN 398
           QL GTIP  IG+L+NL++LSL  N + GSIPSSLGN T L NLEL +N+L G+IP S+ N
Sbjct: 405 QLTGTIPSSIGKLRNLRVLSLRSNKISGSIPSSLGNCTSLINLELHANNLNGSIPSSLEN 464

Query: 399 CQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISG 458
           CQNL+    S   L+G +P++L+ I++LS YLDLS N L GSL ++V  L NL  L +S 
Sbjct: 465 CQNLLSLLLSRNNLSGPIPKELMRISSLSRYLDLSENQLTGSLPMEVDKLVNLGYLTVSY 524

Query: 459 NQFSGVIPVTLSIC 472
           N+ SG IP TL  C
Sbjct: 525 NRLSGEIPRTLGSC 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115346|ref|XP_002317009.1| predicted protein [Populus trichocarpa] gi|222860074|gb|EEE97621.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 228/493 (46%), Positives = 312/493 (63%), Gaps = 30/493 (6%)

Query: 10  HDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINL 69
           HDP  +  SWN++++ CQW GV CG RH+RVT L L +  + G +SP +GNLSFL  ++L
Sbjct: 52  HDPQNIFGSWNDSLHFCQWQGVRCGRRHERVTVLKLESSGLVGSISPALGNLSFLWGLDL 111

Query: 70  SDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKE 129
           S+N   G+IP  +G L+RL+ L L+NNSF G IP NLS CS+L +L +A+N L G+IP E
Sbjct: 112 SNNTLQGKIPDGLGRLFRLQILVLNNNSFVGEIPGNLSHCSKLDYLGLASNNLVGKIPAE 171

Query: 130 IGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV 189
           + SL KL+ L ++ NNL+G +P F+GNL++L  I    N+  G+IP TLG L+NL  L +
Sbjct: 172 LVSLSKLEKLVIHKNNLSGAIPPFIGNLTSLNSISAAANNFQGRIPDTLGQLKNLESLGL 231

Query: 190 NEN------------------QFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPD 231
             N                       +   G LP DI V+LPNL+ + I  N F GSIP 
Sbjct: 232 GTNFLSGTIPLPIYNLSTLSILSLSENQLQGYLPSDIGVSLPNLQYIQIRANQFSGSIPL 291

Query: 232 SLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS 291
           S+SN+SNL++LE   N F GK+S++F  LK+LAV++L  N +G G   +L F+  L NC+
Sbjct: 292 SISNSSNLQVLEAGDNSFSGKLSVNFGGLKHLAVVSLSFNKMGSGEPGELSFLDSLINCT 351

Query: 292 SL------------KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQ 339
           SL             LP+S+ NLS+ +T   +G NQ+ G IH GI NL+NL  LG++ NQ
Sbjct: 352 SLYAIDIVGNHFEGMLPNSLGNLSTGLTFLGLGQNQLFGGIHSGIGNLINLNTLGLEFNQ 411

Query: 340 LHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC 399
           L G IP  IG+L+ LQ  SL  N L G IPSS+GNLT L   +L  N LQG IP S+GNC
Sbjct: 412 LSGPIPLDIGKLRMLQRFSLSYNRLSGHIPSSIGNLTLLLEFDLQGNQLQGTIPSSIGNC 471

Query: 400 QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN 459
           Q L+    S   L+G  P++L +I++LS+ LDLS N  NGSL  ++G+LK+L  L++S N
Sbjct: 472 QKLLLLHLSRNNLSGNAPKELFAISSLSVSLDLSQNYFNGSLPSEIGSLKSLAKLNVSYN 531

Query: 460 QFSGVIPVTLSIC 472
           +FSG IP TL+ C
Sbjct: 532 EFSGEIPSTLASC 544

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/493 (45%), Positives = 302/493 (61%), Gaps = 30/493 (6%)

Query: 10  HDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINL 69
            DP G+T+SWN++++ C W GVTCGHRHQRV  L+L++  + G LSP +GNL+FL  +NL
Sbjct: 53  QDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLHLVGSLSPSIGNLTFLTGLNL 112

Query: 70  SDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKE 129
             N FHG+IPQE+G L RL  L L+NNSFSG IP NLSRCS L + R+  N L G+IP  
Sbjct: 113 ELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVYFRLGFNNLIGRIPSW 172

Query: 130 IGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV 189
           +GS  K+  + L+YNNLTG +PD +GNL++++ +    N L G IP  LG L+ L ++ +
Sbjct: 173 LGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSIPQALGQLQTLEFMGL 232

Query: 190 NENQF--------WYVSSFS----------GSLPFDILVNLPNLKKLCIAENNFVGSIPD 231
             N F        + +SS            GSLP+D+   LPNL+ L I  N+F GS+P 
Sbjct: 233 GMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQVLNIGNNDFTGSLPS 292

Query: 232 SLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS 291
           SLSNASNL   ++  + F GKVSIDF  + NL  L L  N LG G A+DL F+  L  C 
Sbjct: 293 SLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGKGEADDLSFLNSLMKCR 352

Query: 292 SLK------------LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQ 339
           +LK            LP+SIANLS+ +    +  NQ+ G I  GI NLVNL  L + +N 
Sbjct: 353 ALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPGIGNLVNLTDLILANND 412

Query: 340 LHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC 399
             G+IP +IG L+ L  + L  N L G IPSSLGN+T+L +L L +N L G IP S GN 
Sbjct: 413 FTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHLQNNHLSGKIPSSFGNL 472

Query: 400 QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN 459
             L   D S+ +L G +P++++ + +L++ L+L+ N L G L  +V  LKNL  LD+S N
Sbjct: 473 LYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLLPSEVRKLKNLGHLDVSEN 532

Query: 460 QFSGVIPVTLSIC 472
           + SG IP  L  C
Sbjct: 533 KLSGEIPDGLGSC 545

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/493 (45%), Positives = 301/493 (61%), Gaps = 30/493 (6%)

Query: 10  HDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINL 69
            DP G+T+SWN++++ C W GVTCGHRHQRV  L+LS+  + G LSP +GNL+FL  +NL
Sbjct: 84  QDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLSSLHLVGSLSPSIGNLTFLTGLNL 143

Query: 70  SDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKE 129
             N FHG+IPQE+G L RL  L L+NNSFSG IP NLSRCS L + R+  N L G+IP  
Sbjct: 144 ELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVYFRLGFNNLIGRIPSW 203

Query: 130 IGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV 189
           +GS  K+  + L+YNNLTG +PD +GNL++++ +    N L G IP  LG L+ L ++ +
Sbjct: 204 LGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSIPQALGQLQTLEFMGL 263

Query: 190 NENQF--------WYVSSFS----------GSLPFDILVNLPNLKKLCIAENNFVGSIPD 231
             N F        + +SS            GSLP+D+   LPNL+ L I  N+F G +P 
Sbjct: 264 GMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQVLNIGNNDFTGPLPS 323

Query: 232 SLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS 291
           SLSNASNL   ++  + F GKVSIDF  + NL  L L  N LG G A+DL F+  L  C 
Sbjct: 324 SLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGKGEADDLSFLNSLMKCR 383

Query: 292 SLK------------LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQ 339
           +LK            LP+SIANLS+ +    +  NQ+ G I  GI NLVNL  L + +N 
Sbjct: 384 ALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPGIGNLVNLTDLILANND 443

Query: 340 LHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC 399
             G+IP +IG L+ L  + L  N L G IPSSLGN+T+L +L L +N L G IP S GN 
Sbjct: 444 FTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHLQNNHLSGKIPSSFGNL 503

Query: 400 QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN 459
             L   D S+ +L G +P++++ + +L++ L+L+ N L G L  +V  LKNL  LD+S N
Sbjct: 504 LYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLLPSEVRKLKNLGHLDVSEN 563

Query: 460 QFSGVIPVTLSIC 472
           + SG IP  L  C
Sbjct: 564 KLSGEIPDGLGSC 576

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis]

 Score =  367 bits (942), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 213/492 (43%), Positives = 303/492 (61%), Gaps = 31/492 (6%)

Query: 11  DPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLS 70
           DP  + SSWN +++ C+W G+TCG RHQRV E+DL + R+ G L+ ++GNLSFLR +NL 
Sbjct: 49  DPLHILSSWNESLHFCKWSGITCGSRHQRVIEIDLESSRLSGSLTAFIGNLSFLRVLNLQ 108

Query: 71  DNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEI 130
           +N     IPQEIG L+RL  L L  NSFSG IP N+S CS L  LR+  N L G++P E+
Sbjct: 109 NNSLSHYIPQEIGRLFRLRTLILRRNSFSGEIPVNISYCSNLLTLRLGRNNLTGKLPAEL 168

Query: 131 GSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVN 190
            SL KLQ      N LTG++     NLS+L++IY   N+  G+IP ++G L++L   ++ 
Sbjct: 169 KSLSKLQMFEFEINYLTGEISPSFSNLSSLEIIYGTRNNFHGEIPNSIGQLKSLQTFSLG 228

Query: 191 ENQF--------WYVSSFS----------GSLPFDILVNLPNLKKLCIAENNFVGSIPDS 232
            + F        + +SS +          G+LP D+  +LP L+ L +  N F GSIP +
Sbjct: 229 GSNFSGVIPPSIFNLSSLTILSVPINQLHGNLPPDLGQSLPKLEVLRLYANKFSGSIPPT 288

Query: 233 LSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSS 292
           +SNASNL  L+++ N F GKV    + L NL+ + + +NNLG G  +DL F+  L N ++
Sbjct: 289 ISNASNLVALDVSQNNFTGKVP-SLARLHNLSYIGIHKNNLGNGEDDDLSFLYTLANNTN 347

Query: 293 LK------------LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQL 340
           L+            LP  ++N S+ + H   G N+I G I   I NL+ L ALG + N+L
Sbjct: 348 LEILAITENNLGGVLPEMLSNFSTKLVHMAFGRNKIRGRIPSEIDNLIRLEALGFERNEL 407

Query: 341 HGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQ 400
            G+IP  +G+LKNL  L L  N + GSIPSSLGN+T L+ + L  N+L+G+IP S+GNCQ
Sbjct: 408 TGSIPSSLGKLKNLIKLYLNDNNISGSIPSSLGNITSLSTISLKVNNLEGSIPSSLGNCQ 467

Query: 401 NLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQ 460
            ++  D S   L+G +P++L+SI +LS+ LDLS N   GSL ++VG L NL  LD+S N+
Sbjct: 468 QMLLMDLSRNNLSGTIPKELISIPSLSISLDLSENQFTGSLPMEVGGLVNLGYLDVSKNK 527

Query: 461 FSGVIPVTLSIC 472
            SG IP +L  C
Sbjct: 528 LSGEIPKSLGSC 539

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119102|ref|XP_002331325.1| predicted protein [Populus trichocarpa] gi|222873908|gb|EEF11039.1| predicted protein [Populus trichocarpa]

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 218/493 (44%), Positives = 303/493 (61%), Gaps = 31/493 (6%)

Query: 10  HDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINL 69
           HDP G+   WN++I+ C W GVTC  +HQRV  LDL + ++ G +SPY+GNLSFLR + L
Sbjct: 48  HDPLGIMRLWNSSIHFCHWFGVTCSQKHQRVAVLDLQSLKLSGSVSPYIGNLSFLRNLYL 107

Query: 70  SDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKE 129
             N F  EIP +IG+L+RL+ L L NNSF+G IP ++S    L  L + NNKL G+IPKE
Sbjct: 108 QHNSFSHEIPAQIGHLHRLQILALHNNSFTGEIPASMSSSYNLVSLILDNNKLTGEIPKE 167

Query: 130 IGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV 189
            GS LKL  L +  NNL G +P  +GN+S+LQ +++  N+L G +P TL  L NL  L++
Sbjct: 168 FGSFLKLTDLYIDDNNLVGTIPPSLGNISSLQELWLDDNNLFGNLPATLSKLVNLRVLSL 227

Query: 190 NENQF------------------WYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPD 231
             N+F                    ++ F G+LP D+ ++LPNL+   I  N F GS+P 
Sbjct: 228 FNNRFSGTIPPSMLNLSSLRTFQVGLNHFQGNLPPDLGISLPNLEFFSIYSNQFTGSVPV 287

Query: 232 SLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS 291
           S+SN SNLE+LEL  N+  GK+      L+ L  + +  NNLG G ANDL F++ LTN +
Sbjct: 288 SISNLSNLEMLELNLNKLRGKMP-SLEKLQRLLSITIASNNLGSGEANDLSFLSSLTNAT 346

Query: 292 SL------------KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQ 339
           +L            +LP  I+NLS+T+    +  N + G I  GI NL++L    +Q+N 
Sbjct: 347 NLEELIITQNNFQGQLPPQISNLSTTLEIMGLDSNLLFGSIPDGIENLISLNDFEVQNNH 406

Query: 340 LHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC 399
           L G IP  IG+L+NL+IL L  N   G IPSSLGNLT L  L L+  ++QG+IP S+ NC
Sbjct: 407 LSGIIPSTIGKLQNLEILGLALNNFSGDIPSSLGNLTNLIGLYLNDINVQGSIPSSLANC 466

Query: 400 QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN 459
             L+  D S   +TG++P  +  +++LS+ LDLS N L+GSL  +VGNL+NL +  ISGN
Sbjct: 467 NKLLELDLSGNYITGSIPPGIFGLSSLSINLDLSRNHLSGSLPKEVGNLENLEIFAISGN 526

Query: 460 QFSGVIPVTLSIC 472
             SG IP +L+ C
Sbjct: 527 MISGKIPSSLAQC 539

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575908|ref|XP_002528851.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223531702|gb|EEF33525.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 224/492 (45%), Positives = 298/492 (60%), Gaps = 31/492 (6%)

Query: 11  DPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLS 70
           DP G+ SSWN++++ CQW GVTCG RHQRVT LDL + ++ G +SPYVGNLSFLR + L 
Sbjct: 60  DPLGMMSSWNSSLHFCQWHGVTCGRRHQRVTMLDLGSLKLSGSISPYVGNLSFLRKLYLE 119

Query: 71  DNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEI 130
           +N F  +IP + G+L RL+ L L NNSF G IP N+S CS L +L +  NKL G+IP ++
Sbjct: 120 NNSFSHDIPPQSGHLRRLQILSLYNNSFGGEIPPNISACSNLVYLYLDGNKLVGKIPSQL 179

Query: 131 GSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVN 190
            SL+KL+      NNL G +P  +GNLS+L  +    N L G +P +LG L NL YL + 
Sbjct: 180 TSLMKLKEFFFGRNNLIGTIPPSLGNLSSLWTLSGDTNKLHGVLPESLGRLTNLKYLALF 239

Query: 191 ENQF--------WYVSS----------FSGSLPFDILVNLPNLKKLCIAENNFVGSIPDS 232
           EN+F        + +SS            G+LP  + ++LP L+ + I+ N F GSIP S
Sbjct: 240 ENRFSGTIPSSVFNISSIVHIDVEGNHLQGTLPMSLGISLPQLQFISISSNQFTGSIPTS 299

Query: 233 LSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSS 292
           +SNASNL   E++ N   G V      L NL+ L++  N+LG G A+DL F+  LTN ++
Sbjct: 300 ISNASNLANFEISANNLTGNVP-SLEKLNNLSFLSIGLNHLGSGRADDLKFLADLTNATA 358

Query: 293 L------------KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQL 340
           L            KLP +IANLS  +  F+I  NQ+ G I  GI  LVNL  L    N+ 
Sbjct: 359 LQILNIGMDNFGGKLPENIANLSKKLEIFFINNNQLHGNIPAGIEVLVNLNFLYASWNKF 418

Query: 341 HGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQ 400
            GTIP  IG+LKNL+ L L  N   G+IPSSL NLT L  +  S N+LQG IP S+ NC 
Sbjct: 419 SGTIPSSIGKLKNLRELYLNNNNFLGNIPSSLANLTNLLEIYFSYNNLQGMIPSSLANCT 478

Query: 401 NLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQ 460
           +L+  D S+  LTG +P+ L  ++ LS +LDLS N L+GSL  +VGNLK L +L +  N 
Sbjct: 479 SLLALDLSNNILTGPIPRNLFELSYLSKFLDLSANRLHGSLPNEVGNLKQLGILALQENM 538

Query: 461 FSGVIPVTLSIC 472
            SG IP  L  C
Sbjct: 539 LSGEIPSDLGSC 550

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566660|ref|XP_003551548.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 206/475 (43%), Positives = 293/475 (61%), Gaps = 18/475 (3%)

Query: 10  HDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINL 69
           HDP  + S WN++I+ C W+G+TC + + RV  L LS+  + G L P +GNL+FL  +NL
Sbjct: 61  HDPFHIMSLWNDSIHHCNWLGITCNNSNGRVMYLILSDMTLSGTLPPSIGNLTFLTRLNL 120

Query: 70  SDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKE 129
            ++ FHGE P E+G L  L+ + +S NSF G+IP+NLS C+EL+ L   +N   G IP  
Sbjct: 121 RNSSFHGEFPHEVGLLQYLQHINISYNSFGGSIPSNLSHCTELSILSAGHNNYTGTIPAW 180

Query: 130 IGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV 189
           IG+   L  L L  NNL G +P+ +G LS L ++ + GN L G IP T+  + +L +  V
Sbjct: 181 IGNSSSLSLLNLAVNNLHGNIPNEIGQLSRLTLLALNGNYLSGTIPGTIFNISSLFFFTV 240

Query: 190 NENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQF 249
           ++N         G++P D+    PNL+      N+F G+IP+SLSNAS LE+L+ A N  
Sbjct: 241 SQNHL------HGNIPADVGYTFPNLETFAGGVNSFTGTIPESLSNASRLEILDFAENGL 294

Query: 250 EGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLK------------LPH 297
            G +  +   L  L  LN + N LG G A DL F+  L NC++LK            LP 
Sbjct: 295 TGTLPKNIGRLPLLKRLNFDDNRLGTGKAGDLNFLASLVNCTALKVLGLSDNSFGGELPS 354

Query: 298 SIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQIL 357
           +IANLS+ +T   +GGN I G +  GIRNLVNL  LG++ N L G +P  IG L+ L  L
Sbjct: 355 TIANLSTQLTSLTLGGNGIHGSVPIGIRNLVNLTFLGLEENNLSGFVPHTIGMLRLLNGL 414

Query: 358 SLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALP 417
            L GN   G IPSS+GNLT+L  L++  N+ +G+IP ++G CQ+L+  + SH  L G +P
Sbjct: 415 DLNGNNFSGVIPSSIGNLTRLTRLQMEENNFEGSIPANLGKCQSLLMLNLSHNMLNGTIP 474

Query: 418 QQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSIC 472
           +Q+L++++LS+YLDLSHN L G +L +VG L NL  LD+S N+ SG+IP +L  C
Sbjct: 475 RQVLTLSSLSIYLDLSHNALTGPVLAEVGKLVNLAQLDLSENKLSGMIPSSLGSC 529

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505893|ref|XP_003623235.1| Receptor kinase-like protein [Medicago truncatula] gi|355498250|gb|AES79453.1| Receptor kinase-like protein [Medicago truncatula]

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 207/475 (43%), Positives = 292/475 (61%), Gaps = 18/475 (3%)

Query: 10  HDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINL 69
            DP    S WN++I+ C W+G+TC   + RV  L L++  + G LSP +GNL++L  +NL
Sbjct: 56  QDPFQALSLWNDSIHHCNWLGITCNISNGRVMHLILADMTLAGTLSPSIGNLTYLTKLNL 115

Query: 70  SDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKE 129
            +N FHGE PQ++GNL  L+ L +S NSFSG+IP+NLS+C EL+ L   +N   G IP  
Sbjct: 116 RNNSFHGEFPQQVGNLLYLQHLNISYNSFSGSIPSNLSQCIELSILSSGHNNFTGTIPTW 175

Query: 130 IGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV 189
           IG+   L  L L  NNL G +P+ VG LS L +  + GN L G IP ++  + +L +L  
Sbjct: 176 IGNFSSLSLLNLAVNNLHGTIPNEVGKLSRLTLFALNGNHLYGTIPLSVFNISSLSFLTF 235

Query: 190 NENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQF 249
           ++N      +  G+LP+D+   LPNL+      N+F G+IP+SLSNAS LE+L+ A N  
Sbjct: 236 SQN------NLHGNLPYDVGFTLPNLETFAGGVNDFTGTIPESLSNASRLEILDFAENNL 289

Query: 250 EGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL------------KLPH 297
            G +  +   L  L  LN + N LG G   +L F+T L NC++L            KLP 
Sbjct: 290 IGTLPKNIGRLTLLKRLNFDTNRLGNGEDGELNFLTSLINCTALEVLGLAENQFGGKLPS 349

Query: 298 SIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQIL 357
           SI NLS  +    +G N I G I  GI NLVNL +LGM+ N L G +PD IG L+ L  L
Sbjct: 350 SIGNLSINLNALDLGENAIYGSIPIGISNLVNLTSLGMEKNNLSGFVPDTIGMLQKLVDL 409

Query: 358 SLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALP 417
            L+ N   G IPSS+GNLT+L  L ++ N+ +G+IP S+ NCQ L+  + SH  L G++P
Sbjct: 410 ELYSNKFSGVIPSSIGNLTRLTKLLIADNNFEGSIPTSLENCQRLLMLNLSHNMLNGSIP 469

Query: 418 QQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSIC 472
           +Q+ ++++LS+YLDLSHN L GSL  ++G L NL  LD+S N+ SG+IP ++  C
Sbjct: 470 RQVFALSSLSIYLDLSHNSLTGSLPFEIGKLVNLANLDLSKNKLSGMIPSSIGSC 524

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	472
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.953	0.553	0.350	5.1e-67
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.947	0.442	0.368	6.2e-63
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.843	0.388	0.380	8.9e-63
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.841	0.393	0.354	7.1e-59
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.896	0.410	0.332	1e-58
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.940	0.439	0.337	1.1e-57
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.938	0.432	0.334	4.3e-57
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.955	0.384	0.322	4.5e-54
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.944	0.396	0.319	8.3e-54
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.951	0.400	0.329	4.3e-52

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 165/471 (35%), Positives = 238/471 (50%)

Query:    17 SSWNNTIN--LCQWMGVTCGHRH-QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNG 73
             +SWN + +   C W+GV CG RH  RV +L L +  + G++SP +GNLSFLR + LSDN 
Sbjct:    54 ASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGIISPSLGNLSFLRTLQLSDNH 113

Query:    74 FHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSL 133
               G+IPQE+  L RL++L L+ NS SG IP  L   + L+ L + NN L G IP  +G L
Sbjct:   114 LSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTNNTLSGAIPSSLGKL 173

Query:   134 LKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
               L  LAL  N L+G +P   G L  L  + +  N+L G IP  +  + +L    V  N+
Sbjct:   174 TGLTDLALAENTLSGSIPSSFGQLRRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNK 233

Query:   194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKV 253
                    SG+LP +   NLP+L+++ +  N F G IP                N F G V
Sbjct:   234 L------SGTLPTNAFSNLPSLQEVYMYYNQFHGRIPASIGNASNISIFTIGLNSFSGVV 287

Query:   254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLK------------LPHSIAN 301
               +   ++NL  L L          ND  F+T LTNCS+L+            LP S++N
Sbjct:   288 PPEIGRMRNLQRLELPETLSEAEETNDWKFMTALTNCSNLQEVELGGCKFGGVLPDSVSN 347

Query:   302 LSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFG 361
             LSS++    I  N+I G +   I NLVNL  L + +N L G++P    +LKNL+ L++  
Sbjct:   348 LSSSLVSLSIRDNKISGSLPRDIGNLVNLQYLSLANNSLTGSLPSSFSKLKNLRRLTVDN 407

Query:   362 NFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLL 421
             N L GS+P ++GNLT+L N+E+  N+  G IP ++GN   L   +  H    G +P ++ 
Sbjct:   408 NKLIGSLPLTIGNLTQLTNMEVQFNAFGGTIPSTLGNLTKLFQINLGHNNFIGQIPIEIF 467

Query:   422 SITTXXXXXXXXXXXXXXXXXXXXXXXKNLILLDISGNQFSGVIPVTLSIC 472
             SI                         KN++      N+ SG  P T+  C
Sbjct:   468 SIPALSEILDVSHNNLEGSIPKEIGKLKNIVEFHADSNKLSGENPSTIGEC 518

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 6.2e-63, P = 6.2e-63
 Identities = 173/469 (36%), Positives = 239/469 (50%)

Query:    11 DPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLS 70
             D   V SSWN++  LC W GVTCG +++RVT L+L   ++GGV+SP +GNLSFL  ++L 
Sbjct:    39 DKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFLVSLDLY 98

Query:    71 DNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEI 130
             +N F G IPQE+G L RLE L++  N   G IP  L  CS L +LR+ +N+L G +P E+
Sbjct:    99 ENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSEL 158

Query:   131 GSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVN 190
             GSL  L  L LY NN+ G+LP  +GNL+ L+ + +  N+L G+IP+ +  L  +  L + 
Sbjct:   159 GSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLV 218

Query:   191 ENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI-PDXXXXXXXXXXXXXXGNQF 249
              N      +FSG  P   L NL +LK L I  N+F G + PD              GN F
Sbjct:   219 AN------NFSGVFP-PALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYF 271

Query:   250 EGKVSIDFSSLKNLAVLNLERNNL-G----IGTANDLGFVTFLTNC----SS--LKLPHS 298
              G +    S++  L  L +  NNL G     G   +L  +   TN     SS  L+   S
Sbjct:   272 TGSIPTTLSNISTLERLGMNENNLTGSIPTFGNVPNLKLLFLHTNSLGSDSSRDLEFLTS 331

Query:   299 IANLSSTMTHFYIGGNQILGIIHFGIRNL-VNLIALGMQSNQLHGTIPDVIGELKNLQIL 357
             + N +   T   IG N++ G +   I NL   L+ L +    + G+IP  IG L NLQ L
Sbjct:   332 LTNCTQLET-LGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKL 390

Query:   358 SLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALP 417
              L  N L G +P+SLG L  L  L L SN L G IP  +GN   L   D S+    G +P
Sbjct:   391 ILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVP 450

Query:   418 QQLLSITTXXXXXXXXXXXXXXXXXXXXXXXKNLILLDISGNQFSGVIP 466
               L + +                        + L+ LD+SGN   G +P
Sbjct:   451 TSLGNCS-HLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLP 498

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 8.9e-63, P = 8.9e-63
 Identities = 160/420 (38%), Positives = 232/420 (55%)

Query:    15 VTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGF 74
             V  SWN+++ LC W GV CG +H+RVT +DL   ++ GV+SP+VGNLSFLR +NL+DN F
Sbjct:    58 VLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFF 117

Query:    75 HGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLL 134
             HG IP E+GNL+RL+ L +SNN F G IP  LS CS L+ L +++N LE  +P E GSL 
Sbjct:   118 HGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLS 177

Query:   135 KLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF 194
             KL  L+L  NNLTG+ P  +GNL++LQ++    N + G+IP  +  L+ +++  +  N+F
Sbjct:   178 KLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKF 237

Query:   195 WYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI-PDXXXXXXXXXXXXXXGNQFEGKV 253
                   +G  P  I  NL +L  L I  N+F G++ PD               N F G +
Sbjct:   238 ------NGVFPPPIY-NLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFTGTI 290

Query:   254 SIDFSSLKNLAVLNLERNNL------GIGTANDLGFVTF----LTNCSS--LKLPHSIAN 301
                 S++ +L  L++  N+L        G   +L  +      L N SS  L    ++ N
Sbjct:   291 PETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLGALTN 350

Query:   302 LSSTMTHFYIGGNQILGIIHFGIRNL-VNLIALGMQSNQLHGTIPDVIGELKNLQILSLF 360
              S  + +  +G N++ G +   I NL   L  L +  N + G+IP  IG L +LQ L L 
Sbjct:   351 CSQ-LQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLDLG 409

Query:   361 GNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQL 420
              N L G +P SLG L++L  + L SN L G IP S+GN   L      + +  G++P  L
Sbjct:   410 ENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIPSSL 469

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 7.1e-59, P = 7.1e-59
 Identities = 148/417 (35%), Positives = 219/417 (52%)

Query:    17 SSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHG 76
             S+WNN+  LC W  V CG +H+RVT LDL   ++GGV+SP +GNLSFL Y++LS+N F G
Sbjct:    45 SAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGVISPSIGNLSFLIYLDLSNNSFGG 104

Query:    77 EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKL 136
              IPQE+GNL+RL+ L +  N   G IP +LS CS L +L + +N L   +P E+GSL KL
Sbjct:   105 TIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLLYLDLFSNNLGDGVPSELGSLRKL 164

Query:   137 QTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY 196
               L L  N+L G+ P F+ NL++L V+ +  N L G+IP  + +L  +V L +  N    
Sbjct:   165 LYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEGEIPDDIAMLSQMVSLTLTMN---- 220

Query:   197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI-PDXXXXXXXXXXXXXXGNQFEGKVSI 255
               +FSG  P     NL +L+ L +  N F G++ PD              GN   G +  
Sbjct:   221 --NFSGVFP-PAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPNIHELSLHGNFLTGAIPT 277

Query:   256 DFSSLKNLAVLNLERNNL------GIGTANDLGFVTFLTNCSSLKLPHSIANLSS--TMT 307
               +++  L +  + +N +        G   +L ++    N         +A L +    +
Sbjct:   278 TLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLGSYSFGDLAFLDALTNCS 337

Query:   308 HFY---IGGNQILGIIHFGIRNL-VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNF 363
             H +   +  N++ G +   I N+   L  L ++ N ++G+IP  IG L  LQ L L  N 
Sbjct:   338 HLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGSIPHDIGNLIGLQSLLLADNL 397

Query:   364 LHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQL 420
             L G +P+SLGNL  L  L L SN   G IP  +GN   L+    S+ +  G +P  L
Sbjct:   398 LTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLVKLYLSNNSFEGIVPPSL 454

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.0e-58, P = 1.0e-58
 Identities = 147/442 (33%), Positives = 221/442 (50%)

Query:    43 LDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTI 102
             L+L++   G  +   VG L  L+Y+N+S N   G IP  + N  RL  ++LS+N     +
Sbjct:   102 LNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGV 161

Query:   103 PTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQV 162
             P+ L   S+L  L ++ N L G  P  +G+L  LQ L   YN + G++PD V  L+ +  
Sbjct:   162 PSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVF 221

Query:   163 IYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAE 222
               I  NS  G  P  L  + +L  L++ +N      SFSG+L  D    LPNL++L +  
Sbjct:   222 FQIALNSFSGGFPPALYNISSLESLSLADN------SFSGNLRADFGYLLPNLRRLLLGT 275

Query:   223 NNFVGSIPDXXXXXXXXXXXXXXGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLG 282
             N F G+IP                N   G + + F  L+NL  L +  N+LG  +++ L 
Sbjct:   276 NQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLE 335

Query:   283 FVTFLTNCSSLK------------LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNL 330
             F+  + NC+ L+            LP SIANLS+T+T  ++G N I G I   I NLV+L
Sbjct:   336 FIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSL 395

Query:   331 IALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG 390
               L +++N L G +P   G+L NLQ++ L+ N + G IPS  GN+T+L  L L+SNS  G
Sbjct:   396 QELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHG 455

Query:   391 NIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTXXXXXXXXXXXXXXXXXXXXXXXKN 450
              IP S+G C+ L+        L G +PQ++L I +                       + 
Sbjct:   456 RIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEEVGKL-EL 514

Query:   451 LILLDISGNQFSGVIPVTLSIC 472
             L+ L  S N+ SG +P  +  C
Sbjct:   515 LVGLGASYNKLSGKMPQAIGGC 536

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 157/465 (33%), Positives = 231/465 (49%)

Query:    15 VTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGF 74
             V SSWNN+  LC W  VTCG +H+RVT L+L   ++GG++SP +GN+SFL  ++LSDN F
Sbjct:    43 VLSSWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGGIVSPSIGNVSFLISLDLSDNAF 102

Query:    75 HGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLL 134
              G IP+E+GNL+RLE L ++ NS  G IP  LS CS L +L + +N L   +P E+GSL 
Sbjct:   103 GGIIPREVGNLFRLEHLYMAFNSLEGGIPATLSNCSRLLNLDLYSNPLRQGVPSELGSLT 162

Query:   135 KLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF 194
             KL  L L  NNL G+LP  +GNL++L+ +    N++ G++P  L  L  +V L ++ N+F
Sbjct:   163 KLVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEGEVPDELARLSQMVGLGLSMNKF 222

Query:   195 WYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI-PDXXXXXXXXXXXXXXGNQFEGKV 253
             +      G  P   + NL  L+ L +  + F GS+ PD               N   G +
Sbjct:   223 F------GVFP-PAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPNIRELNLGENDLVGAI 275

Query:   254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLP---HSIANLS-----ST 305
                 S++  L    + +N +  G   + G V  L      + P   ++  +L      + 
Sbjct:   276 PTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLGSYTFGDLEFIDSLTN 335

Query:   306 MTHFY---IGGNQILGIIHFGIRNL-VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFG 361
              TH     +G  ++ G +   I N+   LI+L +  N   G+IP  IG L  LQ L L  
Sbjct:   336 CTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIGLQRLQLGK 395

Query:   362 NFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLL 421
             N L G +P+SLG L +L  L L SN + G IP  +GN   L     S+ +  G +P  L 
Sbjct:   396 NMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSFEGIVPPSL- 454

Query:   422 SITTXXXXXXXXXXXXXXXXXXXXXXXKNLILLDISGNQFSGVIP 466
                +                         L+ L + GN  SG +P
Sbjct:   455 GKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLSMEGNSLSGSLP 499

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 595 (214.5 bits), Expect = 4.3e-57, P = 4.3e-57
 Identities = 157/470 (33%), Positives = 239/470 (50%)

Query:    17 SSWNNTIN--LCQWMGVTCGHRHQR----VTELDLSNQRIGGVLSPYVGNLSFLRYINLS 70
             +SWN + +   C W+GV CG R +R    V +L L +  + G++SP +GNLSFLR ++L 
Sbjct:    52 ASWNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLLRSSNLSGIISPSLGNLSFLRELDLG 111

Query:    71 DNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEI 130
             DN   GEIP E+  L RL+ LELS+NS  G+IP  +  C++LT L +++N+L G IP+EI
Sbjct:   112 DNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAAIGACTKLTSLDLSHNQLRGMIPREI 171

Query:   131 GSLLK-LQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV 189
             G+ LK L  L LY N L+G++P  +GNL++LQ   +  N L G IP++LG L +L+ +N+
Sbjct:   172 GASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNRLSGAIPSSLGQLSSLLTMNL 231

Query:   190 NENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXG-NQ 248
              +N      + SG +P  I  NL +L+   + EN   G IP               G N+
Sbjct:   232 GQN------NLSGMIPNSIW-NLSSLRAFSVRENKLGGMIPTNAFKTLHLLEVIDMGTNR 284

Query:   249 FEGKVSIDFSSLKNLAVLNLERN------NLGIGTANDLGFVTFLTNCSSLKLPHS---I 299
             F GK+    ++  +L V+ +  N        G G   +L  +    N    +       I
Sbjct:   285 FHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQTREQDDWGFI 344

Query:   300 ANLS--STMTHFYIGGNQILGIIHFGIRNL-VNLIALGMQSNQLHGTIPDVIGELKNLQI 356
             ++L+  S +    +G N + G++     NL  +L  L ++ N++ G+IP  IG L  LQ 
Sbjct:   345 SDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGSIPKDIGNLIGLQH 404

Query:   357 LSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGAL 416
             L L  N   GS+PSSLG L  L  L    N+L G+IPL++GN   L          +G +
Sbjct:   405 LYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLLGTNKFSGWI 464

Query:   417 PQQLLSITTXXXXXXXXXXXXXXXXXXXXXXXKNLILLDISGNQFSGVIP 466
             P  L ++T                           I++++S N   G IP
Sbjct:   465 PYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIP 514

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 4.5e-54, P = 4.5e-54
 Identities = 152/472 (32%), Positives = 222/472 (47%)

Query:     3 RTGIPHQHDPSGVTSSWN--NTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGN 60
             + GI   +DP GV S W    ++  C W G+TC      V  + L  +++ GVLSP + N
Sbjct:    38 KNGI--SNDPLGVLSDWTIIGSLRHCNWTGITCDSTGH-VVSVSLLEKQLEGVLSPAIAN 94

Query:    61 LSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN 120
             L++L+ ++L+ N F G+IP EIG L  L +L L  N FSG+IP+ +     + +L + NN
Sbjct:    95 LTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNN 154

Query:   121 KLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGL 180
              L G +P+EI     L  +   YNNLTG++P+ +G+L  LQ+    GN L G IP ++G 
Sbjct:   155 LLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGT 214

Query:   181 LRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXX 240
             L NL  L+++ NQ       +G +P D   NL NL+ L + EN   G IP          
Sbjct:   215 LANLTDLDLSGNQL------TGKIPRDF-GNLLNLQSLVLTENLLEGDIPAEIGNCSSLV 267

Query:   241 XXXXXGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIA 300
                   NQ  GK+  +  +L  L  L + +N L     + L  +T LT+   L   H + 
Sbjct:   268 QLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLG-LSENHLVG 326

Query:   301 NLSS------TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNL 354
              +S       ++    +  N   G     I NL NL  L +  N + G +P  +G L NL
Sbjct:   327 PISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNL 386

Query:   355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTG 414
             + LS   N L G IPSS+ N T L  L+LS N + G IP   G   NL          TG
Sbjct:   387 RNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGR-MNLTFISIGRNHFTG 445

Query:   415 ALPQQLLSITTXXXXXXXXXXXXXXXXXXXXXXXKNLILLDISGNQFSGVIP 466
              +P  + + +                        K L +L +S N  +G IP
Sbjct:   446 EIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQK-LRILQVSYNSLTGPIP 496

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 8.3e-54, P = 8.3e-54
 Identities = 150/469 (31%), Positives = 224/469 (47%)

Query:    18 SWNNTINL-CQWMGVTCGHRHQR-------VTELDLSNQRIGGVLSPYVGNLSFLRYINL 69
             +WN      C W+GV C  +          VT LDLS+  + G++SP +G L  L Y+NL
Sbjct:    57 NWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGGLVNLVYLNL 116

Query:    70 SDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKE 129
             + N   G+IP+EIGN  +LE + L+NN F G+IP  +++ S+L    + NNKL G +P+E
Sbjct:   117 AYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEE 176

Query:   130 IGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV 189
             IG L  L+ L  Y NNLTG LP  +GNL+ L       N   G IPT +G   NL  L +
Sbjct:   177 IGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGL 236

Query:   190 NENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQF 249
              +N F      SG LP +I + L  L+++ + +N F G IP               GN  
Sbjct:   237 AQN-F-----ISGELPKEIGM-LVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSL 289

Query:   250 EGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVT------FLTNCSSLKLPHSIANLS 303
              G +  +  ++K+L  L L +N L      +LG ++      F  N  S ++P  ++ +S
Sbjct:   290 VGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKIS 349

Query:   304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNF 363
               +   Y+  N++ GII   +  L NL  L +  N L G IP     L +++ L LF N 
Sbjct:   350 E-LRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNS 408

Query:   364 LHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSI 423
             L G IP  LG  + L  ++ S N L G IP  +    NLI  +     + G +P  +L  
Sbjct:   409 LSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRC 468

Query:   424 TTXXXXXXXXXXXXXXXXXXXXXXXKNLILLDISGNQFSGVIPVTLSIC 472
              +                        NL  +++  N+FSG +P  +  C
Sbjct:   469 KSLLQLRVVGNRLTGQFPTELCKLV-NLSAIELDQNRFSGPLPPEIGTC 516

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 4.3e-52, P = 4.3e-52
 Identities = 156/474 (32%), Positives = 230/474 (48%)

Query:    13 SGVTSSW-----NNTINLC-QWMGVTCGHRHQRVTELDLSNQRIGGVLS--PYVGNLSFL 64
             S   SSW      NT   C  W GV+C  R   + EL+L+N  I G     P++ +LS L
Sbjct:    47 SSKLSSWVHDANTNTSFSCTSWYGVSCNSRGS-IEELNLTNTGIEGTFQDFPFI-SLSNL 104

Query:    65 RYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEG 124
              Y++LS N   G IP + GNL +L   +LS N  +G I  +L     LT L +  N L  
Sbjct:   105 AYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTS 164

Query:   125 QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL 184
              IP E+G++  +  LAL  N LTG +P  +GNL  L V+Y+  N L G IP  LG + ++
Sbjct:   165 VIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESM 224

Query:   185 VYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXX 244
               L +++N+       +GS+P   L NL NL  L + EN   G IP              
Sbjct:   225 TDLALSQNKL------TGSIP-STLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLAL 277

Query:   245 XGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNC--SSLKL----PHS 298
               N+  G +     +LKNL +L+L +N L  G    LG +  + +   S+ KL    P S
Sbjct:   278 SQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSS 337

Query:   299 IANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILS 358
             + NL + +T  Y+  N + G+I   + N+ ++I L + +N+L G+IP   G LKNL  L 
Sbjct:   338 LGNLKN-LTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLY 396

Query:   359 LFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQ 418
             L+ N+L G IP  LGN+  + NL+LS N L G++P S GN   L         L+GA+P 
Sbjct:   397 LYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPP 456

Query:   419 QLLSITTXXXXXXXXXXXXXXXXXXXXXXXKNLILLDISGNQFSGVIPVTLSIC 472
              + + ++                       + L  + +  N   G IP +L  C
Sbjct:   457 GVAN-SSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDC 509

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00080284 hypothetical protein (1032 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	472
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-65
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-61
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-54
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-25
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	8e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  227 bits (581), Expect = 1e-65
 Identities = 153/460 (33%), Positives = 239/460 (51%), Gaps = 35/460 (7%)

Query: 10  HDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINL 69
           +DP    S+WN++ ++C W G+TC +   RV  +DLS + I G +S  +  L +++ INL
Sbjct: 42  NDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINL 100

Query: 70  SDNGFHGEIPQEIGNL-YRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPK 128
           S+N   G IP +I      L  L LSNN+F+G+IP        L  L ++NN L G+IP 
Sbjct: 101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPN 158

Query: 129 EIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL--VY 186
           +IGS   L+ L L  N L G++P+ + NL++L+ + +  N L G+IP  LG +++L  +Y
Sbjct: 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218

Query: 187 LNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAG 246
           L  N        + SG +P++I   L +L  L +  NN  G IP SL N  NL+ L L  
Sbjct: 219 LGYN--------NLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269

Query: 247 NQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTM 306
           N+  G +     SL+ L  L+L  N+L                  S ++P  +  L   +
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSL------------------SGEIPELVIQL-QNL 310

Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366
              ++  N   G I   + +L  L  L + SN+  G IP  +G+  NL +L L  N L G
Sbjct: 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370

Query: 367 SIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTL 426
            IP  L +   L  L L SNSL+G IP S+G C++L        + +G LP +   +  L
Sbjct: 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-PL 429

Query: 427 SLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIP 466
             +LD+S+N L G +  +  ++ +L +L ++ N+F G +P
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  215 bits (550), Expect = 1e-61
 Identities = 148/433 (34%), Positives = 229/433 (52%), Gaps = 16/433 (3%)

Query: 43  LDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTI 102
           LDLSN  + G +   +G+ S L+ ++L  N   G+IP  + NL  LE L L++N   G I
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 103 PTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQV 162
           P  L +   L  + +  N L G+IP EIG L  L  L L YNNLTG +P  +GNL  LQ 
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264

Query: 163 IYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAE 222
           +++  N L G IP ++  L+ L+ L++++N      S SG +P ++++ L NL+ L +  
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDN------SLSGEIP-ELVIQLQNLEILHLFS 317

Query: 223 NNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNL------GIG 276
           NNF G IP +L++   L++L+L  N+F G++  +     NL VL+L  NNL      G+ 
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377

Query: 277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQ 336
           ++ +L  +   +N    ++P S+    S +    +  N   G +      L  +  L + 
Sbjct: 378 SSGNLFKLILFSNSLEGEIPKSLGACRS-LRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436

Query: 337 SNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSV 396
           +N L G I     ++ +LQ+LSL  N   G +P S G+  +L NL+LS N   G +P  +
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKL 495

Query: 397 GNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDI 456
           G+   L+    S   L+G +P +L S   L + LDLSHN L+G +      +  L  LD+
Sbjct: 496 GSLSELMQLKLSENKLSGEIPDELSSCKKL-VSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

Query: 457 SGNQFSGVIPVTL 469
           S NQ SG IP  L
Sbjct: 555 SQNQLSGEIPKNL 567

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  195 bits (497), Expect = 2e-54
 Identities = 143/424 (33%), Positives = 219/424 (51%), Gaps = 31/424 (7%)

Query: 46  SNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTN 105
           SNQ +G +    +G +  L++I L  N   GEIP EIG L  L  L+L  N+ +G IP++
Sbjct: 197 SNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255

Query: 106 LSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYI 165
           L     L +L +  NKL G IP  I SL KL +L L  N+L+G++P+ V  L  L+++++
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Query: 166 RGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNF 225
             N+  GKIP  L  L  L  L     Q W  + FSG +P + L    NL  L ++ NN 
Sbjct: 316 FSNNFTGKIPVALTSLPRLQVL-----QLW-SNKFSGEIPKN-LGKHNNLTVLDLSTNNL 368

Query: 226 VGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVT 285
            G IP+ L ++ NL  L L  N  EG++     + ++L  + L+ N+             
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF------------ 416

Query: 286 FLTNCSSLKLPHSIANLSSTMTHFY-IGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTI 344
                 S +LP     L   + +F  I  N + G I+    ++ +L  L +  N+  G +
Sbjct: 417 ------SGELPSEFTKLP--LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL 468

Query: 345 PDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIG 404
           PD  G  K L+ L L  N   G++P  LG+L++L  L+LS N L G IP  + +C+ L+ 
Sbjct: 469 PDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527

Query: 405 FDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV 464
            D SH  L+G +P     +  LS  LDLS N L+G +   +GN+++L+ ++IS N   G 
Sbjct: 528 LDLSHNQLSGQIPASFSEMPVLSQ-LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586

Query: 465 IPVT 468
           +P T
Sbjct: 587 LPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  136 bits (345), Expect = 2e-34
 Identities = 107/356 (30%), Positives = 170/356 (47%), Gaps = 51/356 (14%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS 97
           Q++  LDLS+  + G +   V  L  L  ++L  N F G+IP  + +L RL+ L+L +N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 98  FSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNL 157
           FSG IP NL + + LT L ++ N L G+IP+ + S   L  L L+ N+L G++P  +G  
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK 217
            +L+ + ++ NS  G++P+    L  + +L+++ N      +  G +      ++P+L+ 
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN------NLQGRIN-SRKWDMPSLQM 456

Query: 218 LCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGT 277
           L +A N F G +PDS   +  LE L+L+ NQF G V     SL  L  L L         
Sbjct: 457 LSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS-------- 507

Query: 278 ANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQS 337
                                               N++ G I   + +   L++L +  
Sbjct: 508 -----------------------------------ENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 338 NQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIP 393
           NQL G IP    E+  L  L L  N L G IP +LGN+  L  + +S N L G++P
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  108 bits (271), Expect = 6e-25
 Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 7/169 (4%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS 97
             V  LD+SN  + G ++    ++  L+ ++L+ N F G +P   G+  RLE L+LS N 
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQ 486

Query: 98  FSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNL 157
           FSG +P  L   SEL  L+++ NKL G+IP E+ S  KL +L L +N L+GQ+P     +
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546

Query: 158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF 206
             L  + +  N L G+IP  LG + +LV +N++ N         GSLP 
Sbjct: 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH------LHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.5 bits (191), Expect = 4e-15
 Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 12/129 (9%)

Query: 6   IPHQHDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLR 65
           +P QH  SG    +++T    +W           +  L L NQ + G +   +  L  L+
Sbjct: 398 VPQQHPWSGADCQFDSTKG--KWF----------IDGLGLDNQGLRGFIPNDISKLRHLQ 445

Query: 66  YINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQ 125
            INLS N   G IP  +G++  LE L+LS NSF+G+IP +L + + L  L +  N L G+
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 126 IPKEIGSLL 134
           +P  +G  L
Sbjct: 506 VPAALGGRL 514

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 76.4 bits (188), Expect = 1e-14
 Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 1/133 (0%)

Query: 36  RHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSN 95
             +R+  LDLS  +  G +   +G+LS L  + LS+N   GEIP E+ +  +L  L+LS+
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 96  NSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVG 155
           N  SG IP + S    L+ L ++ N+L G+IPK +G++  L  + + +N+L G LP   G
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP-STG 591

Query: 156 NLSALQVIYIRGN 168
              A+    + GN
Sbjct: 592 AFLAINASAVAGN 604

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 32/89 (35%), Positives = 54/89 (60%)

Query: 91  LELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQL 150
           L L N    G IP ++S+   L  + ++ N + G IP  +GS+  L+ L L YN+  G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 151 PDFVGNLSALQVIYIRGNSLGGKIPTTLG 179
           P+ +G L++L+++ + GNSL G++P  LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 36/89 (40%), Positives = 57/89 (64%)

Query: 332 ALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGN 391
            LG+ +  L G IP+ I +L++LQ ++L GN + G+IP SLG++T L  L+LS NS  G+
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 392 IPLSVGNCQNLIGFDASHITLTGALPQQL 420
           IP S+G   +L   + +  +L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 5/101 (4%)

Query: 302 LSSTMTHFYIGG----NQIL-GIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQI 356
             ST   ++I G    NQ L G I   I  L +L ++ +  N + G IP  +G + +L++
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Query: 357 LSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVG 397
           L L  N  +GSIP SLG LT L  L L+ NSL G +P ++G
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 6/87 (6%)

Query: 119 NNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTL 178
           N  L G IP +I  L  LQ++ L  N++ G +P  +G++++L+V+ +  NS  G IP +L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 179 GLLRNLVYLNVNENQFWYVSSFSGSLP 205
           G L +L  LN+N N      S SG +P
Sbjct: 487 GQLTSLRILNLNGN------SLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 25/113 (22%)

Query: 357 LSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGAL 416
           L L    L G IP+ +  L  L ++ LS NS++GNIP S+G+                  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS------------------ 464

Query: 417 PQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTL 469
                 IT+L + LDLS+N  NGS+   +G L +L +L+++GN  SG +P  L
Sbjct: 465 ------ITSLEV-LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.6 bits (131), Expect = 5e-08
 Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 13/246 (5%)

Query: 229 IPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG--IGTANDLGFVTF 286
           +P SLS   +L+LL  +G            +L  L  L+L  N L   I    +L  +T 
Sbjct: 62  LPSSLSRLLSLDLLSPSGISSLDGSEN-LLNLLPLPSLDLNLNRLRSNISELLELTNLTS 120

Query: 287 LTNCSS--LKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTI 344
           L   ++    +P  I  L S +    +  N+I  +    +RNL NL  L +  N L   +
Sbjct: 121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFNDLS-DL 178

Query: 345 PDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIG 404
           P ++  L NL  L L GN +   +P  +  L+ L  L+LS+NS+   +  S+ N +NL G
Sbjct: 179 PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSG 236

Query: 405 FDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV 464
            + S+  L      + +   +    LDLS+N +  S +  +G+L NL  LD+SGN  S  
Sbjct: 237 LELSNNKLE--DLPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNA 292

Query: 465 IPVTLS 470
           +P+   
Sbjct: 293 LPLIAL 298

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 7/95 (7%)

Query: 139 LALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVS 198
           L L    L G +P+ +  L  LQ I + GNS+ G IP +LG + +L  L+++ N      
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN------ 476

Query: 199 SFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSL 233
           SF+GS+P + L  L +L+ L +  N+  G +P +L
Sbjct: 477 SFNGSIP-ESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 43/143 (30%)

Query: 231 DSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNC 290
           DS      ++ L L      G +  D S L++L  +NL                      
Sbjct: 412 DSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLS--------------------- 450

Query: 291 SSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGE 350
                                 GN I G I   + ++ +L  L +  N  +G+IP+ +G+
Sbjct: 451 ----------------------GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 351 LKNLQILSLFGNFLHGSIPSSLG 373
           L +L+IL+L GN L G +P++LG
Sbjct: 489 LTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 202 GSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLK 261
           G +P DI   L +L+ + ++ N+  G+IP SL + ++LE+L+L+ N F G +      L 
Sbjct: 432 GFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 262 NLAVLNLERNNL 273
           +L +LNL  N+L
Sbjct: 491 SLRILNLNGNSL 502

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 37/220 (16%)

Query: 54  LSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELT 113
            S  + NL  L  ++L+ N     I  E+  L  L  L+L NN+ +   P      S L 
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 114 HLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGK 173
            L +++NK+E  +P  + +L  L+ L L +N+L+  LP  + NLS L  + + GN +   
Sbjct: 144 ELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-D 200

Query: 174 IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSL 233
           +P  + LL  L  L+++                                NN +  +  SL
Sbjct: 201 LPPEIELLSALEELDLS--------------------------------NNSIIELLSSL 228

Query: 234 SNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNL 273
           SN  NL  LEL+ N+ E        +L NL  L+L  N +
Sbjct: 229 SNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQI 267

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 9  QHDPSGVTSSWN-NTINLCQWMGVTC 33
            DPSG  SSWN ++ + C W GVTC
Sbjct: 16 NGDPSGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 24/154 (15%)

Query: 64  LRYINLSDNGFHGEIP-------QEIGNLYRLEKLELSNNSFSGTIPT---NLSRCSELT 113
           L+ + LS N   G IP       Q +     L++L+LS+N+          +L R S L 
Sbjct: 53  LKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQ 111

Query: 114 HLRVANNKLEGQIPKEIGSLLK-----LQTLALYYNNLTGQLPDFVGNL----SALQVIY 164
            L++ NN L  +  + +   LK     L+ L L  N L G   + +         L+ + 
Sbjct: 112 ELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171

Query: 165 IRGNSLGGK-IPTTLGLLR---NLVYLNVNENQF 194
           +  N +G   I      L+   NL  L++N N  
Sbjct: 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 53/209 (25%), Positives = 89/209 (42%), Gaps = 14/209 (6%)

Query: 229 IPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLER----NNLGIGTANDLGFV 284
           IPD LS A+NLE L+L+      ++      L  L  L++ R      L  G      + 
Sbjct: 650 IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708

Query: 285 TFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGI-IHFGIRNLVNLIALGMQSNQLHGT 343
             L+ CS LK   S  ++S+ ++   +    I     +  + NL  LI   M+S +L   
Sbjct: 709 LNLSGCSRLK---SFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765

Query: 344 IPDVIGELK----NLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC 399
           +  +   +     +L  L L        +PSS+ NL KL +LE+ +      +P  + N 
Sbjct: 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NL 824

Query: 400 QNLIGFDASHITLTGALPQQLLSITTLSL 428
           ++L   D S  +     P    +I+ L+L
Sbjct: 825 ESLESLDLSGCSRLRTFPDISTNISDLNL 853

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	472
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.54
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.25
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.02
PLN03150	623	hypothetical protein; Provisional	99.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
PLN03150	623	hypothetical protein; Provisional	98.91
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.9
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.89
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.88
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.71
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.57
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.55
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.5
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.31
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.27
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.27
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.25
KOG4341	483	consensus F-box protein containing LRR [General fu	98.22
KOG4341	483	consensus F-box protein containing LRR [General fu	98.21
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.13
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.9
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.83
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.77
PRK15386	426	type III secretion protein GogB; Provisional	97.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.73
PRK15386	426	type III secretion protein GogB; Provisional	97.7
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.7
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.66
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.26
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.18
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.0
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.92
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.53
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.6
KOG4308	478	consensus LRR-containing protein [Function unknown	94.48
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	94.36
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.26
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.21
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.96
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.81
KOG4308	478	consensus LRR-containing protein [Function unknown	93.03
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.43
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.46
smart00370	26	LRR Leucine-rich repeats, outliers.	88.46
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.62

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.7e-46  Score=402.17  Aligned_cols=446  Identities=33%  Similarity=0.530  Sum_probs=337.8

Q ss_pred             CCCCCCCCCCCCCCCcccccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchh-hhcCCCC
Q 040195           10 HDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQE-IGNLYRL   88 (472)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~-~~~l~~L   88 (472)
                      .+|.+.+++|+...+||.|.|+.|.. ..+++.|+++++.+.+..+..+..+++|++|++++|.+....|.. +..+.+|
T Consensus        42 ~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L  120 (968)
T PLN00113         42 NDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL  120 (968)
T ss_pred             CCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCC
Confidence            46778899999888999999999974 368999999999998888888999999999999999987666655 4589999


Q ss_pred             CEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCC
Q 040195           89 EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGN  168 (472)
Q Consensus        89 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~  168 (472)
                      ++|++++|.+.+..|.  ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus       121 ~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  198 (968)
T PLN00113        121 RYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN  198 (968)
T ss_pred             CEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence            9999999998866664  46789999999999998788888999999999999999988888888999999999999999


Q ss_pred             ccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCc
Q 040195          169 SLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ  248 (472)
Q Consensus       169 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~  248 (472)
                      .+.+..|..+..+++|+.|++++|.+.      +.+| ..+..+++|++|++++|.+.+..|..++++++|+.|++++|.
T Consensus       199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~------~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        199 QLVGQIPRELGQMKSLKWIYLGYNNLS------GEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK  271 (968)
T ss_pred             CCcCcCChHHcCcCCccEEECcCCccC------CcCC-hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence            998888888999999999999998863      2233 345688899999999999888888889999999999999998


Q ss_pred             ccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCc---------CCchhhhccccccEEEeecccccCc
Q 040195          249 FEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLK---------LPHSIANLSSTMTHFYIGGNQILGI  319 (472)
Q Consensus       249 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~l~~l~l~~~~~~~~  319 (472)
                      +.+..+..+..+++|++|++++|.+.......+.   .+.+++.+.         .|..+.. .++++.|++++|.+...
T Consensus       272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~  347 (968)
T PLN00113        272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI---QLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGE  347 (968)
T ss_pred             eeccCchhHhhccCcCEEECcCCeeccCCChhHc---CCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCcCc
Confidence            8877777888899999999999887532211111   111111111         1222222 23566666666666655


Q ss_pred             ccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCC
Q 040195          320 IHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC  399 (472)
Q Consensus       320 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  399 (472)
                      .+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.+|..+..+
T Consensus       348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l  427 (968)
T PLN00113        348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL  427 (968)
T ss_pred             CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence            56666666666666666666666666666666666666666666666666666666777777777777766666666667


Q ss_pred             CCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCcccc
Q 040195          400 QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSI  471 (472)
Q Consensus       400 ~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~  471 (472)
                      +.|+.|++++|.+.+.++..+..+++|+ .|++++|++.+..|..+ ..++|+.|++++|++++.+|..|.+
T Consensus       428 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~  497 (968)
T PLN00113        428 PLVYFLDISNNNLQGRINSRKWDMPSLQ-MLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS  497 (968)
T ss_pred             CCCCEEECcCCcccCccChhhccCCCCc-EEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh
Confidence            7777777777777666666666666666 77777777766555543 3467777777777777777766543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.4e-44  Score=385.56  Aligned_cols=418  Identities=34%  Similarity=0.577  Sum_probs=231.0

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV  117 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l  117 (472)
                      +++++|++++|.+.+..+..+..+++|++|++++|.+....|..+.++++|++|++++|.+.+..|..+.++++|++|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            44455555555544444444555555555555555554445555555555555555555555445555555555555555


Q ss_pred             ccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccc
Q 040195          118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV  197 (472)
Q Consensus       118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  197 (472)
                      ++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.  
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--  297 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS--  297 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec--
Confidence            555555445555555555555555555555455555555555555555555555445555555555555555555431  


Q ss_pred             cccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCC
Q 040195          198 SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGT  277 (472)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  277 (472)
                          +.+ ...+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....
T Consensus       298 ----~~~-p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~  372 (968)
T PLN00113        298 ----GEI-PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI  372 (968)
T ss_pred             ----cCC-ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence                111 123345556666666666555555555555666666666666555555555555566666666665543211


Q ss_pred             CCCcchhhhhcccCCC---------cCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhh
Q 040195          278 ANDLGFVTFLTNCSSL---------KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI  348 (472)
Q Consensus       278 ~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  348 (472)
                      ...+..   ..++..+         .+|..+.. .++++.+++++|.++...+..+..+++|+.+++++|.+.+.++..+
T Consensus       373 p~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~-~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~  448 (968)
T PLN00113        373 PEGLCS---SGNLFKLILFSNSLEGEIPKSLGA-CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK  448 (968)
T ss_pred             ChhHhC---cCCCCEEECcCCEecccCCHHHhC-CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence            111100   0001100         01111111 2245555555555544444444444444444444444444333333


Q ss_pred             cCC-----------------------CCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceE
Q 040195          349 GEL-----------------------KNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGF  405 (472)
Q Consensus       349 ~~~-----------------------~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  405 (472)
                      ..+                       ++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|
T Consensus       449 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  528 (968)
T PLN00113        449 WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL  528 (968)
T ss_pred             ccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence            333                       455556666666655566666666777777777777776677777777777777


Q ss_pred             eecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCC
Q 040195          406 DASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPV  467 (472)
Q Consensus       406 ~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~  467 (472)
                      ++++|.+++.+|..+..+++|+ .|++++|++.+.+|..+.++++|+.|++++|++++.+|+
T Consensus       529 ~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        529 DLSHNQLSGQIPASFSEMPVLS-QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             ECCCCcccccCChhHhCcccCC-EEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            7777777766777777777777 777777777777777777777777777777777777764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-38  Score=288.98  Aligned_cols=399  Identities=19%  Similarity=0.198  Sum_probs=321.5

Q ss_pred             eeCCCCC-ceEEEECCCCccCcccCccccCC--CCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCC
Q 040195           32 TCGHRHQ-RVTELDLSNQRIGGVLSPYVGNL--SFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSR  108 (472)
Q Consensus        32 ~~~~~~~-~l~~L~l~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~  108 (472)
                      .|.+.++ +.+-+|.++..+.......+..+  ..-+.|++++|.+..+.+..|.++++|+++++..|.++ .+|+....
T Consensus        45 ~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~  123 (873)
T KOG4194|consen   45 ECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE  123 (873)
T ss_pred             cCCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc
Confidence            3433333 34568888888766544444433  34466999999999999999999999999999999988 77887777


Q ss_pred             CCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEE
Q 040195          109 CSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLN  188 (472)
Q Consensus       109 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  188 (472)
                      ..+|+.|++.+|.+.....+.++.++.|++||++.|.|..+....|..-.++++|++++|.|+......|..+.+|..|.
T Consensus       124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk  203 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK  203 (873)
T ss_pred             ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence            78899999999999877788899999999999999999866666677778899999999999988888999999999999


Q ss_pred             ccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEc
Q 040195          189 VNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNL  268 (472)
Q Consensus       189 l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  268 (472)
                      ++.|++       ..+|...|..+++|+.|+|..|++...-.-.|+++++|+.|.+..|.+..-....|-.+.++++|++
T Consensus       204 LsrNri-------ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L  276 (873)
T KOG4194|consen  204 LSRNRI-------TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL  276 (873)
T ss_pred             cccCcc-------cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence            999998       7778888988999999999999987544567899999999999999998777788999999999999


Q ss_pred             CCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhh
Q 040195          269 ERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI  348 (472)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  348 (472)
                      +.|++......                  +++. .+.|+.|+++.|.|..+....+.-+++|++|+|++|.|+...+..|
T Consensus       277 ~~N~l~~vn~g------------------~lfg-Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf  337 (873)
T KOG4194|consen  277 ETNRLQAVNEG------------------WLFG-LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF  337 (873)
T ss_pred             ccchhhhhhcc------------------cccc-cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence            99987632221                  1222 2378888888888888888888888888888888888887777788


Q ss_pred             cCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccccc---CCcCccCCCCCceEeecCCcccccCChhhhhhcc
Q 040195          349 GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGN---IPLSVGNCQNLIGFDASHITLTGALPQQLLSITT  425 (472)
Q Consensus       349 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~  425 (472)
                      ..+..|++|.|+.|.+....-.+|..+++|++|+|++|.+...   ....+..+++|+.|.+.+|++...--..|..+..
T Consensus       338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~  417 (873)
T KOG4194|consen  338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEA  417 (873)
T ss_pred             HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcc
Confidence            8888888888888888755555777888888888888887643   3445667888888888888887323367778888


Q ss_pred             cceEEEcCCCcccccccccccCCCCCceEeccCC
Q 040195          426 LSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN  459 (472)
Q Consensus       426 l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n  459 (472)
                      |+ .|||.+|.|-.+.+.+|.++ .|++|.+..-
T Consensus       418 LE-~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  418 LE-HLDLGDNAIASIQPNAFEPM-ELKELVMNSS  449 (873)
T ss_pred             cc-eecCCCCcceeecccccccc-hhhhhhhccc
Confidence            88 88888888887888888887 8888776553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1e-37  Score=287.65  Aligned_cols=380  Identities=21%  Similarity=0.211  Sum_probs=326.8

Q ss_pred             ccEEeccCCcCccCcchhhhcC--CCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEc
Q 040195           64 LRYINLSDNGFHGEIPQEIGNL--YRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLAL  141 (472)
Q Consensus        64 L~~L~L~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  141 (472)
                      -+.|+.++..+....-..+...  +.-+.|++++|.+....+..|.++++|+.+.+.+|.++ .+|.......+|++|++
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            3567777777765443444443  33466999999999888888999999999999999998 67776666678999999


Q ss_pred             cccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcc
Q 040195          142 YYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIA  221 (472)
Q Consensus       142 ~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  221 (472)
                      .+|.|+++-...+..++.|+.|+++.|.++......|..-.++++|++++|+|.++       ..+.|..+.+|..|.|+
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l-------~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL-------ETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc-------ccccccccchheeeecc
Confidence            99999988888899999999999999999866666777778999999999999555       34556677899999999


Q ss_pred             cccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhh
Q 040195          222 ENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIAN  301 (472)
Q Consensus       222 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  301 (472)
                      .|.++...+..|.++++|+.|++..|++....-..|.++++|+.|.+..|.+.                   ++....+.
T Consensus       206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-------------------kL~DG~Fy  266 (873)
T KOG4194|consen  206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-------------------KLDDGAFY  266 (873)
T ss_pred             cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-------------------cccCccee
Confidence            99999888888999999999999999998655567899999999999999886                   34445555


Q ss_pred             ccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCee
Q 040195          302 LSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANL  381 (472)
Q Consensus       302 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L  381 (472)
                      ...+++.|++..|.++.....++.+++.|+.|++|+|.|...-++.-..+++|++|+|+.|+++...+.+|..+..|++|
T Consensus       267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL  346 (873)
T ss_pred             eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence            56699999999999999989999999999999999999998777777788999999999999998888899999999999


Q ss_pred             eccCCcccccCCcCccCCCCCceEeecCCcccccC---ChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccC
Q 040195          382 ELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGAL---PQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISG  458 (472)
Q Consensus       382 ~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~---~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~  458 (472)
                      +|+.|.+...-..+|..+++|++||+++|.+...+   ...|..+++|+ .|.+.||++..+.-.+|.++.+|+.|||.+
T Consensus       347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr-kL~l~gNqlk~I~krAfsgl~~LE~LdL~~  425 (873)
T KOG4194|consen  347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR-KLRLTGNQLKSIPKRAFSGLEALEHLDLGD  425 (873)
T ss_pred             cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh-heeecCceeeecchhhhccCcccceecCCC
Confidence            99999999777778889999999999999987333   35677899999 999999999977779999999999999999


Q ss_pred             CeeccccCCcccc
Q 040195          459 NQFSGVIPVTLSI  471 (472)
Q Consensus       459 n~~~~~~p~~~~~  471 (472)
                      |.+...-|..|..
T Consensus       426 NaiaSIq~nAFe~  438 (873)
T KOG4194|consen  426 NAIASIQPNAFEP  438 (873)
T ss_pred             Ccceeeccccccc
Confidence            9999888988864

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.6e-33  Score=262.19  Aligned_cols=363  Identities=26%  Similarity=0.365  Sum_probs=186.0

Q ss_pred             CceEEEECCCCccC-cccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195           38 QRVTELDLSNQRIG-GVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR  116 (472)
Q Consensus        38 ~~l~~L~l~~~~~~-~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~  116 (472)
                      |=|+-+|+++|.++ +-.++....|+.++.|.|....+. ..|+.++.+.+|++|.+++|++. ..-..+..++.|+.+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI   84 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence            44556666666665 334555566666666666665554 45555666666666666666554 2222344555566665


Q ss_pred             cccCcCc-ccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195          117 VANNKLE-GQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW  195 (472)
Q Consensus       117 l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  195 (472)
                      +.+|++. +-+|..+.++..|..|++++|.++ ..|..+....++-.|++++|+|.....+.+.++..|-.|+++.|++ 
T Consensus        85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-  162 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-  162 (1255)
T ss_pred             hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-
Confidence            5555553 123444555555666666665555 4555555555555555555555433333444555555555555554 


Q ss_pred             cccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccc-ccccccccccCCCCeEEcCCCcCC
Q 040195          196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFE-GKVSIDFSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~  274 (472)
                            ..+|+.. ..+.+|++|.|++|++...-...+..+.+|+.|++++.+=+ ...+.++..+.+|+.++++.|.+ 
T Consensus       163 ------e~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-  234 (1255)
T KOG0444|consen  163 ------EMLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-  234 (1255)
T ss_pred             ------hhcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-
Confidence                  3333322 23445555555555543221122223344444555444221 12333444455555555555544 


Q ss_pred             CCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCC
Q 040195          275 IGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNL  354 (472)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L  354 (472)
                                                                .. .|..+..+++|+.|+||+|.|+ ......+.-.+|
T Consensus       235 ------------------------------------------p~-vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l  270 (1255)
T KOG0444|consen  235 ------------------------------------------PI-VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL  270 (1255)
T ss_pred             ------------------------------------------Cc-chHHHhhhhhhheeccCcCcee-eeeccHHHHhhh
Confidence                                                      32 2334445555555555555555 222222333455


Q ss_pred             cEEEccCCcCccccccchhcccccCeeeccCCcccc-cCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcC
Q 040195          355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG-NIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLS  433 (472)
Q Consensus       355 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls  433 (472)
                      ++|+++.|+++ .+|+++.++++|+.|...+|+++- -+|..++.+..|+.+..++|.+. -.|..++.|..|+ .|.|+
T Consensus       271 EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~-kL~L~  347 (1255)
T KOG0444|consen  271 ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ-KLKLD  347 (1255)
T ss_pred             hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH-Hhccc
Confidence            55555555555 455555555555555555555442 24555555555555555555554 4555555555555 55555


Q ss_pred             CCcccccccccccCCCCCceEeccCCe
Q 040195          434 HNLLNGSLLLQVGNLKNLILLDISGNQ  460 (472)
Q Consensus       434 ~n~l~~~~~~~l~~~~~L~~L~L~~n~  460 (472)
                      .|++. .+|+++.-++.|+.||+.+|+
T Consensus       348 ~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  348 HNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             cccee-echhhhhhcCCcceeeccCCc
Confidence            55554 455555555555555555554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=3.3e-34  Score=253.38  Aligned_cols=405  Identities=27%  Similarity=0.403  Sum_probs=269.7

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCC-----------------
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG-----------------  100 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-----------------  100 (472)
                      ..+.+++++++..... +.+++.+..++.++.++|.+. ..|..+..+.+|..++++.|.+..                 
T Consensus        68 ~~l~vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLSQL-PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             cceeEEEeccchhhhC-CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence            4567888888876443 334555555555666665554 445555555555555555555441                 


Q ss_pred             -----CCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccc
Q 040195          101 -----TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIP  175 (472)
Q Consensus       101 -----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  175 (472)
                           ..|..+..+.++..+++.+++++ ..|...-+++.|+++++.+|.+. .+|..++.+.+|+.|++..|++. ..|
T Consensus       146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP  222 (565)
T KOG0472|consen  146 NNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP  222 (565)
T ss_pred             ccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC
Confidence                 33344444445555555555555 23333333677788887777775 77777888888888888888875 344


Q ss_pred             cccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccc
Q 040195          176 TTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSI  255 (472)
Q Consensus       176 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  255 (472)
                       .|..+..|+.+.++.|.+       ..+|.+....++++..|++..|+++ ..|..+.-+.+|++|++++|.++ ..+.
T Consensus       223 -ef~gcs~L~Elh~g~N~i-------~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~  292 (565)
T KOG0472|consen  223 -EFPGCSLLKELHVGENQI-------EMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPY  292 (565)
T ss_pred             -CCCccHHHHHHHhcccHH-------HhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCc
Confidence             677788888888888876       6677777888999999999999998 56778888999999999999997 5667


Q ss_pred             cccccCCCCeEEcCCCcCCCC--------CCCCcchhhhhcccCCCc--------------CCchhhhccccccEEEeec
Q 040195          256 DFSSLKNLAVLNLERNNLGIG--------TANDLGFVTFLTNCSSLK--------------LPHSIANLSSTMTHFYIGG  313 (472)
Q Consensus       256 ~l~~l~~L~~L~l~~~~~~~~--------~~~~~~~~~~~~~~~~l~--------------~~~~~~~~~~~l~~l~l~~  313 (472)
                      .++++ .|+.|-+.+|++...        ..+.+.+......+..+.              .+..........+.|++++
T Consensus       293 sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~  371 (565)
T KOG0472|consen  293 SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD  371 (565)
T ss_pred             ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc
Confidence            78888 999999999986311        111111111111111111              0001111122455666666


Q ss_pred             ccccCcccccccCc--cCcceEeccccccc-----------------------cCcchhhcCCCCCcEEEccCCcCcccc
Q 040195          314 NQILGIIHFGIRNL--VNLIALGMQSNQLH-----------------------GTIPDVIGELKNLQILSLFGNFLHGSI  368 (472)
Q Consensus       314 ~~~~~~~~~~l~~~--~~L~~L~l~~~~i~-----------------------~~~~~~~~~~~~L~~L~L~~n~l~~~~  368 (472)
                      -.++.+....|..-  .-+..++++.|++.                       +..|..+..+++|..|++++|.+- .+
T Consensus       372 ~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~L  450 (565)
T KOG0472|consen  372 KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DL  450 (565)
T ss_pred             cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hc
Confidence            66665544433322  12445555555543                       244555667788888888888776 56


Q ss_pred             ccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCC
Q 040195          369 PSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNL  448 (472)
Q Consensus       369 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~  448 (472)
                      |..+..+-.|+.|+++.|.|. .+|........++.+-.++|++...-+..+.++.++. .||+.+|.+. .+|..+.++
T Consensus       451 P~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~-tLDL~nNdlq-~IPp~Lgnm  527 (565)
T KOG0472|consen  451 PEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT-TLDLQNNDLQ-QIPPILGNM  527 (565)
T ss_pred             chhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc-eeccCCCchh-hCChhhccc
Confidence            777777777888888888777 6777777777788888888888733344588889998 9999999888 567788999


Q ss_pred             CCCceEeccCCeec
Q 040195          449 KNLILLDISGNQFS  462 (472)
Q Consensus       449 ~~L~~L~L~~n~~~  462 (472)
                      ++|++|+++||+|.
T Consensus       528 tnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  528 TNLRHLELDGNPFR  541 (565)
T ss_pred             cceeEEEecCCccC
Confidence            99999999999986

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.7e-31  Score=248.76  Aligned_cols=341  Identities=24%  Similarity=0.321  Sum_probs=252.9

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCC-CCCcccCCCCCCcEEE
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG-TIPTNLSRCSELTHLR  116 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~  116 (472)
                      .+++.|.+....+ ...+..++.+.+|++|.+.+|++. .....+..++.|+.+.+..|++.. .+|..+..+..|.+|+
T Consensus        32 t~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD  109 (1255)
T KOG0444|consen   32 TQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD  109 (1255)
T ss_pred             hheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence            5678888888777 345678899999999999999988 455668899999999999998763 4677788999999999


Q ss_pred             cccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcccc
Q 040195          117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY  196 (472)
Q Consensus       117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  196 (472)
                      +++|++. ..|..+..-+++-.|++++|.|..+.-..+.+++.|-.|++++|++. ..|..+..+..|++|.+++|++..
T Consensus       110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~h  187 (1255)
T KOG0444|consen  110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNH  187 (1255)
T ss_pred             cchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhH
Confidence            9999999 78999999999999999999998555556678999999999999997 678888999999999999998733


Q ss_pred             ccccccccChhhhcCCCCccEEEcccccccc-cCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCC
Q 040195          197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVG-SIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGI  275 (472)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  275 (472)
                      .       ....+..+++|+.|.+++..-+- .+|..+..+.+|..++++.|.+. ..+..+..+++|+.|++++|.++.
T Consensus       188 f-------QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  188 F-------QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE  259 (1255)
T ss_pred             H-------HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee
Confidence            3       22223355677788888765432 56777889999999999999987 667778899999999999998762


Q ss_pred             CCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEecccccccc-CcchhhcCCCCC
Q 040195          276 GTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHG-TIPDVIGELKNL  354 (472)
Q Consensus       276 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L  354 (472)
                      ....                   ...- .+++.|+++.|.++. +|..++++++|+.|...+|.+.- -+|..++++..|
T Consensus       260 L~~~-------------------~~~W-~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  260 LNMT-------------------EGEW-ENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL  318 (1255)
T ss_pred             eecc-------------------HHHH-hhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence            1110                   0000 155666666666653 34456666666666666665542 245556666666


Q ss_pred             cEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCccc
Q 040195          355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLT  413 (472)
Q Consensus       355 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~  413 (472)
                      +.+..++|.+. ..|+.++.|..|+.|.|+.|.+. .+|+++.-++.|+.|++..|+..
T Consensus       319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            66666666665 56666666666666666666655 45666666666666666666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.95  E-value=9.5e-31  Score=231.61  Aligned_cols=381  Identities=27%  Similarity=0.364  Sum_probs=281.0

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV  117 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l  117 (472)
                      .++++++++.+.+.. .++.++.+..+..++-.+|.+. ..|.++.++.+|..+++.+|.+... |...-+++.|++++.
T Consensus       114 ~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~  190 (565)
T KOG0472|consen  114 ISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDC  190 (565)
T ss_pred             hhhhhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhccc
Confidence            556777777777743 4556777888888888888887 5677888889999999999999844 444445999999999


Q ss_pred             ccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccc
Q 040195          118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV  197 (472)
Q Consensus       118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  197 (472)
                      ..|-++ .+|..++.+.+|.-|++.+|++. ..| .|..+..|+++.++.|.+..........++++..||+.+|++.. 
T Consensus       191 ~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-  266 (565)
T KOG0472|consen  191 NSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-  266 (565)
T ss_pred             chhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-
Confidence            999888 78999999999999999999998 667 78899999999999999874444455689999999999999844 


Q ss_pred             cccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccccccccc--CCCCeE-------Ec
Q 040195          198 SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSL--KNLAVL-------NL  268 (472)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L-------~l  268 (472)
                            +|.+.. -+++|..|++++|.+++ .|..++++ .|+.|-+.+|++...-...+..-  .-|++|       .+
T Consensus       267 ------~Pde~c-lLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dgl  337 (565)
T KOG0472|consen  267 ------VPDEIC-LLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGL  337 (565)
T ss_pred             ------CchHHH-HhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCC
Confidence                  443433 67889999999999984 67779999 99999999998753211111000  001111       11


Q ss_pred             CCCc---CCCCCCCCcch--hhhhcccCCC--------cCCchhhhcc--ccccEEEeecccccC---------------
Q 040195          269 ERNN---LGIGTANDLGF--VTFLTNCSSL--------KLPHSIANLS--STMTHFYIGGNQILG---------------  318 (472)
Q Consensus       269 ~~~~---~~~~~~~~~~~--~~~~~~~~~l--------~~~~~~~~~~--~~l~~l~l~~~~~~~---------------  318 (472)
                      +...   .+........+  ...+.+.+.+        .+|...++..  .-+..+++++|.+.+               
T Consensus       338 S~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l  417 (565)
T KOG0472|consen  338 SQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDL  417 (565)
T ss_pred             CCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHH
Confidence            1110   00000000000  0111111111        1333222221  124455555555432               


Q ss_pred             --------cccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccc
Q 040195          319 --------IIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG  390 (472)
Q Consensus       319 --------~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~  390 (472)
                              ..+..++.+++|..|++++|-+. .+|..++.+-.|+.|+++.|++. ..|+++..+..+|.+-.++|++..
T Consensus       418 ~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~  495 (565)
T KOG0472|consen  418 VLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS  495 (565)
T ss_pred             HhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccc
Confidence                    24456677899999999999888 67777888889999999999998 899999999999999999999996


Q ss_pred             cCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCccc
Q 040195          391 NIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLN  438 (472)
Q Consensus       391 ~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~  438 (472)
                      ..+..+..+..|.+||+.+|.+. .+|..+++|++++ .|+++||.+.
T Consensus       496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~-hLeL~gNpfr  541 (565)
T KOG0472|consen  496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR-HLELDGNPFR  541 (565)
T ss_pred             cChHHhhhhhhcceeccCCCchh-hCChhhcccccee-EEEecCCccC
Confidence            66666999999999999999999 8999999999999 9999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.93  E-value=1.3e-28  Score=239.22  Aligned_cols=406  Identities=29%  Similarity=0.351  Sum_probs=221.3

Q ss_pred             ceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcc
Q 040195           39 RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVA  118 (472)
Q Consensus        39 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~  118 (472)
                      +++.||+++|.+ ...+..+..+.+|+.|+++.|.+. ..|....++.+|++++|.+|... ..|..+..+.+|+.|+++
T Consensus        46 ~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence            377777777766 334455667777777777777666 44566667777777777777665 566677777777777777


Q ss_pred             cCcCcccCCccccCCCCC-------------------cEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccc
Q 040195          119 NNKLEGQIPKEIGSLLKL-------------------QTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLG  179 (472)
Q Consensus       119 ~~~~~~~~~~~l~~l~~L-------------------~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~  179 (472)
                      .|.+. ..|..+..+..+                   +++++..+.+.+.++..+..+..  .+++.+|.+..   ..+.
T Consensus       123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls  196 (1081)
T KOG0618|consen  123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLS  196 (1081)
T ss_pred             hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhh
Confidence            77665 344333333333                   33333333333333333333333  36666666541   1223


Q ss_pred             cCCCccEEEccCCcccccc----------ccccccC-hhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCc
Q 040195          180 LLRNLVYLNVNENQFWYVS----------SFSGSLP-FDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ  248 (472)
Q Consensus       180 ~~~~L~~L~l~~~~l~~~~----------~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~  248 (472)
                      .+.+|+.+....|.+..+.          +....+. ........+|+.++++.+.+.. +|.++..+++|+.++..+|.
T Consensus       197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~  275 (1081)
T KOG0618|consen  197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNR  275 (1081)
T ss_pred             hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcccceEecccchh
Confidence            3334444433333322111          0000000 0011123457777777777763 44777777777777777776


Q ss_pred             cccc----------------------ccccccccCCCCeEEcCCCcCCCCCCCCcchhhh------hcccCCCcCCchhh
Q 040195          249 FEGK----------------------VSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTF------LTNCSSLKLPHSIA  300 (472)
Q Consensus       249 ~~~~----------------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~  300 (472)
                      +...                      .+.-+..+++|++|++..|++.......+..+..      ....+.-..|..-.
T Consensus       276 l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e  355 (1081)
T KOG0618|consen  276 LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE  355 (1081)
T ss_pred             HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence            6422                      1122344667888888888776433211111111      00011111222222


Q ss_pred             hccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCe
Q 040195          301 NLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLAN  380 (472)
Q Consensus       301 ~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~  380 (472)
                      ...+.++.|++.+|.+++.....+.++++|+.|+|++|++.......+.++..|++|++++|+++ .+|..+..+..|++
T Consensus       356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~t  434 (1081)
T KOG0618|consen  356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHT  434 (1081)
T ss_pred             hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHH
Confidence            33345666666666666665556666666777777777666444445666666667777777666 55566666666777


Q ss_pred             eeccCCcccccCCcCccCCCCCceEeecCCcccc-cCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCC
Q 040195          381 LELSSNSLQGNIPLSVGNCQNLIGFDASHITLTG-ALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN  459 (472)
Q Consensus       381 L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~-~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n  459 (472)
                      |...+|.+. ..| .+..++.|+.+|+|.|++.. .++.. ...++|+ +||++||.-....-+.|..++++...+++-+
T Consensus       435 L~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~Lk-yLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  435 LRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLK-YLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             HhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh-CCCcccc-eeeccCCcccccchhhhHHhhhhhheecccC
Confidence            766666666 455 56666667777777666652 12222 1125666 6777766433233455555566666655555

>PLN03210 Resistant to P

Probab=99.93  E-value=1.6e-24  Score=233.04  Aligned_cols=363  Identities=21%  Similarity=0.288  Sum_probs=245.4

Q ss_pred             CceEEEECCCCccC--cccCccccCCCCccEEeccCCcC------ccCcchhhhcCC-CCCEEEccCcccCCCCCcccCC
Q 040195           38 QRVTELDLSNQRIG--GVLSPYVGNLSFLRYINLSDNGF------HGEIPQEIGNLY-RLEKLELSNNSFSGTIPTNLSR  108 (472)
Q Consensus        38 ~~l~~L~l~~~~~~--~~~~~~l~~~~~L~~L~L~~~~~------~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~l~~  108 (472)
                      .+++.+.+....+.  ......|.+|++|+.|.+..+..      ....|+.+..++ +|+.|.+.++.+. .+|..+ .
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~  609 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R  609 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence            55666655544443  23446788999999999976532      223566677765 5999999999887 677777 5


Q ss_pred             CCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEE
Q 040195          109 CSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLN  188 (472)
Q Consensus       109 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  188 (472)
                      ..+|++|++.++.+. .++..+..+++|+.|+++++......|. ++.+++|++|++.+|......|..+..+++|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            689999999999988 6778888999999999998764435554 77899999999999876667888899999999999


Q ss_pred             ccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEc
Q 040195          189 VNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNL  268 (472)
Q Consensus       189 l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  268 (472)
                      +++|..      ...+|...  .+++|+.|++++|.....+|..   .++|+.|++++|.+.. .+..+ .+++|++|.+
T Consensus       688 L~~c~~------L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l  754 (1153)
T PLN03210        688 MSRCEN------LEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RLENLDELIL  754 (1153)
T ss_pred             CCCCCC------cCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-cccccccccc
Confidence            998741      13344332  6789999999999765555542   4678999999998763 33333 5788888888


Q ss_pred             CCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhh
Q 040195          269 ERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI  348 (472)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  348 (472)
                      .++......       ..+     ..++......+++|+.|++++|......+..+.++++|+.|+|++|...+.+|...
T Consensus       755 ~~~~~~~l~-------~~~-----~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~  822 (1153)
T PLN03210        755 CEMKSEKLW-------ERV-----QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI  822 (1153)
T ss_pred             cccchhhcc-------ccc-----cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence            765432100       000     00111112233467777777766555556666677777777777764433455443


Q ss_pred             cCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccce
Q 040195          349 GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSL  428 (472)
Q Consensus       349 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~  428 (472)
                       .+++|++|++++|.....+|..   .++|++|++++|.++ .+|.++..+++|+.|++++|+....+|..+..++.++ 
T Consensus       823 -~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~-  896 (1153)
T PLN03210        823 -NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE-  896 (1153)
T ss_pred             -CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC-
Confidence             5667777777776543333332   356777777777666 5666666677777777777654445666666666666 


Q ss_pred             EEEcCCC
Q 040195          429 YLDLSHN  435 (472)
Q Consensus       429 ~L~ls~n  435 (472)
                      .+++++|
T Consensus       897 ~L~l~~C  903 (1153)
T PLN03210        897 TVDFSDC  903 (1153)
T ss_pred             eeecCCC
Confidence            6677666

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.91  E-value=6.5e-27  Score=227.57  Aligned_cols=373  Identities=28%  Similarity=0.320  Sum_probs=229.1

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV  117 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l  117 (472)
                      ..++.|+++.|.+..-+..++++.-+|+.|++++|.+. ..|..+..+++|+.|+++.|.+. ..|....++.+|+++.+
T Consensus        21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL   98 (1081)
T KOG0618|consen   21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNL   98 (1081)
T ss_pred             HHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhee
Confidence            34778888888776655666777777999999988877 67788888899999999988887 66777888899999999


Q ss_pred             ccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccc
Q 040195          118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV  197 (472)
Q Consensus       118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  197 (472)
                      ..+.+. ..|..+..+++|+.|+++.|.+. ..|..+..+..++.+..++|...    ..++... ++++++..+.+.  
T Consensus        99 ~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~~-ik~~~l~~n~l~--  169 (1081)
T KOG0618|consen   99 KNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI----QRLGQTS-IKKLDLRLNVLG--  169 (1081)
T ss_pred             ccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh----hhhcccc-chhhhhhhhhcc--
Confidence            888887 78888888899999999988887 77777878888888888887221    1222222 666666666531  


Q ss_pred             cccccccChhhhcCCCCcc-EEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCC
Q 040195          198 SSFSGSLPFDILVNLPNLK-KLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG  276 (472)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  276 (472)
                          +.++.    ..-.++ .|++.+|.+..   ..+..+++|+.+....|++....    -..++++.|+...|.+...
T Consensus       170 ----~~~~~----~i~~l~~~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~  234 (1081)
T KOG0618|consen  170 ----GSFLI----DIYNLTHQLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTL  234 (1081)
T ss_pred             ----cchhc----chhhhheeeecccchhhh---hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceee
Confidence                22222    222334 48999988762   23567888999998888775211    2457889999999887621


Q ss_pred             CCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEecccccccc--------------
Q 040195          277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHG--------------  342 (472)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~--------------  342 (472)
                      ..                     ...+.+++.++++.+.++... .++..+.+|+.++..+|.+..              
T Consensus       235 ~~---------------------~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l  292 (1081)
T KOG0618|consen  235 DV---------------------HPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSL  292 (1081)
T ss_pred             cc---------------------ccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHH
Confidence            11                     111225666666666666554 566666666666666666541              


Q ss_pred             --------CcchhhcCCCCCcEEEccCCcCccccccch-h-------------------------cccccCeeeccCCcc
Q 040195          343 --------TIPDVIGELKNLQILSLFGNFLHGSIPSSL-G-------------------------NLTKLANLELSSNSL  388 (472)
Q Consensus       343 --------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~-------------------------~~~~L~~L~l~~~~~  388 (472)
                              -+|......++|++|+|..|++. .+|+.+ .                         .++.|+.|.+.+|.+
T Consensus       293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L  371 (1081)
T KOG0618|consen  293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL  371 (1081)
T ss_pred             HhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence                    22333344555666666665554 222211 0                         112234444444444


Q ss_pred             cccCCcCccCCCCCceEeecCCcccccCC-hhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeec
Q 040195          389 QGNIPLSVGNCQNLIGFDASHITLTGALP-QQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS  462 (472)
Q Consensus       389 ~~~~~~~~~~~~~L~~L~ls~~~~~~~~~-~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~  462 (472)
                      ++..-..+..++.||.|++++|++. ++| ..+.++..|+ .|+||||+++ .+|..+..+..|++|...+|.+.
T Consensus       372 td~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~Le-eL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  372 TDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELE-ELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             cccchhhhccccceeeeeecccccc-cCCHHHHhchHHhH-HHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence            4333333444445555555555444 222 2334444444 4555555554 33444444555555554444443

>PLN03210 Resistant to P

Probab=99.89  E-value=1.1e-21  Score=211.39  Aligned_cols=342  Identities=20%  Similarity=0.247  Sum_probs=250.5

Q ss_pred             CcchhhhcCCCCCEEEccCccc------CCCCCcccCCC-CCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCC
Q 040195           77 EIPQEIGNLYRLEKLELSNNSF------SGTIPTNLSRC-SELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQ  149 (472)
Q Consensus        77 ~~~~~~~~l~~L~~L~L~~~~~------~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~  149 (472)
                      ..+.+|.++++|+.|.+..+..      ....|..+..+ ++|+.|.+.++++. .+|..+ ...+|+.|++.++.+. .
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence            4456788899999998865432      22345555554 46999999998887 667666 4689999999998887 5


Q ss_pred             CCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccC
Q 040195          150 LPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI  229 (472)
Q Consensus       150 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  229 (472)
                      ++..+..+++|+.++++++......+ .+..+++|+.|++++|..      ...+| ..+..+++|+.|++++|.....+
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~------L~~lp-~si~~L~~L~~L~L~~c~~L~~L  697 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSS------LVELP-SSIQYLNKLEDLDMSRCENLEIL  697 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCC------ccccc-hhhhccCCCCEEeCCCCCCcCcc
Confidence            66777788999999998875443444 477889999999988752      12333 23567889999999988655555


Q ss_pred             CccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEE
Q 040195          230 PDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHF  309 (472)
Q Consensus       230 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l  309 (472)
                      |..+ ++++|+.|++++|......+.   ...+|+.|+++++.+..                   +|..+  ..++++.|
T Consensus       698 p~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-------------------lP~~~--~l~~L~~L  752 (1153)
T PLN03210        698 PTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-------------------FPSNL--RLENLDEL  752 (1153)
T ss_pred             CCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-------------------ccccc--cccccccc
Confidence            5544 688999999998854333332   24678899998887652                   22111  11256666


Q ss_pred             Eeeccccc-------CcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeee
Q 040195          310 YIGGNQIL-------GIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLE  382 (472)
Q Consensus       310 ~l~~~~~~-------~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~  382 (472)
                      .+.++...       ...+......++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .+++|+.|+
T Consensus       753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~  831 (1153)
T PLN03210        753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLD  831 (1153)
T ss_pred             cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEE
Confidence            66553321       1111223345789999999998777889999999999999999987555677665 689999999


Q ss_pred             ccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCC-cccccccccccCCCCCceEeccCCee
Q 040195          383 LSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHN-LLNGSLLLQVGNLKNLILLDISGNQF  461 (472)
Q Consensus       383 l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n-~l~~~~~~~l~~~~~L~~L~L~~n~~  461 (472)
                      +++|.....+|.   ...+|+.|++++|.+. .+|..+..+++|+ .|++++| ++. .++..+..+++|+.+++++|.-
T Consensus       832 Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~-~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        832 LSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLS-FLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             CCCCCccccccc---cccccCEeECCCCCCc-cChHHHhcCCCCC-EEECCCCCCcC-ccCcccccccCCCeeecCCCcc
Confidence            999976645543   3478999999999998 7899999999999 9999996 555 5677788899999999999973

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=1.3e-23  Score=186.22  Aligned_cols=387  Identities=19%  Similarity=0.188  Sum_probs=213.4

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccC-cccCCCCCcccCCCCCCcEEE
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSN-NSFSGTIPTNLSRCSELTHLR  116 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~L~  116 (472)
                      +....+++..|.|+.+++..|+.+++||+|+|++|.+..+.|++|..+++|..|-+.+ |+|++.....|.++..++.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            4556788888888888888888888888888888888888888888888887776666 777755556677888888888


Q ss_pred             cccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccc-c-----------ccccccccCCCc
Q 040195          117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLG-G-----------KIPTTLGLLRNL  184 (472)
Q Consensus       117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~-~-----------~~~~~l~~~~~L  184 (472)
                      +.-|++.-...+.|..++++..|.+.+|.+..+....+..+..++++.+..|.+. .           ..+..++.....
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            8777776556667788888888888888776443446666777777766665521 0           011111111111


Q ss_pred             cEEEccCCccccccccccccChhhhcCCCCccEE---EcccccccccCC-ccCcCCCCCCEEecCCCccccccccccccc
Q 040195          185 VYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL---CIAENNFVGSIP-DSLSNASNLELLELAGNQFEGKVSIDFSSL  260 (472)
Q Consensus       185 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L---~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l  260 (472)
                      ....+.+.++..       +....+..  .++++   ..+.+......| ..|..+++|++|++++|.++.....+|.+.
T Consensus       227 ~p~rl~~~Ri~q-------~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~  297 (498)
T KOG4237|consen  227 SPYRLYYKRINQ-------EDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA  297 (498)
T ss_pred             chHHHHHHHhcc-------cchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence            111122222111       11111100  01111   111111111111 235556666666666666665555566666


Q ss_pred             CCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEecccccc
Q 040195          261 KNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQL  340 (472)
Q Consensus       261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i  340 (472)
                      ..++.|.+..|++..                   +...++.....|+.|++.+|.|+.+.+..|....+|.+|++-.|.+
T Consensus       298 a~l~eL~L~~N~l~~-------------------v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  298 AELQELYLTRNKLEF-------------------VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhhhhcCcchHHH-------------------HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            666666666655531                   1122222333556666666666666666666666666666655433


Q ss_pred             cc-----Ccchhh-----------cCCCCCcEEEccCCcCccc---ccc---------chhcccccCeeeccCCcccccC
Q 040195          341 HG-----TIPDVI-----------GELKNLQILSLFGNFLHGS---IPS---------SLGNLTKLANLELSSNSLQGNI  392 (472)
Q Consensus       341 ~~-----~~~~~~-----------~~~~~L~~L~L~~n~l~~~---~~~---------~l~~~~~L~~L~l~~~~~~~~~  392 (472)
                      .-     -..+|+           ++...++.+.++...+.+.   .++         +-..++-+.+..=-.|+....+
T Consensus       359 ~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~l  438 (498)
T KOG4237|consen  359 NCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLL  438 (498)
T ss_pred             cCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhc
Confidence            10     000111           1123455566655544321   111         1122333333222222222233


Q ss_pred             CcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCC
Q 040195          393 PLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN  459 (472)
Q Consensus       393 ~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n  459 (472)
                      |..+  ...-.++.+.+|.++ .+|..  ....++  +++++|++...--..|++++.|.+|-|+.|
T Consensus       439 p~~i--P~d~telyl~gn~~~-~vp~~--~~~~l~--~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  439 PRGI--PVDVTELYLDGNAIT-SVPDE--LLRSLL--LDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             CCCC--CchhHHHhcccchhc-ccCHH--HHhhhh--cccccCceehhhcccccchhhhheeEEecC
Confidence            3221  234467778888887 67765  344443  888888887544567788888888888765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=8.4e-20  Score=183.30  Aligned_cols=114  Identities=27%  Similarity=0.362  Sum_probs=56.7

Q ss_pred             CCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEcc
Q 040195          111 ELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVN  190 (472)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  190 (472)
                      .-..|+++.+.++ .+|..+.  ++|+.|++.+|.++ .+|.   ..++|++|++++|.++. +|.   ..++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccC---cccccceeecc
Confidence            3445666666665 4454443  35666666666665 3333   23556666666665552 232   13455566666


Q ss_pred             CCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccc
Q 040195          191 ENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFE  250 (472)
Q Consensus       191 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~  250 (472)
                      +|.+..+..           ..++|+.|++++|.++. +|.   .+++|+.|++++|.+.
T Consensus       271 ~N~L~~Lp~-----------lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        271 SNPLTHLPA-----------LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA  315 (788)
T ss_pred             CCchhhhhh-----------chhhcCEEECcCCcccc-ccc---cccccceeECCCCccc
Confidence            655432211           11345555565555553 222   1345555555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.82  E-value=5.1e-22  Score=176.20  Aligned_cols=361  Identities=21%  Similarity=0.235  Sum_probs=197.5

Q ss_pred             CCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccc-cCCCCCCCccccCCCCccEEEec
Q 040195           88 LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYY-NNLTGQLPDFVGNLSALQVIYIR  166 (472)
Q Consensus        88 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~i~~~~~~~l~~~~~L~~L~l~  166 (472)
                      -.++.|..|.|+.+.+..|+.+++|+.|++++|.|+.+.|++|..++++.+|.+.+ |+|++.....|.++..++.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            34555555555555555555555666666666555555555555555555555544 55554444555555555555555


Q ss_pred             CCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCC
Q 040195          167 GNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAG  246 (472)
Q Consensus       167 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  246 (472)
                      -|.+.......|..++++..|.+.+|.+..+       +...+.....++.+.+..+.+..     ..+++.+....   
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i-------~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~---  213 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSI-------CKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL---  213 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhhhh-------ccccccchhccchHhhhcCcccc-----ccccchhhhHH---
Confidence            5555544444555555555555555544222       22223344444444444443210     11111111100   


Q ss_pred             CcccccccccccccCCCCeEEcCCCcCCCCCCCCcc-----hhh-hhccc-CCCcCCchhhhccccccEEEeecccccCc
Q 040195          247 NQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLG-----FVT-FLTNC-SSLKLPHSIANLSSTMTHFYIGGNQILGI  319 (472)
Q Consensus       247 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~-~~~~~-~~l~~~~~~~~~~~~l~~l~l~~~~~~~~  319 (472)
                          ...+..++......-..+.+.++.......+.     ++. ....+ .....|..-+...++|+++++++|.++.+
T Consensus       214 ----a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i  289 (498)
T KOG4237|consen  214 ----AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI  289 (498)
T ss_pred             ----hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh
Confidence                00111111221122222222222211111000     000 00111 11123333344445899999999999999


Q ss_pred             ccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccccc--C-----
Q 040195          320 IHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGN--I-----  392 (472)
Q Consensus       320 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~--~-----  392 (472)
                      .+.+|.....+++|.|..|.+......+|..+..|+.|+|++|+|+...|.+|..+..|.+|++-.|++--.  +     
T Consensus       290 ~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~  369 (498)
T KOG4237|consen  290 EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE  369 (498)
T ss_pred             hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH
Confidence            999999999999999999998876667888899999999999999988888999999999999988876510  0     


Q ss_pred             ---------CcCccCCCCCceEeecCCcccc---cCCh------------------hhhhhccc------------ceEE
Q 040195          393 ---------PLSVGNCQNLIGFDASHITLTG---ALPQ------------------QLLSITTL------------SLYL  430 (472)
Q Consensus       393 ---------~~~~~~~~~L~~L~ls~~~~~~---~~~~------------------~l~~~~~l------------~~~L  430 (472)
                               ...=+....++.+.++...+.+   ..|+                  .+..|++.            ..++
T Consensus       370 Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~tel  449 (498)
T KOG4237|consen  370 WLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTEL  449 (498)
T ss_pred             HHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHH
Confidence                     0001122356666666554421   1111                  12222221            1168


Q ss_pred             EcCCCcccccccccccCCCCCceEeccCCeeccccCCcccc
Q 040195          431 DLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSI  471 (472)
Q Consensus       431 ~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~  471 (472)
                      ++.+|+++ .+|..  .+.+| .+|+++|+++.---.+|+|
T Consensus       450 yl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n  486 (498)
T KOG4237|consen  450 YLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSN  486 (498)
T ss_pred             hcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccc
Confidence            88999998 44544  66788 9999999998655555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=6e-19  Score=177.19  Aligned_cols=265  Identities=25%  Similarity=0.310  Sum_probs=155.4

Q ss_pred             CCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEe
Q 040195           86 YRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYI  165 (472)
Q Consensus        86 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l  165 (472)
                      ..-..|+++.+.++ .+|..+.  ++|+.|.+.+|+++ .+|.   ..++|++|++++|.++ .+|..   .++|+.|++
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence            34567888888776 5565554  47888888888877 3443   2477888888888777 34432   357788888


Q ss_pred             cCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecC
Q 040195          166 RGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELA  245 (472)
Q Consensus       166 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~  245 (472)
                      .+|.++ .++..   .++|+.|++++|.+..+       |.    ..++|+.|++++|.+.+. |..   ..+|+.|.++
T Consensus       270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~L-------P~----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls  330 (788)
T PRK15387        270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTSL-------PV----LPPGLQELSVSDNQLASL-PAL---PSELCKLWAY  330 (788)
T ss_pred             cCCchh-hhhhc---hhhcCEEECcCCccccc-------cc----cccccceeECCCCccccC-CCC---cccccccccc
Confidence            888776 23332   25677788888876433       21    236788888888877743 321   2457777777


Q ss_pred             CCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCccccccc
Q 040195          246 GNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIR  325 (472)
Q Consensus       246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~  325 (472)
                      +|.++.. +.   ...+|+.|++++|++..                   +|.    .+++++.|++++|.+..+..    
T Consensus       331 ~N~L~~L-P~---lp~~Lq~LdLS~N~Ls~-------------------LP~----lp~~L~~L~Ls~N~L~~LP~----  379 (788)
T PRK15387        331 NNQLTSL-PT---LPSGLQELSVSDNQLAS-------------------LPT----LPSELYKLWAYNNRLTSLPA----  379 (788)
T ss_pred             cCccccc-cc---cccccceEecCCCccCC-------------------CCC----CCcccceehhhccccccCcc----
Confidence            7777632 21   12467777777777652                   111    11245566666666554321    


Q ss_pred             CccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceE
Q 040195          326 NLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGF  405 (472)
Q Consensus       326 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  405 (472)
                      ...+|+.|++++|.+.. +|..   .++|+.|++++|.+. .+|..   ..+|+.|++++|+++ .+|..+..+++|+.|
T Consensus       380 l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L  450 (788)
T PRK15387        380 LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTV  450 (788)
T ss_pred             cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence            12356666666666652 3321   245666666666655 23332   234555666666665 455555556666666


Q ss_pred             eecCCcccccCChhh
Q 040195          406 DASHITLTGALPQQL  420 (472)
Q Consensus       406 ~ls~~~~~~~~~~~l  420 (472)
                      ++++|++++..+..+
T Consensus       451 dLs~N~Ls~~~~~~L  465 (788)
T PRK15387        451 NLEGNPLSERTLQAL  465 (788)
T ss_pred             ECCCCCCCchHHHHH
Confidence            666666655444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=1.7e-19  Score=169.52  Aligned_cols=287  Identities=22%  Similarity=0.249  Sum_probs=149.4

Q ss_pred             EEEccccCCC-CCCCccccCCCCccEEEecCCccccc----cccccccCCCccEEEccCCccccccccccccChhhhcCC
Q 040195          138 TLALYYNNLT-GQLPDFVGNLSALQVIYIRGNSLGGK----IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNL  212 (472)
Q Consensus       138 ~L~l~~~~i~-~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~  212 (472)
                      +|++..+.++ ......+..++.|+.+.+.++.++..    ++..+...+.+++++++++.+........ .....+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~-~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQ-SLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHH-HHHHHHHhc
Confidence            3555555554 23344445566677777777776432    22334455667777777665421000000 001223334


Q ss_pred             CCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCC
Q 040195          213 PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSS  292 (472)
Q Consensus       213 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  292 (472)
                      ++|++|++++|.+....+..+..+.+                    . ++|++|++++|.++..+...            
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~------------  127 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRL------------  127 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhc--------------------c-CcccEEEeeCCccchHHHHH------------
Confidence            45555555555443222222221111                    0 22455555444443110000            


Q ss_pred             CcCCchhhhccccccEEEeecccccCc----ccccccCccCcceEeccccccccC----cchhhcCCCCCcEEEccCCcC
Q 040195          293 LKLPHSIANLSSTMTHFYIGGNQILGI----IHFGIRNLVNLIALGMQSNQLHGT----IPDVIGELKNLQILSLFGNFL  364 (472)
Q Consensus       293 l~~~~~~~~~~~~l~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~L~~n~l  364 (472)
                        +...+....++++.+++++|.++..    ....+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+
T Consensus       128 --l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         128 --LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             --HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence              0001111112455555555554421    222445556777777777777642    223344556888888888877


Q ss_pred             ccc----cccchhcccccCeeeccCCcccccCCcCcc-----CCCCCceEeecCCcccc----cCChhhhhhcccceEEE
Q 040195          365 HGS----IPSSLGNLTKLANLELSSNSLQGNIPLSVG-----NCQNLIGFDASHITLTG----ALPQQLLSITTLSLYLD  431 (472)
Q Consensus       365 ~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~ls~~~~~~----~~~~~l~~~~~l~~~L~  431 (472)
                      .+.    +...+..+++|++|++++|++++.....+.     ..+.|+.|++++|.+++    .+...+..++.++ +++
T Consensus       206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~-~l~  284 (319)
T cd00116         206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL-ELD  284 (319)
T ss_pred             ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCcc-EEE
Confidence            533    233455677788888888877642221111     23688888888887752    2334455556777 888


Q ss_pred             cCCCccccc----ccccccCC-CCCceEeccCCee
Q 040195          432 LSHNLLNGS----LLLQVGNL-KNLILLDISGNQF  461 (472)
Q Consensus       432 ls~n~l~~~----~~~~l~~~-~~L~~L~L~~n~~  461 (472)
                      +++|.+++.    ....+... +.|+++++.+|++
T Consensus       285 l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         285 LRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            888888754    33444444 6788888887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=6.3e-17  Score=163.75  Aligned_cols=245  Identities=23%  Similarity=0.355  Sum_probs=128.0

Q ss_pred             CcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccC
Q 040195          112 LTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNE  191 (472)
Q Consensus       112 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  191 (472)
                      ...|+++++.++ .+|..+.  ++|+.|++++|.++ .+|..+.  .+|++|++++|.++ .+|..+.  ++|+.|++++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI  250 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence            445555555554 2333322  34555555555555 3333222  35555555555554 2333221  3455666666


Q ss_pred             CccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCC
Q 040195          192 NQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERN  271 (472)
Q Consensus       192 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  271 (472)
                      |.+..+       |...   ..+|+.|++++|.++. +|..+  .++|+.|++++|.++.. +..+  .++|+.|++++|
T Consensus       251 N~L~~L-------P~~l---~s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N  314 (754)
T PRK15370        251 NRITEL-------PERL---PSALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSN  314 (754)
T ss_pred             CccCcC-------ChhH---hCCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccccC-cccc--hhhHHHHHhcCC
Confidence            555222       2211   1345666666665553 33333  23566666666665532 2211  134566666666


Q ss_pred             cCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCC
Q 040195          272 NLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGEL  351 (472)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~  351 (472)
                      .+..                   +|..   .+++|+.|++++|.++.+. ..+  .++|+.|++++|.+. .+|..+  .
T Consensus       315 ~Lt~-------------------LP~~---l~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~-~LP~~l--p  366 (754)
T PRK15370        315 SLTA-------------------LPET---LPPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQIT-VLPETL--P  366 (754)
T ss_pred             cccc-------------------CCcc---ccccceeccccCCccccCC-hhh--cCcccEEECCCCCCC-cCChhh--c
Confidence            5541                   1110   1125666666666665432 222  256777777777776 444443  2


Q ss_pred             CCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCc----cCCCCCceEeecCCccc
Q 040195          352 KNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSV----GNCQNLIGFDASHITLT  413 (472)
Q Consensus       352 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~ls~~~~~  413 (472)
                      ++|+.|++++|.+. .+|..+.  ..|+.|++++|++. .+|..+    ..++.+..+++.+|++.
T Consensus       367 ~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        367 PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            57777777777776 4454433  35777777777776 444433    33466777777777776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=9.2e-19  Score=164.51  Aligned_cols=81  Identities=20%  Similarity=0.223  Sum_probs=41.0

Q ss_pred             EeccCCcCcc-CcchhhhcCCCCCEEEccCcccCCC----CCcccCCCCCCcEEEcccCcCcc------cCCccccCCCC
Q 040195           67 INLSDNGFHG-EIPQEIGNLYRLEKLELSNNSFSGT----IPTNLSRCSELTHLRVANNKLEG------QIPKEIGSLLK  135 (472)
Q Consensus        67 L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~------~~~~~l~~l~~  135 (472)
                      |+|.++.+.+ .....+..+.+|++++++++.+...    .+..+...+.+++++++++.+..      ..+..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            5555555542 3334455666677777777765421    23334455566666666655431      11123334445


Q ss_pred             CcEEEccccCCC
Q 040195          136 LQTLALYYNNLT  147 (472)
Q Consensus       136 L~~L~l~~~~i~  147 (472)
                      |+.|+++++.+.
T Consensus        83 L~~L~l~~~~~~   94 (319)
T cd00116          83 LQELDLSDNALG   94 (319)
T ss_pred             eeEEEccCCCCC
Confidence            555555444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=8.1e-17  Score=162.93  Aligned_cols=247  Identities=23%  Similarity=0.368  Sum_probs=169.3

Q ss_pred             CCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCC
Q 040195          134 LKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLP  213 (472)
Q Consensus       134 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~  213 (472)
                      .+...|+++++.++ .+|..+.  +.|+.|++++|.++ .++..+.  ++|+.|++++|.+..+       |...   .+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL-------P~~l---~~  241 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI-------PATL---PD  241 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC-------Chhh---hc
Confidence            45678899888887 5665443  57899999999888 4555443  5899999999987433       3222   24


Q ss_pred             CccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCC
Q 040195          214 NLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL  293 (472)
Q Consensus       214 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l  293 (472)
                      +|+.|++++|.+. .+|..+  .++|+.|++++|.+.. .+..+.  ++|+.|++++|++..                  
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~------------------  297 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERL--PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT------------------  297 (754)
T ss_pred             cccEEECcCCccC-cCChhH--hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc------------------
Confidence            7899999999887 445444  3578999999998873 344332  578999999987752                  


Q ss_pred             cCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchh
Q 040195          294 KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLG  373 (472)
Q Consensus       294 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  373 (472)
                       +|..   .+++++.|++++|.++.+.. .+  .++|+.|++++|.+.. +|..+  .++|+.|++++|++. .+|..+ 
T Consensus       298 -LP~~---lp~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l-  365 (754)
T PRK15370        298 -LPAH---LPSGITHLNVQSNSLTALPE-TL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL-  365 (754)
T ss_pred             -Cccc---chhhHHHHHhcCCccccCCc-cc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh-
Confidence             1111   12367778888887775432 22  2678888888888774 45444  268888888888876 455544 


Q ss_pred             cccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhh----cccceEEEcCCCccc
Q 040195          374 NLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSI----TTLSLYLDLSHNLLN  438 (472)
Q Consensus       374 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~----~~l~~~L~ls~n~l~  438 (472)
                       .+.|+.|++++|+++ .+|..+.  .+|+.|++++|++. .+|..+.++    +.+. .+++.+|++.
T Consensus       366 -p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~-~L~L~~Npls  428 (754)
T PRK15370        366 -PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT-RIIVEYNPFS  428 (754)
T ss_pred             -cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc-EEEeeCCCcc
Confidence             367888888888877 4555443  36888888888887 566555443    5556 7888888776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=5e-17  Score=128.36  Aligned_cols=160  Identities=29%  Similarity=0.413  Sum_probs=144.2

Q ss_pred             cccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195          305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS  384 (472)
Q Consensus       305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  384 (472)
                      .++.|.++.+.++.+ +..+..+.+|+.|++++|++. ..|..+..++.|+.|++.-|++. ..|..|+.+|.|+.|++.
T Consensus        34 ~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            677888899988865 446888999999999999998 77778899999999999999988 899999999999999999


Q ss_pred             CCcccc-cCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195          385 SNSLQG-NIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG  463 (472)
Q Consensus       385 ~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~  463 (472)
                      .|++.+ .+|..|..+..|+.|.++.|.+. .+|..+.++++++ .|.+.+|.+. .+|..+..++.|++|.+.+|.++ 
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lq-il~lrdndll-~lpkeig~lt~lrelhiqgnrl~-  186 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQ-ILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-  186 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhccee-EEeeccCchh-hCcHHHHHHHHHHHHhcccceee-
Confidence            999874 47888999999999999999998 7899999999999 9999999888 68999999999999999999997 


Q ss_pred             ccCCcccc
Q 040195          464 VIPVTLSI  471 (472)
Q Consensus       464 ~~p~~~~~  471 (472)
                      .+|..+++
T Consensus       187 vlppel~~  194 (264)
T KOG0617|consen  187 VLPPELAN  194 (264)
T ss_pred             ecChhhhh
Confidence            77777765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.54  E-value=1.5e-16  Score=125.68  Aligned_cols=157  Identities=34%  Similarity=0.548  Sum_probs=125.9

Q ss_pred             ccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCc
Q 040195           58 VGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQ  137 (472)
Q Consensus        58 l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  137 (472)
                      +..+.++..|.+++|.++ ..|..++.+.+|+.|++++|++. .+|..++.+++|++|+++-|.+. ..|.+|+.+|.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            445677888999999988 56667899999999999999988 78888999999999999998887 8899999999999


Q ss_pred             EEEccccCCCC-CCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCcc
Q 040195          138 TLALYYNNLTG-QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLK  216 (472)
Q Consensus       138 ~L~l~~~~i~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~  216 (472)
                      .|++..|.+.+ .+|..|..++.|+.|+++.|.+. ..|..++++.+|+.|.+.+|++-       ++|.+ ++.+..|+
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-------~lpke-ig~lt~lr  176 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-------SLPKE-IGDLTRLR  176 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-------hCcHH-HHHHHHHH
Confidence            99998887763 46777777888999999999886 67888888889998888888762       22322 23456667


Q ss_pred             EEEccccccc
Q 040195          217 KLCIAENNFV  226 (472)
Q Consensus       217 ~L~l~~~~l~  226 (472)
                      +|.+.+|+++
T Consensus       177 elhiqgnrl~  186 (264)
T KOG0617|consen  177 ELHIQGNRLT  186 (264)
T ss_pred             HHhcccceee
Confidence            7777777666

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.28  E-value=2e-13  Score=120.32  Aligned_cols=210  Identities=22%  Similarity=0.277  Sum_probs=114.9

Q ss_pred             CccccCCCCccEEeccCCcCccC----cchhhhcCCCCCEEEccCcc---cCCCCCc-------ccCCCCCCcEEEcccC
Q 040195           55 SPYVGNLSFLRYINLSDNGFHGE----IPQEIGNLYRLEKLELSNNS---FSGTIPT-------NLSRCSELTHLRVANN  120 (472)
Q Consensus        55 ~~~l~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~---~~~~~~~-------~l~~l~~L~~L~l~~~  120 (472)
                      ...+..+..++.++|++|.+...    +...+++.++|+..++++--   .....|.       .+..+++|+++++|+|
T Consensus        23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            34456677888888888877643    33445667788888877531   1112222       2234455556666555


Q ss_pred             cCcccCCcc----ccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcccc
Q 040195          121 KLEGQIPKE----IGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY  196 (472)
Q Consensus       121 ~~~~~~~~~----l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  196 (472)
                      .+....+..    +.++..|++|.+.+|.+.......++.  -|.++         ....-...-++|+++...+|++.+
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l---------~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFEL---------AVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHH---------HHHhccCCCcceEEEEeecccccc
Confidence            554333322    233445555555555443211111110  00000         011122345677777777777755


Q ss_pred             ccccccccChhhhcCCCCccEEEcccccccc----cCCccCcCCCCCCEEecCCCcccccccc----cccccCCCCeEEc
Q 040195          197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVG----SIPDSLSNASNLELLELAGNQFEGKVSI----DFSSLKNLAVLNL  268 (472)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l  268 (472)
                      .+.   ......++..+.|+.+.++.|.+..    .....|..+++|+.|+|.+|-++.....    .++.+++|+.+++
T Consensus       172 ~ga---~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  172 GGA---TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             ccH---HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            542   2233456666777777777776643    1234467788888888888877644332    3555677777777


Q ss_pred             CCCcCCCCCC
Q 040195          269 ERNNLGIGTA  278 (472)
Q Consensus       269 ~~~~~~~~~~  278 (472)
                      +.|.+...+.
T Consensus       249 ~dcll~~~Ga  258 (382)
T KOG1909|consen  249 GDCLLENEGA  258 (382)
T ss_pred             cccccccccH
Confidence            7777765443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.25  E-value=7.6e-13  Score=116.78  Aligned_cols=235  Identities=26%  Similarity=0.347  Sum_probs=173.0

Q ss_pred             CCceEEEECCCCccCcc----cCccccCCCCccEEeccCCc---CccCcc-------hhhhcCCCCCEEEccCcccCCCC
Q 040195           37 HQRVTELDLSNQRIGGV----LSPYVGNLSFLRYINLSDNG---FHGEIP-------QEIGNLYRLEKLELSNNSFSGTI  102 (472)
Q Consensus        37 ~~~l~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~~~---~~~~~~-------~~~~~l~~L~~L~L~~~~~~~~~  102 (472)
                      ...+..+++++|.+...    ..+.+.+.++|+..+++.-.   ..+..|       +++..+++|++|+||+|.+....
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            36789999999999754    44556778899999998632   222333       34567889999999999887554


Q ss_pred             Ccc----cCCCCCCcEEEcccCcCcccCCc-------------cccCCCCCcEEEccccCCCCCCC----ccccCCCCcc
Q 040195          103 PTN----LSRCSELTHLRVANNKLEGQIPK-------------EIGSLLKLQTLALYYNNLTGQLP----DFVGNLSALQ  161 (472)
Q Consensus       103 ~~~----l~~l~~L~~L~l~~~~~~~~~~~-------------~l~~l~~L~~L~l~~~~i~~~~~----~~l~~~~~L~  161 (472)
                      +..    +..+..|++|.+.+|.+......             ....-++|+++.+.+|.+-+...    ..+...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            443    46789999999999987632111             23345789999999998875433    3445678999


Q ss_pred             EEEecCCccccc----cccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccC----
Q 040195          162 VIYIRGNSLGGK----IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSL----  233 (472)
Q Consensus       162 ~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l----  233 (472)
                      ++.+..|.|...    ....+..+++|++||+.+|.+..-++   ......+...++|+++++++|.+.......|    
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs---~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS---VALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH---HHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            999999987532    23456789999999999998865542   2234456677899999999999876443322    


Q ss_pred             -cCCCCCCEEecCCCccccccccc----ccccCCCCeEEcCCCcCC
Q 040195          234 -SNASNLELLELAGNQFEGKVSID----FSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       234 -~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~  274 (472)
                       ...|.|+.+.+.+|.++......    ....+.|..|++++|.+.
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence             34799999999999987543332    445789999999999985

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.20  E-value=5.4e-12  Score=130.29  Aligned_cols=181  Identities=22%  Similarity=0.270  Sum_probs=120.5

Q ss_pred             CCCCCCCCCCCCCCCCC------CCcccccc-----eeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCc-
Q 040195            6 IPHQHDPSGVTSSWNNT------INLCQWMG-----VTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNG-   73 (472)
Q Consensus         6 ~~~~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-   73 (472)
                      .+.|||..+..+-|...      .++|--.+     ..-...+..++++.+.++.+......  ..++.|+.|-+..+. 
T Consensus       480 ~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~  557 (889)
T KOG4658|consen  480 TVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSD  557 (889)
T ss_pred             EEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecch
Confidence            47899999999999665      12222211     11123334667777777766544322  244478888888775 


Q ss_pred             -CccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCc
Q 040195           74 -FHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD  152 (472)
Q Consensus        74 -~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~  152 (472)
                       +.....+.|..++.|+.||+++|.-.+.+|..++.+-+|++|+++++.+. .+|..+.++++|.+|++..+......+.
T Consensus       558 ~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~  636 (889)
T KOG4658|consen  558 WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG  636 (889)
T ss_pred             hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc
Confidence             45455556888888999999887655578888888888888888888888 7888888888888888887765444555


Q ss_pred             cccCCCCccEEEecCCcc--ccccccccccCCCccEEEc
Q 040195          153 FVGNLSALQVIYIRGNSL--GGKIPTTLGLLRNLVYLNV  189 (472)
Q Consensus       153 ~l~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~L~~L~l  189 (472)
                      ....+++|++|.+.....  +......+.++..|+.+..
T Consensus       637 i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  637 ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            556688888888766532  2222233344445554444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=7e-12  Score=113.87  Aligned_cols=132  Identities=20%  Similarity=0.191  Sum_probs=80.2

Q ss_pred             cccEEEeecccccC-cccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCcccc-ccchhcccccCeee
Q 040195          305 TMTHFYIGGNQILG-IIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSI-PSSLGNLTKLANLE  382 (472)
Q Consensus       305 ~l~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~  382 (472)
                      .++.|.+++|.++. .....+..+|+|+.|++..|............++.|++|+|++|++.+.. -.....++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            45555555555552 12223456777888888777432232333445677888888888775321 13456778888888


Q ss_pred             ccCCcccccC-CcC-----ccCCCCCceEeecCCcccccCC--hhhhhhcccceEEEcCCCccc
Q 040195          383 LSSNSLQGNI-PLS-----VGNCQNLIGFDASHITLTGALP--QQLLSITTLSLYLDLSHNLLN  438 (472)
Q Consensus       383 l~~~~~~~~~-~~~-----~~~~~~L~~L~ls~~~~~~~~~--~~l~~~~~l~~~L~ls~n~l~  438 (472)
                      ++.|.+...- +..     ...+++|++|+++.|++. .++  ..+..+.+++ .|.+..|+++
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk-~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLK-HLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhh-hhhccccccc
Confidence            8888777432 222     355678888888888885 232  3445556666 6666666665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.2e-11  Score=112.31  Aligned_cols=210  Identities=22%  Similarity=0.237  Sum_probs=115.3

Q ss_pred             CCCCccEEeccCCcCccCcc-hhhhcCCCCCEEEccCcccCCC--CCcccCCCCCCcEEEcccCcCcccCC-ccccCCCC
Q 040195           60 NLSFLRYINLSDNGFHGEIP-QEIGNLYRLEKLELSNNSFSGT--IPTNLSRCSELTHLRVANNKLEGQIP-KEIGSLLK  135 (472)
Q Consensus        60 ~~~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~  135 (472)
                      ++.+|+++.|.++....... .....|++++.|+|+.|-+...  .......+|+|+.|+++.|.+..... ..-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45666666666665542211 2455666777777776654421  12223456677777777666541111 11124566


Q ss_pred             CcEEEccccCCCCCCC-ccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCC
Q 040195          136 LQTLALYYNNLTGQLP-DFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPN  214 (472)
Q Consensus       136 L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~  214 (472)
                      |+.|.++.|+++.... .....+|+|+.|++.+|............++.|+.|++++|.+-+.+..      ...+.+|.
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~------~~~~~l~~  272 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG------YKVGTLPG  272 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc------cccccccc
Confidence            7777777776653221 2223467777777776642212223334456677777777766444321      12345667


Q ss_pred             ccEEEccccccccc-CCcc-----CcCCCCCCEEecCCCcccccc-cccccccCCCCeEEcCCCcCCC
Q 040195          215 LKKLCIAENNFVGS-IPDS-----LSNASNLELLELAGNQFEGKV-SIDFSSLKNLAVLNLERNNLGI  275 (472)
Q Consensus       215 L~~L~l~~~~l~~~-~~~~-----l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~  275 (472)
                      |..|.++.+.+.+. .|+.     ...+++|+.|++..|++.+.. ...+..+++|+.|.+..+.++.
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            77777777766652 2222     345677777777777775321 2234556677777777776653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=1.4e-10  Score=112.07  Aligned_cols=156  Identities=33%  Similarity=0.524  Sum_probs=107.2

Q ss_pred             cccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195          305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS  384 (472)
Q Consensus       305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  384 (472)
                      +++.++++++.+..+. ..+..+++|+.|++++|.+. .++...+..+.|+.|++++|++. .++........|+++.++
T Consensus       141 nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchhhhh-hhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence            3445555555544331 34567778888888888887 44444446788888888888887 555554556668888888


Q ss_pred             CCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccc
Q 040195          385 SNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV  464 (472)
Q Consensus       385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~  464 (472)
                      +|++. ..+..+..++.+..+.+.+|++. ..+..+..++.++ .|++++|+++....  +....+++.|++++|.++..
T Consensus       218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~-~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         218 NNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE-TLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             CCcce-ecchhhhhcccccccccCCceee-eccchhccccccc-eecccccccccccc--ccccCccCEEeccCcccccc
Confidence            88644 45556777778888888888776 3466677777777 88888888875433  77778888888888887765


Q ss_pred             cCCc
Q 040195          465 IPVT  468 (472)
Q Consensus       465 ~p~~  468 (472)
                      .|..
T Consensus       293 ~~~~  296 (394)
T COG4886         293 LPLI  296 (394)
T ss_pred             chhh
Confidence            5543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.02  E-value=8.2e-12  Score=117.03  Aligned_cols=138  Identities=31%  Similarity=0.473  Sum_probs=101.5

Q ss_pred             cccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCC
Q 040195          321 HFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQ  400 (472)
Q Consensus       321 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  400 (472)
                      +..+..+..|..++|+.|++. ..|..+.. -.|+.|.+++|+++ .+|+.++..+.|..|+.+.|.+. .+|..+..+.
T Consensus       114 p~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~  189 (722)
T KOG0532|consen  114 PEAICNLEALTFLDLSSNQLS-HLPDGLCD-LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT  189 (722)
T ss_pred             chhhhhhhHHHHhhhccchhh-cCChhhhc-CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH
Confidence            335566667777777777776 44544443 35778888888887 67777777788888888888877 6777777888


Q ss_pred             CCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCC
Q 040195          401 NLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPV  467 (472)
Q Consensus       401 ~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~  467 (472)
                      +|+.|++..|++. .+|..+..+ .|. .||+|+|++. .+|.+|.+++.|++|.|.+|++. ..|.
T Consensus       190 slr~l~vrRn~l~-~lp~El~~L-pLi-~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPA  251 (722)
T KOG0532|consen  190 SLRDLNVRRNHLE-DLPEELCSL-PLI-RLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPA  251 (722)
T ss_pred             HHHHHHHhhhhhh-hCCHHHhCC-cee-eeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChH
Confidence            8888888888887 577777743 455 6888888887 67888888888888888888875 4443

>PLN03150 hypothetical protein; Provisional

Probab=99.02  E-value=1.5e-09  Score=109.89  Aligned_cols=127  Identities=33%  Similarity=0.592  Sum_probs=78.7

Q ss_pred             CCCCCCCCcc----cccceeeCCCC----CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCC
Q 040195           17 SSWNNTINLC----QWMGVTCGHRH----QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRL   88 (472)
Q Consensus        17 ~~~~~~~~~~----~~~~~~~~~~~----~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L   88 (472)
                      ..|.. ..|+    .|.|+.|....    ..++.|+++++.+.+..+..+..+++|+.|+|++|.+.+..|..+..+++|
T Consensus       390 ~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L  468 (623)
T PLN03150        390 FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL  468 (623)
T ss_pred             CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence            37964 3553    79999995221    236667777776666666666666666666666666665666666666666


Q ss_pred             CEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCC-CCCcEEEcccc
Q 040195           89 EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSL-LKLQTLALYYN  144 (472)
Q Consensus        89 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~  144 (472)
                      +.|++++|.+.+..|..+.++++|++|++++|.+.+..|..+... .++..+++.+|
T Consensus       469 ~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            666666666665666666666666666666666665555554432 23444554444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=2.5e-10  Score=94.61  Aligned_cols=82  Identities=26%  Similarity=0.376  Sum_probs=18.8

Q ss_pred             CCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccc-cCCCCccEEEecCCccccc-cccccccCCCccEE
Q 040195          110 SELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFV-GNLSALQVIYIRGNSLGGK-IPTTLGLLRNLVYL  187 (472)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l-~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L  187 (472)
                      .+|+.|++++|.++..  +.+..++.|++|++++|.+++ ....+ ..+++|++|++++|++... ....++.+++|++|
T Consensus        42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            3444444444444311  223334444444444444432 11112 1234444444444443311 11233344444444


Q ss_pred             EccCCcc
Q 040195          188 NVNENQF  194 (472)
Q Consensus       188 ~l~~~~l  194 (472)
                      ++.+|++
T Consensus       119 ~L~~NPv  125 (175)
T PF14580_consen  119 SLEGNPV  125 (175)
T ss_dssp             E-TT-GG
T ss_pred             eccCCcc
Confidence            4444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.95  E-value=1.1e-09  Score=90.86  Aligned_cols=85  Identities=25%  Similarity=0.320  Sum_probs=18.1

Q ss_pred             CCCCCcEEEcccCcCcccCCcccc-CCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccccccccc-ccCCCcc
Q 040195          108 RCSELTHLRVANNKLEGQIPKEIG-SLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTL-GLLRNLV  185 (472)
Q Consensus       108 ~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~  185 (472)
                      +..++++|+++++.++..  +.+. .+.+|+.|++++|.+.. + +.+..+++|++|++++|.++.. ...+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence            344556666666665521  2333 34556666666666552 2 2344555566666666655532 2222 2455555


Q ss_pred             EEEccCCccccc
Q 040195          186 YLNVNENQFWYV  197 (472)
Q Consensus       186 ~L~l~~~~l~~~  197 (472)
                      +|.+++|++.++
T Consensus        92 ~L~L~~N~I~~l  103 (175)
T PF14580_consen   92 ELYLSNNKISDL  103 (175)
T ss_dssp             EEE-TTS---SC
T ss_pred             EEECcCCcCCCh
Confidence            555555555333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=2.1e-10  Score=99.44  Aligned_cols=131  Identities=24%  Similarity=0.248  Sum_probs=104.7

Q ss_pred             cCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCce
Q 040195          325 RNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIG  404 (472)
Q Consensus       325 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  404 (472)
                      .....|+++|+++|.|+ .+-+.+.-.|.++.|+++.|.+....  .+..+++|..|++++|.++ .+..+-..+-+.++
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            34567899999999888 44455566799999999999987333  3778899999999999988 56667777889999


Q ss_pred             EeecCCcccccCChhhhhhcccceEEEcCCCccccc-ccccccCCCCCceEeccCCeec
Q 040195          405 FDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGS-LLLQVGNLKNLILLDISGNQFS  462 (472)
Q Consensus       405 L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~-~~~~l~~~~~L~~L~L~~n~~~  462 (472)
                      |.+++|.+.+  ...+..+-++. .||+++|+|... -...+.+++-|+.+.|.+|++.
T Consensus       357 L~La~N~iE~--LSGL~KLYSLv-nLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  357 LKLAQNKIET--LSGLRKLYSLV-NLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eehhhhhHhh--hhhhHhhhhhe-eccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            9999998862  45577788888 999999998743 2256788899999999999986

>PLN03150 hypothetical protein; Provisional

Probab=98.91  E-value=2.5e-09  Score=108.43  Aligned_cols=106  Identities=31%  Similarity=0.477  Sum_probs=50.5

Q ss_pred             CcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcC
Q 040195          354 LQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLS  433 (472)
Q Consensus       354 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls  433 (472)
                      ++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+ .|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~-~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR-ILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC-EEECc
Confidence            34444444444444444444444555555555544444444444445555555555554444444444444444 45555


Q ss_pred             CCcccccccccccCC-CCCceEeccCCe
Q 040195          434 HNLLNGSLLLQVGNL-KNLILLDISGNQ  460 (472)
Q Consensus       434 ~n~l~~~~~~~l~~~-~~L~~L~L~~n~  460 (472)
                      +|++++.+|..+... .++..+++++|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            554444444444322 234444444444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.90  E-value=1.1e-09  Score=113.36  Aligned_cols=131  Identities=24%  Similarity=0.283  Sum_probs=91.6

Q ss_pred             CCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcc--cCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCc
Q 040195           60 NLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS--FSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQ  137 (472)
Q Consensus        60 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  137 (472)
                      .....|...+.++.+.. .+.. ..+++|++|-+..+.  +.......|..++.|++||+++|.-...+|..++.+-+||
T Consensus       521 ~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             chhheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            34566777777666542 2222 234578888877774  4434445577788888888887766567888888888888


Q ss_pred             EEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCc
Q 040195          138 TLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ  193 (472)
Q Consensus       138 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  193 (472)
                      .|+++++.+. .+|..+.++.+|.+|++..+......+.....+++|++|.+....
T Consensus       599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            8888888887 788888888888888888765443445555668888888876654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=6.5e-10  Score=96.47  Aligned_cols=205  Identities=21%  Similarity=0.189  Sum_probs=132.8

Q ss_pred             cCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCc-CcccCCccccC
Q 040195           54 LSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNK-LEGQIPKEIGS  132 (472)
Q Consensus        54 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~  132 (472)
                      ++-.+..+++|..+.++.+.-..+ -+....=|.|+++...+..+.. .| .+--...+.....+.-. .++.....+.-
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dT  282 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSADT  282 (490)
T ss_pred             cccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecch
Confidence            334455677777777777654321 1222333667777776654431 11 12112222222121111 11111122333


Q ss_pred             CCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCC
Q 040195          133 LLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNL  212 (472)
Q Consensus       133 l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~  212 (472)
                      .+.|+++++++|.|+ .+.....-.|+++.|+++.|.+..  .+.++.+++|+.|++++|.+..+..+        -..+
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~~~Gw--------h~KL  351 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAECVGW--------HLKL  351 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhHhhhhh--------Hhhh
Confidence            467999999999987 555656667899999999999863  34588889999999999987555432        2356


Q ss_pred             CCccEEEcccccccccCCccCcCCCCCCEEecCCCccccc-ccccccccCCCCeEEcCCCcCC
Q 040195          213 PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGK-VSIDFSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       213 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~  274 (472)
                      .+++.|.+.+|.+.+.  ..++++-+|..|++++|++... ....++++|.|+.+.+.+|++.
T Consensus       352 GNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  352 GNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             cCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            7899999999988642  3467788889999999988643 2346889999999999999886

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.88  E-value=3.7e-09  Score=102.31  Aligned_cols=194  Identities=33%  Similarity=0.523  Sum_probs=144.6

Q ss_pred             EEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCC-CCcEEEcccCcCcccCCccccCCCCCcEEEcccc
Q 040195           66 YINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCS-ELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYN  144 (472)
Q Consensus        66 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  144 (472)
                      .+....+.+. .....+..+..++.|++.++.+. ..+....... +|+.|+++++.+. ..+..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4666666653 23344566688999999999888 5555566664 8999999999987 55567888999999999999


Q ss_pred             CCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccc
Q 040195          145 NLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENN  224 (472)
Q Consensus       145 ~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (472)
                      .+. ..+......+.|+.|++++|++. ..+........|+++.+++|+....        ...+....++..+.+.++.
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~--------~~~~~~~~~l~~l~l~~n~  243 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIEL--------LSSLSNLKNLSGLELSNNK  243 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceec--------chhhhhcccccccccCCce
Confidence            998 56655557889999999999987 4555555566799999999852111        1223456777777788887


Q ss_pred             ccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCC
Q 040195          225 FVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGI  275 (472)
Q Consensus       225 l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  275 (472)
                      +.. .+..++.++.++.|++++|.++....  +..+.+++.|+++++.+..
T Consensus       244 ~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         244 LED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             eee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccc
Confidence            763 25667788889999999999975444  7888999999999988753

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.84  E-value=1.1e-10  Score=109.53  Aligned_cols=170  Identities=31%  Similarity=0.491  Sum_probs=96.4

Q ss_pred             cEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEcccc
Q 040195           65 RYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYN  144 (472)
Q Consensus        65 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  144 (472)
                      ...+++.|.+. .+|..+..+..|+.+.++.|.+. ..|..+.++..|++++++.|.+. .+|..++.+ -|+.|.+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecC
Confidence            34555555555 44555555555666666666555 45555666666666666666655 455555544 3566666666


Q ss_pred             CCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccc
Q 040195          145 NLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENN  224 (472)
Q Consensus       145 ~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (472)
                      +++ .+|..++..++|..|+.+.|.+. ..+..++.+.+|+.|++..|++.       .+|.+..  .-.|..||++.|+
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-------~lp~El~--~LpLi~lDfScNk  222 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-------DLPEELC--SLPLIRLDFSCNK  222 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-------hCCHHHh--CCceeeeecccCc
Confidence            665 55555555566666666666655 44555566666666666666552       2232222  2235566666666


Q ss_pred             ccccCCccCcCCCCCCEEecCCCccc
Q 040195          225 FVGSIPDSLSNASNLELLELAGNQFE  250 (472)
Q Consensus       225 l~~~~~~~l~~~~~L~~L~l~~~~~~  250 (472)
                      +. .+|-.|.++..|++|-|.+|.+.
T Consensus       223 is-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ee-ecchhhhhhhhheeeeeccCCCC
Confidence            55 34555666666666666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=4.8e-09  Score=71.35  Aligned_cols=59  Identities=37%  Similarity=0.523  Sum_probs=25.9

Q ss_pred             CcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCc
Q 040195          329 NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNS  387 (472)
Q Consensus       329 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~  387 (472)
                      +|++|++++|.+....+.+|..+++|++|++++|.+....+.+|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444443333344444444444444444443333444444444444444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=1.3e-08  Score=69.18  Aligned_cols=61  Identities=38%  Similarity=0.410  Sum_probs=42.3

Q ss_pred             CCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcc
Q 040195          352 KNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITL  412 (472)
Q Consensus       352 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~  412 (472)
                      ++|++|++++|++....+..|..+++|++|++++|.++...+.++..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4567777777777655556677777777777777777755566677777777777777654

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2.6e-10  Score=98.78  Aligned_cols=86  Identities=26%  Similarity=0.201  Sum_probs=52.2

Q ss_pred             CccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCC-cccccccc-ccccc
Q 040195          183 NLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGN-QFEGKVSI-DFSSL  260 (472)
Q Consensus       183 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~-~l~~l  260 (472)
                      .|+++|++...+.      .+.....+.+|.+|+.|.+.+..+.+.+...++...+|+.++++++ .++..... .+.++
T Consensus       186 Rlq~lDLS~s~it------~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc  259 (419)
T KOG2120|consen  186 RLQHLDLSNSVIT------VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC  259 (419)
T ss_pred             hhHHhhcchhhee------HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence            4666666665432      1112234556677777777777777666666777777777777775 33322221 35667


Q ss_pred             CCCCeEEcCCCcCC
Q 040195          261 KNLAVLNLERNNLG  274 (472)
Q Consensus       261 ~~L~~L~l~~~~~~  274 (472)
                      ..|..|+++-|...
T Consensus       260 s~L~~LNlsWc~l~  273 (419)
T KOG2120|consen  260 SRLDELNLSWCFLF  273 (419)
T ss_pred             hhHhhcCchHhhcc
Confidence            77777777777654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.63  E-value=5.4e-09  Score=101.33  Aligned_cols=81  Identities=25%  Similarity=0.295  Sum_probs=38.6

Q ss_pred             cceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccccc---CCcC-ccCCCCCceE
Q 040195          330 LIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGN---IPLS-VGNCQNLIGF  405 (472)
Q Consensus       330 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~-~~~~~~L~~L  405 (472)
                      |+.+++++|.+.. .+..+..+..+..|++.++++...  ..+...+.+..+....+++...   .... ....+.++.+
T Consensus       234 L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            5566666665552 223344555666666666655421  1233344455555555544311   1111 3344555666


Q ss_pred             eecCCccc
Q 040195          406 DASHITLT  413 (472)
Q Consensus       406 ~ls~~~~~  413 (472)
                      .+.++++.
T Consensus       311 ~~~~~~~~  318 (414)
T KOG0531|consen  311 TLELNPIR  318 (414)
T ss_pred             ccccCccc
Confidence            66665554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1e-09  Score=95.16  Aligned_cols=59  Identities=29%  Similarity=0.314  Sum_probs=32.6

Q ss_pred             CCcEEEccccCCCC-CCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCc
Q 040195          135 KLQTLALYYNNLTG-QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ  193 (472)
Q Consensus       135 ~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  193 (472)
                      .|+++|+++..++. .+-..+..+.+|+.|.+.++++.+.+...++....|+.++++.+.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s  245 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS  245 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence            46666666655541 122223445666666666666665555556666666666666553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.55  E-value=2.5e-08  Score=85.60  Aligned_cols=234  Identities=23%  Similarity=0.246  Sum_probs=154.1

Q ss_pred             CCceEEEECCCCccCcccC----ccccCCCCccEEeccCCcC---cc-------CcchhhhcCCCCCEEEccCcccCCCC
Q 040195           37 HQRVTELDLSNQRIGGVLS----PYVGNLSFLRYINLSDNGF---HG-------EIPQEIGNLYRLEKLELSNNSFSGTI  102 (472)
Q Consensus        37 ~~~l~~L~l~~~~~~~~~~----~~l~~~~~L~~L~L~~~~~---~~-------~~~~~~~~l~~L~~L~L~~~~~~~~~  102 (472)
                      ...+..++++||.|.....    ..+.+-++|+..+++.-..   .+       .+..++.+||+|+.++|+.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            3678899999999976533    4455668889888876321   11       23345678999999999999887655


Q ss_pred             Cc----ccCCCCCCcEEEcccCcCcccCCcc-------------ccCCCCCcEEEccccCCCCCCCcc-----ccCCCCc
Q 040195          103 PT----NLSRCSELTHLRVANNKLEGQIPKE-------------IGSLLKLQTLALYYNNLTGQLPDF-----VGNLSAL  160 (472)
Q Consensus       103 ~~----~l~~l~~L~~L~l~~~~~~~~~~~~-------------l~~l~~L~~L~l~~~~i~~~~~~~-----l~~~~~L  160 (472)
                      |.    .++....|++|.+++|.+....-..             ..+-|.|+++.+..|++- ..+..     +..-..|
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l  187 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL  187 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence            54    3567789999999998775321111             223478999999988876 33322     2233688


Q ss_pred             cEEEecCCccccccc-----cccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccC--
Q 040195          161 QVIYIRGNSLGGKIP-----TTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSL--  233 (472)
Q Consensus       161 ~~L~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l--  233 (472)
                      +++.+..|.|.-...     -.+..+.+|+.|++.+|.++..++   .+....+..-+.|++|.+..|.++....+.+  
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS---~~La~al~~W~~lrEL~lnDClls~~G~~~v~~  264 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS---RYLADALCEWNLLRELRLNDCLLSNEGVKSVLR  264 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH---HHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence            999999888753322     233567899999999998765542   2233444445668899999988765433222  


Q ss_pred             ----cCCCCCCEEecCCCccccccccc--c-----cccCCCCeEEcCCCcCC
Q 040195          234 ----SNASNLELLELAGNQFEGKVSID--F-----SSLKNLAVLNLERNNLG  274 (472)
Q Consensus       234 ----~~~~~L~~L~l~~~~~~~~~~~~--l-----~~l~~L~~L~l~~~~~~  274 (472)
                          -..|+|..|...+|...+.....  +     ...|-|..+.+.+|++.
T Consensus       265 ~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         265 RFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             HhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence                23578888888888665332221  1     23566777777777764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.50  E-value=1e-08  Score=99.37  Aligned_cols=82  Identities=28%  Similarity=0.322  Sum_probs=40.6

Q ss_pred             ccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccc---cc-cchhcccccCee
Q 040195          306 MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS---IP-SSLGNLTKLANL  381 (472)
Q Consensus       306 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~-~~l~~~~~L~~L  381 (472)
                      ++.++++++.+.... ..+..+..+..+++.++.+...  ..+...+.+..+....+.+...   .. ......+.++.+
T Consensus       234 L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            445555555554321 2344556666666666665532  1223344455555555554311   11 113445666666


Q ss_pred             eccCCcccc
Q 040195          382 ELSSNSLQG  390 (472)
Q Consensus       382 ~l~~~~~~~  390 (472)
                      .+..+++..
T Consensus       311 ~~~~~~~~~  319 (414)
T KOG0531|consen  311 TLELNPIRK  319 (414)
T ss_pred             ccccCcccc
Confidence            776666553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=3.7e-08  Score=75.65  Aligned_cols=128  Identities=20%  Similarity=0.271  Sum_probs=66.0

Q ss_pred             cceEeccccccccCcch---hhcCCCCCcEEEccCCcCccccccchh-cccccCeeeccCCcccccCCcCccCCCCCceE
Q 040195          330 LIALGMQSNQLHGTIPD---VIGELKNLQILSLFGNFLHGSIPSSLG-NLTKLANLELSSNSLQGNIPLSVGNCQNLIGF  405 (472)
Q Consensus       330 L~~L~l~~~~i~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  405 (472)
                      +..++|+.|++. .+++   .+.....|+..+|++|.+. .+|..|. .++.++.|++++|.+. .+|..+..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            344455555444 2222   2233344555566666665 3333333 3456666666666666 555556666666666


Q ss_pred             eecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195          406 DASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG  463 (472)
Q Consensus       406 ~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~  463 (472)
                      ++++|++. ..|+-+..+.++. .|+.-+|.+. .++.++-.-...-.+++.++++.+
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~-~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~  160 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLD-MLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGD  160 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHH-HhcCCCCccc-cCcHHHhccccHHHHHhcCCcccc
Confidence            66666666 5566666666655 6666666554 222222222333334445555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.31  E-value=1.6e-07  Score=80.79  Aligned_cols=148  Identities=22%  Similarity=0.192  Sum_probs=88.6

Q ss_pred             ccccCCCCCcEEEccccCCCCCCCc----cccCCCCccEEEecCCcccccc-------------ccccccCCCccEEEcc
Q 040195          128 KEIGSLLKLQTLALYYNNLTGQLPD----FVGNLSALQVIYIRGNSLGGKI-------------PTTLGLLRNLVYLNVN  190 (472)
Q Consensus       128 ~~l~~l~~L~~L~l~~~~i~~~~~~----~l~~~~~L~~L~l~~~~~~~~~-------------~~~l~~~~~L~~L~l~  190 (472)
                      .++.+||+|+.++++.|.+....|.    .++..+.|++|.+++|.+.-..             ..-...-|.|+++...
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            3455566666666666655544332    2344566677777666543110             0112345778888888


Q ss_pred             CCccccccccccccChhhhcCCCCccEEEccccccccc-----CCccCcCCCCCCEEecCCCccccccccc----ccccC
Q 040195          191 ENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGS-----IPDSLSNASNLELLELAGNQFEGKVSID----FSSLK  261 (472)
Q Consensus       191 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~----l~~l~  261 (472)
                      .|++...+.   ......+....+|+.+.+.+|.+...     ....++.+.+|+.|+++.|-++-.....    ++.-+
T Consensus       166 rNRlengs~---~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~  242 (388)
T COG5238         166 RNRLENGSK---ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN  242 (388)
T ss_pred             cchhccCcH---HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence            888755432   22223344456888888888876532     1123467788999999998776544333    33445


Q ss_pred             CCCeEEcCCCcCCCCCC
Q 040195          262 NLAVLNLERNNLGIGTA  278 (472)
Q Consensus       262 ~L~~L~l~~~~~~~~~~  278 (472)
                      .|+.|++..|-++..+.
T Consensus       243 ~lrEL~lnDClls~~G~  259 (388)
T COG5238         243 LLRELRLNDCLLSNEGV  259 (388)
T ss_pred             hhhhccccchhhccccH
Confidence            68888888888765444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=2e-07  Score=81.28  Aligned_cols=113  Identities=22%  Similarity=0.286  Sum_probs=66.1

Q ss_pred             ccCCCCCcEEEccccCCCCCCCcc-c-cCCCCccEEEecCCcccc--ccccccccCCCccEEEccCCccccccccccccC
Q 040195          130 IGSLLKLQTLALYYNNLTGQLPDF-V-GNLSALQVIYIRGNSLGG--KIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLP  205 (472)
Q Consensus       130 l~~l~~L~~L~l~~~~i~~~~~~~-l-~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~  205 (472)
                      +.....++.+.+.++.|..+.... + ..++.++++++.+|.+.+  .+...+.++|.|+.|+++.|.+...-   +.+|
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I---~~lp  117 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI---KSLP  117 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc---ccCc
Confidence            334445666777777666433211 2 246778888888887762  22234467888888888888753221   2222


Q ss_pred             hhhhcCCCCccEEEccccccccc-CCccCcCCCCCCEEecCCCcc
Q 040195          206 FDILVNLPNLKKLCIAENNFVGS-IPDSLSNASNLELLELAGNQF  249 (472)
Q Consensus       206 ~~~~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~  249 (472)
                          ....+|+.|.+.+..+.-. ....+..+|.+++|+++.|.+
T Consensus       118 ----~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  118 ----LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             ----ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence                1445777777777665431 122345667777777777644

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=4.1e-07  Score=79.35  Aligned_cols=187  Identities=18%  Similarity=0.170  Sum_probs=114.6

Q ss_pred             hcCCCCCEEEccCcccCC--CCCcccCCCCCCcEEEcccCcCcccCCccc-cCCCCCcEEEccccCCCCC-CCccccCCC
Q 040195           83 GNLYRLEKLELSNNSFSG--TIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQ-LPDFVGNLS  158 (472)
Q Consensus        83 ~~l~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~i~~~-~~~~l~~~~  158 (472)
                      ..+..+++++|.+|.+.+  +....+.++|+|++|+++.|++... ...+ ....+|++|.+.++.+... ....+..+|
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            346678888888887763  1223356788888888888877632 2222 3556788888887776533 233445667


Q ss_pred             CccEEEecCCcccccc--ccccccC-CCccEEEccCCccccccccccccChhhhcCCCCccEEEccccccccc-CCccCc
Q 040195          159 ALQVIYIRGNSLGGKI--PTTLGLL-RNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGS-IPDSLS  234 (472)
Q Consensus       159 ~L~~L~l~~~~~~~~~--~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~l~  234 (472)
                      .+++|.++.|.+....  ....... +.++++....|........     -.....+|++..+.+..|++.+. ..+.+.
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~-----~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se  221 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK-----NKLSRIFPNVNSVFVCEGPLKTESSEKGSE  221 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH-----HhHHhhcccchheeeecCcccchhhcccCC
Confidence            7777777777433111  1112211 2455555555532111000     01122468888888888887653 345566


Q ss_pred             CCCCCCEEecCCCcccccc-cccccccCCCCeEEcCCCcCCC
Q 040195          235 NASNLELLELAGNQFEGKV-SIDFSSLKNLAVLNLERNNLGI  275 (472)
Q Consensus       235 ~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~  275 (472)
                      .+|.+--|+++.+++.+.. .+.+..+++|..|+++++++..
T Consensus       222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            7788888999998886542 3357888999999999998863

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.25  E-value=1.9e-08  Score=97.56  Aligned_cols=126  Identities=30%  Similarity=0.337  Sum_probs=63.5

Q ss_pred             CcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeec
Q 040195          329 NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS  408 (472)
Q Consensus       329 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls  408 (472)
                      .|...+++.|.+. ..-..+.-++.|+.|+|++|++.+..  .+..++.|++|+|+.|.+...-......|. |..|+++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            3444555555544 22233444556666666666665322  455566666666666665522222222333 6666666


Q ss_pred             CCcccccCChhhhhhcccceEEEcCCCccccc-ccccccCCCCCceEeccCCee
Q 040195          409 HITLTGALPQQLLSITTLSLYLDLSHNLLNGS-LLLQVGNLKNLILLDISGNQF  461 (472)
Q Consensus       409 ~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~-~~~~l~~~~~L~~L~L~~n~~  461 (472)
                      +|.++ + ...+.++.+|+ -||+++|-+.+- -..-+..+.+|+.|.|.||++
T Consensus       241 nN~l~-t-L~gie~LksL~-~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALT-T-LRGIENLKSLY-GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHH-h-hhhHHhhhhhh-ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            66654 2 23455556666 666666655431 112223334566666666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.22  E-value=3.6e-08  Score=89.68  Aligned_cols=134  Identities=24%  Similarity=0.245  Sum_probs=75.7

Q ss_pred             CccCcceEeccccc-cccCcchhh-cCCCCCcEEEccCCc-Cccccccchh-cccccCeeeccCCcccc--cCCcCccCC
Q 040195          326 NLVNLIALGMQSNQ-LHGTIPDVI-GELKNLQILSLFGNF-LHGSIPSSLG-NLTKLANLELSSNSLQG--NIPLSVGNC  399 (472)
Q Consensus       326 ~~~~L~~L~l~~~~-i~~~~~~~~-~~~~~L~~L~L~~n~-l~~~~~~~l~-~~~~L~~L~l~~~~~~~--~~~~~~~~~  399 (472)
                      .+..|+.++.+++. +.+....++ ..+.+|+.+.++.|+ +++.-...+. .++.|+.+++.+|....  .+.....+|
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            35566777776653 332222222 345777777777775 3332222232 45677777777775442  233444567


Q ss_pred             CCCceEeecCCcc-cccCC----hhhhhhcccceEEEcCCC-cccccccccccCCCCCceEeccCCe
Q 040195          400 QNLIGFDASHITL-TGALP----QQLLSITTLSLYLDLSHN-LLNGSLLLQVGNLKNLILLDISGNQ  460 (472)
Q Consensus       400 ~~L~~L~ls~~~~-~~~~~----~~l~~~~~l~~~L~ls~n-~l~~~~~~~l~~~~~L~~L~L~~n~  460 (472)
                      +.|+.+.+++|.. ++.-.    ..-.+...+. .+.++++ .+++...+.+..+++|+.+++-++.
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~-~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE-VLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccc-eeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            7777777777743 32211    1123344455 6777776 4455566667777777777777663

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.21  E-value=2.7e-08  Score=90.48  Aligned_cols=157  Identities=17%  Similarity=0.086  Sum_probs=74.2

Q ss_pred             CCcEEEcccCcCccc--CCccccCCCCCcEEEccccC-CCCCCCcccc-CCCCccEEEecCC-cccccccccc-ccCCCc
Q 040195          111 ELTHLRVANNKLEGQ--IPKEIGSLLKLQTLALYYNN-LTGQLPDFVG-NLSALQVIYIRGN-SLGGKIPTTL-GLLRNL  184 (472)
Q Consensus       111 ~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~-i~~~~~~~l~-~~~~L~~L~l~~~-~~~~~~~~~l-~~~~~L  184 (472)
                      .|+.|.+.++.-.+.  .-....++|++++|.+.++. +++.....++ .+++|+++++..| .++......+ ..+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            566677776654321  11233456777777777664 2222222222 4677777777774 3443333322 356777


Q ss_pred             cEEEccCCccccccccccccChhhhcCCCCccEEEccccccccc--CCccCcCCCCCCEEecCCC-cccccccccc-ccc
Q 040195          185 VYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGS--IPDSLSNASNLELLELAGN-QFEGKVSIDF-SSL  260 (472)
Q Consensus       185 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l-~~l  260 (472)
                      +++++++++--.     +.-......++..++.+.+.||.-.+.  +...=+.++.+.++++..+ .+++.....+ ..+
T Consensus       219 ~~lNlSwc~qi~-----~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  219 KYLNLSWCPQIS-----GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             HHhhhccCchhh-----cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence            777777775211     111112334455555665555432110  0001134455555555554 2232221111 234


Q ss_pred             CCCCeEEcCCCc
Q 040195          261 KNLAVLNLERNN  272 (472)
Q Consensus       261 ~~L~~L~l~~~~  272 (472)
                      ..|+.+..+++.
T Consensus       294 ~~lq~l~~s~~t  305 (483)
T KOG4341|consen  294 HALQVLCYSSCT  305 (483)
T ss_pred             hHhhhhcccCCC
Confidence            555666555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.18  E-value=1.2e-08  Score=99.03  Aligned_cols=178  Identities=24%  Similarity=0.262  Sum_probs=81.3

Q ss_pred             CccccCCCCccEEeccCCcCccCcchhhhcC-CCCCEEEccCcc--cC-------CCCCcccCCCCCCcEEEcccCcCcc
Q 040195           55 SPYVGNLSFLRYINLSDNGFHGEIPQEIGNL-YRLEKLELSNNS--FS-------GTIPTNLSRCSELTHLRVANNKLEG  124 (472)
Q Consensus        55 ~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~L~~~~--~~-------~~~~~~l~~l~~L~~L~l~~~~~~~  124 (472)
                      +-.+..|++||+|.+.++++..  ..++..+ .+|++|...+.-  +.       +.....+. --.|.+.+++.|.+. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV-  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH-
Confidence            4556778889999998887653  1222222 234444333210  00       00000000 024445555555554 


Q ss_pred             cCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccc-cccCCCccEEEccCCccccccccccc
Q 040195          125 QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTT-LGLLRNLVYLNVNENQFWYVSSFSGS  203 (472)
Q Consensus       125 ~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~  203 (472)
                      .+...+.-++.|++|++++|+++..  ..+..+++|++|++++|.+. .+|.. ...+ +|+.|++++|.++..-+    
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL~g----  249 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTLRG----  249 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhhhh----
Confidence            3334444455566666666655422  24555556666666665554 22211 1112 25555555555432211    


Q ss_pred             cChhhhcCCCCccEEEcccccccccC-CccCcCCCCCCEEecCCCcc
Q 040195          204 LPFDILVNLPNLKKLCIAENNFVGSI-PDSLSNASNLELLELAGNQF  249 (472)
Q Consensus       204 ~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~  249 (472)
                           +.++.+|+.||+++|-+.+.- ...+..+..|+.|.+.+|++
T Consensus       250 -----ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  250 -----IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             -----HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence                 224455555555555544311 01123344455555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.13  E-value=1.3e-07  Score=72.69  Aligned_cols=137  Identities=15%  Similarity=0.190  Sum_probs=100.7

Q ss_pred             cccEEEeecccccCc--ccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeee
Q 040195          305 TMTHFYIGGNQILGI--IHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLE  382 (472)
Q Consensus       305 ~l~~l~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~  382 (472)
                      .+..+++++|.+..+  ....+.....|...+|++|.+.+..+..-.+++.++.|++++|.+. .+|+.+..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            456778888877643  2334566678889999999999666666667789999999999998 6777799999999999


Q ss_pred             ccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccc
Q 040195          383 LSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV  445 (472)
Q Consensus       383 l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l  445 (472)
                      ++.|++. ..|..+..+.+|-.|+..+|... .++-.+...+..- ...+.++.+.+.-+..+
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~a-l~~lgnepl~~~~~~kl  166 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPA-LIKLGNEPLGDETKKKL  166 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHH-HHHhcCCcccccCcccc
Confidence            9999998 56666777889999999999876 5554433322222 34555566665444333

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.90  E-value=2e-05  Score=65.11  Aligned_cols=107  Identities=21%  Similarity=0.198  Sum_probs=82.5

Q ss_pred             cccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccc-cccchhcccccCeeec
Q 040195          305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS-IPSSLGNLTKLANLEL  383 (472)
Q Consensus       305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l  383 (472)
                      +...+++++|.+...  ..|..++.|.+|.+.+|.|+...|..-..+++|+.|.+.+|.+... ....+..+|.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            567788888887754  3577889999999999999977776656678999999999987532 2335678899999999


Q ss_pred             cCCcccccCC---cCccCCCCCceEeecCCccc
Q 040195          384 SSNSLQGNIP---LSVGNCQNLIGFDASHITLT  413 (472)
Q Consensus       384 ~~~~~~~~~~---~~~~~~~~L~~L~ls~~~~~  413 (472)
                      -+|+++..-.   ..+..+|+|+.||+++-.-.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            9999885422   23567899999999987553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.90  E-value=2.7e-06  Score=86.40  Aligned_cols=134  Identities=22%  Similarity=0.284  Sum_probs=72.2

Q ss_pred             CceEEEECCCCc-cCcccCcccc-CCCCccEEeccCCcCcc-CcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcE
Q 040195           38 QRVTELDLSNQR-IGGVLSPYVG-NLSFLRYINLSDNGFHG-EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTH  114 (472)
Q Consensus        38 ~~l~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~  114 (472)
                      .++++|+++|.. +....+..++ .+|+|+.|.+.+-.+.. .......++|+|..||+++++++..  ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            556677776643 3333333333 45677777776654432 2233445667777777777766533  45666677777


Q ss_pred             EEcccCcCcc-cCCccccCCCCCcEEEccccCCCCCC------CccccCCCCccEEEecCCccccc
Q 040195          115 LRVANNKLEG-QIPKEIGSLLKLQTLALYYNNLTGQL------PDFVGNLSALQVIYIRGNSLGGK  173 (472)
Q Consensus       115 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~i~~~~------~~~l~~~~~L~~L~l~~~~~~~~  173 (472)
                      |.+.+-.+.. .....+.++++|++||++........      .+.-..+|.|+.|+.+++.+.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            6666655542 22234556677777777654433111      01112356666666666655543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=1.5e-05  Score=49.41  Aligned_cols=37  Identities=41%  Similarity=0.510  Sum_probs=21.3

Q ss_pred             ccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195          425 TLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG  463 (472)
Q Consensus       425 ~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~  463 (472)
                      +|+ +|++++|++++ ++..+.++++|+.|++++|++++
T Consensus         2 ~L~-~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLE-ELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-S-EEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cce-EEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence            344 66666666663 34446666666666666666653

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.83  E-value=6e-05  Score=60.10  Aligned_cols=123  Identities=15%  Similarity=0.162  Sum_probs=47.1

Q ss_pred             ccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCC
Q 040195          322 FGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQN  401 (472)
Q Consensus       322 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  401 (472)
                      ..|..+++|+.+.+.+ .+......+|..+++|+.+.+.++ +......+|..++.|+.+.+.+ .+.......+..++.
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3455556666666653 344344445666666666666554 4333444555555666666654 332223344555666


Q ss_pred             CceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCC
Q 040195          402 LIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNL  451 (472)
Q Consensus       402 L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L  451 (472)
                      |+.+.+..+ +...-...+.++ .++ .+.+.+ .+.......|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~-~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLK-EINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T---EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-Cce-EEEECC-CccEECCccccccccC
Confidence            666666543 321112334443 555 555554 2222334555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.77  E-value=8.8e-05  Score=59.14  Aligned_cols=60  Identities=18%  Similarity=0.231  Sum_probs=20.1

Q ss_pred             cccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcc
Q 040195           57 YVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVA  118 (472)
Q Consensus        57 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~  118 (472)
                      .|..+.+|+.+.+.. .+..+...+|.++++|+.+.+.++ +.......|..++.++.+.+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            344444444444442 222233334444444444444432 222223334444444444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=0.0001  Score=69.21  Aligned_cols=31  Identities=19%  Similarity=0.232  Sum_probs=14.5

Q ss_pred             CCCCCEEecCCCcccccccccccccC-CCCeEEcCCC
Q 040195          236 ASNLELLELAGNQFEGKVSIDFSSLK-NLAVLNLERN  271 (472)
Q Consensus       236 ~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~  271 (472)
                      +.+++.|++++|.++     .+..+| +|+.|.+++|
T Consensus        51 ~~~l~~L~Is~c~L~-----sLP~LP~sLtsL~Lsnc   82 (426)
T PRK15386         51 ARASGRLYIKDCDIE-----SLPVLPNELTEITIENC   82 (426)
T ss_pred             hcCCCEEEeCCCCCc-----ccCCCCCCCcEEEccCC
Confidence            355555555555322     333333 3555555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.73  E-value=7.1e-05  Score=61.99  Aligned_cols=12  Identities=17%  Similarity=0.296  Sum_probs=5.6

Q ss_pred             cCCCCCCEEecC
Q 040195          234 SNASNLELLELA  245 (472)
Q Consensus       234 ~~~~~L~~L~l~  245 (472)
                      ..+|+|+.|+.+
T Consensus       137 ~klp~l~~LDF~  148 (233)
T KOG1644|consen  137 YKLPSLRTLDFQ  148 (233)
T ss_pred             EecCcceEeehh
Confidence            344445554444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.70  E-value=0.00017  Score=67.79  Aligned_cols=72  Identities=17%  Similarity=0.264  Sum_probs=48.2

Q ss_pred             ccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCC-cCccccccchhcccccCeee
Q 040195          304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN-FLHGSIPSSLGNLTKLANLE  382 (472)
Q Consensus       304 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~L~~L~  382 (472)
                      .+++.|++++|.++.+.  .+  -++|++|+++++.-....|..+  .++|+.|++++| .+. .+|      +.|+.|+
T Consensus        52 ~~l~~L~Is~c~L~sLP--~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIESLP--VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCcccC--CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceEE
Confidence            47889999999777653  22  2469999998864444556544  368999999988 443 344      3466666


Q ss_pred             ccCCcc
Q 040195          383 LSSNSL  388 (472)
Q Consensus       383 l~~~~~  388 (472)
                      +.++..
T Consensus       119 L~~n~~  124 (426)
T PRK15386        119 IKGSAT  124 (426)
T ss_pred             eCCCCC
Confidence            665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.70  E-value=1.8e-05  Score=80.53  Aligned_cols=150  Identities=19%  Similarity=0.216  Sum_probs=97.0

Q ss_pred             cccEEEeeccccc-Ccccccc-cCccCcceEeccccccccC-cchhhcCCCCCcEEEccCCcCccccccchhcccccCee
Q 040195          305 TMTHFYIGGNQIL-GIIHFGI-RNLVNLIALGMQSNQLHGT-IPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANL  381 (472)
Q Consensus       305 ~l~~l~l~~~~~~-~~~~~~l-~~~~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L  381 (472)
                      +|+.|+++|...- .-.+..+ .-+|+|+.|.+++-.+... ......++++|..||+++++++..  .+++.+++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            7888888774332 1122222 2468889998888766432 233456788999999999988744  677888888888


Q ss_pred             eccCCcccc-cCCcCccCCCCCceEeecCCcccccC------ChhhhhhcccceEEEcCCCccccccccccc-CCCCCce
Q 040195          382 ELSSNSLQG-NIPLSVGNCQNLIGFDASHITLTGAL------PQQLLSITTLSLYLDLSHNLLNGSLLLQVG-NLKNLIL  453 (472)
Q Consensus       382 ~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~------~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~-~~~~L~~  453 (472)
                      .+.+-.+.. .....+..+++|+.||+|.....+..      .+.-..+|.|+ .||.|++.+.+...+.+. .-++|+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLr-fLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELR-FLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcccc-EEecCCcchhHHHHHHHHHhCccHhh
Confidence            888877763 22234667888999999887654211      12233367788 888888888765444433 3355555


Q ss_pred             Eecc
Q 040195          454 LDIS  457 (472)
Q Consensus       454 L~L~  457 (472)
                      +..-
T Consensus       280 i~~~  283 (699)
T KOG3665|consen  280 IAAL  283 (699)
T ss_pred             hhhh
Confidence            5433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.66  E-value=5e-05  Score=47.10  Aligned_cols=36  Identities=28%  Similarity=0.492  Sum_probs=16.1

Q ss_pred             ccCeeeccCCcccccCCcCccCCCCCceEeecCCccc
Q 040195          377 KLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLT  413 (472)
Q Consensus       377 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~  413 (472)
                      +|++|++++|+++ .++..+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555554 33333444445555555544444

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.26  E-value=2.5e-05  Score=77.94  Aligned_cols=176  Identities=20%  Similarity=0.148  Sum_probs=98.5

Q ss_pred             hcCCCCCEEEccCcccCCC--CCcccCCCCCCcEEEcccC-cCcccCC----ccccCCCCCcEEEccccC-CCCCCCccc
Q 040195           83 GNLYRLEKLELSNNSFSGT--IPTNLSRCSELTHLRVANN-KLEGQIP----KEIGSLLKLQTLALYYNN-LTGQLPDFV  154 (472)
Q Consensus        83 ~~l~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~~~----~~l~~l~~L~~L~l~~~~-i~~~~~~~l  154 (472)
                      ..++.|+.+.+.++.....  .......++.|+.|+++++ ......+    .....+++|+.++++.+. +++.....+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            3468888888877743322  2234567788888888763 2211111    223456788888888877 665555555


Q ss_pred             cC-CCCccEEEecCCc-ccccccccc-ccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCc
Q 040195          155 GN-LSALQVIYIRGNS-LGGKIPTTL-GLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPD  231 (472)
Q Consensus       155 ~~-~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  231 (472)
                      .. +++|++|.+.+|. +++.....+ ..++.|++|+++++....     ..........+++++.|.+....-      
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~-----d~~l~~~~~~c~~l~~l~~~~~~~------  333 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT-----DSGLEALLKNCPNLRELKLLSLNG------  333 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch-----HHHHHHHHHhCcchhhhhhhhcCC------
Confidence            53 7888888877776 554444333 457789999988776421     111112234466666655443321      


Q ss_pred             cCcCCCCCCEEecCCCcc---cccccccccccCCCCeEEcCCCcC
Q 040195          232 SLSNASNLELLELAGNQF---EGKVSIDFSSLKNLAVLNLERNNL  273 (472)
Q Consensus       232 ~l~~~~~L~~L~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~  273 (472)
                          ++.++.+.+.+..-   ..........++.++.+.+..+..
T Consensus       334 ----c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~  374 (482)
T KOG1947|consen  334 ----CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI  374 (482)
T ss_pred             ----CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence                34444444433221   111222345667777777766653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.18  E-value=0.00021  Score=36.81  Aligned_cols=22  Identities=45%  Similarity=0.673  Sum_probs=18.1

Q ss_pred             CCceEeccCCeeccccCCccccC
Q 040195          450 NLILLDISGNQFSGVIPVTLSIC  472 (472)
Q Consensus       450 ~L~~L~L~~n~~~~~~p~~~~~~  472 (472)
                      +|+.|+|++|+++ .+|..|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            5889999999998 788888876

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.04  E-value=5.2e-05  Score=75.60  Aligned_cols=241  Identities=18%  Similarity=0.125  Sum_probs=135.2

Q ss_pred             CCCCCCcEEEcccCcCccc--CCccccCCCCCcEEEcccc-CCCCCCC----ccccCCCCccEEEecCCc-ccccccccc
Q 040195          107 SRCSELTHLRVANNKLEGQ--IPKEIGSLLKLQTLALYYN-NLTGQLP----DFVGNLSALQVIYIRGNS-LGGKIPTTL  178 (472)
Q Consensus       107 ~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~i~~~~~----~~l~~~~~L~~L~l~~~~-~~~~~~~~l  178 (472)
                      ..++.|+.+.+.++.....  .......+++|+.|+++++ ......+    .....+++|+.++++.+. +++.....+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            4578999999988854322  2345667899999999873 2111111    223456899999999987 666555555


Q ss_pred             cc-CCCccEEEccCCc-cccccccccccChhhhcCCCCccEEEcccccccc--cCCccCcCCCCCCEEecCCCccccccc
Q 040195          179 GL-LRNLVYLNVNENQ-FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVG--SIPDSLSNASNLELLELAGNQFEGKVS  254 (472)
Q Consensus       179 ~~-~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~  254 (472)
                      .. +++|++|.+.++. +.+.      -.......+++|++|++++|....  .......++++++.+.+....-     
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~------gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-----  333 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDE------GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-----  333 (482)
T ss_pred             HhhCCCcceEccCCCCccchh------HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-----
Confidence            44 8899999987776 3222      123445678999999999887642  1222345577777765443221     


Q ss_pred             ccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcc-cccccCccCcceE
Q 040195          255 IDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGII-HFGIRNLVNLIAL  333 (472)
Q Consensus       255 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~l~~~~~L~~L  333 (472)
                           ++.++.+.+..+.....                ...........+.++.+.+..+...... ...+..++.|+ .
T Consensus       334 -----c~~l~~~~l~~~~~~~~----------------d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~  391 (482)
T KOG1947|consen  334 -----CPSLTDLSLSGLLTLTS----------------DDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-E  391 (482)
T ss_pred             -----CccHHHHHHHHhhccCc----------------hhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-h
Confidence                 33344443333221100                0011112222335666666666544333 23445555552 2


Q ss_pred             eccccccccCcchhhcCCCCCcEEEccCCcCc-cccccchhc-ccccCeeeccCCccc
Q 040195          334 GMQSNQLHGTIPDVIGELKNLQILSLFGNFLH-GSIPSSLGN-LTKLANLELSSNSLQ  389 (472)
Q Consensus       334 ~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~-~~~L~~L~l~~~~~~  389 (472)
                      .+..         .......++.|+++.+... ......... +..++.+++.++...
T Consensus       392 ~l~~---------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  392 SLEL---------RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             HHHH---------HhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence            1111         1122233788888888643 222222222 677888888888654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=1.5e-05  Score=69.18  Aligned_cols=100  Identities=19%  Similarity=0.221  Sum_probs=72.0

Q ss_pred             CCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCC-CcccCCCCCCcEE
Q 040195           37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTI-PTNLSRCSELTHL  115 (472)
Q Consensus        37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L  115 (472)
                      ...++.|++.||.++++  ....+|+.|++|.|+-|.+++.  ..+..|.+|++|+|..|.|.+.. ..++.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45677888888888766  3456888899999988888754  34788888888888888776431 2456788888888


Q ss_pred             EcccCcCcccCCc-----cccCCCCCcEEE
Q 040195          116 RVANNKLEGQIPK-----EIGSLLKLQTLA  140 (472)
Q Consensus       116 ~l~~~~~~~~~~~-----~l~~l~~L~~L~  140 (472)
                      .+..|+..+..+.     .+.-+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888877644332     234467777665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.92  E-value=0.00041  Score=60.11  Aligned_cols=88  Identities=22%  Similarity=0.236  Sum_probs=54.6

Q ss_pred             ccCccCcceEeccccccccCcchhhcCCCCCcEEEccCC--cCccccccchhcccccCeeeccCCcccc-cCCcCccCCC
Q 040195          324 IRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN--FLHGSIPSSLGNLTKLANLELSSNSLQG-NIPLSVGNCQ  400 (472)
Q Consensus       324 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~  400 (472)
                      ...+..|+.+++.+..++..  ..|..+++|+.|.++.|  .+...+......+|+|+++++++|++.. .-...+..+.
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            33455666666666665522  23456778888888888  4544444444556888888888887762 1122344556


Q ss_pred             CCceEeecCCccc
Q 040195          401 NLIGFDASHITLT  413 (472)
Q Consensus       401 ~L~~L~ls~~~~~  413 (472)
                      +|..|++.+|..+
T Consensus       117 nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  117 NLKSLDLFNCSVT  129 (260)
T ss_pred             chhhhhcccCCcc
Confidence            6777777777665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=6.1e-05  Score=65.50  Aligned_cols=99  Identities=20%  Similarity=0.263  Sum_probs=47.9

Q ss_pred             CCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCC-CccccCCCCccEEE
Q 040195           86 YRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQL-PDFVGNLSALQVIY  164 (472)
Q Consensus        86 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~-~~~l~~~~~L~~L~  164 (472)
                      .+.+.|++.+|.+.++  ....+|+.|++|.++-|+++.  ...+..|.+|++|.|+.|.|.+.. ...+.++++|+.|-
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3445555555555432  223455566666666665542  233555566666666665554211 12233555666665


Q ss_pred             ecCCccccccc-----cccccCCCccEEE
Q 040195          165 IRGNSLGGKIP-----TTLGLLRNLVYLN  188 (472)
Q Consensus       165 l~~~~~~~~~~-----~~l~~~~~L~~L~  188 (472)
                      |..|.-.+...     ..+..+|+|++||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            55554332211     2344556666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.53  E-value=0.0015  Score=56.71  Aligned_cols=13  Identities=31%  Similarity=0.675  Sum_probs=5.8

Q ss_pred             CCccEEEecCCcc
Q 040195          158 SALQVIYIRGNSL  170 (472)
Q Consensus       158 ~~L~~L~l~~~~~  170 (472)
                      ++|+++++++|++
T Consensus        91 P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   91 PNLKVLNLSGNKI  103 (260)
T ss_pred             CceeEEeecCCcc
Confidence            4444444444443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.60  E-value=0.002  Score=53.73  Aligned_cols=84  Identities=18%  Similarity=0.131  Sum_probs=48.4

Q ss_pred             cccEEEeecccccCcccccccCccCcceEeccccc-cccCcchhhc-CCCCCcEEEccCCc-CccccccchhcccccCee
Q 040195          305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQ-LHGTIPDVIG-ELKNLQILSLFGNF-LHGSIPSSLGNLTKLANL  381 (472)
Q Consensus       305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~-~~~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L  381 (472)
                      .++.++-+++.|.......+..+++++.|.+.+|. +.+...+.++ -.++|+.|+|++|+ |++....++..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            46666666666666655666666666666666663 2222222222 23666677776663 555555566666666666


Q ss_pred             eccCCcc
Q 040195          382 ELSSNSL  388 (472)
Q Consensus       382 ~l~~~~~  388 (472)
                      .+++-+.
T Consensus       182 ~l~~l~~  188 (221)
T KOG3864|consen  182 HLYDLPY  188 (221)
T ss_pred             HhcCchh
Confidence            6665543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.48  E-value=0.00017  Score=70.34  Aligned_cols=133  Identities=22%  Similarity=0.212  Sum_probs=64.6

Q ss_pred             ccEEEeecccccCc----ccccccCccCcceEeccccccccC----cchhhc----CCCCCcEEEccCCcCcccc----c
Q 040195          306 MTHFYIGGNQILGI----IHFGIRNLVNLIALGMQSNQLHGT----IPDVIG----ELKNLQILSLFGNFLHGSI----P  369 (472)
Q Consensus       306 l~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~i~~~----~~~~~~----~~~~L~~L~L~~n~l~~~~----~  369 (472)
                      ++.|++..|.++..    ....+.....++.++++.|.+...    .+.++.    ...++++|.+..|.++...    .
T Consensus       146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~  225 (478)
T KOG4308|consen  146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD  225 (478)
T ss_pred             HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence            34444444544433    122344456666666666655321    122222    3456667777776665321    1


Q ss_pred             cchhcccc-cCeeeccCCccccc----CCcCccCC-CCCceEeecCCccccc----CChhhhhhcccceEEEcCCCcccc
Q 040195          370 SSLGNLTK-LANLELSSNSLQGN----IPLSVGNC-QNLIGFDASHITLTGA----LPQQLLSITTLSLYLDLSHNLLNG  439 (472)
Q Consensus       370 ~~l~~~~~-L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~ls~~~~~~~----~~~~l~~~~~l~~~L~ls~n~l~~  439 (472)
                      ..+...+. +.++++..|.+.+.    ....+..+ ..++.++++.|.+.+.    +...+..++.++ .+.+++|.+.+
T Consensus       226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~-~l~l~~n~l~~  304 (478)
T KOG4308|consen  226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLE-ELSLSNNPLTD  304 (478)
T ss_pred             HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHH-HhhcccCcccc
Confidence            22333344 55566666665532    12223333 4556666666666522    223344445455 56666666553

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.36  E-value=0.034  Score=34.22  Aligned_cols=24  Identities=63%  Similarity=1.289  Sum_probs=17.1

Q ss_pred             CCCCCCCCCCCC--CCcccccceeeC
Q 040195           11 DPSGVTSSWNNT--INLCQWMGVTCG   34 (472)
Q Consensus        11 ~~~~~~~~~~~~--~~~~~~~~~~~~   34 (472)
                      ++.+.+.+|+..  .++|.|.||.|.
T Consensus        18 ~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   18 DPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             ccCcccccCCCcCCCCCeeeccEEeC
Confidence            567899999987  799999999993

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.26  E-value=0.006  Score=50.93  Aligned_cols=83  Identities=16%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCcc-Ccchhhh-cCCCCCEEEccCc-ccCCCCCcccCCCCCCcE
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHG-EIPQEIG-NLYRLEKLELSNN-SFSGTIPTNLSRCSELTH  114 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~~~~~~-~l~~L~~L~L~~~-~~~~~~~~~l~~l~~L~~  114 (472)
                      ..++.+|.+++.|.......+..++.++.|.+.+|.--+ ...+.+. -.++|+.|++++| .|++.....+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            557788888888877776777777777878777775322 1111222 2466777777766 344333444555566666


Q ss_pred             EEcccC
Q 040195          115 LRVANN  120 (472)
Q Consensus       115 L~l~~~  120 (472)
                      |.+.+-
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            655443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.21  E-value=0.028  Score=26.69  Aligned_cols=14  Identities=43%  Similarity=0.629  Sum_probs=7.7

Q ss_pred             CCCceEeccCCeec
Q 040195          449 KNLILLDISGNQFS  462 (472)
Q Consensus       449 ~~L~~L~L~~n~~~  462 (472)
                      ++|+.|+|++|+++
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            36777777777764

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.96  E-value=0.028  Score=28.76  Aligned_cols=8  Identities=25%  Similarity=0.002  Sum_probs=2.9

Q ss_pred             eEeecCCc
Q 040195          404 GFDASHIT  411 (472)
Q Consensus       404 ~L~ls~~~  411 (472)
                      +|++++|.
T Consensus         4 ~Ldls~n~   11 (22)
T PF00560_consen    4 YLDLSGNN   11 (22)
T ss_dssp             EEEETSSE
T ss_pred             EEECCCCc
Confidence            33333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.81  E-value=0.0097  Score=31.27  Aligned_cols=22  Identities=36%  Similarity=0.380  Sum_probs=12.9

Q ss_pred             CCCceEeccCCeeccccCCccc
Q 040195          449 KNLILLDISGNQFSGVIPVTLS  470 (472)
Q Consensus       449 ~~L~~L~L~~n~~~~~~p~~~~  470 (472)
                      ++|+.|+|++|++++..+..++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHhC
Confidence            5677777777777766555443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.03  E-value=0.00076  Score=65.86  Aligned_cols=158  Identities=23%  Similarity=0.212  Sum_probs=79.2

Q ss_pred             cccEEEeecccccCcccc----cccCc-cCcceEeccccccccCc----chhhcCCCCCcEEEccCCcCccc----cccc
Q 040195          305 TMTHFYIGGNQILGIIHF----GIRNL-VNLIALGMQSNQLHGTI----PDVIGELKNLQILSLFGNFLHGS----IPSS  371 (472)
Q Consensus       305 ~l~~l~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~i~~~~----~~~~~~~~~L~~L~L~~n~l~~~----~~~~  371 (472)
                      .++.++++++.+......    .+... ..++.|.+..|.++...    .+.+.....++.++++.|.+...    .+..
T Consensus       116 ~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~  195 (478)
T KOG4308|consen  116 TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQA  195 (478)
T ss_pred             cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhh
Confidence            555666666655532111    11221 34455555555555432    23444556666666666665311    1222


Q ss_pred             hh----cccccCeeeccCCccccc----CCcCccCCCC-CceEeecCCcccccC----Chhhhhh-cccceEEEcCCCcc
Q 040195          372 LG----NLTKLANLELSSNSLQGN----IPLSVGNCQN-LIGFDASHITLTGAL----PQQLLSI-TTLSLYLDLSHNLL  437 (472)
Q Consensus       372 l~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~ls~~~~~~~~----~~~l~~~-~~l~~~L~ls~n~l  437 (472)
                      +.    ...++++|.+++|.++..    +...+...++ ++.+++..|.+.+..    ...+..+ ..++ .++++.|.+
T Consensus       196 l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~-~l~l~~nsi  274 (478)
T KOG4308|consen  196 LESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLR-VLDLSRNSI  274 (478)
T ss_pred             hhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhh-hhhhhcCCc
Confidence            22    345666666666665521    2233344444 556666666665321    1223333 2334 667777766


Q ss_pred             ccc----ccccccCCCCCceEeccCCeecc
Q 040195          438 NGS----LLLQVGNLKNLILLDISGNQFSG  463 (472)
Q Consensus       438 ~~~----~~~~l~~~~~L~~L~L~~n~~~~  463 (472)
                      ++.    +.+.+..++.++.+.+++|++.+
T Consensus       275 ~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  275 TEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             cccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            643    33455555667777777776653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.43  E-value=0.0084  Score=51.19  Aligned_cols=96  Identities=17%  Similarity=0.088  Sum_probs=70.3

Q ss_pred             ccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCC
Q 040195          320 IHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC  399 (472)
Q Consensus       320 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  399 (472)
                      ....+..+...+.||++.|++-.. ..-|..++.+..|+++.|.+. ..|+.+.....+..+.+..|... ..|.++...
T Consensus        34 ~v~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~  110 (326)
T KOG0473|consen   34 PVREIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKE  110 (326)
T ss_pred             chhhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccccc
Confidence            334556677788888888876633 234566778888888888877 67777777788888888888777 677788888


Q ss_pred             CCCceEeecCCcccccCCh
Q 040195          400 QNLIGFDASHITLTGALPQ  418 (472)
Q Consensus       400 ~~L~~L~ls~~~~~~~~~~  418 (472)
                      +.+++++..++.++..+..
T Consensus       111 ~~~k~~e~k~~~~~~~~~~  129 (326)
T KOG0473|consen  111 PHPKKNEQKKTEFFRKLFG  129 (326)
T ss_pred             CCcchhhhccCcchHHHHh
Confidence            8888888888887633333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.46  E-value=0.3  Score=26.04  Aligned_cols=22  Identities=45%  Similarity=0.566  Sum_probs=13.5

Q ss_pred             CCCCceEeccCCeeccccCCcc
Q 040195          448 LKNLILLDISGNQFSGVIPVTL  469 (472)
Q Consensus       448 ~~~L~~L~L~~n~~~~~~p~~~  469 (472)
                      +++|+.|+|++|.++...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3567777888887764433333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.46  E-value=0.3  Score=26.04  Aligned_cols=22  Identities=45%  Similarity=0.566  Sum_probs=13.5

Q ss_pred             CCCCceEeccCCeeccccCCcc
Q 040195          448 LKNLILLDISGNQFSGVIPVTL  469 (472)
Q Consensus       448 ~~~L~~L~L~~n~~~~~~p~~~  469 (472)
                      +++|+.|+|++|.++...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3567777888887764433333

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.62  E-value=0.024  Score=48.49  Aligned_cols=86  Identities=17%  Similarity=0.236  Sum_probs=40.6

Q ss_pred             hcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccc
Q 040195          348 IGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLS  427 (472)
Q Consensus       348 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~  427 (472)
                      +......+.|+++.|++. -+-.-|..++.++.|+++.|++. -.|..+.+...++.++.-+|... ..|.++...+.++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            344455566666666554 22233444555555555555554 33444444444444444444443 3444444444444


Q ss_pred             eEEEcCCCcc
Q 040195          428 LYLDLSHNLL  437 (472)
Q Consensus       428 ~~L~ls~n~l  437 (472)
                       ++++.+|.+
T Consensus       115 -~~e~k~~~~  123 (326)
T KOG0473|consen  115 -KNEQKKTEF  123 (326)
T ss_pred             -hhhhccCcc
Confidence             444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	472
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-32
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-32
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-08
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		3e-04
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		3e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		3e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		6e-04
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		8e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 138/465 (29%), Positives = 207/465 (44%), Gaps = 61/465 (13%)
Query: 40  VTELDLSNQRIGGVLSPY--VGNLSFLRYINLSDN--GFHGEIPQEIGNLYRLEKLELSN 95
           +T LDLS   + G ++    +G+ S L+++N+S N   F G++   +  L  LE L+LS 
Sbjct: 99  LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 157
Query: 96  NSFSGT--IPTNLSR-CSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD 152
           NS SG   +   LS  C EL HL ++ NK+ G +  ++   + L+ L +  NN +  +P 
Sbjct: 158 NSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP- 214
Query: 153 FVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF------------WYVS-- 198
           F+G+ SALQ + I GN L G     +     L  LN++ NQF             Y+S  
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 274
Query: 199 --SFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKVSID 256
              F+G +P  +      L  L ++ N+F G++P                N F G++ +D
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 257 -FSSLKNLAVLNLERNNLGIGTANDLG--FVTFLT------NCSSLKLPHSIANLSSTMT 307
               ++ L VL+L  N         L     + LT      N S   LP+   N  +T+ 
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 308 HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS 367
             Y+  N   G I   + N   L++L +  N L GTIP  +G L  L+ L L+ N L G 
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 368 IPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTXX 427
           IP  L  +  L  L L  N L G IP  + NC NL     S+  LTG +P+ +  +    
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL---- 510
Query: 428 XXXXXXXXXXXXXXXXXXXXXKNLILLDISGNQFSGVIPVTLSIC 472
                                +NL +L +S N FSG IP  L  C
Sbjct: 511 ---------------------ENLAILKLSNNSFSGNIPAELGDC 534

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 138/465 (29%), Positives = 207/465 (44%), Gaps = 61/465 (13%)
Query: 40  VTELDLSNQRIGGVLSPY--VGNLSFLRYINLSDN--GFHGEIPQEIGNLYRLEKLELSN 95
           +T LDLS   + G ++    +G+ S L+++N+S N   F G++   +  L  LE L+LS 
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 160
Query: 96  NSFSGT--IPTNLSR-CSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD 152
           NS SG   +   LS  C EL HL ++ NK+ G +  ++   + L+ L +  NN +  +P 
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP- 217
Query: 153 FVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF------------WYVS-- 198
           F+G+ SALQ + I GN L G     +     L  LN++ NQF             Y+S  
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277
Query: 199 --SFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKVSID 256
              F+G +P  +      L  L ++ N+F G++P                N F G++ +D
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 257 -FSSLKNLAVLNLERNNLGIGTANDLG--FVTFLT------NCSSLKLPHSIANLSSTMT 307
               ++ L VL+L  N         L     + LT      N S   LP+   N  +T+ 
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 308 HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS 367
             Y+  N   G I   + N   L++L +  N L GTIP  +G L  L+ L L+ N L G 
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 368 IPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTXX 427
           IP  L  +  L  L L  N L G IP  + NC NL     S+  LTG +P+ +  +    
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL---- 513
Query: 428 XXXXXXXXXXXXXXXXXXXXXKNLILLDISGNQFSGVIPVTLSIC 472
                                +NL +L +S N FSG IP  L  C
Sbjct: 514 ---------------------ENLAILKLSNNSFSGNIPAELGDC 537

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 112/272 (41%), Gaps = 69/272 (25%)
Query: 17  SSWNNTINLCQ--WMGVTCGHRHQ--RVTELDLSNQR---------------------IG 51
           SSW  T + C   W+GV C    Q  RV  LDLS                        IG
Sbjct: 25  SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84
Query: 52  GV------LSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTN 105
           G+      + P +  L+ L Y+ ++     G IP  +  +  L  L+ S N+ SGT+P +
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 106 LSRCSELTHLRVANNKLEGQIPKEIGSLLKLQT-LALYYNNLTGQLPDFVGNLSAL---- 160
           +S    L  +    N++ G IP   GS  KL T + +  N LTG++P    NL+      
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204
Query: 161 -------------------QVIYIRGNSLG---GKIPTTLGLLRNLVYLNVNENQFWYVS 198
                              Q I++  NSL    GK+    GL +NL  L++  N+ +   
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV----GLSKNLNGLDLRNNRIY--- 257
Query: 199 SFSGSLPFDILVNLPNLKKLCIAENNFVGSIP 230
              G+LP   L  L  L  L ++ NN  G IP
Sbjct: 258 ---GTLP-QGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 17/158 (10%)
Query: 258 SSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQIL 317
           SSL NL  LN     L IG  N+L             +P +IA L+  + + YI    + 
Sbjct: 70  SSLANLPYLNF----LYIGGINNL----------VGPIPPAIAKLTQ-LHYLYITHTNVS 114
Query: 318 GIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTK 377
           G I   +  +  L+ L    N L GT+P  I  L NL  ++  GN + G+IP S G+ +K
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 378 L-ANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTG 414
           L  ++ +S N L G IP +  N  NL   D S   L G
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 114/276 (41%), Gaps = 45/276 (16%)
Query: 142 YYNNLT------GQLPDF--VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
           Y NNLT       QL D   + NL+ L  I +  N +    P  L  L NL  L +  NQ
Sbjct: 66  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 123
Query: 194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXX-XXXXXXXXXGNQFEGK 252
              +         D L NL NL +L ++ N    +I D               GNQ    
Sbjct: 124 ITDI---------DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLSFGNQVT-- 168
Query: 253 VSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL-KLPHSIANLS-----STM 306
              D   L NL  L  ER ++     +D+  +  LTN  SL    + I++++     + +
Sbjct: 169 ---DLKPLANLTTL--ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 223
Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366
               + GNQ+  I      +L NL  L + +NQ+    P  +  L  L  L L  N +  
Sbjct: 224 DELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279
Query: 367 SIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
             P  L  LT L NLEL+ N L+   P+S  N +NL
Sbjct: 280 ISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 311

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 112/275 (40%), Gaps = 42/275 (15%)
Query: 142 YYNNLT------GQLPDF--VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
           Y NNLT       QL D   + NL+ L  I +  N +    P  L  L NL  L +  NQ
Sbjct: 61  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKV 253
              +         D L NL NL +L ++ N    +I D                 F    
Sbjct: 119 ITDI---------DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQL---SFSSNQ 162
Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL-KLPHSIANLS-----STMT 307
             D   L NL  L  ER ++     +D+  +  LTN  SL    + I++++     + + 
Sbjct: 163 VTDLKPLANLTTL--ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD 220
Query: 308 HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS 367
              + GNQ+  I      +L NL  L + +NQ+    P  +  L  L  L L  N +   
Sbjct: 221 ELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 276
Query: 368 IPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
            P  L  LT L NLEL+ N L+   P+S  N +NL
Sbjct: 277 SP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 114/276 (41%), Gaps = 45/276 (16%)
Query: 142 YYNNLT------GQLPDF--VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
           Y NNLT       QL D   + NL+ L  I +  N +    P  L  L NL  L +  NQ
Sbjct: 65  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 122
Query: 194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXX-XXXXXXXXXGNQFEGK 252
              +         D L NL NL +L ++ N    +I D               GNQ    
Sbjct: 123 ITDI---------DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLSFGNQVT-- 167
Query: 253 VSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL-KLPHSIANLS-----STM 306
              D   L NL  L  ER ++     +D+  +  LTN  SL    + I++++     + +
Sbjct: 168 ---DLKPLANLTTL--ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 222
Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366
               + GNQ+  I      +L NL  L + +NQ+    P  +  L  L  L L  N +  
Sbjct: 223 DELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 278
Query: 367 SIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
             P  L  LT L NLEL+ N L+   P+S  N +NL
Sbjct: 279 ISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 310

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 20/205 (9%)
Query: 40  VTELDLS-NQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF 98
           + +LDLS N ++  V       L  L  ++L   G     P     L  L+ L L +N+ 
Sbjct: 81  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 99  SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS 158
                        LTHL +  N++     +    L  L  L L+ N +    P    +L 
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF---------W-YVSSFSGSLPFDI 208
            L  +Y+  N+L       L  LR L YL +N+N +         W ++  F GS   ++
Sbjct: 201 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGS-SSEV 259
Query: 209 LVNLP------NLKKLCIAENNFVG 227
             +LP      +LK+L  A N+  G
Sbjct: 260 PCSLPQRLAGRDLKRL--AANDLQG 282

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 20/205 (9%)
Query: 40  VTELDLS-NQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF 98
           + +LDLS N ++  V       L  L  ++L   G     P     L  L+ L L +N+ 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 99  SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS 158
                        LTHL +  N++     +    L  L  L L+ N +    P    +L 
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF---------W-YVSSFSGSLPFDI 208
            L  +Y+  N+L       L  LR L YL +N+N +         W ++  F GS   ++
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGS-SSEV 260
Query: 209 LVNLP------NLKKLCIAENNFVG 227
             +LP      +LK+L  A N+  G
Sbjct: 261 PCSLPQRLAGRDLKRL--AANDLQG 283

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 112/275 (40%), Gaps = 42/275 (15%)
Query: 142 YYNNLT------GQLPDF--VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
           Y NNLT       QL D   + NL+ L  I +  N +    P  L  L NL  L +  NQ
Sbjct: 61  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKV 253
              +         D L NL NL +L ++ N    +I D                 F    
Sbjct: 119 ITDI---------DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQL---SFSSNQ 162
Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL-KLPHSIANLS-----STMT 307
             D   L NL  L  ER ++     +D+  +  LTN  SL    + I++++     + + 
Sbjct: 163 VTDLKPLANLTTL--ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD 220
Query: 308 HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS 367
              + GNQ+  I      +L NL  L + +NQ+    P  +  L  L  L L  N +   
Sbjct: 221 ELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 276
Query: 368 IPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
            P  L  LT L NLEL+ N L+   P+S  N +NL
Sbjct: 277 SP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 114/276 (41%), Gaps = 45/276 (16%)
Query: 142 YYNNLT------GQLPDF--VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
           Y NNLT       QL D   + NL+ L  I +  N +    P  L  L NL  L +  NQ
Sbjct: 61  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXX-XXXXXXXXXGNQFEGK 252
              +         D L NL NL +L ++ N    +I D               GNQ    
Sbjct: 119 ITDI---------DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLNFGNQV--- 162
Query: 253 VSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL-KLPHSIANLS-----STM 306
              D   L NL  L  ER ++     +D+  +  LTN  SL    + I++++     + +
Sbjct: 163 --TDLKPLANLTTL--ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 218
Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366
               + GNQ+  I      +L NL  L + +NQ+    P  +  L  L  L L  N +  
Sbjct: 219 DELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 274
Query: 367 SIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
             P  L  LT L NLEL+ N L+   P+S  N +NL
Sbjct: 275 ISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 306

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 112/275 (40%), Gaps = 42/275 (15%)
Query: 142 YYNNLT------GQLPDF--VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
           Y NNLT       QL D   + NL+ L  I +  N +    P  L  L NL  L +  NQ
Sbjct: 61  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKV 253
              +         D L NL NL +L ++ N    +I D                 F    
Sbjct: 119 ITDI---------DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQL---NFSSNQ 162
Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL-KLPHSIANLS-----STMT 307
             D   L NL  L  ER ++     +D+  +  LTN  SL    + I++++     + + 
Sbjct: 163 VTDLKPLANLTTL--ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD 220
Query: 308 HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS 367
              + GNQ+  I      +L NL  L + +NQ+    P  +  L  L  L L  N +   
Sbjct: 221 ELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 276
Query: 368 IPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
            P  L  LT L NLEL+ N L+   P+S  N +NL
Sbjct: 277 SP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 114/276 (41%), Gaps = 45/276 (16%)
Query: 142 YYNNLT------GQLPDF--VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
           Y NNLT       QL D   + NL+ L  I +  N +    P  L  L NL  L +  NQ
Sbjct: 61  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXX-XXXXXXXXXGNQFEGK 252
              +         D L NL NL +L ++ N    +I D               GNQ    
Sbjct: 119 ITDI---------DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLNFGNQVT-- 163
Query: 253 VSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL-KLPHSIANLS-----STM 306
              D   L NL  L  ER ++     +D+  +  LTN  SL    + I++++     + +
Sbjct: 164 ---DLKPLANLTTL--ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 218
Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366
               + GNQ+  I      +L NL  L + +NQ+    P  +  L  L  L L  N +  
Sbjct: 219 DELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 274
Query: 367 SIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
             P  L  LT L NLEL+ N L+   P+S  N +NL
Sbjct: 275 ISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 306

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 9/187 (4%)
Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNNSF 98
             +LDL + ++  + S     L+ LR + L+DN     +P  I   L  LE L +++N  
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL 97
Query: 99  SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS 158
                    +   L  LR+  N+L+   P+   SL KL  L+L YN L          L+
Sbjct: 98  QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL 218
           +L+ + +  N L          L  L  L ++ NQ   V       P     +L  LK L
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-------PEGAFDSLEKLKML 210
Query: 219 CIAENNF 225
            + EN +
Sbjct: 211 QLQENPW 217

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 270 RNNLGIGTANDLGFVTFLTNCSSLK-LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLV 328
           R ++  G      ++   TN  SLK LP+ + +  +++T  Y+GGN++  + +     L 
Sbjct: 19  RTSVPTGIPAQTTYLDLETN--SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 329 NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSL 388
           +L  L + +NQL      V  +L  L+ L+L  N L          LT+L +L L  N L
Sbjct: 77  SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 389 Q 389
           +
Sbjct: 137 K 137

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 18/200 (9%)
Query: 40  VTELDLSNQRIGGVLSPYV-GNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF 98
           + +LDLS+     V+ P     L  L  ++L   G     P     L  L+ L L +N+ 
Sbjct: 81  LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL 140
Query: 99  SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS 158
                        LTHL +  N++          L  L  L L+ N++    P    +L 
Sbjct: 141 QALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLG 200
Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF---------W-YVSSFSGSLPFDI 208
            L  +Y+  N+L       L  LR+L YL +N+N +         W ++  F GS   ++
Sbjct: 201 RLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGS-SSEV 259
Query: 209 LVNLP------NLKKLCIAE 222
             NLP      +LK+L  ++
Sbjct: 260 PCNLPQRLAGRDLKRLAASD 279

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	472
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  304 bits (782), Expect = 7e-96
 Identities = 121/444 (27%), Positives = 207/444 (46%), Gaps = 26/444 (5%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
             LD+S  ++ G  S  +   + L+ +N+S N F G IP     L  L+ L L+ N F+G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283

Query: 101 TIPTNLS-RCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLP-DFVGNLS 158
            IP  LS  C  LT L ++ N   G +P   GS   L++LAL  NN +G+LP D +  + 
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 159 ALQVIYIRGNSLGGKIPTTLG-LLRNLVYLNVNENQFWYVSSFSGSLPFDILVN-LPNLK 216
            L+V+ +  N   G++P +L  L  +L+ L+++ N F      SG +  ++  N    L+
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF------SGPILPNLCQNPKNTLQ 397

Query: 217 KLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNL--- 273
           +L +  N F G IP +LSN S L  L L+ N   G +     SL  L  L L  N L   
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457

Query: 274 ---GIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNL 330
               +     L  +    N  + ++P  ++N ++ +    +  N++ G I   I  L NL
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEIPKWIGRLENL 516

Query: 331 IALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG 390
             L + +N   G IP  +G+ ++L  L L  N  +G+IP+++   +      +++N + G
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAG 572

Query: 391 NIPLSVGNCQNLIGFDAS--HITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNL 448
              + + N         +   +   G   +QL  ++T +   +++  +  G       N 
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN-PCNITSRVYGGHTSPTFDNN 631

Query: 449 KNLILLDISGNQFSGVIPVTLSIC 472
            +++ LD+S N  SG IP  +   
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSM 655

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  292 bits (750), Expect = 3e-91
 Identities = 123/457 (26%), Positives = 196/457 (42%), Gaps = 53/457 (11%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
             LD+S+      + P++G+ S L+++++S N   G+  + I     L+ L +S+N F G
Sbjct: 203 EFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQLPDFVGNLSA 159
            IP        L +L +A NK  G+IP  + G+   L  L L  N+  G +P F G+ S 
Sbjct: 262 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 160 LQVIYIRGNSLGGKIPT-TLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL 218
           L+ + +  N+  G++P  TL  +R L  L+++ N+F      SG LP  +     +L  L
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF------SGELPESLTNLSASLLTL 373

Query: 219 CIAENNFVGSIPDSLSN--ASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG 276
            ++ NNF G I  +L     + L+ L L  N F GK+    S+   L  L+L  N L   
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL--- 430

Query: 277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQ 336
                          S  +P S+ +LS  +    +  N + G I   +  +  L  L + 
Sbjct: 431 ---------------SGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 337 SNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSV 396
            N L G IP  +    NL  +SL  N L G IP  +G L  LA L+LS+NS  GNIP  +
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

Query: 397 GNCQNLIGFDASHITLTGALPQQLLSITTL---------------------SLYLDLSHN 435
           G+C++LI  D +     G +P  +   +                         +   +  
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594

Query: 436 LLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSIC 472
              G    Q+  L      +I+   + G    T    
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  278 bits (713), Expect = 7e-86
 Identities = 114/434 (26%), Positives = 193/434 (44%), Gaps = 37/434 (8%)

Query: 41  TELDLSNQRIGGVLSPYV-GNLSFLRYINLSDNGFHGEIPQEIGNL-YRLEKLELSNNSF 98
             L LS+    G L       +  L+ ++LS N F GE+P+ + NL   L  L+LS+N+F
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 99  SGTIPTNLSRC--SELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGN 156
           SG I  NL +   + L  L + NN   G+IP  + +  +L +L L +N L+G +P  +G+
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 157 LSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLK 216
           LS L+ + +  N L G+IP  L  ++ L  L ++ N        +G +P  +  N  NL 
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL------TGEIPSGL-SNCTNLN 493

Query: 217 KLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG 276
            + ++ N   G IP  +    NL +L+L+ N F G +  +    ++L  L+L  N     
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF--- 550

Query: 277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQ 336
                          +  +P ++   S  +       N I G  +  I+N          
Sbjct: 551 ---------------NGTIPAAMFKQSGKI-----AANFIAGKRYVYIKNDGMKKECHGA 590

Query: 337 SN--QLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPL 394
            N  +  G   + +  L      ++      G    +  N   +  L++S N L G IP 
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

Query: 395 SVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILL 454
            +G+   L   +  H  ++G++P ++  +  L+  LDLS N L+G +   +  L  L  +
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN-ILDLSSNKLDGRIPQAMSALTMLTEI 709

Query: 455 DISGNQFSGVIPVT 468
           D+S N  SG IP  
Sbjct: 710 DLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  278 bits (713), Expect = 7e-86
 Identities = 114/472 (24%), Positives = 189/472 (40%), Gaps = 65/472 (13%)

Query: 11  DPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLS 70
               +   W++  N C + GVTC  R  +VT +DLS++ +                    
Sbjct: 25  PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPL-------------------- 62

Query: 71  DNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIP--K 128
            N     +   + +L  LE L LSN+  +G++       + LT L ++ N L G +    
Sbjct: 63  -NVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLT 120

Query: 129 EIGSLLKLQTLALYYNNLTGQLPD-FVGNLSALQVIYIRGNSLGGKIPTTL---GLLRNL 184
            +GS   L+ L +  N L           L++L+V+ +  NS+ G              L
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180

Query: 185 VYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLEL 244
            +L ++ N+       SG +    +    NL+ L ++ NNF   IP  L + S L+ L++
Sbjct: 181 KHLAISGNK------ISGDVD---VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDI 230

Query: 245 AGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSS 304
           +GN+  G  S   S+   L +LN+  N                       +P     L S
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLNISSNQF------------------VGPIPPL--PLKS 270

Query: 305 TMTHFYIGGNQILGIIHFGIR-NLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNF 363
            + +  +  N+  G I   +      L  L +  N  +G +P   G    L+ L+L  N 
Sbjct: 271 -LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

Query: 364 LHGSIP-SSLGNLTKLANLELSSNSLQGNIPLSVGNC-QNLIGFDASHITLTGALPQQLL 421
             G +P  +L  +  L  L+LS N   G +P S+ N   +L+  D S    +G +   L 
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389

Query: 422 SITTLSL-YLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSIC 472
                +L  L L +N   G +   + N   L+ L +S N  SG IP +L   
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  253 bits (648), Expect = 2e-76
 Identities = 120/392 (30%), Positives = 182/392 (46%), Gaps = 32/392 (8%)

Query: 41  TELDLSNQRIGGVLSPYVGN--LSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF 98
             LDLS+    G + P +     + L+ + L +NGF G+IP  + N   L  L LS N  
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430

Query: 99  SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS 158
           SGTIP++L   S+L  L++  N LEG+IP+E+  +  L+TL L +N+LTG++P  + N +
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490

Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL 218
            L  I +  N L G+IP  +G L NL  L ++ N      SFSG++P ++  +  +L  L
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN------SFSGNIPAELG-DCRSLIWL 543

Query: 219 CIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTA 278
            +  N F G+IP ++   S      +A N   GK  +   +       +   N L     
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEF--- 596

Query: 279 NDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSN 338
                               +  LS+      I      G       N  +++ L M  N
Sbjct: 597 -------------QGIRSEQLNRLST-RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642

Query: 339 QLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGN 398
            L G IP  IG +  L IL+L  N + GSIP  +G+L  L  L+LSSN L G IP ++  
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702

Query: 399 CQNLIGFDASHITLTGALPQ--QLLSITTLSL 428
              L   D S+  L+G +P+  Q  +      
Sbjct: 703 LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  105 bits (264), Expect = 3e-24
 Identities = 37/113 (32%), Positives = 65/113 (57%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
               +++++  GG  SP   N   + ++++S N   G IP+EIG++  L  L L +N  S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD 152
           G+IP  +     L  L +++NKL+G+IP+ + +L  L  + L  NNL+G +P+
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.8 bits (208), Expect = 3e-17
 Identities = 32/90 (35%), Positives = 50/90 (55%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS 97
             +  LD+S   + G +   +G++ +L  +NL  N   G IP E+G+L  L  L+LS+N 
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691

Query: 98  FSGTIPTNLSRCSELTHLRVANNKLEGQIP 127
             G IP  +S  + LT + ++NN L G IP
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  212 bits (543), Expect = 1e-65
 Identities = 81/265 (30%), Positives = 123/265 (46%), Gaps = 17/265 (6%)

Query: 17  SSWNNTINLCQ--WMGVTCGHRHQ--RVTELDLSNQRIGGV--LSPYVGNLSFLRYINLS 70
           SSW  T + C   W+GV C    Q  RV  LDLS   +     +   + NL +L ++ + 
Sbjct: 25  SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84

Query: 71  D-NGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKE 129
             N   G IP  I  L +L  L +++ + SG IP  LS+   L  L  + N L G +P  
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 130 IGSLLKLQTLALYYNNLTGQLPDFVGNLSAL-QVIYIRGNSLGGKIPTTLGLLRNLVYLN 188
           I SL  L  +    N ++G +PD  G+ S L   + I  N L GKIP T   L NL +++
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203

Query: 189 VNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ 248
           ++ N         G        +  N +K+ +A+N+    +   +  + NL  L+L  N+
Sbjct: 204 LSRNM------LEGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNR 255

Query: 249 FEGKVSIDFSSLKNLAVLNLERNNL 273
             G +    + LK L  LN+  NNL
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  186 bits (475), Expect = 2e-55
 Identities = 81/334 (24%), Positives = 136/334 (40%), Gaps = 61/334 (18%)

Query: 77  EIPQEIGNLYRL----EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQ--IPKEI 130
           +I +++GN   L       +  N ++ G +    ++   + +L ++   L     IP  +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 131 GSLLKLQTLALY-YNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV 189
            +L  L  L +   NNL G +P  +  L+ L  +YI   ++ G IP  L  ++ LV L+ 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 190 NENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNL-ELLELAGNQ 248
           + N      + SG+LP  I  +LPNL  +    N   G+IPDS  + S L   + ++ N+
Sbjct: 133 SYN------ALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 249 FEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTH 308
             GK                                          +P + ANL+  +  
Sbjct: 186 LTGK------------------------------------------IPPTFANLN--LAF 201

Query: 309 FYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSI 368
             +  N + G       +  N   + +  N L   +   +G  KNL  L L  N ++G++
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260

Query: 369 PSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
           P  L  L  L +L +S N+L G IP   GN Q  
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRF 293

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  147 bits (374), Expect = 6e-41
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 5/181 (2%)

Query: 295 LPHSIANLSSTMTHFYIGGNQILGIIHF--GIRNLVNLIALGMQS-NQLHGTIPDVIGEL 351
           L  +       + +  + G  +         + NL  L  L +   N L G IP  I +L
Sbjct: 42  LCDTDTQTYR-VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 352 KNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHIT 411
             L  L +    + G+IP  L  +  L  L+ S N+L G +P S+ +  NL+G       
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 412 LTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSI 471
           ++GA+P    S + L   + +S N L G +     NL NL  +D+S N   G   V    
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGS 219

Query: 472 C 472
            
Sbjct: 220 D 220

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.2 bits (152), Expect = 7e-11
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS 97
           +   ++ L+   +   L   VG    L  ++L +N  +G +PQ +  L  L  L +S N+
Sbjct: 221 KNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 98  FSGTIPTNLSRCSELTHLRVANNK 121
             G IP              ANNK
Sbjct: 280 LCGEIPQ-GGNLQRFDVSAYANNK 302

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  208 bits (532), Expect = 9e-61
 Identities = 89/530 (16%), Positives = 163/530 (30%), Gaps = 98/530 (18%)

Query: 16  TSSWNNTINLCQWM---GVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINL--- 69
            ++WN    L  W    GV+    + RVT L L      G +   +G L+ L  + L   
Sbjct: 57  GANWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH 115

Query: 70  -------------------------SDNGFHGEIPQEIGNLY--RLEKLELSNNSFSGTI 102
                                        +               L K  ++++    +I
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

Query: 103 PTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQ------------- 149
             +     + T +   +N +   + K +  L KL+   +  +    +             
Sbjct: 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234

Query: 150 ------LPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGS 203
                       NL  L  + +       K+PT L  L  +  +NV  N+          
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 204 LP-FDILVNLPNLKKLCIAENNF-VGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLK 261
                       ++ + I  NN     +  SL     L +LE   NQ EGK+   F S  
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353

Query: 262 NLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGI-I 320
            LA LNL  N +                    ++P +    +  + +     N++  I  
Sbjct: 354 KLASLNLAYNQIT-------------------EIPANFCGFTEQVENLSFAHNKLKYIPN 394

Query: 321 HFGIRNLVNLIALGMQSNQLHG-------TIPDVIGELKNLQILSLFGNFLHGSIPSSLG 373
            F  +++  + A+    N++          +     +  N+  ++L  N +         
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

Query: 374 NLTKLANLELSSNSLQG-------NIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTL 426
             + L+++ L  N L         +   +  N   L   D     LT  L     + T  
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLP 513

Query: 427 SL-YLDLSHNLLNG--SLLLQVGNLKNLIL---LDISGNQFSGVIPVTLS 470
            L  +DLS+N  +   +  L    LK   +    D  GN+     P  ++
Sbjct: 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  198 bits (505), Expect = 5e-57
 Identities = 77/450 (17%), Positives = 139/450 (30%), Gaps = 55/450 (12%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
           T++   +  I   +S  V  L+ LR   + ++ F  E   E                   
Sbjct: 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYK 239

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLT--------GQLPD 152
           T         +LT + V N     ++P  + +L ++Q + +  N            Q   
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 153 FVGNLSALQVIYIRGNSL-GGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVN 211
                  +Q+IYI  N+L    + T+L  ++ L  L    NQ        G LP     +
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL------EGKLP--AFGS 351

Query: 212 LPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKV-SIDFSSLKNLAVLNLER 270
              L  L +A N       +       +E L  A N+ +      D  S+  ++ ++   
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411

Query: 271 NNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNL 330
           N +             +   +   L  +     + ++   +  NQI             L
Sbjct: 412 NEI-----------GSVDGKNFDPLDPTPFKGIN-VSSINLSNNQISKFPKELFSTGSPL 459

Query: 331 IALGMQSNQLHG-------TIPDVIGELKNLQILSLFGNFLHGSIPS-SLGNLTKLANLE 382
            ++ +  N L            +       L  + L  N L           L  L  ++
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 383 LSSNSLQGNIPLSVGNCQNLIGFDASHIT------LTGALPQQLLSITTLSLYLDLSHNL 436
           LS NS     P    N   L GF   +             P+ +    +L+  L +  N 
Sbjct: 520 LSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT-QLQIGSND 577

Query: 437 LNGSLLLQVGNLKNLILLDISGNQFSGVIP 466
           +     +      N+ +LDI  N    +  
Sbjct: 578 IRK---VNEKITPNISVLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  185 bits (472), Expect = 3e-52
 Identities = 60/442 (13%), Positives = 132/442 (29%), Gaps = 73/442 (16%)

Query: 43  LDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF---- 98
            +    +          NL  L  + + +     ++P  +  L  ++ + ++ N      
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 99  ----SGTIPTNLSRCSELTHLRVANNKL-EGQIPKEIGSLLKLQTLALYYNNLTGQLPDF 153
                     +     ++  + +  N L    +   +  + KL  L   YN L G+LP F
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF 349

Query: 154 VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLP 213
            G+   L  + +  N +        G    +  L+   N+  Y+ +           ++ 
Sbjct: 350 -GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD------AKSVS 402

Query: 214 NLKKLCIAENNFVG-------SIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVL 266
            +  +  + N            +  +     N+  + L+ NQ        FS+   L+ +
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 267 NLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIH-FGIR 325
           NL  N L           T +   S      +  N    +T   +  N++  +   F   
Sbjct: 463 NLMGNML-----------TEIPKNSLKDENENFKNTYL-LTSIDLRFNKLTKLSDDFRAT 510

Query: 326 NLVNLIALGMQSNQLHGTIPDVIGELKNLQILSL------FGNFLHGSIPSSLGNLTKLA 379
            L  L+ + +  N      P        L+   +       GN      P  +     L 
Sbjct: 511 TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569

Query: 380 NLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSL-YLDLSHNLLN 438
            L++ SN ++                          + +++      ++  LD+  N   
Sbjct: 570 QLQIGSNDIRK-------------------------VNEKITP----NISVLDIKDNPNI 600

Query: 439 GSLLLQVGNLKNLILLDISGNQ 460
              L  V       +  +  ++
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  162 bits (412), Expect = 6e-44
 Identities = 69/383 (18%), Positives = 135/383 (35%), Gaps = 44/383 (11%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFH--------GEIPQEIGNLYRLEKLE 92
           T++++ N      L  ++  L  ++ IN++ N            +   +     +++ + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 93  LSNNSF-SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLP 151
           +  N+  +  + T+L +  +L  L    N+LEG++P   GS +KL +L L YN +T    
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPA 370

Query: 152 DFVGNLSALQVIYIRGNSLGGKIPTTLGL--LRNLVYLNVNENQFWYVSSFSGSLPFDIL 209
           +F G    ++ +    N L   IP       +  +  ++ + N+   V   +        
Sbjct: 371 NFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 210 VNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEG-------KVSIDFSSLKN 262
               N+  + ++ N       +  S  S L  + L GN             + +F +   
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 263 LAVLNLERNNLGIGTANDLGFVTFLTNCSSLK-----------LPHSIANLSS-----TM 306
           L  ++L  N L    ++D       T    L             P    N S+       
Sbjct: 490 LTSIDLRFNKLT-KLSDDFRA----TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIR 544

Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366
                 GN+ L     GI    +L  L + SN +   + + I    N+ +L +  N    
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNIS 601

Query: 367 SIPSSLGNLTKLANLELSSNSLQ 389
              S +    +     L  +  Q
Sbjct: 602 IDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 14/116 (12%), Positives = 29/116 (25%), Gaps = 5/116 (4%)

Query: 362 NFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQL- 420
           +        SL +  ++  L L      G +P ++G    L                   
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 421 --LSITTLSLYLDLSHNLLNGSLL--LQVGNLKNLILLDISGNQFSGVIPVTLSIC 472
             +S                 + +      +  +LI   I+ +     I  +  I 
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  198 bits (506), Expect = 9e-57
 Identities = 96/462 (20%), Positives = 168/462 (36%), Gaps = 30/462 (6%)

Query: 38  QRVTELDLSNQRIGGVLSP--YVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSN 95
           + + EL LSN +I  + S    +   S L+ + LS N      P     + RL  L L+N
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 96  NSFSGTIPTNLS---RCSELTHLRVANNKLEGQIPKEIGSL--LKLQTLALYYNNLTGQL 150
                ++   L      + + +L ++N++L          L    L  L L YNNL    
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 151 PDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSG--SLPFDI 208
            D    L  L+  ++  N++      +L  L N+ YLN+  +      S +    +    
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 209 LVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKV--SIDFSSLKN--LA 264
              L  L+ L + +N+  G   +  +   NL+ L L+ +    +   +  F SL +  L 
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 265 VLNLERNNLGIGTANDLGFVTFLT------NCSSLKLPHSIANLSSTMTHFYIGGNQILG 318
           +LNL +N +    ++   ++  L       N    +L          +   Y+  N+ L 
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 319 IIHFGIRNLVNLIALGMQSNQLHG--TIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLT 376
           +       + +L  L ++   L    + P     L+NL IL L  N +       L  L 
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504

Query: 377 KLANLELSSNSLQ--------GNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSL 428
           KL  L+L  N+L         G     +    +L   +           +    +  L  
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK- 563

Query: 429 YLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470
            +DL  N LN        N  +L  L++  N  + V      
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  192 bits (489), Expect = 2e-54
 Identities = 78/442 (17%), Positives = 144/442 (32%), Gaps = 42/442 (9%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
              D S+ ++  V        + +  +NL+ N              +L  L++  N+ S 
Sbjct: 7   EVADCSHLKLTQVPD---DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160
             P    +   L  L + +N+L     K       L  L L  N++     +       L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 161 QVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCI 220
             + +  N L      T   L NL  L ++ N+   + S         +    +LKKL +
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD-----IFANSSLKKLEL 178

Query: 221 AENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFS---SLKNLAVLNLERNNLGIGT 277
           + N      P        L  L L   Q    ++       +  ++  L+L  + L    
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL---- 234

Query: 278 ANDLGFVTFLTNCSSLKLPHSIANLSST-MTHFYIGGNQILGIIHFGIRNLVNLIALGMQ 336
                         S     +   L  T +T   +  N +  + +     L  L    ++
Sbjct: 235 --------------STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280

Query: 337 SNQLHGTIPDVIGELKNLQILSLFGNFLHGSI---------PSSLGNLTKLANLELSSNS 387
            N +       +  L N++ L+L  +F   SI           S   L  L +L +  N 
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340

Query: 388 LQGNIPLSVGNCQNLIGFDASH--ITLTGALPQQLLSITTLSL-YLDLSHNLLNGSLLLQ 444
           + G          NL     S+   +L     +  +S+    L  L+L+ N ++      
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400

Query: 445 VGNLKNLILLDISGNQFSGVIP 466
              L +L +LD+  N+    + 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  172 bits (438), Expect = 2e-47
 Identities = 80/436 (18%), Positives = 155/436 (35%), Gaps = 39/436 (8%)

Query: 38  QRVTELDLSNQRIGGVLSPYVG---NLSFLRYINLSDNGFHGEIPQEIGNL--YRLEKLE 92
            R+  L L+N ++G  L+  +      + +R ++LS++            L    L  L+
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 93  LSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQL-- 150
           LS N+ +     + +   +L +  +  N ++      +  L  ++ L L  +     +  
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 151 -------PDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGS 203
                        L  L+ + +  N + G        L NL YL+++ +          +
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS-----LRT 369

Query: 204 LPFDILVNLPN--LKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSL 260
           L  +  V+L +  L  L + +N       D+ S   +LE+L+L  N+   +++   +  L
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 261 KNLAVLNLERNNLGIGTANDLGFVTFLT-------NCSSL-KLPHSIANLSSTMTHFYIG 312
           +N+  + L  N     T N    V  L           ++   P     L + +T   + 
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN-LTILDLS 488

Query: 313 GNQILGIIHFGIRNLVNLIALGMQSNQLH--------GTIPDVIGELKNLQILSLFGNFL 364
            N I  I    +  L  L  L +Q N L         G     +  L +L IL+L  N  
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

Query: 365 HGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSIT 424
                    +L +L  ++L  N+L         N  +L   +     +T    +      
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 425 TLSLYLDLSHNLLNGS 440
                LD+  N  + +
Sbjct: 609 RNLTELDMRFNPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  164 bits (416), Expect = 2e-44
 Identities = 79/430 (18%), Positives = 147/430 (34%), Gaps = 53/430 (12%)

Query: 34  GHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLEL 93
           G +   +T LDLS   +  V +     L  L Y  L  N         +  L+ +  L L
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 94  SNNSFSGTIPTN---------LSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYN 144
             +    +I                  L HL + +N + G        L+ L+ L+L  +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 145 NLTGQLPD---FVG-NLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSF 200
             + +      FV    S L ++ +  N +          L +L  L++  N+       
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI------ 417

Query: 201 SGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID--FS 258
              L       L N+ ++ ++ N ++    +S +   +L+ L L     +   S    F 
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477

Query: 259 SLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI-- 316
            L+NL +L+L  NN+                 +++     +  L   +    +  N +  
Sbjct: 478 PLRNLTILDLSNNNI-----------------ANIN-DDMLEGLEK-LEILDLQHNNLAR 518

Query: 317 ------LGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPS 370
                  G   + ++ L +L  L ++SN       +V  +L  L+I+ L  N L+    S
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 371 SLGNLTKLANLELSSNSLQGNIPLSVG-NCQNLIGFDASHITLTGALPQQLLSITTLSLY 429
              N   L +L L  N +        G   +NL   D               SI     +
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE----SIAWFVNW 634

Query: 430 LDLSHNLLNG 439
           ++ +H  +  
Sbjct: 635 INETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  141 bits (358), Expect = 2e-36
 Identities = 75/366 (20%), Positives = 119/366 (32%), Gaps = 38/366 (10%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
           T+  +S   +  +       L  L ++N+ DN   G        L  L+ L LSN+  S 
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 101 TIPTNLS----RCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLP-DFVG 155
              TN +      S L  L +  NK+          L  L+ L L  N +  +L      
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 156 NLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNL 215
            L  +  IY+  N        +  L+ +L  L +       V S            L NL
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS-----PFQPLRNL 482

Query: 216 KKLCIAENNFVGSIPDSLSNASNLELLELAGNQ--------FEGKVSIDFSSLKNLAVLN 267
             L ++ NN      D L     LE+L+L  N           G        L +L +LN
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 268 LERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNL 327
           LE N               +             +L   +    +G N +  +      N 
Sbjct: 543 LESNGF-----------DEIP-------VEVFKDLFE-LKIIDLGLNNLNTLPASVFNNQ 583

Query: 328 VNLIALGMQSNQLHGTIPDVIGE-LKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSN 386
           V+L +L +Q N +      V G   +NL  L +  N    +  S    +  +     +  
Sbjct: 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIP 643

Query: 387 SLQGNI 392
            L  + 
Sbjct: 644 ELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  135 bits (343), Expect = 2e-34
 Identities = 70/340 (20%), Positives = 109/340 (32%), Gaps = 57/340 (16%)

Query: 136 LQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195
            +     +  LT Q+PD +   + + V+ +  N L             L  L+V  N   
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSI 255
                   L  ++   LP LK L +  N        + +  +NL  L L  N  +   + 
Sbjct: 63  -------KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 256 DFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQ 315
            F   KNL  L+L  N L                 SS K   +   L + +    +  N+
Sbjct: 116 PFVKQKNLITLDLSHNGL-----------------SSTK-LGTQVQLEN-LQELLLSNNK 156

Query: 316 ILGIIH--FGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLG 373
           I  +      I    +L  L + SNQ+    P     +  L  L L    L  S+   L 
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 374 ---NLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYL 430
                T + NL LS++ L      +    +                       T L+  L
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKW----------------------TNLT-ML 253

Query: 431 DLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470
           DLS+N LN         L  L    +  N    +   +L 
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.9 bits (234), Expect = 1e-20
 Identities = 46/184 (25%), Positives = 71/184 (38%), Gaps = 25/184 (13%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
           +CS LKL     +L + +T   +  NQ+  +          L +L +  N +    P++ 
Sbjct: 10  DCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC 69

Query: 349 GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS 408
            +L  L++L+L  N L      +    T L  L L SNS+Q          +NLI     
Sbjct: 70  QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI----- 124

Query: 409 HITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVT 468
                                LDLSHN L+ + L     L+NL  L +S N+   +    
Sbjct: 125 --------------------TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164

Query: 469 LSIC 472
           L I 
Sbjct: 165 LDIF 168

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 4/118 (3%)

Query: 353 NLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITL 412
           + ++       L   +P  L   T +  L L+ N L+     +      L   D    T+
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 413 TGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470
           +   P+    +  L   L+L HN L+           NL  L +  N    +      
Sbjct: 62  SKLEPELCQKLPMLK-VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  191 bits (487), Expect = 1e-54
 Identities = 87/470 (18%), Positives = 160/470 (34%), Gaps = 43/470 (9%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
              LDLS   +  + S    +   L+ ++LS             +L  L  L L+ N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG-QLPDFVGNLS 158
                  S  S L  L      L       IG L  L+ L + +N +   +LP++  NL+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNL----VYLNVNENQFWYVS---------------- 198
            L+ + +  N +     T L +L  +    + L+++ N   ++                 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 199 -SFSGSLPFDILVNLPNLKKLCIAENNFVGS------IPDSLSNASNLELLELAGNQFEG 251
              S ++    +  L  L+   +    F            +L    NL + E      + 
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 252 KVSID---FSSLKNLAVLNLERNNLGIGTANDLGFVTFLT--NCSSLKLPHSIANLSSTM 306
            +      F+ L N++  +L      I    D  +          + K          ++
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVT--IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLH--GTIPDVIGELKNLQILSLFGNFL 364
                  N+          +L +L  L +  N L   G          +L+ L L  N +
Sbjct: 328 KRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 365 HGSIPSSLGNLTKLANLELSSNSLQGNIPLSV-GNCQNLIGFDASHITLTGALPQQLLSI 423
              + S+   L +L +L+   ++L+     SV  + +NLI  D SH     A       +
Sbjct: 386 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 424 TTLSLYLDLSHNLLNGSLLLQV-GNLKNLILLDISGNQFSGVIPVTLSIC 472
           ++L   L ++ N    + L  +   L+NL  LD+S  Q   + P   +  
Sbjct: 445 SSLE-VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  157 bits (400), Expect = 2e-42
 Identities = 91/470 (19%), Positives = 154/470 (32%), Gaps = 46/470 (9%)

Query: 41  TELDLS-NQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLE----KLELSN 95
            EL+++ N      L  Y  NL+ L +++LS N        ++  L+++      L+LS 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 96  NSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKE-IGSLLKLQTLALYYNNLTGQL---- 150
           N  +  I     +   L  L + NN     + K  I  L  L+   L       +     
Sbjct: 187 NPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 151 --PDFVGNLSALQVIYIRGNSL---GGKIPTTLGLLRNLVYLNVNENQFWYVSSFS---- 201
                +  L  L +   R   L      I      L N+   ++       V  FS    
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 202 -----------GSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ-- 248
                      G  P   L +L  L        +  G    S  +  +LE L+L+ N   
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 249 FEGKVSIDFSSLKNLAVLNLERNNL-----GIGTANDLGFVTFLTNCSSLKLPHSIANLS 303
           F+G  S       +L  L+L  N +            L  + F  +        S+    
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTI-PDVIGELKNLQILSLFGN 362
             + +  I         +     L +L  L M  N       PD+  EL+NL  L L   
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 363 FLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLS 422
            L    P++  +L+ L  L +S N+             +L   D S   +  +  Q+L  
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 423 ITTLSLYLDLSHNLLNGSLLLQ--VGNLKNLILLDISGNQFSGVIPVTLS 470
             +   +L+L+ N    +   Q  +  +K+   L +   +     P    
Sbjct: 541 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  137 bits (347), Expect = 3e-35
 Identities = 78/395 (19%), Positives = 132/395 (33%), Gaps = 39/395 (9%)

Query: 93  LSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD 152
               +F   IP NL       +L ++ N L         S  +LQ L L    +      
Sbjct: 14  CMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 153 FVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNL 212
              +LS L  + + GN +          L +L  L   E           SL    + +L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-------ASLENFPIGHL 123

Query: 213 PNLKKLCIAENNFVG-SIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNL----AVLN 267
             LK+L +A N      +P+  SN +NLE L+L+ N+ +     D   L  +      L+
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 268 LERNNLGIGTANDLGFVTFLT-----NCSSLKLPHSIANLSSTMTHFYIGGNQILG---I 319
           L  N +          +         N  SL +  +     + +    +   +      +
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 320 IHFGIRNLVNLIALGMQSNQL------HGTIPDVIGELKNLQILSLFGNFLHGSIPSSLG 373
             F    L  L  L ++  +L         I D+   L N+   SL    +      S  
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS-- 301

Query: 374 NLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLS 433
                 +LEL +        L + + + L     +  +  G      + + +L  +LDLS
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRL-----TFTSNKGGNAFSEVDLPSLE-FLDLS 355

Query: 434 HNLLN--GSLLLQVGNLKNLILLDISGNQFSGVIP 466
            N L+  G          +L  LD+S N    +  
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (264), Expect = 2e-24
 Identities = 42/205 (20%), Positives = 76/205 (37%), Gaps = 10/205 (4%)

Query: 41  TELDLSNQRIGGVLSPYV-GNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
             LD  +  +  +    V  +L  L Y+++S              L  LE L+++ NSF 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 100 GTIPTN-LSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS 158
                +  +    LT L ++  +LE   P    SL  LQ L + +NN           L+
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 159 ALQVIYIRGNSLGGKIPTTLG-LLRNLVYLNVNENQFWYVSSFSGSLPFDILVN-LPNLK 216
           +LQV+    N +       L     +L +LN+ +N F      + +      +  + + +
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF------ACTCEHQSFLQWIKDQR 572

Query: 217 KLCIAENNFVGSIPDSLSNASNLEL 241
           +L +       + P        L L
Sbjct: 573 QLLVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.6 bits (246), Expect = 3e-22
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 4/186 (2%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
            C  L       NL  +  +  +  N +  +  +   +   L  L +   ++        
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 349 GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS 408
             L +L  L L GN +      +   L+ L  L     +L       +G+ + L   + +
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 409 HITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNL----ILLDISGNQFSGV 464
           H  +      +  S  T   +LDLS N +       +  L  +    + LD+S N  + +
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 465 IPVTLS 470
            P    
Sbjct: 193 QPGAFK 198

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  190 bits (485), Expect = 4e-53
 Identities = 83/537 (15%), Positives = 160/537 (29%), Gaps = 100/537 (18%)

Query: 11  DPSGVTSSWNNTINLCQWMGVTCG--HRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYIN 68
           + +  + +WN    L  W          + RVT L L+     G +   +G L+ L+ ++
Sbjct: 294 NNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLS 353

Query: 69  LSDNGFHGEIP-------------------------QEIGNLYRLEKLELSNNSFS---- 99
              +                                  +    RL   +L  ++ +    
Sbjct: 354 FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413

Query: 100 -GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG---------- 148
              I  +     + T +    N++   I K I  L KLQ +    +  T           
Sbjct: 414 MKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472

Query: 149 ---------QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSS 199
                           NL  L  + +       ++P  L  L  L  LN+  N+    + 
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532

Query: 200 FSGSLP--FDILVNLPNLKKLCIAENNFVG-SIPDSLSNASNLELLELAGNQFEGKVSID 256
                    D     P ++   +  NN        SL     L LL+   N+      ++
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---HLE 589

Query: 257 -FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQ 315
            F +   L  L L+ N +                    ++P      +  +       N+
Sbjct: 590 AFGTNVKLTDLKLDYNQIE-------------------EIPEDFCAFTDQVEGLGFSHNK 630

Query: 316 ILGI-IHFGIRNLVNLIALGMQSNQLHGTIPDV-----IGELKNLQILSLFGNFLHGSIP 369
           +  I   F  +++  + ++    N++     ++       +  N   ++L  N +     
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690

Query: 370 SSLGNLTKLANLELSSNSLQ-------GNIPLSVGNCQNLIGFDASHITLTGALPQQLLS 422
                 + ++ + LS+N +             +  N   L   D     LT  L     +
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRA 749

Query: 423 ITTLSL-YLDLSHNLLNGSLLLQVGNLKNLILLDI------SGNQFSGVIPVTLSIC 472
            T   L  +D+S+N  + S   Q  N   L    I       GN+     P  ++ C
Sbjct: 750 TTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  183 bits (467), Expect = 1e-50
 Identities = 66/452 (14%), Positives = 131/452 (28%), Gaps = 70/452 (15%)

Query: 39  RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF 98
           + T++     RI   +S  +  L+ L+ I  +++ F  +           E         
Sbjct: 426 KDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQ 479

Query: 99  SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG---------Q 149
                 + S   +LT + + N     Q+P  +  L +LQ+L +  N             +
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 150 LPDFVGNLSALQVIYIRGNSLGG-KIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDI 208
           L D       +Q+ Y+  N+L       +L  +  L  L+   N+  ++ +F        
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFG------- 592

Query: 209 LVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEG-KVSIDFSSLKNLAVLN 267
                 L  L +  N       D  +    +E L  + N+ +      +  S+  +  ++
Sbjct: 593 --TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650

Query: 268 LERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNL 327
              N +    +        + +   +             +   +  N+I           
Sbjct: 651 FSYNKI---GSEGRNISCSMDDYKGINA-----------STVTLSYNEIQKFPTELFATG 696

Query: 328 VNLIALGMQSNQL-------HGTIPDVIGELKNLQILSLFGNFLHGSIPSSL--GNLTKL 378
             +  + + +N +                    L  + L  N L  S+        L  L
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755

Query: 379 ANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLN 438
           +N+++S N      P    N   L  F   H                     D   N + 
Sbjct: 756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH-------------------QRDAEGNRIL 795

Query: 439 GSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470
                 +    +LI L I  N    V      
Sbjct: 796 RQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP 827

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  123 bits (311), Expect = 3e-30
 Identities = 53/359 (14%), Positives = 108/359 (30%), Gaps = 55/359 (15%)

Query: 41  TELDLSNQRIGGV-LSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
               +    +     S  +  +  L  ++   N       +  G   +L  L+L  N   
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE 608

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPK--EIGSLLKLQTLALYYNNLTGQLPDFVGNL 157
                  +   ++  L  ++NKL+  IP      S+  + ++   YN +  +  +   ++
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 158 SA-----LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNL 212
                     + +  N +             +  + ++ N          S+P       
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-------TSIP------- 713

Query: 213 PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEG-KVSIDFSSLKNLAVLNLERN 271
                      N +     +  N   L  ++L  N+          ++L  L+ +++  N
Sbjct: 714 ----------ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763

Query: 272 NLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLI 331
                      F T   N S LK                  GN+IL     GI    +LI
Sbjct: 764 CFS-------SFPTQPLNSSQLKAFGIRHQRD-------AEGNRILRQWPTGITTCPSLI 809

Query: 332 ALGMQSNQLHGTIPDVIGELKNLQILSLFGN-FLHGSIPSSLGNLTKLANLELSSNSLQ 389
            L + SN +   + + +     L IL +  N  +   + S    +       L  +  Q
Sbjct: 810 QLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGM-YVLLYDKTQ 864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  172 bits (438), Expect = 1e-47
 Identities = 84/446 (18%), Positives = 157/446 (35%), Gaps = 23/446 (5%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
              L+ S   +  + +     L  L +++L+    +        + +RL+ L L+ N   
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSA 159
               T LS    L HL      +       + +   L++L L  N+++            
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNL--VYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK 217
           L+V+  + N++       +  L+    + LN+N N    +   +         +    + 
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--------DSAVFQS 206

Query: 218 LCIAENNFVGSIPDSLSNAS--NLELLELAGNQFEGKVSIDFSSLKNLAV--LNLERNNL 273
           L       +  I   L N++  +L L        E      F  L  ++V  +NL+++  
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 274 GIGTANDLGFVTFLT-----NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLV 328
              ++N     + L           +LP  +  LS+ +    +  N+   +      N  
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLST-LKKLVLSANKFENLCQISASNFP 325

Query: 329 NLIALGMQSNQLHGTI-PDVIGELKNLQILSLFGNFLHGS--IPSSLGNLTKLANLELSS 385
           +L  L ++ N     +    +  L+NL+ L L  + +  S      L NL+ L +L LS 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 386 NSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV 445
           N        +   C  L   D +   L     Q       L   L+LSH+LL+ S     
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 446 GNLKNLILLDISGNQFSGVIPVTLSI 471
             L  L  L++ GN F        + 
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNS 471

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  170 bits (433), Expect = 5e-47
 Identities = 86/468 (18%), Positives = 156/468 (33%), Gaps = 43/468 (9%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
             L L+   +  +    +     L+++     G        + N   LE L L +N  S 
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYN-NLTGQLPDFVGNLSA 159
                     +L  L   NN +     +++ SL +   L+L  N N    +     + + 
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 160 LQVIYIRGNSLGGKIPTTLGL--LRNLVYLNVNENQFWYVSSFS---------------- 201
            Q +   G      I   L    +++L      +     +S                   
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 202 ---GSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFS 258
               ++  +       L++L +   +    +P  L   S L+ L L+ N+FE    I  S
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 259 SLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKL-----------PHSIANLSSTMT 307
           +  +L  L+++ N          G +  L N   L L              + NLS  + 
Sbjct: 323 NFPSLTHLSIKGNT--KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH-LQ 379

Query: 308 HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD-VIGELKNLQILSLFGNFLHG 366
              +  N+ L +     +    L  L +   +L           L  L++L+L  + L  
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 367 SIPSSLGNLTKLANLELSSNSLQGNIPLSVG---NCQNLIGFDASHITLTGALPQQLLSI 423
           S       L  L +L L  N                  L     S   L+  + Q   + 
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTS 498

Query: 424 TTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSI 471
             +  ++DLSHN L  S +  + +LK +  L+++ N  S ++P  L I
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPI 545

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  163 bits (414), Expect = 2e-44
 Identities = 82/449 (18%), Positives = 153/449 (34%), Gaps = 39/449 (8%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLEL--SN 95
           + +  L L +  I  +  P       L+ ++  +N  H    +++ +L +   L L  + 
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 96  NSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIG--SLLKLQTLALYYNNLTGQLPDF 153
           N  +  I       +    L     +    I K +   ++  L        +     P  
Sbjct: 189 NDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 154 VGNLSA--LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVN 211
              L    ++ I ++ +        T      L  L++              LP   LV 
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-------SELP-SGLVG 299

Query: 212 LPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSLKNLAVLNLER 270
           L  LKKL ++ N F      S SN  +L  L + GN    ++      +L+NL  L+L  
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 271 NNLGIGTANDLGFVTFLTNCSSLKL------------PHSIANLSSTMTHFYIGGNQILG 318
           +++      +L       N S L+               +       +    +   ++  
Sbjct: 360 DDIETSDCCNLQL----RNLSHLQSLNLSYNEPLSLKTEAFKECPQ-LELLDLAFTRLKV 414

Query: 319 IIHFGI-RNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSI---PSSLGN 374
                  +NL  L  L +  + L  +   +   L  LQ L+L GN          +SL  
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 375 LTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSH 434
           L +L  L LS   L      +  + + +   D SH  LT +  + L  +    +YL+L+ 
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK--GIYLNLAS 532

Query: 435 NLLNGSLLLQVGNLKNLILLDISGNQFSG 463
           N ++  L   +  L     +++  N    
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  162 bits (411), Expect = 6e-44
 Identities = 69/441 (15%), Positives = 131/441 (29%), Gaps = 36/441 (8%)

Query: 32  TCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKL 91
            C  +    T  +  N  +  +        +    +  S N            L  L  L
Sbjct: 7   KCIEKEVNKT-YNCENLGLNEIPG---TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFL 62

Query: 92  ELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLP 151
           +L+                 L  L +  N L       +     L+ L      ++    
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

Query: 152 DFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVN 211
             + N   L+ +Y+  N +             L  L+   N           L  + + +
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-------YLSKEDMSS 175

Query: 212 LPNLKKLCIA-ENNFVGSIPDSLSNASNLELLELAGNQFEGKV--SIDFSSLKNLAVLNL 268
           L     L +    N +  I     +++  + L   G Q    +   +  S++++L +   
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 269 ERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLV 328
           E  +       D+    F   C              ++    +  +    I         
Sbjct: 236 EDMDD-----EDISPAVFEGLC------------EMSVESINLQKHYFFNISSNTFHCFS 278

Query: 329 NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSL 388
            L  L + +  L   +P  +  L  L+ L L  N        S  N   L +L +  N+ 
Sbjct: 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 389 QGNI-PLSVGNCQNLIGFDASH--ITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV 445
           +  +    + N +NL   D SH  I  +     QL +++ L   L+LS+N          
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ-SLNLSYNEPLSLKTEAF 396

Query: 446 GNLKNLILLDISGNQFSGVIP 466
                L LLD++  +      
Sbjct: 397 KECPQLELLDLAFTRLKVKDA 417

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  145 bits (369), Expect = 3e-38
 Identities = 70/381 (18%), Positives = 127/381 (33%), Gaps = 31/381 (8%)

Query: 20  NNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSF--LRYINLSDNGFHGE 77
             T NL            Q +      +     +       L    +  INL  + F   
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269

Query: 78  IPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQ 137
                     L++L+L+    S  +P+ L   S L  L ++ NK E        +   L 
Sbjct: 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 138 TLALYYNNLTGQL-PDFVGNLSALQVIYIRGNSLG--GKIPTTLGLLRNLVYLNVNENQF 194
            L++  N    +L    + NL  L+ + +  + +         L  L +L  LN++ N+ 
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 195 WYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDS-LSNASNLELLELAGNQFEGKV 253
                   SL  +     P L+ L +A          S   N   L++L L+ +  +   
Sbjct: 389 -------LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441

Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGG 313
              F  L  L  LNL+ N+       ++     L     L+                +  
Sbjct: 442 EQLFDGLPALQHLNLQGNHF---PKGNIQKTNSLQTLGRLE-------------ILVLSF 485

Query: 314 NQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLG 373
             +  I      +L  +  + +  N+L  +  + +  LK +  L+L  N +   +PS L 
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP 544

Query: 374 NLTKLANLELSSNSLQGNIPL 394
            L++   + L  N L      
Sbjct: 545 ILSQQRTINLRQNPLDCTCSN 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.5 bits (233), Expect = 1e-20
 Identities = 41/252 (16%), Positives = 78/252 (30%), Gaps = 23/252 (9%)

Query: 223 NNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLG 282
           N  +  IP +L   ++ E LE + N      +  FS L NL  L+L R  +         
Sbjct: 21  NLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--------- 69

Query: 283 FVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHG 342
                     +    +  +    +    +  N ++ +    +     L  L      +  
Sbjct: 70  --------YWIH-EDTFQSQHR-LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119

Query: 343 TIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
                +   K L+ L L  N +            KL  L+  +N++       + + Q  
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179

Query: 403 --IGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQ 460
             +  + +   + G  P    S    SL    + NLL     L+   +++L L       
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 461 FSGVIPVTLSIC 472
              + P      
Sbjct: 240 DEDISPAVFEGL 251

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  166 bits (423), Expect = 1e-45
 Identities = 87/470 (18%), Positives = 161/470 (34%), Gaps = 48/470 (10%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
              +DLS   +  + S    N S L++++LS         +    L+ L  L L+ N   
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG-QLPDFVGNLS 158
              P + S  + L +L     KL       IG L+ L+ L + +N +   +LP +  NL+
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNL----VYLNVNENQFWYVSS--------------- 199
            L  + +  N +       L  LR      + L+++ N   ++                 
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213

Query: 200 --FSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLE--------LLELAGNQF 249
              S ++    L NL  L    +    F       +   S +E           L     
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273

Query: 250 EGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPH-SIANLS----S 304
                + F  L N++ ++L   ++       L  V       SL +    +         
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSI-----KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLP 328

Query: 305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELK--NLQILSLFGN 362
            +    +  N+           L +L  L +  N L  +      +L   +L+ L L  N
Sbjct: 329 FLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 363 FLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSV-GNCQNLIGFDASHITLTGALPQQLL 421
                + ++   L +L +L+   ++L+     S   + + L+  D S+           L
Sbjct: 387 GAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 422 SITTLSLYLDLSHNLLNGSLLLQV-GNLKNLILLDISGNQFSGVIPVTLS 470
            +T+L+  L ++ N    + L  V  N  NL  LD+S  Q   +      
Sbjct: 446 GLTSLN-TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (395), Expect = 1e-41
 Identities = 77/442 (17%), Positives = 145/442 (32%), Gaps = 18/442 (4%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
           + L L+   I          L+ L  +   +          IG L  L+KL +++N    
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 101 -TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSL----LKLQTLALYYNNLTGQLPDFVG 155
             +P   S  + L H+ ++ N ++     ++  L        +L +  N +   + D   
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAF 201

Query: 156 NLSALQVIYIRGNSLGGKIPTTLGL-LRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPN 214
               L  + +RGN     I  T    L  L    +   +F    +        I+  L +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE-IFEPSIMEGLCD 260

Query: 215 LKKLCI--AENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNN 272
           +          N            +N+  + LAG   +    +          L++ R  
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF--KWQSLSIIRCQ 318

Query: 273 LGIGTANDLGFVTFLT-NCSSLKLPHSIANLSSTMTHFYIGGNQI--LGIIHFGIRNLVN 329
           L      DL F+  LT   +   +      L S +++  +  N +   G   +      +
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKGSISFKKVALPS-LSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 330 LIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIP-SSLGNLTKLANLELSSNSL 388
           L  L +  N     +      L+ LQ L    + L      S+  +L KL  L++S  + 
Sbjct: 378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 389 QGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNL 448
           + +         +L     +  +        + + TT   +LDLS   L          L
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 449 KNLILLDISGNQFSGVIPVTLS 470
             L LL++S N    +     +
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYN 518

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  153 bits (388), Expect = 8e-41
 Identities = 82/459 (17%), Positives = 158/459 (34%), Gaps = 44/459 (9%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHG-EIPQEIGNLYRLEKLELSNNSFS 99
             L     ++  + S  +G L  L+ +N++ N  H  ++P    NL  L  ++LS N   
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 100 GTIPTNLSRCSELT----HLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLP-DFV 154
                +L    E       L ++ N ++  I  +    +KL  L L  N  +  +    +
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCL 225

Query: 155 GNLSALQVIYIRGNSLGGKIPTT---LGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVN 211
            NL+ L V  +       +         ++  L  + ++E +  Y + FS          
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS--DDIVKFHC 283

Query: 212 LPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFE-------------------GK 252
           L N+  + +A  +      + +      + L +   Q +                   G 
Sbjct: 284 LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS 341

Query: 253 VSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTF-------LTNCSSLKLPHSIANLSST 305
           +S    +L +L+ L+L RN L          +         L+   ++ +  +   L   
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE- 400

Query: 306 MTHFYIGGNQILGIIHFG-IRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFL 364
           + H     + +  +  F    +L  L+ L +           +   L +L  L + GN  
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 365 HGSIPSS-LGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSI 423
             +  S+   N T L  L+LS   L+            L   + SH  L          +
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 424 TTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS 462
            +LS  LD S N +  S  +     K+L   +++ N  +
Sbjct: 521 YSLS-TLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (355), Expect = 2e-36
 Identities = 79/429 (18%), Positives = 130/429 (30%), Gaps = 29/429 (6%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
                 +Q++  V        S  + I+LS N           N   L+ L+LS      
Sbjct: 14  ITYQCMDQKLSKVPD---DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160
                      L++L +  N ++   P     L  L+ L      L       +G L  L
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 161 QVIYIRGNSLGG-KIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
           + + +  N +   K+P     L NLV+++++ N    ++          L   P +    
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND----LQFLRENPQVNLSL 186

Query: 220 IAENNFVGSIPDSLSNASNLELLELAGNQFEGKV-SIDFSSLKNLAVLNLERNNLGIGTA 278
               N +  I D       L  L L GN     +      +L  L V  L          
Sbjct: 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF----- 241

Query: 279 NDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSN 338
            D   +          L         T+  F +               L N+ A+ +   
Sbjct: 242 KDERNLEIFEPSIMEGLCD------VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 339 QLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGN 398
            +     + + +    Q LS+    L       L  L     L L+ N    +I      
Sbjct: 296 SI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKS---LTLTMNKG--SISFKKVA 348

Query: 399 CQNLIGFDASHITLTGALPQQLLSITTLSL-YLDLSHNLLNGSLLLQVGNLKNLILLDIS 457
             +L   D S   L+ +       + T SL +LDLS N     +      L+ L  LD  
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQ 407

Query: 458 GNQFSGVIP 466
            +    V  
Sbjct: 408 HSTLKRVTE 416

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  116 bits (292), Expect = 6e-28
 Identities = 52/330 (15%), Positives = 109/330 (33%), Gaps = 36/330 (10%)

Query: 39  RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF 98
            + E  L+              L+ +  ++L+      +  +++   ++ + L +     
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQL 319

Query: 99  SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNL- 157
                 +L     L  L +  NK    I  +  +L  L  L L  N L+        +L 
Sbjct: 320 KQFPTLDLPF---LKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 158 -SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLK 216
            ++L+ + +  N     +      L  L +L+   +             F   ++L  L 
Sbjct: 375 TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL------KRVTEFSAFLSLEKLL 427

Query: 217 KLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSLKNLAVLNLERNNLGI 275
            L I+  N            ++L  L++AGN F+     + F++  NL  L+L +  L  
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL-- 485

Query: 276 GTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGM 335
                      ++             L   +    +  N +L +       L +L  L  
Sbjct: 486 ---------EQIS-------WGVFDTLHR-LQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 336 QSNQLHGTIPDVIGELKNLQILSLFGNFLH 365
             N++  +   +    K+L   +L  N + 
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.2 bits (206), Expect = 4e-17
 Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 26/183 (14%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
            C   KL     ++ S+  +  +  N +  +  +   N   L  L +   ++        
Sbjct: 17  QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76

Query: 349 GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS 408
             L +L  L L GN +    P S   LT L NL      L       +G    L      
Sbjct: 77  HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK----- 131

Query: 409 HITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV-GNLKNLILLDISGNQFSGVIPV 467
                                L+++HN ++   L     NL NL+ +D+S N    +   
Sbjct: 132 --------------------KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171

Query: 468 TLS 470
            L 
Sbjct: 172 DLQ 174

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  141 bits (358), Expect = 2e-37
 Identities = 91/431 (21%), Positives = 158/431 (36%), Gaps = 60/431 (13%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
             +  L    +         +L  +  +     G   +    +  L  L ++  SNN  +
Sbjct: 26  KMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLT 81

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSA 159
              P  L   ++L  + + NN++    P  + +L  L  L L+ N +T    D + NL+ 
Sbjct: 82  DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--IDPLKNLTN 135

Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
           L  + +  N++     + L  L +L  L+            +   P     NL  L++L 
Sbjct: 136 LNRLELSSNTI--SDISALSGLTSLQQLSFGNQV-------TDLKPLA---NLTTLERLD 183

Query: 220 IAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTAN 279
           I+ N    S    L+  +NLE L    NQ           L NL  L+L  N L      
Sbjct: 184 ISSNKV--SDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQL-----K 234

Query: 280 DLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQ 339
           D+G +  LTN                +T   +  NQI  +       L  L  L + +NQ
Sbjct: 235 DIGTLASLTN----------------LTDLDLANNQISNLAPLS--GLTKLTELKLGANQ 276

Query: 340 LHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC 399
           +    P  +  L  L  L L  N L    P  + NL  L  L L  N++    P+S  + 
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SL 330

Query: 400 QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN 459
             L      +  ++      L ++T ++ +L   HN ++   L  + NL  +  L ++  
Sbjct: 331 TKLQRLFFYNNKVSD--VSSLANLTNIN-WLSAGHNQISD--LTPLANLTRITQLGLNDQ 385

Query: 460 QFSGVIPVTLS 470
            ++       +
Sbjct: 386 AWTNAPVNYKA 396

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  131 bits (332), Expect = 7e-34
 Identities = 91/394 (23%), Positives = 153/394 (38%), Gaps = 48/394 (12%)

Query: 82  IGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLAL 141
              L    K  L   + + T+    +   ++T L+     +  +    +  L  L  +  
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINF 75

Query: 142 YYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFS 201
             N LT      + NL+ L  I +  N +    P  L  L NL  L +  NQ   +    
Sbjct: 76  SNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK 131

Query: 202 GSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLK 261
                    NL NL +L ++ N    S   +LS  ++L+ L       +       ++L 
Sbjct: 132 ---------NLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTD---LKPLANLT 177

Query: 262 NLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPH-------SIANLSSTMTHFYIGGN 314
            L  L++  N +     +D+  +  LTN  SL   +        +  L++ +    + GN
Sbjct: 178 TLERLDISSNKV-----SDISVLAKLTNLESLIATNNQISDITPLGILTN-LDELSLNGN 231

Query: 315 QILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGN 374
           Q+  I      +L NL  L + +NQ+    P  +  L  L  L L  N +    P  L  
Sbjct: 232 QLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285

Query: 375 LTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSH 434
           LT L NLEL+ N L+   P+   N +NL         ++   P  + S+T L   L   +
Sbjct: 286 LTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP--VSSLTKLQ-RLFFYN 340

Query: 435 NLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVT 468
           N ++   +  + NL N+  L    NQ S + P+ 
Sbjct: 341 NKVSD--VSSLANLTNINWLSAGHNQISDLTPLA 372

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  123 bits (311), Expect = 6e-31
 Identities = 80/362 (22%), Positives = 145/362 (40%), Gaps = 43/362 (11%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
            ++ ++N +I  +    + NL+ L  + L +N      P  + NL  L +LELS+N+ S 
Sbjct: 93  VDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD 148

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160
              + LS  + L  L   N   +    K + +L  L+ L +  N ++      +  L+ L
Sbjct: 149 --ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNL 201

Query: 161 QVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCI 220
           + +    N +    P  LG+L NL  L++N NQ   + + +         +L NL  L +
Sbjct: 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLA---------SLTNLTDLDL 250

Query: 221 AENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTAND 280
           A N      P  LS  + L  L+L  NQ         + L  L  L L  N L      D
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL-----ED 301

Query: 281 LGFVTFLTNCSSLKLPH-------SIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIAL 333
           +  ++ L N + L L          +++L+  +   +   N++  +      NL N+  L
Sbjct: 302 ISPISNLKNLTYLTLYFNNISDISPVSSLTK-LQRLFFYNNKVSDVSSLA--NLTNINWL 358

Query: 334 GMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIP 393
               NQ+    P  +  L  +  L L       +  +   N++    ++  + +L     
Sbjct: 359 SAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT 416

Query: 394 LS 395
           +S
Sbjct: 417 IS 418

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 11/146 (7%)

Query: 322 FGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANL 381
           F    L   +   +    +  T+     +L  +  L      +       +  L  L  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQI 73

Query: 382 ELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSL 441
             S+N L    PL   N   L+    ++  +    P  L ++T L+  L L +N +    
Sbjct: 74  NFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLT-GLTLFNNQITD-- 126

Query: 442 LLQVGNLKNLILLDISGNQFSGVIPV 467
           +  + NL NL  L++S N  S +  +
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISAL 152

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (348), Expect = 7e-37
 Identities = 82/372 (22%), Positives = 137/372 (36%), Gaps = 51/372 (13%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS 97
                  L    +  V       L  +  + ++         Q I  L  LE L L+ N 
Sbjct: 22  AEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQ 77

Query: 98  FSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNL 157
            +   P  LS   +LT+L +  NK+       + +L  L+ L L  +N++      + NL
Sbjct: 78  ITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD--ISPLANL 131

Query: 158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK 217
           + +  + +  N       + L  +  L YL V E++   V+  +         NL +L  
Sbjct: 132 TKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPIA---------NLTDLYS 181

Query: 218 LCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGT 277
           L +  N      P  L++ ++L       NQ         +++  L  L +  N +    
Sbjct: 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITD-- 235

Query: 278 ANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQS 337
                 ++ L N S L             T   IG NQI  I    +++L  L  L + S
Sbjct: 236 ------LSPLANLSQL-------------TWLEIGTNQISDIN--AVKDLTKLKMLNVGS 274

Query: 338 NQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVG 397
           NQ+  +   V+  L  L  L L  N L       +G LT L  L LS N +    PL+  
Sbjct: 275 NQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA-- 330

Query: 398 NCQNLIGFDASH 409
           +   +   D ++
Sbjct: 331 SLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (347), Expect = 8e-37
 Identities = 81/381 (21%), Positives = 145/381 (38%), Gaps = 52/381 (13%)

Query: 82  IGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLAL 141
             +L    +  L   S +  +         +T L VA  K+     + I  L  L+ L L
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNL 73

Query: 142 YYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFS 201
             N +T      + NL  L  +YI  N +     + L  L NL  L +NE+    +S  +
Sbjct: 74  NGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISPLA 129

Query: 202 GSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLK 261
                    NL  +  L +  N+ + S    LSN + L  L +  ++ +       ++L 
Sbjct: 130 ---------NLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD--VTPIANLT 177

Query: 262 NLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIH 321
           +L  L+L  N +          ++ L + +SL              +F    NQI  I  
Sbjct: 178 DLYSLSLNYNQIE--------DISPLASLTSL-------------HYFTAYVNQITDITP 216

Query: 322 FGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANL 381
               N+  L +L + +N++    P  +  L  L  L +  N +  S  +++ +LTKL  L
Sbjct: 217 VA--NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKML 270

Query: 382 ELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSL 441
            + SN +     L+  N   L     ++  L     + +  +T L+  L LS N +    
Sbjct: 271 NVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLT-TLFLSQNHITD-- 325

Query: 442 LLQVGNLKNLILLDISGNQFS 462
           +  + +L  +   D +     
Sbjct: 326 IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  116 bits (293), Expect = 3e-29
 Identities = 67/359 (18%), Positives = 130/359 (36%), Gaps = 52/359 (14%)

Query: 112 LTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLG 171
              L      +    P     L +     L   ++T  +      L ++  + + G  + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV- 56

Query: 172 GKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPD 231
                 +  L NL YLN+N NQ   +S  S         NL  L  L I  N    +   
Sbjct: 57  -ASIQGIEYLTNLEYLNLNGNQITDISPLS---------NLVKLTNLYIGTNKI--TDIS 104

Query: 232 SLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS 291
           +L N +NL  L L  +          ++L  +  LNL  N+                   
Sbjct: 105 ALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHN------------------ 144

Query: 292 SLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGEL 351
            L     ++N++  + +  +  +++  +      NL +L +L +  NQ+    P  +  L
Sbjct: 145 -LSDLSPLSNMTG-LNYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQIEDISP--LASL 198

Query: 352 KNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHIT 411
            +L   + + N +    P  + N+T+L +L++ +N +    PL   N   L   +     
Sbjct: 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQ 254

Query: 412 LTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470
           ++      +  +T L   L++  N ++   +  + NL  L  L ++ NQ        + 
Sbjct: 255 ISD--INAVKDLTKLK-MLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  137 bits (347), Expect = 2e-35
 Identities = 87/444 (19%), Positives = 152/444 (34%), Gaps = 28/444 (6%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
              LDLS   +  + S    +   L+ ++LS             +L  L  L L+ N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLT-GQLPDFVGNLS 158
                  S  S L  L      L       IG L  L+ L + +N +   +LP++  NL+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNL----VYLNVNENQFWYVSSFSGSLPFDILVNLPN 214
            L+ + +  N +     T L +L  +    + L+++ N           +       +  
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-------NFIQPGAFKEI-R 201

Query: 215 LKKLCIAENNFVGSIPD-SLSNASNLELLELAGNQFEGK---VSIDFSSLKNLAVLNLER 270
           L KL +  N    ++    +   + LE+  L   +F  +      D S+L+ L  L +E 
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 271 NNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGN------QILGIIHFGI 324
             L          +      +++     ++     +  F                  F  
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 325 RNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLH--GSIPSSLGNLTKLANLE 382
             L +L  L   SN+      +V  +L +L+ L L  N L   G    S    T L  L+
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 383 LSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLL 442
           LS N +   +  +    + L   D  H  L       +       +YLD+SH     +  
Sbjct: 380 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 443 LQVGNLKNLILLDISGNQFSGVIP 466
                L +L +L ++GN F     
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (304), Expect = 1e-29
 Identities = 81/438 (18%), Positives = 152/438 (34%), Gaps = 25/438 (5%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGF-HGEIPQEIGNLYRLEKLELSNNSFS 99
            +L      +  + +  +G+L  L+ +N++ N     ++P+   NL  LE L+LS+N   
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 100 GTIPTNLSRCSELT----HLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD-FV 154
               T+L    ++      L ++ N +   I       ++L  L L  N  +  +    +
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 155 GNLSALQVIYIRGNSLGGK---IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVN 211
             L+ L+V  +       +          L  L  L + E +  Y+  +   +  D+   
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-DLFNC 280

Query: 212 LPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERN 271
           L N+    +             S     + LEL   +F          LK+L  L    N
Sbjct: 281 LTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFG---QFPTLKLKSLKRLTFTSN 335

Query: 272 NLG-IGTANDLGFVTFL----TNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRN 326
             G   +  DL  + FL       S           ++++ +  +  N ++  +      
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG 394

Query: 327 LVNLIALGMQSNQLHGTIP-DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSS 385
           L  L  L  Q + L       V   L+NL  L +       +       L+ L  L+++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 386 NSLQGNIPLSV-GNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQ 444
           NS Q N    +    +NL   D S   L   L     +  +    L+++ N L       
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 445 VGNLKNLILLDISGNQFS 462
              L +L  + +  N + 
Sbjct: 514 FDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 98.6 bits (246), Expect = 3e-22
 Identities = 82/393 (20%), Positives = 131/393 (33%), Gaps = 39/393 (9%)

Query: 93  LSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD 152
               +F   IP NL       +L ++ N L         S  +LQ L L    +      
Sbjct: 14  CMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 153 FVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNL 212
              +LS L  + + GN +          L +L  L   E           SL    + +L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-------SLENFPIGHL 123

Query: 213 PNLKKLCIAENNF-VGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNL----AVLN 267
             LK+L +A N      +P+  SN +NLE L+L+ N+ +     D   L  +      L+
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 268 LERNNL-----GIGTANDLGFVTFLTNCSSLKLPH-SIANLSSTMTH-----FYIGGNQI 316
           L  N +     G      L  +T   N  SL +    I  L+    H      +     +
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 317 LGIIHFGIRNLVNLIALGMQSNQLHG---TIPDVIGELKNLQILSLFGNFLHGSIPSSLG 373
                  +  L NL     +   L      I D+   L N+   SL    +         
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFS 301

Query: 374 NLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLS 433
                 +LEL +        L + + + L     +      A     + + +L  +LDLS
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGNAFS--EVDLPSLE-FLDLS 355

Query: 434 HNLLN--GSLLLQVGNLKNLILLDISGNQFSGV 464
            N L+  G          +L  LD+S N    +
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 75/383 (19%), Positives = 127/383 (33%), Gaps = 43/383 (11%)

Query: 35  HRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQE-IGNLYRLEKLEL 93
                   LDLS   +   + P       L  + L +N     + +  I  L  LE   L
Sbjct: 174 QMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 94  SNNSFSGT---IPTNLSRCSELTHLRVANNKLEG------QIPKEIGSLLKLQTLALYYN 144
               F         + S    L +L +   +L         I      L  + + +L   
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 145 NLTGQLPD-FVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGS 203
            +       +      L+++  +              L++L  L    N+     S    
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNKGGNAFSE--- 343

Query: 204 LPFDILVNLPNLKKLCIAEN--NFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLK 261
                 V+LP+L+ L ++ N  +F G    S    ++L+ L+L+ N     +S +F  L+
Sbjct: 344 ------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE 396

Query: 262 NLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKL---------PHSIANLSSTMTHFYIG 312
            L  L+ + +NL     ++      L N   L +               LSS +    + 
Sbjct: 397 QLEHLDFQHSNLK--QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMA 453

Query: 313 GNQILGIIHFGI-RNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSS 371
           GN         I   L NL  L +   QL    P     L +LQ+L++  N L       
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 372 LGNLTKLANLELSSNSLQGNIPL 394
              LT L  + L +N    + P 
Sbjct: 514 FDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.4 bits (196), Expect = 5e-16
 Identities = 57/312 (18%), Positives = 108/312 (34%), Gaps = 37/312 (11%)

Query: 40  VTELDLSNQRIGGVLSPYV-GNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF 98
           + E  L+           +   L+ +   +L        +     N    + LEL N  F
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKF 316

Query: 99  SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLT--GQLPDFVGN 156
                  L     L  L   +NK      +    L  L+ L L  N L+  G        
Sbjct: 317 GQFPTLKLK---SLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 157 LSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLK 216
            ++L+ + +  N +   + +    L  L +L+   +             F + ++L NL 
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL------KQMSEFSVFLSLRNLI 424

Query: 217 KLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSLKNLAVLNLERNNLGI 275
            L I+  +   +     +  S+LE+L++AGN F+     D F+ L+NL  L+L +  L  
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-- 482

Query: 276 GTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGM 335
                      L+  +   L          +    +  NQ+  +       L +L  + +
Sbjct: 483 ---------EQLSPTAFNSLSS--------LQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525

Query: 336 QSNQLHGTIPDV 347
            +N    + P +
Sbjct: 526 HTNPWDCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 26/183 (14%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
            C  L       NL  +  +  +  N +  +  +   +   L  L +   ++        
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 349 GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS 408
             L +L  L L GN +      +   L+ L  L     +L       +G+ + L      
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK----- 127

Query: 409 HITLTGALPQQLLSITTLSLYLDLSHNLLN-GSLLLQVGNLKNLILLDISGNQFSGVIPV 467
                                L+++HNL+    L     NL NL  LD+S N+   +   
Sbjct: 128 --------------------ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 468 TLS 470
            L 
Sbjct: 168 DLR 170

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  126 bits (318), Expect = 8e-33
 Identities = 60/377 (15%), Positives = 109/377 (28%), Gaps = 57/377 (15%)

Query: 52  GVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSE 111
           G    +  + S    +    +         +    R    + +          +  R + 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN-------RWHSAWRQAN 54

Query: 112 LTHLRVANNKLEG--QIPKEIGSL--LKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRG 167
             + ++              +          L L    L  Q PD    LS LQ + I  
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDA 113

Query: 168 NSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVG 227
             L  ++P T+     L  L +  N          +LP  I  +L  L++L I     + 
Sbjct: 114 AGLM-ELPDTMQQFAGLETLTLARNPL-------RALPASI-ASLNRLRELSIRACPELT 164

Query: 228 SIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFL 287
            +P+ L++                    +   L NL  L LE   +              
Sbjct: 165 ELPEPLASTDASG---------------EHQGLVNLQSLRLEWTGI-------------- 195

Query: 288 TNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDV 347
                  LP SIANL + +    I  + +  +    I +L  L  L ++        P +
Sbjct: 196 -----RSLPASIANLQN-LKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPI 248

Query: 348 IGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDA 407
            G    L+ L L       ++P  +  LT+L  L+L        +P  +           
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 408 SHITLTGALPQQLLSIT 424
                      + ++  
Sbjct: 309 PPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 43/252 (17%), Positives = 88/252 (34%), Gaps = 17/252 (6%)

Query: 226 VGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVT 285
           +GS      ++S  E L   G+          S  +     +  R +     AN      
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 286 FLTNCSSLK-LPHSIANLSST-MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGT 343
                 +LK     + + +        +     L         L +L  + + +  L   
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 344 IPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC---- 399
           +PD + +   L+ L+L  N L  ++P+S+ +L +L  L + +      +P  + +     
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 400 -----QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILL 454
                 NL         +  +LP  + ++  L   L + ++ L+ +L   + +L  L  L
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK-SLKIRNSPLS-ALGPAIHHLPKLEEL 234

Query: 455 DISGNQFSGVIP 466
           D+ G       P
Sbjct: 235 DLRGCTALRNYP 246

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.4 bits (168), Expect = 8e-13
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 2/112 (1%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
             L + N  +   L P + +L  L  ++L         P   G    L++L L + S   
Sbjct: 209 KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD 152
           T+P ++ R ++L  L +       ++P  I  L     + +   +L  QL  
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQ 318

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  129 bits (325), Expect = 4e-32
 Identities = 89/453 (19%), Positives = 163/453 (35%), Gaps = 60/453 (13%)

Query: 59  GNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVA 118
           G ++F R+ NL+      ++PQ    L   E+L LS N       ++     +L  L + 
Sbjct: 6   GRIAFYRFCNLT------QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELG 56

Query: 119 NNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKI--P 175
           +      I KE   +L  L+ L L  + +    PD    L  L  + +    L   +   
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 176 TTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSN 235
                L+ L  L++++NQ   +              L +LK +  + N         L  
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLY------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170

Query: 236 --ASNLELLELAGNQFEGKVSIDFSSLKN------LAVLNLERNNLGIGTANDLGFVTFL 287
                L    LA N    +VS+D+    N      L +L++  N   +    +       
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230

Query: 288 TNCSSLKLPHSIANLS-------------------STMTHFYIGGNQILGIIHFGIRNLV 328
           +   SL L H I                       S++ H  +    +  +       L 
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290

Query: 329 NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSL 388
           +L  L +  N+++    +    L NLQ+L+L  N L     S+   L K+A ++L  N +
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 389 QGNIPLSVGNCQNLIGFDASH-----ITLTGALPQ------QLLSITTLSL---YLDLSH 434
                 +    + L   D        I    ++P       +L+++  ++L    + LS 
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410

Query: 435 NLLNG-SLLLQVGNLKNLILLDISGNQFSGVIP 466
           N L    +L  +  + +L +L ++ N+FS    
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  116 bits (293), Expect = 5e-28
 Identities = 88/467 (18%), Positives = 159/467 (34%), Gaps = 76/467 (16%)

Query: 38  QRVTELDLSNQRIGGV-LSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLY--RLEKLELS 94
           + +T LDLS  +I  + L P  G L+ L+ I+ S N        E+  L    L    L+
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 95  NNSFSGTIPTNLSRCSE------LTHLRVANNKLEGQIPK------------EIGSLLKL 136
            NS    +  +  +C        L  L V+ N     I               +     +
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 137 QTLALYYNNLTGQLPDFVGNL--SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF 194
                 ++N+     +    L  S+++ + +    +          L++L  LN+  N+ 
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 195 WYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVS 254
                    +  +    L NL+ L ++ N        +      +  ++L  N       
Sbjct: 303 -------NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355

Query: 255 IDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPH----SIANLSSTMTHFY 310
             F  L+ L  L+L  N L          + F+ +   + L      ++  ++ T    +
Sbjct: 356 QTFKFLEKLQTLDLRDNALT--------TIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407

Query: 311 IGGNQILGI-IHFGIRNLVNLIALGMQSNQLHGTIPDVI-GELKNLQILSLFGNFLHGSI 368
           +  N++  + I + +  + +L  L +  N+      D    E  +L+ L L  N L  + 
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467

Query: 369 PSSL-----GNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSI 423
            + L       L+ L  L L+ N L                          +LP  + S 
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYLN-------------------------SLPPGVFSH 502

Query: 424 TTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470
            T    L L+ N L  ++L       NL +LDIS NQ     P    
Sbjct: 503 LTALRGLSLNSNRL--TVLSHNDLPANLEILDISRNQLLAPNPDVFV 547

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  112 bits (282), Expect = 1e-26
 Identities = 86/461 (18%), Positives = 158/461 (34%), Gaps = 41/461 (8%)

Query: 41  TELDLSNQRIGGVLSPYV-GNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
             L+L +Q     +      NL  LR ++L  +  +   P     L+ L +L L     S
Sbjct: 51  QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110

Query: 100 GTI--PTNLSRCSELTHLRVANNKLEG-QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGN 156
             +           LT L ++ N++    +    G L  L+++    N +       +  
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170

Query: 157 LSA--LQVIYIRGNSLGGKIPTTLGLLRN------LVYLNVNENQFWYVSSFS-----GS 203
           L    L    +  NSL  ++    G   N      L  L+V+ N +    + +       
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230

Query: 204 LPFDILVNLPNLKKLCIAENNFVGSIPDSLSN--ASNLELLELAGNQFEGKVSIDFSSLK 261
                L+   ++       +N      ++ +    S++  L+L+        S  F +LK
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290

Query: 262 NLAVLNLERNNLG---IGTANDLGFVTFL--TNCSSLKLPHSIANLSSTMTHFYIGGNQI 316
           +L VLNL  N +          L  +  L  +     +L  S       + +  +  N I
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 317 LGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLT 376
             I     + L  L  L ++ N L       I  + ++  + L GN L      +L  + 
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL-----VTLPKIN 400

Query: 377 KLAN-LELSSNSLQGNIPLSV-GNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSH 434
             AN + LS N L+    L       +L     +    +     Q  S       L L  
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 435 NLLNGSLLLQV-----GNLKNLILLDISGNQFSGVIPVTLS 470
           N+L  +   ++       L +L +L ++ N  + + P   S
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.4 bits (227), Expect = 1e-19
 Identities = 83/406 (20%), Positives = 145/406 (35%), Gaps = 50/406 (12%)

Query: 34  GHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLEL 93
           G     V  LDLS+  +  + S     L  L+ +NL+ N  +    +    L  L+ L L
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 94  SNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDF 153
           S N       +N     ++ ++ +  N +     +    L KLQTL L  N LT      
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----T 376

Query: 154 VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLP 213
           +  + ++  I++ GN    K+ T   +      ++++EN+   +           L+ +P
Sbjct: 377 IHFIPSIPDIFLSGN----KLVTLPKINLTANLIHLSENRLENLDILY------FLLRVP 426

Query: 214 NLKKLCIAENNFVGSIPDSL-SNASNLELLELAGNQFEGKVSID-----FSSLKNLAVLN 267
           +L+ L + +N F     D   S   +LE L L  N  +     +     F  L +L VL 
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486

Query: 268 LERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNL 327
           L  N L             L       L          +    +  N++  + H  +   
Sbjct: 487 LNHNYL-----------NSLPPGVFSHLTA--------LRGLSLNSNRLTVLSHNDL--P 525

Query: 328 VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIP-SSLGNLTKLANLELSSN 386
            NL  L +  NQL    PDV     +L +L +  N        S+  N     N+ ++  
Sbjct: 526 ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGP 582

Query: 387 SLQ----GNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSL 428
                       S  +  +L         +  +L   L  + T++L
Sbjct: 583 PADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTL 628

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 36/189 (19%), Positives = 56/189 (29%), Gaps = 6/189 (3%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTI-PDV 347
                 L      L++T     +  N I  +       L  L  L + S     TI  + 
Sbjct: 10  FYRFCNLTQVPQVLNTT-ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 348 IGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNI--PLSVGNCQNLIGF 405
              L NL+IL L  + ++   P +   L  L  L L    L   +       N + L   
Sbjct: 69  FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 406 DASHITLTGALPQQLLSITTLSLYLDLSHNLLNG--SLLLQVGNLKNLILLDISGNQFSG 463
           D S   +                 +D S N +       L+    K L    ++ N    
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188

Query: 464 VIPVTLSIC 472
            + V    C
Sbjct: 189 RVSVDWGKC 197

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (302), Expect = 2e-29
 Identities = 70/424 (16%), Positives = 140/424 (33%), Gaps = 40/424 (9%)

Query: 68  NLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIP 127
           +     F   IP  +     ++ L+LS N  +     +L  C+ L  L + ++++     
Sbjct: 11  DGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 128 KEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGG-KIPTTLGLLRNLVY 186
               SL  L+ L L  N+L+     + G LS+L+ + + GN      + +    L NL  
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 187 LNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAG 246
           L +   +          +       L +L +L I   +       SL +  ++  L L  
Sbjct: 128 LRIGNVE------TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 247 NQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPH--------- 297
           ++    + I    L ++  L L   NL     + L      +    L             
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 298 ---SIANLSSTMTHFYIGGNQILGIIHFGI-----------RNLVNLIALGMQSNQLHGT 343
               +      ++        + G+  F                V +  L +    L   
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 344 IPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNI---PLSVGNCQ 400
           +  V   L+ ++ +++  + +     S   +L  L  L+LS N +           G   
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 401 NLIGFDASH--ITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISG 458
           +L     S   +       + LL++  L   LD+S N  +  +       + +  L++S 
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNL-TSLDISRNTFH-PMPDSCQWPEKMRFLNLSS 419

Query: 459 NQFS 462
               
Sbjct: 420 TGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  115 bits (291), Expect = 5e-28
 Identities = 83/450 (18%), Positives = 157/450 (34%), Gaps = 48/450 (10%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHG-EIPQEIGNLYRLEKLELSNNSFS 99
             LDLS+  +  + S + G LS L+Y+NL  N +    +     NL  L+ L + N    
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 100 GTIPTN-LSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS 158
             I     +  + L  L +    L     + + S+  +  L L+ +     L  F   LS
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL 218
           +++ + +R  +L     + L +      +     +   ++  S +    +L  +  L ++
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 219 CIAEN--NFVGSIPDSLSNA---------SNLELLELAGNQFEGKVSIDFSSLKNLAVLN 267
              +   N +G    S S+            +  L +        +S  +S L+ +  + 
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 268 LERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGII---HFGI 324
           +E + + +   +      F  +  SL+                +  N ++          
Sbjct: 317 VENSKVFLVPCS------FSQHLKSLE-------------FLDLSENLMVEEYLKNSACK 357

Query: 325 RNLVNLIALGMQSNQLH--GTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLE 382
               +L  L +  N L       +++  LKNL  L +  N  H  +P S     K+  L 
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416

Query: 383 LSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLL 442
           LSS  ++    +     Q L   D S+  L  +    L  +      L +S N L    L
Sbjct: 417 LSSTGIRV---VKTCIPQTLEVLDVSNNNLD-SFSLFLPRLQE----LYISRNKL--KTL 466

Query: 443 LQVGNLKNLILLDISGNQFSGVIPVTLSIC 472
                   L+++ IS NQ   V        
Sbjct: 467 PDASLFPVLLVMKISRNQLKSVPDGIFDRL 496

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (261), Expect = 4e-24
 Identities = 56/428 (13%), Positives = 126/428 (29%), Gaps = 51/428 (11%)

Query: 41  TELDLS-NQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
             L +   +    +       L+ L  + +          Q + ++  +  L L  +  +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSA 159
             +       S + +L + +  L       +        +       +    +    L  
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
           L    +  + +                 + N ++   VS           V    +++L 
Sbjct: 246 LLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGK-------VETVTIRRLH 292

Query: 220 IAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTAN 279
           I +      +    S    ++ + +  ++           LK+L  L+L  N +      
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 280 DLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI--LGIIHFGIRNLVNLIALGMQS 337
           +        +  +L L                  N +  +      +  L NL +L +  
Sbjct: 353 NSACKGAWPSLQTLVL----------------SQNHLRSMQKTGEILLTLKNLTSLDISR 396

Query: 338 NQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVG 397
           N  H  +PD     + ++ L+L    +   + +       L  L++S+N+L  +  L + 
Sbjct: 397 NTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFSLFLP 451

Query: 398 NCQNLIGFDASHITLT----GALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLIL 453
             Q L     S   L      +L   L       L + +S N L          L +L  
Sbjct: 452 RLQEL---YISRNKLKTLPDASLFPVL-------LVMKISRNQLKSVPDGIFDRLTSLQK 501

Query: 454 LDISGNQF 461
           + +  N +
Sbjct: 502 IWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 35/188 (18%), Positives = 74/188 (39%), Gaps = 1/188 (0%)

Query: 285 TFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTI 344
           + + +  S       + L++ M    +  N+I  I H  +R   NL  L ++S++++   
Sbjct: 7   SGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 345 PDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG-NIPLSVGNCQNLI 403
            D    L +L+ L L  N L     S  G L+ L  L L  N  Q   +     N  NL 
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 404 GFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG 463
                ++     + +   +  T    L++    L       + +++++  L +  ++ + 
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186

Query: 464 VIPVTLSI 471
           ++ +   I
Sbjct: 187 LLEIFADI 194

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (298), Expect = 3e-29
 Identities = 59/392 (15%), Positives = 125/392 (31%), Gaps = 43/392 (10%)

Query: 78  IPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQ 137
           I +   N  R +  +++++S    + +       +  L ++ N L      ++    KL+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 138 TLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV 197
            L L  N L  +  D   +LS L+ + +  N +       L +  ++  L+   N     
Sbjct: 62  LLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI--- 111

Query: 198 SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEG-KVSID 256
                 +           K + +A N             S ++ L+L  N+ +    +  
Sbjct: 112 ----SRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 257 FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI 316
            +S   L  LNL+ N +      D+          +L L                  N++
Sbjct: 165 AASSDTLEHLNLQYNFI-----YDVKGQVVFAKLKTLDL----------------SSNKL 203

Query: 317 LGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLH-GSIPSSLGNL 375
              +    ++   +  + +++N+L   I   +   +NL+   L GN  H G++       
Sbjct: 204 AF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 376 TKLANLELSSN-SLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSH 434
            ++  +   +   L G                     L      +L+++      L    
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 435 NLLNGSLLLQVGNLKNLILLDISGNQFSGVIP 466
                 L  +  N      +D    Q+  VI 
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVID 353

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (292), Expect = 2e-28
 Identities = 64/449 (14%), Positives = 126/449 (28%), Gaps = 41/449 (9%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS 97
            R     +++  +   L+    +   ++ ++LS N        ++    +LE L LS+N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 98  FSGTIP-----------------TNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA 140
              T+                    L     +  L  ANN +  ++    G     + + 
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSRGQ--GKKNIY 126

Query: 141 LYYNNLTGQLPDFVGNLSALQVIYIRGNSLGG-KIPTTLGLLRNLVYLNVNENQFWYVSS 199
           L  N +T       G  S +Q + ++ N +              L +LN+  N  + V  
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186

Query: 200 FSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSS 259
                     V    LK L ++ N     +     +A+ +  + L  N+    +      
Sbjct: 187 ---------QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 260 LKNLAVLNLERNNLGIGTANDLGF----VTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQ 315
            +NL   +L  N    GT  D       V  +   +  KL        +  T  + G   
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 316 ILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGE----LKNLQILSLFGNFLHGSIPSS 371
              +       L+ L           G+  + +          + +          I   
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355

Query: 372 LGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLD 431
                    LE    +L   +         L G     +     L       + L L   
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLLRA 414

Query: 432 LSHNLLNGSLLLQVGNLKNLILLDISGNQ 460
           +        +  Q      +   D+  ++
Sbjct: 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.3 bits (180), Expect = 4e-14
 Identities = 38/240 (15%), Positives = 86/240 (35%), Gaps = 18/240 (7%)

Query: 228 SIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFL 287
           +I +   N +  ++ ++  +  +  ++    S  N+  L+L  N L   +A DL   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 288 T--NCSS--LKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGT 343
              N SS  L     + +LS+ +    +  N +       +    ++  L   +N +   
Sbjct: 61  ELLNLSSNVLYETLDLESLST-LRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113

Query: 344 IPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG-NIPLSVGNCQNL 402
           +       +  + + L  N +        G  +++  L+L  N +   N      +   L
Sbjct: 114 VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 403 IGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS 462
              +  +  +   +    +    L   LDLS N L   +  +  +   +  + +  N+  
Sbjct: 172 EHLNLQYNFIY-DVK-GQVVFAKLK-TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 15/149 (10%)

Query: 324 IRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL 383
            +N        +  + L   +  +     N++ L L GN L     + L   TKL  L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 384 SSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLS--LYLDLSHNLLNGSL 441
           SSN L   + L   +   L   D ++          +  +        L  ++N ++   
Sbjct: 66  SSNVLYETLDL--ESLSTLRTLDLNN--------NYVQELLVGPSIETLHAANNNISR-- 113

Query: 442 LLQVGNLKNLILLDISGNQFSGVIPVTLS 470
            +     +    + ++ N+ + +  +   
Sbjct: 114 -VSCSRGQGKKNIYLANNKITMLRDLDEG 141

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  116 bits (293), Expect = 6e-29
 Identities = 68/385 (17%), Positives = 124/385 (32%), Gaps = 45/385 (11%)

Query: 78  IPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQ 137
           I   +        + +   +            +    +   N+ +       + S  +++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 138 TLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV 197
            L L    +             +Q +Y+  N++    P     +  L  L +  N     
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL--- 129

Query: 198 SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDF 257
                SLP  I  N P L  L ++ NN      D+    ++L+ L+L+ N+      +D 
Sbjct: 130 ----SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---HVDL 182

Query: 258 SSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQIL 317
           S + +L   N+  N L           + L    +++                   N I 
Sbjct: 183 SLIPSLFHANVSYNLL-----------STLAIPIAVE-------------ELDASHNSI- 217

Query: 318 GIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTK 377
            ++   +   V L  L +Q N L  T    +     L  + L  N L   +      + +
Sbjct: 218 NVVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273

Query: 378 LANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLL 437
           L  L +S+N L   + L       L   D SH  L   + +       L   L L HN +
Sbjct: 274 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE-NLYLDHNSI 330

Query: 438 NGSLLLQVGNLKNLILLDISGNQFS 462
                L++     L  L +S N + 
Sbjct: 331 VT---LKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  109 bits (274), Expect = 2e-26
 Identities = 54/350 (15%), Positives = 119/350 (34%), Gaps = 45/350 (12%)

Query: 42  ELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNNSFSG 100
           ++ +  Q            L+  + +   ++    ++P  +  +  ++E L L++     
Sbjct: 25  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEE 83

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQLPDFVGNLSA 159
                 +    +  L +  N +   +P  +  ++  L  L L  N+L+        N   
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142

Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
           L  + +  N+L      T     +L  L ++ N+          +       +P+L    
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-------THVDLS---LIPSLFHAN 192

Query: 220 IAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTAN 279
           ++ N        +L+    +E L+ + N       +       L +L L+ NNL      
Sbjct: 193 VSYNLL-----STLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNL-----T 239

Query: 280 DLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQ 339
           D  ++        + L                  N++  I++     +  L  L + +N+
Sbjct: 240 DTAWLLNYPGLVEVDL----------------SYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 340 LHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ 389
           L   +      +  L++L L  N L   +  +     +L NL L  NS+ 
Sbjct: 284 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 45/254 (17%), Positives = 90/254 (35%), Gaps = 37/254 (14%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNN 96
             +T L L    +  +      N   L  +++S+N     I  +       L+ L+LS+N
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN 175

Query: 97  SFSGTIP-----------------TNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTL 139
             +  +                  + L+    +  L  ++N +   +       ++L  L
Sbjct: 176 RLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRG--PVNVELTIL 231

Query: 140 ALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSS 199
            L +NNLT        N   L  + +  N L   +      ++ L  L ++ N+   ++ 
Sbjct: 232 KLQHNNLT-DTAWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 289

Query: 200 FSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSS 259
           +           +P LK L ++ N+ +  +  +      LE L L  N      ++  S+
Sbjct: 290 Y--------GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLST 337

Query: 260 LKNLAVLNLERNNL 273
              L  L L  N+ 
Sbjct: 338 HHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 53/261 (20%), Positives = 88/261 (33%), Gaps = 33/261 (12%)

Query: 210 VNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLE 269
           + L N K +    +         L +   +ELL L   Q E   +  F+    +  L + 
Sbjct: 42  ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 101

Query: 270 RNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVN 329
            N +                   L  PH   N+   +T   +  N +  +      N   
Sbjct: 102 FNAI-----------------RYLP-PHVFQNVPL-LTVLVLERNDLSSLPRGIFHNTPK 142

Query: 330 LIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ 389
           L  L M +N L     D      +LQ L L  N L   +   L  +  L +  +S N L 
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 199

Query: 390 GNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLK 449
                ++     +   DASH ++        + +T L     L HN L  +  L   N  
Sbjct: 200 -----TLAIPIAVEELDASHNSINVVRGPVNVELTIL----KLQHNNLTDTAWLL--NYP 248

Query: 450 NLILLDISGNQFSGVIPVTLS 470
            L+ +D+S N+   ++     
Sbjct: 249 GLVEVDLSYNELEKIMYHPFV 269

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 46/241 (19%), Positives = 88/241 (36%), Gaps = 19/241 (7%)

Query: 228 SIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFL 287
            I  +L        + +     +     +  +L N  ++  + + +    A  L     +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 288 T--NCSSLKL----PHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLH 341
              N + L++     ++ A   + +   Y+G N I  +     +N+  L  L ++ N L 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHT-IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 342 GTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQN 401
                +      L  LS+  N L      +    T L NL+LSSN L     + +    +
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPS 187

Query: 402 LIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQF 461
           L   + S+  L+       L+I      LD SHN +N    ++      L +L +  N  
Sbjct: 188 LFHANVSYNLLS------TLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNL 238

Query: 462 S 462
           +
Sbjct: 239 T 239

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 11/157 (7%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNN 96
             +T L L +  +      ++ N   L  ++LS N    +I       + RLE+L +SNN
Sbjct: 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 282

Query: 97  SFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGN 156
                +         L  L +++N L   + +      +L+ L L +N++   L   +  
Sbjct: 283 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LST 337

Query: 157 LSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
              L+ + +  N       +   L RN+    V++  
Sbjct: 338 HHTLKNLTLSHNDW--DCNSLRALFRNVARPAVDDAD 372

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (294), Expect = 1e-28
 Identities = 68/329 (20%), Positives = 121/329 (36%), Gaps = 28/329 (8%)

Query: 62  SFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNK 121
           +  R ++L  N        E  +   LE+LEL+ N  S   P   +    L  L + +N+
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 122 LEGQIPKEI-GSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGL 180
           L+  IP  +   L  L  L +  N +   L     +L  L+ + +  N L          
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 181 LRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLE 240
           L +L  L + +           S+P + L +L  L  L +   N       S      L+
Sbjct: 151 LNSLEQLTLEKCNLT-------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 241 LLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIA 300
           +LE++   +   ++ +     NL  L++   NL                 +++    ++ 
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-----------------TAVP-YLAVR 245

Query: 301 NLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLF 360
           +L   +    +  N I  I    +  L+ L  + +   QL    P     L  L++L++ 
Sbjct: 246 HLVY-LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304

Query: 361 GNFLHGSIPSSLGNLTKLANLELSSNSLQ 389
           GN L     S   ++  L  L L SN L 
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (277), Expect = 2e-26
 Identities = 66/325 (20%), Positives = 103/325 (31%), Gaps = 29/325 (8%)

Query: 65  RYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEG 124
           R +      F   +P+ I        L+L  N          +    L  L +  N +  
Sbjct: 14  RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 125 QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL 184
             P    +L  L+TL L  N L          LS L  + I  N +   +      L NL
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 185 VYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLEL 244
             L V +N           +       L +L++L + + N      ++LS+   L +L L
Sbjct: 131 KSLEVGDNDL-------VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183

Query: 245 AGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSS 304
                       F  L  L VL +                        L           
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPY-------------------LDTMTPNCLYGL 224

Query: 305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFL 364
            +T   I    +  + +  +R+LV L  L +  N +      ++ EL  LQ + L G  L
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 365 HGSIPSSLGNLTKLANLELSSNSLQ 389
               P +   L  L  L +S N L 
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (264), Expect = 1e-24
 Identities = 71/372 (19%), Positives = 119/372 (31%), Gaps = 54/372 (14%)

Query: 91  LELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQL 150
           +      F   +P  +   +E   L +  N+++     E  S   L+ L L  N ++   
Sbjct: 16  VLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 151 PDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILV 210
           P    NL  L+ + +R N L          L NL  L+++EN+          L   +  
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-------VILLDYMFQ 125

Query: 211 NLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLER 270
           +L NLK L + +N+ V     + S  ++LE L L         +   S L  L VL L  
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185

Query: 271 NNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNL 330
            N+    A        L     L++                     L  +       +NL
Sbjct: 186 LNI---NAIRDYSFKRLYRLKVLEI----------------SHWPYLDTMTPNCLYGLNL 226

Query: 331 IALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG 390
            +L +    L       +  L  L+ L+L  N +     S L  L +L  ++L    L  
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA- 285

Query: 391 NIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKN 450
                                    +             L++S N L         ++ N
Sbjct: 286 ------------------------VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 451 LILLDISGNQFS 462
           L  L +  N  +
Sbjct: 322 LETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.8 bits (210), Expect = 8e-18
 Identities = 61/296 (20%), Positives = 109/296 (36%), Gaps = 35/296 (11%)

Query: 179 GLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASN 238
           G+      L++ +N+         +L  D   + P+L++L + EN      P + +N  N
Sbjct: 29  GIPTETRLLDLGKNRI-------KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81

Query: 239 LELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHS 298
           L  L L  N+ +      F+ L NL  L++  N +                   L   + 
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-----------------VILL-DYM 123

Query: 299 IANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILS 358
             +L + +    +G N ++ I H     L +L  L ++   L     + +  L  L +L 
Sbjct: 124 FQDLYN-LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182

Query: 359 LFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQ 418
           L    ++     S   L +L  LE+S       +  +     NL     +H  LT A+P 
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPY 241

Query: 419 QLLSITTLSLYLDLSHNLL----NGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470
             +       +L+LS+N +       L      L  L  + + G Q + V P    
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSML----HELLRLQEIQLVGGQLAVVEPYAFR 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (282), Expect = 5e-28
 Identities = 54/375 (14%), Positives = 113/375 (30%), Gaps = 64/375 (17%)

Query: 78  IPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQ 137
           I +   N  R +  +++++S    + +       +  L ++ N L      ++    KL+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 138 TLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV 197
            L L  N L  +  D   +LS L+ + +  N +       L +  ++  L+   N     
Sbjct: 62  LLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI--- 111

Query: 198 SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDF 257
                 +                                   + + LA N+      +D 
Sbjct: 112 ----SRVSCSRG---------------------------QGKKNIYLANNKITMLRDLDE 140

Query: 258 SSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQIL 317
                +  L+L+ N +                  ++      A+  + + H  +  N I 
Sbjct: 141 GCRSRVQYLDLKLNEI-----------------DTVNFAELAASSDT-LEHLNLQYNFIY 182

Query: 318 GIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTK 377
            +   G      L  L + SN+L   +         +  +SL  N L   I  +L     
Sbjct: 183 DVK--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238

Query: 378 LANLELSSNSLQ-GNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNL 436
           L + +L  N    G +       Q +       +       ++  ++ TL  Y       
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

Query: 437 LNGSLLLQVGNLKNL 451
           L      ++  L + 
Sbjct: 299 LPAPFADRLIALGHH 313

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (251), Expect = 8e-24
 Identities = 48/330 (14%), Positives = 107/330 (32%), Gaps = 66/330 (20%)

Query: 60  NLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVAN 119
           N +  +   ++D+     +     + + +++L+LS                         
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLS------------------------G 43

Query: 120 NKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLG 179
           N L      ++    KL+ L L  N L  +  D   +LS L+ + +  N +       L 
Sbjct: 44  NPLSQISAADLAPFTKLELLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYV-----QELL 96

Query: 180 LLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNL 239
           +  ++  L+   N           +           K + +A N             S +
Sbjct: 97  VGPSIETLHAANNNI-------SRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 240 ELLELAGNQFEG-KVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHS 298
           + L+L  N+ +    +   +S   L  LNL+ N +      D+          +L L   
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-----YDVKGQVVFAKLKTLDL--- 198

Query: 299 IANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILS 358
                          N++   +    ++   +  + +++N+L   I   +   +NL+   
Sbjct: 199 -------------SSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243

Query: 359 LFGNFLH-GSIPSSLGNLTKLANLELSSNS 387
           L GN  H G++        ++  +   +  
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.1 bits (245), Expect = 5e-23
 Identities = 54/349 (15%), Positives = 122/349 (34%), Gaps = 44/349 (12%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS 97
            R     +++  +   L+    +   ++ ++LS N        ++    +LE L LS+N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 98  FSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNL 157
                  +L   S L  L + NN ++     E+     ++TL    NN++ ++       
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SRG 119

Query: 158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK 217
              + IY+  N +        G    + YL++  N+   V+        ++  +   L+ 
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN------FAELAASSDTLEH 173

Query: 218 LCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGT 277
           L +  N     +   +   + L+ L+L+ N+    +  +F S   +  ++L  N L    
Sbjct: 174 LNLQYNFIY-DVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV--- 227

Query: 278 ANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI-LGIIHFGIRNLVNLIALGMQ 336
                            +  ++    + + HF + GN    G +         +  +  Q
Sbjct: 228 ----------------LIEKALRFSQN-LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 337 SNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLG-NLTKLANLELS 384
           + +    +     E   +  L  +G +    +P+     L  L +    
Sbjct: 271 TVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 35/240 (14%), Positives = 85/240 (35%), Gaps = 18/240 (7%)

Query: 228 SIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFL 287
           +I +   N +  ++ ++  +  +  ++    S  N+  L+L  N L   +A DL   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 288 T----NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGT 343
                + + L     + +LS+ +    +  N +       +    ++  L   +N +   
Sbjct: 61  ELLNLSSNVLYETLDLESLST-LRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113

Query: 344 IPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG-NIPLSVGNCQNL 402
           +       +  + + L  N +        G  +++  L+L  N +   N      +   L
Sbjct: 114 VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 403 IGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS 462
              +  +  +   +    +    L   LDLS N L   +  +  +   +  + +  N+  
Sbjct: 172 EHLNLQYNFIY-DVK-GQVVFAKLK-TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 21/158 (13%)

Query: 324 IRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL 383
            +N        +  + L   +  +     N++ L L GN L     + L   TKL  L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 384 SSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLY-------------- 429
           SSN L   + L   +   L   D ++  +   L     SI TL                 
Sbjct: 66  SSNVLYETLDL--ESLSTLRTLDLNNNYVQ-ELL-VGPSIETLHAANNNISRVSCSRGQG 121

Query: 430 ---LDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV 464
              + L++N +     L  G    +  LD+  N+   V
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 19/143 (13%)

Query: 344 IPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLI 403
           I ++       +I  +  + L  ++ S   +   +  L+LS N L       +     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 404 GFDASHITLTGALP-QQLLSITTLSL---------------YLDLSHNLLNGSLLLQVGN 447
             + S   L   L  + L ++ TL L                L  ++N ++    +    
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR---VSCSR 118

Query: 448 LKNLILLDISGNQFSGVIPVTLS 470
            +    + ++ N+ + +  +   
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEG 141

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (279), Expect = 2e-26
 Identities = 79/418 (18%), Positives = 132/418 (31%), Gaps = 70/418 (16%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS 97
           +R    + S  R   V        +    +N+ ++G    +P  +     +  L + +N+
Sbjct: 16  RRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNN 72

Query: 98  FSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNL 157
            + ++P       EL  L V+ N+L   +P     LL+L   +    +L           
Sbjct: 73  LT-SLPALPP---ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP------- 120

Query: 158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK 217
           S L  ++I GN L   +P        L  L+V++NQ         SLP         L K
Sbjct: 121 SGLCKLWIFGNQLT-SLPVLPP---GLQELSVSDNQL-------ASLP----ALPSELCK 165

Query: 218 LCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGT 277
           L    N    S+P   S    L+ L ++ NQ    +    S L  L   N          
Sbjct: 166 LWAYNNQLT-SLPMLPSG---LQELSVSDNQLA-SLPTLPSELYKLWAYNNRLT------ 214

Query: 278 ANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQS 337
                            LP   + L        + GN++  +          L  L +  
Sbjct: 215 ----------------SLPALPSGL----KELIVSGNRLTSLPVL----PSELKELMVSG 250

Query: 338 NQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVG 397
           N+L  ++P +      L  LS++ N L   +P SL +L+    + L  N L      ++ 
Sbjct: 251 NRL-TSLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305

Query: 398 NCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLD 455
              +  G+    I    A          L L                          D
Sbjct: 306 EITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQED 363

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.2 bits (247), Expect = 2e-22
 Identities = 70/356 (19%), Positives = 111/356 (31%), Gaps = 97/356 (27%)

Query: 108 RCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRG 167
             +    L V  + L   +P  + +   + TL +  NNLT  LP        L+ + + G
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPA---LPPELRTLEVSG 90

Query: 168 NSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLP-NLKKLCIAENNFV 226
           N L   +P     L  L   +                    L  LP  L KL I  N   
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTH---------------LPALPSGLCKLWIFGNQL- 133

Query: 227 GSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTF 286
            S+P        L+ L ++ NQ     S+  +    L  L    N L             
Sbjct: 134 TSLPVLPPG---LQELSVSDNQLA---SLP-ALPSELCKLWAYNNQLT------------ 174

Query: 287 LTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD 346
                   LP   + L        +  NQ+  +       L  L A    +N+L  ++P 
Sbjct: 175 -------SLPMLPSGL----QELSVSDNQLASLPT-LPSELYKLWAY---NNRLT-SLPA 218

Query: 347 VIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFD 406
           +      L+ L + GN L  S+P     L     L +S N L  ++P+            
Sbjct: 219 LPS---GLKELIVSGNRL-TSLPVLPSELK---ELMVSGNRLT-SLPMLPSGLL------ 264

Query: 407 ASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS 462
                                  L +  N L   L   + +L +   +++ GN  S
Sbjct: 265 ----------------------SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  109 bits (275), Expect = 3e-26
 Identities = 82/426 (19%), Positives = 137/426 (32%), Gaps = 98/426 (23%)

Query: 54  LSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELT 113
           +     N+        + + +    P   G    +    L +               +  
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-----------LDRQAH 74

Query: 114 HLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGK 173
            L + N  L   +P+       L++L    N+LT +LP+   +L +L V      +L   
Sbjct: 75  ELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS-- 127

Query: 174 IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSL 233
                 L   L YL V+ NQ   +             N   LK + +  N+    +PD  
Sbjct: 128 -----DLPPLLEYLGVSNNQLEKLPELQ---------NSSFLKIIDVDNNSLK-KLPDLP 172

Query: 234 SNASNLELLELAGNQFEGKVSI-DFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSS 292
               +LE +    NQ E    + +  +L  L  +  + N+L                   
Sbjct: 173 ---PSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSL------------------- 207

Query: 293 LKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELK 352
            KLP    +L         G N +  +      NL  L  +   +N L  T+PD      
Sbjct: 208 KKLPDLPLSL----ESIVAGNNILEELPELQ--NLPFLTTIYADNNLLK-TLPD---LPP 257

Query: 353 NLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITL 412
           +L+ L++  N+L   +P    +LT L   E   + L    P       NL   +AS   +
Sbjct: 258 SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEI 309

Query: 413 TGALPQQLLSITTLSL----------------YLDLSHNLLNGSLLLQVGNLKNLILLDI 456
             +L     S+  L++                 L  S N L   +     NLK    L +
Sbjct: 310 R-SLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLA-EVPELPQNLKQ---LHV 364

Query: 457 SGNQFS 462
             N   
Sbjct: 365 EYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  107 bits (268), Expect = 2e-25
 Identities = 86/447 (19%), Positives = 141/447 (31%), Gaps = 82/447 (18%)

Query: 36  RHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSN 95
             ++  EL+L+N  +   L     +   L  +  S N    E+P+   +L  L     + 
Sbjct: 69  LDRQAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNL 123

Query: 96  NSFSGTIPT---------------NLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA 140
            + S   P                 L   S L  + V NN L+ ++P    S   L+ +A
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIA 179

Query: 141 LYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTL-GLLRNLVYLNVNENQFWYVSS 199
              N L  +LP+   NL  L  IY   NSL       L  L  +L  +    N    +  
Sbjct: 180 AGNNQLE-ELPEL-QNLPFLTAIYADNNSL-----KKLPDLPLSLESIVAGNNILEELPE 232

Query: 200 FSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSS 259
                      NLP L  +  A+NN + ++PD      +LE L +  N     +     S
Sbjct: 233 LQ---------NLPFLTTI-YADNNLLKTLPDLP---PSLEALNVRDNYLT-DLPELPQS 278

Query: 260 LKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPH----SIANLSSTMTHFYIGGNQ 315
           L  L V     + L               N   L        S+ +L  ++    +  N+
Sbjct: 279 LTFLDVSENIFSGL----------SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 328

Query: 316 ILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNL 375
           ++ +          L  L    N L   +P+     +NL+ L +  N L    P    ++
Sbjct: 329 LIELPA----LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDIPESV 379

Query: 376 TKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHN 435
                  L  NS    +P    N + L         L    P    S+      L ++  
Sbjct: 380 ED-----LRMNSHLAEVPELPQNLKQL---HVETNPLR-EFPDIPESVE----DLRMNSE 426

Query: 436 LLNGSLLLQVGNLKNLILLDISGNQFS 462
            +             L       +   
Sbjct: 427 RVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (259), Expect = 4e-24
 Identities = 86/443 (19%), Positives = 140/443 (31%), Gaps = 85/443 (19%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSF-------------LRYINLSDNGFHGEIPQEIGN 84
           +  TE   +         P  G                    + L++ G    +P+   +
Sbjct: 34  KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPH 92

Query: 85  LYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYN 144
              LE L  S NS +  +P        L         L    P        L+ L +  N
Sbjct: 93  ---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNN 141

Query: 145 NLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSL 204
            L  +LP+   N S L++I +  NSL  K+P    L  +L ++    NQ   +       
Sbjct: 142 QLE-KLPEL-QNSSFLKIIDVDNNSL-KKLP---DLPPSLEFIAAGNNQLEELPELQ--- 192

Query: 205 PFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLA 264
                 NLP L  +    N+    +PD      +LE +    N  E     +  +L  L 
Sbjct: 193 ------NLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNILE--ELPELQNLPFLT 240

Query: 265 VLNLERNNL-----GIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGI 319
            +  + N L        +   L     + +     LP    +L    T   +  N   G+
Sbjct: 241 TIYADNNLLKTLPDLPPSLEAL----NVRDNYLTDLPELPQSL----TFLDVSENIFSGL 292

Query: 320 IHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLA 379
                    NL  L   SN++      +     +L+ L++  N L   +P+    L +  
Sbjct: 293 SEL----PPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-ELPALPPRLER-- 341

Query: 380 NLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNG 439
            L  S N L   +P    N + L      +  L    P    S+  L          +N 
Sbjct: 342 -LIASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLR---------MNS 386

Query: 440 SLLLQVGNLKNLILLDISGNQFS 462
            L       +NL  L +  N   
Sbjct: 387 HLAEVPELPQNLKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 67/384 (17%), Positives = 118/384 (30%), Gaps = 82/384 (21%)

Query: 103 PTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQV 162
           P N+S    L      ++ L  ++P E  ++         ++      P   G    + V
Sbjct: 5   PRNVSNTF-LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 163 IYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAE 222
             +R             L R    L +N      +               P+L+ L  + 
Sbjct: 63  SRLRDC-----------LDRQAHELELNNLGLSSLPE-----------LPPHLESLVASC 100

Query: 223 NNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLG 282
           N+    +P+   +  +L +                     L  L +  N L       L 
Sbjct: 101 NSLT-ELPELPQSLKSLLVDNNNLKALS-------DLPPLLEYLGVSNNQL-----EKLP 147

Query: 283 FVTFLTNCSSL--------KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALG 334
            +   +    +        KLP    +L         G NQ+  +      NL  L A+ 
Sbjct: 148 ELQNSSFLKIIDVDNNSLKKLPDLPPSL----EFIAAGNNQLEELPELQ--NLPFLTAIY 201

Query: 335 MQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPL 394
             +N L   +PD      +L+ +    N L       L NL  L  +   +N L+  +P 
Sbjct: 202 ADNNSLK-KLPD---LPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPD 254

Query: 395 SVGNCQNLIGFDASHITLTGALPQQLLSITTLSL----------------YLDLSHNLLN 438
              + + L   +     LT  LP+   S+T L +                YL+ S N + 
Sbjct: 255 LPPSLEAL---NVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 310

Query: 439 GSLLLQVGNLKNLILLDISGNQFS 462
                      +L  L++S N+  
Sbjct: 311 SLC----DLPPSLEELNVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 18/141 (12%)

Query: 326 NLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSS 385
           +   L      S+ L   +P     +K+        +    + P   G   ++A   L  
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 386 NSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV 445
              +    L + N             L+ +LP+    + +    L  S N L   L    
Sbjct: 68  CLDRQAHELELNNLG-----------LS-SLPELPPHLES----LVASCNSLT-ELPELP 110

Query: 446 GNLKNLILLDISGNQFSGVIP 466
            +LK+L++ + +    S + P
Sbjct: 111 QSLKSLLVDNNNLKALSDLPP 131

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (267), Expect = 6e-25
 Identities = 63/371 (16%), Positives = 116/371 (31%), Gaps = 21/371 (5%)

Query: 92  ELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLP 151
                     I +NL        + +     +     E  +L   + +    + +     
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68

Query: 152 DFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVN 211
             + +   ++++ +    +             +  L +  N           LP  +  N
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-------RYLPPHVFQN 121

Query: 212 LPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERN 271
           +P L  L +  N+          N   L  L ++ N  E      F +  +L  L L  N
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 272 NLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLI 331
            L     + +  +    N S   L  ++A   + +       N I  ++   +   V L 
Sbjct: 182 RLTHVDLSLIPSLFHA-NVSYNLL-STLAIPIA-VEELDASHNSI-NVVRGPV--NVELT 235

Query: 332 ALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGN 391
            L +Q N L  T    +     L  + L  N L   +      + +L  L +S+N L   
Sbjct: 236 ILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-A 292

Query: 392 IPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNL 451
           + L       L   D SH  L   + +       L   L L HN +     L++     L
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE-NLYLDHNSIVT---LKLSTHHTL 347

Query: 452 ILLDISGNQFS 462
             L +S N + 
Sbjct: 348 KNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (264), Expect = 2e-24
 Identities = 54/350 (15%), Positives = 119/350 (34%), Gaps = 45/350 (12%)

Query: 42  ELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNNSFSG 100
           ++ +  Q            L+  + +   ++    ++P  +  +  ++E L L++     
Sbjct: 31  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEE 89

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQLPDFVGNLSA 159
                 +    +  L +  N +   +P  +  ++  L  L L  N+L+        N   
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148

Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
           L  + +  N+L      T     +L  L ++ N+          +       +P+L    
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-------THVDLS---LIPSLFHAN 198

Query: 220 IAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTAN 279
           ++ N        +L+    +E L+ + N       +       L +L L+ NNL      
Sbjct: 199 VSYNLL-----STLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNL-----T 245

Query: 280 DLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQ 339
           D  ++        + L                  N++  I++     +  L  L + +N+
Sbjct: 246 DTAWLLNYPGLVEVDL----------------SYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 340 LHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ 389
           L   +      +  L++L L  N L   +  +     +L NL L  NS+ 
Sbjct: 290 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 88.8 bits (220), Expect = 6e-19
 Identities = 65/365 (17%), Positives = 123/365 (33%), Gaps = 48/365 (13%)

Query: 35  HRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELS 94
              ++V  L+L++ +I  + +        ++ + +  N      P    N+  L  L L 
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131

Query: 95  NNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQLPDF 153
            N  S           +LT L ++NN LE +I  +   +   LQ L L  N LT  +   
Sbjct: 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL- 188

Query: 154 VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLP 213
              + +L    +  N L     +TL +   +  L+ + N           +   + V L 
Sbjct: 189 -SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSI-------NVVRGPVNVELT 235

Query: 214 NLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNL 273
            LK   +  NN   +    L N   L  ++L+ N+ E  +   F  ++ L  L +  N L
Sbjct: 236 ILK---LQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 274 GIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIAL 333
                                L      + + +    +  N +L  +         L  L
Sbjct: 291 V-------------------ALNLYGQPIPT-LKVLDLSHNHLL-HVERNQPQFDRLENL 329

Query: 334 GMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIP 393
            +  N +  T+   +     L+ L+L  N    +   +L     +A   +        I 
Sbjct: 330 YLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKID 384

Query: 394 LSVGN 398
             + +
Sbjct: 385 YQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 41/240 (17%), Positives = 80/240 (33%), Gaps = 14/240 (5%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNN 96
             +T L L +  +      ++ N   L  ++LS N    +I       + RLE+L +SNN
Sbjct: 232 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 288

Query: 97  SFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGN 156
                +         L  L +++N L   + +      +L+ L L +N++   L   +  
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LST 343

Query: 157 LSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW---YVSSFSGSLPFDILVNLP 213
              L+ + +  N       +   L RN+    V++             G    +      
Sbjct: 344 HHTLKNLTLSHNDW--DCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYL 401

Query: 214 NLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNL 273
           +     IA  + V  +  +    S  + +    +            L+    L  E N L
Sbjct: 402 DRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNEL 461

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 26/179 (14%), Positives = 56/179 (31%), Gaps = 1/179 (0%)

Query: 286 FLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP 345
                   K   S           +I          F    L N   +  +++ +     
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68

Query: 346 DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGF 405
            ++   + +++L+L    +      +      +  L +  N+++   P    N   L   
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 406 DASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV 464
                 L+ +LP+ +   T     L +S+N L            +L  L +S N+ + V
Sbjct: 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.7 bits (246), Expect = 2e-22
 Identities = 63/336 (18%), Positives = 126/336 (37%), Gaps = 17/336 (5%)

Query: 64  LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNL-SRCSELTHLRVANNKL 122
           + Y++LS N            L  L+ L++   +    I  N     S L  L++  N+ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 123 EGQIPKEI-GSLLKLQTLALYYNNLTG-QLPDFV-GNLSALQVIYIRGNSLGGKIPTTL- 178
             Q+       L  L+ L L   NL G  L       L++L+++ +R N++    P +  
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 179 GLLRNLVYLNVNENQFWYVSS---FSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSN 235
             +R    L++  N+   +      +       L+ L ++    + E         +   
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 236 ASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTF--LTNCSSL 293
            +++  L+L+GN F+  ++  F        +     +      +  G   F    N +  
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 294 KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKN 353
            L       +S +    +  ++I  ++     +  +L  L +  N+++    +    L +
Sbjct: 271 GLE------ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324

Query: 354 LQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ 389
           L  L+L  NFL         NL KL  L+LS N ++
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.4 bits (235), Expect = 5e-21
 Identities = 66/383 (17%), Positives = 122/383 (31%), Gaps = 39/383 (10%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNNSF 98
           V  +DLS   I  +       L  L+++ +        I       L  L  L+L  N F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 99  SGTIPTN-LSRCSELTHLRVANNKL-EGQIPKEI-GSLLKLQTLALYYNNLTGQLPDFV- 154
              + T   +  + L  L +    L    +       L  L+ L L  NN+    P    
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 155 GNLSALQVIYIRGNSLGGKIPTTLGLL--RNLVYLNVNENQFWYVSSFS-GSLPFDILVN 211
            N+    V+ +  N +       L     ++   L ++      ++ +  G         
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 212 LPNLKKLCIAENNFVGSIPDSLSNASNLELLE-------------LAGNQFEGKVSIDFS 258
             ++  L ++ N F  S+     +A     ++                  F+   +  F 
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 259 SLK--NLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKL---------PHSIANLSSTMT 307
            L+   +   +L ++ +    A      +  T+   L L          ++   L+  + 
Sbjct: 271 GLEASGVKTCDLSKSKI---FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH-LL 326

Query: 308 HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS 367
              +  N +  I      NL  L  L +  N +          L NL+ L+L  N L  S
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-S 385

Query: 368 IPSS-LGNLTKLANLELSSNSLQ 389
           +P      LT L  + L +N   
Sbjct: 386 VPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.4 bits (170), Expect = 6e-13
 Identities = 59/335 (17%), Positives = 109/335 (32%), Gaps = 62/335 (18%)

Query: 136 LQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPT-TLGLLRNLVYLNVNENQF 194
           +  + L  N++          L  LQ + +   + G  I   T   L +L+ L ++ NQF
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 195 WYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI--PDSLSNASNLELLELAGNQFEGK 252
                    L       L NL+ L + + N  G++   +     ++LE+L L  N  +  
Sbjct: 92  -------LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-- 142

Query: 253 VSID----FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTH 308
             I     F +++   VL+L  N +      DL                           
Sbjct: 143 -KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN------------------------- 176

Query: 309 FYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSI 368
                       HF +  L ++    M    L         +  ++  L L GN    S+
Sbjct: 177 --------FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 369 PSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSL 428
                +   +A  ++ S  L  +  +           D  + T  G     +        
Sbjct: 229 AKRFFDA--IAGTKIQSLILSNSYNMGSSFGHTNFK-DPDNFTFKGLEASGVK------- 278

Query: 429 YLDLSHNLLNGSLLLQV-GNLKNLILLDISGNQFS 462
             DLS + +  +LL  V  +  +L  L ++ N+ +
Sbjct: 279 TCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN 312

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 24/175 (13%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP-DV 347
            C +  L H +  L + + +  +  N I  +       L +L  L ++       I  + 
Sbjct: 16  ICINRGL-HQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74

Query: 348 IGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDA 407
              L +L IL L  N        +   L  L  L L+  +L G                 
Sbjct: 75  FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG----------------- 117

Query: 408 SHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS 462
               L+G   + L S+  L L  +    +   S  L   N++   +LD++ N+  
Sbjct: 118 --AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL---NMRRFHVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 43/274 (15%), Positives = 87/274 (31%), Gaps = 36/274 (13%)

Query: 213 PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSLKNLAVLNLERN 271
            ++  + ++ N+       S S   +L+ L++        +  + F  L +L +L L+ N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 272 NLGIGTANDLGFVTFLTNCSSLKLPHSI-ANLSSTMTHFYIGGNQI-LGIIHFGI-RNLV 328
                                L+L       L++ +    +    +   ++     + L 
Sbjct: 90  QF-------------------LQLETGAFNGLAN-LEVLTLTQCNLDGAVLSGNFFKPLT 129

Query: 329 NLIALGMQSNQLHGTIPD-VIGELKNLQILSLFGNFLHGSIPSSLGNLTK--LANLELSS 385
           +L  L ++ N +    P      ++   +L L  N +       L N        L LSS
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189

Query: 386 NSLQGNIPLSVG--------NCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLL 437
            +LQ      +G           ++   D S      ++ ++       +    L  +  
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 438 -NGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470
            N        N K+       G + SGV    LS
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.1 bits (237), Expect = 8e-22
 Identities = 67/332 (20%), Positives = 125/332 (37%), Gaps = 42/332 (12%)

Query: 63  FLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKL 122
            LR +  SD G   ++P+++        L+L NN  +     +      L  L + NNK+
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 123 EGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLR 182
               P     L+KL+ L L  N L  +LP+ +     LQ + +  N +     +    L 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 183 NLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELL 242
            ++ + +  N        S  +       +  L  + IA+ N   +IP  L    +L  L
Sbjct: 146 QMIVVELGTNPL-----KSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTEL 197

Query: 243 ELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANL 302
            L GN+     +     L NLA L L  N++                 S++    S+AN 
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSI-----------------SAVD-NGSLANT 239

Query: 303 SSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHG------TIPDVIGELKNLQI 356
              +   ++  N+ L  +  G+ +   +  + + +N +          P    +  +   
Sbjct: 240 PH-LRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 357 LSLFGNFLHGSI--PSSLGNLTKLANLELSSN 386
           +SLF N +      PS+   +   A ++L + 
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.4 bits (230), Expect = 7e-21
 Identities = 68/304 (22%), Positives = 116/304 (38%), Gaps = 33/304 (10%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
              LDL N +I  +      NL  L  + L +N      P     L +LE+L LS N   
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLT-GQLPDFV-GN 156
             +P  + +   L  LRV  N++  ++ K +   L ++  + L  N L    + +     
Sbjct: 114 -ELPEKMPK--TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 157 LSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLK 216
           +  L  I I   ++   IP   GL  +L  L+++ N+          +    L  L NL 
Sbjct: 170 MKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKI-------TKVDAASLKGLNNLA 219

Query: 217 KLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG 276
           KL ++ N+       SL+N  +L  L L  N+   KV    +  K + V+ L  NN+   
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278

Query: 277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI-LGIIHFGI-RNLVNLIALG 334
            +ND     + T  +S              +   +  N +    I     R +    A+ 
Sbjct: 279 GSNDFCPPGYNTKKASY-------------SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325

Query: 335 MQSN 338
           + + 
Sbjct: 326 LGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 57/364 (15%), Positives = 113/364 (31%), Gaps = 72/364 (19%)

Query: 107 SRCS-ELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYI 165
            RC   L  ++ ++  LE ++PK++        L L  N +T        NL  L  + +
Sbjct: 27  FRCQCHLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLIL 83

Query: 166 RGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNF 225
             N +    P     L  L  L +++NQ          LP  +      L++L + EN  
Sbjct: 84  INNKISKISPGAFAPLVKLERLYLSKNQL-------KELPEKMP---KTLQELRVHENEI 133

Query: 226 VGSIPDSLSNASNLELLELAGNQFEGKVSID---FSSLKNLAVLNLERNNLGIGTANDLG 282
                   +  + + ++EL  N  +    I+   F  +K L+ + +   N+         
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLK-SSGIENGAFQGMKKLSYIRIADTNIT-------- 184

Query: 283 FVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHG 342
                       +P  +                             +L  L +  N++  
Sbjct: 185 -----------TIPQGL---------------------------PPSLTELHLDGNKITK 206

Query: 343 TIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
                +  L NL  L L  N +      SL N   L  L L++N L   +P  + + + +
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265

Query: 403 IGFDASHITLT----GALPQQLLSITTLSL-YLDLSHNLLNGSLLLQV--GNLKNLILLD 455
                 +  ++            +    S   + L  N +    +       +     + 
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325

Query: 456 ISGN 459
           +   
Sbjct: 326 LGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 61/307 (19%), Positives = 105/307 (34%), Gaps = 63/307 (20%)

Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
           L+V+      L  K+P    L  +   L++  N+          +      NL NL  L 
Sbjct: 33  LRVVQCSDLGLE-KVPK--DLPPDTALLDLQNNKIT-------EIKDGDFKNLKNLHTLI 82

Query: 220 IAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTAN 279
           +  N      P + +    LE L L+ NQ +    +     K L  L +  N +      
Sbjct: 83  LINNKISKISPGAFAPLVKLERLYLSKNQLK---ELPEKMPKTLQELRVHENEI------ 133

Query: 280 DLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI--LGIIHFGIRNLVNLIALGMQS 337
                      + ++       L+  M    +G N +   GI +   + +  L  + +  
Sbjct: 134 -----------TKVR-KSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

Query: 338 NQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVG 397
             +  TIP   G   +L  L L GN +     +SL  L  LA L LS NS+      S+ 
Sbjct: 181 TNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 398 NCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDIS 457
           N  +L                           L L++N L   +   + + K + ++ + 
Sbjct: 238 NTPHL-------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLH 271

Query: 458 GNQFSGV 464
            N  S +
Sbjct: 272 NNNISAI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 30/163 (18%), Positives = 63/163 (38%), Gaps = 14/163 (8%)

Query: 39  RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNNS 97
           +++ + +++  I  +     G    L  ++L  N    ++       L  L KL LS NS
Sbjct: 172 KLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNS 227

Query: 98  FSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG------QLP 151
            S     +L+    L  L + NNKL  ++P  +     +Q + L+ NN++         P
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 152 DFVGNLSALQVIYIRGNSLGGKI--PTTLGLLRNLVYLNVNEN 192
            +    ++   + +  N +      P+T   +     + +   
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.0 bits (239), Expect = 1e-21
 Identities = 51/305 (16%), Positives = 88/305 (28%), Gaps = 58/305 (19%)

Query: 87  RLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNL 146
           +  K+  +    S  +P  +   S   +L +  N ++         L  L+ L L  N++
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 147 TGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF 206
                     L++L  + +  N L          L  L  L +  N          S+P 
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-------ESIPS 164

Query: 207 DILVNLPNLKKLCIAENNFVGSIP-DSLSNASNLELLELAGNQFEGKVSI-DFSSLKNLA 264
                +P+L +L + E   +  I   +     NL+ L L          + + + L  L 
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI---KDMPNLTPLVGLE 221

Query: 265 VLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGI 324
            L +                                            GN    I     
Sbjct: 222 ELEM-------------------------------------------SGNHFPEIRPGSF 238

Query: 325 RNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS 384
             L +L  L + ++Q+     +    L +L  L+L  N L          L  L  L L 
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298

Query: 385 SNSLQ 389
            N   
Sbjct: 299 HNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 7e-18
 Identities = 54/240 (22%), Positives = 88/240 (36%), Gaps = 18/240 (7%)

Query: 39  RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNNS 97
               L+L    I  + +    +L  L  + L  N    +I       L  L  LEL +N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 98  FSGTIPTN-LSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQLPD--F 153
            +  IP+      S+L  L + NN +E  IP      +  L  L L        + +  F
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 154 VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLP 213
            G L  L+ + +   ++   +P  L  L  L  L ++ N F  +              L 
Sbjct: 193 EG-LFNLKYLNLGMCNI-KDMP-NLTPLVGLEELEMSGNHFPEIRP-------GSFHGLS 242

Query: 214 NLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNL 273
           +LKKL +  +       ++    ++L  L LA N         F+ L+ L  L+L  N  
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 7e-11
 Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 6/184 (3%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
            C+   L      + S   +  +  N I  I     R+L +L  L +  N +        
Sbjct: 60  VCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119

Query: 349 GELKNLQILSLFGNFLHGSIPS-SLGNLTKLANLELSSNSLQGNIPLSV-GNCQNLIGFD 406
             L +L  L LF N+L   IPS +   L+KL  L L +N ++ +IP        +L+  D
Sbjct: 120 NGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLD 177

Query: 407 ASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIP 466
              +     + +          YL+L    +    +  +  L  L  L++SGN F  + P
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRP 235

Query: 467 VTLS 470
            +  
Sbjct: 236 GSFH 239

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 41/239 (17%), Positives = 85/239 (35%), Gaps = 31/239 (12%)

Query: 228 SIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFL 287
            +P  +   SN   L L  N  +   +  F  L +L VL L RN++              
Sbjct: 68  EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-------------- 111

Query: 288 TNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDV 347
                ++   +   L+S +    +  N +  I       L  L  L +++N +       
Sbjct: 112 ---RQIE-VGAFNGLAS-LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA 166

Query: 348 IGELKNLQILSLFGNFLHGSIPS-SLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFD 406
              + +L  L L        I   +   L  L  L L   +++ ++P ++     L   +
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELE 224

Query: 407 ASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVG---NLKNLILLDISGNQFS 462
            S        P     +++L   L + ++ ++    ++      L +L+ L+++ N  S
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLK-KLWVMNSQVSL---IERNAFDGLASLVELNLAHNNLS 279

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.1 bits (237), Expect = 3e-21
 Identities = 78/433 (18%), Positives = 144/433 (33%), Gaps = 49/433 (11%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS 97
             +T LD  N  I  +    +  L+ L  +  + N        ++     L  L   +N 
Sbjct: 42  ATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNK 96

Query: 98  FSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNL 157
            +     +++  ++LT+L    NKL      ++     L  L    N LT ++   V + 
Sbjct: 97  LTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHN 147

Query: 158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK 217
           + L  +    N    K+   +     L  L+ + N+          L          L +
Sbjct: 148 TQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI-------TELDVS---QNKLLNR 195

Query: 218 LCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGT 277
           L    NN    +   L+    L  L+ + N+      ID + L  L   +   N L    
Sbjct: 196 LNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDCSVNPLTELD 249

Query: 278 ANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQS 337
            + L  +T L +C    L       ++ + +F   G + +  +     +   L  L  Q+
Sbjct: 250 VSTLSKLTTL-HCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT--HNTQLYLLDCQA 306

Query: 338 NQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVG 397
             +   +   + +   L  L L    L   +   + + TKL +L   +  +Q +   SVG
Sbjct: 307 AGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVG 358

Query: 398 NCQNLIGFDASHITLT----GALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLIL 453
               L     +           L    L+I      LD   N +N  +    G + +   
Sbjct: 359 KIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN--IEPGDGGVYDQAT 416

Query: 454 LDISGNQFSGVIP 466
             I+    S   P
Sbjct: 417 NTITWENLSTDNP 429

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.4 bits (222), Expect = 2e-19
 Identities = 76/410 (18%), Positives = 135/410 (32%), Gaps = 50/410 (12%)

Query: 64  LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLE 123
                 +              L  L  L+  N+S +    T + + + LT L   +N + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT 77

Query: 124 GQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRN 183
                ++     L  LA   N LT  L   V  L+ L  +    N L       +     
Sbjct: 78  TL---DLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL---TKLDVSQNPL 128

Query: 184 LVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLE 243
           L YLN   N    +           + +   L +L    N  +  +   ++  + L  L+
Sbjct: 129 LTYLNCARNTLTEID----------VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLD 176

Query: 244 LAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPH-SIANL 302
            + N+      +D S  K L  LN + NN+     N    +TFL +CSS KL    +  L
Sbjct: 177 CSFNKIT---ELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFL-DCSSNKLTEIDVTPL 232

Query: 303 SSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN 362
           +  +T+F    N +  +    +  L  L  L      L   I   +     L      G 
Sbjct: 233 TQ-LTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGC 285

Query: 363 FLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLS 422
                +   + + T+L  L+  +  +     L +     L+    ++  LT       L 
Sbjct: 286 RKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTE------LD 334

Query: 423 ITTLSL--YLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470
           ++  +    L   +  +       VG +  L     +  Q   +   TL+
Sbjct: 335 VSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTITMPKETLT 382

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 51/258 (19%), Positives = 81/258 (31%), Gaps = 21/258 (8%)

Query: 213 PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNN 272
            N      A      +   S    + L  L+   +            L  L  L    NN
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN 75

Query: 273 LGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIA 332
           +     +    +T+L  C S KL +      + +T+     N++       +     L  
Sbjct: 76  ITTLDLSQNTNLTYL-ACDSNKLTNLDVTPLTKLTYLNCDTNKL---TKLDVSQNPLLTY 131

Query: 333 LGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNI 392
           L    N L   I   +     L  L    N     +   +   T+L  L+ S N +    
Sbjct: 132 LNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-- 184

Query: 393 PLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLI 452
            L V   + L   +     +T     Q + +T    +LD S N L     + V  L  L 
Sbjct: 185 -LDVSQNKLLNRLNCDTNNITKLDLNQNIQLT----FLDCSSNKLTE---IDVTPLTQLT 236

Query: 453 LLDISGNQFSGVIPVTLS 470
             D S N  + +   TLS
Sbjct: 237 YFDCSVNPLTELDVSTLS 254

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.5 bits (230), Expect = 2e-20
 Identities = 52/305 (17%), Positives = 92/305 (30%), Gaps = 58/305 (19%)

Query: 87  RLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNL 146
           +  K+     +    +P  +S  +    L +  N+++         L  L+ L L  N++
Sbjct: 44  QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 147 TGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF 206
                     L+ L  + +  N L          L  L  L +  N          S+P 
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-------ESIPS 153

Query: 207 DILVNLPNLKKLCIAENNFVGSIP-DSLSNASNLELLELAGNQFEGKVSI-DFSSLKNLA 264
                +P+L++L + E   +  I   +    SNL  L LA         I + + L  L 
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLD 210

Query: 265 VLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGI 324
            L+L  N+L                                                   
Sbjct: 211 ELDLSGNHLSAIRPGSF------------------------------------------- 227

Query: 325 RNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS 384
           + L++L  L M  +Q+     +    L++L  ++L  N L          L  L  + L 
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

Query: 385 SNSLQ 389
            N   
Sbjct: 288 HNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.2 bits (211), Expect = 5e-18
 Identities = 57/256 (22%), Positives = 96/256 (37%), Gaps = 25/256 (9%)

Query: 31  VTCGHRH---------QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQE 81
           V C  ++              L+L   +I  +      +L  L  + LS N         
Sbjct: 48  VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107

Query: 82  IGNLYRLEKLELSNNSFSGTIPTN-LSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTL 139
              L  L  LEL +N  + TIP       S+L  L + NN +E  IP      +  L+ L
Sbjct: 108 FNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRL 165

Query: 140 ALYYNNLTGQLPD--FVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV 197
            L        + +  F G LS L+ + +   +L  +IP  L  L  L  L+++ N     
Sbjct: 166 DLGELKRLSYISEGAFEG-LSNLRYLNLAMCNL-REIP-NLTPLIKLDELDLSGNHLS-- 220

Query: 198 SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDF 257
                ++       L +L+KL + ++       ++  N  +L  + LA N         F
Sbjct: 221 -----AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275

Query: 258 SSLKNLAVLNLERNNL 273
           + L +L  ++L  N  
Sbjct: 276 TPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 4/177 (2%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
            C    L      +S+      +  NQI  I     ++L +L  L +  N +        
Sbjct: 49  ICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF 108

Query: 349 GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSV-GNCQNLIGFDA 407
             L NL  L LF N L      +   L+KL  L L +N ++ +IP        +L   D 
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDL 167

Query: 408 SHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV 464
             +     + +      +   YL+L+   L    +  +  L  L  LD+SGN  S +
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAI 222

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.7 bits (230), Expect = 3e-20
 Identities = 61/353 (17%), Positives = 104/353 (29%), Gaps = 63/353 (17%)

Query: 78  IPQEIGNLYRLEKLELSNNSFSGTIPTNLSRC-SELTHLRVANNKLEG--QIPKEIGSLL 134
           I   I N + L +    N         +      +     +          + KE   + 
Sbjct: 3   IMLPINNNFSLSQNSFYNTISG--TYADYFSAWDKWEKQALPGENRNEAVSLLKEC-LIN 59

Query: 135 KLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF 194
           +   L L   NL+  LPD +     + V+ I  N+L   +P       +L YL+  +N+ 
Sbjct: 60  QFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPA---SLEYLDACDNRL 112

Query: 195 WYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVS 254
                   +LP        +LK L +  N     +P+  +    LE +    NQ      
Sbjct: 113 -------STLP----ELPASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT---M 154

Query: 255 IDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGN 314
           +      +L VL++  N L                     LP    +L        +  N
Sbjct: 155 LP-ELPTSLEVLSVRNNQLT-------------------FLPELPESL----EALDVSTN 190

Query: 315 QILGIIHFGIRNLVNL----IALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPS 370
             L  +        +     I    + N++   IP+ I  L     + L  N L   I  
Sbjct: 191 L-LESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 371 SLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSI 423
           SL   T   +          ++     N  +    DA            +  I
Sbjct: 249 SLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 91.2 bits (226), Expect = 7e-20
 Identities = 52/273 (19%), Positives = 97/273 (35%), Gaps = 32/273 (11%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS 97
            + +EL L+   +   L   +     +  + ++ N     +P+   +L   E L+  +N 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPASL---EYLDACDNR 111

Query: 98  FSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNL 157
            S T+P   +    L HL V NN+L   +P+    L   + +    N LT  LP+   +L
Sbjct: 112 LS-TLPELPAS---LKHLDVDNNQLT-MLPELPALL---EYINADNNQLT-MLPELPTSL 162

Query: 158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDI--LVNLPNL 215
             L    +R N L   +P    L  +L  L+V+ N          SLP       +    
Sbjct: 163 EVL---SVRNNQLT-FLP---ELPESLEALDVSTNLL-------ESLPAVPVRNHHSEET 208

Query: 216 KKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGI 275
           +       N +  IP+++ +      + L  N    ++    S        +  R    +
Sbjct: 209 EIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 276 GTANDLGFVTFLTNCSSLKLPHSIANLSSTMTH 308
                      L +  +   P +  +  S + H
Sbjct: 269 SDGQQNTLHRPLADAVTAWFPENKQSDVSQIWH 301

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.6 bits (196), Expect = 5e-16
 Identities = 56/347 (16%), Positives = 111/347 (31%), Gaps = 100/347 (28%)

Query: 126 IPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTL--GLLRN 183
           I   I +   L     +YN ++G   D+       +   + G +   +  + L   L+  
Sbjct: 3   IMLPINNNFSLSQN-SFYNTISGTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQ 60

Query: 184 LVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLE 243
              L +N            SLP ++    P +  L I +N  + S+P+  ++   LE L+
Sbjct: 61  FSELQLNRLNL-------SSLPDNLP---PQITVLEITQNALI-SLPELPAS---LEYLD 106

Query: 244 LAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLS 303
              N+     ++      +L  L+++ N L                     LP   A L 
Sbjct: 107 ACDNRLS---TLP-ELPASLKHLDVDNNQLT-------------------MLPELPALLE 143

Query: 304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNF 363
                                        +   +NQL   +P+      +L++LS+  N 
Sbjct: 144 Y----------------------------INADNNQLT-MLPE---LPTSLEVLSVRNNQ 171

Query: 364 LHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSI 423
           L   +P    +L  L   ++S+N L+ ++P       +                      
Sbjct: 172 L-TFLPELPESLEAL---DVSTNLLE-SLPAVPVRNHHS--------------------- 205

Query: 424 TTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470
               ++     N +   +   + +L     + +  N  S  I  +LS
Sbjct: 206 EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 89.8 bits (223), Expect = 6e-20
 Identities = 58/277 (20%), Positives = 100/277 (36%), Gaps = 21/277 (7%)

Query: 88  LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNL 146
           ++ L+LSNN  +    ++L RC  L  L + +N +   I ++   SL  L+ L L YN L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL 112

Query: 147 TGQLPDFVGNLSALQVIYIRGNSLGGKIPTTL-GLLRNLVYLNVNENQFWYVSSFSGSLP 205
           +     +   LS+L  + + GN       T+L   L  L  L V              + 
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT------FTKIQ 166

Query: 206 FDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAV 265
                 L  L++L I  ++     P SL +  N+  L L   Q    + I      ++  
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 266 LNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIR 325
           L L   +L     ++L      +                   +  I    +  ++   + 
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTF-----------RNVKITDESLFQVMKL-LN 274

Query: 326 NLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN 362
            +  L+ L    NQL      +   L +LQ + L  N
Sbjct: 275 QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 51/298 (17%), Positives = 107/298 (35%), Gaps = 22/298 (7%)

Query: 93  LSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD 152
            S+ S + +IP+ L+    +  L ++NN++      ++   + LQ L L  N +     D
Sbjct: 38  GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 153 FVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNL 212
              +L +L+ + +  N L     +    L +L +LN+  N +  +          +  +L
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG------ETSLFSHL 148

Query: 213 PNLKKLCIAENNFVGSIPD-SLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERN 271
             L+ L +   +    I     +  + LE LE+  +  +        S++N++ L L   
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208

Query: 272 NLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLI 331
                      FV   ++   L+L     +      HF    +++       +       
Sbjct: 209 QH---ILLLEIFVDVTSSVECLEL----RDTDLDTFHF----SELSTGETNSLIKKFTFR 257

Query: 332 ALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ 389
            + +    L   +  ++ ++  L  L    N L          LT L  + L +N   
Sbjct: 258 NVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 43/244 (17%), Positives = 89/244 (36%), Gaps = 8/244 (3%)

Query: 35  HRHQRVTELDLSNQRIGGVLSPYV-GNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLE 92
            R   +  L L++  I   +      +L  L +++LS N     +       L  L  L 
Sbjct: 73  QRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130

Query: 93  LSNNSFSGTIPTNL-SRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQL 150
           L  N +     T+L S  ++L  LRV N     +I ++    L  L+ L +  ++L    
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190

Query: 151 PDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFS-GSLPFDIL 209
           P  + ++  +  + +        +   + +  ++  L + +            +   + L
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 210 VNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLE 269
           +     + + I + +    +   L+  S L  LE + NQ +      F  L +L  + L 
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309

Query: 270 RNNL 273
            N  
Sbjct: 310 TNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.1 bits (159), Expect = 9e-12
 Identities = 50/275 (18%), Positives = 95/275 (34%), Gaps = 30/275 (10%)

Query: 179 GLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASN 238
           GL   +  L+++ N+          +    L    NL+ L +  N       DS S+  +
Sbjct: 49  GLTEAVKSLDLSNNRIT-------YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101

Query: 239 LELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKL--- 295
           LE L+L+ N      S  F  L +L  LNL  N     T  +    + LT    L++   
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP--YKTLGETSLFSHLTKLQILRVGNM 159

Query: 296 -------PHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
                      A L+  +    I  + +       ++++ N+  L +   Q    +   +
Sbjct: 160 DTFTKIQRKDFAGLTF-LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218

Query: 349 GELKNLQILSLFGNFLHG----SIPS----SLGNLTKLANLELSSNSLQGNIPLSVGNCQ 400
               +++ L L    L       + +    SL       N++++  SL   +   +    
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQIS 277

Query: 401 NLIGFDASHITLTGALPQQLLSITTLSLYLDLSHN 435
            L+  + S   L   +P  +    T    + L  N
Sbjct: 278 GLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 27/178 (15%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
             SS  L    + L+  +    +  N+I  I +  ++  VNL AL + SN ++    D  
Sbjct: 37  KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96

Query: 349 GELKNLQILSLFGNFLHGSIPSSL-GNLTKLANLELSSNSLQGNIPLSV-GNCQNLIGFD 406
             L +L+ L L  N+L  ++ SS    L+ L  L L  N  +     S+  +   L    
Sbjct: 97  SSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155

Query: 407 ASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV 464
             ++     + ++  +                         L  L  L+I  +     
Sbjct: 156 VGNMDTFTKIQRKDFA------------------------GLTFLEELEIDASDLQSY 189

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.1 bits (219), Expect = 1e-19
 Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 13/239 (5%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNG--FHGEIPQEIGNLYRLEKLELSNNS 97
            T L+L + ++  +       L+ L  ++LS NG  F G   Q       L+ L+LS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 98  FSGTIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQLPDFVGN 156
              T+ +N     +L HL   ++ L+      +  SL  L  L + + +           
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 157 LSALQVIYIRGNSLGGKI-PTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNL 215
           LS+L+V+ + GNS      P     LRNL +L++++ Q          L      +L +L
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-------QLSPTAFNSLSSL 201

Query: 216 KKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSL-KNLAVLNLERNNL 273
           + L ++ NNF           ++L++L+ + N        +      +LA LNL +N+ 
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 54/260 (20%), Positives = 98/260 (37%), Gaps = 21/260 (8%)

Query: 67  INLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQ- 125
           I  +  G    +P  I       +LEL +N           + ++LT L +++N L  + 
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 126 -IPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPT-TLGLLRN 183
              +       L+ L L +N +   +      L  L+ +  + ++L           LRN
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 184 LVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI-PDSLSNASNLELL 242
           L+YL+++                 I   L +L+ L +A N+F  +  PD  +   NL  L
Sbjct: 128 LIYLDISHTHT-------RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 243 ELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLT--NCSSLKL----P 296
           +L+  Q E      F+SL +L VLN+  NN           +  L   + S   +     
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

Query: 297 HSIANLSSTMTHFYIGGNQI 316
             + +  S++    +  N  
Sbjct: 241 QELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.2 bits (214), Expect = 6e-19
 Identities = 57/276 (20%), Positives = 111/276 (40%), Gaps = 33/276 (11%)

Query: 91  LELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQ- 149
           +  ++   + ++PT +   S  T L + +NKL+         L +L  L+L  N L+ + 
Sbjct: 12  IRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 150 LPDFV-GNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDI 208
                    ++L+ + +  N +   + +    L  L +L+   +    +S       F +
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMS------EFSV 121

Query: 209 LVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSLKNLAVLN 267
            ++L NL  L I+  +   +     +  S+LE+L++AGN F+     D F+ L+NL  L+
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 268 LERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNL 327
           L +  L                   L  P +  +LSS +    +  N    +  F  + L
Sbjct: 182 LSQCQL-----------------EQLS-PTAFNSLSS-LQVLNMSHNNFFSLDTFPYKCL 222

Query: 328 VNLIALGMQSNQLHGTIPDVIGEL-KNLQILSLFGN 362
            +L  L    N +  +    +     +L  L+L  N
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 47/255 (18%), Positives = 79/255 (30%), Gaps = 30/255 (11%)

Query: 137 QTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY 196
             +      LT  +P   G  S+   + +  N L          L  L  L+++ N   +
Sbjct: 10  TEIRCNSKGLT-SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID 256
                            +LK L ++ N  + ++  +      LE L+   +  +      
Sbjct: 67  KG-----CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 257 -FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQ 315
            F SL+NL  L++   +                             LSS +    + GN 
Sbjct: 121 VFLSLRNLIYLDISHTHT-----------------RVAF-NGIFNGLSS-LEVLKMAGNS 161

Query: 316 ILGIIHFGI-RNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGN 374
                   I   L NL  L +   QL    P     L +LQ+L++  N            
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 375 LTKLANLELSSNSLQ 389
           L  L  L+ S N + 
Sbjct: 222 LNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.3 bits (183), Expect = 7e-15
 Identities = 51/266 (19%), Positives = 93/266 (34%), Gaps = 31/266 (11%)

Query: 203 SLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ--FEGKVSIDFSSL 260
           S+P  I     +  +L +  N             + L  L L+ N   F+G  S      
Sbjct: 21  SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 261 KNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGII 320
            +L  L+L  N +                     +  +   L   + H     + +  + 
Sbjct: 78  TSLKYLDLSFNGVIT-------------------MSSNFLGLEQ-LEHLDFQHSNLKQMS 117

Query: 321 HFGI-RNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN-FLHGSIPSSLGNLTKL 378
            F +  +L NLI L +           +   L +L++L + GN F    +P     L  L
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 379 ANLELSSNSLQGNIPLSVGNC-QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLL 437
             L+LS   L+  +  +  N   +L   + SH             + +L   LD S N +
Sbjct: 178 TFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ-VLDYSLNHI 235

Query: 438 NGSLLLQVGNL-KNLILLDISGNQFS 462
             S   ++ +   +L  L+++ N F+
Sbjct: 236 MTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 6/180 (3%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLH--GTIPD 346
            C+S  L      + S+ T   +  N++  + H     L  L  L + SN L   G    
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72

Query: 347 VIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSV-GNCQNLIGF 405
                 +L+ L L  N +  ++ S+   L +L +L+   ++L+     SV  + +NLI  
Sbjct: 73  SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131

Query: 406 DASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV-GNLKNLILLDISGNQFSGV 464
           D SH          + +  +    L ++ N    + L  +   L+NL  LD+S  Q   +
Sbjct: 132 DISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.9 bits (223), Expect = 2e-19
 Identities = 83/468 (17%), Positives = 169/468 (36%), Gaps = 56/468 (11%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
            T L++S   I  + +  + +LS LR + +S N               LE L+LS+N   
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 100 GTIPTNLSRCSELTHLRVANNKLEG-QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS 158
                       L HL ++ N  +   I KE G++ +L+ L L   +L       + +L+
Sbjct: 83  KISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 159 ALQVIYIRGNSLGGKIP-------------------------------TTLGLLRNLVYL 187
             +V+ + G + G K                                 T   L  + +  
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 188 NVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGN 247
            + +N+  Y  S    L  +  ++   L  +    N+F+  +   L   + +    ++  
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL--QLVWHTTVWYFSISNV 257

Query: 248 QFEG-----KVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLT----NCSSLKLPHS 298
           + +G           +SLK L++  +  +  G   +      + +       S  ++ H 
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317

Query: 299 IA-NLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIG---ELKNL 354
           +  +  S   H     N +   +     +L  L  L +Q NQL   +  +     ++K+L
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSL 376

Query: 355 QILSLFGNFLHGSIPSSL-GNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLT 413
           Q L +  N +              L +L +SSN L   I   +     ++   ++ I   
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-- 434

Query: 414 GALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQF 461
            ++P+Q++ +  L   L+++ N L          L +L  + +  N +
Sbjct: 435 -SIPKQVVKLEALQ-ELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.8 bits (220), Expect = 5e-19
 Identities = 66/426 (15%), Positives = 148/426 (34%), Gaps = 40/426 (9%)

Query: 67  INLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQI 126
           ++ S NG    +P+++    +   L +S N  S    +++   S+L  L +++N+++   
Sbjct: 5   VDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 127 PKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGG-KIPTTLGLLRNLV 185
                   +L+ L L +N L   +         L+ + +  N+     I    G +  L 
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118

Query: 186 YLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI-PDSLSN--ASNLELL 242
           +L ++                  + +L   K L +    +     P+ L +    +L ++
Sbjct: 119 FLGLSTTHL-------EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

Query: 243 ELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFV-TFLTNCSSLKLPHSIAN 301
                +F   + +   ++ NL + N++        +  L  +    TN     L  +   
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231

Query: 302 LS-------------STMTHFYIGGNQILGIIHFGI-----RNLVNLIALGMQSNQLHGT 343
            +             +T+ +F I   ++ G + F        +L  L    + S+     
Sbjct: 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291

Query: 344 IPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLI 403
              +     N+ I +   +            ++   +L+ S+N L   +  + G+   L 
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351

Query: 404 GFDASHITLTGALPQQLLSITTLS--LYLDLSHNLLNGSLLLQV-GNLKNLILLDISGNQ 460
                   L   L +     T +     LD+S N ++           K+L+ L++S N 
Sbjct: 352 TLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 461 FSGVIP 466
            +  I 
Sbjct: 411 LTDTIF 416

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.6 bits (147), Expect = 5e-10
 Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 6/190 (3%)

Query: 286 FLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP 345
           FL + S   L H   +LS   T   I  N I  +    I +L  L  L +  N++     
Sbjct: 3   FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 346 DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSV-GNCQNL-- 402
            V    + L+ L L  N L   I         L +L+LS N+          GN   L  
Sbjct: 63  SVFKFNQELEYLDLSHNKLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119

Query: 403 IGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS 462
           +G   +H+  +  LP   L+I+ + L L  ++        LQ  N ++L ++  +  +F 
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179

Query: 463 GVIPVTLSIC 472
            ++ V++   
Sbjct: 180 FILDVSVKTV 189

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.6 bits (215), Expect = 7e-19
 Identities = 65/305 (21%), Positives = 111/305 (36%), Gaps = 34/305 (11%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
            T LDL N  I  +       L  L  + L +N       +    L +L+KL +S N   
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLT-GQLPDFVGNL 157
             IP NL     L  LR+ +N++  ++PK +   L  +  + +  N L          + 
Sbjct: 116 -EIPPNLPS--SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK 217
             L  + I    L   IP    L   L  L+++ N+         ++  + L+    L +
Sbjct: 172 LKLNYLRISEAKL-TGIPK--DLPETLNELHLDHNKI-------QAIELEDLLRYSKLYR 221

Query: 218 LCIAENNFVGSIPD-SLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG 276
           L +  +N +  I + SLS    L  L L  N+   +V      LK L V+ L  NN+   
Sbjct: 222 LGLG-HNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279

Query: 277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI-LGIIHFGI-RNLVNLIALG 334
             ND   V F    +                   +  N +    +     R + + +A+ 
Sbjct: 280 GVNDFCPVGFGVKRAYY-------------NGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326

Query: 335 MQSNQ 339
             + +
Sbjct: 327 FGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 66/333 (19%), Positives = 115/333 (34%), Gaps = 45/333 (13%)

Query: 63  FLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKL 122
            LR +  SD G    +P+EI        L+L NN  S     +      L  L + NNK+
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 123 EGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLR 182
                K    L KLQ L +  N+L  ++P  +   S+L  + I  N +          LR
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 183 NLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELL 242
           N+  + +  N        +          L  L  L I+E      IP  L     L  L
Sbjct: 148 NMNCIEMGGNPL-----ENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL--PETLNEL 198

Query: 243 ELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANL 302
            L  N+ +     D      L  L L  N +                   ++   S++ L
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQI-----------------RMIE-NGSLSFL 240

Query: 303 SSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD-------VIGELKNLQ 355
            + +   ++  N+ L  +  G+ +L  L  + + +N +   +            +     
Sbjct: 241 PT-LRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYN 297

Query: 356 ILSLFGNFLHGSI--PSSLGNLTKLANLELSSN 386
            +SLF N +      P++   +T    ++  + 
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.6 bits (176), Expect = 7e-14
 Identities = 55/332 (16%), Positives = 106/332 (31%), Gaps = 42/332 (12%)

Query: 136 LQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195
           L+ +      L   +P  +       ++ ++ N +          L++L  L +  N+  
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI- 90

Query: 196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSI 255
                   +       L  L+KL I++N+ V  IP +L   S+L  L +  N+       
Sbjct: 91  ------SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKG 141

Query: 256 DFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQ 315
            FS L+N+  + +  N L         F         LKL            +  I   +
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAF-------DGLKL-----------NYLRISEAK 183

Query: 316 ILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNL 375
           + GI          L  L +  N++     + +     L  L L  N +      SL  L
Sbjct: 184 LTGI---PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240

Query: 376 TKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLT----GALPQQLLSITTLSL-YL 430
             L  L L +N L   +P  + + + L         +T             +       +
Sbjct: 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299

Query: 431 DLSHNLLNGSLLLQV--GNLKNLILLDISGNQ 460
            L +N +    +       + + + +     +
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 53/307 (17%), Positives = 95/307 (30%), Gaps = 64/307 (20%)

Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
           L+V+      L   +P    +  +   L++  N           L  D    L +L  L 
Sbjct: 35  LRVVQCSDLGLK-AVPK--EISPDTTLLDLQNNDI-------SELRKDDFKGLQHLYALV 84

Query: 220 IAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTAN 279
           +  N        + S    L+ L ++ N       I  +   +L  L +  N +      
Sbjct: 85  LVNNKISKIHEKAFSPLRKLQKLYISKNHLV---EIPPNLPSSLVELRIHDNRI------ 135

Query: 280 DLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI-LGIIHFGIRNLVNLIALGMQSN 338
                        +      + L + M    +GGN +       G  + + L  L +   
Sbjct: 136 -----------RKVP-KGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 339 QLHGTIPDVIGELKNLQILSLFGNFLHGSIPS-SLGNLTKLANLELSSNSLQGNIPLSVG 397
           +L   IP      + L  L L  N +  +I    L   +KL  L L  N ++     S+ 
Sbjct: 183 KLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 398 NCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDIS 457
               L                           L L +N L+  +   + +LK L ++ + 
Sbjct: 239 FLPTL-------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272

Query: 458 GNQFSGV 464
            N  + V
Sbjct: 273 TNNITKV 279

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.7 bits (205), Expect = 8e-18
 Identities = 53/236 (22%), Positives = 85/236 (36%), Gaps = 33/236 (13%)

Query: 158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK 217
           +A Q I++ GN +      +    RNL  L ++ N           +       L  L++
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-------ARIDAAAFTGLALLEQ 84

Query: 218 LCIAENNFVGSIP-DSLSNASNLELLELAGNQFEGKVSID---FSSLKNLAVLNLERNNL 273
           L +++N  + S+   +      L  L L     +    +    F  L  L  L L+ N L
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLYLQDNAL 141

Query: 274 GIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIAL 333
                  L   TF  +  +L             TH ++ GN+I  +     R L +L  L
Sbjct: 142 -----QALPDDTF-RDLGNL-------------THLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 334 GMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ 389
            +  N++    P    +L  L  L LF N L      +L  L  L  L L+ N   
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.6 bits (189), Expect = 8e-16
 Identities = 45/212 (21%), Positives = 77/212 (36%), Gaps = 12/212 (5%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
             + L   RI  V +        L  + L  N            L  LE+L+LS+N+   
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 101 TIPTN-LSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQLPDFV-GNL 157
           ++          L  L +    L+ ++   +   L  LQ L L  N L   LPD    +L
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDL 152

Query: 158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK 217
             L  +++ GN +          L +L  L +++N+          +      +L  L  
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-------AHVHPHAFRDLGRLMT 205

Query: 218 LCIAENNFVGSIPDSLSNASNLELLELAGNQF 249
           L +  NN      ++L+    L+ L L  N +
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.6 bits (189), Expect = 9e-16
 Identities = 46/208 (22%), Positives = 68/208 (32%), Gaps = 11/208 (5%)

Query: 67  INLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQI 126
            +    G    +P  I      +++ L  N  S     +   C  LT L + +N L    
Sbjct: 16  TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 127 PKEIGSLLKLQTLALYYNNLTGQLPDFV-GNLSALQVIYIRGNSLGGKIPTTLGLLRNLV 185
                 L  L+ L L  N     +       L  L  +++    L    P     L  L 
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 186 YLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELA 245
           YL + +N          +LP D   +L NL  L +  N        +     +L+ L L 
Sbjct: 133 YLYLQDNAL-------QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 246 GNQFEGKVSIDFSSLKNLAVLNLERNNL 273
            N+        F  L  L  L L  NNL
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 5e-15
 Identities = 47/213 (22%), Positives = 79/213 (37%), Gaps = 12/213 (5%)

Query: 64  LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLE 123
            + I L  N               L  L L +N  +       +  + L  L +++N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 124 GQIPKEI-GSLLKLQTLALYYNNLTGQLPDFV-GNLSALQVIYIRGNSLGGKIPT-TLGL 180
             +       L +L TL L    L  +L   +   L+ALQ +Y++ N+L   +P  T   
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRD 151

Query: 181 LRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLE 240
           L NL +L ++ N+         S+P      L +L +L + +N      P +  +   L 
Sbjct: 152 LGNLTHLFLHGNRIS-------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 241 LLELAGNQFEGKVSIDFSSLKNLAVLNLERNNL 273
            L L  N      +   + L+ L  L L  N  
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 14/192 (7%)

Query: 39  RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNNS 97
            +T L L +  +  + +     L+ L  ++LSDN     +       L RL  L L    
Sbjct: 57  NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116

Query: 98  FSGTIPTN-LSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQLPDFV- 154
               +        + L +L + +N L+  +P +    L  L  L L+ N ++  +P+   
Sbjct: 117 LQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAF 173

Query: 155 GNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPN 214
             L +L  + +  N +    P     L  L+ L +  N          +LP + L  L  
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-------SALPTEALAPLRA 226

Query: 215 LKKLCIAENNFV 226
           L+ L + +N +V
Sbjct: 227 LQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 32/147 (21%), Positives = 47/147 (31%), Gaps = 8/147 (5%)

Query: 328 VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNS 387
                + +  N++           +NL IL L  N L     ++   L  L  L+LS N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 388 LQGNIPLSV-GNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVG 446
              ++  +       L         L   L   L        YL L  N L     L   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ---ALPDD 147

Query: 447 ---NLKNLILLDISGNQFSGVIPVTLS 470
              +L NL  L + GN+ S V      
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFR 174

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.8 bits (207), Expect = 2e-17
 Identities = 79/438 (18%), Positives = 135/438 (30%), Gaps = 66/438 (15%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQ--EIGNLYRLEKLELSNNSF 98
             LD+S+ R+  +       ++ LR+++LS N F   +P   E GNL +L  L LS   F
Sbjct: 103 EYLDVSHNRLQNISC---CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKF 158

Query: 99  SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNN---LTGQLPDFVG 155
                  ++       L    +        E   +     L L ++     + Q+   V 
Sbjct: 159 RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218

Query: 156 NLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNL 215
            L  LQ+  I+ N    +   T           +N       +++  S+          +
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278

Query: 216 KKLCIAENNFVGSIPDSLSNASN-----LELLELAGNQFEGKVSIDFSSLKNLAVLNLER 270
           + L I        I       S      L +  +    F       +S    + +  L  
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338

Query: 271 NNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNL 330
           ++                      +        S+ T      N     +  G   L  L
Sbjct: 339 SDTPF-------------------IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 331 IALGMQSNQLHGTIPDVIGELKNLQILSLFGNFL----HGSIPSSLGNLTKLANLELSSN 386
             L +Q N L      V    KN+  L      L      +   +      +  L LSSN
Sbjct: 380 QTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438

Query: 387 SLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVG 446
            L G++            F          LP ++         LDL +N +  S+   V 
Sbjct: 439 MLTGSV------------FRC--------LPPKVK-------VLDLHNNRIM-SIPKDVT 470

Query: 447 NLKNLILLDISGNQFSGV 464
           +L+ L  L+++ NQ   V
Sbjct: 471 HLQALQELNVASNQLKSV 488

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.5 bits (201), Expect = 1e-16
 Identities = 76/430 (17%), Positives = 138/430 (32%), Gaps = 27/430 (6%)

Query: 40  VTELDLSNQRIGGVLSPYV-GNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNNS 97
              L LS   I   L       LS LR + LS N     +   +      LE L++S+N 
Sbjct: 54  TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 98  FSGTIPTNLSRCSELTHLRVANNKLEGQIP--KEIGSLLKLQTLALYYNNLTGQLPDFVG 155
                   ++    L HL ++ N  +  +P  KE G+L KL  L L            V 
Sbjct: 112 LQNISCCPMAS---LRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 156 NLSALQV-IYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPN 214
           +L    + + +    + G    +L +  N   L++  +    + S   ++  + L +L  
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHP-NSLFSVQVNMSVNALGHL-Q 224

Query: 215 LKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG 274
           L  + + + N    +           LL +     E          +      +E  N+ 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 275 IGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALG 334
             T  +       T   +      I ++ +            L            +    
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKN---------QVFLFSKEALYSVFAEMNIKM 335

Query: 335 MQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ--GNI 392
           +  +              +   L+   N    S+      L +L  L L  N L+    +
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 393 PLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLI 452
            L   N  +L   D S  +L      +  +     L L+LS N+L GS+   +     + 
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVK 453

Query: 453 LLDISGNQFS 462
           +LD+  N+  
Sbjct: 454 VLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 51/313 (16%), Positives = 101/313 (32%), Gaps = 44/313 (14%)

Query: 64  LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLS-----RCSELTHLRVA 118
           L  I L+D      +            L ++      T   ++          + +L + 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 119 NNKLEGQIPKEIGSLLKLQTLALYYNNLTGQ----LPDFVGN-LSALQVIYIRGNSLGGK 173
           N  +  +I +E  +  +    +L   ++  Q      + + +  + + +  +  +     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 174 IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNF--VGSIPD 231
                    +  +LN  +N F           F     L  L+ L +  N       +  
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVF-------TDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397

Query: 232 SLSNASNLELLELAGNQFE-GKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNC 290
              N S+LE L+++ N           +  +++ VLNL  N L       L         
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--------- 448

Query: 291 SSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD-VIG 349
                          +    +  N+ +  I   + +L  L  L + SNQL  ++PD V  
Sbjct: 449 ------------PPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLK-SVPDGVFD 494

Query: 350 ELKNLQILSLFGN 362
            L +LQ + L  N
Sbjct: 495 RLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 46/245 (18%), Positives = 76/245 (31%), Gaps = 20/245 (8%)

Query: 37  HQRVTELDLSNQRIGGV-----LSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKL 91
            + V  L++ N  I         +     L  L   ++ +  F             +   
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 92  ELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLP 151
            LS +             S  T L    N     + +   +L +LQTL L  N L     
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFF 393

Query: 152 DFVGNLSALQVIYIRGNSLG----GKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207
                   +  +     SL          T     +++ LN++ N             F 
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT-------GSVFR 446

Query: 208 ILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLN 267
            L   P +K L +  N    SIP  +++   L+ L +A NQ +      F  L +L  + 
Sbjct: 447 CLP--PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503

Query: 268 LERNN 272
           L  N 
Sbjct: 504 LHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 63/370 (17%), Positives = 131/370 (35%), Gaps = 35/370 (9%)

Query: 41  TELDLSNQRIGGV-LSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
           T L LS  +   + L P          ++L      G   + +          + + +  
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208

Query: 100 GTIPTNLSRCS----ELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVG 155
            ++  N+S  +    +L+++++ +   +  +            L +   ++       V 
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268

Query: 156 NLSALQV-----IYIRGNSLGGKIPTTLG-----LLRNLVYLNVNENQFWYVSSFSGSLP 205
                       + I   ++  +I           L++L+  +V    F     FS    
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF----LFSKEAL 324

Query: 206 FDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAV 265
           + +   + N+K L I++  F+  +     + S+   L    N F   V    S+LK L  
Sbjct: 325 YSVFAEM-NIKMLSISDTPFIHMVCPP--SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381

Query: 266 LNLERNNLGI--GTANDLGFVTFLT--NCSSLKLPHSIAN----LSSTMTHFYIGGNQIL 317
           L L+RN L      A     ++ L   + S   L     +     + ++    +  N + 
Sbjct: 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 318 GIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIP-SSLGNLT 376
           G +   +     +  L + +N++  +IP  +  L+ LQ L++  N L  S+P      LT
Sbjct: 442 GSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT 497

Query: 377 KLANLELSSN 386
            L  + L  N
Sbjct: 498 SLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
           +    LS      +      + S   ++N + N F   + Q    L RL+ L L  N   
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 100 GTIPTNLSRCSELTHLRVANNKL----EGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVG 155
                       ++ L   +  L         +       +  L L  N LTG +     
Sbjct: 391 -NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--C 447

Query: 156 NLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNL 215
               ++V+ +  N +   IP  +  L+ L  LNV  NQ         S+P  +   L +L
Sbjct: 448 LPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL-------KSVPDGVFDRLTSL 499

Query: 216 KKLCIAENNF 225
           + + + +N +
Sbjct: 500 QYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 8/190 (4%)

Query: 285 TFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTI 344
             + + S+  L H   +L        +  N I  +    I  L  L  L +  N++    
Sbjct: 33  ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD 92

Query: 345 PDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSV--GNCQNL 402
             V    ++L+ L +  N L  +I      +  L +L+LS N     +P+    GN   L
Sbjct: 93  FHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKL 148

Query: 403 --IGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQ 460
             +G  A+       LP   L ++ + L L   H     +  LQ+ N   L L+    + 
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208

Query: 461 FSGVIPVTLS 470
           FS  + ++++
Sbjct: 209 FSVQVNMSVN 218

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 33/179 (18%), Positives = 68/179 (37%), Gaps = 8/179 (4%)

Query: 20  NNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIP 79
             +I+   ++ + C       T L+ +       +      L  L+ + L  NG      
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFF 393

Query: 80  QEIGNLYRLEKLELSNNSF----SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLK 135
           +       +  LE  + S     S       +    +  L +++N L G + + +    K
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--K 451

Query: 136 LQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF 194
           ++ L L+ N +   +P  V +L ALQ + +  N L          L +L Y+ +++N +
Sbjct: 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.5 bits (198), Expect = 2e-16
 Identities = 52/269 (19%), Positives = 107/269 (39%), Gaps = 31/269 (11%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
             + +L  + +          L+ +  I  +++     + Q I  L  + KL L+ N  +
Sbjct: 23  TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 78

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSA 159
                 L+    L  L +  NK++  +   +  L KL++L+L +N ++  +     +L  
Sbjct: 79  DI--KPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-DINGL-VHLPQ 132

Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
           L+ +Y+  N +     T L  L  L  L++ +NQ   +S          L  L  L+ L 
Sbjct: 133 LESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQ---ISDIVP------LAGLTKLQNLY 181

Query: 220 IAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTAN 279
           ++  N +  +  +L+   NL++LEL   +    ++   +   NL V N  +N        
Sbjct: 182 LS-KNHISDL-RALAGLKNLDVLELFSQEC---LNKPINHQSNLVVPNTVKNTD-----G 231

Query: 280 DLGFVTFLTNCSSLKLPHSIANLSSTMTH 308
            L     +++    + P+   +L      
Sbjct: 232 SLVTPEIISDDGDYEKPNVKWHLPEFTNE 260

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.7 bits (188), Expect = 4e-15
 Identities = 54/285 (18%), Positives = 96/285 (33%), Gaps = 46/285 (16%)

Query: 112 LTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLG 171
           +      +  ++   P    +  +     L   ++T         L+++  I    + + 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI- 55

Query: 172 GKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPD 231
            K    +  L N+  L +N N+   ++          L NL NL  L + EN  +  +  
Sbjct: 56  -KSVQGIQYLPNVTKLFLNGNK---LTDIKP------LTNLKNLGWLFLDENK-IKDL-S 103

Query: 232 SLSNASNLELLELAGNQFEGKVSID-FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNC 290
           SL +   L+ L L  N       I+    L  L  L L  N +          +T L+  
Sbjct: 104 SLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITD--------ITVLSRL 152

Query: 291 SSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGE 350
           + L                 +  NQI  I+   +  L  L  L +  N +  +    +  
Sbjct: 153 TKLD-------------TLSLEDNQISDIV--PLAGLTKLQNLYLSKNHI--SDLRALAG 195

Query: 351 LKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLS 395
           LKNL +L LF         +   NL     ++ +  SL     +S
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.0 bits (181), Expect = 4e-14
 Identities = 54/283 (19%), Positives = 103/283 (36%), Gaps = 46/283 (16%)

Query: 84  NLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYY 143
                 K  L   S +  +    +  + +  +   N+ ++  + + I  L  +  L L  
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74

Query: 144 NNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGS 203
           N LT   P  + NL  L  +++  N +   + ++L  L+ L  L++  N    +S  +G 
Sbjct: 75  NKLTDIKP--LTNLKNLGWLFLDENKI-KDL-SSLKDLKKLKSLSLEHNG---ISDING- 126

Query: 204 LPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSLKN 262
                LV+LP L+ L +  N    +    LS  + L+ L L  NQ      I   + L  
Sbjct: 127 -----LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTK 176

Query: 263 LAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHF 322
           L  L L +N++     +DL  +  L N                +    +   + L     
Sbjct: 177 LQNLYLSKNHI-----SDLRALAGLKN----------------LDVLELFSQECLNKPIN 215

Query: 323 GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLH 365
              NLV    +      L    P++I +  + +  ++  +   
Sbjct: 216 HQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.2 bits (179), Expect = 5e-14
 Identities = 57/268 (21%), Positives = 89/268 (33%), Gaps = 46/268 (17%)

Query: 136 LQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195
           +         +    PD     +      ++  S+      T   L ++  +  N +   
Sbjct: 1   MGETITVSTPIKQIFPD--DAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSD-- 54

Query: 196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSI 255
            + S  G      +  LPN+ KL +  N  +  I   L+N  NL  L L  N+ +    +
Sbjct: 55  -IKSVQG------IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIK---DL 102

Query: 256 D-FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGN 314
                LK L  L+LE N +          +  L +   L                Y+G N
Sbjct: 103 SSLKDLKKLKSLSLEHNGISD--------INGLVHLPQL-------------ESLYLGNN 141

Query: 315 QILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGN 374
           +I  I    +  L  L  L ++ NQ+   I   +  L  LQ L L  N +  S   +L  
Sbjct: 142 KITDIT--VLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHI--SDLRALAG 195

Query: 375 LTKLANLELSSNSLQGNIPLSVGNCQNL 402
           L  L  LEL S            N    
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVP 223

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 1e-13
 Identities = 46/255 (18%), Positives = 90/255 (35%), Gaps = 62/255 (24%)

Query: 209 LVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSLKNLAVLN 267
                   K  + + +   ++    +  ++++ +    +  +   S+     L N+  L 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLF 71

Query: 268 LERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNL 327
           L  N L      D+  +T L N   L                ++  N+I  +    +++L
Sbjct: 72  LNGNKL-----TDIKPLTNLKNLGWL----------------FLDENKIKDLS--SLKDL 108

Query: 328 VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNS 387
             L +L ++ N +  +  + +  L  L+ L L  N +  +  + L  LTKL  L L  N 
Sbjct: 109 KKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQ 164

Query: 388 LQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGN 447
           +   +PL+      L                           L LS N +  S L  +  
Sbjct: 165 ISDIVPLA--GLTKLQ-------------------------NLYLSKNHI--SDLRALAG 195

Query: 448 LKNLILLDISGNQFS 462
           LKNL +L++   +  
Sbjct: 196 LKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 42/211 (19%), Positives = 71/211 (33%), Gaps = 56/211 (26%)

Query: 257 FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI 316
             +       NL++ +           VT     + L           ++       + I
Sbjct: 17  DDAFAETIKDNLKKKS-----------VTDAVTQNELN----------SIDQIIANNSDI 55

Query: 317 LGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLT 376
             +   GI+ L N+  L +  N+L    P  +  LKNL  L L  N +   + SSL +L 
Sbjct: 56  KSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DL-SSLKDLK 109

Query: 377 KLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNL 436
           KL +L L  N +     L   +   L                           L L +N 
Sbjct: 110 KLKSLSLEHNGISDINGLV--HLPQLE-------------------------SLYLGNNK 142

Query: 437 LNGSLLLQVGNLKNLILLDISGNQFSGVIPV 467
           +  + +  +  L  L  L +  NQ S ++P+
Sbjct: 143 I--TDITVLSRLTKLDTLSLEDNQISDIVPL 171

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 25/234 (10%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
             ++      +         +L  +  ++    G      + +  L  L  LEL +N   
Sbjct: 21  AIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI- 75

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSA 159
            T    L   +++T L ++ N L+      I  L  ++TL L    +T      +  LS 
Sbjct: 76  -TDLAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDV--TPLAGLSN 130

Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
           LQV+Y+  N +     + L  L NL YL++   Q   VS  +       L NL  L  L 
Sbjct: 131 LQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQ---VSDLTP------LANLSKLTTLK 179

Query: 220 IAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNL 273
              +N +  I   L++  NL  + L  NQ      +  ++  NL ++ L    +
Sbjct: 180 AD-DNKISDIS-PLASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 49/267 (18%), Positives = 96/267 (35%), Gaps = 44/267 (16%)

Query: 132 SLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNE 191
           +L     +A   +N+T        +L  +  +   G  +       +  L NL+ L + +
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKD 72

Query: 192 NQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEG 251
           NQ   ++            NL  + +L ++ N        +++   +++ L+L   Q   
Sbjct: 73  NQITDLAPLK---------NLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD 121

Query: 252 KVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYI 311
                 + L NL VL L+ N +          ++ L   ++L              +  I
Sbjct: 122 --VTPLAGLSNLQVLYLDLNQITN--------ISPLAGLTNL-------------QYLSI 158

Query: 312 GGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSS 371
           G  Q+  +    + NL  L  L    N++    P  +  L NL  + L  N +  S  S 
Sbjct: 159 GNAQVSDLT--PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI--SDVSP 212

Query: 372 LGNLTKLANLELSSNSLQGNIPLSVGN 398
           L N + L  + L++ ++         N
Sbjct: 213 LANTSNLFIVTLTNQTITNQPVFYNNN 239

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 9e-13
 Identities = 51/306 (16%), Positives = 109/306 (35%), Gaps = 48/306 (15%)

Query: 84  NLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYY 143
            L    K+    ++ + T+    +    +T L      +     + +  L  L  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 144 NNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGS 203
           N +T   P  + NL+ +  + + GN L  K  + +  L+++  L++   Q   V+  +  
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLA-- 126

Query: 204 LPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSLKN 262
                   L NL+ L +  N  + +I   L+  +NL+ L +   Q      +   ++L  
Sbjct: 127 -------GLSNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQVS---DLTPLANLSK 174

Query: 263 LAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHF 322
           L  L  + N +     +D+  +  L N                +   ++  NQI  +   
Sbjct: 175 LTTLKADDNKI-----SDISPLASLPN----------------LIEVHLKNNQISDVS-- 211

Query: 323 GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLE 382
            + N  NL  + + +  +          L    ++           P+++ +    A+  
Sbjct: 212 PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP--IAPATISDNGTYASPN 269

Query: 383 LSSNSL 388
           L+ N  
Sbjct: 270 LTWNLT 275

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 55/260 (21%), Positives = 91/260 (35%), Gaps = 62/260 (23%)

Query: 209 LVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSLKNLAVLN 267
              L N  K+   ++N   ++    ++   +  L   G       +I+    L NL  L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 268 LERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNL 327
           L+ N +      DL  +  LT                 +T   + GN +  +    I  L
Sbjct: 70  LKDNQI-----TDLAPLKNLTK----------------ITELELSGNPLKNV--SAIAGL 106

Query: 328 VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNS 387
            ++  L + S Q+    P  +  L NLQ+L L  N +  +  S L  LT L  L + +  
Sbjct: 107 QSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQ 162

Query: 388 LQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGN 447
           +    PL+  N   L                           L    N +  S +  + +
Sbjct: 163 VSDLTPLA--NLSKLT-------------------------TLKADDNKI--SDISPLAS 193

Query: 448 LKNLILLDISGNQFSGVIPV 467
           L NLI + +  NQ S V P+
Sbjct: 194 LPNLIEVHLKNNQISDVSPL 213

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 47/234 (20%), Positives = 90/234 (38%), Gaps = 48/234 (20%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
             L+L + +I  +    + NL+ +  + LS N    +    I  L  ++ L+L++   + 
Sbjct: 66  IGLELKDNQITDL--APLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD 121

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160
              T L+  S L  L +  N++    P  +  L  LQ L++    ++        +L+ L
Sbjct: 122 V--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS--------DLTPL 169

Query: 161 QVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCI 220
                               L  L  L  ++N+   +S  +         +LPNL ++ +
Sbjct: 170 AN------------------LSKLTTLKADDNKISDISPLA---------SLPNLIEVHL 202

Query: 221 AENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG 274
             NN +  +   L+N SNL ++ L         +       NL V N+ +   G
Sbjct: 203 K-NNQISDVS-PLANTSNLFIVTLTNQTI---TNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 13/165 (7%)

Query: 304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNF 363
             +T     G  +  I   G++ L NLI L ++ NQ+  T    +  L  +  L L GN 
Sbjct: 41  DGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNP 96

Query: 364 LHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSI 423
           L     S++  L  +  L+L+S  +    PL+     NL         +T   P  L  +
Sbjct: 97  L--KNVSAIAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGL 150

Query: 424 TTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVT 468
           T L  YL + +  ++   L  + NL  L  L    N+ S + P+ 
Sbjct: 151 TNLQ-YLSIGNAQVSD--LTPLANLSKLTTLKADDNKISDISPLA 192

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 12/176 (6%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
             L L   +I  +    +  L+ L+Y+++ +       P  + NL +L  L+  +N  S 
Sbjct: 132 QVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160
              + L+    L  + + NN++    P  + +   L  + L    +T Q   +  NL   
Sbjct: 188 I--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

Query: 161 QVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLK 216
            V+        G       +  N  Y + N          + S  F+  V   N  
Sbjct: 244 NVVK----GPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTT 295

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 7e-14
 Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 17/187 (9%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS 97
           +      L       +       ++ L YI L++          I   + ++ L ++N  
Sbjct: 23  KAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 98  FSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNL 157
            +      +S  S L  LR+    +       +  L  L  L + ++     +   +  L
Sbjct: 78  ATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK 217
             +  I +  N     I   L  L  L  LN+  +    V  + G      + + P L +
Sbjct: 136 PKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDG---VHDYRG------IEDFPKLNQ 185

Query: 218 LCIAENN 224
           L      
Sbjct: 186 LYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 14/168 (8%)

Query: 81  EIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA 140
               +  L  + L+N + +    T +     +  L + N          I  L  L+ L 
Sbjct: 39  TEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLR 94

Query: 141 LYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSF 200
           +   ++T      +  L++L ++ I  ++    I T +  L  +  ++++ N    ++  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG--AITDI 152

Query: 201 SGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ 248
                   L  LP LK L I + + V      + +   L  L      
Sbjct: 153 MP------LKTLPELKSLNI-QFDGVHDY-RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 26/198 (13%), Positives = 55/198 (27%), Gaps = 28/198 (14%)

Query: 213 PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSLKNLAVLNLERN 271
              K           +   + +  ++L  + LA         +       N+  L +   
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNI 76

Query: 272 NLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLI 331
           +       +   ++ L+N   L                 I G  +       +  L +L 
Sbjct: 77  HA-----TNYNPISGLSNLERL----------------RIMGKDVTSDKIPNLSGLTSLT 115

Query: 332 ALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGN 391
            L +  +    +I   I  L  +  + L  N     I   L  L +L +L +  + +   
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY 174

Query: 392 IPLSVGNCQNLIGFDASH 409
             +   +   L    A  
Sbjct: 175 RGIE--DFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 33/237 (13%), Positives = 66/237 (27%), Gaps = 56/237 (23%)

Query: 228 SIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFL 287
           +IPDS       +             +I  + + +L  + L   N+      DL  + + 
Sbjct: 16  NIPDS-----TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINV-----TDLTGIEYA 65

Query: 288 TNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDV 347
            N                +    I            I  L NL  L +    +       
Sbjct: 66  HN----------------IKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPN 107

Query: 348 IGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDA 407
           +  L +L +L +  +    SI + +  L K+ +++LS N    +I   +     L     
Sbjct: 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK---- 162

Query: 408 SHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV 464
                                 L++  + ++      + +   L  L        G 
Sbjct: 163 ---------------------SLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 31/170 (18%)

Query: 298 SIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQIL 357
           + A ++S +T+  +    +  +   GI    N+  L + +       P  I  L NL+ L
Sbjct: 39  TEAQMNS-LTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERL 93

Query: 358 SLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALP 417
            + G  +      +L  LT L  L++S ++   +I   +     +               
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN-------------- 139

Query: 418 QQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPV 467
                       +DLS+N     ++  +  L  L  L+I  +       +
Sbjct: 140 -----------SIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGI 177

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 27/186 (14%), Positives = 64/186 (34%), Gaps = 33/186 (17%)

Query: 155 GNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPN 214
             +++L  I +   ++     T +    N+  L +N       ++++       +  L N
Sbjct: 41  AQMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIH---ATNYNP------ISGLSN 89

Query: 215 LKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG 274
           L++L I   +       +LS  ++L LL+++ +  +  +    ++L  +  ++L  N   
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA- 148

Query: 275 IGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALG 334
                 +  +  L     L                 I  + +      GI +   L  L 
Sbjct: 149 ------ITDIMPLKTLPEL-------------KSLNIQFDGVHDYR--GIEDFPKLNQLY 187

Query: 335 MQSNQL 340
             S  +
Sbjct: 188 AFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 3/108 (2%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
             L +  + +     P +  L+ L  +++S +     I  +I  L ++  ++LS N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG 148
            I   L    EL  L +  + +       I    KL  L  +   + G
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 47/229 (20%), Positives = 77/229 (33%), Gaps = 26/229 (11%)

Query: 136 LQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195
            + L L +N L         +   LQV+ +    +          L +L  L +  N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI- 88

Query: 196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSL-SNASNLELLELAGNQFEGKVS 254
                  SL       L +L+KL   E N   S+ +    +   L+ L +A N  +    
Sbjct: 89  ------QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 255 ID-FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGG 313
            + FS+L NL  L+L  N +      DL                 +  +        +  
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDL---------------RVLHQMPLLNLSLDLSL 186

Query: 314 NQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN 362
           N +   I  G    + L  L + +NQL      +   L +LQ + L  N
Sbjct: 187 NPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 48/233 (20%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNNSFS 99
             LDLS   +  + S    +   L+ ++LS       I      +L  L  L L+ N   
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 100 GTIPTNL-SRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS 158
            ++     S  S L  L      L       IG L  L+ L + +N +            
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ----------- 137

Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL 218
                     S   K+P     L NL +L+++ N+   +          +L  +P L   
Sbjct: 138 ----------SF--KLPEYFSNLTNLEHLDLSSNKIQSIYCTD----LRVLHQMPLLNLS 181

Query: 219 CIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERN 271
                N +  I         L+ L L  NQ +      F  L +L  + L  N
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 48/193 (24%), Positives = 70/193 (36%), Gaps = 17/193 (8%)

Query: 88  LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNL 146
            + L+LS N        +     EL  L ++  +++  I      SL  L TL L  N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 147 TGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF 206
                     LS+LQ +     +L       +G L+ L  LNV  N          S   
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-------QSFKL 141

Query: 207 -DILVNLPNLKKLCIAENNFVGSIP----DSLSNASNLEL-LELAGNQFEGKVSIDFSSL 260
            +   NL NL+ L ++ N    SI       L     L L L+L+ N         F  +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 261 KNLAVLNLERNNL 273
             L  L L+ N L
Sbjct: 201 -RLKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 63/241 (26%), Positives = 91/241 (37%), Gaps = 50/241 (20%)

Query: 228 SIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFL 287
            IPD+L    + + L+L+ N      S  F S   L VL+L R  +      + G    L
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSL 75

Query: 288 TNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDV 347
           ++ S+L L                 GN I  +       L +L  L      L       
Sbjct: 76  SHLSTLIL----------------TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 348 IGELKNLQILSLFGNFLHGSIPSS--LGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGF 405
           IG LK L+ L++  N +  S        NLT L +L+LSSN +Q +I  +          
Sbjct: 120 IGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD--------L 169

Query: 406 DASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLIL--LDISGNQFSG 463
                         L  +  L+L LDLS N +N    +Q G  K + L  L +  NQ   
Sbjct: 170 R------------VLHQMPLLNLSLDLSLNPMNF---IQPGAFKEIRLKELALDTNQLKS 214

Query: 464 V 464
           V
Sbjct: 215 V 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 30/177 (16%)

Query: 289 NCSSLKLPHSI-ANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDV 347
            C  L   + I  NL  +  +  +  N +  +  +   +   L  L +   ++       
Sbjct: 13  QCMELNF-YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 348 IGELKNLQILSLFGNFLHGSIPSSL-GNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFD 406
              L +L  L L GN +  S+       L+ L  L     +L                  
Sbjct: 72  YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA----------------- 113

Query: 407 ASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV-GNLKNLILLDISGNQFS 462
                   +L    +        L+++HNL+    L +   NL NL  LD+S N+  
Sbjct: 114 --------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 5e-13
 Identities = 27/145 (18%), Positives = 60/145 (41%), Gaps = 7/145 (4%)

Query: 17  SSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHG 76
           +  ++  +            +  V  L L+++ +  +   ++  L  + +++LS N    
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR- 476

Query: 77  EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEG-QIPKEIGSLLK 135
            +P  +  L  LE L+ S+N+    +   ++    L  L + NN+L+     + + S  +
Sbjct: 477 ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534

Query: 136 LQTLALYYNNLTGQLPDFVGNLSAL 160
           L  L L  N+L  Q       L+ +
Sbjct: 535 LVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 7e-11
 Identities = 48/297 (16%), Positives = 96/297 (32%), Gaps = 33/297 (11%)

Query: 6   IPHQHDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLR 65
           +        +    +      +W      +R   V   DL    +   L  +   + +  
Sbjct: 265 LTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTG 324

Query: 66  YINLSD----NGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNK 121
             +  +            ++     +L + ELS    S  + + L  C EL  L   N  
Sbjct: 325 SDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKW 383

Query: 122 LEGQI---PKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTL 178
               I    + +  LL  +    Y++ L       V  + A  +  +R   L  +     
Sbjct: 384 CLLTIILLMRALDPLLYEKETLQYFSTLKA-----VDPMRAAYLDDLRSKFLL-ENSVLK 437

Query: 179 GLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASN 238
               ++  L++       ++          L  L  +  L ++ N    ++P +L+    
Sbjct: 438 MEYADVRVLHLAHKD---LTVLCH------LEQLLLVTHLDLSHNRLR-ALPPALAALRC 487

Query: 239 LELLELAGNQFEGKVSID-FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLK 294
           LE+L+ + N  E   ++D  ++L  L  L L  N L          +  L +C  L 
Sbjct: 488 LEVLQASDNALE---NVDGVANLPRLQELLLCNNRL-----QQSAAIQPLVSCPRLV 536

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.9 bits (152), Expect = 9e-11
 Identities = 51/337 (15%), Positives = 106/337 (31%), Gaps = 27/337 (8%)

Query: 137 QTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY 196
           Q+   Y+  L G+                   S+    P T+G     + L V+E     
Sbjct: 226 QSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSV 285

Query: 197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID 256
                        V L +L    + +     +     + + + +   L  ++ E     D
Sbjct: 286 EWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRD 344

Query: 257 FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI 316
            ++ + L    L      +         + L +C  L+                +     
Sbjct: 345 SATDEQLFRCELSVEKSTVLQ-------SELESCKELQELEPENKWCLLTIILLMRALDP 397

Query: 317 LGIIHFGIRNLVNLIAL--------GMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSI 368
           L      ++    L A+            ++       +  E  ++++L L    L  ++
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TV 455

Query: 369 PSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSL 428
              L  L  + +L+LS N L+  +P ++   + L    AS   L       +  +  L  
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-----NVDGVANLPR 509

Query: 429 --YLDLSHNLLNG-SLLLQVGNLKNLILLDISGNQFS 462
              L L +N L   + +  + +   L+LL++ GN   
Sbjct: 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 50/235 (21%), Positives = 100/235 (42%), Gaps = 26/235 (11%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
             + +L  + +          L+ +  I  +++     + Q I  L  + KL L+ N  +
Sbjct: 26  TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 81

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSA 159
                 L+    L  L +  NK++  +   +  L KL++L+L +N ++    + + +L  
Sbjct: 82  DI--KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS--DINGLVHLPQ 135

Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
           L+ +Y+  N +     T L  L  L  L++ +NQ   +S          L  L  L+ L 
Sbjct: 136 LESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQ---ISDIVP------LAGLTKLQNLY 184

Query: 220 IAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG 274
           ++  N +  +  +L+   NL++LEL   +    ++   +   NL V N  +N  G
Sbjct: 185 LS-KNHISDL-RALAGLKNLDVLELFSQEC---LNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 53/258 (20%), Positives = 89/258 (34%), Gaps = 44/258 (17%)

Query: 132 SLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNE 191
           +  +     L   ++T         L+++  I    + +  K    +  L N+  L +N 
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNG 77

Query: 192 NQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEG 251
           N+   ++          L NL NL  L + EN  V  +  SL +   L+ L L  N    
Sbjct: 78  NK---LTDIKP------LANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS- 125

Query: 252 KVSID-FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFY 310
              I+    L  L  L L  N +          +T L+  + L                 
Sbjct: 126 --DINGLVHLPQLESLYLGNNKITD--------ITVLSRLTKLD-------------TLS 162

Query: 311 IGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPS 370
           +  NQI  I+   +  L  L  L +  N +  +    +  LKNL +L LF         +
Sbjct: 163 LEDNQISDIV--PLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPIN 218

Query: 371 SLGNLTKLANLELSSNSL 388
              NL     ++ +  SL
Sbjct: 219 HQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 51/283 (18%), Positives = 99/283 (34%), Gaps = 46/283 (16%)

Query: 84  NLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYY 143
                 K  L   S +  +    +  + +  +   N+ ++  + + I  L  +  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77

Query: 144 NNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGS 203
           N LT   P  + NL  L  +++  N +  K  ++L  L+ L  L++  N    ++     
Sbjct: 78  NKLTDIKP--LANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGISDINGLV-- 131

Query: 204 LPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSLKN 262
                  +LP L+ L +  N    +    LS  + L+ L L  NQ      I   + L  
Sbjct: 132 -------HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTK 179

Query: 263 LAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHF 322
           L  L L +N++     +DL  +  L N                +    +   + L     
Sbjct: 180 LQNLYLSKNHI-----SDLRALAGLKN----------------LDVLELFSQECLNKPIN 218

Query: 323 GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLH 365
              NLV    +      L    P++I +  + +  ++  +   
Sbjct: 219 HQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 36/230 (15%)

Query: 233 LSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSS 292
               +      L        V+   + L ++  +    +++       +  + +L N   
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDI-----KSVQGIQYLPN--- 69

Query: 293 LKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELK 352
                        +T  ++ GN++  I    + NL NL  L +  N++       + +LK
Sbjct: 70  -------------VTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLSS--LKDLK 112

Query: 353 NLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITL 412
            L+ LSL  N +  S  + L +L +L +L L +N +     LS      L         +
Sbjct: 113 KLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI 168

Query: 413 TGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS 462
           +  +P  L  +T L   L LS N +  S L  +  LKNL +L++   +  
Sbjct: 169 SDIVP--LAGLTKLQ-NLYLSKNHI--SDLRALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 23/226 (10%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
           T+L L+  ++   + P + NL  L ++ L +N    ++   + +L +L+ L L +N    
Sbjct: 71  TKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGI-- 124

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160
           +    L    +L  L + NNK+       +  L KL TL+L  N ++      +  L+ L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKL 180

Query: 161 QVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCI 220
           Q +Y+  N +       L  L+NL  L +   +         + P +   NL     +  
Sbjct: 181 QNLYLSKNHI--SDLRALAGLKNLDVLELFSQEC-------LNKPINHQSNLVVPNTVKN 231

Query: 221 AENNFVGSIPDSLSNASNLELLELAGN--QFEGKVSIDFSSLKNLA 264
            + + V   P+ +S+  + E   +  +  +F  +VS  F     + 
Sbjct: 232 TDGSLVT--PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 275

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 49/304 (16%), Positives = 89/304 (29%), Gaps = 63/304 (20%)

Query: 89  EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG 148
                  +  +  IP++L R      LR    KL             L+ + +  N++  
Sbjct: 12  RVFLCQESKVT-EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 149 QLPDFV-GNLSALQVIYI-RGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF 206
            +   V  NL  L  I I + N+L    P     L NL YL ++             LP 
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-------KHLPD 121

Query: 207 DILVNLPNLKKLCIAENNFVGSIPDSLSN--ASNLELLELAGNQFEGKVSIDFSSLKNLA 264
              ++      L I +N  + +I  +     +    +L L  N  +   +  F+  +   
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE 181

Query: 265 VLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGI 324
           +   + NNL                                              +   +
Sbjct: 182 LNLSDNNNLEE--------------------------------------------LPNDV 197

Query: 325 -RNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL 383
                  + L +   ++H      +  LK L+  S +       +P+ L  L  L    L
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASL 253

Query: 384 SSNS 387
           +  S
Sbjct: 254 TYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 5e-12
 Identities = 35/234 (14%), Positives = 66/234 (28%), Gaps = 17/234 (7%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNNSF 98
             EL     ++  +          L  I +S N     I  ++  NL +L ++ +   + 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 99  SGTIPTN-LSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQLPD--FV 154
              I          L +L ++N  ++  +P       L+   L +  N     +    FV
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 155 GNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPN 214
           G      ++++  N +     +     +       + N           LP D+      
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-------ELPNDVFHGASG 203

Query: 215 LKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNL 268
              L I+           L N   L            K       L  L   +L
Sbjct: 204 PVILDISRTRIHSLPSYGLENLKKLRARSTYNL----KKLPTLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 6e-10
 Identities = 48/298 (16%), Positives = 89/298 (29%), Gaps = 59/298 (19%)

Query: 65  RYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEG 124
           R     ++    EIP ++       +L               S   +L  + ++ N +  
Sbjct: 12  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 125 QIPKEI-GSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRN 183
            I  ++  +L KL  + +   N          NL  +              P     L N
Sbjct: 69  VIEADVFSNLPKLHEIRIEKAN----------NLLYIN-------------PEAFQNLPN 105

Query: 184 LVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSN--ASNLEL 241
           L YL ++             LP    ++      L I +N  + +I  +     +    +
Sbjct: 106 LQYLLISNTGI-------KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 242 LELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIAN 301
           L L  N  +   +  F+  +   +   + NNL                   L        
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL-----------------EELP-NDVFHG 200

Query: 302 LSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSL 359
            S       I   +I  +  +G+ NL  L A    + +    +P  + +L  L   SL
Sbjct: 201 ASG-PVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 40/259 (15%), Positives = 76/259 (29%), Gaps = 33/259 (12%)

Query: 174 IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIP-DS 232
           IP+   L RN + L     +          +         +L+K+ I++N+ +  I  D 
Sbjct: 24  IPS--DLPRNAIELRFVLTKLR-------VIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 233 LSNASNLELLELA-GNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS 291
            SN   L  + +   N         F +L NL  L +    +                  
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK----------------- 117

Query: 292 SLKLPHSIANLSSTMTHFYIGGNQILGIIHFG-IRNL-VNLIALGMQSNQLHGTIPDVIG 349
              LP      S       I  N  +  I       L    + L +  N +         
Sbjct: 118 --HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175

Query: 350 ELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASH 409
             +  ++     N L           +    L++S   +       + N + L      +
Sbjct: 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

Query: 410 ITLTGALPQQLLSITTLSL 428
           +     L ++L+++   SL
Sbjct: 236 LKKLPTL-EKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 16/176 (9%)

Query: 296 PHSIANLSSTMTHFYIGGNQILGIIHFGI-RNLVNLIALGMQ-SNQLHGTIPDVIGELKN 353
             + +     +    I  N +L +I   +  NL  L  + ++ +N L    P+    L N
Sbjct: 47  KGAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105

Query: 354 LQILSLFGNFLHGSIPS-SLGNLTKLANLELSSNSLQGNIPLSV--GNCQNLIGFDASHI 410
           LQ L +    +   +P     +  +   L++  N     I  +   G     +    +  
Sbjct: 106 LQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164

Query: 411 TLTGALPQQLLSITTLSLYLDLSHNLL----NGSLLLQVGNLKNLILLDISGNQFS 462
            +   +     + T L       +N L    N             ++LDIS  +  
Sbjct: 165 GIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVF----HGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 33/187 (17%), Positives = 69/187 (36%), Gaps = 13/187 (6%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP-DV 347
            C   K+    ++L            ++  I         +L  + +  N +   I  DV
Sbjct: 15  LCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 348 IGELKNLQILSLF-GNFLHGSIPSSLGNLTKLANLELSSNSLQGNIP--LSVGNCQNLIG 404
              L  L  + +   N L    P +  NL  L  L +S+  ++ ++P    + + Q ++ 
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLL 133

Query: 405 FDASHITLTGALPQQLLSITTLSLYLDLSHNLL--------NGSLLLQVGNLKNLILLDI 456
               +I +        + ++  S+ L L+ N +        NG+ L ++    N  L ++
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL 193

Query: 457 SGNQFSG 463
             + F G
Sbjct: 194 PNDVFHG 200

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 86/444 (19%), Positives = 145/444 (32%), Gaps = 82/444 (18%)

Query: 64  LRYINLSDNGFHGEIPQEIG-NLYRLEKLELSNNSFSGT----IPTNLSRCSELTHLRVA 118
           ++ +++           E+   L + + + L +   +      I + L     L  L + 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 119 NNKLEGQIPKEIGSLLK-----LQTLALYYNNLTGQ----LPDFVGNLSALQVIYIRGNS 169
           +N+L       +   L+     +Q L+L    LTG     L   +  L  LQ +++  N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 170 LGGKIPTTL--GLLRN---LVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENN 224
           LG      L  GLL     L  L +        S+ S      +L   P+ K+L ++ N+
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSL---SAASCEPLASVLRAKPDFKELTVSNND 181

Query: 225 F----VGSIPDSL-SNASNLELLELAGNQFEGKVSIDFSSL----KNLAVLNLERNNLGI 275
                V  +   L  +   LE L+L           D   +     +L  L L  N LG 
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 276 GTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI----LGIIHFGIRNLVNLI 331
               +L        C  L  P       S +   +I    I     G +   +R   +L 
Sbjct: 242 VGMAEL--------CPGLLHPS------SRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287

Query: 332 ALGMQSNQLHGTIPDVIGEL-----KNLQILSLFGNFLHG----SIPSSLGNLTKLANLE 382
            L +  N+L      ++ E        L+ L +              S L     L  L+
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347

Query: 383 LSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLN---- 438
           +S+N L+                DA    L   L Q    +      L L+   ++    
Sbjct: 348 ISNNRLE----------------DAGVRELCQGLGQPGSVLRV----LWLADCDVSDSSC 387

Query: 439 GSLLLQVGNLKNLILLDISGNQFS 462
            SL   +    +L  LD+S N   
Sbjct: 388 SSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 58/404 (14%), Positives = 119/404 (29%), Gaps = 67/404 (16%)

Query: 35  HRHQRVTELDLSNQRIGG----VLSPYVGNLSF-LRYINLSDNGFHGE----IPQEIGNL 85
             +  + EL+L +  +G      +   +   S  ++ ++L +    G     +   +  L
Sbjct: 53  RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 112

Query: 86  YRLEKLELSNNSFSGT-----IPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLK----L 136
             L++L LS+N              L     L  L++    L     + + S+L+     
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 137 QTLALYYNNLTGQ-----LPDFVGNLSALQVIYIRGNSLGGK----IPTTLGLLRNLVYL 187
           + L +  N++              +   L+ + +    +       +   +    +L  L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232

Query: 188 NVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNF----VGSIPDSLSNASNLELLE 243
            +  N+          L   +L     L+ L I E        G +   L    +L+ L 
Sbjct: 233 ALGSNKLG--DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290

Query: 244 LAGNQFEGKVSIDFSSL-----KNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHS 298
           LAGN+   + +             L  L ++  +      +    V  L     L     
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV--LAQNRFL----- 343

Query: 299 IANLSSTMTHFYIGGNQI--LGIIHFG---IRNLVNLIALGMQSNQLH----GTIPDVIG 349
                       I  N++   G+        +    L  L +    +      ++   + 
Sbjct: 344 --------LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395

Query: 350 ELKNLQILSLFGNFLHGSIPSSLG-----NLTKLANLELSSNSL 388
              +L+ L L  N L  +    L          L  L L     
Sbjct: 396 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 15/188 (7%)

Query: 88  LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNL 146
            +KL+L +N  S        R ++L  L + +NKL+  +P  I   L  L+TL +  N L
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 147 TGQLPDFV-GNLSALQVIYIRGNSLGGKIPTTL-GLLRNLVYLNVNENQFWYVSSFSGSL 204
              LP  V   L  L  + +  N L   +P  +   L  L YL++  N+         SL
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ-------SL 148

Query: 205 PFDILVNLPNLKKLCIAENNFVGSIPDSL-SNASNLELLELAGNQFEGKVSIDFSSLKNL 263
           P  +   L +LK+L +  NN +  +P+      + L+ L+L  NQ +      F SL+ L
Sbjct: 149 PKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207

Query: 264 AVLNLERN 271
            +L L+ N
Sbjct: 208 KMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 50/178 (28%), Positives = 73/178 (41%), Gaps = 19/178 (10%)

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFV-GNLSA 159
            IP+N+   ++   L + +NKL     K    L KL+ L L  N L   LP  +   L  
Sbjct: 30  AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
           L+ +++  N L          L NL  L ++ NQ         SLP  +  +L  L  L 
Sbjct: 87  LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL-------KSLPPRVFDSLTKLTYLS 139

Query: 220 IAENNFVGSIP----DSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNL 273
           +  N    S+P    D L   ++L+ L L  NQ +      F  L  L  L L+ N L
Sbjct: 140 LGYNELQ-SLPKGVFDKL---TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 42/218 (19%)

Query: 174 IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSL 233
           IP       +   L++  N+         SLP      L  L+ L +  +N + ++P  +
Sbjct: 35  IPA------DTKKLDLQSNKL-------SSLPSKAFHRLTKLRLLYL-NDNKLQTLPAGI 80

Query: 234 -SNASNLELLELAGNQFEGKVSID---FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTN 289
                NLE L +  N+ +   ++    F  L NLA L L+RN L                
Sbjct: 81  FKELKNLETLWVTDNKLQ---ALPIGVFDQLVNLAELRLDRNQLK--------------- 122

Query: 290 CSSLKLPHSI-ANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
                LP  +  +L+  +T+  +G N++  +       L +L  L + +NQL        
Sbjct: 123 ----SLPPRVFDSLTK-LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177

Query: 349 GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSN 386
            +L  L+ L L  N L      +  +L KL  L+L  N
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 49/228 (21%), Positives = 77/228 (33%), Gaps = 52/228 (22%)

Query: 136 LQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195
            + L L  N L+         L+ L+++Y+  N L          L+NL  L V +N+  
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSI 255
                  +LP  +   L NL +L +  N    S+P  +                      
Sbjct: 99  -------ALPIGVFDQLVNLAELRLDRNQLK-SLPPRV---------------------- 128

Query: 256 DFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSI-ANLSSTMTHFYIGGN 314
            F SL  L  L+L  N L                     LP  +   L+S +    +  N
Sbjct: 129 -FDSLTKLTYLSLGYNEL-------------------QSLPKGVFDKLTS-LKELRLYNN 167

Query: 315 QILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN 362
           Q+  +       L  L  L + +NQL          L+ L++L L  N
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 6/131 (4%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNNSFS 99
             L +++ ++  +       L  L  + L  N     +P  +  +L +L  L L  N   
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 100 GTIPTNL-SRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQLPDFVGNL 157
            ++P  +  + + L  LR+ NN+L+ ++P+     L +L+TL L  N L         +L
Sbjct: 147 -SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204

Query: 158 SALQVIYIRGN 168
             L+++ ++ N
Sbjct: 205 EKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366
              Y+  N++  +     + L NL  L +  N+L      V  +L NL  L L  N L  
Sbjct: 64  RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK- 122

Query: 367 SIPSSL-GNLTKLANLELSSNSLQ 389
           S+P  +  +LTKL  L L  N LQ
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQ 146

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.5 bits (160), Expect = 5e-12
 Identities = 53/213 (24%), Positives = 77/213 (36%), Gaps = 16/213 (7%)

Query: 60  NLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVAN 119
            ++    +N         +P ++        L LS N         L   + LT L +  
Sbjct: 8   KVASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 120 NKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLG 179
            +L     +  G+L  L TL L +N L   LP     L AL V+ +  N L       L 
Sbjct: 65  AEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 180 LLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSL-SNASN 238
            L  L  L +  N+         +LP  +L   P L+KL +A NN    +P  L +   N
Sbjct: 122 GLGELQELYLKGNEL-------KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLEN 173

Query: 239 LELLELAGNQFEGKVSIDFSSLKNLAVLNLERN 271
           L+ L L  N     +   F     L    L  N
Sbjct: 174 LDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.1 bits (159), Expect = 6e-12
 Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 8/166 (4%)

Query: 228 SIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG-IGTANDLGFVT- 285
           ++P  L    +  +L L+ N               L  LNL+R  L  +     L  +  
Sbjct: 24  ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81

Query: 286 -FLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTI 344
             L++     LP     L +  T   +  N++  +    +R L  L  L ++ N+L    
Sbjct: 82  LDLSHNQLQSLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 345 PDVIGELKNLQILSLFGNFLHGSIPSSL-GNLTKLANLELSSNSLQ 389
           P ++     L+ LSL  N L   +P+ L   L  L  L L  NSL 
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 45/229 (19%), Positives = 73/229 (31%), Gaps = 37/229 (16%)

Query: 136 LQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195
              +     NLT  LP          ++++  N L      TL     L  LN++  +  
Sbjct: 12  HLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSI 255
            +              LP L  L ++ N    S+P        L +L+++ N+    + +
Sbjct: 69  KLQVDGT---------LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117

Query: 256 D-FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSI-ANLSSTMTHFYIGG 313
                L  L  L L+ N L                     LP  +       +    +  
Sbjct: 118 GALRGLGELQELYLKGNEL-------------------KTLPPGLLTPTPK-LEKLSLAN 157

Query: 314 NQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN 362
           N +  +    +  L NL  L +Q N L+ TIP        L    L GN
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.0 bits (143), Expect = 6e-10
 Identities = 51/208 (24%), Positives = 71/208 (34%), Gaps = 37/208 (17%)

Query: 41  TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
           T L LS   +       +   + L  +NL          Q  G L  L  L+LS+N    
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRA--ELTKLQVDGTLPVLGTLDLSHNQLQ- 90

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQLPDFVGNLSA 159
           ++P        LT L V+ N+L   +P      L +LQ L L  N L   LP        
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLP-------- 140

Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
                          P  L     L  L++  N           LP  +L  L NL  L 
Sbjct: 141 ---------------PGLLTPTPKLEKLSLANNNLT-------ELPAGLLNGLENLDTLL 178

Query: 220 IAENNFVGSIPDSLSNASNLELLELAGN 247
           + + N + +IP     +  L    L GN
Sbjct: 179 L-QENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 33/231 (14%)

Query: 156 NLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNL 215
            +++   +     +L   +P    L ++   L+++EN          +     L+    L
Sbjct: 8   KVASHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLL-------YTFSLATLMPYTRL 57

Query: 216 KKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGI 275
            +L +     +  +         L  L+L+ NQ +  + +   +L  L VL++  N L  
Sbjct: 58  TQLNLDRAE-LTKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT- 113

Query: 276 GTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGM 335
                              LP         +   Y+ GN++  +    +     L  L +
Sbjct: 114 ------------------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155

Query: 336 QSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSN 386
            +N L      ++  L+NL  L L  N L+ +IP        L    L  N
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.3 bits (159), Expect = 6e-12
 Identities = 51/319 (15%), Positives = 82/319 (25%), Gaps = 58/319 (18%)

Query: 59  GNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSR---CSELTHL 115
           G  S    +   D         +I     L++L +        I     R    S L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 116 RVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQ-LPDFVGNLS-----ALQVIYIRGNS 169
            + N ++ G  P  +          L   N++      ++  L       L+V+ I    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 170 LGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI 229
                   + +   L  L++++N          +L       L  L           G  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 230 PDSLSNASNLELLELAGNQFEGKV-SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLT 288
               +    L+ L+L+ N       +        L  LNL    L             + 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-----------KQVP 269

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
                 LP                                 L  L +  N+L    P   
Sbjct: 270 KG----LPA-------------------------------KLSVLDLSYNRLD-RNPS-P 292

Query: 349 GELKNLQILSLFGNFLHGS 367
            EL  +  LSL GN    S
Sbjct: 293 DELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.9 bits (145), Expect = 4e-10
 Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 13/183 (7%)

Query: 20  NNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIP 79
            +      W+          +  L ++           V     L  ++LSDN   GE  
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 80  QEI----GNLYRLEKLELSNN---SFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGS 132
                       L+ L L N    + SG      +   +L  L +++N L          
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 133 LL-KLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNE 191
              +L +L L +  L  Q+P   G  + L V+ +  N L    P+    L  +  L++  
Sbjct: 251 WPSQLNSLNLSFTGLK-QVPK--GLPAKLSVLDLSYNRLDR-NPSPDE-LPQVGNLSLKG 305

Query: 192 NQF 194
           N F
Sbjct: 306 NPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.1 bits (143), Expect = 7e-10
 Identities = 43/246 (17%), Positives = 75/246 (30%), Gaps = 44/246 (17%)

Query: 39  RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF 98
            + EL L N  + G   P +   +                         L  L L N S+
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGP----------------------DLNILNLRNVSW 133

Query: 99  SG--TIPTNLSRCSE--LTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLP--- 151
           +        L +  +  L  L +A         +++     L TL L  N   G+     
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

Query: 152 -DFVGNLSALQVIYIRGN---SLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207
                    LQV+ +R     +  G           L  L+++ N          +    
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS------LRDAAGAP 247

Query: 208 ILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLN 267
                  L  L ++       +P  L   + L +L+L+ N+ +   S D   L  +  L+
Sbjct: 248 SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPSPDE--LPQVGNLS 302

Query: 268 LERNNL 273
           L+ N  
Sbjct: 303 LKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 43/265 (16%), Positives = 65/265 (24%), Gaps = 36/265 (13%)

Query: 203 SLPFDILVNLPNLKKLCIAENNFVGSIPDSLS---NASNLELLELAGNQFEGKVSIDFSS 259
              F  ++   +LK+L +        I          S L+ L L   +  G        
Sbjct: 58  LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117

Query: 260 LKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGI 319
                +  L   N+            +L        P         +    I     L  
Sbjct: 118 ATGPDLNILNLRNVSW-----ATRDAWLAELQQWLKPG--------LKVLSIAQAHSLNF 164

Query: 320 IHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLA 379
               +R    L  L +  N   G                     +    P     L  LA
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERG-----------------LISALCPLKFPTLQVLA 207

Query: 380 NLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNG 439
                  +  G           L G D SH +L  A         +    L+LS   L  
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 440 SLLLQVGNLKNLILLDISGNQFSGV 464
              +  G    L +LD+S N+    
Sbjct: 268 ---VPKGLPAKLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 48/262 (18%), Positives = 77/262 (29%), Gaps = 26/262 (9%)

Query: 224 NFVGSIPD--SLSNASNLELLELAGNQFEGKVSI--------DFSSLKNLAVLNLERNNL 273
           NF    PD  S  N      +EL G     +  +               +  L+L+R  +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 274 GIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIAL 333
                        L       L         T+ +  + G     ++     +L  L   
Sbjct: 76  RAARIPSRILFGALRVLGISGL------QELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 334 GMQSNQLHGTIPDVIGELK-NLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNI 392
            +        + ++   LK  L++LS+            +     L+ L+LS N   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 393 PLSVGNC-------QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSL-LLQ 444
            L    C       Q L   +A   T +G       +   L   LDLSHN L  +     
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ-GLDLSHNSLRDAAGAPS 248

Query: 445 VGNLKNLILLDISGNQFSGVIP 466
                 L  L++S      V  
Sbjct: 249 CDWPSQLNSLNLSFTGLKQVPK 270

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 5/127 (3%)

Query: 351 LKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQ--NLIGFDAS 408
           LK L + +             +  ++ L  L L +  + G  P  +      +L   +  
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 409 HITLTG--ALPQQLLSITTLSL-YLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVI 465
           +++     A   +L       L  L ++          QV     L  LD+S N   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 466 PVTLSIC 472
            +  ++C
Sbjct: 190 GLISALC 196

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 53/357 (14%), Positives = 114/357 (31%), Gaps = 76/357 (21%)

Query: 136 LQTLALYYNNLTGQ----LPDFVGNLSALQVIYIRGNSLGGK----IPTTLGLLRNLVYL 187
           ++  +L  + +T +    +   +    +++ I + GN++G +    +   +   ++L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 188 NVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGN 247
             ++        F+G +  +I   L                +  +L     L  + L+ N
Sbjct: 66  EFSDI-------FTGRVKDEIPEAL--------------RLLLQALLKCPKLHTVRLSDN 104

Query: 248 QFEGKVSIDFSSL----KNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLS 303
            F                 L  L L  N LG      +     L   +  K     A  +
Sbjct: 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQELAVNK----KAKNA 158

Query: 304 STMTHFYIGGNQI--LGIIHFG--IRNLVNLIALGMQSNQLH-----GTIPDVIGELKNL 354
             +     G N++    +  +    ++   L  + M  N +        + + +   + L
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 355 QILSLFGNFLHG----SIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHI 410
           ++L L  N        ++  +L +   L  L L+   L                      
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS----------------ARGAA 262

Query: 411 TLTGALPQQLLSITTLSLYLDLSHNLLN---GSLLLQV--GNLKNLILLDISGNQFS 462
            +  A     L    L   L L +N +       L  V    + +L+ L+++GN+FS
Sbjct: 263 AVVDAF--SKLENIGL-QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 53/298 (17%), Positives = 96/298 (32%), Gaps = 56/298 (18%)

Query: 36  RHQRVTELDLSNQRIG----------GVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNL 85
             + +   + S+   G           +L   +     L  + LSDN F     + + + 
Sbjct: 58  SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117

Query: 86  ----YRLEKLELSNNSFS-------------GTIPTNLSRCSELTHLRVANNKLEGQIPK 128
                 LE L L NN                  +         L  +    N+LE    K
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 129 EIGSLLK----LQTLALYYNNLTGQ-----LPDFVGNLSALQVIYIRGNSLGGK----IP 175
           E     +    L T+ +  N +  +     L + +     L+V+ ++ N+        + 
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237

Query: 176 TTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPN--LKKLCIAENNF----VGSI 229
             L    NL  L +N+     +S+   +   D    L N  L+ L +  N      V ++
Sbjct: 238 IALKSWPNLRELGLNDCL---LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294

Query: 230 PDSL-SNASNLELLELAGNQF--EGKVSID----FSSLKNLAVLNLERNNLGIGTAND 280
              +     +L  LEL GN+F  E  V  +    FS+     +  L+          +
Sbjct: 295 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEE 352

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 52/326 (15%), Positives = 92/326 (28%), Gaps = 65/326 (19%)

Query: 40  VTELDLSNQRIGGV----LSPYVGNLSFLRYINLSDNGFHGE----IPQEIGNLYRLEKL 91
           +    L    I       +   +     ++ I LS N    E    + + I +   LE  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 92  ELSNNSFS----------GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLK----LQ 137
           E S+                +   L +C +L  +R+++N       + +   L     L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 138 TLALYYNNLT-------------GQLPDFVGNLSALQVIYIRGNSLGGK----IPTTLGL 180
            L L+ N L                +     N   L+ I    N L          T   
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 181 LRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNF----VGSIPDSLSNA 236
            R L  + + +N           L  + L     LK L + +N F      ++  +L + 
Sbjct: 186 HRLLHTVKMVQNGIRPEG--IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 237 SNLELLELAGNQFEGKVSIDFSSL------KNLAVLNLERNNLGIGTANDLGFVTFLTNC 290
            NL  L L       + +              L  L L+ N + +     L         
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK-------- 295

Query: 291 SSLKLPHSIANLSSTMTHFYIGGNQI 316
                   I      +    + GN+ 
Sbjct: 296 ------TVIDEKMPDLLFLELNGNRF 315

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 19/179 (10%)

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEI--GSLLKLQTLALYYNNLTGQLPDFV-GNL 157
            +P +L   S    L +++N L  ++  E     L  L +L L +N+L   +       +
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK 217
             L+ + +  N L          L+ L  L +  N           +  +   ++  L+K
Sbjct: 88  PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-------VVDRNAFEDMAQLQK 140

Query: 218 LCIAENNFVGSIP----DSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNN 272
           L +   N +   P       +    L LL+L+ N+ +     D   L       L  +N
Sbjct: 141 LYL-SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 27/167 (16%)

Query: 228 SIPDSLSNASNLELLELAGNQFEG-KVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTF 286
           ++P SL   S   LL+L+ N     +     + L NL  L L  N+L             
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL------------- 76

Query: 287 LTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD 346
               + +    +   + + + +  +  N +  +  F   +L  L  L + +N +     +
Sbjct: 77  ----NFIS-SEAFVPVPN-LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN 130

Query: 347 VIGELKNLQILSLFGNFLHGSIP----SSLGNLTKLANLELSSNSLQ 389
              ++  LQ L L  N +    P         L KL  L+LSSN L+
Sbjct: 131 AFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 11/139 (7%)

Query: 35  HRHQRVTELDLSNQRIGGVLSPYV-GNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLE 92
            R   +  L LS+  +   +S      +  LRY++LS N  H  + + +  +L  LE L 
Sbjct: 61  TRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLL 118

Query: 93  LSNNSFSGTIPTN-LSRCSELTHLRVANNKLEGQIPKEI----GSLLKLQTLALYYNNLT 147
           L NN     +  N     ++L  L ++ N++  + P E+      L KL  L L  N L 
Sbjct: 119 LYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

Query: 148 GQLPDFVGNLSALQVIYIR 166
                 +  L A     + 
Sbjct: 177 KLPLTDLQKLPAWVKNGLY 195

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 43/236 (18%), Positives = 74/236 (31%), Gaps = 39/236 (16%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNNSF 98
              L L    +  + S    NL  +  I +S +    ++      NL ++  +E+ N   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 99  SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD--FVGN 156
              I  +      L  L                    L+ L ++   L    PD   V +
Sbjct: 93  LTYIDPDA-----LKELP------------------LLKFLGIFNTGLK-MFPDLTKVYS 128

Query: 157 LSALQVIYIRGNSLGGKIPTTL--GLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPN 214
                ++ I  N     IP     GL    + L +  N F  V  ++         N   
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA--------FNGTK 180

Query: 215 LKKLCIAENNFVGSIP-DSLSNA-SNLELLELAGNQFEGKVSIDFSSLKNLAVLNL 268
           L  + + +N ++  I  D+     S   LL+++        S     LK L   N 
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 22/237 (9%)

Query: 108 RCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRG 167
            C +    RV    ++ +IP         QTL L   +L         NL  +  IY+  
Sbjct: 9   ECHQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI 64

Query: 168 NSLGGKIPT-TLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFV 226
           +    ++ + +   L  + ++ +   +          +  D L  LP LK L I  N  +
Sbjct: 65  DVTLQQLESHSFYNLSKVTHIEIRNTRN------LTYIDPDALKELPLLKFLGIF-NTGL 117

Query: 227 GSIPD--SLSNASNLELLELAGNQFEGKVSID-FSSLKN-LAVLNLERNNL---GIGTAN 279
              PD   + +     +LE+  N +   + ++ F  L N    L L  N          N
Sbjct: 118 KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177

Query: 280 DLGFVT-FLTNCSSLKL--PHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIAL 333
                  +L     L +    +   + S  +   +    +  +   G+ +L  LIA 
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 32/193 (16%), Positives = 71/193 (36%), Gaps = 15/193 (7%)

Query: 88  LEKLELSNNSFSGTIPTN-LSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNN 145
            + L+L       TIP++  S    ++ + V+ +    Q+      +L K+  + +    
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 146 LTGQLPDFV-GNLSALQVIYIRGNSLGGKIP--TTLGLLRNLVYLNVNENQFWYVSSFSG 202
               +       L  L+ + I    L    P  T +        L + +N       +  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDN------PYMT 144

Query: 203 SLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSLK 261
           S+P +    L N        NN   S+     N + L+ + L  N++   +  D F  + 
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 262 N-LAVLNLERNNL 273
           +  ++L++ + ++
Sbjct: 205 SGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 33/211 (15%), Positives = 61/211 (28%), Gaps = 52/211 (24%)

Query: 179 GLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIP-DSLSNAS 237
            L  +   L + E           ++P     NLPN+ ++ ++ +  +  +   S  N S
Sbjct: 28  SLPPSTQTLKLIETHL-------RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS 80

Query: 238 NLELLELAGNQFEGKVSID-FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLP 296
            +  +E+   +    +  D    L  L  L +    L          +T + +     + 
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-----KMFPDLTKVYSTDIFFI- 134

Query: 297 HSIANLSSTMTHFYIGGNQILGIIHFGI-RNLVNLIALGMQSNQLHGTIPDVIGELKNLQ 355
                         I  N  +  I     + L N                          
Sbjct: 135 ------------LEITDNPYMTSIPVNAFQGLCNE-----------------------TL 159

Query: 356 ILSLFGNFLHGSIPSSLGNLTKLANLELSSN 386
            L L+ N    S+     N TKL  + L+ N
Sbjct: 160 TLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 41/204 (20%), Positives = 77/204 (37%), Gaps = 22/204 (10%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
             + +L  Q +  ++S     LS ++  N  ++    +    +     L++L LS+N  S
Sbjct: 21  AVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQIS 76

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSA 159
               + L   ++L  L V  N+L+            L  L L  N L     D + +L  
Sbjct: 77  DL--SPLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRD--TDSLIHLKN 129

Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
           L+++ IR N L  K    LG L  L  L+++ N+   +++  G      L  L  +  + 
Sbjct: 130 LEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNE---ITNTGG------LTRLKKVNWID 178

Query: 220 IAENNFVGSIPDSLSNASNLELLE 243
           +     V               ++
Sbjct: 179 LTGQKCVNEPVKYQPELYITNTVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 22/192 (11%)

Query: 82  IGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLAL 141
              L    K  L   S   T   +    S + +    N+ ++      +     L+ L L
Sbjct: 15  DPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHL 70

Query: 142 YYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFS 201
            +N ++      + +L+ L+ + +  N L  K    +     L  L ++ N+     S  
Sbjct: 71  SHNQISD--LSPLKDLTKLEELSVNRNRL--KNLNGIPSA-CLSRLFLDNNELRDTDSLI 125

Query: 202 GSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLK 261
                    +L NL+ L I  N  + SI   L   S LE+L+L GN+      +  + LK
Sbjct: 126 ---------HLKNLEILSIRNNK-LKSI-VMLGFLSKLEVLDLHGNEITNTGGL--TRLK 172

Query: 262 NLAVLNLERNNL 273
            +  ++L     
Sbjct: 173 KVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 37/240 (15%), Positives = 77/240 (32%), Gaps = 41/240 (17%)

Query: 156 NLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNL 215
            L+      +   S+      +   L  +   N + +    + S +G      +    NL
Sbjct: 17  GLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSN---IQSLAG------MQFFTNL 65

Query: 216 KKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGI 275
           K+L ++ N  +  +   L + + LE L +  N+ +   +++      L+ L L+ N L  
Sbjct: 66  KELHLSHNQ-ISDL-SPLKDLTKLEELSVNRNRLK---NLNGIPSACLSRLFLDNNELRD 120

Query: 276 GTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGM 335
                      L +  +L                 I  N++  I+   +  L  L  L +
Sbjct: 121 --------TDSLIHLKNL-------------EILSIRNNKLKSIV--MLGFLSKLEVLDL 157

Query: 336 QSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLS 395
             N++  T    +  LK +  + L G             L     ++           +S
Sbjct: 158 HGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 41/263 (15%), Positives = 87/263 (33%), Gaps = 45/263 (17%)

Query: 130 IGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV 189
              L       L   ++T  +      LS +Q      +++  +    +    NL  L++
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHL 70

Query: 190 NENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQF 249
           + NQ   +S  S       L +L  L++L +  N  + ++  +   ++ L  L L  N+ 
Sbjct: 71  SHNQ---ISDLSP------LKDLTKLEELSVNRNR-LKNL--NGIPSACLSRLFLDNNEL 118

Query: 250 EGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHF 309
                     LKNL +L++  N L       +  + FL+                 +   
Sbjct: 119 R-DTD-SLIHLKNLEILSIRNNKL-----KSIVMLGFLSK----------------LEVL 155

Query: 310 YIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSI- 368
            + GN+I      G+  L  +  + +   +    + + +     L I +   +     I 
Sbjct: 156 DLHGNEITNTG--GLTRLKKVNWIDLTGQKC---VNEPVKYQPELYITNTVKDPDGRWIS 210

Query: 369 PSSLGNLTKLANLELSSNSLQGN 391
           P  + N     +  +        
Sbjct: 211 PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 47/209 (22%)

Query: 258 SSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPH----SIANLSS--TMTHFYI 311
             L N    NL + ++      DL     L+   +    +    S+A +     +   ++
Sbjct: 16  PGLANAVKQNLGKQSV-----TDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHL 70

Query: 312 GGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSS 371
             NQI  +    +++L  L  L +  N+L             L  L L  N L      S
Sbjct: 71  SHNQISDLS--PLKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNEL--RDTDS 123

Query: 372 LGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLD 431
           L +L  L  L + +N L+  + L       L                           LD
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVMLG--FLSKLE-------------------------VLD 156

Query: 432 LSHNLLNGSLLLQVGNLKNLILLDISGNQ 460
           L  N +  +    +  LK +  +D++G +
Sbjct: 157 LHGNEI--TNTGGLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 14/162 (8%)

Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366
               +G   +  ++    + L  +      ++ +       +    NL+ L L  N +  
Sbjct: 22  VKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQI-- 75

Query: 367 SIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTL 426
           S  S L +LTKL  L ++ N L+    L+      L      +  L       L+ +  L
Sbjct: 76  SDLSPLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRDTDS--LIHLKNL 130

Query: 427 SLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVT 468
              L + +N L    ++ +G L  L +LD+ GN+ +    +T
Sbjct: 131 E-ILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNTGGLT 169

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 27/174 (15%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
           +C    L     NL  T+T   +  N I  I          L  + + +NQ+    PD  
Sbjct: 17  DCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76

Query: 349 GELKNLQILSLFGNFLHGSIPSSL-GNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDA 407
             L++L  L L+GN +   +P SL   L  L  L L++N +   + +          F  
Sbjct: 77  QGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDA--------FQ- 125

Query: 408 SHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQF 461
                       L ++  LSLY +    +  G+       L+ +  + ++ N F
Sbjct: 126 -----------DLHNLNLLSLYDNKLQTIAKGTF----SPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 9/150 (6%)

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160
            IPTNL     +T +R+  N ++   P       KL+ + L  N ++   PD    L +L
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 161 QVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCI 220
             + + GN +     +    L +L  L +N N+          L  D   +L NL  L +
Sbjct: 83  NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-------CLRVDAFQDLHNLNLLSL 135

Query: 221 AENNFVGSIPDSLSNASNLELLELAGNQFE 250
            +N        + S    ++ + LA N F 
Sbjct: 136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 11/137 (8%)

Query: 137 QTLALYYNNLTGQLPDFV-GNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195
             + L  N +   +P         L+ I +  N +    P     LR+L  L +  N+  
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI- 92

Query: 196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIP-DSLSNASNLELLELAGNQFEGKVS 254
                   LP  +   L +L+ L +  N  +  +  D+  +  NL LL L  N+ +    
Sbjct: 93  ------TELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

Query: 255 IDFSSLKNLAVLNLERN 271
             FS L+ +  ++L +N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNNSF 98
           +TE+ L    I  +          LR I+LS+N    E+  +    L  L  L L  N  
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 99  SGTIPTNL-SRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQLPDFVGN 156
           +  +P +L      L  L +  NK+   +  +    L  L  L+LY N L          
Sbjct: 93  T-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 157 LSALQVIYIRGN 168
           L A+Q +++  N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 43/157 (27%)

Query: 230 PDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTN 289
           P + S    L  ++L+ NQ        F  L++L  L L  N +                
Sbjct: 49  PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT--------------- 93

Query: 290 CSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIG 349
               +LP S+         F                 L +L  L + +N+++    D   
Sbjct: 94  ----ELPKSL---------F---------------EGLFSLQLLLLNANKINCLRVDAFQ 125

Query: 350 ELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSN 386
           +L NL +LSL+ N L      +   L  +  + L+ N
Sbjct: 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 83/518 (16%), Positives = 143/518 (27%), Gaps = 185/518 (35%)

Query: 35  HRHQ---RVTELDLSNQRIGGVLSP-YVGNLS------FLRYINLSDNGFHGEI---PQE 81
           H H       E     + I  V    +V N          + I LS       I      
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LSKEEID-HIIMSKDA 60

Query: 82  IGNLYRL-EKLELSNNS----FSGTI------------------PTNLSRCSELTHLRVA 118
           +    RL   L          F   +                  P+ ++R       R+ 
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 119 NN-----KLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLG-G 172
           N+     K      +     LKL+  AL               L   + + I G  LG G
Sbjct: 121 NDNQVFAKYNVSRLQPY---LKLRQ-ALL-------------ELRPAKNVLIDG-VLGSG 162

Query: 173 KIPTTLGL--LRNLVYLNVNENQ-FWYVSSFSGSLPFDILVNLPNL-----KKLCIAENN 224
           K  T + L    +       + + FW ++  + + P  +L  L  L          + ++
Sbjct: 163 K--TWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWT-SRSD 218

Query: 225 FVGSIPDS-----------------------LSNASNLELLELAGNQFEGKVSI------ 255
              +I                          L N  N +        F     I      
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA----FNLSCKILLTTRF 274

Query: 256 ----DFSSLKNLAVLNLERNNLGIGTANDLG-FVTFLTNCSSLKLPHSIANLSSTMTHFY 310
               DF S      ++L+ +++ +         + +L +C    LP              
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPR------------- 320

Query: 311 IGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGE-LKNLQILSLFGNFLHGSIP 369
               ++L           N   L +            I E +++   L+ + N+ H    
Sbjct: 321 ----EVLTT---------NPRRLSI------------IAESIRDG--LATWDNWKH---- 349

Query: 370 SSLGNLTKLAN-LELSSNSLQGNIPLSVGNC-QNLIGF-DASHITLTGALPQQLLSITTL 426
               N  KL   +E S N L+   P         L  F  ++HI      P  LLS+   
Sbjct: 350 ---VNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPSAHI------PTILLSL--- 394

Query: 427 SLYLDLS--------HNLLNGSLLLQVGNLKNLILLDI 456
            ++ D+         + L   SL+ +      + +  I
Sbjct: 395 -IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 46/157 (29%), Positives = 63/157 (40%), Gaps = 15/157 (9%)

Query: 240 ELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL------ 293
           E L+L            F  L  L  LNL+ N L        G    LT   +L      
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL---QTLSAGVFDDLTELGTLGLANNQ 94

Query: 294 --KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD-VIGE 350
              LP  + +  + +   Y+GGNQ+  +       L  L  L + +NQL  +IP     +
Sbjct: 95  LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153

Query: 351 LKNLQILSLFGNFLHGSIP-SSLGNLTKLANLELSSN 386
           L NLQ LSL  N L  S+P  +   L KL  + L  N
Sbjct: 154 LTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 23/169 (13%)

Query: 89  EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG 148
           EKL+L +   +          ++LT L +  N+L+         L +L TL L  N L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 149 QLPDFV-GNLSALQVIYIRGNSLGGKIPTTLGL---LRNLVYLNVNENQFWYVSSFSGSL 204
            LP  V  +L+ L  +Y+ GN L   +P+  G+   L  L  L +N NQ         S+
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQL-KSLPS--GVFDRLTKLKELRLNTNQL-------QSI 146

Query: 205 P---FDILVNLPNLKKLCIAENNFVGSIPD-SLSNASNLELLELAGNQF 249
           P   FD L NL  L        N + S+P  +      L+ + L GNQF
Sbjct: 147 PAGAFDKLTNLQTLS----LSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
           +C    L    + + +      +    +  +     R L  L  L +  NQL      V 
Sbjct: 20  DCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79

Query: 349 GELKNLQILSLFGNFLHGSIPSSL-GNLTKLANLELSSNSLQ 389
            +L  L  L L  N L  S+P  +  +LT+L  L L  N L+
Sbjct: 80  DDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK 120

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 50/189 (26%), Positives = 74/189 (39%), Gaps = 21/189 (11%)

Query: 89  EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG 148
            K  L   S +  +  N    + +  +   N+ +  +  + I  L  ++ LAL  N L  
Sbjct: 22  IKANLKKKSVTDAVTQN--ELNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLH- 76

Query: 149 QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDI 208
            +      L+ L  + + GN L          L NL  L + ENQ         SLP  +
Sbjct: 77  DISAL-KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-------QSLPDGV 128

Query: 209 LVNLPNLKKLCIAENNFVGSIP----DSLSNASNLELLELAGNQFEGKVSIDFSSLKNLA 264
              L NL  L +A N    S+P    D L   +NL  L+L+ NQ +      F  L  L 
Sbjct: 129 FDKLTNLTYLNLAHNQLQ-SLPKGVFDKL---TNLTELDLSYNQLQSLPEGVFDKLTQLK 184

Query: 265 VLNLERNNL 273
            L L +N L
Sbjct: 185 DLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 47/209 (22%), Positives = 75/209 (35%), Gaps = 42/209 (20%)

Query: 186 YLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELA 245
             N+ +       + +     D ++          A N+ + S+   +    N+  L L 
Sbjct: 23  KANLKKKSVTDAVTQNELNSIDQII----------ANNSDIKSVQ-GIQYLPNVRYLALG 71

Query: 246 GNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSST 305
           GN+    +S     L NL  L L  N L                     LP+ + +  + 
Sbjct: 72  GNKLH-DISA-LKELTNLTYLILTGNQLQ-------------------SLPNGVFDKLTN 110

Query: 306 MTHFYIGGNQI----LGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFG 361
           +    +  NQ+     G+       L NL  L +  NQL      V  +L NL  L L  
Sbjct: 111 LKELVLVENQLQSLPDGVFD----KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166

Query: 362 NFLHGSIPSSL-GNLTKLANLELSSNSLQ 389
           N L  S+P  +   LT+L +L L  N L+
Sbjct: 167 NQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGI-RNLVNLIALGMQSNQLHGTIPDV 347
           +CS+ KL     ++        +  N+   +   GI + L  L  +   +N++       
Sbjct: 17  DCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76

Query: 348 IGELKNLQILSLFGNFLHGSIPSSL-GNLTKLANLELSSNSLQ 389
                 +  + L  N L  ++   +   L  L  L L SN + 
Sbjct: 77  FEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 31/156 (19%), Positives = 61/156 (39%), Gaps = 16/156 (10%)

Query: 26  CQWMGVTCGHR---------HQRVTELDLSNQRIGGVLSPYV-GNLSFLRYINLSDNGFH 75
           C+   V C ++          Q   EL L+N     + +  +   L  LR IN S+N   
Sbjct: 11  CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT 70

Query: 76  GEIPQEI-GNLYRLEKLELSNNSFSGTIPTNL-SRCSELTHLRVANNKLEGQIPKEI-GS 132
            +I +        + ++ L++N     +   +      L  L + +N++   +  +    
Sbjct: 71  -DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIG 127

Query: 133 LLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGN 168
           L  ++ L+LY N +T   P     L +L  + +  N
Sbjct: 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 26/162 (16%)

Query: 228 SIPDSLSNASNLELLELAGNQFEG-KVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTF 286
            IP+ +        L L  N+F   + +  F  L  L  +N   N +             
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT------------ 70

Query: 287 LTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGI-RNLVNLIALGMQSNQLHGTIP 345
                   +       +S +    +  N++  +    + + L +L  L ++SN++     
Sbjct: 71  -------DIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTLMLRSNRITCVGN 122

Query: 346 DVIGELKNLQILSLFGNFLHGSIP-SSLGNLTKLANLELSSN 386
           D    L ++++LSL+ N +  ++   +   L  L+ L L +N
Sbjct: 123 DSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQLPDFV-GNLS 158
            IP ++        LR+ NN+        I   L +L+ +    N +T  + +      S
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81

Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL 218
            +  I +  N L          L +L  L +  N+          +  D  + L +++ L
Sbjct: 82  GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-------CVGNDSFIGLSSVRLL 134

Query: 219 CIAENNFVGSIPD-SLSNASNLELLELAGNQF 249
            +  +N + ++   +     +L  L L  N F
Sbjct: 135 SL-YDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
           +C S +     A + +     Y+  NQI  +      +L+NL  L + SNQL      V 
Sbjct: 25  DCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF 84

Query: 349 GELKNLQILSLFGNFLHGSIPSSL-GNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDA 407
             L  L +L L  N L   +PS++   L  L  L +  N L   +P  +    +L     
Sbjct: 85  DSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142

Query: 408 SHITLT----GALPQQLLSITTLSLY 429
               L     GA   +L S+T   L+
Sbjct: 143 DQNQLKSIPHGAF-DRLSSLTHAYLF 167

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 40/154 (25%), Positives = 58/154 (37%), Gaps = 28/154 (18%)

Query: 237 SNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLP 296
           +N ++L L  NQ        F SL NL  L L  N LG                    LP
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-------------------ALP 80

Query: 297 HSIANLSSTMTHFYIGGNQI----LGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELK 352
             + +  + +T   +G NQ+      +       LV+L  L M  N+L   +P  I  L 
Sbjct: 81  VGVFDSLTQLTVLDLGTNQLTVLPSAVFD----RLVHLKELFMCCNKLT-ELPRGIERLT 135

Query: 353 NLQILSLFGNFLHGSIPSSLGNLTKLANLELSSN 386
           +L  L+L  N L      +   L+ L +  L  N
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 24/143 (16%)

Query: 137 QTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTL--GL---LRNLVYLNVNE 191
           Q L L+ N +T   P    +L  L+ +Y+  N L       L  G+   L  L  L++  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-----GALPVGVFDSLTQLTVLDLGT 97

Query: 192 NQFWYVSSFSGSLP---FDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ 248
           NQ          LP   FD LV+L  L  +C    N +  +P  +   ++L  L L  NQ
Sbjct: 98  NQL-------TVLPSAVFDRLVHLKELF-MC---CNKLTELPRGIERLTHLTHLALDQNQ 146

Query: 249 FEGKVSIDFSSLKNLAVLNLERN 271
            +      F  L +L    L  N
Sbjct: 147 LKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 9/126 (7%)

Query: 89  EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLT 147
           + L L +N  +   P        L  L + +N+L   +P  +  SL +L  L L  N LT
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 148 GQLPDFV-GNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF 206
             LP  V   L  L+ +++  N L  ++P  +  L +L +L +++NQ   +   +    F
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGA----F 155

Query: 207 DILVNL 212
           D L +L
Sbjct: 156 DRLSSL 161

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 77  EIPQEIGNLYRLEKLELSNNSFSGTIPTN-LSRCSELTHLRVANNKLEGQIPKEIGSLL- 134
           +    +     L +L + N      +    L    EL +L +  + L   +  +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 135 KLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSL 170
           +L  L L +N L       V  LS LQ + + GN L
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 10/120 (8%)

Query: 108 RCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFV-GNLSALQVIYIR 166
                + LR   +         +     L  L +        L       L  L+ + I 
Sbjct: 6   CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 167 GNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFV 226
            + L    P        L  LN++ N          SL +  +  L  L++L ++ N   
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALE-------SLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 288 TNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFG-IRNLVNLIALGMQSNQLHGTIPD 346
           T   +L   H +    +  T  YI   Q L  +    +R L  L  L +  + L    PD
Sbjct: 16  TRDGALDSLHHLPGAENL-TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 347 VIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ 389
                  L  L+L  N L  S+         L  L LS N L 
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 209 LVNLPNLKKLCIAENNFVGSIPD-SLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLN 267
           L    NL +L I     +  +    L     L  L +  +         F     L+ LN
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 268 LERNNL 273
           L  N L
Sbjct: 87  LSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 60  NLSFLRYINLSDNGFHGEIPQE-IGNLYRLEKLELSNNSFSGTIPTN-LSRCSELTHLRV 117
               L  + + +      +    +  L  L  L +  +     +  +       L+ L +
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNL 87

Query: 118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLT 147
           + N LE  +  +    L LQ L L  N L 
Sbjct: 88  SFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 39  RVTELDLSNQRIGGVLSPYV-GNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNN 96
            +TEL + NQ+    L       L  LR + +  +G    +  +      RL +L LS N
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFN 90

Query: 97  SFSGTIPTNLSRCSELTHLRVANNKL 122
           +   ++     +   L  L ++ N L
Sbjct: 91  ALE-SLSWKTVQGLSLQELVLSGNPL 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGI-RNLVNLIALGMQSNQLHGTIPDV 347
           +C+   L     ++    T   +  N++  I   G+   L +L+ L ++ NQL G  P+ 
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73

Query: 348 IGELKNLQILSLFGNFLHGSIPSSL-GNLTKLANLELSSNSLQ 389
                ++Q L L  N +   I + +   L +L  L L  N + 
Sbjct: 74  FEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS 115

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 14/136 (10%)

Query: 88  LEKLELSNNSFS-GTIPTNLSRCSELTHLRVANN---KLEGQIPKEIGSLLKLQTLALYY 143
           +++L L N+  + G +        EL  L   N     +       +  L KL+ L L  
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKLELSD 73

Query: 144 NNLTGQLPDFVGNLSALQVIYIRGNSLGG-KIPTTLGLLRNLVYLNVNENQFWYVSSFSG 202
           N ++G L         L  + + GN +        L  L NL  L++   +   V++ + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE---VTNLND 130

Query: 203 SLPFDILVNLPNLKKL 218
                +   LP L  L
Sbjct: 131 YREN-VFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 156 NLSALQVIYIRGNSLG-GKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPN 214
             S ++ + +  +    GK+         L +L+        +++            L  
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP---------KLNK 65

Query: 215 LKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSLKNLAVLNLERN 271
           LKKL +++N   G +        NL  L L+GN+ +   +I+    L+NL  L+L   
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 40  VTELDLSNQRIG-GVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNL---YRLEKLELSN 95
           V EL L N R   G L         L +++  + G        I NL    +L+KLELS+
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNKLKKLELSD 73

Query: 96  NSFSGTIPTNLSRCSELTHLRVANNKLEG-QIPKEIGSLLKLQTLALYYNNLT 147
           N  SG +     +C  LTHL ++ NK++     + +  L  L++L L+   +T
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 207 DILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVL 266
            +      L+ L    N  + SI + L   + L+ LEL+ N+  G + +      NL  L
Sbjct: 36  GLTDEFEELEFLSTI-NVGLTSIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93

Query: 267 NLERNNLGIGTANDLGFVTFLTNCSSLK 294
           NL  N +      DL  +  L    +LK
Sbjct: 94  NLSGNKI-----KDLSTIEPLKKLENLK 116

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
            C S         + +  T+  +  N +  + +     L +L  L +  N+L      V 
Sbjct: 13  ECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF 72

Query: 349 GELKNLQILSLFGNFLHGSIPSSL-GNLTKLANLELSSNSLQ 389
            +L +L  L+L  N L  S+P+ +   LT+L  L L++N LQ
Sbjct: 73  NKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ 113

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 31/153 (20%)

Query: 240 ELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSI 299
             L+L  N  +   +  F  L +L  L L  N L                     LP+ +
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-------------------SLPNGV 71

Query: 300 ANLSSTMTHFYIGGNQI----LGIIHFGIRNLVNLIALGMQSNQLHGTIPD-VIGELKNL 354
            N  +++T+  +  NQ+     G+       L  L  L + +NQL  ++PD V  +L  L
Sbjct: 72  FNKLTSLTYLNLSTNQLQSLPNGVFD----KLTQLKELALNTNQLQ-SLPDGVFDKLTQL 126

Query: 355 QILSLFGNFLHGSIPS-SLGNLTKLANLELSSN 386
           + L L+ N L  S+P      LT L  + L  N
Sbjct: 127 KDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 10/101 (9%)

Query: 294 KLPHSIANLSSTMTHFYIGGNQI----LGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIG 349
            LP+ + +  +++T  Y+GGN++     G+ +     L +L  L + +NQL      V  
Sbjct: 42  SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN----KLTSLTYLNLSTNQLQSLPNGVFD 97

Query: 350 ELKNLQILSLFGNFLHGSIPSSL-GNLTKLANLELSSNSLQ 389
           +L  L+ L+L  N L  S+P  +   LT+L +L L  N L+
Sbjct: 98  KLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 17/152 (11%)

Query: 102 IPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQ 161
           +PT +   ++ T+L +  N L+         L  L  L L  N L          L++L 
Sbjct: 22  VPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79

Query: 162 VIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLP---FDILVNLPNLKKL 218
            + +  N L          L  L  L +N NQ         SLP   FD L  L +L+  
Sbjct: 80  YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL-------QSLPDGVFDKLTQLKDLR-- 130

Query: 219 CIAENNFVGSIPD-SLSNASNLELLELAGNQF 249
                N + S+PD      ++L+ + L  N +
Sbjct: 131 --LYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
            C+S  L      + S+ T   +  N++  + H     L  L  L +  NQ+      V 
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF 72

Query: 349 GELKNLQILSLFGNFLHGSIPSSL-GNLTKLANLELSSNSLQ 389
            +L  L IL L  N L  S+P+ +   LT+L  L L +N L+
Sbjct: 73  DKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLK 113

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 30/140 (21%), Positives = 48/140 (34%), Gaps = 14/140 (10%)

Query: 84  NLYRLEKLELSNNSFS-GTIPTNLSRCSELTHLRVANN---KLEGQIPKEIGSLLKLQTL 139
               + +L L N   + G I    +    L  L + N     +       +  L KL+ L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-----LPKLPKLKKL 76

Query: 140 ALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGG-KIPTTLGLLRNLVYLNVNENQFWYVS 198
            L  N + G L      L  L  + + GN L        L  L  L  L++   +   V+
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE---VT 133

Query: 199 SFSGSLPFDILVNLPNLKKL 218
           + +      +   LP L  L
Sbjct: 134 NLNDYRES-VFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 11/118 (9%)

Query: 156 NLSALQVIYIRGNSLG-GKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPN 214
             +A++ + +       GKI        NL +L++       VS+            LP 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP---------KLPK 72

Query: 215 LKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FSSLKNLAVLNLERN 271
           LKKL ++EN   G +        NL  L L+GN+ +   +++    L+ L  L+L   
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 38  QRVTELDLSNQRIG-GVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNL---YRLEKLEL 93
             V EL L N +   G +         L +++L + G        + NL    +L+KLEL
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-----ISVSNLPKLPKLKKLEL 78

Query: 94  SNNSFSGTIPTNLSRCSELTHLRVANNKLEG-QIPKEIGSLLKLQTLALYYNNLT 147
           S N   G +     +   LTHL ++ NKL+     + +  L  L++L L+   +T
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 207 DILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVL 266
            +     NL+ L +  N  + S+  +L     L+ LEL+ N+  G + +    L NL  L
Sbjct: 43  GLTAEFVNLEFLSLI-NVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100

Query: 267 NLERNNLGIGTANDLGFVTFLTNCSSLK 294
           NL  N L      D+  +  L     LK
Sbjct: 101 NLSGNKL-----KDISTLEPLKKLECLK 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 9/146 (6%)

Query: 77  EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKL 136
           ++   +  L   + L LS N+    I ++LS    L  L +  N ++ +I         L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 137 QTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGG-KIPTTLGLLRNLVYLNVNENQFW 195
           + L + YN +   L      L  L+V+Y+  N +        L  L  L  L +  N  +
Sbjct: 96  EELWISYNQIA-SLSGI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

Query: 196 YVSSFSGSLP---FDILVNLPNLKKL 218
                + +      +++  LPNLKKL
Sbjct: 154 NDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 16/147 (10%)

Query: 80  QEIGNLYRLEKLELSNNSFS-GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQT 138
           ++       EK+EL         +   LS      HL ++ N +E +I   +  +  L+ 
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRI 74

Query: 139 LALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGL--LRNLVYLNVNENQFWY 196
           L+L  N +  ++ +       L+ ++I  N    +I +  G+  L NL  L ++ N+   
Sbjct: 75  LSLGRNLIK-KIENLDAVADTLEELWISYN----QIASLSGIEKLVNLRVLYMSNNK--- 126

Query: 197 VSSFSGSLPFDILVNLPNLKKLCIAEN 223
           ++++      D L  L  L+ L +A N
Sbjct: 127 ITNWGE---IDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 17/122 (13%)

Query: 173 KIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDS 232
           K+  TL  L+   +L ++ N        S       L  + NL+ L +  N     I + 
Sbjct: 39  KMDATLSTLKACKHLALSTNNI---EKISS------LSGMENLRILSLGRNLIK-KIENL 88

Query: 233 LSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSS 292
            + A  LE L ++ NQ    +S     L NL VL +  N +      + G +  L     
Sbjct: 89  DAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKI-----TNWGEIDKLAALDK 141

Query: 293 LK 294
           L+
Sbjct: 142 LE 143

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 29/137 (21%)

Query: 229 IPDSLSNASNLELLELAGNQFEGKVSID-FSSLKNLAVLNLERNNLGIGTANDLGFVTFL 287
           +  +LS     + L L+ N  E    I   S ++NL +L+L RN               +
Sbjct: 40  MDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNL--------------I 82

Query: 288 TNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDV 347
               +L        ++ T+   +I  NQI  +   GI  LVNL  L M +N++     ++
Sbjct: 83  KKIENLD------AVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKI-TNWGEI 133

Query: 348 --IGELKNLQILSLFGN 362
             +  L  L+ L L GN
Sbjct: 134 DKLAALDKLEDLLLAGN 150

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 39  RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIP--QEIGNLYRLEKLELSNN 96
           R  ELDL   +I  V+      L     I+ SDN    EI        L RL+ L ++NN
Sbjct: 20  RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNN 74

Query: 97  SFSGTIPTNLSRCSELTHLRVANNKLEG-QIPKEIGSLLKLQTLALYYNNLT 147
                         +LT L + NN L        + SL  L  L +  N +T
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 14/143 (9%)

Query: 80  QEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN---KLEGQIPKEIGSLLKL 136
            +  N  R  +L+L        I    +   +   +  ++N   KL+G        L +L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG-----FPLLRRL 66

Query: 137 QTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGG-KIPTTLGLLRNLVYLNVNENQFW 195
           +TL +  N +          L  L  + +  NSL        L  L++L YL +  N   
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-- 124

Query: 196 YVSSFSGSLPFDILVNLPNLKKL 218
            V++      + ++  +P ++ L
Sbjct: 125 -VTNKKHYRLY-VIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 9/120 (7%)

Query: 104 TNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVI 163
              +       L +   K+   I     +L +   +    N +  +L  F   L  L+ +
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGF-PLLRRLKTL 69

Query: 164 YIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAEN 223
            +  N +          L +L  L +  N    +         D L +L +L  LCI  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNS---LVELGD---LDPLASLKSLTYLCILRN 123

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 68/464 (14%), Positives = 145/464 (31%), Gaps = 68/464 (14%)

Query: 35  HRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELS 94
            R   +  L L  +    +      NL    +             +   NL +L+ +   
Sbjct: 70  RRFPNLRSLKLKGKPRAAMF-----NLIPENWGGYVTPWVT----EISNNLRQLKSVHFR 120

Query: 95  NNSFS--GTIPTNLSRCSELTHLRVAN-NKLEGQIPKEIGSLLK-LQTLALYYNNLT--- 147
               S         +R  +L  L++   +         I +  + ++TL +  ++ +   
Sbjct: 121 RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180

Query: 148 -GQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLL----RNLVYLNVNENQFWYVSSFSG 202
              L +   + ++L+V+           P  L  +    R+LV + V + +   +  F  
Sbjct: 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-- 238

Query: 203 SLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID--FSSL 260
                      NL++ C    N    +P+   N      L   G  + G   +   F   
Sbjct: 239 ------FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292

Query: 261 KNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGII 320
             +  L+L    L           T +  C +L+    +    + +       ++ L ++
Sbjct: 293 AQIRKLDLLYALL-----ETEDHCTLIQKCPNLE----VLETRNVIG------DRGLEVL 337

Query: 321 HFGIRNLVNLIALGMQSNQLHGTIPDVIGE---------LKNLQILSLFGNFL--HG--S 367
               + L  L        Q       ++ +          + L+ ++++ + +      S
Sbjct: 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397

Query: 368 IPSSLGNLTKLANLELSSNSLQGNIPLSVG------NCQNLIGFDASH--ITLTGALPQQ 419
           I + L NL     + L       ++PL  G       C+ L  F        LT      
Sbjct: 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457

Query: 420 LLSITTLSLYLDLSH-NLLNGSLLLQVGNLKNLILLDISGNQFS 462
           +   +    ++ L +    +  L+       NL  L++ G  FS
Sbjct: 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 2/100 (2%)

Query: 288 TNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDV 347
            +CS   L      + +T    Y+  NQI  +       L  L  L + +NQL      V
Sbjct: 14  VDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 73

Query: 348 IGELKNLQILSLFGNFLHGSIPS-SLGNLTKLANLELSSN 386
             +L  L  LSL  N L  SIP  +  NL  L ++ L +N
Sbjct: 74  FDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 288 TNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDV 347
            NC +++L    A + +     ++  NQI  +      +LVNL  L   SN+L      V
Sbjct: 17  VNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV 76

Query: 348 IGELKNLQILSLFGNFLHGSIPS-SLGNLTKLANLELSSN 386
             +L  L  L L  N L  SIP  +  NL  L ++ L +N
Sbjct: 77  FDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 89  EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG 148
            +L L  N F+  +P  LS    LT + ++NN++     +   ++ +L TL L YN L  
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 149 QLPDFV-GNLSALQVIYIRGNSL 170
            +P      L +L+++ + GN +
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 295 LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNL 354
           +P  ++N    +T   +  N+I  + +    N+  L+ L +  N+L    P     LK+L
Sbjct: 46  VPKELSNYKH-LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104

Query: 355 QILSLFGNFLHGSIP-SSLGNLTKLANLELSSN 386
           ++LSL GN +   +P  +  +L+ L++L + +N
Sbjct: 105 RLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 54/345 (15%), Positives = 109/345 (31%), Gaps = 54/345 (15%)

Query: 106 LSRCSELTHLRVANNKLEGQIPKEIGSLLK-----LQTLALYYNNLTGQ-----LPDFVG 155
            S    +T L ++ N L      E+          + +L L  N+L  +     +     
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 156 NLSALQVIYIRGNSLGGKIPTTLGLL-----RNLVYLNVNENQFWYVSSFSGSLPFDILV 210
             + +  + + GN L  K    L          +  L++  N F   SS S S       
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF---SSKSSSEFKQAFS 134

Query: 211 NLP-NLKKLCIAENNF----VGSIPDSLSNA-SNLELLELAGNQFEGKVSIDFSSL---- 260
           NLP ++  L +  N+        +   L+   +N+  L L GN    K   + +      
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 261 -KNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI--- 316
             ++  L+L  N LG+ +  +L                +       +    +  N +   
Sbjct: 195 PASVTSLDLSANLLGLKSYAEL--------AYIFSSIPN------HVVSLNLCLNCLHGP 240

Query: 317 -LGIIHFGIRNLVNLIALGMQSNQLHGTIPD-------VIGELKNLQILSLFGNFLHGSI 368
            L  +     +L +L  + +  + +     +           ++ + ++   G  +H S 
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 369 PSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLT 413
              + NL +  + +    SL     +     Q  I        L 
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELR 345

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 54/328 (16%), Positives = 103/328 (31%), Gaps = 55/328 (16%)

Query: 35  HRHQRVTELDLSNQRIGGVLSPYVG-----NLSFLRYINLSDNGFHGEIPQEIGNL---- 85
           +    VT L+LS   +G   S  +        + +  +NLS N    +   E+       
Sbjct: 48  NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAI 107

Query: 86  -YRLEKLELSNNSFSGT----IPTNLSRC-SELTHLRVANNKLEGQIPKEIGSLLK---- 135
            + +  L+L  N FS           S   + +T L +  N L  +   E+  +L     
Sbjct: 108 PFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167

Query: 136 -LQTLALYYNNLTGQLPDFVGNLSA--------LQVIYIRGNSLGGKIPTTLGLL----- 181
            + +L L  NNL          L+         +  + +  N LG K    L  +     
Sbjct: 168 NVNSLNLRGNNLA---SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224

Query: 182 RNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNF-------VGSIPDSLS 234
            ++V LN+  N        S      +  +L +L+ + +  +           ++  +  
Sbjct: 225 NHVVSLNLCLNCL---HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281

Query: 235 NASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLK 294
           N   + L++  G +     SI  S+L        +  +L             L      +
Sbjct: 282 NIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQC---------LIFAQKHQ 332

Query: 295 LPHSIANLSSTMTHFYIGGNQILGIIHF 322
                 N+   +         +L   H 
Sbjct: 333 TNIEDLNIPDELRESIQTCKPLLEHHHH 360

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	472
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.98
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.27
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.01
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.99
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.73
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.69
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.57
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.51
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.11
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.81
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.73
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.35
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.62
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	80.63

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.3e-50  Score=420.43  Aligned_cols=454  Identities=30%  Similarity=0.456  Sum_probs=337.2

Q ss_pred             CCCCCCCCCCCCCCCcccccceeeCCCCCceEEEECCCCccCcc---c-----------------------CccccCCCC
Q 040195           10 HDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGV---L-----------------------SPYVGNLSF   63 (472)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~---~-----------------------~~~l~~~~~   63 (472)
                      .||. .+++|+.+.+||.|.|+.|.  ..+|+.|+++++.+.+.   .                       +..+..+++
T Consensus        25 ~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~  101 (768)
T 3rgz_A           25 PDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSAS  101 (768)
T ss_dssp             SCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTT
T ss_pred             CCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCC
Confidence            4777 89999988999999999997  47999999999877653   1                       257888899


Q ss_pred             ccEEeccCCcCccCcch--hhhcCCCCCEEEccCcccCCCCCccc-CCCCCCcEEEcccCcCcccCCcc---c-------
Q 040195           64 LRYINLSDNGFHGEIPQ--EIGNLYRLEKLELSNNSFSGTIPTNL-SRCSELTHLRVANNKLEGQIPKE---I-------  130 (472)
Q Consensus        64 L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~---l-------  130 (472)
                      |++|+|++|.+.+..|.  .+.++++|++|++++|.+.+..|..+ .++++|++|++++|.+++..+..   +       
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~  181 (768)
T 3rgz_A          102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK  181 (768)
T ss_dssp             CCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCC
T ss_pred             CCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCC
Confidence            99999999998876777  88999999999999998876666554 67777888888777766433332   2       


Q ss_pred             ---------------cCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195          131 ---------------GSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW  195 (472)
Q Consensus       131 ---------------~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  195 (472)
                                     ..+++|++|++++|.+.+..|. +..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus       182 ~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  260 (768)
T 3rgz_A          182 HLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV  260 (768)
T ss_dssp             EEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE
T ss_pred             EEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCccc
Confidence                           3456666666666666654554 677777777777777777666777777777777777777653


Q ss_pred             cccc----------------cccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccccc-cc
Q 040195          196 YVSS----------------FSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FS  258 (472)
Q Consensus       196 ~~~~----------------~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-l~  258 (472)
                      ....                ..+.+|......+++|++|++++|.+++..|..++.+++|++|++++|.+.+..+.. +.
T Consensus       261 ~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~  340 (768)
T 3rgz_A          261 GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL  340 (768)
T ss_dssp             ESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred             CccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh
Confidence            2110                111222222222355555555555555555555555555555555555554333332 55


Q ss_pred             ccCCCCeEEcCCCcCCCCCCCCcchhhhhc-ccCCCcC---------Cchhhh-ccccccEEEeecccccCcccccccCc
Q 040195          259 SLKNLAVLNLERNNLGIGTANDLGFVTFLT-NCSSLKL---------PHSIAN-LSSTMTHFYIGGNQILGIIHFGIRNL  327 (472)
Q Consensus       259 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~---------~~~~~~-~~~~l~~l~l~~~~~~~~~~~~l~~~  327 (472)
                      .+++|++|++++|.+.......+   .... +++.+.+         +..+.. ..+++++|++++|.++...+..+..+
T Consensus       341 ~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l  417 (768)
T 3rgz_A          341 KMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC  417 (768)
T ss_dssp             TCTTCCEEECCSSEEEECCCTTH---HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred             cCCCCCEEeCcCCccCccccHHH---HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence            55566666666655432111111   1111 2222222         111111 13478889999888888888889999


Q ss_pred             cCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEee
Q 040195          328 VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDA  407 (472)
Q Consensus       328 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  407 (472)
                      ++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus       418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  497 (768)
T 3rgz_A          418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL  497 (768)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence            99999999999999889999999999999999999999889999999999999999999999889999999999999999


Q ss_pred             cCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCcccc
Q 040195          408 SHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSI  471 (472)
Q Consensus       408 s~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~  471 (472)
                      ++|++.+.+|..+..+++|+ .|++++|++++.+|..+.++++|+.|++++|++++.+|..+.+
T Consensus       498 ~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~  560 (768)
T 3rgz_A          498 SNNRLTGEIPKWIGRLENLA-ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK  560 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCC-EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred             cCCccCCcCChHHhcCCCCC-EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence            99999988999999999999 9999999999999999999999999999999999999988765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.5e-47  Score=395.58  Aligned_cols=429  Identities=30%  Similarity=0.457  Sum_probs=301.5

Q ss_pred             CCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcE
Q 040195           35 HRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTH  114 (472)
Q Consensus        35 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~  114 (472)
                      ...+++++|++++|.+.+..+. +..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..  .+++|++
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~  273 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY  273 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred             ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence            4557777788887777665555 778888888888888877777777788888888888877776554443  5666777


Q ss_pred             EEcccCcCcccCCccccCC-CCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccc-cccCCCccEEEccCC
Q 040195          115 LRVANNKLEGQIPKEIGSL-LKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTT-LGLLRNLVYLNVNEN  192 (472)
Q Consensus       115 L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~  192 (472)
                      |++++|.+++..|..+... ++|++|++++|.+.+..|..+..+++|++|++++|.+++..+.. +..+++|++|++++|
T Consensus       274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred             EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence            7777776665556655553 67777777777766666666677777777777777666555543 666666777777666


Q ss_pred             cccc-ccc------------------cccccChhhh-cCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccc
Q 040195          193 QFWY-VSS------------------FSGSLPFDIL-VNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGK  252 (472)
Q Consensus       193 ~l~~-~~~------------------~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~  252 (472)
                      .+.. +..                  +.+.++.... ..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus       354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  433 (768)
T 3rgz_A          354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT  433 (768)
T ss_dssp             EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred             ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence            5431 110                  0111121111 1156677777777777767777777778888888888877767


Q ss_pred             ccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhc-----ccCCC-cCCchhhhccccccEEEeecccccCcccccccC
Q 040195          253 VSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLT-----NCSSL-KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRN  326 (472)
Q Consensus       253 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-----~~~~l-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~  326 (472)
                      .+..+..+++|+.|++++|.+.......+.....+.     +..-. ..|..+.. .++++.|++++|.++...+..+..
T Consensus       434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~~~  512 (768)
T 3rgz_A          434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGR  512 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc-CCCCCEEEccCCccCCcCChHHhc
Confidence            777777778888888888777643222222111111     11111 12333333 347888888888888777778888


Q ss_pred             ccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccch----------------------------------
Q 040195          327 LVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSL----------------------------------  372 (472)
Q Consensus       327 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l----------------------------------  372 (472)
                      +++|++|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..+                                  
T Consensus       513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (768)
T 3rgz_A          513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN  592 (768)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence            8888888888888887888888888888888888887765555432                                  


Q ss_pred             ------------------------------------hcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccC
Q 040195          373 ------------------------------------GNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGAL  416 (472)
Q Consensus       373 ------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~  416 (472)
                                                          ..++.|+.|++++|++++.+|..+..+++|+.|++++|.+++.+
T Consensus       593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  672 (768)
T 3rgz_A          593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI  672 (768)
T ss_dssp             EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence                                                23466888888888888888888888888888899888888888


Q ss_pred             ChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCc
Q 040195          417 PQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVT  468 (472)
Q Consensus       417 ~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~  468 (472)
                      |..+..++.|+ .|++++|++++.+|..+..+++|+.|++++|++++.+|+.
T Consensus       673 p~~l~~L~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          673 PDEVGDLRGLN-ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CGGGGGCTTCC-EEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             ChHHhCCCCCC-EEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            88888888888 8899999888888888888888999999999888888864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.8e-46  Score=382.46  Aligned_cols=421  Identities=22%  Similarity=0.292  Sum_probs=306.3

Q ss_pred             CCCCCCCCCCCcccc---cceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcC----------------
Q 040195           14 GVTSSWNNTINLCQW---MGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGF----------------   74 (472)
Q Consensus        14 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~----------------   74 (472)
                      .....|+...++|.|   .|+.|..+ .+|+.|+++++.+.+..+..++++++|++|+|++|.+                
T Consensus        55 ~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~  133 (636)
T 4eco_A           55 QPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM  133 (636)
T ss_dssp             ---CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTC
T ss_pred             ccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCc
Confidence            345689999999999   99999765 7999999999999999999999999999999998843                


Q ss_pred             --------------------------------------------------------------ccCcchhhhcCCCCCEEE
Q 040195           75 --------------------------------------------------------------HGEIPQEIGNLYRLEKLE   92 (472)
Q Consensus        75 --------------------------------------------------------------~~~~~~~~~~l~~L~~L~   92 (472)
                                                                                    ++ +|..+.++++|++|+
T Consensus       134 ~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~  212 (636)
T 4eco_A          134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFY  212 (636)
T ss_dssp             CHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEE
T ss_pred             hHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEE
Confidence                                                                          12 456677777777777


Q ss_pred             ccCcccCCC-----------------CCcccC--CCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccC-CCC-CCC
Q 040195           93 LSNNSFSGT-----------------IPTNLS--RCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNN-LTG-QLP  151 (472)
Q Consensus        93 L~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-i~~-~~~  151 (472)
                      +++|.+.+.                 .|..+.  ++++|++|++++|.+.+..|..+.++++|++|++++|. +++ .+|
T Consensus       213 Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp  292 (636)
T 4eco_A          213 MGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK  292 (636)
T ss_dssp             EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH
T ss_pred             CcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch
Confidence            777777753                 677777  77777777777777776777777777777777777776 665 566


Q ss_pred             ccccCC------CCccEEEecCCcccccccc--ccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccc
Q 040195          152 DFVGNL------SALQVIYIRGNSLGGKIPT--TLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAEN  223 (472)
Q Consensus       152 ~~l~~~------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  223 (472)
                      ..+..+      ++|++|++++|.++ .+|.  .++.+++|++|++++|.+.      +.+|  .+..+++|+.|++++|
T Consensus       293 ~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~------g~ip--~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          293 DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE------GKLP--AFGSEIKLASLNLAYN  363 (636)
T ss_dssp             HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE------EECC--CCEEEEEESEEECCSS
T ss_pred             HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc------cchh--hhCCCCCCCEEECCCC
Confidence            666554      77777777777777 5666  6777777777777777752      2444  3456677777777777


Q ss_pred             cccccCCccCcCCCC-CCEEecCCCcccccccccccccC--CCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhh
Q 040195          224 NFVGSIPDSLSNASN-LELLELAGNQFEGKVSIDFSSLK--NLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIA  300 (472)
Q Consensus       224 ~l~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  300 (472)
                      .+. .+|..+..+++ |++|++++|.++ ..+..+....  +|++|++++|.+.......+..      +     ... .
T Consensus       364 ~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------~-----~~~-~  429 (636)
T 4eco_A          364 QIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP------L-----DPT-P  429 (636)
T ss_dssp             EEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT------T-----CSS-C
T ss_pred             ccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcc------c-----ccc-c
Confidence            777 55666777777 777777777776 4445554443  7777777777765321111100      0     000 0


Q ss_pred             hccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCC-------CCCcEEEccCCcCccccccchh
Q 040195          301 NLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGEL-------KNLQILSLFGNFLHGSIPSSLG  373 (472)
Q Consensus       301 ~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~l~  373 (472)
                      ...++++.|++++|.++.+....+..+++|++|++++|.+....+..+...       ++|++|++++|.++ .+|..+.
T Consensus       430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  508 (636)
T 4eco_A          430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR  508 (636)
T ss_dssp             CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS
T ss_pred             ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh
Confidence            012378888888888887666666778888888888888884333333322       28888888888888 6676665


Q ss_pred             --cccccCeeeccCCcccccCCcCccCCCCCceEeec------CCcccccCChhhhhhcccceEEEcCCCcccccccccc
Q 040195          374 --NLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS------HITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV  445 (472)
Q Consensus       374 --~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls------~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l  445 (472)
                        .+++|++|++++|++++ +|..+..+++|+.|+++      +|.+.+.+|..+..+++|+ .|++++|+++ .+|..+
T Consensus       509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~-~ip~~~  585 (636)
T 4eco_A          509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT-QLQIGSNDIR-KVNEKI  585 (636)
T ss_dssp             TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC-EEECCSSCCC-BCCSCC
T ss_pred             hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC-EEECCCCcCC-ccCHhH
Confidence              78888888888888885 78888888888888884      5666777888888888888 8888888884 566655


Q ss_pred             cCCCCCceEeccCCeecccc
Q 040195          446 GNLKNLILLDISGNQFSGVI  465 (472)
Q Consensus       446 ~~~~~L~~L~L~~n~~~~~~  465 (472)
                      .  ++|+.|+|++|+++..-
T Consensus       586 ~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          586 T--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             C--TTCCEEECCSCTTCEEE
T ss_pred             h--CcCCEEECcCCCCcccc
Confidence            5  78888888888776433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.8e-45  Score=372.00  Aligned_cols=428  Identities=20%  Similarity=0.197  Sum_probs=301.5

Q ss_pred             CCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195           37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR  116 (472)
Q Consensus        37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~  116 (472)
                      .+++++|++++|.+....+..|.++++|++|++++|.+....|++|.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            36789999999999988888999999999999999999888889999999999999999999877888999999999999


Q ss_pred             cccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCcc--EEEccCCcc
Q 040195          117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLV--YLNVNENQF  194 (472)
Q Consensus       117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~l~~~~l  194 (472)
                      +++|.++...+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+  +|++++|.+
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            999999866677889999999999999999865445555699999999999999877777788888888  888888876


Q ss_pred             ccccccc--------------------------------------------------------------------cccCh
Q 040195          195 WYVSSFS--------------------------------------------------------------------GSLPF  206 (472)
Q Consensus       195 ~~~~~~~--------------------------------------------------------------------~~~~~  206 (472)
                      ..+....                                                                    ..++.
T Consensus       192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~  271 (606)
T 3t6q_A          192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS  271 (606)
T ss_dssp             CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred             CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence            5432100                                                                    11222


Q ss_pred             hhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCC-CCCCcchhh
Q 040195          207 DILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG-TANDLGFVT  285 (472)
Q Consensus       207 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~  285 (472)
                      ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+....+..+..+++|++|++++|.+... ....+.   
T Consensus       272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---  347 (606)
T 3t6q_A          272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE---  347 (606)
T ss_dssp             TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT---
T ss_pred             HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh---
Confidence            33455666777777777666 4455566677777777777776655555666777777777777665421 111111   


Q ss_pred             hhcccCCCcCC----------chhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcch-hhcCCCCC
Q 040195          286 FLTNCSSLKLP----------HSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD-VIGELKNL  354 (472)
Q Consensus       286 ~~~~~~~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~L  354 (472)
                      .+.+++.+.+.          .......++++.|++++|.+....+..+..+++|++|++++|.+.+..+. .+..+++|
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  427 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL  427 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence            11112211111          01112223666777776666666666666667777777777766654433 36666777


Q ss_pred             cEEEccCCcCccccccchhcccccCeeeccCCccccc---CCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEE
Q 040195          355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGN---IPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLD  431 (472)
Q Consensus       355 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~  431 (472)
                      ++|++++|.+.+..+..+..+++|++|++++|++++.   .+..+..+++|+.|++++|.+++..|..+..+++|+ .|+
T Consensus       428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~  506 (606)
T 3t6q_A          428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN-HVD  506 (606)
T ss_dssp             CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEE
T ss_pred             CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC-EEE
Confidence            7777777776666666666677777777777776642   224466677777777777777655566667777777 777


Q ss_pred             cCCCcccccccccccCCCCCceEeccCCeeccccCCccc
Q 040195          432 LSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS  470 (472)
Q Consensus       432 ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~  470 (472)
                      +++|++++..|+.+.++++| .|++++|.+++..|..|.
T Consensus       507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~  544 (606)
T 3t6q_A          507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP  544 (606)
T ss_dssp             CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred             CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence            77777776667777777777 777777777766555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.1e-44  Score=373.20  Aligned_cols=417  Identities=20%  Similarity=0.281  Sum_probs=326.0

Q ss_pred             CCCCCC-----Cc--ccc------------cceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEec-cCCcCccC
Q 040195           18 SWNNTI-----NL--CQW------------MGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINL-SDNGFHGE   77 (472)
Q Consensus        18 ~~~~~~-----~~--~~~------------~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L-~~~~~~~~   77 (472)
                      +|+...     ++  |.|            .|+.|.. ..+|+.|+++++.+.+..+..++++++|++|+| ++|.+.+.
T Consensus       285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~  363 (876)
T 4ecn_A          285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG  363 (876)
T ss_dssp             GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHT
T ss_pred             CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchHHhccccceEeeeccccccccc
Confidence            786554     45  899            9999976 478999999999999999999999999999999 66532211


Q ss_pred             ----------------------------------------------------------------------------cchh
Q 040195           78 ----------------------------------------------------------------------------IPQE   81 (472)
Q Consensus        78 ----------------------------------------------------------------------------~~~~   81 (472)
                                                                                                  +|..
T Consensus       364 ~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~  443 (876)
T 4ecn_A          364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA  443 (876)
T ss_dssp             TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG
T ss_pred             ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHH
Confidence                                                                                        5667


Q ss_pred             hhcCCCCCEEEccCcccCCC-----------------CCcccC--CCCCCcEEEcccCcCcccCCccccCCCCCcEEEcc
Q 040195           82 IGNLYRLEKLELSNNSFSGT-----------------IPTNLS--RCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALY  142 (472)
Q Consensus        82 ~~~l~~L~~L~L~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  142 (472)
                      +.++++|++|++++|.+.+.                 +|..+.  ++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls  523 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA  523 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence            78888888888888888752                 677766  88888888888888777788888888888888888


Q ss_pred             ccC-CCC-CCCccccCC-------CCccEEEecCCcccccccc--ccccCCCccEEEccCCccccccccccccChhhhcC
Q 040195          143 YNN-LTG-QLPDFVGNL-------SALQVIYIRGNSLGGKIPT--TLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVN  211 (472)
Q Consensus       143 ~~~-i~~-~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~  211 (472)
                      +|. +++ .+|..+..+       ++|++|++++|.++ .+|.  .+..+++|+.|++++|.+.       .+|  .+..
T Consensus       524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-------~lp--~~~~  593 (876)
T 4ecn_A          524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-------HLE--AFGT  593 (876)
T ss_dssp             TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-------BCC--CCCT
T ss_pred             CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-------cch--hhcC
Confidence            887 765 466555443       48888888888887 6666  7888888888888888763       333  4567


Q ss_pred             CCCccEEEcccccccccCCccCcCCCC-CCEEecCCCcccccccccccccC--CCCeEEcCCCcCCCCCCCCcchhhhhc
Q 040195          212 LPNLKKLCIAENNFVGSIPDSLSNASN-LELLELAGNQFEGKVSIDFSSLK--NLAVLNLERNNLGIGTANDLGFVTFLT  288 (472)
Q Consensus       212 ~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~  288 (472)
                      +++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ ..+..+...+  +|+.|++++|.+.....          
T Consensus       594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip----------  661 (876)
T 4ecn_A          594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR----------  661 (876)
T ss_dssp             TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS----------
T ss_pred             CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc----------
Confidence            788888888888887 66777888887 888888888887 4555555554  38888888888753210          


Q ss_pred             ccCCCcCCchhhh-ccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcC--------CCCCcEEEc
Q 040195          289 NCSSLKLPHSIAN-LSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGE--------LKNLQILSL  359 (472)
Q Consensus       289 ~~~~l~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~--------~~~L~~L~L  359 (472)
                           .++..... ..++++.|++++|.++.+....+..+++|+.|+|++|.+. .+|..+..        +++|++|+|
T Consensus       662 -----~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~L  735 (876)
T 4ecn_A          662 -----NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDL  735 (876)
T ss_dssp             -----SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred             -----cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEEC
Confidence                 01111111 1237999999999999766666678899999999999998 44443322        238999999


Q ss_pred             cCCcCccccccchh--cccccCeeeccCCcccccCCcCccCCCCCceEeecC------CcccccCChhhhhhcccceEEE
Q 040195          360 FGNFLHGSIPSSLG--NLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASH------ITLTGALPQQLLSITTLSLYLD  431 (472)
Q Consensus       360 ~~n~l~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~------~~~~~~~~~~l~~~~~l~~~L~  431 (472)
                      ++|++. .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|++++      |.+.+.+|..+..+++|+ .|+
T Consensus       736 s~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~-~L~  812 (876)
T 4ecn_A          736 RFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI-QLQ  812 (876)
T ss_dssp             CSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC-EEE
T ss_pred             CCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC-EEE
Confidence            999998 6777776  89999999999999996 788899999999999977      677778899999999999 999


Q ss_pred             cCCCcccccccccccCCCCCceEeccCCeeccccCCcc
Q 040195          432 LSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTL  469 (472)
Q Consensus       432 ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~  469 (472)
                      +++|++ +.+|..+.  ++|+.|+|++|++...-+..|
T Consensus       813 Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          813 IGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             CCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred             CCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence            999999 46777665  699999999999876665554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-43  Score=361.16  Aligned_cols=418  Identities=21%  Similarity=0.175  Sum_probs=326.7

Q ss_pred             CCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCc
Q 040195           34 GHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELT  113 (472)
Q Consensus        34 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~  113 (472)
                      ....+++++|++++|.+....+..|.++++|++|++++|.+....|.+|.++++|++|++++|.+.+..+..+.++++|+
T Consensus        53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~  132 (606)
T 3t6q_A           53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE  132 (606)
T ss_dssp             STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred             hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence            45668889999999988888888888899999999999888877788888888888998888888765566788888888


Q ss_pred             EEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCcc--EEEecCCcccc-------------------
Q 040195          114 HLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQ--VIYIRGNSLGG-------------------  172 (472)
Q Consensus       114 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~--~L~l~~~~~~~-------------------  172 (472)
                      +|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+  ++++++|.+++                   
T Consensus       133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~  212 (606)
T 3t6q_A          133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT  212 (606)
T ss_dssp             EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             EEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCc
Confidence            888888888754334445578888888888877755556666666666  55555555432                   


Q ss_pred             --------------------------------------------------------ccccccccCCCccEEEccCCcccc
Q 040195          173 --------------------------------------------------------KIPTTLGLLRNLVYLNVNENQFWY  196 (472)
Q Consensus       173 --------------------------------------------------------~~~~~l~~~~~L~~L~l~~~~l~~  196 (472)
                                                                              ..+..++.+++|++|++++|.+..
T Consensus       213 ~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  292 (606)
T 3t6q_A          213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE  292 (606)
T ss_dssp             SCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC
T ss_pred             hhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC
Confidence                                                                    222335566778888888877643


Q ss_pred             ccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccc-cccccccCCCCeEEcCCCcCCC
Q 040195          197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKV-SIDFSSLKNLAVLNLERNNLGI  275 (472)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~  275 (472)
                             +|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.... ...+..+++|++|++++|.+..
T Consensus       293 -------lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  364 (606)
T 3t6q_A          293 -------LPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET  364 (606)
T ss_dssp             -------CCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred             -------CCh-hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence                   332 2457788999999999888777777888899999999988876433 3457888889999999888764


Q ss_pred             CC--CCCcchhhhhcccCCCc--------CCchhhhccccccEEEeecccccCccc-ccccCccCcceEeccccccccCc
Q 040195          276 GT--ANDLGFVTFLTNCSSLK--------LPHSIANLSSTMTHFYIGGNQILGIIH-FGIRNLVNLIALGMQSNQLHGTI  344 (472)
Q Consensus       276 ~~--~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~  344 (472)
                      ..  ...+   ....+++.+.        .+.......++++.|++++|.+....+ ..+..+++|++|++++|.+.+..
T Consensus       365 ~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  441 (606)
T 3t6q_A          365 SDCCNLQL---RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS  441 (606)
T ss_dssp             EEESTTTT---TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred             ccCcchhc---ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC
Confidence            32  1111   1112222222        222222334589999999999987654 34889999999999999999888


Q ss_pred             chhhcCCCCCcEEEccCCcCccc---cccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhh
Q 040195          345 PDVIGELKNLQILSLFGNFLHGS---IPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLL  421 (472)
Q Consensus       345 ~~~~~~~~~L~~L~L~~n~l~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~  421 (472)
                      +..+..+++|++|++++|.+.+.   .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+.
T Consensus       442 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  521 (606)
T 3t6q_A          442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS  521 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred             HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhC
Confidence            88999999999999999999763   235688999999999999999988889999999999999999999988888999


Q ss_pred             hhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccc
Q 040195          422 SITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV  464 (472)
Q Consensus       422 ~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~  464 (472)
                      +++.+  .|++++|++++..|..+..+++|+.|++++|+++..
T Consensus       522 ~l~~L--~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          522 HLKGI--YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             TCCSC--EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             ccccc--EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            99888  699999999998888899999999999999999743

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.6e-43  Score=359.27  Aligned_cols=419  Identities=21%  Similarity=0.202  Sum_probs=284.6

Q ss_pred             CCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195           37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR  116 (472)
Q Consensus        37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~  116 (472)
                      .+++++|++++|.+.+..+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            37899999999999888888899999999999999999887888899999999999999999877788999999999999


Q ss_pred             cccCcCcccCCccccCCCCCcEEEccccCCCC-CCCccccCCCCccEEEecCCccccccccccccCCCcc----EEEccC
Q 040195          117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTG-QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLV----YLNVNE  191 (472)
Q Consensus       117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~  191 (472)
                      +++|.+....+..++++++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+..++.+.+|+    ++++++
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence            99999986666789999999999999999875 4688899999999999999998866665555444333    555555


Q ss_pred             Cccccccc------------------------------------------------------------------------
Q 040195          192 NQFWYVSS------------------------------------------------------------------------  199 (472)
Q Consensus       192 ~~l~~~~~------------------------------------------------------------------------  199 (472)
                      |.+..+..                                                                        
T Consensus       191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  270 (606)
T 3vq2_A          191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY  270 (606)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred             CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence            55432221                                                                        


Q ss_pred             ---cccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCC
Q 040195          200 ---FSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG  276 (472)
Q Consensus       200 ---~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  276 (472)
                         +.+..+.  +..+++|+.|+++++.+.. ++ .+..+++|++|++++|.+. ..+ .+ .+++|++|++++|.....
T Consensus       271 ~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~  343 (606)
T 3vq2_A          271 TNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSIS  343 (606)
T ss_dssp             CTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred             cccccccccc--cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccc
Confidence               0011111  3344556666666665543 23 4556666666666666663 333 23 555666666655532211


Q ss_pred             CCCCcchhhhhcccCCCcCC----------chhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcc-
Q 040195          277 TANDLGFVTFLTNCSSLKLP----------HSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP-  345 (472)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-  345 (472)
                      .  .+   ....+++.+.+.          .......++++.|++++|.++... ..+..+++|+.|++++|.+.+..+ 
T Consensus       344 ~--~~---~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~  417 (606)
T 3vq2_A          344 F--KK---VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEF  417 (606)
T ss_dssp             C--CC---CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTT
T ss_pred             h--hh---ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccCh
Confidence            0  00   011111111111          111122346777777777666543 556667777777777777765555 


Q ss_pred             hhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccc-cCCcCccCCCCCceEeecCCcccccCChhhhhhc
Q 040195          346 DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG-NIPLSVGNCQNLIGFDASHITLTGALPQQLLSIT  424 (472)
Q Consensus       346 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~  424 (472)
                      ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .++..+..+++|+.|++++|.+++..|..+..++
T Consensus       418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  497 (606)
T 3vq2_A          418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH  497 (606)
T ss_dssp             TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence            456667777777777777766666666777777777777777765 2566667777777777777777655566666777


Q ss_pred             ccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCccc
Q 040195          425 TLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS  470 (472)
Q Consensus       425 ~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~  470 (472)
                      +|+ .|++++|++++..|..+.++++|+.|+|++|+++ .+|..+.
T Consensus       498 ~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~  541 (606)
T 3vq2_A          498 RLQ-LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQ  541 (606)
T ss_dssp             TCC-EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGG
T ss_pred             cCC-EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHh
Confidence            777 7777777777666677777777777777777766 4554443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-43  Score=353.88  Aligned_cols=419  Identities=21%  Similarity=0.212  Sum_probs=325.3

Q ss_pred             CCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195           37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR  116 (472)
Q Consensus        37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~  116 (472)
                      .+++++|++++|.+.+..+..|..+++|++|++++|.+....+++|.++++|++|++++|.+.+..+..|..+++|++|+
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            36799999999999888888899999999999999998877788899999999999999998877778899999999999


Q ss_pred             cccCcCcccCCccccCCCCCcEEEccccCCCC-CCCccccCCCCccEEEecCCccccccccccccCCCc----cEEEccC
Q 040195          117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTG-QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL----VYLNVNE  191 (472)
Q Consensus       117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L----~~L~l~~  191 (472)
                      +++|.++...+..++++++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+..++.+++|    +++++++
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence            99999885555568899999999999999886 368889999999999999999887666777777777    7888888


Q ss_pred             Cccccccccc----------------------------------------------------------------------
Q 040195          192 NQFWYVSSFS----------------------------------------------------------------------  201 (472)
Q Consensus       192 ~~l~~~~~~~----------------------------------------------------------------------  201 (472)
                      |.+..+....                                                                      
T Consensus       187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  266 (570)
T 2z63_A          187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  266 (570)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred             CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence            7654332100                                                                      


Q ss_pred             ----cccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCC
Q 040195          202 ----GSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGT  277 (472)
Q Consensus       202 ----~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  277 (472)
                          .......+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+.. .+.  ..+++|++|++++|.+....
T Consensus       267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~  341 (570)
T 2z63_A          267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAF  341 (570)
T ss_dssp             TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEESCBSCCBC
T ss_pred             chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccc-cCc--ccccccCEEeCcCCcccccc
Confidence                0001123344567777777777666 355556666 77777777776652 222  45677777777777654321


Q ss_pred             CCCcchhhhhcccCCCcCC----------chhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcc-h
Q 040195          278 ANDLGFVTFLTNCSSLKLP----------HSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP-D  346 (472)
Q Consensus       278 ~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~  346 (472)
                      ..     ....+++.+.+.          .......++++.|++++|.+....+. +..+++|++|++++|.+.+..+ .
T Consensus       342 ~~-----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~  415 (570)
T 2z63_A          342 SE-----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS  415 (570)
T ss_dssp             CC-----CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred             cc-----ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence            11     112222222221          11122335888999998888876554 8888999999999998886655 4


Q ss_pred             hhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccc-ccCCcCccCCCCCceEeecCCcccccCChhhhhhcc
Q 040195          347 VIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ-GNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITT  425 (472)
Q Consensus       347 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~  425 (472)
                      .+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++..|..+..+++
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence            6788999999999999998888888889999999999999987 468888999999999999999998777888889999


Q ss_pred             cceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCC
Q 040195          426 LSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPV  467 (472)
Q Consensus       426 l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~  467 (472)
                      |+ .|++++|++++..+..|.++++|+.|++++|+++...|.
T Consensus       496 L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          496 LQ-VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CC-EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CC-EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99 999999999988888889999999999999999877765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.8e-42  Score=352.53  Aligned_cols=423  Identities=20%  Similarity=0.214  Sum_probs=301.8

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV  117 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l  117 (472)
                      +++++|++++|.+....+..|.++++|++|++++|.+....++++.++++|++|++++|.+....+..|.++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            68999999999998888888999999999999999998888889999999999999999988655557999999999999


Q ss_pred             ccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccc--cCCCccEEEccCCccc
Q 040195          118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLG--LLRNLVYLNVNENQFW  195 (472)
Q Consensus       118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~l~  195 (472)
                      ++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.  .+++|++|++++|.+.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            99999866667899999999999999999887788888999999999999988866555543  4588999999998775


Q ss_pred             cccccc-cccCh-------------h------hhcCCCCccEEEcccccccccCCccCcCCCC--CCEEecCCCcccccc
Q 040195          196 YVSSFS-GSLPF-------------D------ILVNLPNLKKLCIAENNFVGSIPDSLSNASN--LELLELAGNQFEGKV  253 (472)
Q Consensus       196 ~~~~~~-~~~~~-------------~------~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~--L~~L~l~~~~~~~~~  253 (472)
                      .+.... ..+..             .      .....++|++|++++|.+.+..+..+..++.  |++|++++|.++...
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  264 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG  264 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence            442100 00000             0      0001245666666666666555555555433  666666666666555


Q ss_pred             cccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcC--------------Cc---hhhhccccccEEEeecccc
Q 040195          254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKL--------------PH---SIANLSSTMTHFYIGGNQI  316 (472)
Q Consensus       254 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------~~---~~~~~~~~l~~l~l~~~~~  316 (472)
                      +..+..+++|++|++++|.+.......+...   .+++.+.+              |.   ......++++.+++++|.+
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l  341 (680)
T 1ziw_A          265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL---FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI  341 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBSEECTTTTTTC---TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred             cccccCcccccEeeCCCCccCccChhhhcCC---CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence            5556666666666666666543222111111   11111111              10   1122234677777777776


Q ss_pred             cCcccccccCccCcceEeccc----------------------------cccccCcchhhcCCCCCcEEEccCCcCcccc
Q 040195          317 LGIIHFGIRNLVNLIALGMQS----------------------------NQLHGTIPDVIGELKNLQILSLFGNFLHGSI  368 (472)
Q Consensus       317 ~~~~~~~l~~~~~L~~L~l~~----------------------------~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~  368 (472)
                      ....+..|..+++|++|++++                            |.+.+..+.++..+++|++|++++|.+.+.+
T Consensus       342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  421 (680)
T 1ziw_A          342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL  421 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred             CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence            666555566665555555554                            4455455566777777888888877776544


Q ss_pred             c-cchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCccc--ccCChhhhhhcccceEEEcCCCcccccccccc
Q 040195          369 P-SSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLT--GALPQQLLSITTLSLYLDLSHNLLNGSLLLQV  445 (472)
Q Consensus       369 ~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~--~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l  445 (472)
                      + ..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.  +..|..+..+++++ .|++++|++++..+..|
T Consensus       422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~-~L~Ls~N~l~~i~~~~~  500 (680)
T 1ziw_A          422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT-ILDLSNNNIANINDDML  500 (680)
T ss_dssp             CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC-EEECCSSCCCCCCTTTT
T ss_pred             CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC-EEECCCCCCCcCChhhh
Confidence            4 56677778888888888777666677777888888888888775  45677888888888 99999999988777788


Q ss_pred             cCCCCCceEeccCCeeccc
Q 040195          446 GNLKNLILLDISGNQFSGV  464 (472)
Q Consensus       446 ~~~~~L~~L~L~~n~~~~~  464 (472)
                      .++++|+.|++++|.+++.
T Consensus       501 ~~l~~L~~L~Ls~N~l~~~  519 (680)
T 1ziw_A          501 EGLEKLEILDLQHNNLARL  519 (680)
T ss_dssp             TTCTTCCEEECCSSCCGGG
T ss_pred             ccccccCEEeCCCCCcccc
Confidence            8999999999999998754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.8e-41  Score=350.14  Aligned_cols=145  Identities=20%  Similarity=0.206  Sum_probs=110.0

Q ss_pred             CCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCc
Q 040195           34 GHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELT  113 (472)
Q Consensus        34 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~  113 (472)
                      ....+++++|++++|.+.+..+..+.++++|++|++++|.+....+.+|.++++|++|++++|.+.+..+..|.++++|+
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            34457888888888888888788888888888888888888866556788888888888888888766667788888888


Q ss_pred             EEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCcccc--CCCCccEEEecCCcccccccccc
Q 040195          114 HLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVG--NLSALQVIYIRGNSLGGKIPTTL  178 (472)
Q Consensus       114 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l  178 (472)
                      +|++++|.+++..+..+.++++|++|++++|.+++..+..+.  .+++|++|++++|.+++..+..+
T Consensus       125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  191 (680)
T 1ziw_A          125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF  191 (680)
T ss_dssp             EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG
T ss_pred             EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhh
Confidence            888888888766677777888888888888877755444433  44677777777776654444333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.2e-41  Score=346.90  Aligned_cols=412  Identities=19%  Similarity=0.191  Sum_probs=315.2

Q ss_pred             CCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCc
Q 040195           34 GHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELT  113 (472)
Q Consensus        34 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~  113 (472)
                      ....+++++|++++|.+.+..+..|.++++|++|++++|.+....|++|.++++|++|++++|.+.+..+..++++++|+
T Consensus        52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  131 (606)
T 3vq2_A           52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK  131 (606)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred             ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence            45678999999999999988888999999999999999999988899999999999999999999877667899999999


Q ss_pred             EEEcccCcCcc-cCCccccCCCCCcEEEccccCCCCCCCccccCCC---------------------------CccEEEe
Q 040195          114 HLRVANNKLEG-QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS---------------------------ALQVIYI  165 (472)
Q Consensus       114 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~---------------------------~L~~L~l  165 (472)
                      +|++++|.+.. ..|..+.++++|++|++++|.+++..+..+..++                           +|++|++
T Consensus       132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L  211 (606)
T 3vq2_A          132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL  211 (606)
T ss_dssp             EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred             EEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeec
Confidence            99999999875 4688899999999999999988765554443322                           4455555


Q ss_pred             cCCccc----------------------------------------------------------cccccccccCCCccEE
Q 040195          166 RGNSLG----------------------------------------------------------GKIPTTLGLLRNLVYL  187 (472)
Q Consensus       166 ~~~~~~----------------------------------------------------------~~~~~~l~~~~~L~~L  187 (472)
                      ++|.+.                                                          +..+. +..+++|+.|
T Consensus       212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L  290 (606)
T 3vq2_A          212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAM  290 (606)
T ss_dssp             ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEE
T ss_pred             cCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEE
Confidence            554332                                                          00111 3345666666


Q ss_pred             EccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEE
Q 040195          188 NVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLN  267 (472)
Q Consensus       188 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  267 (472)
                      +++++.+..+       +  .+..+++|++|++++|.+. .+|. + .+++|++|++++|......  .+..+++|++|+
T Consensus       291 ~l~~~~~~~l-------~--~l~~~~~L~~L~l~~n~l~-~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  356 (606)
T 3vq2_A          291 SLAGVSIKYL-------E--DVPKHFKWQSLSIIRCQLK-QFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLD  356 (606)
T ss_dssp             EEESCCCCCC-------C--CCCTTCCCSEEEEESCCCS-SCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEE
T ss_pred             EecCccchhh-------h--hccccccCCEEEcccccCc-cccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEE
Confidence            6666665333       2  3446677777888777773 4453 3 6667777777666433222  445666666666


Q ss_pred             cCCCcCCCCCCCCcchhhhhcccCCCc--------CCchhhhccccccEEEeecccccCccc-ccccCccCcceEecccc
Q 040195          268 LERNNLGIGTANDLGFVTFLTNCSSLK--------LPHSIANLSSTMTHFYIGGNQILGIIH-FGIRNLVNLIALGMQSN  338 (472)
Q Consensus       268 l~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~  338 (472)
                      +++|.+....... .......+++.+.        ++..+.. .++++.|++++|.+....+ ..+..+++|++|++++|
T Consensus       357 ls~n~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          357 LSRNALSFSGCCS-YSDLGTNSLRHLDLSFNGAIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             CCSSCEEEEEECC-HHHHCCSCCCEEECCSCSEEEECCCCTT-CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             CcCCccCCCcchh-hhhccCCcccEeECCCCccccchhhccC-CCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence            6666654221000 0111111222221        2222222 3489999999999998776 68899999999999999


Q ss_pred             ccccCcchhhcCCCCCcEEEccCCcCcc-ccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCC
Q 040195          339 QLHGTIPDVIGELKNLQILSLFGNFLHG-SIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALP  417 (472)
Q Consensus       339 ~i~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~  417 (472)
                      .+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus       435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  514 (606)
T 3vq2_A          435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS  514 (606)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred             CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence            9998889999999999999999999987 478889999999999999999998888899999999999999999997778


Q ss_pred             hhhhhhcccceEEEcCCCcccccccccccCCC-CCceEeccCCeeccc
Q 040195          418 QQLLSITTLSLYLDLSHNLLNGSLLLQVGNLK-NLILLDISGNQFSGV  464 (472)
Q Consensus       418 ~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~-~L~~L~L~~n~~~~~  464 (472)
                      ..+..+++|+ .|++++|+++ .+|..+..++ +|+.|++++|++...
T Consensus       515 ~~~~~l~~L~-~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          515 SHYNQLYSLS-TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             GGTTTCTTCC-EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             HHccCCCcCC-EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence            9999999999 9999999999 5676788886 699999999998743

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.1e-42  Score=345.05  Aligned_cols=417  Identities=18%  Similarity=0.163  Sum_probs=288.8

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV  117 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l  117 (472)
                      +++++|++++|.+.+..+..+..+++|++|++++|.+....+++|.++++|++|++++|.+.+..+..|..+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            68999999999999888889999999999999999999888889999999999999999998766667999999999999


Q ss_pred             ccCcCcc-cCCccccCCCCCcEEEccccCCCCCC-CccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195          118 ANNKLEG-QIPKEIGSLLKLQTLALYYNNLTGQL-PDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW  195 (472)
Q Consensus       118 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~i~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  195 (472)
                      ++|.++. ..+..+.++++|++|++++|...+.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+ 
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-  184 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-  184 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-
Confidence            9999875 34567899999999999999843344 46788999999999999999988888999999999999999876 


Q ss_pred             cccccccccChhhhcCCCCccEEEcccccccccC--C-ccCcCCCCCCEEecCCCcccccccc----cccccCCCCeEEc
Q 040195          196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI--P-DSLSNASNLELLELAGNQFEGKVSI----DFSSLKNLAVLNL  268 (472)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~-~~l~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l  268 (472)
                            ..++...+..+++|+.|++++|.+++..  + .....+++|+.|++++|.+++....    .+..+++|+.+++
T Consensus       185 ------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l  258 (549)
T 2z81_A          185 ------AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF  258 (549)
T ss_dssp             ------TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred             ------cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence                  3334444567899999999999887632  1 2234567888888888776543222    2344556666666


Q ss_pred             CCCcCCCCCCCC------cchh--------------------------hh--------hcccCCCcCCchhhhccccccE
Q 040195          269 ERNNLGIGTAND------LGFV--------------------------TF--------LTNCSSLKLPHSIANLSSTMTH  308 (472)
Q Consensus       269 ~~~~~~~~~~~~------~~~~--------------------------~~--------~~~~~~l~~~~~~~~~~~~l~~  308 (472)
                      ++|.+...+...      ....                          ..        +.+..-..+|..+....++++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~  338 (549)
T 2z81_A          259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF  338 (549)
T ss_dssp             ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCE
T ss_pred             ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccE
Confidence            655543211000      0000                          00        0011111234444333456777


Q ss_pred             EEeecccccCccc---ccccCccCcceEeccccccccCcc--hhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195          309 FYIGGNQILGIIH---FGIRNLVNLIALGMQSNQLHGTIP--DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL  383 (472)
Q Consensus       309 l~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  383 (472)
                      |++++|.+....+   ..+..+++|++|++++|.+.+..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus       339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~L  417 (549)
T 2z81_A          339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL  417 (549)
T ss_dssp             EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEEC
T ss_pred             EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEEC
Confidence            7777777665432   235566777777777776664322  34566677777777777666 45555666666666666


Q ss_pred             cCCcccccCCcC------------------ccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccc
Q 040195          384 SSNSLQGNIPLS------------------VGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV  445 (472)
Q Consensus       384 ~~~~~~~~~~~~------------------~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l  445 (472)
                      ++|.++ .++..                  ...+++|++|++++|+++ .+|. ...+++++ .|++++|++++..+..+
T Consensus       418 s~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~-~L~Ls~N~l~~~~~~~~  493 (549)
T 2z81_A          418 SSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLL-VMKISRNQLKSVPDGIF  493 (549)
T ss_dssp             TTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCC-EEECCSSCCCCCCTTGG
T ss_pred             CCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCC-EEecCCCccCCcCHHHH
Confidence            666655 22211                  124566666777777666 4554 34566666 77777777776666666


Q ss_pred             cCCCCCceEeccCCeeccccC
Q 040195          446 GNLKNLILLDISGNQFSGVIP  466 (472)
Q Consensus       446 ~~~~~L~~L~L~~n~~~~~~p  466 (472)
                      ..+++|+.|++++|+++...|
T Consensus       494 ~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          494 DRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGCTTCCEEECCSSCBCCCHH
T ss_pred             hcCcccCEEEecCCCccCCCc
Confidence            677777777777777654433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-41  Score=342.43  Aligned_cols=392  Identities=19%  Similarity=0.180  Sum_probs=313.2

Q ss_pred             CCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCc
Q 040195           34 GHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELT  113 (472)
Q Consensus        34 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~  113 (472)
                      ...++++++|++++|.+.+..+..|.++++|++|++++|.+....+++|.++++|++|++++|.+....+..++++++|+
T Consensus        48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  127 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (570)
T ss_dssp             TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred             hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence            45678999999999999988888899999999999999999877778999999999999999998865555789999999


Q ss_pred             EEEcccCcCcc-cCCccccCCCCCcEEEccccCCCCCCCccccCCCCc----cEEEecCCccccc---------------
Q 040195          114 HLRVANNKLEG-QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL----QVIYIRGNSLGGK---------------  173 (472)
Q Consensus       114 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L----~~L~l~~~~~~~~---------------  173 (472)
                      +|++++|.+.. ..|..+.++++|++|++++|.+.+..+..+..+++|    +.+++++|.+++.               
T Consensus       128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l  207 (570)
T 2z63_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL  207 (570)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred             EEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEec
Confidence            99999999875 368889999999999999998876555656555555    5566665544322               


Q ss_pred             ------------------------------------------------------------------cccccccCCCccEE
Q 040195          174 ------------------------------------------------------------------IPTTLGLLRNLVYL  187 (472)
Q Consensus       174 ------------------------------------------------------------------~~~~l~~~~~L~~L  187 (472)
                                                                                        .+..+..+++|++|
T Consensus       208 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L  287 (570)
T 2z63_A          208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF  287 (570)
T ss_dssp             ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEE
T ss_pred             ccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEE
Confidence                                                                              22334556778888


Q ss_pred             EccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEE
Q 040195          188 NVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLN  267 (472)
Q Consensus       188 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  267 (472)
                      ++++|.+..+       +. .+..+ +|++|++++|.+. .+|.  ..+++|++|++++|.+....+.  ..+++|++|+
T Consensus       288 ~l~~~~l~~l-------~~-~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~  353 (570)
T 2z63_A          288 SLVSVTIERV-------KD-FSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLD  353 (570)
T ss_dssp             EEESCEECSC-------CB-CCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEE
T ss_pred             EecCccchhh-------hh-hhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEe
Confidence            8888876433       22 23355 9999999999988 4443  4789999999999988654443  7889999999


Q ss_pred             cCCCcCCCCCCCCcchhhhhcccCCCcCC--------chhhhccccccEEEeecccccCccc-ccccCccCcceEecccc
Q 040195          268 LERNNLGIGTANDLGFVTFLTNCSSLKLP--------HSIANLSSTMTHFYIGGNQILGIIH-FGIRNLVNLIALGMQSN  338 (472)
Q Consensus       268 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~l~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~  338 (472)
                      +++|.+...+.. ........+++.+.+.        .. ....++++.|++++|.+....+ ..+..+++|++|++++|
T Consensus       354 l~~n~l~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  431 (570)
T 2z63_A          354 LSRNGLSFKGCC-SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  431 (570)
T ss_dssp             CCSSCCBEEEEE-EHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred             CcCCccCccccc-cccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence            999987632100 0112222333333322        22 2234589999999999987655 57889999999999999


Q ss_pred             ccccCcchhhcCCCCCcEEEccCCcCc-cccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCC
Q 040195          339 QLHGTIPDVIGELKNLQILSLFGNFLH-GSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALP  417 (472)
Q Consensus       339 ~i~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~  417 (472)
                      .+.+..+..+..+++|++|++++|.+. +..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+
T Consensus       432 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  511 (570)
T 2z63_A          432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD  511 (570)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence            999888889999999999999999987 5688899999999999999999998889999999999999999999997666


Q ss_pred             hhhhhhcccceEEEcCCCccccccc
Q 040195          418 QQLLSITTLSLYLDLSHNLLNGSLL  442 (472)
Q Consensus       418 ~~l~~~~~l~~~L~ls~n~l~~~~~  442 (472)
                      ..+..+++++ .|++++|++.+..+
T Consensus       512 ~~~~~l~~L~-~L~l~~N~~~~~~~  535 (570)
T 2z63_A          512 GIFDRLTSLQ-KIWLHTNPWDCSCP  535 (570)
T ss_dssp             TTTTTCTTCC-EEECCSSCBCCCTT
T ss_pred             HHhhcccCCc-EEEecCCcccCCCc
Confidence            7788999999 99999999986544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3e-41  Score=355.28  Aligned_cols=421  Identities=22%  Similarity=0.173  Sum_probs=275.9

Q ss_pred             ccccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCc-cCcchhhhcCCCCCEEEccCcccCCCCCc
Q 040195           26 CQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFH-GEIPQEIGNLYRLEKLELSNNSFSGTIPT  104 (472)
Q Consensus        26 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~  104 (472)
                      +.|..+..  -.+++++|++++|.+....+..|.++++|++|++++|... ...+++|.++++|++|++++|.+.+..|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            45666665  4588999999999998888889999999999999998544 34478899999999999999999877788


Q ss_pred             ccCCCCCCcEEEcccCcCcccCCcc--ccCCCCCcEEEccccCCCCCCC-ccccCCCCccEEEecCCccccccccccccC
Q 040195          105 NLSRCSELTHLRVANNKLEGQIPKE--IGSLLKLQTLALYYNNLTGQLP-DFVGNLSALQVIYIRGNSLGGKIPTTLGLL  181 (472)
Q Consensus       105 ~l~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~  181 (472)
                      .|.++++|++|++++|.+.+..+..  +.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            9999999999999999988655544  8889999999999999876544 578899999999999998876666666554


Q ss_pred             --CCccEEEccCCcccccccc------------------------ccccC------------------------------
Q 040195          182 --RNLVYLNVNENQFWYVSSF------------------------SGSLP------------------------------  205 (472)
Q Consensus       182 --~~L~~L~l~~~~l~~~~~~------------------------~~~~~------------------------------  205 (472)
                        ++|+.|++++|.+......                        .+..+                              
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~  251 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN  251 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence              5666666665554321100                        00000                              


Q ss_pred             -----hhhhcC--CCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCC
Q 040195          206 -----FDILVN--LPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTA  278 (472)
Q Consensus       206 -----~~~~~~--~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  278 (472)
                           ...+..  .++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|++|++++|.+.....
T Consensus       252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  331 (844)
T 3j0a_A          252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS  331 (844)
T ss_dssp             STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred             cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence                 000111  2456666666666665555666666666666666666665555566666666666666666542111


Q ss_pred             CCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcc-------------
Q 040195          279 NDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP-------------  345 (472)
Q Consensus       279 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-------------  345 (472)
                                        .. ....++++.|++++|.+....+..|..+++|+.|++++|.+.....             
T Consensus       332 ------------------~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~  392 (844)
T 3j0a_A          332 ------------------SN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK  392 (844)
T ss_dssp             ------------------CS-CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCC
T ss_pred             ------------------HH-hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCC
Confidence                              11 1122378888888888877777777788888888888877653210             


Q ss_pred             ---------------------------hhhcCCCCCcEEEccCCcCcccccc-chhcccccCeeeccCCccc-----ccC
Q 040195          346 ---------------------------DVIGELKNLQILSLFGNFLHGSIPS-SLGNLTKLANLELSSNSLQ-----GNI  392 (472)
Q Consensus       346 ---------------------------~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~l~~~~~~-----~~~  392 (472)
                                                 ..+..+++|++|++++|++.+..+. .+..+++|+.|++++|.++     +..
T Consensus       393 l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~  472 (844)
T 3j0a_A          393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC  472 (844)
T ss_dssp             CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred             cccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence                                       0112344444555555444422111 2233445555555555544     122


Q ss_pred             CcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCccc
Q 040195          393 PLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS  470 (472)
Q Consensus       393 ~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~  470 (472)
                      +..+..+++|+.|++++|.+++..+..+..+++|+ .|++++|++++..+..+.  ++|+.|+|++|.+++..|..|.
T Consensus       473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~  547 (844)
T 3j0a_A          473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR-GLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV  547 (844)
T ss_dssp             SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS-EEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS
T ss_pred             hhhhcCcccccEEECCCCcccccChhHccchhhhh-eeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC
Confidence            23455566677777777766655555566667777 777777777655555544  6677777777777766666654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.3e-41  Score=340.70  Aligned_cols=375  Identities=21%  Similarity=0.319  Sum_probs=323.1

Q ss_pred             CCccEEeccCCcCccCcchhhhcCCCCCEEEccCccc-------------------------------------------
Q 040195           62 SFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF-------------------------------------------   98 (472)
Q Consensus        62 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~-------------------------------------------   98 (472)
                      .+++.|+|+++.+.+.+|.++.++++|++|++++|.+                                           
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            5789999999999988999999999999999998843                                           


Q ss_pred             -----------------------------------CCCCCcccCCCCCCcEEEcccCcCccc-----------------C
Q 040195           99 -----------------------------------SGTIPTNLSRCSELTHLRVANNKLEGQ-----------------I  126 (472)
Q Consensus        99 -----------------------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------------~  126 (472)
                                                         ++ +|..++++++|++|++++|.+++.                 .
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                                               22 567788999999999999999864                 8


Q ss_pred             Ccccc--CCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCc-ccc-ccccccccC------CCccEEEccCCcccc
Q 040195          127 PKEIG--SLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNS-LGG-KIPTTLGLL------RNLVYLNVNENQFWY  196 (472)
Q Consensus       127 ~~~l~--~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~l~~  196 (472)
                      |..+.  ++++|++|++++|.+.+..|..+..+++|++|++++|. +++ ..|..++.+      ++|++|++++|.+. 
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-  318 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-  318 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence            88888  99999999999999988999999999999999999998 887 778777776      99999999999973 


Q ss_pred             ccccccccCh-hhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCC-CCeEEcCCCcCC
Q 040195          197 VSSFSGSLPF-DILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKN-LAVLNLERNNLG  274 (472)
Q Consensus       197 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~  274 (472)
                            .+|. +.+..+++|+.|++++|.+.+.+| .+..+++|++|++++|.++ ..+..+..+++ |++|++++|.+.
T Consensus       319 ------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          319 ------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             ------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred             ------ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence                  3443 357789999999999999997777 8999999999999999998 66777999999 999999999986


Q ss_pred             CCCCCCcchhhhhcccCCCcCCchhhhc-cccccEEEeecccccCccccccc-------CccCcceEeccccccccCcch
Q 040195          275 IGTANDLGFVTFLTNCSSLKLPHSIANL-SSTMTHFYIGGNQILGIIHFGIR-------NLVNLIALGMQSNQLHGTIPD  346 (472)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~~l~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~i~~~~~~  346 (472)
                      .                   +|..+... .++++.|++++|.+....+..+.       .+++|++|++++|.+....+.
T Consensus       391 ~-------------------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~  451 (636)
T 4eco_A          391 Y-------------------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE  451 (636)
T ss_dssp             S-------------------CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH
T ss_pred             c-------------------cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHH
Confidence            2                   22222211 13799999999999988777777       788999999999999955555


Q ss_pred             hhcCCCCCcEEEccCCcCccccccc-hhc-------ccccCeeeccCCcccccCCcCcc--CCCCCceEeecCCcccccC
Q 040195          347 VIGELKNLQILSLFGNFLHGSIPSS-LGN-------LTKLANLELSSNSLQGNIPLSVG--NCQNLIGFDASHITLTGAL  416 (472)
Q Consensus       347 ~~~~~~~L~~L~L~~n~l~~~~~~~-l~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~ls~~~~~~~~  416 (472)
                      .+..+++|++|++++|.++ .++.. +..       +++|++|++++|+++ .+|..+.  .+++|+.|++++|++++ +
T Consensus       452 ~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-i  528 (636)
T 4eco_A          452 LFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-F  528 (636)
T ss_dssp             HHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred             HHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-c
Confidence            6777999999999999998 44443 332       239999999999999 7888776  99999999999999995 9


Q ss_pred             ChhhhhhcccceEEEc------CCCcccccccccccCCCCCceEeccCCeeccccCCccc
Q 040195          417 PQQLLSITTLSLYLDL------SHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS  470 (472)
Q Consensus       417 ~~~l~~~~~l~~~L~l------s~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~  470 (472)
                      |..+..+++|+ .|++      ++|++.+.+|..+.++++|+.|+|++|.+ +.+|..+.
T Consensus       529 p~~~~~l~~L~-~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~  586 (636)
T 4eco_A          529 PTQPLNSSTLK-GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT  586 (636)
T ss_dssp             CCGGGGCSSCC-EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             ChhhhcCCCCC-EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence            99999999999 9999      56788889999999999999999999999 68887653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.4e-39  Score=316.52  Aligned_cols=364  Identities=18%  Similarity=0.179  Sum_probs=189.3

Q ss_pred             CCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCC-CCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEE
Q 040195           62 SFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG-TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA  140 (472)
Q Consensus        62 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  140 (472)
                      ++|++|++++|.+....+..+.++++|++|++++|.+.. ..+..|..+++|++|++++|.++...+..+.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            455555555555554445555555555555555555432 2234455555555555555555544455555555555555


Q ss_pred             ccccCCCCCCCcc--ccCCCCccEEEecCCccccccccc-cccCCCccEEEccCCccccccccccccChhhhcC--CCCc
Q 040195          141 LYYNNLTGQLPDF--VGNLSALQVIYIRGNSLGGKIPTT-LGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVN--LPNL  215 (472)
Q Consensus       141 l~~~~i~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~--~~~L  215 (472)
                      +++|.+.+..+..  +..+++|++|++++|.+++..+.. +..+++|++|++++|.+....       ...+..  .++|
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~l~~~~L  182 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC-------EEDLLNFQGKHF  182 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC-------TTTSGGGTTCEE
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC-------hhhhhccccccc
Confidence            5555554322222  455555555555555555443433 455555555555555543221       111111  1455


Q ss_pred             cEEEcccccccccCCcc--------CcCCCCCCEEecCCCccccccccccccc---CCCCeEEcCCCcCCCCCCCCcchh
Q 040195          216 KKLCIAENNFVGSIPDS--------LSNASNLELLELAGNQFEGKVSIDFSSL---KNLAVLNLERNNLGIGTANDLGFV  284 (472)
Q Consensus       216 ~~L~l~~~~l~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~  284 (472)
                      +.|++++|.+....+..        +..+++|++|++++|.+.+..+..+...   ++|+.|++++|...........  
T Consensus       183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--  260 (455)
T 3v47_A          183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN--  260 (455)
T ss_dssp             EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS--
T ss_pred             cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh--
Confidence            66666666555433222        2355678888888887776555555443   6778888887765432111100  


Q ss_pred             hhhcccCCCcCCchhhhccccccEEEeecccccCccccccc--CccCcceEeccccccccCcchhhcCCCCCcEEEccCC
Q 040195          285 TFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIR--NLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN  362 (472)
Q Consensus       285 ~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n  362 (472)
                                                     +.......+.  ..++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus       261 -------------------------------~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  309 (455)
T 3v47_A          261 -------------------------------FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN  309 (455)
T ss_dssp             -------------------------------SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             -------------------------------hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC
Confidence                                           0000000111  1244555555555555555555555555555555555


Q ss_pred             cCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCccccccc
Q 040195          363 FLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLL  442 (472)
Q Consensus       363 ~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~  442 (472)
                      .+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+ .|++++|++++..+
T Consensus       310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~  388 (455)
T 3v47_A          310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK-ELALDTNQLKSVPD  388 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC-EEECCSSCCSCCCT
T ss_pred             cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc-EEECCCCccccCCH
Confidence            55544455555555555555555555544445555555555555555555544455555555555 55555555555444


Q ss_pred             ccccCCCCCceEeccCCeeccccC
Q 040195          443 LQVGNLKNLILLDISGNQFSGVIP  466 (472)
Q Consensus       443 ~~l~~~~~L~~L~L~~n~~~~~~p  466 (472)
                      ..+..+++|+.|++++|+++...|
T Consensus       389 ~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          389 GIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             hHhccCCcccEEEccCCCcccCCC
Confidence            445555566666666665555444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-38  Score=318.54  Aligned_cols=393  Identities=21%  Similarity=0.204  Sum_probs=276.8

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV  117 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l  117 (472)
                      +++++|++++|.+.+..+..|.++++|++|++++|.+.+..|++|.++++|++|++++|.+. .+|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            67888888888888777777888888888888888888777888888888888888888887 44444  7888888888


Q ss_pred             ccCcCcc-cCCccccCCCCCcEEEccccCCCCCCCccccCCCCc--cEEEecCCcc--cccccccccc------------
Q 040195          118 ANNKLEG-QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL--QVIYIRGNSL--GGKIPTTLGL------------  180 (472)
Q Consensus       118 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~l~~------------  180 (472)
                      ++|.++. ..|..++++++|++|++++|.+.+   ..+..+++|  ++|++++|.+  .+..+..+..            
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  174 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT  174 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence            8888875 356788888888888888888764   345666777  8888888877  5555554443            


Q ss_pred             --------------CCCccEEEccCCccc-cccccccccChhhhcCCCCcc---------------------------EE
Q 040195          181 --------------LRNLVYLNVNENQFW-YVSSFSGSLPFDILVNLPNLK---------------------------KL  218 (472)
Q Consensus       181 --------------~~~L~~L~l~~~~l~-~~~~~~~~~~~~~~~~~~~L~---------------------------~L  218 (472)
                                    +++|+.+++++|.-. ......+.++  .+..+++|+                           +|
T Consensus       175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L  252 (520)
T 2z7x_B          175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF  252 (520)
T ss_dssp             SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred             Ccchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence                          344445555444200 0000001111  123344444                           44


Q ss_pred             EcccccccccCCccC-----cCCCCCCEEecCCCccccccccccccc---CCCCeEEcCCCcCCCCCCCCcchhhhhccc
Q 040195          219 CIAENNFVGSIPDSL-----SNASNLELLELAGNQFEGKVSIDFSSL---KNLAVLNLERNNLGIGTANDLGFVTFLTNC  290 (472)
Q Consensus       219 ~l~~~~l~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  290 (472)
                      ++++|.+.+.+|..+     ..+++|+.+++++|.+ ......+..+   .+|+.|++++|.+....             
T Consensus       253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-------------  318 (520)
T 2z7x_B          253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-------------  318 (520)
T ss_dssp             EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-------------
T ss_pred             EeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc-------------
Confidence            444444443333333     4444444444444443 1111122222   34555555554443111             


Q ss_pred             CCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEecccccccc--CcchhhcCCCCCcEEEccCCcCcccc
Q 040195          291 SSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHG--TIPDVIGELKNLQILSLFGNFLHGSI  368 (472)
Q Consensus       291 ~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~L~~n~l~~~~  368 (472)
                              .....++++.|++++|.++...+..+..+++|++|++++|.+.+  ..|..+..+++|++|++++|.+.+.+
T Consensus       319 --------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l  390 (520)
T 2z7x_B          319 --------CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE  390 (520)
T ss_dssp             --------CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred             --------chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence                    00233589999999999998778889999999999999999986  45577889999999999999998745


Q ss_pred             cc-chhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccC
Q 040195          369 PS-SLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGN  447 (472)
Q Consensus       369 ~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~  447 (472)
                      +. .+..+++|++|++++|++++.++..+.  ++|+.|++++|.++ .+|..+..+++++ .|++++|+++...+..+..
T Consensus       391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~-~L~L~~N~l~~l~~~~~~~  466 (520)
T 2z7x_B          391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ-ELNVASNQLKSVPDGIFDR  466 (520)
T ss_dssp             GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC-EEECCSSCCCCCCTTTTTT
T ss_pred             ccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCC-EEECCCCcCCccCHHHhcc
Confidence            54 477889999999999999876665543  79999999999999 7898888999999 9999999999544445899


Q ss_pred             CCCCceEeccCCeeccc
Q 040195          448 LKNLILLDISGNQFSGV  464 (472)
Q Consensus       448 ~~~L~~L~L~~n~~~~~  464 (472)
                      +++|+.|++++|+++..
T Consensus       467 l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          467 LTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CTTCCEEECCSSCBCCC
T ss_pred             CCcccEEECcCCCCccc
Confidence            99999999999998743

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-39  Score=337.94  Aligned_cols=415  Identities=21%  Similarity=0.243  Sum_probs=309.6

Q ss_pred             eCCCCCceEEEECCCCccC-cccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcc--cCCC
Q 040195           33 CGHRHQRVTELDLSNQRIG-GVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTN--LSRC  109 (472)
Q Consensus        33 ~~~~~~~l~~L~l~~~~~~-~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--l~~l  109 (472)
                      .....+++++|++++|... ...+..|.++++|++|+|++|.+....|++|.++++|++|++++|.+.+..+..  +.++
T Consensus        43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            3466789999999999544 444788999999999999999998888999999999999999999988655544  8899


Q ss_pred             CCCcEEEcccCcCcccCC-ccccCCCCCcEEEccccCCCCCCCccccCC--CCccEEEecCCccccccccccccC-----
Q 040195          110 SELTHLRVANNKLEGQIP-KEIGSLLKLQTLALYYNNLTGQLPDFVGNL--SALQVIYIRGNSLGGKIPTTLGLL-----  181 (472)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~~-----  181 (472)
                      ++|++|++++|.+....+ ..+.++++|++|++++|.+.+..+..+..+  ++|+.|++++|.+.+..+..+..+     
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  202 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR  202 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence            999999999999875544 578999999999999998887666666554  556666666555544333333322     


Q ss_pred             ---------------------------------------------------------------CCccEEEccCCcccccc
Q 040195          182 ---------------------------------------------------------------RNLVYLNVNENQFWYVS  198 (472)
Q Consensus       182 ---------------------------------------------------------------~~L~~L~l~~~~l~~~~  198 (472)
                                                                                     ++|+.|++++|.+    
T Consensus       203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l----  278 (844)
T 3j0a_A          203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV----  278 (844)
T ss_dssp             TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC----
T ss_pred             cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc----
Confidence                                                                           3444455544443    


Q ss_pred             ccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCC
Q 040195          199 SFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTA  278 (472)
Q Consensus       199 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  278 (472)
                         ..++...+..+++|+.|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.....
T Consensus       279 ---~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  355 (844)
T 3j0a_A          279 ---FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD  355 (844)
T ss_dssp             ---CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred             ---cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence               22334557789999999999999998888889999999999999999987778889999999999999998864332


Q ss_pred             CCcchhhhhcccCCCcCCchhhhc---cccccEEEeecccccCccc---------------------ccccCccCcceEe
Q 040195          279 NDLGFVTFLTNCSSLKLPHSIANL---SSTMTHFYIGGNQILGIIH---------------------FGIRNLVNLIALG  334 (472)
Q Consensus       279 ~~~~~~~~~~~~~~l~~~~~~~~~---~~~l~~l~l~~~~~~~~~~---------------------~~l~~~~~L~~L~  334 (472)
                      ..+.   .+.+++.+.+.......   .++++.+++++|.++.+..                     ..+..+++|+.|+
T Consensus       356 ~~~~---~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~  432 (844)
T 3j0a_A          356 QTFK---FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI  432 (844)
T ss_dssp             SCSC---SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEE
T ss_pred             hhhc---CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceee
Confidence            2111   11122222221111111   0133334444433332211                     1134688999999


Q ss_pred             ccccccccCcch-hhcCCCCCcEEEccCCcCc-----cccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeec
Q 040195          335 MQSNQLHGTIPD-VIGELKNLQILSLFGNFLH-----GSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS  408 (472)
Q Consensus       335 l~~~~i~~~~~~-~~~~~~~L~~L~L~~n~l~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls  408 (472)
                      +++|.+.+..+. .+..+++|+.|++++|.+.     +..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus       433 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  512 (844)
T 3j0a_A          433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN  512 (844)
T ss_dssp             EESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEE
T ss_pred             CCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECC
Confidence            999999865433 4566899999999999986     3345668889999999999999998888889999999999999


Q ss_pred             CCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195          409 HITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG  463 (472)
Q Consensus       409 ~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~  463 (472)
                      +|.+++..+..+.  ++|+ .|++++|++++..|..|   .+|+.|++++|++.-
T Consensus       513 ~N~l~~l~~~~~~--~~L~-~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          513 SNRLTVLSHNDLP--ANLE-ILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC  561 (844)
T ss_dssp             SCCCSSCCCCCCC--SCCC-EEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred             CCCCCccChhhhh--cccc-EEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence            9999854444443  7888 99999999998888765   489999999999863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.3e-39  Score=331.36  Aligned_cols=375  Identities=21%  Similarity=0.277  Sum_probs=311.9

Q ss_pred             CCccEEeccCCcCccCcchhhhcCCCCCEEEc-cCcccCCC---------------------------------------
Q 040195           62 SFLRYINLSDNGFHGEIPQEIGNLYRLEKLEL-SNNSFSGT---------------------------------------  101 (472)
Q Consensus        62 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~---------------------------------------  101 (472)
                      .+++.|+|+++.+.+.+|..++++++|++|+| ++|.+.+.                                       
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57899999999999899999999999999999 66643221                                       


Q ss_pred             -------------------------------------CCcccCCCCCCcEEEcccCcCcc-----------------cCC
Q 040195          102 -------------------------------------IPTNLSRCSELTHLRVANNKLEG-----------------QIP  127 (472)
Q Consensus       102 -------------------------------------~~~~l~~l~~L~~L~l~~~~~~~-----------------~~~  127 (472)
                                                           +|..+.++++|++|++++|.+++                 .+|
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence                                                 66778899999999999999986                 278


Q ss_pred             cccc--CCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCc-ccc-ccccccccCC-------CccEEEccCCcccc
Q 040195          128 KEIG--SLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNS-LGG-KIPTTLGLLR-------NLVYLNVNENQFWY  196 (472)
Q Consensus       128 ~~l~--~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~-------~L~~L~l~~~~l~~  196 (472)
                      ..++  ++++|++|++++|.+.+..|..+..+++|++|++++|. +++ ..|..+..++       +|++|++++|.+. 
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-  561 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-  561 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence            8877  99999999999999888999999999999999999998 876 6776666555       9999999999873 


Q ss_pred             ccccccccCh-hhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCC-CCeEEcCCCcCC
Q 040195          197 VSSFSGSLPF-DILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKN-LAVLNLERNNLG  274 (472)
Q Consensus       197 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~  274 (472)
                            .+|. ..+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+.
T Consensus       562 ------~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          562 ------EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             ------BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred             ------ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence                  4443 35778999999999999998 666 7899999999999999998 66777889998 999999999886


Q ss_pred             CCCCCCcchhhhhcccCCCcCCchhhhcc-ccccEEEeecccccCcccc---ccc--CccCcceEeccccccccCcchhh
Q 040195          275 IGTANDLGFVTFLTNCSSLKLPHSIANLS-STMTHFYIGGNQILGIIHF---GIR--NLVNLIALGMQSNQLHGTIPDVI  348 (472)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~l~~l~l~~~~~~~~~~~---~l~--~~~~L~~L~l~~~~i~~~~~~~~  348 (472)
                      .                   +|..+.... ++|+.|++++|.+....+.   .+.  .+++|+.|++++|.+....+..+
T Consensus       633 ~-------------------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~  693 (876)
T 4ecn_A          633 Y-------------------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF  693 (876)
T ss_dssp             S-------------------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH
T ss_pred             c-------------------CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH
Confidence            2                   222222221 2599999999999765432   222  34589999999999994444455


Q ss_pred             cCCCCCcEEEccCCcCccccccchh--------cccccCeeeccCCcccccCCcCcc--CCCCCceEeecCCcccccCCh
Q 040195          349 GELKNLQILSLFGNFLHGSIPSSLG--------NLTKLANLELSSNSLQGNIPLSVG--NCQNLIGFDASHITLTGALPQ  418 (472)
Q Consensus       349 ~~~~~L~~L~L~~n~l~~~~~~~l~--------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~ls~~~~~~~~~~  418 (472)
                      ..+++|+.|++++|.+. .+|..+.        .+++|++|++++|+++ .+|..+.  .+++|+.|++++|.+.+ +|.
T Consensus       694 ~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~  770 (876)
T 4ecn_A          694 ATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPT  770 (876)
T ss_dssp             HTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred             ccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cch
Confidence            68999999999999998 5554333        2349999999999999 7888887  89999999999999995 898


Q ss_pred             hhhhhcccceEEEcCC------CcccccccccccCCCCCceEeccCCeeccccCCccc
Q 040195          419 QLLSITTLSLYLDLSH------NLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS  470 (472)
Q Consensus       419 ~l~~~~~l~~~L~ls~------n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~  470 (472)
                      .+..+++|+ .|++++      |++.+.+|..|.++++|+.|+|++|.+ +.+|..+.
T Consensus       771 ~l~~L~~L~-~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~  826 (876)
T 4ecn_A          771 QPLNSSQLK-AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT  826 (876)
T ss_dssp             GGGGCTTCC-EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             hhhcCCCCC-EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence            999999999 999976      788888999999999999999999999 68888764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.3e-39  Score=316.58  Aligned_cols=371  Identities=18%  Similarity=0.175  Sum_probs=287.3

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCcc-CcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHG-EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR  116 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~  116 (472)
                      +++++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..|.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            789999999999999888999999999999999998763 4567899999999999999999877788999999999999


Q ss_pred             cccCcCcccCCcc--ccCCCCCcEEEccccCCCCCCCcc-ccCCCCccEEEecCCccccccccccccC--CCccEEEccC
Q 040195          117 VANNKLEGQIPKE--IGSLLKLQTLALYYNNLTGQLPDF-VGNLSALQVIYIRGNSLGGKIPTTLGLL--RNLVYLNVNE  191 (472)
Q Consensus       117 l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~i~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~  191 (472)
                      +++|.+++..+..  +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+..+..+  .+|+.+++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            9999998644443  889999999999999999776765 7899999999999999988777777766  7899999999


Q ss_pred             CccccccccccccCh---hhhcCCCCccEEEcccccccccCCccCcC---CCCCCEEecCCCcccccccccccccCCCCe
Q 040195          192 NQFWYVSSFSGSLPF---DILVNLPNLKKLCIAENNFVGSIPDSLSN---ASNLELLELAGNQFEGKVSIDFSSLKNLAV  265 (472)
Q Consensus       192 ~~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  265 (472)
                      |.+.......  +..   ..+...++|++|++++|.+.+..+..+..   .++|+.|++++|........ ...++.+..
T Consensus       190 n~l~~~~~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~  266 (455)
T 3v47_A          190 ITLQDMNEYW--LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDPDN  266 (455)
T ss_dssp             CBCTTCSTTC--TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCCCT
T ss_pred             Ccccccchhh--ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhccCcc
Confidence            9986654311  111   11235678999999999988766555533   38899999999876532111 111111110


Q ss_pred             EEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcc
Q 040195          266 LNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP  345 (472)
Q Consensus       266 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~  345 (472)
                      ..+.+                              ...++++.+++++|.+....+..+..+++|++|++++|.+.+..+
T Consensus       267 ~~~~~------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  316 (455)
T 3v47_A          267 FTFKG------------------------------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD  316 (455)
T ss_dssp             TTTGG------------------------------GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred             ccccc------------------------------ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence            00000                              011367788888887777777777888888888888888887777


Q ss_pred             hhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcc
Q 040195          346 DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITT  425 (472)
Q Consensus       346 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~  425 (472)
                      ..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++
T Consensus       317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  396 (455)
T 3v47_A          317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS  396 (455)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCc
Confidence            77888888888888888887666777788888888888888888767777888888888888888887544445677788


Q ss_pred             cceEEEcCCCccccccc
Q 040195          426 LSLYLDLSHNLLNGSLL  442 (472)
Q Consensus       426 l~~~L~ls~n~l~~~~~  442 (472)
                      |+ .|++++|++++..|
T Consensus       397 L~-~L~l~~N~l~~~~~  412 (455)
T 3v47_A          397 LQ-KIWLHTNPWDCSCP  412 (455)
T ss_dssp             CC-EEECCSSCBCCCTT
T ss_pred             cc-EEEccCCCcccCCC
Confidence            88 88888888876544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.9e-39  Score=323.86  Aligned_cols=422  Identities=18%  Similarity=0.175  Sum_probs=318.8

Q ss_pred             cccccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCc
Q 040195           25 LCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPT  104 (472)
Q Consensus        25 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~  104 (472)
                      .|.|.++ |          +.+++.++..... +  .++|++|++++|.+....+..|.++++|++|++++|.+.+..+.
T Consensus         3 ~C~~~~~-c----------~~~~~~l~~ip~~-~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            3 SCDASGV-C----------DGRSRSFTSIPSG-L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             EECTTSE-E----------ECTTSCCSSCCSC-C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCce-E----------ECCCCcccccccc-C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            4777665 5          5566666655443 2  37999999999999988888999999999999999999977788


Q ss_pred             ccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCC-CCCccccCCCCccEEEecCCcccccc-ccccccCC
Q 040195          105 NLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG-QLPDFVGNLSALQVIYIRGNSLGGKI-PTTLGLLR  182 (472)
Q Consensus       105 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~  182 (472)
                      .|..+++|++|++++|.+++..+..++++++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+.. +..+..++
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            89999999999999999997666679999999999999999985 34677899999999999999843344 46789999


Q ss_pred             CccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccc---cccccc
Q 040195          183 NLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKV---SIDFSS  259 (472)
Q Consensus       183 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~l~~  259 (472)
                      +|++|++++|.+...       ....+..+++|++|+++++.+.......+..+++|+.|++++|.+++..   ......
T Consensus       149 ~L~~L~L~~n~l~~~-------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  221 (549)
T 2z81_A          149 SLNELEIKALSLRNY-------QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV  221 (549)
T ss_dssp             EEEEEEEEETTCCEE-------CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC
T ss_pred             ccCeeeccCCccccc-------ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhh
Confidence            999999999987432       3345668899999999999876433333457899999999999987542   222345


Q ss_pred             cCCCCeEEcCCCcCCCCCCCCcch-hhhhccc------------------------------CCCc-----CCc------
Q 040195          260 LKNLAVLNLERNNLGIGTANDLGF-VTFLTNC------------------------------SSLK-----LPH------  297 (472)
Q Consensus       260 l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~------------------------------~~l~-----~~~------  297 (472)
                      +++|+.|++++|.+.......+.. .....++                              +.+.     ++.      
T Consensus       222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~  301 (549)
T 2z81_A          222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD  301 (549)
T ss_dssp             CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCC
T ss_pred             hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhccc
Confidence            789999999999775321111000 0000000                              0000     010      


Q ss_pred             --hhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcc---hhhcCCCCCcEEEccCCcCccccc--c
Q 040195          298 --SIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP---DVIGELKNLQILSLFGNFLHGSIP--S  370 (472)
Q Consensus       298 --~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~--~  370 (472)
                        .......+++.++++++.+..+....+..+++|++|++++|.+.+..+   ..++.+++|++|++++|.+++..+  .
T Consensus       302 l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  381 (549)
T 2z81_A          302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE  381 (549)
T ss_dssp             CCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHH
T ss_pred             chhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchh
Confidence              012233578899999998876555445679999999999999987654   346788999999999999985432  4


Q ss_pred             chhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhh------------------hhhcccceEEEc
Q 040195          371 SLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQL------------------LSITTLSLYLDL  432 (472)
Q Consensus       371 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l------------------~~~~~l~~~L~l  432 (472)
                      .+..+++|++|++++|+++ .+|..+..+++|++|++++|.+. .++..+                  ..+++|+ .|++
T Consensus       382 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~-~L~L  458 (549)
T 2z81_A          382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQ-ELYI  458 (549)
T ss_dssp             HGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCC-EEEC
T ss_pred             hhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhc-EEEC
Confidence            5788999999999999999 68888888899999999999876 343322                  2466777 8888


Q ss_pred             CCCcccccccccccCCCCCceEeccCCeeccccCCccccC
Q 040195          433 SHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSIC  472 (472)
Q Consensus       433 s~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~  472 (472)
                      ++|+++ .+|. ...+++|+.|+|++|++++..|..|+++
T Consensus       459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  496 (549)
T 2z81_A          459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL  496 (549)
T ss_dssp             CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred             CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcC
Confidence            888887 4454 4668889999999999888777766643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.9e-37  Score=316.60  Aligned_cols=451  Identities=20%  Similarity=0.215  Sum_probs=308.4

Q ss_pred             CCCCCCCCCCCCCCCCCC----cccc----cceeeCC---------CCCceEEEECCCCccCcccCccccCCCCccEEec
Q 040195            7 PHQHDPSGVTSSWNNTIN----LCQW----MGVTCGH---------RHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINL   69 (472)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~---------~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L   69 (472)
                      .|++|+...++.|+...+    .|.+    ..+.|..         -++++++|++++|.++...+..|.++++|++|+|
T Consensus         4 ~~~~~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~L   83 (635)
T 4g8a_A            4 WDYKDDDDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL   83 (635)
T ss_dssp             ---------------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccCCCcchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEEC
Confidence            467777777777765443    2332    2345642         1257899999999999998899999999999999


Q ss_pred             cCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCC
Q 040195           70 SDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQ  149 (472)
Q Consensus        70 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~  149 (472)
                      ++|.+..+.+++|.++++|++|+|++|.+....+..|.++++|++|++++|.++...+..|+++++|++|++++|.+...
T Consensus        84 s~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~  163 (635)
T 4g8a_A           84 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF  163 (635)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred             CCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence            99999988888999999999999999999866667899999999999999999966666799999999999999998753


Q ss_pred             -CCccccCCCCccEEEecCCccccccccccccCCCc----cEEEccCCccccccccc-----------------cccCh-
Q 040195          150 -LPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL----VYLNVNENQFWYVSSFS-----------------GSLPF-  206 (472)
Q Consensus       150 -~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L----~~L~l~~~~l~~~~~~~-----------------~~~~~-  206 (472)
                       .|..+..+++|++|++++|.+++..+..+..+.++    ..++++.|.+..+....                 ..+.. 
T Consensus       164 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~  243 (635)
T 4g8a_A          164 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT  243 (635)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHH
T ss_pred             CCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccch
Confidence             57788899999999999999886666655544332    24555555432211100                 00000 


Q ss_pred             --------------------------------------------------------hhhcCCCCccEEEcccccccccCC
Q 040195          207 --------------------------------------------------------DILVNLPNLKKLCIAENNFVGSIP  230 (472)
Q Consensus       207 --------------------------------------------------------~~~~~~~~L~~L~l~~~~l~~~~~  230 (472)
                                                                              ..+....+++.+.+.++.+...  
T Consensus       244 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--  321 (635)
T 4g8a_A          244 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--  321 (635)
T ss_dssp             HHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--
T ss_pred             hhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--
Confidence                                                                    0011112233333333322211  


Q ss_pred             ccCcCCCCCCEEecCCCcccccc-------------------cccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccC
Q 040195          231 DSLSNASNLELLELAGNQFEGKV-------------------SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS  291 (472)
Q Consensus       231 ~~l~~~~~L~~L~l~~~~~~~~~-------------------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  291 (472)
                      ..+.....++.|++.++.+....                   ......+++|+.+++++|.+...+...... ....+++
T Consensus       322 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~  400 (635)
T 4g8a_A          322 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD-FGTISLK  400 (635)
T ss_dssp             GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHH-HSCSCCC
T ss_pred             cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccch-hhhhhhh
Confidence            11233344555555444332211                   112345778888888888764321111000 0111111


Q ss_pred             CCc--------CCchhhhccccccEEEeecccccCcc-cccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCC
Q 040195          292 SLK--------LPHSIANLSSTMTHFYIGGNQILGII-HFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN  362 (472)
Q Consensus       292 ~l~--------~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n  362 (472)
                      .+.        .+..+ ...++++.+++..+...... ...+..+++++.++++.|.+....+..+..+++|+.|++++|
T Consensus       401 ~L~~~~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N  479 (635)
T 4g8a_A          401 YLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  479 (635)
T ss_dssp             EEECCSCSEEEECSCC-TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             hhhccccccccccccc-cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence            111        11111 22347888888877666543 346778899999999999998888888888999999999999


Q ss_pred             cC-ccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccc
Q 040195          363 FL-HGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSL  441 (472)
Q Consensus       363 ~l-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~  441 (472)
                      .+ ....+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+ .|++++|++++..
T Consensus       480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~-~L~Ls~N~l~~~~  558 (635)
T 4g8a_A          480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ-VLDYSLNHIMTSK  558 (635)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC-EEECTTSCCCBCC
T ss_pred             ccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC-EEECCCCcCCCCC
Confidence            75 445777888999999999999999988888899999999999999999866677788899999 9999999999888


Q ss_pred             cccccCC-CCCceEeccCCeec
Q 040195          442 LLQVGNL-KNLILLDISGNQFS  462 (472)
Q Consensus       442 ~~~l~~~-~~L~~L~L~~n~~~  462 (472)
                      |+.+..+ ++|+.|+|++|+++
T Consensus       559 ~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          559 KQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             SSCTTCCCTTCCEEECTTCCBC
T ss_pred             HHHHHhhhCcCCEEEeeCCCCc
Confidence            8888887 68999999999886

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.9e-37  Score=308.97  Aligned_cols=389  Identities=18%  Similarity=0.158  Sum_probs=242.3

Q ss_pred             EEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccC
Q 040195           41 TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN  120 (472)
Q Consensus        41 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~  120 (472)
                      ++++++++.++.... .+  .++|++|++++|.+....+..|.++++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus        34 ~~l~ls~~~L~~ip~-~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTHVPK-DL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCSCCT-TS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCccCCC-CC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            566666666654332 22  156666666666666555556666666666666666666555555666666666666666


Q ss_pred             cCcccCCccccCCCCCcEEEccccCCCCC-CCccccCCCCccEEEecCCccccccccccccCCCc--cEEEccCCcc--c
Q 040195          121 KLEGQIPKEIGSLLKLQTLALYYNNLTGQ-LPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL--VYLNVNENQF--W  195 (472)
Q Consensus       121 ~~~~~~~~~l~~l~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~l--~  195 (472)
                      .++ .+|..  .+++|++|++++|.+.+. .|..+..+++|++|++++|.++..   .+..+++|  ++|++++|.+  .
T Consensus       111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~  184 (562)
T 3a79_B          111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK  184 (562)
T ss_dssp             CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred             cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence            665 33433  566666666666666532 235566666666666666665532   23333333  6666665554  1


Q ss_pred             cccc--c-----------------ccccChhh----------------------------hcCCC---------------
Q 040195          196 YVSS--F-----------------SGSLPFDI----------------------------LVNLP---------------  213 (472)
Q Consensus       196 ~~~~--~-----------------~~~~~~~~----------------------------~~~~~---------------  213 (472)
                      ....  +                 .+.++...                            +...+               
T Consensus       185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~  264 (562)
T 3a79_B          185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK  264 (562)
T ss_dssp             SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred             ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence            1100  0                 00000011                            11122               


Q ss_pred             ------------CccEEEcccccccccCCccC-----cCCCCCCEEecCCCccccccccccc---ccCCCCeEEcCCCcC
Q 040195          214 ------------NLKKLCIAENNFVGSIPDSL-----SNASNLELLELAGNQFEGKVSIDFS---SLKNLAVLNLERNNL  273 (472)
Q Consensus       214 ------------~L~~L~l~~~~l~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~  273 (472)
                                  +|++|++++|.+.+.+|..+     ..++.|+.+++..+.+ ......+.   ...+|++|++++|.+
T Consensus       265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~  343 (562)
T 3a79_B          265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPF  343 (562)
T ss_dssp             HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred             HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCc
Confidence                        44444444444443333332     2222222222222222 00001111   114566666666655


Q ss_pred             CCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccC--cchhhcCC
Q 040195          274 GIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGT--IPDVIGEL  351 (472)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~~  351 (472)
                      .....                     ....++++.|++++|.++...+..+..+++|++|++++|.+.+.  .|..+..+
T Consensus       344 ~~~~~---------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l  402 (562)
T 3a79_B          344 IHMVC---------------------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM  402 (562)
T ss_dssp             CCCCC---------------------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC
T ss_pred             ccccC---------------------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCC
Confidence            32110                     02234899999999999988888899999999999999999863  34668899


Q ss_pred             CCCcEEEccCCcCcccccc-chhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEE
Q 040195          352 KNLQILSLFGNFLHGSIPS-SLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYL  430 (472)
Q Consensus       352 ~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L  430 (472)
                      ++|++|++++|.+.+.++. .+..+++|++|++++|++++.++..+.  ++|++|++++|.++ .+|..+..+++++ .|
T Consensus       403 ~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~-~L  478 (562)
T 3a79_B          403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQ-EL  478 (562)
T ss_dssp             TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCS-EE
T ss_pred             CCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCC-EE
Confidence            9999999999999874444 577889999999999999876665443  79999999999998 7888888999999 99


Q ss_pred             EcCCCcccccccccccCCCCCceEeccCCeeccc
Q 040195          431 DLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV  464 (472)
Q Consensus       431 ~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~  464 (472)
                      ++++|+++...+..+..+++|+.|++++|++...
T Consensus       479 ~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          479 NVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             ECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             ECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            9999999954444489999999999999998743

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=304.26  Aligned_cols=414  Identities=20%  Similarity=0.193  Sum_probs=313.3

Q ss_pred             EEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccC
Q 040195           41 TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN  120 (472)
Q Consensus        41 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~  120 (472)
                      ++++++++.++... ..+.  ++|++|++++|.+....+..|.++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVP-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCC-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccccc-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            57999999998654 3343  89999999999999888889999999999999999999777889999999999999999


Q ss_pred             cCcccCCccccCCCCCcEEEccccCCCC-CCCccccCCCCccEEEecCCccccccccccccCCCc--cEEEccCCcc--c
Q 040195          121 KLEGQIPKEIGSLLKLQTLALYYNNLTG-QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL--VYLNVNENQF--W  195 (472)
Q Consensus       121 ~~~~~~~~~l~~l~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~l--~  195 (472)
                      .++ .+|..  .+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++   ..+..+++|  ++|++++|.+  .
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            998 45555  89999999999999986 367899999999999999999875   456777788  9999999987  2


Q ss_pred             cc-----ccc--------------ccccChhhhcCCCCccEEEccccc-------ccccCCccCcCCCCCCEEecCCCcc
Q 040195          196 YV-----SSF--------------SGSLPFDILVNLPNLKKLCIAENN-------FVGSIPDSLSNASNLELLELAGNQF  249 (472)
Q Consensus       196 ~~-----~~~--------------~~~~~~~~~~~~~~L~~L~l~~~~-------l~~~~~~~l~~~~~L~~L~l~~~~~  249 (472)
                      ..     ...              .+.++...+..+++|+.+++++|.       +.+.++ .+..+++|+.|+++++.+
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence            11     110              011222234456778888887775       443333 466777778877777766


Q ss_pred             cccccccc---cccCCCCeEEcCCCcCCCCCCCCc-ch-hhhhcccCCC-------cCC-chhhhc--cccccEEEeecc
Q 040195          250 EGKVSIDF---SSLKNLAVLNLERNNLGIGTANDL-GF-VTFLTNCSSL-------KLP-HSIANL--SSTMTHFYIGGN  314 (472)
Q Consensus       250 ~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~-~~-~~~~~~~~~l-------~~~-~~~~~~--~~~l~~l~l~~~  314 (472)
                      .+.....+   ...++|++|++++|.+.......+ .. ...+..++.+       .+| ..+...  ..+++.|+++++
T Consensus       233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n  312 (520)
T 2z7x_B          233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT  312 (520)
T ss_dssp             EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS
T ss_pred             CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC
Confidence            54322221   124578888888887652111111 00 0011111111       233 122222  136999999999


Q ss_pred             cccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCcc--ccccchhcccccCeeeccCCcccccC
Q 040195          315 QILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG--SIPSSLGNLTKLANLELSSNSLQGNI  392 (472)
Q Consensus       315 ~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~l~~~~~~~~~  392 (472)
                      .+.....  ...+++|++|++++|.+.+..|..++.+++|++|++++|.+.+  ..+..+..+++|++|++++|.+++.+
T Consensus       313 ~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l  390 (520)
T 2z7x_B          313 RMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE  390 (520)
T ss_dssp             CCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred             ccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence            8876432  2688999999999999998888899999999999999999986  45677899999999999999999756


Q ss_pred             Cc-CccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCc-cc
Q 040195          393 PL-SVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVT-LS  470 (472)
Q Consensus       393 ~~-~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~-~~  470 (472)
                      +. .+..+++|+.|++++|.+++..+..+.  ++++ .|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. |.
T Consensus       391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~-~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~  465 (520)
T 2z7x_B          391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK-VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFD  465 (520)
T ss_dssp             GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC-EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             ccchhccCccCCEEECcCCCCCcchhhhhc--ccCC-EEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhc
Confidence            55 478899999999999999876666554  6788 9999999999 67777779999999999999998 56665 55


Q ss_pred             c
Q 040195          471 I  471 (472)
Q Consensus       471 ~  471 (472)
                      +
T Consensus       466 ~  466 (520)
T 2z7x_B          466 R  466 (520)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.3e-35  Score=289.22  Aligned_cols=345  Identities=28%  Similarity=0.381  Sum_probs=239.8

Q ss_pred             CCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195           37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR  116 (472)
Q Consensus        37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~  116 (472)
                      .++++.|++.++.+....  .+..+++|++|++++|.+....+  +.++++|++|++++|.+.+..+  +.++++|++|+
T Consensus        45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            367888888888876542  47788888888888888775443  7888888888888888874433  78888888888


Q ss_pred             cccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcccc
Q 040195          117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY  196 (472)
Q Consensus       117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  196 (472)
                      +++|.++.. + .+..+++|++|++++|.+.+ .+ .+..+++|++|++++ .+.+  ...+..+++|++|++++|.+..
T Consensus       119 L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~--~~~~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          119 LFNNQITDI-D-PLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             CCSSCCCCC-G-GGTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCC--CGGGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCC-h-HHcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccC--chhhccCCCCCEEECcCCcCCC
Confidence            888888743 3 37788888888888888874 33 477888888888863 3332  2337778888888888887644


Q ss_pred             ccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCC
Q 040195          197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG  276 (472)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  276 (472)
                      +.         .+..+++|++|++++|.+.+..+  ++.+++|+.|++++|.+++.  ..+..+++|++|++++|.+...
T Consensus       192 ~~---------~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~  258 (466)
T 1o6v_A          192 IS---------VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL  258 (466)
T ss_dssp             CG---------GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             Ch---------hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc
Confidence            32         24567888888888888775443  66778888888888877643  3567778888888888776521


Q ss_pred             CCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcE
Q 040195          277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQI  356 (472)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  356 (472)
                      .                   .  ....++++.|++++|.++...+  +..+++|+.|++++|.+.+..+  +..+++|++
T Consensus       259 ~-------------------~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  313 (466)
T 1o6v_A          259 A-------------------P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY  313 (466)
T ss_dssp             G-------------------G--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred             h-------------------h--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence            1                   0  1112367777777777665433  6667777777777777664433  566677777


Q ss_pred             EEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCc
Q 040195          357 LSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNL  436 (472)
Q Consensus       357 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~  436 (472)
                      |++++|.+.+..+  +..+++|++|++++|++++.  ..+..+++|+.|++++|++.+..|  +..++.++ .|++++|+
T Consensus       314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~-~L~l~~n~  386 (466)
T 1o6v_A          314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT-QLGLNDQA  386 (466)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC-EEECCCEE
T ss_pred             EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC-EEeccCCc
Confidence            7777777665443  55667777777777776643  356667777777777777764433  56666776 77777776


Q ss_pred             ccc
Q 040195          437 LNG  439 (472)
Q Consensus       437 l~~  439 (472)
                      +++
T Consensus       387 ~~~  389 (466)
T 1o6v_A          387 WTN  389 (466)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2e-34  Score=277.29  Aligned_cols=349  Identities=17%  Similarity=0.151  Sum_probs=208.2

Q ss_pred             CCCCCCCCCccc-ccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEcc
Q 040195           16 TSSWNNTINLCQ-WMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELS   94 (472)
Q Consensus        16 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~   94 (472)
                      ++.|....+||. |.+..|..     +.+.+............-..+.++++|+++++.+....+..+..+++|++|+++
T Consensus         3 ~~~~~~~~~C~~~~~~~~c~~-----~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~   77 (390)
T 3o6n_A            3 VKPRQPEYKCIDSNLQYDCVF-----YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN   77 (390)
T ss_dssp             ----CCEECBCC------EEE-----ESCEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred             cCCCCCccceehhhhhhccce-----eeeeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence            578988889987 33344421     112222211111111112346889999999998886666668999999999999


Q ss_pred             CcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccccc
Q 040195           95 NNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKI  174 (472)
Q Consensus        95 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~  174 (472)
                      +|.+.+..+..|..+++|++|++++|.++...+..+.++++|++|++++|.+....+..+..+++|++|++++|.+++..
T Consensus        78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A           78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  157 (390)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence            99988777778899999999999999998777777889999999999999988544455678889999999998888666


Q ss_pred             ccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccc
Q 040195          175 PTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVS  254 (472)
Q Consensus       175 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  254 (472)
                      +..+..+++|++|++++|.+..++          +..+++|+.|++++|.+..     +...++|++|++++|.+.....
T Consensus       158 ~~~~~~l~~L~~L~l~~n~l~~~~----------~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~  222 (390)
T 3o6n_A          158 DDTFQATTSLQNLQLSSNRLTHVD----------LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG  222 (390)
T ss_dssp             TTTTSSCTTCCEEECCSSCCSBCC----------GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEEC
T ss_pred             hhhccCCCCCCEEECCCCcCCccc----------cccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccc
Confidence            667788888888888888763321          2234555666665555442     1223344455554444432211


Q ss_pred             ccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEe
Q 040195          255 IDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALG  334 (472)
Q Consensus       255 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~  334 (472)
                         ...++                                           ++.|++++|.++..  ..+..+++|++|+
T Consensus       223 ---~~~~~-------------------------------------------L~~L~l~~n~l~~~--~~l~~l~~L~~L~  254 (390)
T 3o6n_A          223 ---PVNVE-------------------------------------------LTILKLQHNNLTDT--AWLLNYPGLVEVD  254 (390)
T ss_dssp             ---CCCSS-------------------------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             ---ccccc-------------------------------------------ccEEECCCCCCccc--HHHcCCCCccEEE
Confidence               11123                                           33333333333322  2344555666666


Q ss_pred             ccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccc
Q 040195          335 MQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTG  414 (472)
Q Consensus       335 l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~  414 (472)
                      +++|.+.+..+..+..+++|++|++++|++++ ++..+..+++|++|++++|+++ .++..+..+++|+.|++++|++.+
T Consensus       255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~  332 (390)
T 3o6n_A          255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  332 (390)
T ss_dssp             CCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             CCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence            66666655555555556666666666665552 3333344555555555555555 344444455555555555555542


Q ss_pred             cCChhhhhhcccceEEEcCCCccc
Q 040195          415 ALPQQLLSITTLSLYLDLSHNLLN  438 (472)
Q Consensus       415 ~~~~~l~~~~~l~~~L~ls~n~l~  438 (472)
                       ++  +..+++++ .|++++|++.
T Consensus       333 -~~--~~~~~~L~-~L~l~~N~~~  352 (390)
T 3o6n_A          333 -LK--LSTHHTLK-NLTLSHNDWD  352 (390)
T ss_dssp             -CC--CCTTCCCS-EEECCSSCEE
T ss_pred             -eC--chhhccCC-EEEcCCCCcc
Confidence             22  34444555 5555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=9.9e-35  Score=292.74  Aligned_cols=388  Identities=20%  Similarity=0.239  Sum_probs=287.5

Q ss_pred             CCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEE
Q 040195           61 LSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA  140 (472)
Q Consensus        61 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  140 (472)
                      +...++++++++.++. +|..+.  ++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|.++++|++|+
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            3345899999999884 555443  8999999999999977778899999999999999999977788999999999999


Q ss_pred             ccccCCCCCCCccccCCCCccEEEecCCccccc-cccccccCCCccEEEccCCccccccccccccChhhhcCCCCc--cE
Q 040195          141 LYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGK-IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNL--KK  217 (472)
Q Consensus       141 l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L--~~  217 (472)
                      +++|.++ .+|..  .+++|++|++++|.+++. .+..++.+++|++|++++|.+...       .   +..+++|  +.
T Consensus       107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-------~---~~~l~~L~L~~  173 (562)
T 3a79_B          107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-------D---LLPVAHLHLSC  173 (562)
T ss_dssp             CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-------T---TGGGTTSCEEE
T ss_pred             CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-------c---hhhhhhceeeE
Confidence            9999998 56665  899999999999999863 357899999999999999987432       1   2234455  99


Q ss_pred             EEcccccc--cccCCccCcC--------------------------CCCCCEEecCCCcc--------------------
Q 040195          218 LCIAENNF--VGSIPDSLSN--------------------------ASNLELLELAGNQF--------------------  249 (472)
Q Consensus       218 L~l~~~~l--~~~~~~~l~~--------------------------~~~L~~L~l~~~~~--------------------  249 (472)
                      |++++|.+  ++..+..+..                          +++|+.+++++|..                    
T Consensus       174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~  253 (562)
T 3a79_B          174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN  253 (562)
T ss_dssp             EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred             EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence            99999988  5555544443                          34555666655521                    


Q ss_pred             --------cccccc---cccccCCCCeEEcCCCcCCCCCCCCc-ch-hhhhcccC-------CCcCCc-hhhhc--cccc
Q 040195          250 --------EGKVSI---DFSSLKNLAVLNLERNNLGIGTANDL-GF-VTFLTNCS-------SLKLPH-SIANL--SSTM  306 (472)
Q Consensus       250 --------~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~-~~-~~~~~~~~-------~l~~~~-~~~~~--~~~l  306 (472)
                              .+....   .....++|++|++++|.+........ .. ...+..+.       .+.+|. .+...  ..++
T Consensus       254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L  333 (562)
T 3a79_B          254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI  333 (562)
T ss_dssp             EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC
T ss_pred             EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcc
Confidence                    000000   00112377888888887653211110 00 00011000       112231 11111  2369


Q ss_pred             cEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccc--cccchhcccccCeeecc
Q 040195          307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS--IPSSLGNLTKLANLELS  384 (472)
Q Consensus       307 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~~~~L~~L~l~  384 (472)
                      +.++++++.+.....  ...+++|++|++++|.+.+..+..+..+++|++|++++|.+++.  .+..+..+++|++|+++
T Consensus       334 ~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          334 KMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             SEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             eEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence            999999998865432  26789999999999999988888999999999999999999863  45678899999999999


Q ss_pred             CCcccccCCc-CccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195          385 SNSLQGNIPL-SVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG  463 (472)
Q Consensus       385 ~~~~~~~~~~-~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~  463 (472)
                      +|.+++.++. .+..+++|++|++++|.+++..+..+.  ++++ .|++++|+++ .+|..+..+++|+.|+|++|.++ 
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~-~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-  486 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVK-VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-  486 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCS-EEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCC-EEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-
Confidence            9999974554 578899999999999999866655443  6788 9999999999 56766679999999999999998 


Q ss_pred             ccCCc-ccc
Q 040195          464 VIPVT-LSI  471 (472)
Q Consensus       464 ~~p~~-~~~  471 (472)
                      .+|.. |++
T Consensus       487 ~l~~~~~~~  495 (562)
T 3a79_B          487 SVPDGVFDR  495 (562)
T ss_dssp             CCCTTSTTT
T ss_pred             CCCHHHHhc
Confidence            56665 554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.5e-33  Score=289.09  Aligned_cols=422  Identities=20%  Similarity=0.157  Sum_probs=294.6

Q ss_pred             EEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCc
Q 040195           42 ELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNK  121 (472)
Q Consensus        42 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~  121 (472)
                      +++.++..++.++. .+.  +++++|+|++|.++...+.+|.++++|++|+|++|.+....+.+|.++++|++|++++|+
T Consensus        35 ~~~c~~~~l~~vP~-~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFYKIPD-NLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCSSCCS-SSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcCccCC-CCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            56677666655433 222  479999999999998888899999999999999999997777889999999999999999


Q ss_pred             CcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccc-cccccccCCCccEEEccCCcccccccc
Q 040195          122 LEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGK-IPTTLGLLRNLVYLNVNENQFWYVSSF  200 (472)
Q Consensus       122 ~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~  200 (472)
                      ++...+..|.++++|++|++++|.+++..+..|+.+++|++|++++|.++.. .+..+..+++|++|++++|.+..+...
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            9966667899999999999999999977677899999999999999998753 467788999999999999988654320


Q ss_pred             c---------------------cccChhhhcCCCCccEEEcccccccc-c------------------------------
Q 040195          201 S---------------------GSLPFDILVNLPNLKKLCIAENNFVG-S------------------------------  228 (472)
Q Consensus       201 ~---------------------~~~~~~~~~~~~~L~~L~l~~~~l~~-~------------------------------  228 (472)
                      .                     ..++...+ ....+..+++.++.... .                              
T Consensus       192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~  270 (635)
T 4g8a_A          192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF  270 (635)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             cccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence            0                     00000000 11122333333321100 0                              


Q ss_pred             ---------------------------CCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCc
Q 040195          229 ---------------------------IPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDL  281 (472)
Q Consensus       229 ---------------------------~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  281 (472)
                                                 ....+....+++.+.+.++.+..  ...+.....++.|++.++.+.......+
T Consensus       271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l  348 (635)
T 4g8a_A          271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKL  348 (635)
T ss_dssp             CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBC
T ss_pred             cccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCcccc
Confidence                                       00011112233334443333321  1223445667777777776543322211


Q ss_pred             chhhhh----------------cccCCCcCC----------chhhhccccccEEEeecccccCcccccccCccCcceEec
Q 040195          282 GFVTFL----------------TNCSSLKLP----------HSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGM  335 (472)
Q Consensus       282 ~~~~~~----------------~~~~~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l  335 (472)
                      .....+                .+++.+.+.          ........+++.+++..+..... ...+..+++|+.+++
T Consensus       349 ~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l  427 (635)
T 4g8a_A          349 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDF  427 (635)
T ss_dssp             TTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEEC
T ss_pred             hhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhh
Confidence            111100                000000000          00001112344444444433322 234556777888888


Q ss_pred             cccccccCcc-hhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccc-ccCCcCccCCCCCceEeecCCccc
Q 040195          336 QSNQLHGTIP-DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ-GNIPLSVGNCQNLIGFDASHITLT  413 (472)
Q Consensus       336 ~~~~i~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~ls~~~~~  413 (472)
                      +++......+ ..+..+++++.++++.|.+....+..+..++.|+.|++++|.+. ...+..+..+++|+.|++++|+++
T Consensus       428 ~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~  507 (635)
T 4g8a_A          428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE  507 (635)
T ss_dssp             TTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             hhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC
Confidence            7776554433 46778899999999999998888888899999999999999865 346788999999999999999999


Q ss_pred             ccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCcccc
Q 040195          414 GALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSI  471 (472)
Q Consensus       414 ~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~  471 (472)
                      +..|..|.++++|+ .|+|++|++++..+..|.++++|++|+|++|++++..|..|.+
T Consensus       508 ~l~~~~f~~l~~L~-~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  564 (635)
T 4g8a_A          508 QLSPTAFNSLSSLQ-VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  564 (635)
T ss_dssp             EECTTTTTTCTTCC-EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred             CcChHHHcCCCCCC-EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence            77788899999999 9999999999888899999999999999999999999988764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-34  Score=283.44  Aligned_cols=319  Identities=21%  Similarity=0.203  Sum_probs=225.8

Q ss_pred             EEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCc
Q 040195           42 ELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNK  121 (472)
Q Consensus        42 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~  121 (472)
                      .++.++..+...... +  .+++++|++++|.+....+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus        15 ~v~c~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           15 AVLCHRKRFVAVPEG-I--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             EEECCSCCCSSCCSC-C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCcCCCC-C--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            566666666544332 2  2577888888888877667778888888888888888776667778888888888888888


Q ss_pred             CcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccc
Q 040195          122 LEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFS  201 (472)
Q Consensus       122 ~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  201 (472)
                      ++...+..|.++++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+       
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------  164 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-------  164 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-------
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-------
Confidence            8755555677788888888888888766677777888888888888887766667777888888888888876       


Q ss_pred             cccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCc
Q 040195          202 GSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDL  281 (472)
Q Consensus       202 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  281 (472)
                      ..++...+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+..+.......+|++|++++|.+..      
T Consensus       165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------  238 (477)
T 2id5_A          165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA------  238 (477)
T ss_dssp             SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS------
T ss_pred             cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc------
Confidence            34455666777888888888888777666677778888888888776654544444445577777777776642      


Q ss_pred             chhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccC
Q 040195          282 GFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFG  361 (472)
Q Consensus       282 ~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~  361 (472)
                                   ++.......++|+.|++++|.++...+..|..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus       239 -------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (477)
T 2id5_A          239 -------------VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG  305 (477)
T ss_dssp             -------------CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred             -------------cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence                         2222222223666677776666666666666777777777777777766666677777777777777


Q ss_pred             CcCccccccchhcccccCeeeccCCccc
Q 040195          362 NFLHGSIPSSLGNLTKLANLELSSNSLQ  389 (472)
Q Consensus       362 n~l~~~~~~~l~~~~~L~~L~l~~~~~~  389 (472)
                      |.+++..+..|..+++|++|++++|++.
T Consensus       306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          306 NQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             SCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             CcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            7776555556666777777777777665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.9e-34  Score=282.85  Aligned_cols=321  Identities=22%  Similarity=0.192  Sum_probs=245.4

Q ss_pred             CEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCC
Q 040195           89 EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGN  168 (472)
Q Consensus        89 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~  168 (472)
                      +.++.++..+. .+|..+  .+.+++|++++|.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            57888887776 556554  368999999999998777788999999999999999998777888899999999999999


Q ss_pred             ccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCc
Q 040195          169 SLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ  248 (472)
Q Consensus       169 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~  248 (472)
                      .++...+..|..+++|++|++++|.+.       .++...+..+++|++|++++|.+....+..|..+++|++|++++|.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  163 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIV-------ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN  163 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCC-------EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred             cCCccCcccccCCCCCCEEECCCCccc-------cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence            988665567788999999999999873       3334556788899999999998887777788888999999999988


Q ss_pred             ccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCcc
Q 040195          249 FEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLV  328 (472)
Q Consensus       249 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~  328 (472)
                      ++......+..+++|+.|++++|.+......                   .....++++.|+++++......+.......
T Consensus       164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  224 (477)
T 2id5_A          164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDY-------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYGL  224 (477)
T ss_dssp             CSSCCHHHHTTCTTCCEEEEESCCCCEECTT-------------------CSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred             CcccChhHhcccCCCcEEeCCCCcCcEeChh-------------------hcccCcccceeeCCCCccccccCcccccCc
Confidence            8866666788888888888888877532111                   111123677888887766655555455556


Q ss_pred             CcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeec
Q 040195          329 NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS  408 (472)
Q Consensus       329 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls  408 (472)
                      +|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  304 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS  304 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence            78888888887775555567777888888888888776666677777888888888888777667777778888888888


Q ss_pred             CCcccccCChhhhhhcccceEEEcCCCcccc
Q 040195          409 HITLTGALPQQLLSITTLSLYLDLSHNLLNG  439 (472)
Q Consensus       409 ~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~  439 (472)
                      +|.+++..+..+..+++|+ .|++++|++..
T Consensus       305 ~N~l~~~~~~~~~~l~~L~-~L~l~~N~l~c  334 (477)
T 2id5_A          305 GNQLTTLEESVFHSVGNLE-TLILDSNPLAC  334 (477)
T ss_dssp             SSCCSCCCGGGBSCGGGCC-EEECCSSCEEC
T ss_pred             CCcCceeCHhHcCCCcccC-EEEccCCCccC
Confidence            8877744444566677777 78888887763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.4e-33  Score=273.75  Aligned_cols=348  Identities=17%  Similarity=0.163  Sum_probs=244.7

Q ss_pred             CCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEE
Q 040195           36 RHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHL  115 (472)
Q Consensus        36 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L  115 (472)
                      ..+++++|+++++.+.+..  .+..+++|++|++++|.+.+. +  +..+++|++|++++|.+.+. +  +.++++|++|
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L  111 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL  111 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred             HcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence            3478889999998887652  688889999999999888754 3  78888999999999888753 3  7888899999


Q ss_pred             EcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195          116 RVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW  195 (472)
Q Consensus       116 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  195 (472)
                      ++++|.++. .+  +..+++|++|++++|.+++. +  +..+++|++|++++|...+..  .+..+++|++|++++|.+.
T Consensus       112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             ECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence            999998874 33  78888999999999888753 2  678888999999888544333  4677888999999988874


Q ss_pred             cccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCC
Q 040195          196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGI  275 (472)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  275 (472)
                      .+       +   +..+++|+.|++++|.+++.   .++.+++|+.|++++|++++. +  +..+++|+.|++++|++..
T Consensus       184 ~l-------~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          184 EL-------D---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CC-------C---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC
T ss_pred             ee-------c---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCC
Confidence            43       2   44678889999998888764   377888899999999888763 2  7788889999998888764


Q ss_pred             CCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCc
Q 040195          276 GTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQ  355 (472)
Q Consensus       276 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~  355 (472)
                      .....                      .++++.++++.+              +|+.+++++|.+.+.+|  ++.+++|+
T Consensus       248 ~~~~~----------------------l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~  289 (457)
T 3bz5_A          248 LDVST----------------------LSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIK  289 (457)
T ss_dssp             CCCTT----------------------CTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCC
T ss_pred             cCHHH----------------------CCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCC
Confidence            32111                      113444443322              33444444444333333  23445555


Q ss_pred             EEEccCCcCcccccc--------chhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccc
Q 040195          356 ILSLFGNFLHGSIPS--------SLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLS  427 (472)
Q Consensus       356 ~L~L~~n~l~~~~~~--------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~  427 (472)
                      .|++++|...+.++.        .+..+++|++|++++|++++ +  .+..+++|+.|++++|++.+ +       +.+.
T Consensus       290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l~~N~l~~-l-------~~L~  358 (457)
T 3bz5_A          290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-L--DVSHNTKLKSLSCVNAHIQD-F-------SSVG  358 (457)
T ss_dssp             CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-C--CCTTCTTCSEEECCSSCCCB-C-------TTGG
T ss_pred             EEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-c--ccccCCcCcEEECCCCCCCC-c-------cccc
Confidence            555555543322221        13445778888888888885 3  37778888888888888874 2       3344


Q ss_pred             eEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCccc
Q 040195          428 LYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS  470 (472)
Q Consensus       428 ~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~  470 (472)
                       .|++++|.+.+.     .++..|+.+++++|.+++.+|..+.
T Consensus       359 -~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          359 -KIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             -GSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             -cccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence             567777777654     3455778888888888888887653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=7.8e-33  Score=272.30  Aligned_cols=346  Identities=24%  Similarity=0.340  Sum_probs=291.3

Q ss_pred             CCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEE
Q 040195           60 NLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTL  139 (472)
Q Consensus        60 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  139 (472)
                      .+++++.|++.++.+.. .+ .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+... +. +.++++|++|
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEE
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccC-hh-hcCCCCCCEE
Confidence            46789999999998874 34 4888999999999999998543 3 89999999999999999844 33 8999999999


Q ss_pred             EccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEE
Q 040195          140 ALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC  219 (472)
Q Consensus       140 ~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~  219 (472)
                      ++++|.+.+. +. +..+++|++|++++|.+.+.  ..+..+++|++|++.+ .+..       .  ..+..+++|+.|+
T Consensus       118 ~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~-------~--~~~~~l~~L~~L~  183 (466)
T 1o6v_A          118 TLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTD-------L--KPLANLTTLERLD  183 (466)
T ss_dssp             ECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCC-------C--GGGTTCTTCCEEE
T ss_pred             ECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccC-------c--hhhccCCCCCEEE
Confidence            9999999854 33 88999999999999998742  3588999999999964 3221       1  1266889999999


Q ss_pred             cccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchh
Q 040195          220 IAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSI  299 (472)
Q Consensus       220 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  299 (472)
                      +++|.+...  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+...                    ..+
T Consensus       184 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--------------------~~l  239 (466)
T 1o6v_A          184 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--------------------GTL  239 (466)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------------------GGG
T ss_pred             CcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--------------------hhh
Confidence            999998754  348899999999999999876543  77899999999999988632                    011


Q ss_pred             hhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccC
Q 040195          300 ANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLA  379 (472)
Q Consensus       300 ~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~  379 (472)
                       ...++++.|++++|.+....+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+
T Consensus       240 -~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  312 (466)
T 1o6v_A          240 -ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT  312 (466)
T ss_dssp             -GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred             -hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence             122489999999999987654  8899999999999999986544  7889999999999999986543  78899999


Q ss_pred             eeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCC
Q 040195          380 NLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN  459 (472)
Q Consensus       380 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n  459 (472)
                      +|++++|++++..+  +..+++|+.|++++|.+.+ . ..+..+++++ .|++++|++++..|  +..+++|+.|++++|
T Consensus       313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~-~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-V-SSLANLTNIN-WLSAGHNQISDLTP--LANLTRITQLGLNDQ  385 (466)
T ss_dssp             EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-C-GGGTTCTTCC-EEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred             EEECcCCcCCCchh--hccCccCCEeECCCCccCC-c-hhhccCCCCC-EEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence            99999999996554  7899999999999999984 3 5788999999 99999999998776  899999999999999


Q ss_pred             eecc
Q 040195          460 QFSG  463 (472)
Q Consensus       460 ~~~~  463 (472)
                      ++++
T Consensus       386 ~~~~  389 (466)
T 1o6v_A          386 AWTN  389 (466)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            9986

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5.6e-33  Score=281.42  Aligned_cols=347  Identities=17%  Similarity=0.142  Sum_probs=212.2

Q ss_pred             CCCCCCCCCCccc----ccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCE
Q 040195           15 VTSSWNNTINLCQ----WMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEK   90 (472)
Q Consensus        15 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~   90 (472)
                      .++.|.....||.    |..+.+.      ..++.........  ..-..+.+++.++++++.+....+..+..+++|++
T Consensus         8 ~l~~~~~~~~C~~~~~~~~c~~~~------~~i~~~~~~~~~~--~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~   79 (597)
T 3oja_B            8 NVKPRQPEYKCIDSNLQYDCVFYD------VHIDMQTQDVYFG--FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL   79 (597)
T ss_dssp             ---CCCSEECCCCC--CCSEEECS------CEECSSCCCCEES--CSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSE
T ss_pred             cccCCCCCCcCcccCcCceeEecC------ceecccccccccC--cccccCCCceEEEeeCCCCCCcCHHHHccCCCCcE
Confidence            5688988888885    4433332      1122111111111  11124678899999999888776777889999999


Q ss_pred             EEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcc
Q 040195           91 LELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSL  170 (472)
Q Consensus        91 L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~  170 (472)
                      |++++|.+.+..+..|..+++|++|++++|.+++..+..|+.+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus        80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l  159 (597)
T 3oja_B           80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  159 (597)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence            99999999877777899999999999999999877777788999999999999998855555568889999999999988


Q ss_pred             ccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccc
Q 040195          171 GGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFE  250 (472)
Q Consensus       171 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~  250 (472)
                      ++..+..+..+++|++|++++|.+..++          +..+++|+.|++++|.+.+     +...++|+.|++++|.+.
T Consensus       160 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~  224 (597)
T 3oja_B          160 ERIEDDTFQATTSLQNLQLSSNRLTHVD----------LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN  224 (597)
T ss_dssp             CBCCTTTTTTCTTCCEEECTTSCCSBCC----------GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC
T ss_pred             CCCChhhhhcCCcCcEEECcCCCCCCcC----------hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccc
Confidence            8777777888888888888888763321          2234556666666555442     122334455555444443


Q ss_pred             ccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCc
Q 040195          251 GKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNL  330 (472)
Q Consensus       251 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L  330 (472)
                      .....   ..+                                           +++.|++++|.++..  ..+..+++|
T Consensus       225 ~~~~~---~~~-------------------------------------------~L~~L~L~~n~l~~~--~~l~~l~~L  256 (597)
T 3oja_B          225 VVRGP---VNV-------------------------------------------ELTILKLQHNNLTDT--AWLLNYPGL  256 (597)
T ss_dssp             EEECS---CCS-------------------------------------------CCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             ccccc---cCC-------------------------------------------CCCEEECCCCCCCCC--hhhccCCCC
Confidence            21111   012                                           233333333333321  234455566


Q ss_pred             ceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCC
Q 040195          331 IALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHI  410 (472)
Q Consensus       331 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~  410 (472)
                      +.|++++|.+.+..|..|..+++|++|++++|.+.+ ++..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus       257 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N  334 (597)
T 3oja_B          257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN  334 (597)
T ss_dssp             SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred             CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC
Confidence            666666666655555555566666666666665553 3333444555555555555555 34444455555555555555


Q ss_pred             cccccCChhhhhhcccceEEEcCCCccc
Q 040195          411 TLTGALPQQLLSITTLSLYLDLSHNLLN  438 (472)
Q Consensus       411 ~~~~~~~~~l~~~~~l~~~L~ls~n~l~  438 (472)
                      .+.+ ++  +..++.|+ .|++++|++.
T Consensus       335 ~l~~-~~--~~~~~~L~-~L~l~~N~~~  358 (597)
T 3oja_B          335 SIVT-LK--LSTHHTLK-NLTLSHNDWD  358 (597)
T ss_dssp             CCCC-CC--CCTTCCCS-EEECCSSCEE
T ss_pred             CCCC-cC--hhhcCCCC-EEEeeCCCCC
Confidence            5542 22  33344455 5555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.3e-33  Score=275.34  Aligned_cols=375  Identities=21%  Similarity=0.222  Sum_probs=193.2

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCC-------------CCEEEccCcccCCCCCc
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYR-------------LEKLELSNNSFSGTIPT  104 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-------------L~~L~L~~~~~~~~~~~  104 (472)
                      .++++++++++.+ +..+..++++++|++|++++|.+.+..|..+.++.+             +++|++++|.+.+ +|.
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence            5677777777777 455666777777777777777766666666665554             3677777766652 333


Q ss_pred             ccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCc
Q 040195          105 NLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL  184 (472)
Q Consensus       105 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  184 (472)
                      .   .++|++|++++|.+++ +|..   .++|++|++++|.+.+ ++..   .++|++|++++|.+++ .+ .++.+++|
T Consensus        89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L  155 (454)
T 1jl5_A           89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL  155 (454)
T ss_dssp             C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred             C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence            1   3566666666666663 3332   2556666666665552 2211   1456666666666553 33 35566666


Q ss_pred             cEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCC
Q 040195          185 VYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLA  264 (472)
Q Consensus       185 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  264 (472)
                      ++|++++|.+..++.           ..++|++|++++|.+++ ++ .++++++|+.|++++|.+++. +.   ..++|+
T Consensus       156 ~~L~l~~N~l~~lp~-----------~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~  218 (454)
T 1jl5_A          156 KIIDVDNNSLKKLPD-----------LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PD---LPLSLE  218 (454)
T ss_dssp             CEEECCSSCCSCCCC-----------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CC---CCTTCC
T ss_pred             CEEECCCCcCcccCC-----------CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CC---CcCccc
Confidence            666666665533221           11355555555555553 23 355555555555555555421 11   113455


Q ss_pred             eEEcCCCcCCCCCCCCcchhhhhcccCCCcCCc----hhhhccccccEEEeecccccCcccccccCccCcceEecccccc
Q 040195          265 VLNLERNNLGIGTANDLGFVTFLTNCSSLKLPH----SIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQL  340 (472)
Q Consensus       265 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i  340 (472)
                      +|++++|.+....  .+.   .+.+++.+.+..    .+....++++.|++++|.++.+..    ..++|++|++++|.+
T Consensus       219 ~L~l~~n~l~~lp--~~~---~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l  289 (454)
T 1jl5_A          219 SIVAGNNILEELP--ELQ---NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIF  289 (454)
T ss_dssp             EEECCSSCCSSCC--CCT---TCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred             EEECcCCcCCccc--ccC---CCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCc----ccCcCCEEECcCCcc
Confidence            5555555443111  010   111111111000    001122478888888888776432    237788888888888


Q ss_pred             ccCcchhhcCCCCCcEEEccCCcCccccccchhcc-cccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChh
Q 040195          341 HGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNL-TKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQ  419 (472)
Q Consensus       341 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~  419 (472)
                      .+. +.   ..++|++|++++|.+.+ ++    .+ ++|++|++++|++++ +|..   +++|++|++++|.++ .+|. 
T Consensus       290 ~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~-  354 (454)
T 1jl5_A          290 SGL-SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE-  354 (454)
T ss_dssp             SEE-SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC-
T ss_pred             Ccc-cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc-
Confidence            752 21   12688888888888874 22    23 589999999999884 5543   689999999999998 5776 


Q ss_pred             hhhhcccceEEEcCCCcccc--cccccccCC-------------CCCceEeccCCeecc--ccCCcccc
Q 040195          420 LLSITTLSLYLDLSHNLLNG--SLLLQVGNL-------------KNLILLDISGNQFSG--VIPVTLSI  471 (472)
Q Consensus       420 l~~~~~l~~~L~ls~n~l~~--~~~~~l~~~-------------~~L~~L~L~~n~~~~--~~p~~~~~  471 (472)
                        .+++++ .|++++|++++  .+|..+..+             ++|+.|++++|++++  .+|..+.+
T Consensus       355 --~l~~L~-~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~  420 (454)
T 1jl5_A          355 --LPQNLK-QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVED  420 (454)
T ss_dssp             --CCTTCC-EEECCSSCCSSCCCCCTTCCEEECCC----------------------------------
T ss_pred             --hhhhcc-EEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhh
Confidence              467888 99999999998  677777777             889999999999987  78877654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.8e-32  Score=255.55  Aligned_cols=308  Identities=23%  Similarity=0.314  Sum_probs=216.1

Q ss_pred             hhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCc
Q 040195           81 EIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL  160 (472)
Q Consensus        81 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L  160 (472)
                      .+..+++|++|+++++.+.. .+ .+..+++|++|++++|.++. .+. +..+++|++|++++|.+.+ . ..+..+++|
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L  112 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNL  112 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred             cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence            35567888888888887763 33 37778888888888888773 333 7778888888888887764 3 357777788


Q ss_pred             cEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCC
Q 040195          161 QVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLE  240 (472)
Q Consensus       161 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~  240 (472)
                      ++|++++|.+.+. +. +..+++|++|++++|....      .+  ..+..+++|++|++++|.+....+  +..+++|+
T Consensus       113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~------~~--~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~  180 (347)
T 4fmz_A          113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLS------DL--SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLY  180 (347)
T ss_dssp             SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCC------CC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred             CEEECcCCcccCc-hh-hccCCceeEEECCCCCCcc------cc--cchhhCCCCcEEEecCCCcCCchh--hccCCCCC
Confidence            8888887777632 22 6667777777777764211      11  114455566666666665543222  45555555


Q ss_pred             EEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcc
Q 040195          241 LLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGII  320 (472)
Q Consensus       241 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~  320 (472)
                      +|++++|.+.+...  +..+++|+.+++++                                           +.+....
T Consensus       181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~-------------------------------------------n~l~~~~  215 (347)
T 4fmz_A          181 SLSLNYNQIEDISP--LASLTSLHYFTAYV-------------------------------------------NQITDIT  215 (347)
T ss_dssp             EEECTTSCCCCCGG--GGGCTTCCEEECCS-------------------------------------------SCCCCCG
T ss_pred             EEEccCCccccccc--ccCCCccceeeccc-------------------------------------------CCCCCCc
Confidence            55555555543221  44455555555554                                           4444332


Q ss_pred             cccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCC
Q 040195          321 HFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQ  400 (472)
Q Consensus       321 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  400 (472)
                      +  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|++++ + ..+..++
T Consensus       216 ~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~  287 (347)
T 4fmz_A          216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLS  287 (347)
T ss_dssp             G--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCT
T ss_pred             h--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCC
Confidence            2  5677888888888888875544  77889999999999988753  467888999999999998884 3 4578899


Q ss_pred             CCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeec
Q 040195          401 NLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS  462 (472)
Q Consensus       401 ~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~  462 (472)
                      +|+.|++++|.+.+..+..+..+++++ .|++++|++++..|  +..+++|+.|++++|+++
T Consensus       288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          288 QLNSLFLNNNQLGNEDMEVIGGLTNLT-TLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TCSEEECCSSCCCGGGHHHHHTCTTCS-EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCCEEECcCCcCCCcChhHhhccccCC-EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999999999877778889999999 99999999997655  888999999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.6e-32  Score=262.54  Aligned_cols=310  Identities=19%  Similarity=0.180  Sum_probs=260.5

Q ss_pred             CCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195           37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR  116 (472)
Q Consensus        37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~  116 (472)
                      .++++.++++++.+.......+..+++|++|++++|.+....+.++..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            37889999999999888877889999999999999999877778999999999999999999977788899999999999


Q ss_pred             cccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcccc
Q 040195          117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY  196 (472)
Q Consensus       117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  196 (472)
                      +++|.++...+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.++..   .+..+++|+.+++++|.+..
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence            999999954445578999999999999999977788899999999999999998753   35678999999999998744


Q ss_pred             ccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCC
Q 040195          197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG  276 (472)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  276 (472)
                      +.            ..++|++|++++|.+.....   ...++|+.|++++|.+++.  ..+..+++|++|++++|.+.  
T Consensus       201 ~~------------~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~--  261 (390)
T 3o6n_A          201 LA------------IPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE--  261 (390)
T ss_dssp             EE------------CCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC--
T ss_pred             cC------------CCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC--
Confidence            32            44689999999999886533   2358999999999999753  56778888888888777653  


Q ss_pred             CCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcE
Q 040195          277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQI  356 (472)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  356 (472)
                                                               ...+..+..+++|++|++++|.+.+ .+..+..+++|++
T Consensus       262 -----------------------------------------~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~  299 (390)
T 3o6n_A          262 -----------------------------------------KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV  299 (390)
T ss_dssp             -----------------------------------------EEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCE
T ss_pred             -----------------------------------------CcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCE
Confidence                                                     2334456778889999999998874 4455577899999


Q ss_pred             EEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccc
Q 040195          357 LSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTG  414 (472)
Q Consensus       357 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~  414 (472)
                      |++++|++. .++..+..+++|++|++++|+++. ++  +..+++|+.|++++|++.+
T Consensus       300 L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred             EECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccc
Confidence            999999988 566677889999999999999884 33  6778999999999999974

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.3e-32  Score=256.26  Aligned_cols=305  Identities=25%  Similarity=0.309  Sum_probs=152.5

Q ss_pred             cCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcE
Q 040195           59 GNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQT  138 (472)
Q Consensus        59 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  138 (472)
                      ..+++|++|+++++.+... + .+..+++|++|++++|.+.+. +. +..+++|++|++++|.++. . ..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~  114 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE  114 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred             hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence            3455566666666555432 2 255566666666666655532 22 5566666666666665552 2 34556666666


Q ss_pred             EEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEE
Q 040195          139 LALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL  218 (472)
Q Consensus       139 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L  218 (472)
                      |++++|.+.+. +. +..+++|++|++++|..... ...+..+++|++|++++|.+.....         +..+++|++|
T Consensus       115 L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---------~~~l~~L~~L  182 (347)
T 4fmz_A          115 LYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP---------IANLTDLYSL  182 (347)
T ss_dssp             EECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG---------GGGCTTCSEE
T ss_pred             EECcCCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh---------hccCCCCCEE
Confidence            66666665532 22 55566666666666643322 2335566666666666665533221         3455666666


Q ss_pred             EcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCch
Q 040195          219 CIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHS  298 (472)
Q Consensus       219 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  298 (472)
                      ++++|.+.+..+  +..+++|+.+++++|.+.+...  +..+++|++|++++|.+....                   . 
T Consensus       183 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-------------------~-  238 (347)
T 4fmz_A          183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-------------------P-  238 (347)
T ss_dssp             ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-------------------G-
T ss_pred             EccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-------------------c-
Confidence            666666654322  5566777777777776654332  566666666666666554110                   0 


Q ss_pred             hhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhccccc
Q 040195          299 IANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKL  378 (472)
Q Consensus       299 ~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L  378 (472)
                       ....++++.|++++|.++..  ..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus       239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence             00011333333333333322  1233444444444444444432  223444444444444444444444444444444


Q ss_pred             CeeeccCCcccccCCcCccCCCCCceEeecCCcc
Q 040195          379 ANLELSSNSLQGNIPLSVGNCQNLIGFDASHITL  412 (472)
Q Consensus       379 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~  412 (472)
                      ++|++++|++++..+  +..+++|++|++++|++
T Consensus       314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             SEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             CEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            444444444442222  34444444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.4e-33  Score=259.04  Aligned_cols=254  Identities=31%  Similarity=0.507  Sum_probs=186.8

Q ss_pred             CCCCCCCCCCCCCCCccc--ccceeeCCCC--CceEEEECCCCccCc--ccCccccCCCCccEEeccC-CcCccCcchhh
Q 040195           10 HDPSGVTSSWNNTINLCQ--WMGVTCGHRH--QRVTELDLSNQRIGG--VLSPYVGNLSFLRYINLSD-NGFHGEIPQEI   82 (472)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~l~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~-~~~~~~~~~~~   82 (472)
                      .||. .++.|+.+.++|.  |.|+.|....  .+|++|+++++.+.+  ..+..+.++++|++|++++ +.+.+..|..+
T Consensus        19 ~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l   97 (313)
T 1ogq_A           19 GNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI   97 (313)
T ss_dssp             TCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG
T ss_pred             CCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH
Confidence            3454 6899998889999  9999997554  789999999999987  7778888999999999985 77777788888


Q ss_pred             hcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCC-Ccc
Q 040195           83 GNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS-ALQ  161 (472)
Q Consensus        83 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~-~L~  161 (472)
                      .++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++ +|+
T Consensus        98 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~  177 (313)
T 1ogq_A           98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT  177 (313)
T ss_dssp             GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred             hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence            8899999999988888777788888888888888888888777778888888888888888888777777787776 888


Q ss_pred             EEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCE
Q 040195          162 VIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLEL  241 (472)
Q Consensus       162 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~  241 (472)
                      +|++++|.+++..+..+..++ |++|++++|.+.       ......+..+++|+.|++++|.+++..+. +..+++|++
T Consensus       178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~  248 (313)
T 1ogq_A          178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE-------GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNG  248 (313)
T ss_dssp             EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE-------ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCE
T ss_pred             EEECcCCeeeccCChHHhCCc-ccEEECcCCccc-------CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCE
Confidence            888888888777777777665 777777777652       22233444556666666666655543333 445555555


Q ss_pred             EecCCCcccccccccccccCCCCeEEcCCCcC
Q 040195          242 LELAGNQFEGKVSIDFSSLKNLAVLNLERNNL  273 (472)
Q Consensus       242 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  273 (472)
                      |++++|.+++..+..+..+++|++|++++|++
T Consensus       249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             EECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence            55555555544444555555555555544443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.2e-31  Score=268.59  Aligned_cols=309  Identities=19%  Similarity=0.182  Sum_probs=249.4

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV  117 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l  117 (472)
                      .+++.++++++.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            67899999999998888888899999999999999999888889999999999999999999888888999999999999


Q ss_pred             ccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccc
Q 040195          118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV  197 (472)
Q Consensus       118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  197 (472)
                      ++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+..+
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc
Confidence            99999965555679999999999999999988888899999999999999998754   356789999999999987433


Q ss_pred             cccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCC
Q 040195          198 SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGT  277 (472)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  277 (472)
                                  ...++|+.|++++|.+....+.   ..++|+.|++++|.+++  +..+..+++|+.|++++|.+.   
T Consensus       208 ------------~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~---  267 (597)
T 3oja_B          208 ------------AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE---  267 (597)
T ss_dssp             ------------ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC---
T ss_pred             ------------cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC---
Confidence                        2456899999999998764433   24789999999999975  356788888888888887664   


Q ss_pred             CCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEE
Q 040195          278 ANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQIL  357 (472)
Q Consensus       278 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  357 (472)
                                                              ...+..|..+++|+.|+|++|.+.+ ++..+..+++|+.|
T Consensus       268 ----------------------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L  306 (597)
T 3oja_B          268 ----------------------------------------KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL  306 (597)
T ss_dssp             ----------------------------------------EEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEE
T ss_pred             ----------------------------------------CCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEE
Confidence                                                    2233455666777777777777764 34445567777777


Q ss_pred             EccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccc
Q 040195          358 SLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTG  414 (472)
Q Consensus       358 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~  414 (472)
                      ++++|.+. .+|..+..+++|+.|++++|+++. ++  +..+++|+.|++++|++.+
T Consensus       307 ~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          307 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred             ECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCC
Confidence            77777776 456666777777777777777763 22  5566777777777777763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=3.8e-35  Score=289.01  Aligned_cols=385  Identities=18%  Similarity=0.134  Sum_probs=232.5

Q ss_pred             CCceEEEECCCCccCcccCc-cccCCCCccEEeccCCcCccC----cchhhhcCCCCCEEEccCcccCCCCCccc-CCCC
Q 040195           37 HQRVTELDLSNQRIGGVLSP-YVGNLSFLRYINLSDNGFHGE----IPQEIGNLYRLEKLELSNNSFSGTIPTNL-SRCS  110 (472)
Q Consensus        37 ~~~l~~L~l~~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-~~l~  110 (472)
                      .+++++|+++++.+...... .+..+++|++|++++|.+...    ++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            36788899998888765433 367888999999998887642    35567778889999998888764333222 2333


Q ss_pred             ----CCcEEEcccCcCcc----cCCccccCCCCCcEEEccccCCCCCCCcccc-----CCCCccEEEecCCcccccc---
Q 040195          111 ----ELTHLRVANNKLEG----QIPKEIGSLLKLQTLALYYNNLTGQLPDFVG-----NLSALQVIYIRGNSLGGKI---  174 (472)
Q Consensus       111 ----~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~---  174 (472)
                          +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++..   
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                68888888888773    3466677888888888888877643333332     2457888888888776533   


Q ss_pred             -ccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccccccc----CCccCcCCCCCCEEecCCCcc
Q 040195          175 -PTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGS----IPDSLSNASNLELLELAGNQF  249 (472)
Q Consensus       175 -~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~~~~  249 (472)
                       +..+..+++|++|++++|.+.+.+.  ..+........++|++|++++|.++..    ++..+..+++|++|++++|.+
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGV--RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  239 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHH--HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHH--HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence             3445566788888888877643221  111111112345677777777766642    244455666777777777766


Q ss_pred             cccccccc-----cccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccc
Q 040195          250 EGKVSIDF-----SSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGI  324 (472)
Q Consensus       250 ~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l  324 (472)
                      ++.....+     ..+++|++|++++|.++..+..                                       ..+..+
T Consensus       240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~---------------------------------------~l~~~l  280 (461)
T 1z7x_W          240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG---------------------------------------DLCRVL  280 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH---------------------------------------HHHHHH
T ss_pred             ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH---------------------------------------HHHHHH
Confidence            54332221     2355666666666655421100                                       012234


Q ss_pred             cCccCcceEeccccccccCcchhhc-----CCCCCcEEEccCCcCccc----cccchhcccccCeeeccCCcccccCCcC
Q 040195          325 RNLVNLIALGMQSNQLHGTIPDVIG-----ELKNLQILSLFGNFLHGS----IPSSLGNLTKLANLELSSNSLQGNIPLS  395 (472)
Q Consensus       325 ~~~~~L~~L~l~~~~i~~~~~~~~~-----~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~  395 (472)
                      ..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..
T Consensus       281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  360 (461)
T 1z7x_W          281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE  360 (461)
T ss_dssp             HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred             hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence            4456666666666666544333222     125677777777766544    3444555677777777777666433322


Q ss_pred             ccC-----CCCCceEeecCCcccc----cCChhhhhhcccceEEEcCCCccccccccccc-----CCCCCceEeccCCee
Q 040195          396 VGN-----CQNLIGFDASHITLTG----ALPQQLLSITTLSLYLDLSHNLLNGSLLLQVG-----NLKNLILLDISGNQF  461 (472)
Q Consensus       396 ~~~-----~~~L~~L~ls~~~~~~----~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~-----~~~~L~~L~L~~n~~  461 (472)
                      +..     .++|++|++++|.+++    .++..+..+++++ .|++++|++++.....+.     ....|+.|++.++.+
T Consensus       361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~-~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~  439 (461)
T 1z7x_W          361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR-ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  439 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC-EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc-EEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence            221     5677777777777764    5566666677777 777777777654222221     123566666666655


Q ss_pred             cc
Q 040195          462 SG  463 (472)
Q Consensus       462 ~~  463 (472)
                      ..
T Consensus       440 ~~  441 (461)
T 1z7x_W          440 SE  441 (461)
T ss_dssp             CH
T ss_pred             CH
Confidence            43

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.98  E-value=3.4e-31  Score=258.30  Aligned_cols=341  Identities=24%  Similarity=0.296  Sum_probs=222.5

Q ss_pred             CCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCC-------------cEEEcccCcCcccC
Q 040195           60 NLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSEL-------------THLRVANNKLEGQI  126 (472)
Q Consensus        60 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L-------------~~L~l~~~~~~~~~  126 (472)
                      +.++|++|+++++.+ +.+|..++++++|++|++++|.+.+..|..++++++|             ++|++++|.+++ +
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            468999999999999 4889999999999999999999988899999888765             999999999884 4


Q ss_pred             CccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccCh
Q 040195          127 PKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF  206 (472)
Q Consensus       127 ~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~  206 (472)
                      |..   .++|++|++++|.+++ +|..   .++|++|++++|.+++ .+..   .++|++|++++|.+..       +| 
T Consensus        87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-------lp-  147 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-------LP-  147 (454)
T ss_dssp             CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-------CC-
T ss_pred             CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-------Cc-
Confidence            442   3799999999999985 5543   4899999999998874 2221   2699999999998743       44 


Q ss_pred             hhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhh
Q 040195          207 DILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTF  286 (472)
Q Consensus       207 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  286 (472)
                       .+..+++|++|++++|.+++ +|..   .++|++|++++|.+++ .+ .+..+++|++|++++|.+...+.        
T Consensus       148 -~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~--------  212 (454)
T 1jl5_A          148 -ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD--------  212 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC--------
T ss_pred             -ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC--------
Confidence             26689999999999999985 4443   3699999999999986 33 68999999999999998863211        


Q ss_pred             hcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCcc
Q 040195          287 LTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG  366 (472)
Q Consensus       287 ~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~  366 (472)
                                     ..++++.|++++|.+..+.  .+..+++|++|++++|.+.+ +|..   .++|++|++++|.+.+
T Consensus       213 ---------------~~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          213 ---------------LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             ---------------CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred             ---------------CcCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence                           0124555555555555322  24555555555555555542 2211   2444555555554442


Q ss_pred             ccccch-----------------hcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceE
Q 040195          367 SIPSSL-----------------GNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLY  429 (472)
Q Consensus       367 ~~~~~l-----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~  429 (472)
                       ++..+                 ...++|++|++++|++++ ++   ...++|+.|++++|.+.+ +|..   +++++ .
T Consensus       272 -l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~-i~---~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~-~  341 (454)
T 1jl5_A          272 -LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LC---DLPPSLEELNVSNNKLIE-LPAL---PPRLE-R  341 (454)
T ss_dssp             -CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-EC---CCCTTCCEEECCSSCCSC-CCCC---CTTCC-E
T ss_pred             -cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc-cc---CCcCcCCEEECCCCcccc-cccc---CCcCC-E
Confidence             22111                 011455555555555552 11   112589999999998884 6654   46788 9


Q ss_pred             EEcCCCcccccccccccCCCCCceEeccCCeecc--ccCCcccc
Q 040195          430 LDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG--VIPVTLSI  471 (472)
Q Consensus       430 L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~--~~p~~~~~  471 (472)
                      |++++|+++. +|.   .+++|+.|++++|++++  .+|..+++
T Consensus       342 L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~  381 (454)
T 1jl5_A          342 LIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED  381 (454)
T ss_dssp             EECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred             EECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence            9999999984 454   47899999999999998  78887754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.98  E-value=1.9e-30  Score=253.35  Aligned_cols=328  Identities=20%  Similarity=0.161  Sum_probs=232.6

Q ss_pred             cCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCC
Q 040195           54 LSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSL  133 (472)
Q Consensus        54 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l  133 (472)
                      .+..+..+++|++|+++++.+.+. | .+..+++|++|++++|.+.+. +  +..+++|++|++++|.+++. +  +.++
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l  105 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPL  105 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred             cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence            334567788899999998888754 4 688888999999998888753 3  77888899999998888753 2  7788


Q ss_pred             CCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCC
Q 040195          134 LKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLP  213 (472)
Q Consensus       134 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~  213 (472)
                      ++|++|++++|.+++ .+  +..+++|++|++++|.+++.   .++.+++|++|++++|...      +.+   .+..++
T Consensus       106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~------~~~---~~~~l~  170 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKI------TKL---DVTPQT  170 (457)
T ss_dssp             TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCC------CCC---CCTTCT
T ss_pred             CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcc------ccc---ccccCC
Confidence            889999998888875 33  77888888888888888753   3677888888888888421      222   144677


Q ss_pred             CccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCC
Q 040195          214 NLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL  293 (472)
Q Consensus       214 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l  293 (472)
                      +|+.|++++|.+++. +  +..+++|+.|++++|.+++.   .+..+++|++|++++|+++..                 
T Consensus       171 ~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-----------------  227 (457)
T 3bz5_A          171 QLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-----------------  227 (457)
T ss_dssp             TCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-----------------
T ss_pred             cCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-----------------
Confidence            888888888887753 3  67778888888888887753   366777888888888776531                 


Q ss_pred             cCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchh
Q 040195          294 KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLG  373 (472)
Q Consensus       294 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  373 (472)
                        |  +. ..++++.|++++|.++...   +..+++|+.|+++++              +|+.|++++|.+.+.+|  +.
T Consensus       228 --p--~~-~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~  283 (457)
T 3bz5_A          228 --D--VT-PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AE  283 (457)
T ss_dssp             --C--CT-TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CT
T ss_pred             --C--cc-ccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--cc
Confidence              1  00 1125666677666666542   345566666665543              45667777777665555  46


Q ss_pred             cccccCeeeccCCcccccCCc--------CccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccc
Q 040195          374 NLTKLANLELSSNSLQGNIPL--------SVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV  445 (472)
Q Consensus       374 ~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l  445 (472)
                      .+++|+.|++++|+..+.++.        .+..+++|+.|++++|.+++ ++  +..++.|+ .|++++|++++      
T Consensus       284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~-~L~l~~N~l~~------  353 (457)
T 3bz5_A          284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLK-SLSCVNAHIQD------  353 (457)
T ss_dssp             TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCS-EEECCSSCCCB------
T ss_pred             ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCc-EEECCCCCCCC------
Confidence            789999999999986655442        24556777888888887774 32  67777777 78888887764      


Q ss_pred             cCCCCCceEeccCCeecc
Q 040195          446 GNLKNLILLDISGNQFSG  463 (472)
Q Consensus       446 ~~~~~L~~L~L~~n~~~~  463 (472)
                        +++|..|++++|.+++
T Consensus       354 --l~~L~~L~l~~n~l~g  369 (457)
T 3bz5_A          354 --FSSVGKIPALNNNFEA  369 (457)
T ss_dssp             --CTTGGGSSGGGTSEEE
T ss_pred             --ccccccccccCCcEEe
Confidence              2456666777777654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=4e-34  Score=281.72  Aligned_cols=356  Identities=20%  Similarity=0.149  Sum_probs=233.9

Q ss_pred             CCccEEeccCCcCccCcch-hhhcCCCCCEEEccCcccCCC----CCcccCCCCCCcEEEcccCcCcccCCccc-cCCC-
Q 040195           62 SFLRYINLSDNGFHGEIPQ-EIGNLYRLEKLELSNNSFSGT----IPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLL-  134 (472)
Q Consensus        62 ~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~-  134 (472)
                      ++|++|+++++.+...... .+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+....+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            5678899988887654333 377888899999988887632    34556777888888888888764333322 2233 


Q ss_pred             ---CCcEEEccccCCCC----CCCccccCCCCccEEEecCCccccccccccc-----cCCCccEEEccCCcccccccccc
Q 040195          135 ---KLQTLALYYNNLTG----QLPDFVGNLSALQVIYIRGNSLGGKIPTTLG-----LLRNLVYLNVNENQFWYVSSFSG  202 (472)
Q Consensus       135 ---~L~~L~l~~~~i~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~l~~~~~~~~  202 (472)
                         +|++|++++|.+++    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+.....   
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~---  159 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC---  159 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH---
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH---
Confidence               57788887777763    2356666777777777777776543333322     23456666666666533211   


Q ss_pred             ccChhhhcCCCCccEEEcccccccccCCccCc-----CCCCCCEEecCCCcccccc----cccccccCCCCeEEcCCCcC
Q 040195          203 SLPFDILVNLPNLKKLCIAENNFVGSIPDSLS-----NASNLELLELAGNQFEGKV----SIDFSSLKNLAVLNLERNNL  273 (472)
Q Consensus       203 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~  273 (472)
                      ......+..+++|++|++++|.+....+..+.     ..++|++|++++|.+++..    +..+..+++|++|++++   
T Consensus       160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~---  236 (461)
T 1z7x_W          160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS---  236 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS---
T ss_pred             HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC---
Confidence            00012233445555555555554432221111     2345555555555544321    22333444555555544   


Q ss_pred             CCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcc-----cccccCccCcceEeccccccccC----c
Q 040195          274 GIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGII-----HFGIRNLVNLIALGMQSNQLHGT----I  344 (472)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~i~~~----~  344 (472)
                                                              |.++...     ...+..+++|++|++++|.+.+.    +
T Consensus       237 ----------------------------------------n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  276 (461)
T 1z7x_W          237 ----------------------------------------NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL  276 (461)
T ss_dssp             ----------------------------------------SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             ----------------------------------------CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence                                                    4443321     22233578999999999988864    4


Q ss_pred             chhhcCCCCCcEEEccCCcCccccccchhc-----ccccCeeeccCCccccc----CCcCccCCCCCceEeecCCccccc
Q 040195          345 PDVIGELKNLQILSLFGNFLHGSIPSSLGN-----LTKLANLELSSNSLQGN----IPLSVGNCQNLIGFDASHITLTGA  415 (472)
Q Consensus       345 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-----~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~~~~~  415 (472)
                      +..+..+++|++|++++|.+.+..+..+..     .++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.
T Consensus       277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence            666777999999999999997655544443     26999999999999854    455677889999999999999865


Q ss_pred             CChhhhh-----hcccceEEEcCCCcccc----cccccccCCCCCceEeccCCeeccc
Q 040195          416 LPQQLLS-----ITTLSLYLDLSHNLLNG----SLLLQVGNLKNLILLDISGNQFSGV  464 (472)
Q Consensus       416 ~~~~l~~-----~~~l~~~L~ls~n~l~~----~~~~~l~~~~~L~~L~L~~n~~~~~  464 (472)
                      .+..+..     .++++ .|++++|++++    .++..+..+++|++|++++|++++.
T Consensus       357 ~~~~l~~~l~~~~~~L~-~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          357 GVRELCQGLGQPGSVLR-VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHHHHTSTTCCCC-EEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             cHHHHHHHHcCCCCceE-EEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            5555544     56888 99999999996    6788888999999999999999865

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.3e-29  Score=237.92  Aligned_cols=268  Identities=18%  Similarity=0.212  Sum_probs=148.7

Q ss_pred             CCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCC
Q 040195          135 KLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPN  214 (472)
Q Consensus       135 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~  214 (472)
                      ++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..+       +...   .++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-------~~~~---~~~  122 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-------PEKM---PKT  122 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-------CSSC---CTT
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-------Chhh---ccc
Confidence            444444444444433333444445555555555544443344445555555555555544222       1111   145


Q ss_pred             ccEEEcccccccccCCccCcCCCCCCEEecCCCcccc--cccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCC
Q 040195          215 LKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEG--KVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSS  292 (472)
Q Consensus       215 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  292 (472)
                      |++|++++|.+.+..+..+.++++|+.|++++|.+..  ..+..+..+++|++|++++|.+..                 
T Consensus       123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------  185 (330)
T 1xku_A          123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-----------------  185 (330)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-----------------
T ss_pred             ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-----------------
Confidence            5666666666555444556666777777777766643  334456667777777777766541                 


Q ss_pred             CcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccch
Q 040195          293 LKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSL  372 (472)
Q Consensus       293 l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  372 (472)
                        ++.                         .+  .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus       186 --l~~-------------------------~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  236 (330)
T 1xku_A          186 --IPQ-------------------------GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL  236 (330)
T ss_dssp             --CCS-------------------------SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             --CCc-------------------------cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc
Confidence              110                         00  1455555555555555555556666666666666666655555556


Q ss_pred             hcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhh------hhcccceEEEcCCCcccc--ccccc
Q 040195          373 GNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLL------SITTLSLYLDLSHNLLNG--SLLLQ  444 (472)
Q Consensus       373 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~------~~~~l~~~L~ls~n~l~~--~~~~~  444 (472)
                      ..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+.      ....+. .+++++|++..  ..|..
T Consensus       237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~-~l~l~~N~~~~~~i~~~~  314 (330)
T 1xku_A          237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS-GVSLFSNPVQYWEIQPST  314 (330)
T ss_dssp             GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS-EEECCSSSSCGGGSCGGG
T ss_pred             cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc-ceEeecCcccccccCccc
Confidence            66666666666666666 5555666666666666666666632222232      124556 78888887753  45677


Q ss_pred             ccCCCCCceEeccCCe
Q 040195          445 VGNLKNLILLDISGNQ  460 (472)
Q Consensus       445 l~~~~~L~~L~L~~n~  460 (472)
                      |..+++++.++|++|+
T Consensus       315 f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          315 FRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             GTTCCCGGGEEC----
T ss_pred             cccccceeEEEecccC
Confidence            8888888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.2e-29  Score=238.34  Aligned_cols=288  Identities=19%  Similarity=0.216  Sum_probs=170.5

Q ss_pred             CCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEcc
Q 040195          111 ELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVN  190 (472)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  190 (472)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            3455555555554 3333332  455556666555554444455556666666666666655445556666666666666


Q ss_pred             CCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccc--cccccccccCCCCeEEc
Q 040195          191 ENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEG--KVSIDFSSLKNLAVLNL  268 (472)
Q Consensus       191 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l  268 (472)
                      +|.+..+       +...+   ++|++|++++|.+....+..+..+++|+.|++++|.++.  ..+..+..+ +|++|++
T Consensus       111 ~n~l~~l-------~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l  179 (332)
T 2ft3_A          111 KNHLVEI-------PPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI  179 (332)
T ss_dssp             SSCCCSC-------CSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred             CCcCCcc-------Ccccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence            6655322       21111   566666666666665555556677777777777776643  334445555 6777777


Q ss_pred             CCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhh
Q 040195          269 ERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI  348 (472)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  348 (472)
                      ++|.++.                   +|.                         .+  .++|++|++++|.+.+..+..+
T Consensus       180 ~~n~l~~-------------------l~~-------------------------~~--~~~L~~L~l~~n~i~~~~~~~l  213 (332)
T 2ft3_A          180 SEAKLTG-------------------IPK-------------------------DL--PETLNELHLDHNKIQAIELEDL  213 (332)
T ss_dssp             CSSBCSS-------------------CCS-------------------------SS--CSSCSCCBCCSSCCCCCCTTSS
T ss_pred             cCCCCCc-------------------cCc-------------------------cc--cCCCCEEECCCCcCCccCHHHh
Confidence            7666541                   110                         01  1456666666666665555556


Q ss_pred             cCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhh------
Q 040195          349 GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLS------  422 (472)
Q Consensus       349 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~------  422 (472)
                      ..+++|++|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+..      
T Consensus       214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  292 (332)
T 2ft3_A          214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK  292 (332)
T ss_dssp             TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred             cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence            66666666666666666555556666666777777777666 56666666777777777777666333333332      


Q ss_pred             hcccceEEEcCCCccc--ccccccccCCCCCceEeccCCe
Q 040195          423 ITTLSLYLDLSHNLLN--GSLLLQVGNLKNLILLDISGNQ  460 (472)
Q Consensus       423 ~~~l~~~L~ls~n~l~--~~~~~~l~~~~~L~~L~L~~n~  460 (472)
                      ...++ .|++++|++.  +..+..|..+++|+.+++++|+
T Consensus       293 ~~~l~-~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          293 RAYYN-GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCBS-EEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccc-ceEeecCcccccccCcccccccchhhhhhccccc
Confidence            24466 8888888876  5667788888899999998875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=6.5e-29  Score=233.21  Aligned_cols=289  Identities=19%  Similarity=0.225  Sum_probs=210.9

Q ss_pred             ceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcc
Q 040195           39 RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVA  118 (472)
Q Consensus        39 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~  118 (472)
                      +++.++++++.+...... +  .+++++|++++|.+....+..+.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~lp~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKD-L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCCCS-C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccCcc-C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            567788888877654332 2  3688899999998887777788899999999999998887778888899999999999


Q ss_pred             cCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccc--ccccccccCCCccEEEccCCcccc
Q 040195          119 NNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGG--KIPTTLGLLRNLVYLNVNENQFWY  196 (472)
Q Consensus       119 ~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~  196 (472)
                      +|.++ ..+..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+++|++|++++|.+..
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            99887 4555443  789999999988886666678888899999998888753  455677888888888888888744


Q ss_pred             ccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCC
Q 040195          197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG  276 (472)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  276 (472)
                      +.       ...   .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.. 
T Consensus       186 l~-------~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-  254 (330)
T 1xku_A          186 IP-------QGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-  254 (330)
T ss_dssp             CC-------SSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-
T ss_pred             CC-------ccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-
Confidence            32       221   2678888888888877767778888888888888888876666677777778888777776641 


Q ss_pred             CCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcC------
Q 040195          277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGE------  350 (472)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~------  350 (472)
                                                                 .+..+..+++|++|++++|.+.+..+..|..      
T Consensus       255 -------------------------------------------lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~  291 (330)
T 1xku_A          255 -------------------------------------------VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK  291 (330)
T ss_dssp             -------------------------------------------CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT
T ss_pred             -------------------------------------------CChhhccCCCcCEEECCCCcCCccChhhcCCcccccc
Confidence                                                       1223455566666666666666554444432      


Q ss_pred             CCCCcEEEccCCcCcc--ccccchhcccccCeeeccCCc
Q 040195          351 LKNLQILSLFGNFLHG--SIPSSLGNLTKLANLELSSNS  387 (472)
Q Consensus       351 ~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~l~~~~  387 (472)
                      .+.++.|++++|++..  ..+..+..++.++.+++++|+
T Consensus       292 ~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            3677788888887753  345567777888888887764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.7e-29  Score=233.75  Aligned_cols=288  Identities=21%  Similarity=0.234  Sum_probs=191.6

Q ss_pred             ceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcc
Q 040195           39 RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVA  118 (472)
Q Consensus        39 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~  118 (472)
                      +++.++++++.+...... +  .+++++|++++|.+....+..+.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKE-I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCSC-C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCCC-C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            456777777777544332 2  3577888888887776666677788888888888887776667777778888888888


Q ss_pred             cCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccc--ccccccccCCCccEEEccCCcccc
Q 040195          119 NNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGG--KIPTTLGLLRNLVYLNVNENQFWY  196 (472)
Q Consensus       119 ~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~  196 (472)
                      +|.++ ..+..+.  ++|++|++++|.+....+..+..+++|++|++++|.++.  ..+..+..+ +|++|++++|.+..
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            87777 4444443  677888888777775555567777777777777777642  344555555 77777777777643


Q ss_pred             ccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCC
Q 040195          197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG  276 (472)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  276 (472)
                      ++       ...   .++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.  
T Consensus       187 l~-------~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--  254 (332)
T 2ft3_A          187 IP-------KDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--  254 (332)
T ss_dssp             CC-------SSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--
T ss_pred             cC-------ccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--
Confidence            32       211   156677777777766655566666777777777777666555555666666666666666553  


Q ss_pred             CCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcC------
Q 040195          277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGE------  350 (472)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~------  350 (472)
                                                               . .+..+..+++|+.|++++|.+++..+..|..      
T Consensus       255 -----------------------------------------~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  292 (332)
T 2ft3_A          255 -----------------------------------------R-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK  292 (332)
T ss_dssp             -----------------------------------------B-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred             -----------------------------------------e-cChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence                                                     1 2233556677777777777777655555543      


Q ss_pred             CCCCcEEEccCCcCc--cccccchhcccccCeeeccCCc
Q 040195          351 LKNLQILSLFGNFLH--GSIPSSLGNLTKLANLELSSNS  387 (472)
Q Consensus       351 ~~~L~~L~L~~n~l~--~~~~~~l~~~~~L~~L~l~~~~  387 (472)
                      .+.|+.|++++|++.  +..+..+..+++|+.+++++|+
T Consensus       293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            366888888888876  4566677788888888888774

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=7.5e-29  Score=230.46  Aligned_cols=205  Identities=29%  Similarity=0.433  Sum_probs=144.7

Q ss_pred             cCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcc
Q 040195          210 VNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTN  289 (472)
Q Consensus       210 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  289 (472)
                      ..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.               
T Consensus        98 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---------------  162 (313)
T 1ogq_A           98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS---------------  162 (313)
T ss_dssp             GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE---------------
T ss_pred             hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc---------------
Confidence            34455555555555555555556666666777777766666555556666666666666665542               


Q ss_pred             cCCCcCCchhhhccccccEEEeecccccCcccccccCcc-CcceEeccccccccCcchhhcCCCCCcEEEccCCcCcccc
Q 040195          290 CSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLV-NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSI  368 (472)
Q Consensus       290 ~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~  368 (472)
                                                  ...+..+..++ +|++|++++|.+.+..|..+..++ |++|++++|.+.+..
T Consensus       163 ----------------------------~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~  213 (313)
T 1ogq_A          163 ----------------------------GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA  213 (313)
T ss_dssp             ----------------------------EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC
T ss_pred             ----------------------------CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC
Confidence                                        12233344554 677777777777766666676666 888888888777777


Q ss_pred             ccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCC
Q 040195          369 PSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNL  448 (472)
Q Consensus       369 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~  448 (472)
                      +..+..+++|++|++++|.+++.++. +..+++|++|++++|.+++.+|..+..+++++ .|++++|++++.+|.. ..+
T Consensus       214 ~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~ip~~-~~l  290 (313)
T 1ogq_A          214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH-SLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCC-EEECCSSEEEEECCCS-TTG
T ss_pred             CHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCC-EEECcCCcccccCCCC-ccc
Confidence            77777788888888888887755544 66778888888888888877888888888888 8888888888777765 778


Q ss_pred             CCCceEeccCCee
Q 040195          449 KNLILLDISGNQF  461 (472)
Q Consensus       449 ~~L~~L~L~~n~~  461 (472)
                      ++|+.+++++|+.
T Consensus       291 ~~L~~l~l~~N~~  303 (313)
T 1ogq_A          291 QRFDVSAYANNKC  303 (313)
T ss_dssp             GGSCGGGTCSSSE
T ss_pred             cccChHHhcCCCC
Confidence            8888889998884

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=6.3e-28  Score=225.52  Aligned_cols=252  Identities=20%  Similarity=0.319  Sum_probs=219.2

Q ss_pred             CCCCCCCCC----CCCCCcccccceeeC--------CCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCc
Q 040195           11 DPSGVTSSW----NNTINLCQWMGVTCG--------HRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEI   78 (472)
Q Consensus        11 ~~~~~~~~~----~~~~~~~~~~~~~~~--------~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~   78 (472)
                      |+.+..+.|    .....+|.|.|+.|.        ....+++.|+++++.+. ..+..+.++++|++|++++|.+. .+
T Consensus        42 ~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~l  119 (328)
T 4fcg_A           42 DRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL  119 (328)
T ss_dssp             CCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CC
T ss_pred             CchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-ch
Confidence            444556778    567789999999983        34588999999999997 45566888999999999999998 78


Q ss_pred             chhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccC---------CCCCcEEEccccCCCCC
Q 040195           79 PQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGS---------LLKLQTLALYYNNLTGQ  149 (472)
Q Consensus        79 ~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~---------l~~L~~L~l~~~~i~~~  149 (472)
                      |..+.++++|++|++++|.+. .+|..+..+++|++|++++|...+..|..+..         +++|++|++++|.++ .
T Consensus       120 p~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~  197 (328)
T 4fcg_A          120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-S  197 (328)
T ss_dssp             CSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-C
T ss_pred             hHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-c
Confidence            888999999999999999998 77888999999999999998877677776654         999999999999998 7


Q ss_pred             CCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccC
Q 040195          150 LPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI  229 (472)
Q Consensus       150 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  229 (472)
                      +|..+..+++|++|++++|.++ ..+..+..+++|++|++++|.+.      +.++ ..+..+++|+.|++++|.+.+.+
T Consensus       198 lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~------~~~p-~~~~~l~~L~~L~L~~n~~~~~~  269 (328)
T 4fcg_A          198 LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTAL------RNYP-PIFGGRAPLKRLILKDCSNLLTL  269 (328)
T ss_dssp             CCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTC------CBCC-CCTTCCCCCCEEECTTCTTCCBC
T ss_pred             chHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcch------hhhH-HHhcCCCCCCEEECCCCCchhhc
Confidence            8888999999999999999998 46667899999999999998753      2233 34668899999999999998889


Q ss_pred             CccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195          230 PDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       230 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  274 (472)
                      |..+..+++|+.|++++|.+.+..+..+..+++++.+.+..+.+.
T Consensus       270 p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            989999999999999999998899999999999999999877654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=3e-30  Score=262.14  Aligned_cols=379  Identities=16%  Similarity=0.093  Sum_probs=199.4

Q ss_pred             CCCCccEEeccCCcCccCcchhhhc-CCC-CCEEEccCcc-cCC-CCCcccCCCCCCcEEEcccCcCcccC----Ccccc
Q 040195           60 NLSFLRYINLSDNGFHGEIPQEIGN-LYR-LEKLELSNNS-FSG-TIPTNLSRCSELTHLRVANNKLEGQI----PKEIG  131 (472)
Q Consensus        60 ~~~~L~~L~L~~~~~~~~~~~~~~~-l~~-L~~L~L~~~~-~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~  131 (472)
                      .+++|++|+|+++.+.+..+..+.. ++. |++|++++|. +.. ..+.....+++|++|++++|.+++..    +....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4555666666655544333333333 233 6666665553 110 01111234555666666655544221    11233


Q ss_pred             CCCCCcEEEccccCCCC----CCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChh
Q 040195          132 SLLKLQTLALYYNNLTG----QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD  207 (472)
Q Consensus       132 ~l~~L~~L~l~~~~i~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  207 (472)
                      .+++|++|+++++.+.+    .++..+..+++|++|++++|.+.+ .+..+..+++|++|+++.......    ......
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~  264 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIG----MPEKYM  264 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTT----CTTSSS
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccc----hHHHHH
Confidence            45556666665555541    122223345556666666555542 344455555566555553211000    000011


Q ss_pred             hhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccc-ccccccCCCCeEEcCCCcCCCCCCCCcchhhh
Q 040195          208 ILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVS-IDFSSLKNLAVLNLERNNLGIGTANDLGFVTF  286 (472)
Q Consensus       208 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  286 (472)
                      .+..+++|+.+.+.++.. ..++..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+...          
T Consensus       265 ~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~----------  332 (592)
T 3ogk_B          265 NLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR----------  332 (592)
T ss_dssp             CCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH----------
T ss_pred             HhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH----------
Confidence            223445555555554322 1233444455555666665555433222 123455555555555 222110          


Q ss_pred             hcccCCCcCCchhhhccccccEEEeec-----------ccccCccc-ccccCccCcceEeccccccccCcchhhcC-CCC
Q 040195          287 LTNCSSLKLPHSIANLSSTMTHFYIGG-----------NQILGIIH-FGIRNLVNLIALGMQSNQLHGTIPDVIGE-LKN  353 (472)
Q Consensus       287 ~~~~~~l~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~-~~~  353 (472)
                              ....+....++|++|++++           +.++.... .....+++|++|+++.+.+++..+..+.. +++
T Consensus       333 --------~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~  404 (592)
T 3ogk_B          333 --------GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN  404 (592)
T ss_dssp             --------HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCS
T ss_pred             --------HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCC
Confidence                    0011122334788888883           34443222 22345788888888777777666555554 788


Q ss_pred             CcEEEcc----CCcCccc-----cccchhcccccCeeeccCCc--ccccCCcCc-cCCCCCceEeecCCcccc-cCChhh
Q 040195          354 LQILSLF----GNFLHGS-----IPSSLGNLTKLANLELSSNS--LQGNIPLSV-GNCQNLIGFDASHITLTG-ALPQQL  420 (472)
Q Consensus       354 L~~L~L~----~n~l~~~-----~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~ls~~~~~~-~~~~~l  420 (472)
                      |++|+++    .+.+++.     ++..+..+++|++|+++.|.  +++.....+ ..+++|++|++++|.+++ .++..+
T Consensus       405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  484 (592)
T 3ogk_B          405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS  484 (592)
T ss_dssp             CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH
T ss_pred             CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH
Confidence            8888886    4556542     33345667888888887554  443333223 347888888888888764 234445


Q ss_pred             hhhcccceEEEcCCCccccc-ccccccCCCCCceEeccCCeeccc
Q 040195          421 LSITTLSLYLDLSHNLLNGS-LLLQVGNLKNLILLDISGNQFSGV  464 (472)
Q Consensus       421 ~~~~~l~~~L~ls~n~l~~~-~~~~l~~~~~L~~L~L~~n~~~~~  464 (472)
                      ..+++|+ .|++++|.+++. .+.....+++|+.|+|++|++++.
T Consensus       485 ~~~~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          485 RGCPNLQ-KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             TCCTTCC-EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             hcCcccC-eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            6677788 888888887654 333445678888888888887765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.7e-29  Score=256.71  Aligned_cols=395  Identities=12%  Similarity=0.057  Sum_probs=283.2

Q ss_pred             CCCceEEEECCCCccCcccCccccC-CCC-ccEEeccCCcC-cc-CcchhhhcCCCCCEEEccCcccCCCCC----cccC
Q 040195           36 RHQRVTELDLSNQRIGGVLSPYVGN-LSF-LRYINLSDNGF-HG-EIPQEIGNLYRLEKLELSNNSFSGTIP----TNLS  107 (472)
Q Consensus        36 ~~~~l~~L~l~~~~~~~~~~~~l~~-~~~-L~~L~L~~~~~-~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~----~~l~  107 (472)
                      .++++++|+++++.+.+.....+.. +++ |++|++++|.. .. ..+.....+++|++|++++|.+.+...    ..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4588999999999887765555555 444 99999999862 21 122334589999999999998865532    2346


Q ss_pred             CCCCCcEEEcccCcCcc----cCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccc---ccccccccc
Q 040195          108 RCSELTHLRVANNKLEG----QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLG---GKIPTTLGL  180 (472)
Q Consensus       108 ~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~l~~  180 (472)
                      .+++|++|+++++.++.    .++..+.++++|++|++++|.+. ..+..+..+++|++|.++.....   ......+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            78999999999998862    33444667899999999999887 46788889999999999864322   233456678


Q ss_pred             CCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCC-ccCcCCCCCCEEecCCCcccccccc-ccc
Q 040195          181 LRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIP-DSLSNASNLELLELAGNQFEGKVSI-DFS  258 (472)
Q Consensus       181 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~l~  258 (472)
                      +++|+.++++++...       .+ ...+..+++|++|++++|.++.... ..+..+++|++|+++ +.+.+.... ...
T Consensus       269 ~~~L~~L~l~~~~~~-------~l-~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~  339 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPN-------EM-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQ  339 (592)
T ss_dssp             CTTCCEEEETTCCTT-------TG-GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHH
T ss_pred             cccccccCccccchh-------HH-HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHH
Confidence            899999999876421       22 2345578899999999998764322 346789999999999 444433333 346


Q ss_pred             ccCCCCeEEcCC-----------CcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccC-
Q 040195          259 SLKNLAVLNLER-----------NNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRN-  326 (472)
Q Consensus       259 ~l~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~-  326 (472)
                      .+++|++|++++           +.++..+                 + ..+....++|+.|++..+.++......+.. 
T Consensus       340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~-----------------~-~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~  401 (592)
T 3ogk_B          340 YCKQLKRLRIERGADEQGMEDEEGLVSQRG-----------------L-IALAQGCQELEYMAVYVSDITNESLESIGTY  401 (592)
T ss_dssp             HCTTCCEEEEECCCCSSTTSSTTCCCCHHH-----------------H-HHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred             hCCCCCEEEeecCccccccccccCccCHHH-----------------H-HHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence            789999999994           2332110                 0 111223458999999888887765555655 


Q ss_pred             ccCcceEecc----ccccccC-----cchhhcCCCCCcEEEccCCc--Cccccccchh-cccccCeeeccCCccccc-CC
Q 040195          327 LVNLIALGMQ----SNQLHGT-----IPDVIGELKNLQILSLFGNF--LHGSIPSSLG-NLTKLANLELSSNSLQGN-IP  393 (472)
Q Consensus       327 ~~~L~~L~l~----~~~i~~~-----~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~-~~~~L~~L~l~~~~~~~~-~~  393 (472)
                      +++|+.|+++    .+.+++.     .+..+..+++|++|+++.|.  +++.....+. .+++|++|++++|++++. ++
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  481 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM  481 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence            8999999997    4566643     33346678999999998654  5555444444 489999999999998853 34


Q ss_pred             cCccCCCCCceEeecCCccccc-CChhhhhhcccceEEEcCCCccccccccccc-CCCCCceEeccCC
Q 040195          394 LSVGNCQNLIGFDASHITLTGA-LPQQLLSITTLSLYLDLSHNLLNGSLLLQVG-NLKNLILLDISGN  459 (472)
Q Consensus       394 ~~~~~~~~L~~L~ls~~~~~~~-~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~-~~~~L~~L~L~~n  459 (472)
                      ..+..+++|++|++++|.+++. ++.....+++|+ .|++++|++++.....+. .++.+....+..+
T Consensus       482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR-YLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC-EEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC-eeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            4557889999999999998754 334456789999 999999999876554443 5566666655544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=7.3e-27  Score=221.28  Aligned_cols=281  Identities=18%  Similarity=0.147  Sum_probs=173.8

Q ss_pred             CCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCC
Q 040195          133 LLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNL  212 (472)
Q Consensus       133 l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~  212 (472)
                      ++.....+++++.++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+..       ++...+..+
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~l   99 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-------IEEDSFSSL   99 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-------ECTTTTTTC
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-------cCHhhcCCC
Confidence            444555666666666 4454333  467777777777665444456666666666666665522       222334455


Q ss_pred             CCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccc-ccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccC
Q 040195          213 PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVS-IDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS  291 (472)
Q Consensus       213 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  291 (472)
                      ++|++|++++|.+++..+..++++++|++|++++|.++.... ..+..+++|++|++++|.                   
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-------------------  160 (353)
T 2z80_A          100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-------------------  160 (353)
T ss_dssp             TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-------------------
T ss_pred             CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc-------------------
Confidence            555555555555554333335555555555555555543322 234444444444444442                   


Q ss_pred             CCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccc
Q 040195          292 SLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSS  371 (472)
Q Consensus       292 ~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  371 (472)
                                             .+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.......
T Consensus       161 -----------------------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  217 (353)
T 2z80_A          161 -----------------------TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF  217 (353)
T ss_dssp             -----------------------SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHH
T ss_pred             -----------------------cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhh
Confidence                                   234444455667777788888877777666777777788888888888776433333


Q ss_pred             hhcccccCeeeccCCcccccCCcCc---cCCCCCceEeecCCcccc----cCChhhhhhcccceEEEcCCCccccccccc
Q 040195          372 LGNLTKLANLELSSNSLQGNIPLSV---GNCQNLIGFDASHITLTG----ALPQQLLSITTLSLYLDLSHNLLNGSLLLQ  444 (472)
Q Consensus       372 l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~ls~~~~~~----~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~  444 (472)
                      +..+++|++|++++|.+++..+..+   ...+.++.++++++.+.+    .+|..+..+++++ .|++++|+++......
T Consensus       218 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~-~L~Ls~N~l~~i~~~~  296 (353)
T 2z80_A          218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL-ELEFSRNQLKSVPDGI  296 (353)
T ss_dssp             HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC-EEECCSSCCCCCCTTT
T ss_pred             hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCC-EEECCCCCCCccCHHH
Confidence            4457788888888887774333222   235677788888877763    3566777888888 8999999888544444


Q ss_pred             ccCCCCCceEeccCCeeccccC
Q 040195          445 VGNLKNLILLDISGNQFSGVIP  466 (472)
Q Consensus       445 l~~~~~L~~L~L~~n~~~~~~p  466 (472)
                      |..+++|+.|++++|+++...|
T Consensus       297 ~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          297 FDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTTCTTCCEEECCSSCBCCCHH
T ss_pred             HhcCCCCCEEEeeCCCccCcCC
Confidence            6888899999999998875543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.5e-26  Score=219.08  Aligned_cols=204  Identities=23%  Similarity=0.267  Sum_probs=119.7

Q ss_pred             CCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEE
Q 040195           61 LSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA  140 (472)
Q Consensus        61 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  140 (472)
                      ++.....+.+++.++ .+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.++...+..+.++++|++|+
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            344445666666666 3343332  4677777777777655455667777777777777777655556677777777777


Q ss_pred             ccccCCCCCCCccccCCCCccEEEecCCccccccc-cccccCCCccEEEccCCc-cccccccccccChhhhcCCCCccEE
Q 040195          141 LYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIP-TTLGLLRNLVYLNVNENQ-FWYVSSFSGSLPFDILVNLPNLKKL  218 (472)
Q Consensus       141 l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~L~~L  218 (472)
                      +++|.+++..+..+..+++|++|++++|.++.... ..+..+++|++|++++|. +       ..++...+..+++|++|
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~-------~~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF-------TKIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-------CEECTTTTTTCCEEEEE
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc-------cccCHHHccCCCCCCEE
Confidence            77777764434446667777777777776663322 355666666666666663 3       22333344455666666


Q ss_pred             EcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195          219 CIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       219 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  274 (472)
                      ++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.
T Consensus       180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred             ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence            66666665555555555666666666665554333323334455555555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=3.5e-26  Score=212.26  Aligned_cols=242  Identities=24%  Similarity=0.309  Sum_probs=209.3

Q ss_pred             ccccceeeCC---------CCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccC--cchhhhcCCCCCEEEcc
Q 040195           26 CQWMGVTCGH---------RHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGE--IPQEIGNLYRLEKLELS   94 (472)
Q Consensus        26 ~~~~~~~~~~---------~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~L~   94 (472)
                      |.|.++.|..         ..+++++|+++++.+.......+.++++|++|++++|.+...  .+..+..+++|++|+++
T Consensus         7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            6777777743         236899999999999887777889999999999999988743  25677889999999999


Q ss_pred             CcccCCCCCcccCCCCCCcEEEcccCcCcccCC-ccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccc-
Q 040195           95 NNSFSGTIPTNLSRCSELTHLRVANNKLEGQIP-KEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGG-  172 (472)
Q Consensus        95 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~-  172 (472)
                      +|.+. ..+..+..+++|++|++++|.++...+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ 
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            99987 566678899999999999999985443 578899999999999999987788888999999999999999976 


Q ss_pred             ccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccc
Q 040195          173 KIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGK  252 (472)
Q Consensus       173 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~  252 (472)
                      ..+..+..+++|++|++++|.+..       ++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQ-------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCE-------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             cchhHHhhCcCCCEEECCCCCcCC-------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            567888999999999999998743       4445667889999999999999987777789999999999999999988


Q ss_pred             ccccccccC-CCCeEEcCCCcCCC
Q 040195          253 VSIDFSSLK-NLAVLNLERNNLGI  275 (472)
Q Consensus       253 ~~~~l~~l~-~L~~L~l~~~~~~~  275 (472)
                      .+..+..++ +|++|++++|++..
T Consensus       239 ~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          239 KKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             SSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CHHHHHhhhccCCEEEccCCCeec
Confidence            888888885 99999999999863

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=4.2e-26  Score=211.67  Aligned_cols=248  Identities=23%  Similarity=0.278  Sum_probs=129.7

Q ss_pred             cEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccccccc--CCccCcCCCC
Q 040195          161 QVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGS--IPDSLSNASN  238 (472)
Q Consensus       161 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~l~~~~~  238 (472)
                      +.++.+++.++ .+|..+  .++|++|++++|.+       ..++...+..+++|++|++++|.+...  .+..+..+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l-------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~   79 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKL-------QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS   79 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCC-------CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred             CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCcc-------CccCHhHhhccccCCEEECCCCccCcccCcccccccccc
Confidence            35666666665 334332  25777777777776       344445566677777777777766532  1344556677


Q ss_pred             CCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccC
Q 040195          239 LELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILG  318 (472)
Q Consensus       239 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~  318 (472)
                      |++|++++|.+.. .+..+..+++|++|++++|.+......                  ......++++.|++++|.+..
T Consensus        80 L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~------------------~~~~~l~~L~~L~l~~n~l~~  140 (306)
T 2z66_A           80 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF------------------SVFLSLRNLIYLDISHTHTRV  140 (306)
T ss_dssp             CCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTT------------------TTTTTCTTCCEEECTTSCCEE
T ss_pred             cCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccc------------------hhhhhccCCCEEECCCCcCCc
Confidence            7777777777663 334466677777777777665421100                  000111245555555555544


Q ss_pred             cccccccCccCcceEecccccccc-CcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCcc
Q 040195          319 IIHFGIRNLVNLIALGMQSNQLHG-TIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVG  397 (472)
Q Consensus       319 ~~~~~l~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  397 (472)
                      ..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+.
T Consensus       141 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  220 (306)
T 2z66_A          141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK  220 (306)
T ss_dssp             CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred             cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence            444444455555555555555443 2344444555555555555555444444444555555555555555433333444


Q ss_pred             CCCCCceEeecCCcccccCChhhhhhc-ccceEEEcCCCccc
Q 040195          398 NCQNLIGFDASHITLTGALPQQLLSIT-TLSLYLDLSHNLLN  438 (472)
Q Consensus       398 ~~~~L~~L~ls~~~~~~~~~~~l~~~~-~l~~~L~ls~n~l~  438 (472)
                      .+++|+.|++++|.+.+..+..+..++ +++ .|++++|+++
T Consensus       221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~-~L~L~~N~~~  261 (306)
T 2z66_A          221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLA-FLNLTQNDFA  261 (306)
T ss_dssp             TCTTCCEEECTTSCCCBCSSSSCCCCCTTCC-EEECTTCCEE
T ss_pred             CcccCCEeECCCCCCcccCHHHHHhhhccCC-EEEccCCCee
Confidence            455555555555555444444444442 444 5555555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=7.5e-26  Score=207.72  Aligned_cols=224  Identities=22%  Similarity=0.222  Sum_probs=192.6

Q ss_pred             EEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccC
Q 040195           41 TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN  120 (472)
Q Consensus        41 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~  120 (472)
                      ++++.+++.+......   ..++|++|+++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            6788888887665432   3568999999999998777788999999999999999988777888999999999999999


Q ss_pred             c-CcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccc
Q 040195          121 K-LEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSS  199 (472)
Q Consensus       121 ~-~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~  199 (472)
                      . +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.    
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----  166 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS----  166 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc----
Confidence            7 77566778899999999999999998777888889999999999999998666667888999999999999874    


Q ss_pred             cccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195          200 FSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       200 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  274 (472)
                         .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.
T Consensus       167 ---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          167 ---SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ---ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence               444555778899999999999999888888999999999999999998766667889999999999999875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=9e-26  Score=207.16  Aligned_cols=249  Identities=21%  Similarity=0.198  Sum_probs=123.9

Q ss_pred             CccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccc-ccccCCccCcCCC
Q 040195          159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENN-FVGSIPDSLSNAS  237 (472)
Q Consensus       159 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~  237 (472)
                      +|++|++++|.+++..+..+..+++|++|++++|.+..       +....+..+++|++|++++|. +....+..+..++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~  105 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-------IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG  105 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-------ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce-------eCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence            44444444444443333334444444444444444311       111223334444444444443 3333344455555


Q ss_pred             CCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeeccccc
Q 040195          238 NLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQIL  317 (472)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~  317 (472)
                      +|++|++++|.++...+..+..+++|++|++++|.+.                                           
T Consensus       106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------------------------  142 (285)
T 1ozn_A          106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-------------------------------------------  142 (285)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------------------------
T ss_pred             CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-------------------------------------------
Confidence            5555555555555444444555555555555554432                                           


Q ss_pred             CcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCcc
Q 040195          318 GIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVG  397 (472)
Q Consensus       318 ~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  397 (472)
                      ...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+.
T Consensus       143 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  222 (285)
T 1ozn_A          143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA  222 (285)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred             ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcc
Confidence            22222344555566666666655544444555666666666666666655566666666666666666666643334456


Q ss_pred             CCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccC--CCCCceEeccCC
Q 040195          398 NCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGN--LKNLILLDISGN  459 (472)
Q Consensus       398 ~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~--~~~L~~L~L~~n  459 (472)
                      .+++|+.|++++|++....+. ......++ .+..+.+.+....|+.+.+  +..++..++.+|
T Consensus       223 ~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~-~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          223 PLRALQYLRLNDNPWVCDCRA-RPLWAWLQ-KFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             TCTTCCEEECCSSCEECSGGG-HHHHHHHH-HCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             cCcccCEEeccCCCccCCCCc-HHHHHHHH-hcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            666666666666666522111 11112233 4445556665555655543  344555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=1.6e-28  Score=249.67  Aligned_cols=157  Identities=16%  Similarity=0.180  Sum_probs=91.6

Q ss_pred             CCCceEEEECCCCccCccc---------------CccccCCCCccEEeccCCcCccCcchhhh-cCCCCCEEEccCc-cc
Q 040195           36 RHQRVTELDLSNQRIGGVL---------------SPYVGNLSFLRYINLSDNGFHGEIPQEIG-NLYRLEKLELSNN-SF   98 (472)
Q Consensus        36 ~~~~l~~L~l~~~~~~~~~---------------~~~l~~~~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~~-~~   98 (472)
                      +++++++|+++++......               ......+++|++|+++++.+.+..+..+. .+++|++|++++| .+
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            3467777777776421111               01123567788888887776655445554 5778888888777 33


Q ss_pred             CCC-CCcccCCCCCCcEEEcccCcCcccCCccc----cCCCCCcEEEccccC--CCCC-CCccccCCCCccEEEecCCcc
Q 040195           99 SGT-IPTNLSRCSELTHLRVANNKLEGQIPKEI----GSLLKLQTLALYYNN--LTGQ-LPDFVGNLSALQVIYIRGNSL  170 (472)
Q Consensus        99 ~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~--i~~~-~~~~l~~~~~L~~L~l~~~~~  170 (472)
                      .+. .+..+..+++|++|++++|.++...+..+    ..+++|++|+++++.  +... ....+..+++|++|++++|..
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            321 23334467788888888777654333222    356678888887775  2111 111123457788888877732


Q ss_pred             ccccccccccCCCccEEEccCC
Q 040195          171 GGKIPTTLGLLRNLVYLNVNEN  192 (472)
Q Consensus       171 ~~~~~~~l~~~~~L~~L~l~~~  192 (472)
                      .+..+..+..+++|++|++..+
T Consensus       224 ~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          224 LEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             HHHHHHHHHHCTTCSEEECSBC
T ss_pred             HHHHHHHHhcCCcceEcccccc
Confidence            2235556667777777776554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2e-25  Score=208.50  Aligned_cols=235  Identities=21%  Similarity=0.268  Sum_probs=176.4

Q ss_pred             CCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccccccccc
Q 040195          181 LRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSL  260 (472)
Q Consensus       181 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l  260 (472)
                      .++++.|++++|.+.       .+|.. +..+++|++|++++|.++ .+|..++.+++|++|++++|.++ ..+..+..+
T Consensus        80 ~~~l~~L~L~~n~l~-------~lp~~-l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l  149 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-------QFPDQ-AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASL  149 (328)
T ss_dssp             STTCCEEEEESSCCS-------SCCSC-GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGC
T ss_pred             ccceeEEEccCCCch-------hcChh-hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcC
Confidence            356777777777663       33322 234667777777777776 55666677777777777777766 445566677


Q ss_pred             CCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEecccccc
Q 040195          261 KNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQL  340 (472)
Q Consensus       261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i  340 (472)
                      ++|++|++++|++...                  +|.       .+....         ....+..+++|++|++++|.+
T Consensus       150 ~~L~~L~L~~n~~~~~------------------~p~-------~~~~~~---------~~~~~~~l~~L~~L~L~~n~l  195 (328)
T 4fcg_A          150 NRLRELSIRACPELTE------------------LPE-------PLASTD---------ASGEHQGLVNLQSLRLEWTGI  195 (328)
T ss_dssp             TTCCEEEEEEETTCCC------------------CCS-------CSEEEC----------CCCEEESTTCCEEEEEEECC
T ss_pred             cCCCEEECCCCCCccc------------------cCh-------hHhhcc---------chhhhccCCCCCEEECcCCCc
Confidence            7777777776554321                  111       111110         112345688999999999998


Q ss_pred             ccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhh
Q 040195          341 HGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQL  420 (472)
Q Consensus       341 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l  420 (472)
                      . .+|..++.+++|++|++++|.+. .++..+..+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+
T Consensus       196 ~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~  273 (328)
T 4fcg_A          196 R-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI  273 (328)
T ss_dssp             C-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred             C-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh
Confidence            8 77778888999999999999988 466678889999999999999888888889999999999999998888889889


Q ss_pred             hhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeec
Q 040195          421 LSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS  462 (472)
Q Consensus       421 ~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~  462 (472)
                      ..+++|+ .|++++|++.+.+|..+.++++|+.+++..+.+.
T Consensus       274 ~~l~~L~-~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          274 HRLTQLE-KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             GGCTTCC-EEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hcCCCCC-EEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            9999999 9999999988899999999999999999887654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=6.6e-25  Score=214.91  Aligned_cols=248  Identities=21%  Similarity=0.203  Sum_probs=137.4

Q ss_pred             CCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecC
Q 040195           88 LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRG  167 (472)
Q Consensus        88 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~  167 (472)
                      ...++.++..+. .+|..+.  +++++|++++|.++...+..|.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            456666666665 4454332  5677777777777655566666777777777777766655556666666666666666


Q ss_pred             CccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCC
Q 040195          168 NSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGN  247 (472)
Q Consensus       168 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~  247 (472)
                      |.++...+..+..+++|++|++++|.+.       .++...+..+++|+.|++++|.                       
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~~~-----------------------  182 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-------SIPSYAFNRVPSLMRLDLGELK-----------------------  182 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCCCT-----------------------
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcc-------eeCHhHHhcCCcccEEeCCCCC-----------------------
Confidence            6666444444555666666666666542       2223334444444444444422                       


Q ss_pred             cccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCc
Q 040195          248 QFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNL  327 (472)
Q Consensus       248 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~  327 (472)
                      .+.......+..+++|++|++++|.+...                   +. + ...++|+.|++++|.++...+..|..+
T Consensus       183 ~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-------------------~~-~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l  241 (452)
T 3zyi_A          183 KLEYISEGAFEGLFNLKYLNLGMCNIKDM-------------------PN-L-TPLVGLEELEMSGNHFPEIRPGSFHGL  241 (452)
T ss_dssp             TCCEECTTTTTTCTTCCEEECTTSCCSSC-------------------CC-C-TTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred             CccccChhhccCCCCCCEEECCCCccccc-------------------cc-c-cccccccEEECcCCcCcccCcccccCc
Confidence            22222223344445555555554444310                   00 0 000134444444444444444556666


Q ss_pred             cCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccc
Q 040195          328 VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ  389 (472)
Q Consensus       328 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~  389 (472)
                      ++|+.|++++|.+.+..+..|..+++|++|+|++|.+++..+..+..+++|++|++++|++.
T Consensus       242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            66666666666666555666666666666666666666555555566666666666666655

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=4.6e-25  Score=215.23  Aligned_cols=247  Identities=23%  Similarity=0.240  Sum_probs=144.1

Q ss_pred             ccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCC
Q 040195          160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNL  239 (472)
Q Consensus       160 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L  239 (472)
                      .+.++..+..++ .+|..+.  ++++.|++++|.+.       .++...+..+++|++|++++|.+....+..|.++++|
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L  114 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-------IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL  114 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-------EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-------eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccC
Confidence            344555555554 3333332  45566666666552       2223334455555555555555554444555555555


Q ss_pred             CEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCc
Q 040195          240 ELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGI  319 (472)
Q Consensus       240 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~  319 (472)
                      ++|++++|.++......|..+++|++|++++|.                                           +..+
T Consensus       115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------------------------------------------i~~~  151 (440)
T 3zyj_A          115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-------------------------------------------IESI  151 (440)
T ss_dssp             CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-------------------------------------------CCEE
T ss_pred             CEEECCCCcCCeeCHhHhhccccCceeeCCCCc-------------------------------------------cccc
Confidence            555555555554444445555555555555554                                           4444


Q ss_pred             ccccccCccCcceEecccc-ccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccC
Q 040195          320 IHFGIRNLVNLIALGMQSN-QLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGN  398 (472)
Q Consensus       320 ~~~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  398 (472)
                      ....|..+++|++|++++| .+....+..|..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+..+..
T Consensus       152 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  229 (440)
T 3zyj_A          152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG  229 (440)
T ss_dssp             CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred             CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhcc
Confidence            4445566666666666664 333333345666677777777777666 333 3556667777777777766655666666


Q ss_pred             CCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeec
Q 040195          399 CQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS  462 (472)
Q Consensus       399 ~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~  462 (472)
                      +++|+.|++++|.+.+..+..+..+++|+ .|++++|+++...+..|..+++|+.|+|++|++.
T Consensus       230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          230 LMHLQKLWMIQSQIQVIERNAFDNLQSLV-EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTCCEEECTTCCCCEECTTSSTTCTTCC-EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CccCCEEECCCCceeEEChhhhcCCCCCC-EEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            77777777777776655556666666676 7777777776665566666777777777777653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=5.8e-25  Score=215.27  Aligned_cols=228  Identities=21%  Similarity=0.177  Sum_probs=201.7

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV  117 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l  117 (472)
                      ++++.|++++|.+....+..|..+++|++|+|++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            68999999999999988899999999999999999999888889999999999999999998777777999999999999


Q ss_pred             ccCcCcccCCccccCCCCCcEEEcccc-CCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcccc
Q 040195          118 ANNKLEGQIPKEIGSLLKLQTLALYYN-NLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY  196 (472)
Q Consensus       118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~-~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  196 (472)
                      ++|.+....+..+.++++|++|+++++ .+....+..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+. 
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~-  231 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP-  231 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCS-
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCc-
Confidence            999998666678999999999999984 45544445688899999999999999743  45788999999999999983 


Q ss_pred             ccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195          197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  274 (472)
                            .++...+..+++|+.|++++|.+....+..|..+++|+.|++++|.++......+..+++|+.|++++|++.
T Consensus       232 ------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          232 ------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence                  444566788999999999999999888888999999999999999999777778889999999999999875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=4.1e-28  Score=246.55  Aligned_cols=402  Identities=14%  Similarity=0.108  Sum_probs=262.8

Q ss_pred             CCCceEEEECCCCccCcccCcccc-CCCCccEEeccCC-cCccC-cchhhhcCCCCCEEEccCcccCCCCCccc----CC
Q 040195           36 RHQRVTELDLSNQRIGGVLSPYVG-NLSFLRYINLSDN-GFHGE-IPQEIGNLYRLEKLELSNNSFSGTIPTNL----SR  108 (472)
Q Consensus        36 ~~~~l~~L~l~~~~~~~~~~~~l~-~~~~L~~L~L~~~-~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~l----~~  108 (472)
                      .++++++|+++++.+.+.....+. .+++|++|++++| .+... .+..+.++++|++|++++|.+.+..+..+    ..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            347899999999998876666665 6899999999998 44432 34445689999999999998775444333    46


Q ss_pred             CCCCcEEEcccCc--Ccc-cCCccccCCCCCcEEEcccc-CCCCCCCccccCCCCccEEEecCCc-------cccccccc
Q 040195          109 CSELTHLRVANNK--LEG-QIPKEIGSLLKLQTLALYYN-NLTGQLPDFVGNLSALQVIYIRGNS-------LGGKIPTT  177 (472)
Q Consensus       109 l~~L~~L~l~~~~--~~~-~~~~~l~~l~~L~~L~l~~~-~i~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~  177 (472)
                      +++|++|++++|.  +.. .+...+..+++|++|++++| .+. ..+..+..+++|++|.+..+.       +. ..+..
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~  260 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVA  260 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHH-HHHHH
Confidence            7899999999986  221 11222345799999999988 343 366777789999999976553       22 23346


Q ss_pred             cccCCCccEE-EccCCccccccccccccChhhhcCCCCccEEEcccccccccC-CccCcCCCCCCEEecCCCcccccccc
Q 040195          178 LGLLRNLVYL-NVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI-PDSLSNASNLELLELAGNQFEGKVSI  255 (472)
Q Consensus       178 l~~~~~L~~L-~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~  255 (472)
                      +..+++|+.+ .+.+...       ..+ ......+++|++|++++|.++... ...+..+++|++|++++| +.+....
T Consensus       261 l~~~~~L~~Ls~~~~~~~-------~~l-~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~  331 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVP-------AYL-PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLE  331 (594)
T ss_dssp             HHTCTTCCEEECCBTCCG-------GGG-GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHH
T ss_pred             HhcCCCcccccCCcccch-------hhH-HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHH
Confidence            7788899988 3333221       111 123345789999999999865432 223567899999999987 4433333


Q ss_pred             cc-cccCCCCeEEcCCCcCCC-CCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCccccccc-CccCcce
Q 040195          256 DF-SSLKNLAVLNLERNNLGI-GTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIR-NLVNLIA  332 (472)
Q Consensus       256 ~l-~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~-~~~~L~~  332 (472)
                      .+ ..+++|++|++.++.-.+ .....+...          ....+....++|+.|.+..+.++......+. .+++|+.
T Consensus       332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~----------~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~  401 (594)
T 2p1m_B          332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQ----------GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR  401 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCTTCSSCSSCCCHH----------HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred             HHHHhCCCCCEEEEecCcccccccCCCCCHH----------HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence            23 358899999985532100 000000000          0011122234788888877777765444444 4788888


Q ss_pred             Eecc--c----cccccC-----cchhhcCCCCCcEEEccCCcCccccccchhc-ccccCeeeccCCcccccCCcCc-cCC
Q 040195          333 LGMQ--S----NQLHGT-----IPDVIGELKNLQILSLFGNFLHGSIPSSLGN-LTKLANLELSSNSLQGNIPLSV-GNC  399 (472)
Q Consensus       333 L~l~--~----~~i~~~-----~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~-~~~  399 (472)
                      |+++  +    +.+++.     .+..+..+++|++|++++ .+++.....+.. +++|++|++++|.+++.....+ ..+
T Consensus       402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  480 (594)
T 2p1m_B          402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC  480 (594)
T ss_dssp             EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred             eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence            8888  3    344421     122356678899999877 565555555554 7889999998888875444333 568


Q ss_pred             CCCceEeecCCcccccCCh-hhhhhcccceEEEcCCCcccccccccc-cCCCCCceEeccCCe
Q 040195          400 QNLIGFDASHITLTGALPQ-QLLSITTLSLYLDLSHNLLNGSLLLQV-GNLKNLILLDISGNQ  460 (472)
Q Consensus       400 ~~L~~L~ls~~~~~~~~~~-~l~~~~~l~~~L~ls~n~l~~~~~~~l-~~~~~L~~L~L~~n~  460 (472)
                      ++|++|++++|++++..+. ....+++|+ .|++++|+++......+ ..+++|+...+..+.
T Consensus       481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          481 DSLRKLEIRDCPFGDKALLANASKLETMR-SLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             TTCCEEEEESCSCCHHHHHHTGGGGGGSS-EEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCcCEEECcCCCCcHHHHHHHHHhCCCCC-EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            8899999999888643333 334478888 89998888865544445 456777666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.5e-24  Score=211.63  Aligned_cols=228  Identities=21%  Similarity=0.200  Sum_probs=201.2

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV  117 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l  117 (472)
                      ++++.|++++|.+....+..|..+++|++|+|++|.+....+.+|.++++|++|++++|.+....+..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            67899999999999988899999999999999999999888889999999999999999998666677999999999999


Q ss_pred             ccCcCcccCCccccCCCCCcEEEcccc-CCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcccc
Q 040195          118 ANNKLEGQIPKEIGSLLKLQTLALYYN-NLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY  196 (472)
Q Consensus       118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~-~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  196 (472)
                      ++|.+....+..+.++++|++|+++++ .+....+..+..+++|++|++++|.++. .+ .+..+++|++|++++|.+. 
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~-  220 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS-  220 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCC-
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccC-
Confidence            999998766678999999999999985 4544445578899999999999999873 33 5788999999999999884 


Q ss_pred             ccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195          197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  274 (472)
                            .++...+..+++|+.|++++|.+++..+..|..+++|+.|++++|.++......+..+++|+.|++++|++.
T Consensus       221 ------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          221 ------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence                  344456778999999999999999888888999999999999999999877778899999999999999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.8e-26  Score=215.01  Aligned_cols=238  Identities=18%  Similarity=0.162  Sum_probs=109.8

Q ss_pred             cCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCc
Q 040195          155 GNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLS  234 (472)
Q Consensus       155 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~  234 (472)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.+.....         +..+++|+.|++++|.+++..     
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------~~~l~~L~~L~Ls~n~l~~l~-----   96 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---------LESLSTLRTLDLNNNYVQELL-----   96 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---------ETTCTTCCEEECCSSEEEEEE-----
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---------hhhcCCCCEEECcCCcccccc-----
Confidence            344556666666666655444555566666666666665432210         334555555555555554321     


Q ss_pred             CCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecc
Q 040195          235 NASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGN  314 (472)
Q Consensus       235 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~  314 (472)
                      ..++|+.|++++|.++.....   .+++|++|++++|.+                                         
T Consensus        97 ~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l-----------------------------------------  132 (317)
T 3o53_A           97 VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKI-----------------------------------------  132 (317)
T ss_dssp             ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCC-----------------------------------------
T ss_pred             CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCC-----------------------------------------
Confidence            225555555555555433222   234455555555444                                         


Q ss_pred             cccCcccccccCccCcceEeccccccccCcchhh-cCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCC
Q 040195          315 QILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI-GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIP  393 (472)
Q Consensus       315 ~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  393 (472)
                        +...+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++ ++
T Consensus       133 --~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~  207 (317)
T 3o53_A          133 --TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MG  207 (317)
T ss_dssp             --CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-EC
T ss_pred             --CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-ch
Confidence              44333344444444444444444443333332 2344444444444444422 1 11224444444444444442 22


Q ss_pred             cCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCccc-ccccccccCCCCCceEecc
Q 040195          394 LSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLN-GSLLLQVGNLKNLILLDIS  457 (472)
Q Consensus       394 ~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~-~~~~~~l~~~~~L~~L~L~  457 (472)
                      ..+..+++|+.|++++|.+. .+|..+..+++++ .|++++|++. +..+..+..+++|+.++++
T Consensus       208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~-~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE-HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC-EEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             hhhcccCcccEEECcCCccc-chhhHhhcCCCCC-EEEccCCCccCcCHHHHHhccccceEEECC
Confidence            23444444444444444444 3444444444444 4444444444 3334444444444444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=6.3e-26  Score=211.30  Aligned_cols=226  Identities=20%  Similarity=0.175  Sum_probs=162.4

Q ss_pred             CCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhccc
Q 040195          211 NLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNC  290 (472)
Q Consensus       211 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  290 (472)
                      .+++|++|++++|.+++..+..|..+++|++|++++|.+++..+  +..+++|++|++++|.+...              
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l--------------   95 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL--------------   95 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE--------------
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc--------------
Confidence            34445555555555544444445555555555555555543222  45555555555555544310              


Q ss_pred             CCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCcccccc
Q 040195          291 SSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPS  370 (472)
Q Consensus       291 ~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  370 (472)
                           +     ..++++.|++++|.++.....   .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus        96 -----~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (317)
T 3o53_A           96 -----L-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (317)
T ss_dssp             -----E-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred             -----c-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence                 0     002566666666666554332   367899999999999987777888899999999999999877666


Q ss_pred             ch-hcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCC
Q 040195          371 SL-GNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLK  449 (472)
Q Consensus       371 ~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~  449 (472)
                      .+ ..+++|++|++++|.+++. + ....+++|++|++++|.+. .++..+..+++++ .|++++|+++ .+|..+..++
T Consensus       163 ~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~-~L~L~~N~l~-~l~~~~~~l~  237 (317)
T 3o53_A          163 ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT-WISLRNNKLV-LIEKALRFSQ  237 (317)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCS-EEECTTSCCC-EECTTCCCCT
T ss_pred             HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCccc-EEECcCCccc-chhhHhhcCC
Confidence            66 4789999999999999854 3 3345899999999999999 5667799999999 9999999999 4677899999


Q ss_pred             CCceEeccCCeec-cccCCccc
Q 040195          450 NLILLDISGNQFS-GVIPVTLS  470 (472)
Q Consensus       450 ~L~~L~L~~n~~~-~~~p~~~~  470 (472)
                      +|+.|++++|+++ +.+|..++
T Consensus       238 ~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          238 NLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             TCCEEECTTCCCBHHHHHHHHH
T ss_pred             CCCEEEccCCCccCcCHHHHHh
Confidence            9999999999998 66665544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=4e-24  Score=214.69  Aligned_cols=268  Identities=25%  Similarity=0.324  Sum_probs=183.3

Q ss_pred             CCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEc
Q 040195          110 SELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV  189 (472)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  189 (472)
                      .++++|+++++.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|.++. ++.   .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence            35788999998888 5666554  78999999998887 4554   56888999999888873 443   6688888888


Q ss_pred             cCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcC
Q 040195          190 NENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLE  269 (472)
Q Consensus       190 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  269 (472)
                      ++|.+..+.       .    .+++|+.|++++|.++. +|..   +++|++|++++|.++... .   .+++|+.|+++
T Consensus       109 s~N~l~~l~-------~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~  169 (622)
T 3g06_A          109 FSNPLTHLP-------A----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLP-A---LPSELCKLWAY  169 (622)
T ss_dssp             CSCCCCCCC-------C----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC-C---CCTTCCEEECC
T ss_pred             cCCcCCCCC-------C----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcC-C---ccCCCCEEECC
Confidence            888874432       2    45778888888888775 3332   478888888888776422 1   34678888888


Q ss_pred             CCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhc
Q 040195          270 RNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIG  349 (472)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~  349 (472)
                      +|.+..                   ++    ...++|+.|++++|.++.+..    ..++|+.|++++|.+.. ++.   
T Consensus       170 ~N~l~~-------------------l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~~---  218 (622)
T 3g06_A          170 NNQLTS-------------------LP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTS-LPA---  218 (622)
T ss_dssp             SSCCSC-------------------CC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS-CCC---
T ss_pred             CCCCCC-------------------Cc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccc-cCC---
Confidence            887752                   11    112367777777777765432    23677777777777763 332   


Q ss_pred             CCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceE
Q 040195          350 ELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLY  429 (472)
Q Consensus       350 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~  429 (472)
                      .+++|++|++++|.+++ ++   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|.++ .+|..+.++++++ .
T Consensus       219 ~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~-~  288 (622)
T 3g06_A          219 LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSET-T  288 (622)
T ss_dssp             CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTC-E
T ss_pred             CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccC-E
Confidence            24677777777777763 33   34567777777777776 4444   5667777777777777 6677777777777 7


Q ss_pred             EEcCCCcccccccccccCC
Q 040195          430 LDLSHNLLNGSLLLQVGNL  448 (472)
Q Consensus       430 L~ls~n~l~~~~~~~l~~~  448 (472)
                      |++++|++++..+..+..+
T Consensus       289 L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          289 VNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             EECCSCCCCHHHHHHHHHH
T ss_pred             EEecCCCCCCcCHHHHHhc
Confidence            7777777776666555433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.2e-24  Score=218.37  Aligned_cols=294  Identities=23%  Similarity=0.310  Sum_probs=193.0

Q ss_pred             CCCCCCCCCCCCCCCcccccceee------CCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhh
Q 040195           10 HDPSGVTSSWNNTINLCQWMGVTC------GHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIG   83 (472)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~   83 (472)
                      .|+......|.....+|+|.+..+      .-...+++.|+++++.+..... .+.  ++|++|++++|.+.. +|.   
T Consensus         6 ~~~~~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~lp~-~l~--~~L~~L~L~~N~l~~-lp~---   78 (622)
T 3g06_A            6 AEYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPD-CLP--AHITTLVIPDNNLTS-LPA---   78 (622)
T ss_dssp             ----CHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCSCCCS-CCC--TTCSEEEECSCCCSC-CCC---
T ss_pred             HHHHHHHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcCccCh-hhC--CCCcEEEecCCCCCC-CCC---
Confidence            345556678988889999965421      1112458899999999875533 333  789999999998874 443   


Q ss_pred             cCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEE
Q 040195           84 NLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVI  163 (472)
Q Consensus        84 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L  163 (472)
                      .+++|++|++++|.+. .+|.   .+++|++|++++|.++. ++.   .+++|+.|++++|.++. +|..   +++|++|
T Consensus        79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L  146 (622)
T 3g06_A           79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQEL  146 (622)
T ss_dssp             CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred             cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEE
Confidence            5788999999999887 4454   67889999999998873 444   56788899998888873 4442   4788888


Q ss_pred             EecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEe
Q 040195          164 YIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLE  243 (472)
Q Consensus       164 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~  243 (472)
                      ++++|.+++ ++.   .+++|+.|++++|.+..+       +    ..+++|+.|++++|.+++ ++.   ..++|+.|+
T Consensus       147 ~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-------~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~  207 (622)
T 3g06_A          147 SVSDNQLAS-LPA---LPSELCKLWAYNNQLTSL-------P----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLW  207 (622)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-------C----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             ECcCCcCCC-cCC---ccCCCCEEECCCCCCCCC-------c----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEE
Confidence            888888763 332   346788888888877433       2    245778888888887774 332   246778888


Q ss_pred             cCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCccccc
Q 040195          244 LAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFG  323 (472)
Q Consensus       244 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~  323 (472)
                      +++|.++... .   .+++|+.|++++|.++.                   +|    ...++|+.|++++|.++.+..  
T Consensus       208 L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~-------------------lp----~~l~~L~~L~Ls~N~L~~lp~--  258 (622)
T 3g06_A          208 AYNNRLTSLP-A---LPSGLKELIVSGNRLTS-------------------LP----VLPSELKELMVSGNRLTSLPM--  258 (622)
T ss_dssp             CCSSCCSSCC-C---CCTTCCEEECCSSCCSC-------------------CC----CCCTTCCEEECCSSCCSCCCC--
T ss_pred             CcCCcccccC-C---CCCCCCEEEccCCccCc-------------------CC----CCCCcCcEEECCCCCCCcCCc--
Confidence            8887776322 1   24667777777776652                   11    111356666666666664332  


Q ss_pred             ccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchh
Q 040195          324 IRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLG  373 (472)
Q Consensus       324 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  373 (472)
                        .+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+..+..+.
T Consensus       259 --~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          259 --LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             --CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             --ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence              4456666666666666 4455566666666666666666655544443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1e-23  Score=191.65  Aligned_cols=216  Identities=21%  Similarity=0.275  Sum_probs=140.2

Q ss_pred             CCcccccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCC
Q 040195           23 INLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTI  102 (472)
Q Consensus        23 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~  102 (472)
                      .++|.|.|+.|.- ..+.+.++++++.++.... .+  .+++++|++++|.+....+.+|.++++|++|++++|.+....
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTAIPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCCCccCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            3789999999842 2456789999988876433 22  257888888888888766677888888888888888887555


Q ss_pred             CcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCC
Q 040195          103 PTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLR  182 (472)
Q Consensus       103 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~  182 (472)
                      +..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..++
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  157 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT  157 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence            55567788888888888887755555667777788888877777765556666777777777777766644444455666


Q ss_pred             CccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcc
Q 040195          183 NLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQF  249 (472)
Q Consensus       183 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~  249 (472)
                      +|++|++++|.+.       .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus       158 ~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          158 SLKELRLYNNQLK-------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TCCEEECCSSCCS-------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccceeEecCCcCc-------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            6666666666542       22222333444444444444444433333344444444444444433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.2e-25  Score=208.89  Aligned_cols=270  Identities=16%  Similarity=0.144  Sum_probs=161.1

Q ss_pred             CCCCCCCCCcccccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCcc-Ccchhhh-------cCCC
Q 040195           16 TSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHG-EIPQEIG-------NLYR   87 (472)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~~~~~~-------~l~~   87 (472)
                      ..+|.....|+.+..+......++++.+++++|.+  ..+..+...  |++|+++++.+.. ..+..+.       ++++
T Consensus        21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~   96 (312)
T 1wwl_A           21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG   96 (312)
T ss_dssp             SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC
T ss_pred             ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC
Confidence            45676666666665554433445667777777776  333333332  7777777776632 2343333       5777


Q ss_pred             CCEEEccCcccCCCCCccc--CCCCCCcEEEcccCcCcccCCccccCC-----CCCcEEEccccCCCCCCCccccCCCCc
Q 040195           88 LEKLELSNNSFSGTIPTNL--SRCSELTHLRVANNKLEGQIPKEIGSL-----LKLQTLALYYNNLTGQLPDFVGNLSAL  160 (472)
Q Consensus        88 L~~L~L~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~i~~~~~~~l~~~~~L  160 (472)
                      |++|++++|.+.+..|..+  ..+++|++|++++|.+++. +..+..+     ++|++|++++|.+.+..+..+..+++|
T Consensus        97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  175 (312)
T 1wwl_A           97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL  175 (312)
T ss_dssp             CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred             ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence            7777777777776666654  6777777777777777744 5555555     677777777777776655667777777


Q ss_pred             cEEEecCCccccc--ccccc--ccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCC-ccCcC
Q 040195          161 QVIYIRGNSLGGK--IPTTL--GLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIP-DSLSN  235 (472)
Q Consensus       161 ~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~  235 (472)
                      ++|++++|.+.+.  .+..+  ..+++|++|++++|.+..+.    .++...+..+++|+.|++++|.+.+..+ ..+..
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS----GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH----HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH----HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            7777777765432  12222  56667777777777654321    1222333445566666666665554332 23334


Q ss_pred             CCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeeccc
Q 040195          236 ASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQ  315 (472)
Q Consensus       236 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~  315 (472)
                      +++|++|++++|.++ ..+..+.  +                                           +++.|++++|.
T Consensus       252 l~~L~~L~Ls~N~l~-~ip~~~~--~-------------------------------------------~L~~L~Ls~N~  285 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK-QVPKGLP--A-------------------------------------------KLSVLDLSYNR  285 (312)
T ss_dssp             CTTCCEEECTTSCCS-SCCSSCC--S-------------------------------------------EEEEEECCSSC
T ss_pred             cCCCCEEECCCCccC-hhhhhcc--C-------------------------------------------CceEEECCCCC
Confidence            455555555555544 2222221  2                                           56666666666


Q ss_pred             ccCcccccccCccCcceEecccccccc
Q 040195          316 ILGIIHFGIRNLVNLIALGMQSNQLHG  342 (472)
Q Consensus       316 ~~~~~~~~l~~~~~L~~L~l~~~~i~~  342 (472)
                      ++.. +. +..+++|++|++++|.+++
T Consensus       286 l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          286 LDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            6655 22 6777888888888887764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.5e-25  Score=208.22  Aligned_cols=255  Identities=21%  Similarity=0.260  Sum_probs=171.7

Q ss_pred             cCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhh------hcCCCCccEEEccccccccc
Q 040195          155 GNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDI------LVNLPNLKKLCIAENNFVGS  228 (472)
Q Consensus       155 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~------~~~~~~L~~L~l~~~~l~~~  228 (472)
                      +..++|+.+++++|.+  ..|..+...  |+.|++++|.+...     .++...      +..+++|++|++++|.+++.
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~-----~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  110 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAA-----RIPSRILFGALRVLGISGLQELTLENLEVTGT  110 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEE-----ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCC-----CcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence            3445566666666666  344433332  66666666655322     111111      11345566666666655544


Q ss_pred             CCccC--cCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccc
Q 040195          229 IPDSL--SNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTM  306 (472)
Q Consensus       229 ~~~~l--~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  306 (472)
                      .|..+  ..+++|++|++++|.+++. +..+..++.                                      ...+++
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~--------------------------------------~~~~~L  151 (312)
T 1wwl_A          111 APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQ--------------------------------------WLKPGL  151 (312)
T ss_dssp             CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT--------------------------------------TCCTTC
T ss_pred             hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHH--------------------------------------hhcCCC
Confidence            44433  4555555555555555433 333333200                                      001366


Q ss_pred             cEEEeecccccCcccccccCccCcceEeccccccccC--cchhh--cCCCCCcEEEccCCcCccc---cccchhcccccC
Q 040195          307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGT--IPDVI--GELKNLQILSLFGNFLHGS---IPSSLGNLTKLA  379 (472)
Q Consensus       307 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~--~~~~~L~~L~L~~n~l~~~---~~~~l~~~~~L~  379 (472)
                      ++|++++|.+....+..+..+++|++|++++|.+.+.  .+..+  ..+++|++|++++|.+++.   ....+..+++|+
T Consensus       152 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~  231 (312)
T 1wwl_A          152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ  231 (312)
T ss_dssp             CEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred             cEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence            7777777777777767888999999999999987654  23333  7889999999999998732   223445779999


Q ss_pred             eeeccCCcccccCC-cCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccC
Q 040195          380 NLELSSNSLQGNIP-LSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISG  458 (472)
Q Consensus       380 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~  458 (472)
                      +|++++|.+++..+ ..+..+++|++|++++|.++ .+|..+.  ++++ .|++++|++++. |. +..+++|+.|++++
T Consensus       232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~-~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS-VLDLSYNRLDRN-PS-PDELPQVGNLSLKG  305 (312)
T ss_dssp             EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEE-EEECCSSCCCSC-CC-TTTSCEEEEEECTT
T ss_pred             EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCce-EEECCCCCCCCC-hh-HhhCCCCCEEeccC
Confidence            99999999997664 45667899999999999998 7887766  7888 999999999976 55 89999999999999


Q ss_pred             Ceecc
Q 040195          459 NQFSG  463 (472)
Q Consensus       459 n~~~~  463 (472)
                      |++++
T Consensus       306 N~l~~  310 (312)
T 1wwl_A          306 NPFLD  310 (312)
T ss_dssp             CTTTC
T ss_pred             CCCCC
Confidence            99975

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.8e-24  Score=212.92  Aligned_cols=235  Identities=18%  Similarity=0.179  Sum_probs=115.6

Q ss_pred             CCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccC
Q 040195          182 RNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLK  261 (472)
Q Consensus       182 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~  261 (472)
                      ++|++|++++|.+       ..++...+..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++.     ...+
T Consensus        34 ~~L~~L~Ls~n~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~   99 (487)
T 3oja_A           34 WNVKELDLSGNPL-------SQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGP   99 (487)
T ss_dssp             GGCCEEECCSSCC-------CCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECT
T ss_pred             CCccEEEeeCCcC-------CCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCC
Confidence            3566666666665       22333445556666666666666654333  55666666666666655532     2235


Q ss_pred             CCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccc
Q 040195          262 NLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLH  341 (472)
Q Consensus       262 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  341 (472)
                      +|+.|++++|.+......                      ..++++.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus       100 ~L~~L~L~~N~l~~~~~~----------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (487)
T 3oja_A          100 SIETLHAANNNISRVSCS----------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (487)
T ss_dssp             TCCEEECCSSCCCCEEEC----------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred             CcCEEECcCCcCCCCCcc----------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence            666666666655421100                      0124555555555555544444455555555555555555


Q ss_pred             cCcchhhc-CCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhh
Q 040195          342 GTIPDVIG-ELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQL  420 (472)
Q Consensus       342 ~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l  420 (472)
                      +..|..+. .+++|++|++++|.+++..  ....+++|+.|++++|.+++ ++..+..+++|+.|++++|.+. .+|..+
T Consensus       158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l  233 (487)
T 3oja_A          158 TVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKAL  233 (487)
T ss_dssp             EEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred             CcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhh
Confidence            44444433 3455555555555554331  12234555555555555542 2223444555555555555554 244444


Q ss_pred             hhhcccceEEEcCCCccc-ccccccccCCCCCceEecc
Q 040195          421 LSITTLSLYLDLSHNLLN-GSLLLQVGNLKNLILLDIS  457 (472)
Q Consensus       421 ~~~~~l~~~L~ls~n~l~-~~~~~~l~~~~~L~~L~L~  457 (472)
                      ..+++++ .|++++|.+. +..|..+..++.|+.++++
T Consensus       234 ~~l~~L~-~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          234 RFSQNLE-HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCCTTCC-EEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCCCCC-EEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            4444454 5555555444 3333444444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=3.8e-24  Score=210.66  Aligned_cols=235  Identities=18%  Similarity=0.143  Sum_probs=143.6

Q ss_pred             CCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCC
Q 040195          158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNAS  237 (472)
Q Consensus       158 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~  237 (472)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+....      +   +..+++|+.|++++|.+++..     ..+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~---l~~l~~L~~L~Ls~N~l~~l~-----~~~   99 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL------D---LESLSTLRTLDLNNNYVQELL-----VGP   99 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE------E---CTTCTTCCEEECCSSEEEEEE-----ECT
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc------c---cccCCCCCEEEecCCcCCCCC-----CCC
Confidence            36777777777776655566677777777777777653321      1   445667777777777666432     236


Q ss_pred             CCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeeccccc
Q 040195          238 NLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQIL  317 (472)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~  317 (472)
                      +|+.|++++|.+.+..+.   .+++|+.|++++|.++....                  ..+ ...++|+.|++++|.++
T Consensus       100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~------------------~~~-~~l~~L~~L~Ls~N~l~  157 (487)
T 3oja_A          100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD------------------LDE-GCRSRVQYLDLKLNEID  157 (487)
T ss_dssp             TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGG------------------BCG-GGGSSEEEEECTTSCCC
T ss_pred             CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCc------------------hhh-cCCCCCCEEECCCCCCC
Confidence            677777777766644332   34667777777776653111                  111 11236677777777776


Q ss_pred             Cccccccc-CccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCc
Q 040195          318 GIIHFGIR-NLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSV  396 (472)
Q Consensus       318 ~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  396 (472)
                      ...+..+. .+++|+.|++++|.+.+..+  ...+++|++|++++|.+++ ++..+..+++|+.|++++|.++ .+|..+
T Consensus       158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l  233 (487)
T 3oja_A          158 TVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKAL  233 (487)
T ss_dssp             EEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred             CcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhh
Confidence            65555554 56777777777777664422  2346777777777777764 3334666777777777777776 356666


Q ss_pred             cCCCCCceEeecCCccc-ccCChhhhhhcccceEEEcC
Q 040195          397 GNCQNLIGFDASHITLT-GALPQQLLSITTLSLYLDLS  433 (472)
Q Consensus       397 ~~~~~L~~L~ls~~~~~-~~~~~~l~~~~~l~~~L~ls  433 (472)
                      ..+++|+.|++++|++. +.+|..+..++.++ .++++
T Consensus       234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~-~l~~~  270 (487)
T 3oja_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ-TVAKQ  270 (487)
T ss_dssp             CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH-HHHHH
T ss_pred             ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc-EEecc
Confidence            66777777777777766 44555555555555 55554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=2e-22  Score=183.88  Aligned_cols=204  Identities=21%  Similarity=0.175  Sum_probs=112.9

Q ss_pred             CccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEcc
Q 040195           63 FLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALY  142 (472)
Q Consensus        63 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  142 (472)
                      +|++|++++|.+....+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45556665555554444455555566666666555554444455555666666666665554444555555666666666


Q ss_pred             ccCCCCCCCccccCCCCccEEEecCCccccc-cccccccCCCccEEEccCCccccccccccccChhhhcCCCCcc----E
Q 040195          143 YNNLTGQLPDFVGNLSALQVIYIRGNSLGGK-IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLK----K  217 (472)
Q Consensus       143 ~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~----~  217 (472)
                      +|.+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..+       +...+..+++|+    +
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~l~l~  181 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-------YCTDLRVLHQMPLLNLS  181 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-------CGGGGHHHHTCTTCCEE
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-------CHHHhhhhhhcccccee
Confidence            6555544444455556666666666655532 345555566666666666655332       112222222333    5


Q ss_pred             EEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195          218 LCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       218 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  274 (472)
                      |++++|.+.+..+..+. ..+|++|++++|.++......+..+++|++|++++|++.
T Consensus       182 L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          182 LDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             EECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             eecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            66666666644443332 336667777777666555555566677777777777665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=4.6e-22  Score=181.52  Aligned_cols=205  Identities=20%  Similarity=0.225  Sum_probs=180.5

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV  117 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l  117 (472)
                      +++++|++++|.+....+..+..+++|++|++++|.+....+..+.++++|++|++++|.+.+..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            57999999999999888888999999999999999998777788999999999999999998777788999999999999


Q ss_pred             ccCcCcccCCccccCCCCCcEEEccccCCCCC-CCccccCCCCccEEEecCCccccccccccccCCCcc----EEEccCC
Q 040195          118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQ-LPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLV----YLNVNEN  192 (472)
Q Consensus       118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~  192 (472)
                      ++|.+....+..+..+++|++|++++|.+.+. .|..+..+++|++|++++|.+++..+..+..+++|+    +|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            99999866666799999999999999999864 588999999999999999999877667777777777    8999999


Q ss_pred             ccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccc
Q 040195          193 QFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFE  250 (472)
Q Consensus       193 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~  250 (472)
                      .+..+       +...+ ...+|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       188 ~l~~~-------~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          188 PMNFI-------QPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CCCEE-------CTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             ccccc-------Ccccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            98544       33333 3348999999999999877777899999999999999987

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.3e-21  Score=177.81  Aligned_cols=203  Identities=25%  Similarity=0.314  Sum_probs=177.9

Q ss_pred             CccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEcc
Q 040195           63 FLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALY  142 (472)
Q Consensus        63 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  142 (472)
                      +.+.++++++.++. +|..+.  +++++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            57899999999884 554443  689999999999997767789999999999999999986656667899999999999


Q ss_pred             ccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccc
Q 040195          143 YNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAE  222 (472)
Q Consensus       143 ~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  222 (472)
                      +|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.       .++...+..+++|++|++++
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-------SLPKGVFDKLTSLKELRLYN  166 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCS
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-------ccCHhHccCCcccceeEecC
Confidence            99999777777889999999999999999777778899999999999999884       45556677899999999999


Q ss_pred             ccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCC
Q 040195          223 NNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGI  275 (472)
Q Consensus       223 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  275 (472)
                      |.++...+..|..+++|+.|++++|.++......+..+++|+.|++++|++.-
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            99998777789999999999999999987777778899999999999999864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=6.5e-22  Score=179.90  Aligned_cols=206  Identities=24%  Similarity=0.254  Sum_probs=114.9

Q ss_pred             CCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhccc
Q 040195          211 NLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNC  290 (472)
Q Consensus       211 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  290 (472)
                      .+++|+.|++.++.+...  ..++.+++|++|++++|.+++  ...+..+++|++|++++|.+.                
T Consensus        39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~----------------   98 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQ----------------   98 (272)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCC----------------
T ss_pred             cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccC----------------
Confidence            456677777777766532  235667777777777776654  234566666666666666554                


Q ss_pred             CCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCcccccc
Q 040195          291 SSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPS  370 (472)
Q Consensus       291 ~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  370 (472)
                                                 ...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus        99 ---------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  151 (272)
T 3rfs_A           99 ---------------------------SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG  151 (272)
T ss_dssp             ---------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ---------------------------ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence                                       33333344555555555555555544444455555555555555555544444


Q ss_pred             chhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCC
Q 040195          371 SLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKN  450 (472)
Q Consensus       371 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~  450 (472)
                      .+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++++ .|++++|++.+       .+++
T Consensus       152 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~N~~~~-------~~~~  223 (272)
T 3rfs_A          152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ-YIWLHDNPWDC-------TCPG  223 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC-EEECCSSCBCC-------CTTT
T ss_pred             HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC-EEEccCCCccc-------cCcH
Confidence            445555555555555555544444445555555555555555543334445555555 56665555542       2335


Q ss_pred             CceEeccCCeeccccCCcccc
Q 040195          451 LILLDISGNQFSGVIPVTLSI  471 (472)
Q Consensus       451 L~~L~L~~n~~~~~~p~~~~~  471 (472)
                      |+.++++.|.+++.+|..+++
T Consensus       224 l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          224 IRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             THHHHHHHHHTGGGBBCTTSC
T ss_pred             HHHHHHHHHhCCCcccCcccc
Confidence            555555666655555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.3e-23  Score=199.44  Aligned_cols=260  Identities=19%  Similarity=0.257  Sum_probs=146.4

Q ss_pred             EEccccCCCCCCCccccCCCCccEEEecCCccccccc----cccccCC-CccEEEccCCccccccccccccChhhhcC-C
Q 040195          139 LALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIP----TTLGLLR-NLVYLNVNENQFWYVSSFSGSLPFDILVN-L  212 (472)
Q Consensus       139 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~-~  212 (472)
                      +.++.+.+++..|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+.+...  ..+ ...+.. .
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--~~l-~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS--DEL-VQILAAIP   79 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH--HHH-HHHHHTSC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH--HHH-HHHHhccC
Confidence            5667777776666666566668888888888876555    5666777 78888888887744321  000 111222 2


Q ss_pred             CCccEEEcccccccccCCcc----CcCC-CCCCEEecCCCcccccccccccc-----cCCCCeEEcCCCcCCCCCCCCcc
Q 040195          213 PNLKKLCIAENNFVGSIPDS----LSNA-SNLELLELAGNQFEGKVSIDFSS-----LKNLAVLNLERNNLGIGTANDLG  282 (472)
Q Consensus       213 ~~L~~L~l~~~~l~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~~~~  282 (472)
                      ++|++|++++|.+++..+..    +..+ ++|++|++++|.+++.....+..     .++|++|++++|.++..+...  
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~--  157 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE--  157 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH--
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH--
Confidence            77888888888777544432    3344 67888888888776655544332     257777777777765322211  


Q ss_pred             hhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccc----cCc-cCcceEeccccccccCc----chhhcC-CC
Q 040195          283 FVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGI----RNL-VNLIALGMQSNQLHGTI----PDVIGE-LK  352 (472)
Q Consensus       283 ~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~~~i~~~~----~~~~~~-~~  352 (472)
                                  ++..+...++++++|++++|.++...+..+    ..+ ++|++|++++|.+.+..    +..+.. .+
T Consensus       158 ------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~  225 (362)
T 3goz_A          158 ------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN  225 (362)
T ss_dssp             ------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCT
T ss_pred             ------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCC
Confidence                        111122222356666666666655443322    233 36666666666665422    223333 34


Q ss_pred             CCcEEEccCCcCccccc----cchhcccccCeeeccCCcccc-------cCCcCccCCCCCceEeecCCccccc
Q 040195          353 NLQILSLFGNFLHGSIP----SSLGNLTKLANLELSSNSLQG-------NIPLSVGNCQNLIGFDASHITLTGA  415 (472)
Q Consensus       353 ~L~~L~L~~n~l~~~~~----~~l~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~ls~~~~~~~  415 (472)
                      +|++|++++|.+.+..+    ..+..+++|++|++++|.+.+       .++..+..+++|+.|++++|++.+.
T Consensus       226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            66666666666654322    223445566666666665321       1223444555566666666655543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=6.7e-23  Score=192.82  Aligned_cols=118  Identities=17%  Similarity=0.199  Sum_probs=57.5

Q ss_pred             ccCcc-CcceEecccc--ccc-cCcchhhcCCCCCcEEEccCCc-CccccccchhcccccCeeeccCCc-ccccCCcCcc
Q 040195          324 IRNLV-NLIALGMQSN--QLH-GTIPDVIGELKNLQILSLFGNF-LHGSIPSSLGNLTKLANLELSSNS-LQGNIPLSVG  397 (472)
Q Consensus       324 l~~~~-~L~~L~l~~~--~i~-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~  397 (472)
                      +..++ +|++|++++|  .+. ...+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.
T Consensus       190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~  269 (336)
T 2ast_B          190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG  269 (336)
T ss_dssp             HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred             HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence            44455 6666666666  233 2333444555666666666665 444445555555666666666663 2222222344


Q ss_pred             CCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccc
Q 040195          398 NCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV  445 (472)
Q Consensus       398 ~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l  445 (472)
                      .+++|+.|++++| +.+.....+.  ..+. .|++++|++++..|..+
T Consensus       270 ~~~~L~~L~l~~~-i~~~~~~~l~--~~l~-~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          270 EIPTLKTLQVFGI-VPDGTLQLLK--EALP-HLQINCSHFTTIARPTI  313 (336)
T ss_dssp             GCTTCCEEECTTS-SCTTCHHHHH--HHST-TSEESCCCSCCTTCSSC
T ss_pred             cCCCCCEEeccCc-cCHHHHHHHH--hhCc-ceEEecccCccccCCcc
Confidence            5556666666655 3321111111  1133 44455555555544443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=7.9e-21  Score=174.05  Aligned_cols=199  Identities=23%  Similarity=0.235  Sum_probs=103.4

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV  117 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l  117 (472)
                      +++++++++++.+.......   .+++++|++++|.+....+..+..+++|++|++++|.+....+  ...+++|++|++
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L   84 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL   84 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred             CCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence            45666666666655443221   1456666666666655555556666666666666665553221  145555555555


Q ss_pred             ccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccc
Q 040195          118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV  197 (472)
Q Consensus       118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  197 (472)
                      ++|.++ .++..+..+++|++|++++|.++...+..|..+++|++|++++|.++...+..|..+                
T Consensus        85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l----------------  147 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT----------------  147 (290)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC----------------
T ss_pred             CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc----------------
Confidence            555555 344445555555555555555554334444555555555555555543333334444                


Q ss_pred             cccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195          198 SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  274 (472)
                                     ++|+.|++++|.++...+..|..+++|+.|++++|.++ ..+..+...++|+.+++++|++.
T Consensus       148 ---------------~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          148 ---------------PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             ---------------TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ---------------cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence                           44555555555554443444455555555555555555 23333444555666666666553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=1.3e-20  Score=172.64  Aligned_cols=155  Identities=25%  Similarity=0.203  Sum_probs=136.8

Q ss_pred             CCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195           37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR  116 (472)
Q Consensus        37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~  116 (472)
                      .+++++|++++|.+....+..+..+++|++|++++|.+....+  ...+++|++|++++|.+. .+|..+..+++|++|+
T Consensus        30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence            3789999999999998888899999999999999999885433  378999999999999998 6788889999999999


Q ss_pred             cccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcc
Q 040195          117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF  194 (472)
Q Consensus       117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  194 (472)
                      +++|.++...+..|..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence            999999976667899999999999999999977777788999999999999999865555667788888888888876

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=8.2e-23  Score=193.94  Aligned_cols=261  Identities=21%  Similarity=0.259  Sum_probs=166.4

Q ss_pred             EEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCC----ccccCCC-CccEEEecCCccccccccccccC-----CC
Q 040195          114 HLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLP----DFVGNLS-ALQVIYIRGNSLGGKIPTTLGLL-----RN  183 (472)
Q Consensus       114 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~  183 (472)
                      +.+++++.+++..+..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35677777776666656555668888888888875555    5666777 78888888888876655555553     78


Q ss_pred             ccEEEccCCccccccccccccChhhhcCC-CCccEEEcccccccccCCcc----CcC-CCCCCEEecCCCccccccccc-
Q 040195          184 LVYLNVNENQFWYVSSFSGSLPFDILVNL-PNLKKLCIAENNFVGSIPDS----LSN-ASNLELLELAGNQFEGKVSID-  256 (472)
Q Consensus       184 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~----l~~-~~~L~~L~l~~~~~~~~~~~~-  256 (472)
                      |++|++++|.+.+...   ......+... ++|++|++++|.+++..+..    +.. .++|++|++++|.+++..... 
T Consensus        82 L~~L~Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSS---DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CCEEECCSSCGGGSCH---HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             ccEEECcCCcCChHHH---HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence            8888888887644321   0011223344 68888888888877654433    233 358888888888877544333 


Q ss_pred             ---ccccC-CCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcc----cccccC-c
Q 040195          257 ---FSSLK-NLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGII----HFGIRN-L  327 (472)
Q Consensus       257 ---l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~----~~~l~~-~  327 (472)
                         +...+ +|++|++++|.++..+...+              ...+...+++++.|++++|.++...    +..+.. .
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l--------------~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~  224 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAEL--------------AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP  224 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHH--------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSC
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHH--------------HHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCC
Confidence               34444 78888888887753221110              0111222237888888888877632    223333 3


Q ss_pred             cCcceEeccccccccCcc----hhhcCCCCCcEEEccCCcCccc-------cccchhcccccCeeeccCCccccc
Q 040195          328 VNLIALGMQSNQLHGTIP----DVIGELKNLQILSLFGNFLHGS-------IPSSLGNLTKLANLELSSNSLQGN  391 (472)
Q Consensus       328 ~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~L~~n~l~~~-------~~~~l~~~~~L~~L~l~~~~~~~~  391 (472)
                      ++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+.       ++..+..+++|++|++++|++...
T Consensus       225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            578888888888876544    3345667888888888874322       233456677788888888887754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=4.9e-21  Score=174.11  Aligned_cols=199  Identities=22%  Similarity=0.248  Sum_probs=124.5

Q ss_pred             ccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCc
Q 040195           58 VGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQ  137 (472)
Q Consensus        58 l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  137 (472)
                      +..+++|+.|+++++.+...  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.++...+..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            44566666666666665522  2456666667777766666532  3566666677777776666655445566666777


Q ss_pred             EEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccE
Q 040195          138 TLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK  217 (472)
Q Consensus       138 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~  217 (472)
                      +|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.       .++...+..+++|+.
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~  185 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-------SLPEGVFDKLTQLKD  185 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCE
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-------ccCHHHhcCCccCCE
Confidence            7777766666555555666667777777777666544455566667777777777652       333344556667777


Q ss_pred             EEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195          218 LCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       218 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  274 (472)
                      |++++|.+++..+..+..+++|+.|++++|.+.       +.+++|+.++++.|.++
T Consensus       186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~  235 (272)
T 3rfs_A          186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHS  235 (272)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTG
T ss_pred             EECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCC
Confidence            777777776665566667777777777777654       23556666666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=3.9e-23  Score=198.16  Aligned_cols=122  Identities=20%  Similarity=0.267  Sum_probs=63.5

Q ss_pred             CCccccCCCCccEEEecCCccccccc----cccccCCCccEEEccCCccccccccccccChh------hhcCCCCccEEE
Q 040195          150 LPDFVGNLSALQVIYIRGNSLGGKIP----TTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD------ILVNLPNLKKLC  219 (472)
Q Consensus       150 ~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~------~~~~~~~L~~L~  219 (472)
                      ++..+..+++|++|++++|.++...+    ..+..+++|++|++++|.+..+.   +.+|..      .+..+++|++|+
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~---~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK---DEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG---GGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccc---cchhHHHHHHHHHHhhCCcccEEE
Confidence            34444555566666666665554322    22445666666666665443221   111211      134556666666


Q ss_pred             cccccccc----cCCccCcCCCCCCEEecCCCcccccccccccc----c---------CCCCeEEcCCCcCC
Q 040195          220 IAENNFVG----SIPDSLSNASNLELLELAGNQFEGKVSIDFSS----L---------KNLAVLNLERNNLG  274 (472)
Q Consensus       220 l~~~~l~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~----l---------~~L~~L~l~~~~~~  274 (472)
                      +++|.+..    .++..+..+++|+.|++++|.++......+..    +         ++|++|++++|.++
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence            66666554    23344556666777777766665433333222    2         56666666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=1.2e-22  Score=194.78  Aligned_cols=99  Identities=17%  Similarity=0.131  Sum_probs=62.8

Q ss_pred             ccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccccc---ccCCcc-------CcCCCCCCEE
Q 040195          173 KIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFV---GSIPDS-------LSNASNLELL  242 (472)
Q Consensus       173 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~---~~~~~~-------l~~~~~L~~L  242 (472)
                      .++..+..+++|++|++++|.+.....   ......+..+++|+.|++++|.+.   +.+|..       +..+++|++|
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~---~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L   99 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAA---RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV   99 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHH---HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHH---HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence            344566677888888888887644321   001123456788888888876433   223322       3567788888


Q ss_pred             ecCCCccccc----ccccccccCCCCeEEcCCCcCC
Q 040195          243 ELAGNQFEGK----VSIDFSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       243 ~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~  274 (472)
                      ++++|.++..    .+..+..+++|++|++++|.++
T Consensus       100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A          100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            8888877652    3445667778888888777764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.5e-20  Score=168.78  Aligned_cols=165  Identities=22%  Similarity=0.243  Sum_probs=117.0

Q ss_pred             CcccccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCC
Q 040195           24 NLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIP  103 (472)
Q Consensus        24 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~  103 (472)
                      .|+.|.|..|.   ...++++++++.+...... +.  ++++.|++++|.+....+..+.++++|++|++++|.+.+..+
T Consensus         3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCN---EGKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEE---GGGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcC---CCCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            58889999994   3456788988888665433 22  578888888888887777778888888888888888876666


Q ss_pred             cccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCC
Q 040195          104 TNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRN  183 (472)
Q Consensus       104 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  183 (472)
                      ..|..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            66778888888888888877555566677777777777777777555555566667777777766666444444555555


Q ss_pred             ccEEEccCCcc
Q 040195          184 LVYLNVNENQF  194 (472)
Q Consensus       184 L~~L~l~~~~l  194 (472)
                      |++|++++|.+
T Consensus       157 L~~L~L~~N~l  167 (251)
T 3m19_A          157 LQTLSLSTNQL  167 (251)
T ss_dssp             CCEEECCSSCC
T ss_pred             CCEEECCCCcC
Confidence            55555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.5e-22  Score=190.44  Aligned_cols=235  Identities=16%  Similarity=0.221  Sum_probs=129.1

Q ss_pred             cccccceeeCCCCCceEEEECCCCccCcccCccccCC--CCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCC-
Q 040195           25 LCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNL--SFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGT-  101 (472)
Q Consensus        25 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-  101 (472)
                      |..|..+.+.+  ..+++++++++.+..   ..+..+  ++++.|+++++.+.+..+. +..+++|++|++++|.+.+. 
T Consensus        36 c~~W~~~~~~~--~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~  109 (336)
T 2ast_B           36 CKRWYRLASDE--SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST  109 (336)
T ss_dssp             CHHHHHHHTCS--TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred             HHHHHHHhcCc--hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence            44555555432  345667777766542   234444  6667777776666544333 34566677777766665533 


Q ss_pred             CCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEcccc-CCCCC-CCccccCCCCccEEEecCC-ccccc-cccc
Q 040195          102 IPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYN-NLTGQ-LPDFVGNLSALQVIYIRGN-SLGGK-IPTT  177 (472)
Q Consensus       102 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~i~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~  177 (472)
                      .+..+..+++|++|++++|.++...+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  189 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  189 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence            4455566666666666666665555555666666666666666 44431 3444555666666666666 55532 3344


Q ss_pred             cccCC-CccEEEccCCc--cccccccccccChhhhcCCCCccEEEccccc-ccccCCccCcCCCCCCEEecCCC-ccccc
Q 040195          178 LGLLR-NLVYLNVNENQ--FWYVSSFSGSLPFDILVNLPNLKKLCIAENN-FVGSIPDSLSNASNLELLELAGN-QFEGK  252 (472)
Q Consensus       178 l~~~~-~L~~L~l~~~~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~~-~~~~~  252 (472)
                      +..++ +|++|++++|.  +.+     +.+ ...+..+++|++|++++|. +++..+..+..+++|+.|++++| .+.+.
T Consensus       190 ~~~l~~~L~~L~l~~~~~~~~~-----~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~  263 (336)
T 2ast_B          190 VAHVSETITQLNLSGYRKNLQK-----SDL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  263 (336)
T ss_dssp             HHHSCTTCCEEECCSCGGGSCH-----HHH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             HHhcccCCCEEEeCCCcccCCH-----HHH-HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence            55566 66666666663  211     001 1223345666666666665 44444445555566666666665 23322


Q ss_pred             ccccccccCCCCeEEcCCC
Q 040195          253 VSIDFSSLKNLAVLNLERN  271 (472)
Q Consensus       253 ~~~~l~~l~~L~~L~l~~~  271 (472)
                      ....+..+++|++|++++|
T Consensus       264 ~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          264 TLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGGGCTTCCEEECTTS
T ss_pred             HHHHHhcCCCCCEEeccCc
Confidence            2334555555666655555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=1.1e-20  Score=168.44  Aligned_cols=198  Identities=17%  Similarity=0.198  Sum_probs=161.9

Q ss_pred             CCccEEeccCCcCccCcchhhhcCCCCCEEEccCcc-cCCCCCcccCCCCCCcEEEccc-CcCcccCCccccCCCCCcEE
Q 040195           62 SFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS-FSGTIPTNLSRCSELTHLRVAN-NKLEGQIPKEIGSLLKLQTL  139 (472)
Q Consensus        62 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L  139 (472)
                      ++|++|++++|.+....+..|.++++|++|++++|. +....+..|..+++|++|++++ |.++...+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            378999999999887777788899999999999996 7756666788999999999998 88886666778899999999


Q ss_pred             EccccCCCCCCCccccCCCCcc---EEEecCC-ccccccccccccCCCcc-EEEccCCccccccccccccChhhhcCCCC
Q 040195          140 ALYYNNLTGQLPDFVGNLSALQ---VIYIRGN-SLGGKIPTTLGLLRNLV-YLNVNENQFWYVSSFSGSLPFDILVNLPN  214 (472)
Q Consensus       140 ~l~~~~i~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~~~~~  214 (472)
                      ++++|.+.+ +|. +..+++|+   +|++++| .++...+..|..+++|+ +|++++|.+.       .++...+.. ++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-------~i~~~~~~~-~~  180 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-------SVQGYAFNG-TK  180 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-------EECTTTTTT-CE
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-------ccCHhhcCC-CC
Confidence            999999884 565 77888887   9999999 88866666788899999 9999999874       344445545 78


Q ss_pred             ccEEEccccc-ccccCCccCcCC-CCCCEEecCCCcccccccccccccCCCCeEEcCCCc
Q 040195          215 LKKLCIAENN-FVGSIPDSLSNA-SNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNN  272 (472)
Q Consensus       215 L~~L~l~~~~-l~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  272 (472)
                      |++|++++|. ++...+..|..+ ++|+.|++++|.++.....   .+++|+.|+++++.
T Consensus       181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            9999999995 887777788888 9999999999999754333   67889999988753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=1.4e-20  Score=174.65  Aligned_cols=207  Identities=17%  Similarity=0.156  Sum_probs=142.4

Q ss_pred             CCCccEEeccCCcCccCcch---hhhcCCCCCEEEccCcccCCCCCccc--CCCCCCcEEEcccCcCcccCC----cccc
Q 040195           61 LSFLRYINLSDNGFHGEIPQ---EIGNLYRLEKLELSNNSFSGTIPTNL--SRCSELTHLRVANNKLEGQIP----KEIG  131 (472)
Q Consensus        61 ~~~L~~L~L~~~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~l~  131 (472)
                      ...++.+.+.++.+......   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.++...+    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            34577888887766532111   12345779999999999887777777  888999999999998875433    3345


Q ss_pred             CCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccc--c--ccccccCCCccEEEccCCccccccccccccChh
Q 040195          132 SLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGK--I--PTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD  207 (472)
Q Consensus       132 ~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~--~--~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  207 (472)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .  ...+..+++|++|++++|.+..++.    .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~  218 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG----VCAA  218 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH----HHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH----HHHH
Confidence            688999999999998877778888889999999999886532  1  2234677888888888888743321    1112


Q ss_pred             hhcCCCCccEEEcccccccccCCccCcCC---CCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195          208 ILVNLPNLKKLCIAENNFVGSIPDSLSNA---SNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       208 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  274 (472)
                      .+..+++|++|++++|.+.+..|..+..+   ++|++|++++|.++ ..+..+.  ++|+.|++++|+++
T Consensus       219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred             HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence            34566788888888888776655555554   57777777777776 3333332  56666666666553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=2.6e-20  Score=166.05  Aligned_cols=198  Identities=15%  Similarity=0.149  Sum_probs=168.6

Q ss_pred             CCceEEEECCCCccCcccCccccCCCCccEEeccCCc-CccCcchhhhcCCCCCEEEccC-cccCCCCCcccCCCCCCcE
Q 040195           37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNG-FHGEIPQEIGNLYRLEKLELSN-NSFSGTIPTNLSRCSELTH  114 (472)
Q Consensus        37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~  114 (472)
                      .+++++|++++|.+.......+..+++|++|++++|. +....+.+|.++++|++|++++ |.+....+..|..+++|++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            3589999999999999888899999999999999997 8867777899999999999998 8888666778999999999


Q ss_pred             EEcccCcCcccCCccccCCCCCc---EEEcccc-CCCCCCCccccCCCCcc-EEEecCCccccccccccccCCCccEEEc
Q 040195          115 LRVANNKLEGQIPKEIGSLLKLQ---TLALYYN-NLTGQLPDFVGNLSALQ-VIYIRGNSLGGKIPTTLGLLRNLVYLNV  189 (472)
Q Consensus       115 L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~i~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l  189 (472)
                      |++++|.++. ++. +..+++|+   +|++++| .+....+..+..+++|+ +|++++|.++......+.. ++|++|++
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence            9999999984 555 88888888   9999999 89866667789999999 9999999998433344444 89999999


Q ss_pred             cCCc-cccccccccccChhhhcCC-CCccEEEcccccccccCCccCcCCCCCCEEecCCC
Q 040195          190 NENQ-FWYVSSFSGSLPFDILVNL-PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGN  247 (472)
Q Consensus       190 ~~~~-l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~  247 (472)
                      ++|+ +       ..++...+..+ ++|+.|++++|.++...+.   .+++|+.|.++++
T Consensus       187 ~~n~~l-------~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          187 NKNKYL-------TVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TTCTTC-------CEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCCCc-------ccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            9995 7       44555667788 9999999999999864433   5788999998875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=5.5e-21  Score=177.32  Aligned_cols=152  Identities=23%  Similarity=0.242  Sum_probs=116.4

Q ss_pred             cccEEEeecccccCcccccccCccCcceEeccccccccC--c--chhhcCCCCCcEEEccCCcCcccccc----chhccc
Q 040195          305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGT--I--PDVIGELKNLQILSLFGNFLHGSIPS----SLGNLT  376 (472)
Q Consensus       305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~--~--~~~~~~~~~L~~L~L~~n~l~~~~~~----~l~~~~  376 (472)
                      +++.|++++|.+....+..+..+++|++|++++|.+.+.  .  +..++.+++|++|++++|.++. .+.    .+..++
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~  224 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGV  224 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTC
T ss_pred             CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCC
Confidence            555666666666666666777888889999988886542  1  2234678899999999998862 222    246778


Q ss_pred             ccCeeeccCCcccccCCcCccCC---CCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCce
Q 040195          377 KLANLELSSNSLQGNIPLSVGNC---QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLIL  453 (472)
Q Consensus       377 ~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~  453 (472)
                      +|++|++++|.+++..|..+..+   ++|+.|++++|.++ .+|..+.  ++++ .|++++|++++. |. +..+++|+.
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~-~L~Ls~N~l~~~-~~-~~~l~~L~~  298 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLR-VLDLSSNRLNRA-PQ-PDELPEVDN  298 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCS-CEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCC-EEECCCCcCCCC-ch-hhhCCCccE
Confidence            99999999999987767666666   69999999999998 6777664  7888 999999999864 33 678899999


Q ss_pred             EeccCCeecc
Q 040195          454 LDISGNQFSG  463 (472)
Q Consensus       454 L~L~~n~~~~  463 (472)
                      |+|++|++++
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            9999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=4.1e-20  Score=165.95  Aligned_cols=160  Identities=23%  Similarity=0.218  Sum_probs=140.4

Q ss_pred             ccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195          304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL  383 (472)
Q Consensus       304 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  383 (472)
                      +.++.|+++++.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            47899999999999888888999999999999999999888888889999999999999998777778889999999999


Q ss_pred             cCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195          384 SSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG  463 (472)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~  463 (472)
                      ++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+ .|++++|++++..+..|..+++|+.|+|++|+++.
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ-TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC-EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            99999966666678899999999999999854445788889999 99999999998777789999999999999999875


Q ss_pred             c
Q 040195          464 V  464 (472)
Q Consensus       464 ~  464 (472)
                      .
T Consensus       194 ~  194 (251)
T 3m19_A          194 S  194 (251)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=5e-20  Score=170.44  Aligned_cols=194  Identities=24%  Similarity=0.344  Sum_probs=117.3

Q ss_pred             ccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccccccc
Q 040195          179 GLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFS  258 (472)
Q Consensus       179 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~  258 (472)
                      ..+++|++|++++|.+..+.         .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++.  ..+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~---------~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~  104 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIE---------GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIA  104 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCT---------TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGT
T ss_pred             HHcCCcCEEEeeCCCccCch---------hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhc
Confidence            34556666666666553221         13345555555555555543222  45555555555555555432  2344


Q ss_pred             ccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEecccc
Q 040195          259 SLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSN  338 (472)
Q Consensus       259 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  338 (472)
                      .+++|++|++++|.                                           ++...  .+..+++|++|++++|
T Consensus       105 ~l~~L~~L~l~~n~-------------------------------------------l~~~~--~l~~l~~L~~L~l~~n  139 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQ-------------------------------------------ITDVT--PLAGLSNLQVLYLDLN  139 (308)
T ss_dssp             TCTTCCEEECTTSC-------------------------------------------CCCCG--GGTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCC-------------------------------------------CCCch--hhcCCCCCCEEECCCC
Confidence            44444444444443                                           33321  2566777888888888


Q ss_pred             ccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCCh
Q 040195          339 QLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQ  418 (472)
Q Consensus       339 ~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~  418 (472)
                      .+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|++.+ ++ 
T Consensus       140 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~-  211 (308)
T 1h6u_A          140 QITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VS-  211 (308)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CG-
T ss_pred             ccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc-cc-
Confidence            7775433  6677888888888887774332  6777788888888887774322  6677778888888887773 33 


Q ss_pred             hhhhhcccceEEEcCCCcccc
Q 040195          419 QLLSITTLSLYLDLSHNLLNG  439 (472)
Q Consensus       419 ~l~~~~~l~~~L~ls~n~l~~  439 (472)
                      .+..+++++ .|++++|++++
T Consensus       212 ~l~~l~~L~-~L~l~~N~i~~  231 (308)
T 1h6u_A          212 PLANTSNLF-IVTLTNQTITN  231 (308)
T ss_dssp             GGTTCTTCC-EEEEEEEEEEC
T ss_pred             cccCCCCCC-EEEccCCeeec
Confidence            367777777 78888777764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.2e-19  Score=167.96  Aligned_cols=194  Identities=26%  Similarity=0.357  Sum_probs=133.2

Q ss_pred             ccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCc
Q 040195           58 VGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQ  137 (472)
Q Consensus        58 l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  137 (472)
                      ...+++|++|+++++.+.. .+ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.++. . ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence            3456677777777777663 23 467777777777777777643 33 6777777777777777763 2 3577777777


Q ss_pred             EEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccE
Q 040195          138 TLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK  217 (472)
Q Consensus       138 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~  217 (472)
                      +|++++|.+.+ .+ .+..+++|++|++++|.+++..  .+..+++|++|++++|.+.++.       .  +..+++|+.
T Consensus       111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~-------~--l~~l~~L~~  177 (308)
T 1h6u_A          111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT-------P--LANLSKLTT  177 (308)
T ss_dssp             EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG-------G--GTTCTTCCE
T ss_pred             EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCCh-------h--hcCCCCCCE
Confidence            77777777764 33 2677777777777777776432  2667777888888777764332       1  456777888


Q ss_pred             EEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195          218 LCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       218 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  274 (472)
                      |++++|.+++..+  +..+++|+.|++++|.+++..  .+..+++|+.|++++|+++
T Consensus       178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             EECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            8888877765432  677788888888888776544  3677788888888888765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=5.5e-19  Score=153.80  Aligned_cols=161  Identities=21%  Similarity=0.187  Sum_probs=141.8

Q ss_pred             ccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195          304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL  383 (472)
Q Consensus       304 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  383 (472)
                      ++++.|+++++.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            48999999999999888778899999999999999999777777889999999999999999776777889999999999


Q ss_pred             cCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195          384 SSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG  463 (472)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~  463 (472)
                      ++|.+++..+..+..+++|+.|++++|.+++..+..+..+++++ .|++++|.+.+       .+++|+.|+++.|.+++
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~-~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ-YIWLHDNPWDC-------TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC-EEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc-EEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence            99999966666788999999999999999854455578899999 99999998763       45689999999999999


Q ss_pred             ccCCccccC
Q 040195          464 VIPVTLSIC  472 (472)
Q Consensus       464 ~~p~~~~~~  472 (472)
                      .+|..++++
T Consensus       180 ~ip~~~~~l  188 (208)
T 2o6s_A          180 VVRNSAGSV  188 (208)
T ss_dssp             TBBCTTSSB
T ss_pred             eeeccCccc
Confidence            999887753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=2.6e-18  Score=149.51  Aligned_cols=164  Identities=20%  Similarity=0.251  Sum_probs=133.7

Q ss_pred             CCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEE
Q 040195           61 LSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA  140 (472)
Q Consensus        61 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  140 (472)
                      .++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            45889999999988877777788899999999999988866666678899999999999998866556678889999999


Q ss_pred             ccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEc
Q 040195          141 LYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCI  220 (472)
Q Consensus       141 l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  220 (472)
                      +++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+              ...+++|+.|++
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------------~~~~~~l~~L~~  172 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------------DCTCPGIRYLSE  172 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------------CCCTTTTHHHHH
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------------ecCCCCHHHHHH
Confidence            999998866666678889999999999988866556678889999999998864              124678888888


Q ss_pred             ccccccccCCccCcCCCC
Q 040195          221 AENNFVGSIPDSLSNASN  238 (472)
Q Consensus       221 ~~~~l~~~~~~~l~~~~~  238 (472)
                      ..+.+++.+|..++.++.
T Consensus       173 ~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          173 WINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             HHHHCTTTBBCTTSSBCT
T ss_pred             HHHhCCceeeccCccccC
Confidence            888888888777766554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=1.1e-17  Score=157.82  Aligned_cols=241  Identities=18%  Similarity=0.184  Sum_probs=138.6

Q ss_pred             EEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccE
Q 040195          138 TLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK  217 (472)
Q Consensus       138 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~  217 (472)
                      +++.++++++ .+|..+  .+++++|++++|+++...+..|..+++|++|++++|.+.      +.++...+..++++.+
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~------~~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL------EVIEADVFSNLPKLHE   83 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC------CEECTTSBCSCTTCCE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC------CccChhHhhcchhhhh
Confidence            3444444444 333332  134555555555555333334555555555555555431      2233334445555444


Q ss_pred             -EEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCC-cCCCCCCCCcchhhhhcccCCCcC
Q 040195          218 -LCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERN-NLGIGTANDLGFVTFLTNCSSLKL  295 (472)
Q Consensus       218 -L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~  295 (472)
                       +.+.+|.++...+..|..+++|++|++++|.+.......+....++..+++.++ .+......                
T Consensus        84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~----------------  147 (350)
T 4ay9_X           84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN----------------  147 (350)
T ss_dssp             EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT----------------
T ss_pred             hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc----------------
Confidence             334445565555566666677777777766666544444445555666666442 33211100                


Q ss_pred             CchhhhccccccEEEeecccccCcccccccCccCcceEeccc-cccccCcchhhcCCCCCcEEEccCCcCccccccchhc
Q 040195          296 PHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQS-NQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGN  374 (472)
Q Consensus       296 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  374 (472)
                        .+......++.|++++|.++.+....+ ..++|+++++++ |.+....+.+|..+++|++|++++|+++..-+..   
T Consensus       148 --~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---  221 (350)
T 4ay9_X          148 --SFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---  221 (350)
T ss_dssp             --SSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred             --chhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence              111122356778888888776655444 456789999975 5666555567888999999999999988443333   


Q ss_pred             ccccCeeeccCCcccccCCcCccCCCCCceEeecCC
Q 040195          375 LTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHI  410 (472)
Q Consensus       375 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~  410 (472)
                      +.+|+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus       222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            4556666665554444566 4778889999998764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=4.7e-18  Score=160.24  Aligned_cols=221  Identities=17%  Similarity=0.114  Sum_probs=113.0

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccC-cchhhhcCCCCCE-EEccCcccCCCCCcccCCCCCCcEE
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGE-IPQEIGNLYRLEK-LELSNNSFSGTIPTNLSRCSELTHL  115 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~-L~L~~~~~~~~~~~~l~~l~~L~~L  115 (472)
                      +++++|++++|.++.+....|.++++|++|+|++|.+.+. .+++|.+++++++ +.+.+|.+....+..|..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            4556666666666655555566666666666666655332 2344556665554 3334455554445556666666666


Q ss_pred             EcccCcCcccCCccccCCCCCcEEEccc-cCCCCCCCccccCC-CCccEEEecCCccccccccccccCCCccEEEccC-C
Q 040195          116 RVANNKLEGQIPKEIGSLLKLQTLALYY-NNLTGQLPDFVGNL-SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNE-N  192 (472)
Q Consensus       116 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~i~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~  192 (472)
                      ++++|.+....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.++. ++.......+|+++++.+ |
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n  188 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNN  188 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCC
Confidence            6666666543333444455555565543 33443333334443 245566666666653 233223344566666653 3


Q ss_pred             ccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCC
Q 040195          193 QFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLER  270 (472)
Q Consensus       193 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  270 (472)
                      .+       +.++.+.+..+++|+.|++++|.++...+..|   .+|+.|.+.++.--...+ .+..+++|+.+++.+
T Consensus       189 ~l-------~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          189 NL-------EELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             TC-------CCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred             cc-------cCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence            33       44444555566666666666666654333333   334444433332111222 345556666666543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=2.3e-17  Score=145.52  Aligned_cols=165  Identities=21%  Similarity=0.216  Sum_probs=124.3

Q ss_pred             CCCCCCCCCCcccccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEcc
Q 040195           15 VTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELS   94 (472)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~   94 (472)
                      ....|..+...|.|.++.|..            +.+..... .+  .++|++|++++|.+....+..+..+++|++|+++
T Consensus         8 ~~~~~~~~~~~Cs~~~v~c~~------------~~l~~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   72 (229)
T 3e6j_A            8 HHSAACPSQCSCSGTTVDCRS------------KRHASVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLG   72 (229)
T ss_dssp             ---CCCCTTCEEETTEEECTT------------SCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             hhhccCCCCCEEeCCEeEccC------------CCcCccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECC
Confidence            334555677999998888742            33333322 11  2778888888888887777788888888888888


Q ss_pred             CcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccccc
Q 040195           95 NNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKI  174 (472)
Q Consensus        95 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~  174 (472)
                      +|.+....+..|..+++|++|++++|.++...+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++...
T Consensus        73 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A           73 SNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred             CCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC
Confidence            88887555566788888888888888888665666788888888888888887 67777788888888888888887655


Q ss_pred             ccccccCCCccEEEccCCccc
Q 040195          175 PTTLGLLRNLVYLNVNENQFW  195 (472)
Q Consensus       175 ~~~l~~~~~L~~L~l~~~~l~  195 (472)
                      +..+..+++|+.|++++|++.
T Consensus       152 ~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          152 HGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTTTTTCTTCCEEECTTSCBC
T ss_pred             HHHHhCCCCCCEEEeeCCCcc
Confidence            566788888888888888764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=7.9e-18  Score=167.01  Aligned_cols=188  Identities=24%  Similarity=0.358  Sum_probs=139.7

Q ss_pred             CCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCC
Q 040195          213 PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSS  292 (472)
Q Consensus       213 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  292 (472)
                      .+++.|++++|.+++ +|..+  .++|++|++++|.++. .+   ..+++|++|++++|.++.                 
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-----------------  114 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-----------------  114 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-----------------
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-----------------
Confidence            389999999999886 55544  3789999999999883 33   457899999999998762                 


Q ss_pred             CcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccch
Q 040195          293 LKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSL  372 (472)
Q Consensus       293 l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  372 (472)
                        +|. +.   .+|+.|++++|.++.+..    .+++|+.|++++|.+.+ +|.   .+++|++|++++|.+++ +|. +
T Consensus       115 --ip~-l~---~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l  178 (571)
T 3cvr_A          115 --LPE-LP---ASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L  178 (571)
T ss_dssp             --CCC-CC---TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C
T ss_pred             --cch-hh---cCCCEEECCCCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h
Confidence              222 11   178888888888887433    56888888888888875 443   46788888888888875 555 5


Q ss_pred             hcccccCeeeccCCcccccCCcCccCCCCC-------ceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccc
Q 040195          373 GNLTKLANLELSSNSLQGNIPLSVGNCQNL-------IGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV  445 (472)
Q Consensus       373 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l  445 (472)
                      .  ++|+.|++++|.++ .+|. +..  +|       +.|++++|.++ .+|..+..+++++ .|++++|++++..|..+
T Consensus       179 ~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~-~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          179 P--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTC-TIILEDNPLSSRIRESL  250 (571)
T ss_dssp             C--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTE-EEECCSSSCCHHHHHHH
T ss_pred             h--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCC-EEEeeCCcCCCcCHHHH
Confidence            4  78888888888888 5655 433  66       88888888888 6787777788888 88888888887777666


Q ss_pred             cCC
Q 040195          446 GNL  448 (472)
Q Consensus       446 ~~~  448 (472)
                      ..+
T Consensus       251 ~~l  253 (571)
T 3cvr_A          251 SQQ  253 (571)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.4e-17  Score=145.92  Aligned_cols=152  Identities=15%  Similarity=0.154  Sum_probs=116.8

Q ss_pred             cEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCC
Q 040195          307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSN  386 (472)
Q Consensus       307 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~  386 (472)
                      +.++++++.++.+.. .+.  ++|+.|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~-~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT-NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCS-SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCC-ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            566777777665533 222  67888888888888666667778888888888888888777778888888888888888


Q ss_pred             cccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeec
Q 040195          387 SLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS  462 (472)
Q Consensus       387 ~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~  462 (472)
                      .++...+..+..+++|++|++++|.+.+..+..+..+++|+ .|++++|++++..+..|..+++|+.|+|++|++.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN-LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC-EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            88854445567788888888888888865567777888888 8888888888776777888888888888888774

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=2.7e-17  Score=145.08  Aligned_cols=155  Identities=24%  Similarity=0.177  Sum_probs=128.5

Q ss_pred             cccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195          305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS  384 (472)
Q Consensus       305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  384 (472)
                      ..+.++++++.++.+... +  .++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|+++
T Consensus        20 s~~~v~c~~~~l~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcCccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            466788887777765432 2  3789999999999988778888889999999999999876666677889999999999


Q ss_pred             CCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccc
Q 040195          385 SNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV  464 (472)
Q Consensus       385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~  464 (472)
                      +|.++...+..+..+++|+.|++++|.+. .+|..+..+++|+ .|++++|++++..+..|..+++|+.|++++|++...
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLT-HLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCS-EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCC-EEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            99988666666788999999999999998 7888888889998 999999999877667788899999999999988643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2e-17  Score=151.51  Aligned_cols=171  Identities=25%  Similarity=0.348  Sum_probs=95.0

Q ss_pred             cCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcE
Q 040195           59 GNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQT  138 (472)
Q Consensus        59 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  138 (472)
                      ..+++|++|++++|.+...  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.++. . ..+..+++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence            3455666666666655533  235556666666666666653322  5566666666666666552 2 23556666666


Q ss_pred             EEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEE
Q 040195          139 LALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL  218 (472)
Q Consensus       139 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L  218 (472)
                      |++++|.+.+.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.++.       .  +..+++|+.|
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~-------~--l~~l~~L~~L  183 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-------P--LAGLTKLQNL  183 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-------G--GTTCTTCCEE
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch-------h--hcCCCccCEE
Confidence            66666666532  3455566666666666665532  44555666666666666553321       1  3355556666


Q ss_pred             EcccccccccCCccCcCCCCCCEEecCCCccc
Q 040195          219 CIAENNFVGSIPDSLSNASNLELLELAGNQFE  250 (472)
Q Consensus       219 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~  250 (472)
                      ++++|.+++. + .+..+++|+.|++++|.+.
T Consensus       184 ~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          184 YLSKNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             ECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             ECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence            6666655532 2 2555566666666665554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=2.3e-17  Score=144.57  Aligned_cols=154  Identities=14%  Similarity=0.136  Sum_probs=124.7

Q ss_pred             ccEEEeecccccCcccccccCccCcceEeccccccccCcc-hhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195          306 MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP-DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS  384 (472)
Q Consensus       306 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  384 (472)
                      .+.++++++.++.+.. .+  .+.+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        13 ~~~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            4578888888776533 23  2457889999998886644 457888899999999998887777788888999999999


Q ss_pred             CCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195          385 SNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG  463 (472)
Q Consensus       385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~  463 (472)
                      +|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+ .|++++|++++..|..|..+++|+.|+|++|++..
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR-LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS-EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC-EEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            9998866666788889999999999998866677888888888 89999999988778888888999999999998863

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=2.4e-17  Score=163.56  Aligned_cols=216  Identities=22%  Similarity=0.296  Sum_probs=164.2

Q ss_pred             CCCCCCCCCCcc-----cccce-eeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCC
Q 040195           15 VTSSWNNTINLC-----QWMGV-TCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRL   88 (472)
Q Consensus        15 ~~~~~~~~~~~~-----~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L   88 (472)
                      .+..|......|     .|.++ .|..  .+++.|+++++.+.+. +..+  +++|++|++++|.+. .+|   ..+++|
T Consensus        32 ~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L  102 (571)
T 3cvr_A           32 AWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALI-SLP---ELPASL  102 (571)
T ss_dssp             HHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred             HHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCc-ccc---cccCCC
Confidence            345687677777     67777 5632  5899999999999874 3333  378999999999988 455   457899


Q ss_pred             CEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCC
Q 040195           89 EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGN  168 (472)
Q Consensus        89 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~  168 (472)
                      ++|++++|.+.+ +|. +..  +|++|++++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|
T Consensus       103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNN  170 (571)
T ss_dssp             CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred             CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCC
Confidence            999999999985 666 655  99999999999985 555   67999999999999985 554   5789999999999


Q ss_pred             ccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCc
Q 040195          169 SLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ  248 (472)
Q Consensus       169 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~  248 (472)
                      .+++ ++. +.  ++|++|++++|.+..++.    ++.......+.|+.|++++|.++. +|..+..+++|+.|++++|.
T Consensus       171 ~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~----~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          171 QLTF-LPE-LP--ESLEALDVSTNLLESLPA----VPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             CCSC-CCC-CC--TTCCEEECCSSCCSSCCC----CC--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSS
T ss_pred             CCCC-cch-hh--CCCCEEECcCCCCCchhh----HHHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCc
Confidence            9985 555 55  899999999999865432    111111222334999999999984 66667779999999999999


Q ss_pred             cccccccccccc
Q 040195          249 FEGKVSIDFSSL  260 (472)
Q Consensus       249 ~~~~~~~~l~~l  260 (472)
                      +++..+..+..+
T Consensus       242 l~~~~p~~l~~l  253 (571)
T 3cvr_A          242 LSSRIRESLSQQ  253 (571)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCCcCHHHHHHh
Confidence            987766666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=2e-17  Score=156.55  Aligned_cols=157  Identities=22%  Similarity=0.172  Sum_probs=139.4

Q ss_pred             ccccEEEeecccccCccccccc-CccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeee
Q 040195          304 STMTHFYIGGNQILGIIHFGIR-NLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLE  382 (472)
Q Consensus       304 ~~l~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~  382 (472)
                      +.++.|++++|.++......+. .+++|+.|+|++|.+.+..+..|..+++|++|+|++|.+....+..|..+++|++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            4689999999999988888887 899999999999999988778899999999999999999977777899999999999


Q ss_pred             ccCCcccccCCcCccCCCCCceEeecCCcccccCChhh----hhhcccceEEEcCCCcccccccccccCCCC--CceEec
Q 040195          383 LSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQL----LSITTLSLYLDLSHNLLNGSLLLQVGNLKN--LILLDI  456 (472)
Q Consensus       383 l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l----~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~--L~~L~L  456 (472)
                      +++|+++...+..+..+++|+.|++++|.++ .+|..+    ..+++|+ .|+|++|+++...+..+..++.  ++.|+|
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~-~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l  196 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLM-LLDLSSNKLKKLPLTDLQKLPAWVKNGLYL  196 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCC-EEECCSSCCCCCCHHHHHHSCHHHHTTEEC
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCC-EEECCCCCCCccCHHHhhhccHhhcceEEe
Confidence            9999999777889999999999999999999 466554    5688999 9999999999777778888887  489999


Q ss_pred             cCCeec
Q 040195          457 SGNQFS  462 (472)
Q Consensus       457 ~~n~~~  462 (472)
                      ++|++.
T Consensus       197 ~~N~~~  202 (361)
T 2xot_A          197 HNNPLE  202 (361)
T ss_dssp             CSSCEE
T ss_pred             cCCCcc
Confidence            999985

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=4.1e-17  Score=149.47  Aligned_cols=171  Identities=22%  Similarity=0.289  Sum_probs=147.5

Q ss_pred             CCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEE
Q 040195           36 RHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHL  115 (472)
Q Consensus        36 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L  115 (472)
                      ..++++.|+++++.+...  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ . ..+..+++|++|
T Consensus        44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEE
T ss_pred             hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEE
Confidence            347899999999998776  358899999999999999986544  8999999999999999874 3 348999999999


Q ss_pred             EcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195          116 RVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW  195 (472)
Q Consensus       116 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  195 (472)
                      ++++|.+...  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+.
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            9999999843  5688999999999999999854  678899999999999999985443  889999999999999985


Q ss_pred             cccccccccChhhhcCCCCccEEEcccccccc
Q 040195          196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVG  227 (472)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  227 (472)
                      ++.         .+..+++|+.|++++|.+..
T Consensus       192 ~l~---------~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          192 DLR---------ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             BCG---------GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCh---------hhccCCCCCEEECcCCcccC
Confidence            542         25688999999999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=2.5e-17  Score=141.89  Aligned_cols=151  Identities=18%  Similarity=0.245  Sum_probs=130.7

Q ss_pred             ccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195          304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL  383 (472)
Q Consensus       304 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  383 (472)
                      ++++.++++++.+....  .+..+++|++|++++|.+...  ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            48999999999998654  588899999999999977633  46888999999999999999878888999999999999


Q ss_pred             cCCcccccCCcCccCCCCCceEeecCCc-ccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeec
Q 040195          384 SSNSLQGNIPLSVGNCQNLIGFDASHIT-LTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS  462 (472)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~-~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~  462 (472)
                      ++|.+++..+..+..+++|+.|++++|. +. .++ .+..+++|+ .|++++|++++. + .+..+++|+.|++++|++.
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~-~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELK-SLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCC-EEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCC-EEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence            9999997778888999999999999998 65 555 688999999 999999999864 3 7899999999999999986


Q ss_pred             c
Q 040195          463 G  463 (472)
Q Consensus       463 ~  463 (472)
                      +
T Consensus       195 ~  195 (197)
T 4ezg_A          195 G  195 (197)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=8.5e-17  Score=161.40  Aligned_cols=172  Identities=24%  Similarity=0.354  Sum_probs=92.9

Q ss_pred             cCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcE
Q 040195           59 GNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQT  138 (472)
Q Consensus        59 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  138 (472)
                      ..+++|+.|+++++.+... + .+..+++|+.|+|++|.+.+..+  +..+++|+.|++++|.+.. . ..+..+++|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence            4455566666666555432 2 35556666666666665553322  5556666666666665552 2 24555566666


Q ss_pred             EEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEE
Q 040195          139 LALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL  218 (472)
Q Consensus       139 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L  218 (472)
                      |++++|.+.+ . ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+....       .  +..+++|+.|
T Consensus       114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~-------~--l~~l~~L~~L  180 (605)
T 1m9s_A          114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-------P--LAGLTKLQNL  180 (605)
T ss_dssp             EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG-------G--GTTCTTCCEE
T ss_pred             EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch-------h--hccCCCCCEE
Confidence            6666665553 2 3355556666666666655532  44555566666666666543221       1  3355566666


Q ss_pred             EcccccccccCCccCcCCCCCCEEecCCCcccc
Q 040195          219 CIAENNFVGSIPDSLSNASNLELLELAGNQFEG  251 (472)
Q Consensus       219 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~  251 (472)
                      +|++|.+.+.  ..+..+++|+.|++++|.+..
T Consensus       181 ~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          181 YLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             ECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             ECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            6666655542  235556666666666665543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=1.4e-16  Score=139.62  Aligned_cols=152  Identities=21%  Similarity=0.257  Sum_probs=120.7

Q ss_pred             EEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccC
Q 040195           41 TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN  120 (472)
Q Consensus        41 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~  120 (472)
                      +.++++++.+...... +  .+++++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            3577777777655432 2  267888999998888777778888888999999988888777888888888999999888


Q ss_pred             cCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195          121 KLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW  195 (472)
Q Consensus       121 ~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  195 (472)
                      .++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            888555556778888888888888888777778888888888888888888666667778888888888888753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=9.3e-17  Score=138.26  Aligned_cols=152  Identities=17%  Similarity=0.216  Sum_probs=83.2

Q ss_pred             hcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccE
Q 040195           83 GNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQV  162 (472)
Q Consensus        83 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~  162 (472)
                      +.+++|++|++++|.+. ..+ .+..+++|++|++++|.++  .+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            44556666666666665 333 4556666666666666544  2235556666666666666665445555666666666


Q ss_pred             EEecCCccccccccccccCCCccEEEccCCc-cccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCE
Q 040195          163 IYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ-FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLEL  241 (472)
Q Consensus       163 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~  241 (472)
                      |++++|.+++..+..+..+++|++|++++|. +.++       +  .+..+++|+.|++++|.+++. + .+..+++|+.
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-------~--~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~  185 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-------M--PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQ  185 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-------G--GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCE
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-------H--hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCE
Confidence            6666666655455556666666666666664 3222       1  133445555555555554432 1 3444555555


Q ss_pred             EecCCCcc
Q 040195          242 LELAGNQF  249 (472)
Q Consensus       242 L~l~~~~~  249 (472)
                      |++++|++
T Consensus       186 L~l~~N~i  193 (197)
T 4ezg_A          186 LYAFSQTI  193 (197)
T ss_dssp             EEECBC--
T ss_pred             EEeeCccc
Confidence            55555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=3.1e-16  Score=137.31  Aligned_cols=151  Identities=24%  Similarity=0.283  Sum_probs=127.8

Q ss_pred             EEECCCCccCcccCccccCCCCccEEeccCCcCccCcc-hhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccC
Q 040195           42 ELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIP-QEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN  120 (472)
Q Consensus        42 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~  120 (472)
                      .++++++.++.... .+  ...+++|++++|.+....+ ..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus        15 ~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            78888888876543 23  3456899999999886644 55889999999999999998777778999999999999999


Q ss_pred             cCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195          121 KLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW  195 (472)
Q Consensus       121 ~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  195 (472)
                      .++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            998777777889999999999999998777888889999999999999998777888888999999999998864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=3.1e-16  Score=157.34  Aligned_cols=174  Identities=21%  Similarity=0.276  Sum_probs=149.1

Q ss_pred             CCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcE
Q 040195           35 HRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTH  114 (472)
Q Consensus        35 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~  114 (472)
                      ...++++.|+++++.+....  .+..+++|+.|+|++|.+....+  +..+++|+.|+|++|.+.+ . ..+..+++|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence            34578999999999987653  58999999999999999986554  8999999999999999874 3 36899999999


Q ss_pred             EEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcc
Q 040195          115 LRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF  194 (472)
Q Consensus       115 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  194 (472)
                      |++++|.+..  ...+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+
T Consensus       114 L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          114 LSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             EECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEecCCCCCC--CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            9999999984  35688999999999999999854  678899999999999999986544  88999999999999998


Q ss_pred             ccccccccccChhhhcCCCCccEEEcccccccccC
Q 040195          195 WYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI  229 (472)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  229 (472)
                      ..+.         .+..+++|+.|++++|.+....
T Consensus       188 ~~l~---------~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          188 SDLR---------ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CBCG---------GGTTCTTCSEEECCSEEEECCC
T ss_pred             CCCh---------HHccCCCCCEEEccCCcCcCCc
Confidence            5542         3568899999999999987643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.69  E-value=1.4e-15  Score=145.76  Aligned_cols=125  Identities=12%  Similarity=0.064  Sum_probs=65.5

Q ss_pred             cccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCC
Q 040195          321 HFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQ  400 (472)
Q Consensus       321 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  400 (472)
                      ...|..+..++.+.+....+.   ..+|..+.+|+++.+.++ +......+|..+.+|+.+++.++ ++.....+|..|.
T Consensus       269 ~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~  343 (394)
T 4fs7_A          269 GSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT  343 (394)
T ss_dssp             SCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred             ccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC
Confidence            334555555555555443322   124555666666666544 33234445666666666666543 4433455666666


Q ss_pred             CCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceE
Q 040195          401 NLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILL  454 (472)
Q Consensus       401 ~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L  454 (472)
                      +|+.+.+..+ +..-....|.+|.+|+ .+++..+ +. ....+|.++++|+.+
T Consensus       344 ~L~~i~lp~~-l~~I~~~aF~~C~~L~-~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          344 SLSNINFPLS-LRKIGANAFQGCINLK-KVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TCCEECCCTT-CCEECTTTBTTCTTCC-EEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCEEEECcc-ccEehHHHhhCCCCCC-EEEECCC-CE-EhhheecCCCCCcEE
Confidence            6666666554 3322234566666666 6666543 11 122456666666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=1.7e-16  Score=150.13  Aligned_cols=175  Identities=22%  Similarity=0.275  Sum_probs=113.9

Q ss_pred             EEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhh-cCCCCCEEEccCcccCCCCCcccCCCCCCcEEEccc
Q 040195           41 TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIG-NLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVAN  119 (472)
Q Consensus        41 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~  119 (472)
                      +.++++++.+...... +  ...+++|+|++|.+....+..+. ++++|++|++++|.+....+..|..+++|++|++++
T Consensus        21 ~~l~c~~~~l~~iP~~-~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQS-L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSS-C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCcc-C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            3677777777654332 2  24577888888877766666666 778888888888877766666677777888888888


Q ss_pred             CcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccccccccc---ccCCCccEEEccCCcccc
Q 040195          120 NKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTL---GLLRNLVYLNVNENQFWY  196 (472)
Q Consensus       120 ~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~l~~  196 (472)
                      |.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|.++......+   ..+++|+.|++++|.+  
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l--  175 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL--  175 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC--
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC--
Confidence            77775555567777777777777777776556667777777777777777764333333   4566677777776665  


Q ss_pred             ccccccccChhhhcCCCC--ccEEEcccccc
Q 040195          197 VSSFSGSLPFDILVNLPN--LKKLCIAENNF  225 (472)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~--L~~L~l~~~~l  225 (472)
                           ..++...+..++.  ++.|++.+|.+
T Consensus       176 -----~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          176 -----KKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             -----CCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             -----CccCHHHhhhccHhhcceEEecCCCc
Confidence                 2333334444443  24555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=1.2e-16  Score=149.38  Aligned_cols=103  Identities=16%  Similarity=0.088  Sum_probs=66.7

Q ss_pred             CCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCc-eEeecCCcccccCChhhhhhcccceE
Q 040195          351 LKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLI-GFDASHITLTGALPQQLLSITTLSLY  429 (472)
Q Consensus       351 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~ls~~~~~~~~~~~l~~~~~l~~~  429 (472)
                      +++|+++++++|.++.....+|..+++|+++++.+| ++.....+|..|++|+ .+++.+ .++...+..|.+|++|+ .
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~-~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR-Y  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE-E
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC-E
Confidence            566666666666666555556666666666666665 5544455666677776 777766 44433346677777777 7


Q ss_pred             EEcCCCcccccccccccCCCCCceEec
Q 040195          430 LDLSHNLLNGSLLLQVGNLKNLILLDI  456 (472)
Q Consensus       430 L~ls~n~l~~~~~~~l~~~~~L~~L~L  456 (472)
                      +++++|.++.....+|.++++|+.|+.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccCccchhhhcCCcchhhhcc
Confidence            777777777666677777777777653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.67  E-value=2.5e-15  Score=143.98  Aligned_cols=334  Identities=10%  Similarity=0.035  Sum_probs=225.3

Q ss_pred             ccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCc
Q 040195           49 RIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPK  128 (472)
Q Consensus        49 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  128 (472)
                      .++.+...+|..+.+|+.+.|..+ ++.+...+|.+|.+|+.+++..+ +.......|.++..|+.+.+..+ +......
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~  134 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE  134 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence            355666778889999999999753 55566778999999999999765 54455677888888888877654 3334555


Q ss_pred             cccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhh
Q 040195          129 EIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDI  208 (472)
Q Consensus       129 ~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~  208 (472)
                      +|..+..++......  +......+|..+++|+.+.+..+. .......|..+.+|+.+.+..+ +       ..+....
T Consensus       135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~-------~~I~~~~  203 (394)
T 4fs7_A          135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-L-------KIIRDYC  203 (394)
T ss_dssp             TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-C-------CEECTTT
T ss_pred             eeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-c-------eEeCchh
Confidence            666665444333222  222445678888899998887653 2244567788888888888765 2       3445566


Q ss_pred             hcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhc
Q 040195          209 LVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLT  288 (472)
Q Consensus       209 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  288 (472)
                      +..+..|+.+.+..+...  +........+|+.+.+... ++......+..+..++.+.+..+...              
T Consensus       204 F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~--------------  266 (394)
T 4fs7_A          204 FAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR--------------  266 (394)
T ss_dssp             TTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE--------------
T ss_pred             hccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce--------------
Confidence            777888888877665432  2223345578888888654 33345566778888888888765432              


Q ss_pred             ccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCcccc
Q 040195          289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSI  368 (472)
Q Consensus       289 ~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~  368 (472)
                            +....+.....++.+......+   ....|..+.+|+.+.+.++ +......+|..+.+|+++++.++ ++...
T Consensus       267 ------i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~  335 (394)
T 4fs7_A          267 ------IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG  335 (394)
T ss_dssp             ------ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             ------eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEh
Confidence                  1111222233555555554433   3346778888999988765 55455678888999999999755 55456


Q ss_pred             ccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccc
Q 040195          369 PSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLS  427 (472)
Q Consensus       369 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~  427 (472)
                      ..+|..+.+|+.+++..+ ++.....+|..|++|+.+++..+- . .+...|.+|++|+
T Consensus       336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~  391 (394)
T 4fs7_A          336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFK  391 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEE
T ss_pred             HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCc
Confidence            678889999999999876 655567788999999999997652 2 2345677777776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=1.5e-16  Score=148.72  Aligned_cols=77  Identities=13%  Similarity=0.006  Sum_probs=52.0

Q ss_pred             cccEEEeecccccCcccccccCccCcc-eEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195          305 TMTHFYIGGNQILGIIHFGIRNLVNLI-ALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL  383 (472)
Q Consensus       305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  383 (472)
                      +|+.+++..+ +..+...+|..+++|+ .+++.+ .+....+.+|..+++|++++++++.+......+|..+++|+.++.
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            3444444433 3444555677777777 777777 566566677778888888888777777666667777888877753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=3.8e-16  Score=140.70  Aligned_cols=169  Identities=19%  Similarity=0.319  Sum_probs=97.0

Q ss_pred             CCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEE
Q 040195           61 LSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA  140 (472)
Q Consensus        61 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  140 (472)
                      +.++..++++.+.+.+..  .+..+++|++|++++|.+. ..+ .+..+++|++|++++|.++.. +. +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence            344555556665555322  3556666666666666655 233 455666666666666666532 22 66666666666


Q ss_pred             ccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEc
Q 040195          141 LYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCI  220 (472)
Q Consensus       141 l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  220 (472)
                      +++|.+.+ .+. +.. ++|++|++++|.+++.  ..+..+++|++|++++|.+.++.         .+..+++|+.|++
T Consensus        92 L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~---------~l~~l~~L~~L~L  157 (263)
T 1xeu_A           92 VNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV---------MLGFLSKLEVLDL  157 (263)
T ss_dssp             CCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG---------GGGGCTTCCEEEC
T ss_pred             CCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh---------HHccCCCCCEEEC
Confidence            66666653 222 222 6666666666666532  34566666666666666653331         2345566666666


Q ss_pred             ccccccccCCccCcCCCCCCEEecCCCcccc
Q 040195          221 AENNFVGSIPDSLSNASNLELLELAGNQFEG  251 (472)
Q Consensus       221 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~  251 (472)
                      ++|.+.+.  ..+..+++|+.|++++|.+..
T Consensus       158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             TTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             CCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            66666544  446666667777776666653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.65  E-value=1.4e-14  Score=138.19  Aligned_cols=88  Identities=7%  Similarity=0.066  Sum_probs=44.6

Q ss_pred             cccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCC
Q 040195          321 HFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQ  400 (472)
Q Consensus       321 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  400 (472)
                      ...|..|++|+.+++.+ .+......+|..+++|+.+.|.++ ++.....+|..+ +|+.+++.+|.........+..++
T Consensus       293 ~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~  369 (401)
T 4fdw_A          293 PYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP  369 (401)
T ss_dssp             TTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred             HHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence            34555555666666553 244344445555566666666443 333344455555 566666655555433334444442


Q ss_pred             -CCceEeecCCc
Q 040195          401 -NLIGFDASHIT  411 (472)
Q Consensus       401 -~L~~L~ls~~~  411 (472)
                       .++.|.+..+.
T Consensus       370 ~~l~~l~vp~~~  381 (401)
T 4fdw_A          370 DDITVIRVPAES  381 (401)
T ss_dssp             TTCCEEEECGGG
T ss_pred             CCccEEEeCHHH
Confidence             45555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=1.3e-14  Score=138.50  Aligned_cols=265  Identities=11%  Similarity=0.096  Sum_probs=170.2

Q ss_pred             CCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCC
Q 040195          157 LSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNA  236 (472)
Q Consensus       157 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~  236 (472)
                      +..++.+.+..+ ++......|.++ +|+.+.+..+ +       ..+....|.++ +|+++.+.. .+.......|.++
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i-------~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c  179 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-L-------KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYC  179 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-C-------CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTC
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-c-------cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCc
Confidence            456666666653 333444556654 6888887665 3       33444455553 578888775 5555566677788


Q ss_pred             CCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccc
Q 040195          237 SNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI  316 (472)
Q Consensus       237 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~  316 (472)
                      ++|+.+++..|.++......|. +.+|+.+.+..+ +.                   .+....+..+++|+.+.+..+ +
T Consensus       180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-------------------~I~~~aF~~~~~L~~l~l~~~-l  237 (401)
T 4fdw_A          180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-------------------EIGSQAFLKTSQLKTIEIPEN-V  237 (401)
T ss_dssp             TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-------------------EECTTTTTTCTTCCCEECCTT-C
T ss_pred             ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-------------------eehhhHhhCCCCCCEEecCCC-c
Confidence            8888888887777766666665 577777777643 22                   122223333446677777653 4


Q ss_pred             cCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCc-----cccccchhcccccCeeeccCCccccc
Q 040195          317 LGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLH-----GSIPSSLGNLTKLANLELSSNSLQGN  391 (472)
Q Consensus       317 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~l~~~~~L~~L~l~~~~~~~~  391 (472)
                      +.+...+|.. .+|+.+.+. +.+......+|..+++|+++.+.++.+.     .....+|..+++|+.+++.+ .++..
T Consensus       238 ~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I  314 (401)
T 4fdw_A          238 STIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL  314 (401)
T ss_dssp             CEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE
T ss_pred             cCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE
Confidence            5555556666 678888874 3455455667778888888888776553     34556777788888888874 45545


Q ss_pred             CCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCC-CCceEeccCCee
Q 040195          392 IPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLK-NLILLDISGNQF  461 (472)
Q Consensus       392 ~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~-~L~~L~L~~n~~  461 (472)
                      ...+|..|++|+.+.+..+ ++......|.++ +|+ .+++++|.........|.+++ +++.|.+..+.+
T Consensus       315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~-~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK-EVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC-EEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC-EEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            5667777888888888655 442334566777 777 788888777655566677664 677777776654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=6.5e-19  Score=175.71  Aligned_cols=104  Identities=26%  Similarity=0.279  Sum_probs=53.9

Q ss_pred             cceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecC
Q 040195          330 LIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASH  409 (472)
Q Consensus       330 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~  409 (472)
                      |+.|++++|.+.+ +|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            4555555555553 333 455555555555555555 444555555555555555555553 33 455555555555555


Q ss_pred             CcccccC-ChhhhhhcccceEEEcCCCcccc
Q 040195          410 ITLTGAL-PQQLLSITTLSLYLDLSHNLLNG  439 (472)
Q Consensus       410 ~~~~~~~-~~~l~~~~~l~~~L~ls~n~l~~  439 (472)
                      |.+++.. |..+..+++|+ .|++++|++++
T Consensus       518 N~l~~~~~p~~l~~l~~L~-~L~L~~N~l~~  547 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLV-LLNLQGNSLCQ  547 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCC-EEECTTSGGGG
T ss_pred             CCCCCCCCcHHHhcCCCCC-EEEecCCcCCC
Confidence            5555332 45555555555 55555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=1.7e-15  Score=136.38  Aligned_cols=147  Identities=24%  Similarity=0.302  Sum_probs=127.2

Q ss_pred             ccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195          304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL  383 (472)
Q Consensus       304 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  383 (472)
                      ++++.|++++|.++...  .+..+++|++|++++|.+.+..+  +..+++|++|++++|++.+ ++. +.. ++|++|++
T Consensus        41 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L  113 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFL  113 (263)
T ss_dssp             TTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEEC
T ss_pred             CcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEc
Confidence            38999999999998764  68889999999999999996654  8899999999999999985 333 233 99999999


Q ss_pred             cCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195          384 SSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG  463 (472)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~  463 (472)
                      ++|.+++ + ..+..+++|+.|++++|.+++ ++ .+..+++|+ .|++++|++++.  ..+..+++|+.|++++|+++.
T Consensus       114 ~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~-~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          114 DNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLE-VLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             CSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCC-EEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             cCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCC-EEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            9999985 3 358899999999999999984 44 688899999 999999999976  678999999999999999975


Q ss_pred             c
Q 040195          464 V  464 (472)
Q Consensus       464 ~  464 (472)
                      .
T Consensus       187 ~  187 (263)
T 1xeu_A          187 E  187 (263)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=4.5e-16  Score=130.35  Aligned_cols=136  Identities=26%  Similarity=0.259  Sum_probs=88.5

Q ss_pred             cCcceEeccccccc-cCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEe
Q 040195          328 VNLIALGMQSNQLH-GTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFD  406 (472)
Q Consensus       328 ~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  406 (472)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.++..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            55666666666665 34455556666666666666666543  4556666677777777766654555555577777777


Q ss_pred             ecCCcccccCC--hhhhhhcccceEEEcCCCccccccc---ccccCCCCCceEeccCCeeccccCCc
Q 040195          407 ASHITLTGALP--QQLLSITTLSLYLDLSHNLLNGSLL---LQVGNLKNLILLDISGNQFSGVIPVT  468 (472)
Q Consensus       407 ls~~~~~~~~~--~~l~~~~~l~~~L~ls~n~l~~~~~---~~l~~~~~L~~L~L~~n~~~~~~p~~  468 (472)
                      +++|.+.+ ++  ..+..+++|+ .|++++|++++..+   ..+..+++|+.|++++|.+. .+|..
T Consensus       102 Ls~N~l~~-~~~~~~l~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          102 LSGNKLKD-ISTLEPLKKLECLK-SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             CBSSSCCS-SGGGGGGSSCSCCC-EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             ccCCccCc-chhHHHHhcCCCCC-EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            77777663 33  5666777777 77777777775544   46777788888888888765 45543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=3.4e-15  Score=127.71  Aligned_cols=131  Identities=21%  Similarity=0.261  Sum_probs=92.5

Q ss_pred             ccEEEeecccccCcccccccCccCcceEeccccccccCcch-hhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195          306 MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD-VIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS  384 (472)
Q Consensus       306 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  384 (472)
                      .+.++++++.++.+.. .+.  +++++|++++|.+.+..+. .|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        10 ~~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            3677777777765433 222  3777777777777755543 46777777777777777776667777777777777777


Q ss_pred             CCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCccccc
Q 040195          385 SNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGS  440 (472)
Q Consensus       385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~  440 (472)
                      +|++++..+..+..+++|++|++++|.+++..|..+..+++++ .|++++|++...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~c~  141 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT-SLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC-EEECTTCCBCCS
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC-EEEeCCCCccCc
Confidence            7777766666677777777777777777766666777777777 777777777643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.1e-15  Score=125.12  Aligned_cols=128  Identities=23%  Similarity=0.279  Sum_probs=85.0

Q ss_pred             cCcceEeccccccc-cCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEe
Q 040195          328 VNLIALGMQSNQLH-GTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFD  406 (472)
Q Consensus       328 ~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  406 (472)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.++..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            56666667666665 45555566667777777777766644  5566677777777777777654555555677777777


Q ss_pred             ecCCccccc-CChhhhhhcccceEEEcCCCccccccc---ccccCCCCCceEeccC
Q 040195          407 ASHITLTGA-LPQQLLSITTLSLYLDLSHNLLNGSLL---LQVGNLKNLILLDISG  458 (472)
Q Consensus       407 ls~~~~~~~-~~~~l~~~~~l~~~L~ls~n~l~~~~~---~~l~~~~~L~~L~L~~  458 (472)
                      +++|.+.+. .+..+..+++++ .|++++|++++..+   ..+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLK-SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCC-EEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCC-EEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            777777631 225667777777 77777777775544   4667777777777753

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.58  E-value=5.4e-13  Score=127.70  Aligned_cols=138  Identities=11%  Similarity=0.104  Sum_probs=96.7

Q ss_pred             ccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcC
Q 040195          316 ILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLS  395 (472)
Q Consensus       316 ~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  395 (472)
                      +..+...+|..+..|+.+.+.++... ....+|..+++|+.+.+.. .++.....+|..+.+|+.+++.++ ++.....+
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a  329 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDA  329 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred             ceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence            33445567888899999998766443 5566788899999999964 344456668889999999999765 55455778


Q ss_pred             ccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCee
Q 040195          396 VGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQF  461 (472)
Q Consensus       396 ~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~  461 (472)
                      |..|.+|+.+.+..+ ++.--...|.+|.+|+ .+++.++...   ...+..+.+|+.+.+..+.+
T Consensus       330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~-~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALN-NIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC-EEEESSCHHH---HHTCBCCCCC----------
T ss_pred             hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC-EEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            999999999999765 4423356788999999 9999988654   25677888999998887764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=1e-14  Score=121.99  Aligned_cols=130  Identities=22%  Similarity=0.266  Sum_probs=54.6

Q ss_pred             CCccEEeccCCcCc-cCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEE
Q 040195           62 SFLRYINLSDNGFH-GEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA  140 (472)
Q Consensus        62 ~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  140 (472)
                      ++|++|++++|.+. ...|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            34444444444443 22333344444444444444444422  3344444444444444444432333333344444444


Q ss_pred             ccccCCCCCC-CccccCCCCccEEEecCCccccccc---cccccCCCccEEEccCCc
Q 040195          141 LYYNNLTGQL-PDFVGNLSALQVIYIRGNSLGGKIP---TTLGLLRNLVYLNVNENQ  193 (472)
Q Consensus       141 l~~~~i~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~  193 (472)
                      +++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            4444444211 1334444444444444444432221   133344444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=2.7e-14  Score=122.11  Aligned_cols=127  Identities=20%  Similarity=0.202  Sum_probs=75.1

Q ss_pred             cEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCC
Q 040195          307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSN  386 (472)
Q Consensus       307 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~  386 (472)
                      +.++++++.++.+... +  .++|++|++++|.+. .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            4566666666544321 2  245666666666665 44455666666666666666666555555666666666666666


Q ss_pred             cccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCccc
Q 040195          387 SLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLN  438 (472)
Q Consensus       387 ~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~  438 (472)
                      .++...+..+..+++|+.|++++|.+....+..+..+++++ .|++++|++.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS-HLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC-EEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc-EEEeCCCCee
Confidence            66655555566666666666666666632223455556666 6666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=8.3e-16  Score=158.14  Aligned_cols=146  Identities=24%  Similarity=0.264  Sum_probs=112.7

Q ss_pred             ccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195          304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL  383 (472)
Q Consensus       304 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  383 (472)
                      +.|+.|++++|.+..+ +..+..+++|++|+|++|.+. .+|..|+.+++|++|+|++|.++ .+|..+..+++|++|+|
T Consensus       224 ~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence            3677777777777644 334558899999999999998 77888899999999999999998 67888999999999999


Q ss_pred             cCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCC
Q 040195          384 SSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN  459 (472)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n  459 (472)
                      ++|.++ .+|..+..+++|+.|++++|.+.+.+|..+.........+++++|.+++.+|.      .|+.|++++|
T Consensus       301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            999998 78888999999999999999999777777766544332578999999876664      4566677776

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.54  E-value=1e-12  Score=125.87  Aligned_cols=128  Identities=13%  Similarity=0.118  Sum_probs=98.0

Q ss_pred             cCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEee
Q 040195          328 VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDA  407 (472)
Q Consensus       328 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  407 (472)
                      ..+..+.+.+. +......+|..++.|+.+.+.++... ....+|..++.|+.+.+.. .++.....+|..|.+|+.+.+
T Consensus       242 ~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~l  318 (394)
T 4gt6_A          242 REDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDI  318 (394)
T ss_dssp             CCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEC
T ss_pred             cccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEe
Confidence            34455555432 33355568999999999999877554 5667888999999999974 455456778999999999999


Q ss_pred             cCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCee
Q 040195          408 SHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQF  461 (472)
Q Consensus       408 s~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~  461 (472)
                      ..+ ++.-....|.+|.+|+ .+.+..+ ++.+...+|.+|++|+.+++.++..
T Consensus       319 p~~-v~~I~~~aF~~C~~L~-~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          319 PEG-ITQILDDAFAGCEQLE-RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCC-EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             CCc-ccEehHhHhhCCCCCC-EEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            875 4423356789999999 9999765 5556678999999999999999864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=3.5e-14  Score=119.85  Aligned_cols=130  Identities=21%  Similarity=0.123  Sum_probs=74.0

Q ss_pred             ccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccC
Q 040195          306 MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSS  385 (472)
Q Consensus       306 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~  385 (472)
                      .+.++++++.++.+...   ..++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            45666666665544321   124666666666666655555556666666666666666644444555666666666666


Q ss_pred             CcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccc
Q 040195          386 NSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNG  439 (472)
Q Consensus       386 ~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~  439 (472)
                      |.+++..+..+..+++|+.|++++|.+.+..+..+..+++++ .|++++|++.+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~-~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ-KIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC-EEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccC-EEEecCCCeec
Confidence            666644444455566666666666666532222334455555 66666665554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=3.3e-14  Score=121.56  Aligned_cols=112  Identities=21%  Similarity=0.226  Sum_probs=92.8

Q ss_pred             ccccEEEeecccccCcccc-cccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeee
Q 040195          304 STMTHFYIGGNQILGIIHF-GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLE  382 (472)
Q Consensus       304 ~~l~~l~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~  382 (472)
                      ..++.|+++++.++...+. .+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            3788888888888876654 478888888888888888877788888888888888888888877777788888888888


Q ss_pred             ccCCcccccCCcCccCCCCCceEeecCCccccc
Q 040195          383 LSSNSLQGNIPLSVGNCQNLIGFDASHITLTGA  415 (472)
Q Consensus       383 l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~  415 (472)
                      +++|++++..+..+..+++|+.|++++|++.+.
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            888888877788888888888888888888743

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.54  E-value=2.7e-16  Score=156.83  Aligned_cols=141  Identities=21%  Similarity=0.243  Sum_probs=113.7

Q ss_pred             cccccccCccCcceEe-ccccccccCcc--------hhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccc
Q 040195          319 IIHFGIRNLVNLIALG-MQSNQLHGTIP--------DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ  389 (472)
Q Consensus       319 ~~~~~l~~~~~L~~L~-l~~~~i~~~~~--------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~  389 (472)
                      ..+..+..+++|+.|+ ++.+.+.....        ..+. ...|+.|++++|.+++ +|. +..+++|+.|++++|.++
T Consensus       400 ~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~  476 (567)
T 1dce_A          400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR  476 (567)
T ss_dssp             GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred             CCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccC-ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence            3444566666777776 45443321100        0111 1359999999999985 565 899999999999999999


Q ss_pred             ccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccc-cccccCCCCCceEeccCCeeccccC
Q 040195          390 GNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSL-LLQVGNLKNLILLDISGNQFSGVIP  466 (472)
Q Consensus       390 ~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~-~~~l~~~~~L~~L~L~~n~~~~~~p  466 (472)
                       .+|..+..+++|+.|++++|.+++ +| .+..+++|+ .|++++|++++.. |..+..+++|+.|+|++|++++..|
T Consensus       477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~-~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          477 -ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ-ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC-EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc-EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence             889999999999999999999994 77 899999999 9999999999876 8999999999999999999986655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=1.4e-14  Score=118.53  Aligned_cols=108  Identities=18%  Similarity=0.222  Sum_probs=45.6

Q ss_pred             CCccEEeccCCcCc-cCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEE
Q 040195           62 SFLRYINLSDNGFH-GEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA  140 (472)
Q Consensus        62 ~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  140 (472)
                      ++|++|++++|.+. +..|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34444444444443 23333344444444444444444322  3344444444444444444432333333344444444


Q ss_pred             ccccCCCCC-CCccccCCCCccEEEecCCccc
Q 040195          141 LYYNNLTGQ-LPDFVGNLSALQVIYIRGNSLG  171 (472)
Q Consensus       141 l~~~~i~~~-~~~~l~~~~~L~~L~l~~~~~~  171 (472)
                      +++|.+++. .+..+..+++|++|++++|.++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            444444321 1133444444444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=1.9e-14  Score=121.28  Aligned_cols=133  Identities=16%  Similarity=0.161  Sum_probs=88.8

Q ss_pred             ccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCc
Q 040195          324 IRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLI  403 (472)
Q Consensus       324 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  403 (472)
                      +..+++|++|++++|.+.. ++......++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            4456677777777777763 333222234777777777777643  4666777777777777777743333346777777


Q ss_pred             eEeecCCcccccCCh--hhhhhcccceEEEcCCCcccccccc----cccCCCCCceEeccCCeec
Q 040195          404 GFDASHITLTGALPQ--QLLSITTLSLYLDLSHNLLNGSLLL----QVGNLKNLILLDISGNQFS  462 (472)
Q Consensus       404 ~L~ls~~~~~~~~~~--~l~~~~~l~~~L~ls~n~l~~~~~~----~l~~~~~L~~L~L~~n~~~  462 (472)
                      +|++++|.+. .++.  .+..+++++ .|++++|+++.. +.    .+..+++|+.|++++|...
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~-~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLT-YLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCC-EEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCC-EEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence            7777777775 4554  667777777 788888877643 43    3677778888888777654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.49  E-value=3.8e-13  Score=114.88  Aligned_cols=127  Identities=26%  Similarity=0.296  Sum_probs=87.1

Q ss_pred             EEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccC
Q 040195           41 TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN  120 (472)
Q Consensus        41 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~  120 (472)
                      +.++++++.+...... +  .++|++|++++|.+. .+|..+.++++|++|++++|.+....+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            3577777777654432 2  257788888888777 45567777788888888888777666666777777777777777


Q ss_pred             cCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccc
Q 040195          121 KLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLG  171 (472)
Q Consensus       121 ~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~  171 (472)
                      .++...+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            777655566777777777777777776444445666666666666666553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.49  E-value=2.2e-14  Score=147.52  Aligned_cols=143  Identities=24%  Similarity=0.288  Sum_probs=71.4

Q ss_pred             ccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCC
Q 040195          322 FGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQN  401 (472)
Q Consensus       322 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  401 (472)
                      ..+..++.|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  294 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ  294 (727)
T ss_dssp             ----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred             hhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence            34445555555555555555 33333335555555555555555 44555555555555555555555 44555555555


Q ss_pred             CceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCC-CCceEeccCCeeccccCCcc
Q 040195          402 LIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLK-NLILLDISGNQFSGVIPVTL  469 (472)
Q Consensus       402 L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~-~L~~L~L~~n~~~~~~p~~~  469 (472)
                      |++|++++|.+. .+|..+..+++|+ .|+|++|.+++..|..+..+. .+..++|++|.+++.+|..+
T Consensus       295 L~~L~L~~N~l~-~lp~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l  361 (727)
T 4b8c_D          295 LKYFYFFDNMVT-TLPWEFGNLCNLQ-FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER  361 (727)
T ss_dssp             CSEEECCSSCCC-CCCSSTTSCTTCC-CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             CCEEECCCCCCC-ccChhhhcCCCcc-EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence            555555555554 4555555555555 555555555554444443321 11224555555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=6.2e-13  Score=112.09  Aligned_cols=128  Identities=23%  Similarity=0.246  Sum_probs=91.1

Q ss_pred             EEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCc
Q 040195           42 ELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNK  121 (472)
Q Consensus        42 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~  121 (472)
                      .++++++.+......   ..++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus        11 ~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           11 EIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             EEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            455566666554322   23678888888888776666667888888888888888875555667778888888888888


Q ss_pred             CcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccc
Q 040195          122 LEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGG  172 (472)
Q Consensus       122 ~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~  172 (472)
                      ++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            775555556777888888888887775544555667777777777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=3.2e-13  Score=113.76  Aligned_cols=131  Identities=18%  Similarity=0.179  Sum_probs=76.4

Q ss_pred             ccCCCCccEEeccCCcCccCcchhhhcC-CCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCC
Q 040195           58 VGNLSFLRYINLSDNGFHGEIPQEIGNL-YRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKL  136 (472)
Q Consensus        58 l~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  136 (472)
                      +..+.+|++|++++|.+... +. +..+ ++|++|++++|.+.+.  ..+..+++|++|++++|.++...+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            44556666666666666532 32 3333 3677777776666533  456666667777776666664333334666666


Q ss_pred             cEEEccccCCCCCCCc--cccCCCCccEEEecCCcccccccc----ccccCCCccEEEccCCcc
Q 040195          137 QTLALYYNNLTGQLPD--FVGNLSALQVIYIRGNSLGGKIPT----TLGLLRNLVYLNVNENQF  194 (472)
Q Consensus       137 ~~L~l~~~~i~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l  194 (472)
                      ++|++++|.+. .++.  .+..+++|+.|++++|.++ ..+.    .+..+++|+.|++++|..
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            66666666665 3343  4556666666666666665 2333    255566666666666553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=4.4e-15  Score=127.86  Aligned_cols=132  Identities=25%  Similarity=0.262  Sum_probs=103.8

Q ss_pred             cccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCC
Q 040195          323 GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL  402 (472)
Q Consensus       323 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  402 (472)
                      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .++..+..+++|++|++++|.+++ ++ .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            67788889999999998885 45 6778889999999999887 566677777889999999998884 44 57778889


Q ss_pred             ceEeecCCcccccCC--hhhhhhcccceEEEcCCCcccccccc----------cccCCCCCceEeccCCeecc
Q 040195          403 IGFDASHITLTGALP--QQLLSITTLSLYLDLSHNLLNGSLLL----------QVGNLKNLILLDISGNQFSG  463 (472)
Q Consensus       403 ~~L~ls~~~~~~~~~--~~l~~~~~l~~~L~ls~n~l~~~~~~----------~l~~~~~L~~L~L~~n~~~~  463 (472)
                      +.|++++|.+.+ ++  ..+..+++++ .|++++|++.+..|.          .+..+++|+.||  +++++.
T Consensus       118 ~~L~l~~N~i~~-~~~~~~l~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          118 RVLYMSNNKITN-WGEIDKLAALDKLE-DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEEESEEECCC-HHHHHHHTTTTTCS-EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CEEECCCCcCCc-hhHHHHHhcCCCCC-EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            999999998873 33  3677888888 899999988765544          277888888886  676653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=2.7e-15  Score=129.18  Aligned_cols=136  Identities=23%  Similarity=0.229  Sum_probs=98.9

Q ss_pred             CccCcceEeccccccccCcch------hhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCC
Q 040195          326 NLVNLIALGMQSNQLHGTIPD------VIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC  399 (472)
Q Consensus       326 ~~~~L~~L~l~~~~i~~~~~~------~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  399 (472)
                      ..+.++.++++++.+.+..|.      .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.++ .++..+..+
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence            344555556666655555444      67778888888888888875 55 7778888888888888887 566666667


Q ss_pred             CCCceEeecCCcccccCChhhhhhcccceEEEcCCCccccccc-ccccCCCCCceEeccCCeeccccCC
Q 040195          400 QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLL-LQVGNLKNLILLDISGNQFSGVIPV  467 (472)
Q Consensus       400 ~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~-~~l~~~~~L~~L~L~~n~~~~~~p~  467 (472)
                      ++|++|++++|.+.+ ++ .+..+++++ .|++++|++++..+ ..+..+++|+.|++++|++++.+|.
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~-~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLR-VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSS-EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCC-EEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            888888888888873 44 577788888 88888888875332 4677788888888888888766554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=3e-14  Score=134.57  Aligned_cols=163  Identities=18%  Similarity=0.130  Sum_probs=115.4

Q ss_pred             cccccEEEeecccccCcccccccC-----ccCcceEeccccccccCcchhh-cCCCCCcEEEccCCcCccccccchh---
Q 040195          303 SSTMTHFYIGGNQILGIIHFGIRN-----LVNLIALGMQSNQLHGTIPDVI-GELKNLQILSLFGNFLHGSIPSSLG---  373 (472)
Q Consensus       303 ~~~l~~l~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~---  373 (472)
                      .+.++.+++++|.++......+..     .++|++|+|++|.+.+.....+ ..+++|++|+|++|.+++.....+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            357889999988887654333332     2689999999998875544333 2356888999999988755444432   


Q ss_pred             --cccccCeeeccCCccccc----CCcCccCCCCCceEeecCCccccc----CChhhhhhcccceEEEcCCCccccc---
Q 040195          374 --NLTKLANLELSSNSLQGN----IPLSVGNCQNLIGFDASHITLTGA----LPQQLLSITTLSLYLDLSHNLLNGS---  440 (472)
Q Consensus       374 --~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~~~~~----~~~~l~~~~~l~~~L~ls~n~l~~~---  440 (472)
                        ..+.|++|++++|.++..    ++..+..+++|++|++++|.+.+.    ++..+..++.|+ .|+|++|.+++.   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~-~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ-ELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCC-EEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcC-eEECCCCCCCHHHHH
Confidence              457899999999988742    334456788899999999988742    245566677888 899999988864   


Q ss_pred             -ccccccCCCCCceEeccCCeeccccC
Q 040195          441 -LLLQVGNLKNLILLDISGNQFSGVIP  466 (472)
Q Consensus       441 -~~~~l~~~~~L~~L~L~~n~~~~~~p  466 (472)
                       +...+...++|++|+|++|++++...
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~  256 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGR  256 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence             33445566889999999998875443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.33  E-value=1.3e-13  Score=130.13  Aligned_cols=133  Identities=18%  Similarity=0.172  Sum_probs=66.2

Q ss_pred             CcceEeccccccccCcchhh-----cCCCCCcEEEccCCcCccc----cccchhcccccCeeeccCCccccc----CCcC
Q 040195          329 NLIALGMQSNQLHGTIPDVI-----GELKNLQILSLFGNFLHGS----IPSSLGNLTKLANLELSSNSLQGN----IPLS  395 (472)
Q Consensus       329 ~L~~L~l~~~~i~~~~~~~~-----~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~  395 (472)
                      +|+.|+|++|.+.+.....+     ...++|++|+|++|.+++.    ++..+..+++|++|+|++|.++..    +...
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            44555555555543322222     2345566666666655432    223334555666666666665532    2334


Q ss_pred             ccCCCCCceEeecCCccccc----CChhhhhhcccceEEEcCCCcccccccccccCC---C--CCceEe--ccCCeec
Q 040195          396 VGNCQNLIGFDASHITLTGA----LPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNL---K--NLILLD--ISGNQFS  462 (472)
Q Consensus       396 ~~~~~~L~~L~ls~~~~~~~----~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~---~--~L~~L~--L~~n~~~  462 (472)
                      +..+++|++|++++|.+++.    ++..+..++.|+ .|+|++|.+++.....+..+   .  .|+.+.  +.++.++
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~-~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLE-LLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCC-EEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCC-EEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            45556666666666666532    233344456666 77777777765444444333   1  155565  5555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=5e-12  Score=105.57  Aligned_cols=106  Identities=19%  Similarity=0.202  Sum_probs=79.0

Q ss_pred             cceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecC
Q 040195          330 LIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASH  409 (472)
Q Consensus       330 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~  409 (472)
                      .+.++++++.+.. +|..+  .++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            5678888888874 44433  37788888888888877777788888888888888888855555667788888888888


Q ss_pred             CcccccCChhhhhhcccceEEEcCCCcccc
Q 040195          410 ITLTGALPQQLLSITTLSLYLDLSHNLLNG  439 (472)
Q Consensus       410 ~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~  439 (472)
                      |.+.+..+..+..+++|+ .|++++|++..
T Consensus        88 N~l~~~~~~~~~~l~~L~-~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLT-HIWLLNNPWDC  116 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCC-EEECCSSCBCT
T ss_pred             CccCEeCHHHhcCCCCCC-EEEeCCCCCCC
Confidence            888743344577777787 88888887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.31  E-value=3.7e-10  Score=107.42  Aligned_cols=166  Identities=11%  Similarity=0.076  Sum_probs=100.7

Q ss_pred             CCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccC
Q 040195          212 LPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS  291 (472)
Q Consensus       212 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  291 (472)
                      ...+..+.+.... .......+..+..|+.+.+..+ +.......+.++..|+.+.+..+ +..                
T Consensus       193 ~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~----------------  253 (379)
T 4h09_A          193 AKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTS----------------  253 (379)
T ss_dssp             TCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCE----------------
T ss_pred             cccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccE----------------
Confidence            3445555544322 1133344556667777766543 33344555666677777766543 211                


Q ss_pred             CCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccc
Q 040195          292 SLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSS  371 (472)
Q Consensus       292 ~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  371 (472)
                         +....+.....++.+.+.. .+..+....|..|++|+.+.+.++.+......+|..+.+|+++.|..+ ++.....+
T Consensus       254 ---I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a  328 (379)
T 4h09_A          254 ---IGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYA  328 (379)
T ss_dssp             ---ECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred             ---eCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHH
Confidence               1111222223556666643 244455567888888888888888777666678888888999888765 54455668


Q ss_pred             hhcccccCeeeccCCcccccCCcCccCCCCC
Q 040195          372 LGNLTKLANLELSSNSLQGNIPLSVGNCQNL  402 (472)
Q Consensus       372 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  402 (472)
                      |..+++|+.+.+..+ ++.....+|..|+.+
T Consensus       329 F~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          329 FKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             TTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             hhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            888888998888664 554455667666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.31  E-value=5.1e-10  Score=106.50  Aligned_cols=140  Identities=9%  Similarity=0.072  Sum_probs=84.3

Q ss_pred             cccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195          305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS  384 (472)
Q Consensus       305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  384 (472)
                      .++.+.+... +..+....+..+..|+.+.+..+ +......+|..+.+|+.+.+..+ +......+|..+++|+.+.+.
T Consensus       218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~  294 (379)
T 4h09_A          218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMD  294 (379)
T ss_dssp             SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEEC
T ss_pred             ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccc
Confidence            4455554322 33344456667777777777655 44344556777777777777654 333444566777777777777


Q ss_pred             CCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCC
Q 040195          385 SNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKN  450 (472)
Q Consensus       385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~  450 (472)
                      ++.++.....+|..|.+|+.+.+..+ ++.--...|.+|.+|+ .+.+..+ ++.+...+|.++..
T Consensus       295 ~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~-~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          295 NSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS-TISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC-CCCCCTT-CCEECTTTTTTSSC
T ss_pred             ccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC-EEEECCc-cCEEchhHhhCCCC
Confidence            77666555666777777777777654 3312235566777777 6766544 33344456666643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=1.1e-11  Score=103.87  Aligned_cols=105  Identities=20%  Similarity=0.181  Sum_probs=80.2

Q ss_pred             ceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCC
Q 040195          331 IALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHI  410 (472)
Q Consensus       331 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~  410 (472)
                      +.++++++.+. .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67888888887 4555443  78888888888888777778888888888888888888544455678888888888888


Q ss_pred             cccccCChhhhhhcccceEEEcCCCcccc
Q 040195          411 TLTGALPQQLLSITTLSLYLDLSHNLLNG  439 (472)
Q Consensus       411 ~~~~~~~~~l~~~~~l~~~L~ls~n~l~~  439 (472)
                      .+.+..+..+..+++|+ .|++++|++..
T Consensus        92 ~l~~l~~~~~~~l~~L~-~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLT-HIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCS-EEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCC-EEEeCCCCccc
Confidence            88843333477788888 88888888764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.27  E-value=2.3e-11  Score=101.48  Aligned_cols=107  Identities=22%  Similarity=0.186  Sum_probs=94.1

Q ss_pred             cccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195          305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS  384 (472)
Q Consensus       305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  384 (472)
                      ..+.++++++.++.+.. .+  .++|+.|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            46789999999887543 33  3889999999999998888889999999999999999997777778999999999999


Q ss_pred             CCcccccCCcCccCCCCCceEeecCCcccc
Q 040195          385 SNSLQGNIPLSVGNCQNLIGFDASHITLTG  414 (472)
Q Consensus       385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~  414 (472)
                      +|++++..+..+..+++|+.|++++|++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            999996666678999999999999999973

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=3.6e-11  Score=100.67  Aligned_cols=109  Identities=22%  Similarity=0.190  Sum_probs=92.9

Q ss_pred             ccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccC
Q 040195          306 MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSS  385 (472)
Q Consensus       306 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~  385 (472)
                      -+.++++++.++.+.. .+.  ++|+.|++++|.+.+..+..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~~iP~-~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPA-GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCC-CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            4688999998876544 333  8899999999999988888999999999999999999976666778999999999999


Q ss_pred             CcccccCCcCccCCCCCceEeecCCcccccCCh
Q 040195          386 NSLQGNIPLSVGNCQNLIGFDASHITLTGALPQ  418 (472)
Q Consensus       386 ~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~  418 (472)
                      |+++...+..+..+++|+.|++++|++. ..+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD-CECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC-TTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc-cccc
Confidence            9999655556899999999999999998 3443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.01  E-value=7.2e-10  Score=104.06  Aligned_cols=105  Identities=22%  Similarity=0.176  Sum_probs=85.3

Q ss_pred             ceEecccc-ccccCcchhhcCCCCCcEEEccC-CcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeec
Q 040195          331 IALGMQSN-QLHGTIPDVIGELKNLQILSLFG-NFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS  408 (472)
Q Consensus       331 ~~L~l~~~-~i~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls  408 (472)
                      ..++.+++ .+. .+|. +..+++|++|+|++ |.+.+..+..|..+++|+.|+|++|.+++..+..+..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34677777 777 5666 88889999999996 88887777788899999999999999998778888999999999999


Q ss_pred             CCcccccCChhhhhhcccceEEEcCCCcccc
Q 040195          409 HITLTGALPQQLLSITTLSLYLDLSHNLLNG  439 (472)
Q Consensus       409 ~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~  439 (472)
                      +|.+. .+|........|+ .|+|++|.+..
T Consensus        89 ~N~l~-~~~~~~~~~~~L~-~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALE-SLSWKTVQGLSLQ-ELVLSGNPLHC  117 (347)
T ss_dssp             SSCCS-CCCSTTTCSCCCC-EEECCSSCCCC
T ss_pred             CCccc-eeCHHHcccCCce-EEEeeCCCccC
Confidence            99998 4554444444477 99999998874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.99  E-value=1e-09  Score=103.05  Aligned_cols=104  Identities=19%  Similarity=0.148  Sum_probs=87.8

Q ss_pred             cEEEeecc-cccCcccccccCccCcceEeccc-cccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195          307 THFYIGGN-QILGIIHFGIRNLVNLIALGMQS-NQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS  384 (472)
Q Consensus       307 ~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  384 (472)
                      ..++++++ .++.+..  +..+++|++|+|++ |.+....+..|..+++|+.|+|++|.+.+..+..|..+++|++|+|+
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34677777 7776544  88899999999996 99997777889999999999999999998888889999999999999


Q ss_pred             CCcccccCCcCccCCCCCceEeecCCccc
Q 040195          385 SNSLQGNIPLSVGNCQNLIGFDASHITLT  413 (472)
Q Consensus       385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~  413 (472)
                      +|++++..+..+..++ |+.|++.+|++.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9999954444455555 999999999987

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=1.5e-09  Score=101.51  Aligned_cols=157  Identities=17%  Similarity=0.152  Sum_probs=102.6

Q ss_pred             cccEEEeeccccc---------CcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchh--
Q 040195          305 TMTHFYIGGNQIL---------GIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLG--  373 (472)
Q Consensus       305 ~l~~l~l~~~~~~---------~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--  373 (472)
                      +|+.|.+.+....         ..+...+..+|+|+.|+++++.-. ..+. + ..++|++|.+..|.+.......+.  
T Consensus       140 ~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence            7777877543221         112344567789999999887322 2222 3 378899999988887655444444  


Q ss_pred             cccccCeeeccCC--cccc-----cCCcCc--cCCCCCceEeecCCcccccCChhhh---hhcccceEEEcCCCcccccc
Q 040195          374 NLTKLANLELSSN--SLQG-----NIPLSV--GNCQNLIGFDASHITLTGALPQQLL---SITTLSLYLDLSHNLLNGSL  441 (472)
Q Consensus       374 ~~~~L~~L~l~~~--~~~~-----~~~~~~--~~~~~L~~L~ls~~~~~~~~~~~l~---~~~~l~~~L~ls~n~l~~~~  441 (472)
                      .+|+|++|+|+.+  ...+     .+...+  ..+++|+.|++++|.+.+..+..+.   .++.|+ .|+|+.|.+++..
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~-~LdLs~n~L~d~G  295 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE-TMDISAGVLTDEG  295 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCS-EEECCSSCCBHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCC-EEECCCCCCChHH
Confidence            6889999988532  1111     111112  3578999999999988754444444   367788 9999999888643


Q ss_pred             ----cccccCCCCCceEeccCCeecccc
Q 040195          442 ----LLQVGNLKNLILLDISGNQFSGVI  465 (472)
Q Consensus       442 ----~~~l~~~~~L~~L~L~~n~~~~~~  465 (472)
                          +..+..+++|+.|+|++|.+++..
T Consensus       296 ~~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          296 ARLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             HHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             HHHHHhhcccCCcceEEECCCCcCCHHH
Confidence                344456789999999999887553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=1.1e-08  Score=95.60  Aligned_cols=61  Identities=31%  Similarity=0.323  Sum_probs=41.8

Q ss_pred             hhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccccccc--ccCCCCeEEcCC
Q 040195          207 DILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFS--SLKNLAVLNLER  270 (472)
Q Consensus       207 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~  270 (472)
                      ..+..+|+|++|.++++... .++. +. .++|++|.+..+.+.......+.  .+|+|++|+|+.
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence            44567788888888877322 1222 33 78899999988877655544454  688899988853

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.73  E-value=2.8e-09  Score=89.99  Aligned_cols=117  Identities=15%  Similarity=0.139  Sum_probs=67.1

Q ss_pred             cccccCccCcceEecccc-ccccCc----chhhcCCCCCcEEEccCCcCcccc----ccchhcccccCeeeccCCccccc
Q 040195          321 HFGIRNLVNLIALGMQSN-QLHGTI----PDVIGELKNLQILSLFGNFLHGSI----PSSLGNLTKLANLELSSNSLQGN  391 (472)
Q Consensus       321 ~~~l~~~~~L~~L~l~~~-~i~~~~----~~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~~~~L~~L~l~~~~~~~~  391 (472)
                      ...+...++|++|+|++| .+.+..    ..++...++|++|+|++|.+.+..    ...+...+.|++|+|++|.+...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345566777888888877 776432    334555677777777777776432    33344456677777777766632


Q ss_pred             ----CCcCccCCCCCceEee--cCCccccc----CChhhhhhcccceEEEcCCCccc
Q 040195          392 ----IPLSVGNCQNLIGFDA--SHITLTGA----LPQQLLSITTLSLYLDLSHNLLN  438 (472)
Q Consensus       392 ----~~~~~~~~~~L~~L~l--s~~~~~~~----~~~~l~~~~~l~~~L~ls~n~l~  438 (472)
                          +...+...++|++|++  ++|.+.+.    +...+...+.++ .|++++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~-~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLL-KFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCC-EEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcC-EEeccCCCCC
Confidence                2344455556666666  55555422    223333344555 5555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.69  E-value=7.2e-09  Score=87.47  Aligned_cols=118  Identities=13%  Similarity=0.106  Sum_probs=79.4

Q ss_pred             cchhhcCCCCCcEEEccCC-cCccc----cccchhcccccCeeeccCCccccc----CCcCccCCCCCceEeecCCcccc
Q 040195          344 IPDVIGELKNLQILSLFGN-FLHGS----IPSSLGNLTKLANLELSSNSLQGN----IPLSVGNCQNLIGFDASHITLTG  414 (472)
Q Consensus       344 ~~~~~~~~~~L~~L~L~~n-~l~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~~~~  414 (472)
                      +...+...+.|++|+|++| .+.+.    +...+...+.|++|+|++|.+...    +...+...++|++|++++|.+.+
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3345666788888888887 77643    334455667788888888877642    33445556778888888888764


Q ss_pred             c----CChhhhhhcccceEEEc--CCCccccc----ccccccCCCCCceEeccCCeec
Q 040195          415 A----LPQQLLSITTLSLYLDL--SHNLLNGS----LLLQVGNLKNLILLDISGNQFS  462 (472)
Q Consensus       415 ~----~~~~l~~~~~l~~~L~l--s~n~l~~~----~~~~l~~~~~L~~L~L~~n~~~  462 (472)
                      .    +...+...+.++ .|++  ++|.+++.    +.+.+...++|++|+|++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~-~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQSNTSLI-ELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGGGCSSCC-EEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCce-EEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2    344556666777 8888  77887754    3345555678888888888775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.57  E-value=2.3e-08  Score=82.09  Aligned_cols=82  Identities=12%  Similarity=0.119  Sum_probs=36.1

Q ss_pred             CCcEEEccCCcCccccccchhcccccCeeeccCCc-ccccCCcCccC----CCCCceEeecCCc-ccccCChhhhhhccc
Q 040195          353 NLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNS-LQGNIPLSVGN----CQNLIGFDASHIT-LTGALPQQLLSITTL  426 (472)
Q Consensus       353 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~ls~~~-~~~~~~~~l~~~~~l  426 (472)
                      .|++|++++|.+++.....+..+++|++|+|++|. +++.....+..    +++|+.|++++|. +++.-...+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555554444444455555555555553 33222222222    1234444444442 443333333444444


Q ss_pred             ceEEEcCCC
Q 040195          427 SLYLDLSHN  435 (472)
Q Consensus       427 ~~~L~ls~n  435 (472)
                      + .|++++|
T Consensus       142 ~-~L~L~~c  149 (176)
T 3e4g_A          142 K-YLFLSDL  149 (176)
T ss_dssp             C-EEEEESC
T ss_pred             C-EEECCCC
Confidence            4 4444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.51  E-value=3.9e-08  Score=80.74  Aligned_cols=84  Identities=13%  Similarity=0.140  Sum_probs=61.9

Q ss_pred             cCcceEeccccccccCcchhhcCCCCCcEEEccCCc-Cccccccchhcc----cccCeeeccCCc-ccccCCcCccCCCC
Q 040195          328 VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNF-LHGSIPSSLGNL----TKLANLELSSNS-LQGNIPLSVGNCQN  401 (472)
Q Consensus       328 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~----~~L~~L~l~~~~-~~~~~~~~~~~~~~  401 (472)
                      .+|+.|+++++.+++.....+..+++|++|+|++|. +++.....+..+    ++|++|++++|. ++......+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            357777888777777666667778888888888884 666655556553    478888888885 77555555677888


Q ss_pred             CceEeecCCc
Q 040195          402 LIGFDASHIT  411 (472)
Q Consensus       402 L~~L~ls~~~  411 (472)
                      |+.|++++|+
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            8888888885

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.11  E-value=1.1e-06  Score=77.94  Aligned_cols=40  Identities=30%  Similarity=0.330  Sum_probs=20.4

Q ss_pred             CCCCCcEEEccCCcCcc--ccccchhcccccCeeeccCCccc
Q 040195          350 ELKNLQILSLFGNFLHG--SIPSSLGNLTKLANLELSSNSLQ  389 (472)
Q Consensus       350 ~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~l~~~~~~  389 (472)
                      .+++|++|+|++|.+.+  .++..+..+++|+.|+|++|.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence            34555555555555553  22233444555555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.05  E-value=3.5e-06  Score=74.55  Aligned_cols=80  Identities=29%  Similarity=0.419  Sum_probs=55.1

Q ss_pred             cCccCcceEecccccccc--CcchhhcCCCCCcEEEccCCcCccccccchhccc--ccCeeeccCCcccccCCc------
Q 040195          325 RNLVNLIALGMQSNQLHG--TIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLT--KLANLELSSNSLQGNIPL------  394 (472)
Q Consensus       325 ~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~------  394 (472)
                      ..+++|+.|+|++|.+.+  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|++++|++.+.++.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            456888999999998886  3345667889999999999988754  2233333  788888888887754431      


Q ss_pred             -CccCCCCCceEe
Q 040195          395 -SVGNCQNLIGFD  406 (472)
Q Consensus       395 -~~~~~~~L~~L~  406 (472)
                       .+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             234456665554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.81  E-value=9.8e-06  Score=67.76  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=72.1

Q ss_pred             cccCccCcceEecccc-ccccC----cchhhcCCCCCcEEEccCCcCcccc----ccchhcccccCeeeccCCccccc--
Q 040195          323 GIRNLVNLIALGMQSN-QLHGT----IPDVIGELKNLQILSLFGNFLHGSI----PSSLGNLTKLANLELSSNSLQGN--  391 (472)
Q Consensus       323 ~l~~~~~L~~L~l~~~-~i~~~----~~~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~~~~L~~L~l~~~~~~~~--  391 (472)
                      .+..-+.|++|+|+++ .|.+.    +.+++...+.|+.|+|++|.+.+..    .+++...+.|++|+|++|.|...  
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3445567888888775 66543    3445666778888888888876543    33444667788888888877743  


Q ss_pred             --CCcCccCCCCCceEeecCCc---ccc----cCChhhhhhcccceEEEcCCCccc
Q 040195          392 --IPLSVGNCQNLIGFDASHIT---LTG----ALPQQLLSITTLSLYLDLSHNLLN  438 (472)
Q Consensus       392 --~~~~~~~~~~L~~L~ls~~~---~~~----~~~~~l~~~~~l~~~L~ls~n~l~  438 (472)
                        +..++...++|++|+++++.   +.+    .+...+...+.+. .|+++.|.+.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~-~L~l~~~~~g  170 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLL-RVGISFASME  170 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCC-EEECCCCCHH
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcC-eEeccCCCcc
Confidence              33445556677777776542   221    2334555566666 7777666554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.73  E-value=1.2e-05  Score=67.23  Aligned_cols=116  Identities=10%  Similarity=0.157  Sum_probs=88.3

Q ss_pred             chhhcCCCCCcEEEccCC-cCccc----cccchhcccccCeeeccCCccccc----CCcCccCCCCCceEeecCCccccc
Q 040195          345 PDVIGELKNLQILSLFGN-FLHGS----IPSSLGNLTKLANLELSSNSLQGN----IPLSVGNCQNLIGFDASHITLTGA  415 (472)
Q Consensus       345 ~~~~~~~~~L~~L~L~~n-~l~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~~~~~  415 (472)
                      ...+..-+.|++|+|+++ .+.+.    +.+++.....|+.|+|++|.+...    +...+...++|+.|+++.|.|.+.
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            345567799999999986 77643    456677789999999999999854    334455779999999999999743


Q ss_pred             ----CChhhhhhcccceEEEcCCC---ccccc----ccccccCCCCCceEeccCCee
Q 040195          416 ----LPQQLLSITTLSLYLDLSHN---LLNGS----LLLQVGNLKNLILLDISGNQF  461 (472)
Q Consensus       416 ----~~~~l~~~~~l~~~L~ls~n---~l~~~----~~~~l~~~~~L~~L~L~~n~~  461 (472)
                          +...+.....|+ .|+|+++   .+++.    +.+.+..-+.|+.|+++.|.+
T Consensus       114 Ga~ala~aL~~N~tL~-~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIV-EFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHTTTTCCCS-EEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhhCCcee-EEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                344566667788 9999865   55542    446677778999999988764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.35  E-value=0.0044  Score=48.15  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=28.1

Q ss_pred             eeeccCCccc-ccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCccc
Q 040195          380 NLELSSNSLQ-GNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLN  438 (472)
Q Consensus       380 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~  438 (472)
                      .++.+++.++ ..+|..  -.++|+.|+|++|.++..-+..|..+++++ .|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~-~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALR-TAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCC-EEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccC-EEEecCCCee
Confidence            4555555554 233322  123566666666666522223445555555 6666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.62  E-value=0.019  Score=44.54  Aligned_cols=35  Identities=31%  Similarity=0.317  Sum_probs=13.9

Q ss_pred             CcEEEccCCcCccccccchhcccccCeeeccCCcc
Q 040195          354 LQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSL  388 (472)
Q Consensus       354 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~  388 (472)
                      |++|+|++|.++..-+..|..+++|+.|+|.+|++
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            44444444444333333333344444444444433

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=80.63  E-value=1.8  Score=31.39  Aligned_cols=47  Identities=15%  Similarity=0.141  Sum_probs=25.9

Q ss_pred             cccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCC
Q 040195          315 QILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN  362 (472)
Q Consensus       315 ~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n  362 (472)
                      .++.+....|..|++|+.+.|..+ ++.....+|..|.+|+.+.+.+.
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            344445556666666666666654 22244455666666666666443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	472
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 90.6 bits (223), Expect = 8e-21
 Identities = 75/287 (26%), Positives = 113/287 (39%), Gaps = 25/287 (8%)

Query: 10  HDPSGVTSSWNNTINLCQ--WMGVTC--GHRHQRVTELDLSNQRIGGV--LSPYVGNLSF 63
            +P+   SSW  T + C   W+GV C    +  RV  LDLS   +     +   + NL +
Sbjct: 19  GNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77

Query: 64  LRYINLSDN-GFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKL 122
           L ++ +       G IP  I  L +L  L +++ + SG IP  LS+   L  L  + N L
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

Query: 123 EGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQV-IYIRGNSLGGKIPTTLGLL 181
            G +P  I SL  L  +    N ++G +PD  G+ S L   + I  N L GKIP T   L
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 182 RNLVYLNVNENQFWYVSSFSGSLPFDILVN---------------LPNLKKLCIAENNFV 226
                           S   GS      ++                 NL  L +  N   
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 227 GSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNL 273
           G++P  L+    L  L ++ N   G++     +L+   V     N  
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 60/275 (21%), Positives = 91/275 (33%), Gaps = 31/275 (11%)

Query: 131 GSLLKLQTLALYYNNLTG--QLPDFVGNLSALQVIYIRGN-SLGGKIPTTLGLLRNLVYL 187
               ++  L L   NL     +P  + NL  L  +YI G  +L G IP  +  L  L YL
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 188 NVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGN 247
            +                 D L  +  L  L  + N   G++P S+S+  NL  +   GN
Sbjct: 107 YITHTNVSGA-------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 248 QFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMT 307
           +  G +   + S   L        N                              ++   
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNR--------------------LTGKIPPTFANLNL 199

Query: 308 HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS 367
            F      +L      +            +          +G  KNL  L L  N ++G+
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259

Query: 368 IPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
           +P  L  L  L +L +S N+L G IP   GN Q  
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRF 293

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.1 bits (131), Expect = 5e-09
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 1/109 (0%)

Query: 19  WNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEI 78
           + +          +      + T+     +         VG    L  ++L +N  +G +
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260

Query: 79  PQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIP 127
           PQ +  L  L  L +S N+  G IP              ANNK     P
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 60/259 (23%), Positives = 93/259 (35%), Gaps = 40/259 (15%)

Query: 231 DSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNC 290
           D+ +    +  L+L+G        I  SSL NL  LN                  ++   
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPYLN----------------FLYIGGI 86

Query: 291 SSLKLP-HSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIG 349
           ++L  P        + + + YI    + G I   +  +  L+ L    N L GT+P  I 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146

Query: 350 ELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASH 409
            L NL  ++  GN + G+IP S G+ +KL      S +             NL   D S 
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206

Query: 410 ITLT----------------------GALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGN 447
             L                        A     + ++     LDL +N + G+L   +  
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 448 LKNLILLDISGNQFSGVIP 466
           LK L  L++S N   G IP
Sbjct: 267 LKFLHSLNVSFNNLCGEIP 285

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 58/282 (20%), Positives = 89/282 (31%), Gaps = 38/282 (13%)

Query: 199 SFSGSLPF-DILVNLPNLKKLCIAEN-NFVGSIPDSLSNASNLELLELAGNQFEGKVSID 256
           +     P    L NLP L  L I    N VG IP +++  + L  L +      G +   
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

Query: 257 FSSLKNLAVLNLERNNLGIGTANDLGFVTFLT------NCSSLKLPHSIANLSSTMTHFY 310
            S +K L  L+   N L       +  +  L       N  S  +P S  + S   T   
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 311 IGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPS 370
           I  N++ G I     NL         S  +      V+                      
Sbjct: 181 ISRNRLTGKIPPTFANLNLAFVD--LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

Query: 371 SLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYL 430
            +G    L  L+L +N + G +P  +   + L                           L
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH-------------------------SL 273

Query: 431 DLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSIC 472
           ++S N L G  + Q GNL+   +   + N+     P  L  C
Sbjct: 274 NVSFNNLCGE-IPQGGNLQRFDVSAYANNKCLCGSP--LPAC 312

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.7 bits (190), Expect = 3e-16
 Identities = 75/380 (19%), Positives = 123/380 (32%), Gaps = 27/380 (7%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS 97
               +  L    +   +S    +L  +  +     G        +  L  L ++  SNN 
Sbjct: 22  AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQ 77

Query: 98  FSGTIP----TNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDF 153
            +   P    T L       +       L         +L   Q   +        L   
Sbjct: 78  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 154 VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLP 213
             + + +  I         +  +    + +L  L           S +      +L  L 
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 214 NLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNL 273
           NL+ L    N      P      +NL+ L L GNQ +   +   +SL NL  L+L  N +
Sbjct: 198 NLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI 253

Query: 274 GIGTANDLGFVTFLTNCSSLKLP----HSIANLSSTMTHFYIGGNQILGIIHFGIRNLVN 329
                ++L  ++ LT  + LKL      +I+ L+       +  N+        I NL N
Sbjct: 254 -----SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308

Query: 330 LIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ 389
           L  L +  N +    P  +  L  LQ L    N +  S  SSL NLT +  L    N + 
Sbjct: 309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQIS 364

Query: 390 GNIPLSVGNCQNLIGFDASH 409
              PL   N   +     + 
Sbjct: 365 DLTPL--ANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 74.3 bits (181), Expect = 5e-15
 Identities = 73/362 (20%), Positives = 117/362 (32%), Gaps = 35/362 (9%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS 97
            +VT L      I  +    V  L+ L  IN S+N      P  + NL +L  + ++NN 
Sbjct: 44  DQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 99

Query: 98  FSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNL 157
            +   P           L          +                 +N    +    G  
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTN-----LNRLELSSNTISDISALSGLT 154

Query: 158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVS------------SFSGSLP 205
           S  Q+ +    +    +     L R  +  N   +                    S   P
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214

Query: 206 FDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAV 265
             IL    NL +L +  N        +L++ +NL  L+LA NQ         S L  L  
Sbjct: 215 LGIL---TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTE 267

Query: 266 LNLERNNL-GIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGI 324
           L L  N +  I     L  +T L    +     S  +    +T+  +  N I  I     
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS- 326

Query: 325 RNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS 384
            +L  L  L   +N++  +    +  L N+  LS   N +    P  L NLT++  L L+
Sbjct: 327 -SLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 381

Query: 385 SN 386
             
Sbjct: 382 DQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.3 bits (163), Expect = 9e-13
 Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 23/240 (9%)

Query: 8   HQHDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYI 67
                + +T+     I+  +   ++   +   +  L  +N +I  +       L+ L  +
Sbjct: 167 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDEL 224

Query: 68  NLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIP 127
           +L+ N         + +L  L  L+L+NN  S   P  LS  ++LT L++  N++    P
Sbjct: 225 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 280

Query: 128 KEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYL 187
               + L         N    +    + NL  L  + +  N++    P  +  L  L  L
Sbjct: 281 LAGLTALTNL----ELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 334

Query: 188 NVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGN 247
               N+   VSS +         NL N+  L    N      P  L+N + +  L L   
Sbjct: 335 FFANNKVSDVSSLA---------NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.9 bits (149), Expect = 5e-11
 Identities = 79/384 (20%), Positives = 132/384 (34%), Gaps = 34/384 (8%)

Query: 84  NLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYY 143
            L    K  L   + + T+    +   ++T L+     ++      +  L  L  +    
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 144 NNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGS 203
           N LT   P  + NL+ L  I +  N +    P         + L  N+           +
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 204 LPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNL 263
           L    L +        ++    +  +           L  L   +     S   S +  L
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 264 AVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFG 323
           A   L      I T N +  +T L   ++L                 + GNQ+  I    
Sbjct: 194 A--KLTNLESLIATNNQISDITPLGILTNL-------------DELSLNGNQLKDIGTLA 238

Query: 324 IRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL 383
             +L NL  L + +NQ+    P  +  L  L  L L  N +    P  L  LT L NLEL
Sbjct: 239 --SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 292

Query: 384 SSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLL 443
           + N  Q      + N +NL         ++   P  + S+T L   L  ++N ++   + 
Sbjct: 293 NEN--QLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ-RLFFANNKVSD--VS 345

Query: 444 QVGNLKNLILLDISGNQFSGVIPV 467
            + NL N+  L    NQ S + P+
Sbjct: 346 SLANLTNINWLSAGHNQISDLTPL 369

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 5e-09
 Identities = 66/337 (19%), Positives = 113/337 (33%), Gaps = 30/337 (8%)

Query: 132 SLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNE 191
           +L +     L   N+T  +     +L  +  +      +  K    +  L NL  +N + 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 75

Query: 192 NQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEG 251
           NQ   ++            NL  L  + +  N      P +         L         
Sbjct: 76  NQLTDITPLK---------NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126

Query: 252 KVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYI 311
            +    +  +     N       I   + L  +T L   S       +  L++  T   +
Sbjct: 127 PLKNLTNLNRLELSSNT------ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180

Query: 312 GGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSS 371
             +         +  L NL +L   +NQ+    P  I    NL  LSL GN L      +
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGT 236

Query: 372 LGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLD 431
           L +LT L +L+L++N +    PLS      L         ++   P   L+  T     +
Sbjct: 237 LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLELNE 294

Query: 432 LSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVT 468
                ++      + NLKNL  L +  N  S + PV+
Sbjct: 295 NQLEDIS-----PISNLKNLTYLTLYFNNISDISPVS 326

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 7e-09
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 6   IPHQHDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLR 65
           I +    +G+T+  N  +N  Q   ++     + +T L L    I  +    V +L+ L+
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQ 332

Query: 66  YINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN 120
            +  ++N         + NL  +  L   +N  S   P  L+  + +T L + + 
Sbjct: 333 RLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 4e-16
 Identities = 62/278 (22%), Positives = 97/278 (34%), Gaps = 21/278 (7%)

Query: 26  CQWMGVTCGHRH---------QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHG 76
           C    V C                  LDL N +I  +      NL  L  + L +N    
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 77  EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKL 136
             P     L +LE+L LS N              EL        K+   +   +  ++ +
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 137 QTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY 196
           + L       +G        +  L  I I   ++   IP   GL  +L  L+++ N+   
Sbjct: 130 E-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITK 185

Query: 197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID 256
           V           L  L NL KL ++ N+       SL+N  +L  L L  N+   KV   
Sbjct: 186 V-------DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 237

Query: 257 FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLK 294
            +  K + V+ L  NN+    +ND     + T  +S  
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 4e-14
 Identities = 61/328 (18%), Positives = 105/328 (32%), Gaps = 42/328 (12%)

Query: 64  LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLE 123
           LR +  SD G   ++P+++        L+L NN  +     +      L  L + NNK+ 
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 124 GQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRN 183
              P     L+KL+ L L  N L          L  L+V       +   +   L  +  
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 184 LVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLE 243
           +             +             +  L  + IA+ N   +IP  L    +L  L 
Sbjct: 129 VELGTNPLKSSGIEN--------GAFQGMKKLSYIRIADTNI-TTIPQGLP--PSLTELH 177

Query: 244 LAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLS 303
           L GN+     +     L NLA L L  N++       L     L                
Sbjct: 178 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL---------------- 221

Query: 304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHG------TIPDVIGELKNLQIL 357
                     N  L  +  G+ +   +  + + +N +          P    +  +   +
Sbjct: 222 ----RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277

Query: 358 SLFGNFLHGS--IPSSLGNLTKLANLEL 383
           SLF N +      PS+   +   A ++L
Sbjct: 278 SLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 3e-12
 Identities = 48/260 (18%), Positives = 81/260 (31%), Gaps = 15/260 (5%)

Query: 213 PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNN 272
           P+   L +  N           N  NL  L L  N+        F+ L  L  L L +N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 273 LGIGTANDLGFVTFLTN----CSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLV 328
           L          +  L       + ++           +        +  GI +   + + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 329 NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSL 388
            L  + +    +  TIP   G   +L  L L GN +     +SL  L  LA L LS NS+
Sbjct: 151 KLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 389 QGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNG------SLL 442
                 S+ N  +L     ++  L    P  L     +   + L +N ++          
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQ-VVYLHNNNISAIGSNDFCPP 265

Query: 443 LQVGNLKNLILLDISGNQFS 462
                  +   + +  N   
Sbjct: 266 GYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 4e-12
 Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 5/181 (2%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
            CS L L     +L        +  N+I  I     +NL NL  L + +N++    P   
Sbjct: 16  QCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 349 GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS 408
             L  L+ L L  N L          L +L   E     ++ ++  +  N   ++    +
Sbjct: 76  APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTN 134

Query: 409 HITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVT 468
            +  +G        +  LS    ++   +     +  G   +L  L + GN+ + V   +
Sbjct: 135 PLKSSGIENGAFQGMKKLSYI-RIADTNITT---IPQGLPPSLTELHLDGNKITKVDAAS 190

Query: 469 L 469
           L
Sbjct: 191 L 191

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 2e-12
 Identities = 49/291 (16%), Positives = 85/291 (29%), Gaps = 22/291 (7%)

Query: 108 RCSELTHLRV--ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYI 165
            C     +        L+  +P  I +    Q + L+ N ++            L ++++
Sbjct: 7   VCYNEPKVTTSCPQQGLQ-AVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 166 RGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNF 225
             N L                L + E      ++   S+       L  L  L +     
Sbjct: 64  HSNVLARIDA------AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 226 VGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVT 285
               P      + L+ L L  N  +      F  L NL  L L  N +          + 
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 286 FLT------NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQ 339
            L       N  +   PH+  +L   +   Y+  N +  +    +  L  L  L +  N 
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDL-GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 340 LHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG 390
                         LQ      + +  S+P  L          L++N LQG
Sbjct: 237 WVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 4e-11
 Identities = 41/253 (16%), Positives = 69/253 (27%), Gaps = 44/253 (17%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEI--------------------- 78
              + L   RI  V +        L  + L  N                           
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 79  ----PQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLL 134
               P     L RL  L L         P      + L +L + +N L+         L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 135 KLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF 194
            L  L L+ N ++         L +L  + +  N +    P     L  L+ L +  N  
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 195 WYVSSFSGSLPF----------------DILVNLPNLKKLCIAENNFVGSIPDSLSNASN 238
             + + + +                           L+K   + +    S+P  L   + 
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL---AG 270

Query: 239 LELLELAGNQFEG 251
            +L  LA N  +G
Sbjct: 271 RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 6e-10
 Identities = 45/257 (17%), Positives = 82/257 (31%), Gaps = 11/257 (4%)

Query: 213 PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERN- 271
              +++ +  N        S     NL +L L  N      +  F+ L  L  L+L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 272 NLGIGTANDLGFVTFLT-----NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRN 326
            L          +  L       C   +L   +    + + + Y+  N +  +     R+
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 327 LVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSN 386
           L NL  L +  N++          L +L  L L  N +    P +  +L +L  L L +N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 387 SLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVG 446
           +L      ++   + L     +              +         S + +  SL     
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL---PQ 266

Query: 447 NLKNLILLDISGNQFSG 463
            L    L  ++ N   G
Sbjct: 267 RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 38/185 (20%), Positives = 60/185 (32%), Gaps = 2/185 (1%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
           +C    L      + +     ++ GN+I  +     R   NL  L + SN L        
Sbjct: 17  SCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 349 GELKNLQILSLFGNFLHGSI-PSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDA 407
             L  L+ L L  N    S+ P++   L +L  L L    LQ   P        L     
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 408 SHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPV 467
               L          +  L+ +L L  N ++         L +L  L +  N+ + V P 
Sbjct: 137 QDNALQALPDDTFRDLGNLT-HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 468 TLSIC 472
                
Sbjct: 196 AFRDL 200

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 35/189 (18%), Positives = 61/189 (32%), Gaps = 6/189 (3%)

Query: 203 SLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKN 262
           +LP D+     +   L ++EN        +L   + L  L L   +           +  
Sbjct: 24  ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80

Query: 263 LAVLNLERNNLGIGTANDLGFVTFLTNCSS--LKLPHSIANLSSTMTHFYIGGNQILGII 320
              L+  +          L  +T L    +    LP         +   Y+ GN++  + 
Sbjct: 81  TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 321 HFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLAN 380
              +     L  L + +N L      ++  L+NL  L L  N L+ +IP        L  
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 381 LELSSNSLQ 389
             L  N   
Sbjct: 200 AFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 7e-06
 Identities = 41/186 (22%), Positives = 67/186 (36%), Gaps = 11/186 (5%)

Query: 64  LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLE 123
              ++LS+N  +      +    RL +L L     +            +      ++   
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG---TLPVLGTLDLSHNQL 89

Query: 124 GQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRN 183
             +P    +L  L  L + +N LT      +  L  LQ +Y++GN L    P  L     
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 184 LVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLE 243
           L  L++  N           LP  +L  L NL  L + EN+   +IP     +  L    
Sbjct: 150 LEKLSLANNNLT-------ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

Query: 244 LAGNQF 249
           L GN +
Sbjct: 202 LHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 37/192 (19%), Positives = 64/192 (33%), Gaps = 13/192 (6%)

Query: 81  EIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA 140
           E+  +    ++     + +  +P +L +  + T L ++ N L       +    +L  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 141 LYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSF 200
           L  +          G L  L  + +  N L                            + 
Sbjct: 62  L--DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG--------QTLPALTVLDVSFNR 111

Query: 201 SGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSL 260
             SLP   L  L  L++L +  N      P  L+    LE L LA N      +   + L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 261 KNLAVLNLERNN 272
           +NL  L L+ N+
Sbjct: 172 ENLDTLLLQENS 183

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 39/237 (16%), Positives = 71/237 (29%), Gaps = 33/237 (13%)

Query: 129 EIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLN 188
           E+  +     +     NLT  LP  +       ++++  N L      TL     L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 189 VNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ 248
           ++  +              +   LP L  L ++ N                       + 
Sbjct: 62  LDRAELTK---------LQVDGTLPVLGTLDLSHNQLQ--------------------SL 92

Query: 249 FEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTH 308
                ++   ++ +++   L    LG           +L       LP  +   +  +  
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 309 FYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLH 365
             +  N +  +    +  L NL  L +Q N L+ TIP        L    L GN   
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 41/186 (22%), Positives = 61/186 (32%), Gaps = 11/186 (5%)

Query: 40  VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
            T L LS   +       +   + L  +NL          Q  G L  L  L+LS+N   
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ 90

Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSA 159
                       LT L V+ N+L       +  L +LQ L L  N L    P  +     
Sbjct: 91  SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
           L+ + +  N+L       L  L NL  L + EN  + +                 L    
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP--------KGFFGSHLLPFAF 201

Query: 220 IAENNF 225
           +  N +
Sbjct: 202 LHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 324 IRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL 383
           +  + + + +      L   +P  +   K+  IL L  N L+    ++L   T+L  L L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 384 SSNS 387
               
Sbjct: 63  DRAE 66

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 8e-08
 Identities = 50/269 (18%), Positives = 83/269 (30%), Gaps = 23/269 (8%)

Query: 137 QTLALYYNNLTGQLPDFVGNLSALQVIYIR--GNSLGGKIPTTLGLLRNLVYLNVNENQF 194
           QTL L   NL    PD  G L +  VI  R   + +   +       R + +++++ +  
Sbjct: 3   QTLDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNS-- 56

Query: 195 WYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVS 254
                   S    IL     L+ L +        I ++L+  SNL  L L+G        
Sbjct: 57  ----VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG----- 107

Query: 255 IDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGN 314
                    A+  L  +   +   N      F      + + H    ++      Y    
Sbjct: 108 -----FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 162

Query: 315 QILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFG-NFLHGSIPSSLG 373
           Q   +     R    +      S  L         +L  LQ LSL     +       LG
Sbjct: 163 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 222

Query: 374 NLTKLANLELSSNSLQGNIPLSVGNCQNL 402
            +  L  L++      G + L      +L
Sbjct: 223 EIPTLKTLQVFGIVPDGTLQLLKEALPHL 251

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 33/244 (13%), Positives = 74/244 (30%), Gaps = 5/244 (2%)

Query: 38  QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGE-IPQEIGNLYRLEKLELSNN 96
           Q V         +   L+ +      +++++LS++      +   +    +L+ L L   
Sbjct: 23  QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 97  SFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGN 156
             S  I   L++ S L  L ++      +   +       +   L  +         V  
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 157 LSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSS--FSGSLPFDILVNLPN 214
             A     I   +L G          + +           +S      +  F     L  
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 215 LKKLCIAENNFV-GSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNL 273
           L+ L ++    +       L     L+ L++ G   +G + +   +L +L +       +
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTI 261

Query: 274 GIGT 277
              T
Sbjct: 262 ARPT 265

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 27/174 (15%), Positives = 59/174 (33%), Gaps = 6/174 (3%)

Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILG-IIHFGIRNLVNLIALGMQSNQLHGTIPDV 347
           +C+   L     ++    T   +  N++           L +L+ L ++ NQL G  P+ 
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73

Query: 348 IGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDA 407
                ++Q L L  N +          L +L  L L  N +   +P S  +  +L   + 
Sbjct: 74  FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133

Query: 408 SHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQF 461
           +             +         L+              ++++ + D+  ++F
Sbjct: 134 ASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 21/131 (16%), Positives = 35/131 (26%), Gaps = 9/131 (6%)

Query: 7   PHQHDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRY 66
            +  D                 +          +             +         L  
Sbjct: 229 LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEE 288

Query: 67  INLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQI 126
           +N+S+N    E+P     L   E+L  S N  +  +P        L  L V  N L  + 
Sbjct: 289 LNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EF 339

Query: 127 PKEIGSLLKLQ 137
           P    S+  L+
Sbjct: 340 PDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 93  LSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD 152
              N+ S  I +       L  L V+NNKL  ++P     L   + L   +N+L  ++P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPE 321

Query: 153 FVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLN 188
              N   L+ +++  N L  + P     + +L  +N
Sbjct: 322 LPQN---LKQLHVEYNPL-REFPDIPESVEDL-RMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 335 MQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPL 394
              N     I  +     +L+ L++  N L   +P+    L +   L  S N L   +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPE 321

Query: 395 SVGNCQNLIGFDASHITLTGALPQQLLSITTLSL 428
              N + L      +  L    P    S+  L +
Sbjct: 322 LPQNLKQL---HVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 193 QFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGK 252
              Y  + S +    +    P+L++L ++ N  +  +P        LE L  + N     
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-- 317

Query: 253 VSIDFSSLKNLAVLNLERNNL 273
             +     +NL  L++E N L
Sbjct: 318 -EVP-ELPQNLKQLHVEYNPL 336

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 10/91 (10%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 64  LRYINLSDNGF-HGEIPQEIGNLYRLEKLELSNNSFSG----TIPTNLSRCSELTHLRVA 118
           ++ +++           + +  L + + + L +   +      I + L     L  L + 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 119 NNKLEGQIPKEIGSLLKLQTLALYYNNLTGQ 149
           +N+L       +   L+  +  +   +L   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 2e-06
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 71  DNGFHGEIPQEIGNLYRLEKLELSNNSFSGT----IPTNLSRCSELTHLRVANNKLEGQI 126
           D G              L  L L++   S +    +   L     L  L ++NN L    
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 127 PKEIGSLLK-----LQTLALYYNNLTGQLPDFVGNL 157
             ++   ++     L+ L LY    + ++ D +  L
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 10/120 (8%)

Query: 8   HQHDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGV----LSPYVGNLSF 63
           ++       S+        + +    G     +  L L++  +       L+  +     
Sbjct: 339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 398

Query: 64  LRYINLSDNGFHGEIPQEIG-----NLYRLEKLELSNNSFSGTIPTNLSRCSE-LTHLRV 117
           LR ++LS+N        ++          LE+L L +  +S  +   L    +    LRV
Sbjct: 399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 328 VNLIALGMQSNQL-HGTIPDVIGELKNLQILSLFGNFLHG----SIPSSLGNLTKLANLE 382
           +++ +L +Q  +L      +++  L+  Q++ L    L       I S+L     LA L 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 383 LSSNSLQGNIPLSVGNC 399
           L SN L       V   
Sbjct: 62  LRSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 11/95 (11%), Positives = 29/95 (30%), Gaps = 10/95 (10%)

Query: 183 NLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNF----VGSIPDSLSNASN 238
           ++  L++   +       S +   ++L  L   + + + +          I  +L     
Sbjct: 3   DIQSLDIQCEEL------SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA 56

Query: 239 LELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNL 273
           L  L L  N+                   +++ +L
Sbjct: 57  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 134 LKLQTLALYYNNLT-GQLPDFVGNLSALQVIYIRGNSLGGK----IPTTLGLLRNLVYLN 188
           L +Q+L +    L+  +  + +  L   QV+ +    L       I + L +   L  LN
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 189 VNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNF 225
           +  N+          +   +      ++KL +     
Sbjct: 62  LRSNELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 214 NLKKLCIAENNFVGS-IPDSLSNASNLELLELAGNQFEGKVSIDFSS----LKNLAVLNL 268
           +++ L I       +   + L      +++ L           D SS       LA LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 269 ERNNLGIGTANDLGFVTFLTNCSSLKL 295
             N LG    + +       +C   KL
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKL 89

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 33/217 (15%), Positives = 65/217 (29%), Gaps = 15/217 (6%)

Query: 60  NLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVAN 119
            L+    I    +     + Q   +L  +  L       +      +   + L  L + +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 120 NKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSA-------LQVIYIRGNSLGG 172
           N++    P +  + +    L+         +       +          V  + G S   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 173 KIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDS 232
            +   L  + N+  L    N  +     +       L NL  L  L   +N      P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 233 LSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLE 269
           L++  NL  + L  NQ         ++  NL ++ L 
Sbjct: 191 LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 34/229 (14%), Positives = 59/229 (25%), Gaps = 20/229 (8%)

Query: 181 LRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLE 240
           L N + +   ++      + +         +L  +  L            + +   +NL 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA---------DLDGITTLSAFGTGVTTI--EGVQYLNNLI 66

Query: 241 LLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIA 300
            LEL  NQ       D + LKNL  +     +                    L       
Sbjct: 67  GLELKDNQI-----TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121

Query: 301 NLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLF 360
                           L  I              +       +    +  L  L  L   
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 361 GNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASH 409
            N +    P  L +L  L  + L +N +    PL+  N  NL     ++
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 5e-06
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 7/111 (6%)

Query: 355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTG 414
           ++L L    L  ++   L  L  + +L+LS N L+   P ++   + L    AS   L  
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 415 ALPQQLLSITTLSLYLDLSHNLLNG-SLLLQVGNLKNLILLDISGNQFSGV 464
                 L        L L +N L   + +  + +   L+LL++ GN     
Sbjct: 58  VDGVANLPRLQ---ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

Query: 43  LDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTI 102
           L L+++ +  +   ++  L  + +++LS N      P  +  L  LE   L  +  +   
Sbjct: 3   LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNALEN 57

Query: 103 PTNLSRCSELTHLRVANNKLEG-QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160
              ++    L  L + NN+L+     + + S  +L  L L  N+L          L+ +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 5/144 (3%)

Query: 77  EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKL 136
           ++   +   Y   +  L           +L   +    L   ++     +     ++ +L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPEL 67

Query: 137 QTLALYYNNLTGQ--LPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF 194
            +L L  N L     +   V     L+++ + GN L  +          L  L ++ N  
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 195 WYVSSFSGSLPFDILVNLPNLKKL 218
                   +    I    P L +L
Sbjct: 128 SDTFRDQSTYISAIRERFPKLLRL 151

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 36/205 (17%), Positives = 66/205 (32%), Gaps = 18/205 (8%)

Query: 181 LRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLE 240
               +  N+ +       + +          L ++ ++    ++        +    N+ 
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN---------ELNSIDQIIANNSDIKSVQG--IQYLPNVT 71

Query: 241 LLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIA 300
            L L GN+         ++LKNL  L L+ N +   ++          +         I 
Sbjct: 72  KLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH-NGISDIN 128

Query: 301 NLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLF 360
            L        +            +  L  L  L ++ NQ+   +P  +  L  LQ L L 
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186

Query: 361 GNFLHGSIPSSLGNLTKLANLELSS 385
            N +  S   +L  L  L  LEL S
Sbjct: 187 KNHI--SDLRALAGLKNLDVLELFS 209

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 21/228 (9%), Positives = 50/228 (21%), Gaps = 12/228 (5%)

Query: 26  CQWMGVTCGHRH---------QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHG 76
           C      C             +   EL     ++  +          L  I +S N    
Sbjct: 8   CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 77  EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKL 136
            I  ++ +            + +       +         +    +     K +  + K+
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNTGIKHLPDVHKI 124

Query: 137 QTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY 196
            +L     ++   +       ++   +      L         +          +     
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS 184

Query: 197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLEL 244
            ++    LP D+         L I+           L N   L     
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 6e-04
 Identities = 12/103 (11%), Positives = 22/103 (21%)

Query: 19  WNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEI 78
             + IN+      +          L L+   I  + +               +N      
Sbjct: 134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP 193

Query: 79  PQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNK 121
                       L++S           L    +L      N K
Sbjct: 194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 33/333 (9%), Positives = 82/333 (24%), Gaps = 17/333 (5%)

Query: 64  LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG----TIPTNLSRCSELTHLRVAN 119
           L+   ++       +   +     ++++ LS N+        +  N++   +L     ++
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 120 NKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLG 179
                   +   +L  L    L    L              Q   I   S    +     
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH--- 125

Query: 180 LLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNL 239
               L    +       ++     L  +         +  I   N + +        +  
Sbjct: 126 --LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 240 ELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSI 299
               L   +              L         L +    D  F    ++  ++ L    
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 300 ANLSSTMTHFYIGGNQILGII-HFGIRNLVNLIALGMQSNQLHGTIPDVIGE-----LKN 353
                 +    +       ++  F     + L  L +Q N++       +       + +
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 354 LQILSLFGNFLHGSIPSSLGNLTKLANLELSSN 386
           L  L L GN         +  + ++ +      
Sbjct: 304 LLFLELNGNRF-SEEDDVVDEIREVFSTRGRGE 335

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 23/138 (16%), Positives = 44/138 (31%), Gaps = 7/138 (5%)

Query: 55  SPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTH 114
           +    N    R ++L        I      L + + ++ S+N               L  
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 115 LRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG-QLPDFVGNLSALQVIYIRG---NSL 170
           L V NN++         +L  L  L L  N+L      D + +L +L  + I      + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 171 GGKIPTTLGLLRNLVYLN 188
                  +  +  +  L+
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	472
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.12
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.06
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.01
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.75
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.69

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=2.3e-28  Score=225.45  Aligned_cols=254  Identities=31%  Similarity=0.504  Sum_probs=174.4

Q ss_pred             CCCCCCCCCCCCCCCccc--ccceeeCCCC--CceEEEECCCCccCcc--cCccccCCCCccEEeccC-CcCccCcchhh
Q 040195           10 HDPSGVTSSWNNTINLCQ--WMGVTCGHRH--QRVTELDLSNQRIGGV--LSPYVGNLSFLRYINLSD-NGFHGEIPQEI   82 (472)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~l~~L~l~~~~~~~~--~~~~l~~~~~L~~L~L~~-~~~~~~~~~~~   82 (472)
                      .|| ..+++|..+.+||+  |.|+.|....  .+|+.|+++++.+.+.  ++..+.++++|++|+|++ |.+.+.+|..|
T Consensus        19 ~~~-~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i   97 (313)
T d1ogqa_          19 GNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI   97 (313)
T ss_dssp             TCC-GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG
T ss_pred             CCC-CcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc
Confidence            344 36899999999995  9999997543  4799999999988763  567888888888888886 56776778888


Q ss_pred             hcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCc-c
Q 040195           83 GNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL-Q  161 (472)
Q Consensus        83 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L-~  161 (472)
                      .++++|++|++++|.+.+..+..+..++.|+++++++|.+....|..+.++++++++++++|.+.+..|..+..+..+ +
T Consensus        98 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~  177 (313)
T d1ogqa_          98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT  177 (313)
T ss_dssp             GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred             ccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccc
Confidence            888888888888888877777778888888888888888776777788888888888888888777777777777665 6


Q ss_pred             EEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCE
Q 040195          162 VIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLEL  241 (472)
Q Consensus       162 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~  241 (472)
                      .+.++.|++++..+..+..+..+ .+++..+...      + .....+...++++.+++.++.+.+.++ .+..+++|+.
T Consensus       178 ~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~------~-~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~  248 (313)
T d1ogqa_         178 SMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLE------G-DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG  248 (313)
T ss_dssp             EEECCSSEEEEECCGGGGGCCCS-EEECCSSEEE------E-CCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCE
T ss_pred             ccccccccccccccccccccccc-cccccccccc------c-ccccccccccccccccccccccccccc-cccccccccc
Confidence            77777777776666666554433 4666555431      1 112223344555555555555543322 3444555555


Q ss_pred             EecCCCcccccccccccccCCCCeEEcCCCcC
Q 040195          242 LELAGNQFEGKVSIDFSSLKNLAVLNLERNNL  273 (472)
Q Consensus       242 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  273 (472)
                      |++++|++++..+..+.++++|++|++++|++
T Consensus       249 L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             ccCccCeecccCChHHhCCCCCCEEECcCCcc
Confidence            55555555544444555555555555544443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.2e-25  Score=213.48  Aligned_cols=342  Identities=22%  Similarity=0.292  Sum_probs=205.8

Q ss_pred             CCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEE
Q 040195           60 NLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTL  139 (472)
Q Consensus        60 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  139 (472)
                      .+.+|++|+++++.+++.  +++..+++|++|++++|.+++. + .++++++|++|++++|.+...  ..+.++++|+.+
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i--~~l~~l~~L~~L  115 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGL  115 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccccc--cccccccccccc
Confidence            445666666666666532  3456666666666666666533 2 266666666666666666532  235666666666


Q ss_pred             EccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEE
Q 040195          140 ALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC  219 (472)
Q Consensus       140 ~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~  219 (472)
                      ++.++.+.+..+  ......+.......+.+........................            ..+...+......
T Consensus       116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~  181 (384)
T d2omza2         116 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL------------KPLANLTTLERLD  181 (384)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC------------GGGTTCTTCCEEE
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccchh------------hhhcccccccccc
Confidence            666666553221  22334444554444443321111111111111111111111            1111222233333


Q ss_pred             cccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchh
Q 040195          220 IAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSI  299 (472)
Q Consensus       220 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  299 (472)
                      ...+...  ....+..+++++.+.+++|.++...  .+...++|++|++++|.+...                    ..+
T Consensus       182 ~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~--~~~~~~~L~~L~l~~n~l~~~--------------------~~l  237 (384)
T d2omza2         182 ISSNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDI--------------------GTL  237 (384)
T ss_dssp             CCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--------------------GGG
T ss_pred             ccccccc--cccccccccccceeeccCCccCCCC--cccccCCCCEEECCCCCCCCc--------------------chh
Confidence            3333222  1233445556666666666554322  234455666666666655321                    001


Q ss_pred             hhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccC
Q 040195          300 ANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLA  379 (472)
Q Consensus       300 ~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~  379 (472)
                      . ..++++.++++++.++...  .+..+++|++++++++.+.+..  .+..++.++.+.+++|.+.+  ...+..+++++
T Consensus       238 ~-~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~  310 (384)
T d2omza2         238 A-SLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLT  310 (384)
T ss_dssp             G-GCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCS
T ss_pred             h-cccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhcccC
Confidence            1 1125666666666666543  3677888999999998887543  36678899999999998874  23477889999


Q ss_pred             eeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCC
Q 040195          380 NLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN  459 (472)
Q Consensus       380 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n  459 (472)
                      .|++++|++++. + .+..+++|++|++++|+++ .++ .+..+++|+ +|++++|++++..|  +.++++|+.|+|++|
T Consensus       311 ~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~-~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         311 YLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNIN-WLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCC-EEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             eEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCC-EEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999999999853 3 3788999999999999997 344 688899999 99999999997644  889999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=2e-23  Score=197.83  Aligned_cols=341  Identities=23%  Similarity=0.274  Sum_probs=251.6

Q ss_pred             eccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCC
Q 040195           68 NLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLT  147 (472)
Q Consensus        68 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~  147 (472)
                      .+....+++...  .+.+.+|++|+++++.+.+.  +.+..+++|++|++++|+++. .+ .++++++|++|++++|.+.
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccc
Confidence            455444443322  45678999999999999743  468889999999999999984 33 4899999999999999998


Q ss_pred             CCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccc
Q 040195          148 GQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVG  227 (472)
Q Consensus       148 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  227 (472)
                      +..  .+..+++|+.+++.++.+++..  .......+.......+.+......       ................    
T Consensus       102 ~i~--~l~~l~~L~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~----  166 (384)
T d2omza2         102 DIT--PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISAL-------SGLTSLQQLSFGNQVT----  166 (384)
T ss_dssp             CCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGG-------TTCTTCSEEEEEESCC----
T ss_pred             ccc--cccccccccccccccccccccc--cccccccccccccccccccccccc-------cccccccccccccccc----
Confidence            543  3789999999999999886432  334556677777766665333211       1111111222211111    


Q ss_pred             cCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhcccccc
Q 040195          228 SIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMT  307 (472)
Q Consensus       228 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~  307 (472)
                       ....+.............+...  ....+..+++++.+.++++.+...                   +.  ....++++
T Consensus       167 -~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~-------------------~~--~~~~~~L~  222 (384)
T d2omza2         167 -DLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDI-------------------TP--LGILTNLD  222 (384)
T ss_dssp             -CCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCC-------------------GG--GGGCTTCC
T ss_pred             -hhhhhccccccccccccccccc--cccccccccccceeeccCCccCCC-------------------Cc--ccccCCCC
Confidence             1233445556666666665443  244567889999999999987531                   11  12234899


Q ss_pred             EEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCc
Q 040195          308 HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNS  387 (472)
Q Consensus       308 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~  387 (472)
                      .++++++.++..  ..+..+++|+.+++++|.+.+..+  +..+++|++|+++++++.+..  .+..++.++.+.+++|.
T Consensus       223 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~  296 (384)
T d2omza2         223 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQ  296 (384)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSC
T ss_pred             EEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccc
Confidence            999999998865  357888999999999999986543  678899999999999987443  36789999999999999


Q ss_pred             ccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccC
Q 040195          388 LQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIP  466 (472)
Q Consensus       388 ~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p  466 (472)
                      +.+  ...+..+++++.|++++|.+++ ++ .+..+++|+ .|++++|++++.  ..+.++++|+.|++++|++++..|
T Consensus       297 l~~--~~~~~~~~~l~~L~ls~n~l~~-l~-~l~~l~~L~-~L~L~~n~l~~l--~~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         297 LED--ISPISNLKNLTYLTLYFNNISD-IS-PVSSLTKLQ-RLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CSC--CGGGGGCTTCSEEECCSSCCSC-CG-GGGGCTTCC-EEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCBCGG
T ss_pred             ccc--ccccchhcccCeEECCCCCCCC-Cc-ccccCCCCC-EEECCCCCCCCC--hhHcCCCCCCEEECCCCcCCCChh
Confidence            884  3357889999999999999984 43 378899999 999999999853  368999999999999999987665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1.7e-24  Score=199.30  Aligned_cols=82  Identities=29%  Similarity=0.487  Sum_probs=39.9

Q ss_pred             CCcEEEcccCcCcc--cCCccccCCCCCcEEEccc-cCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEE
Q 040195          111 ELTHLRVANNKLEG--QIPKEIGSLLKLQTLALYY-NNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYL  187 (472)
Q Consensus       111 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  187 (472)
                      +++.|+++++.+.+  .+|..++++++|++|++++ |.+.+.+|..++++++|++|++++|.+.+..+..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            44555555554443  2344555555555555543 34444455555555555555555555544444444444444444


Q ss_pred             EccCC
Q 040195          188 NVNEN  192 (472)
Q Consensus       188 ~l~~~  192 (472)
                      +++.|
T Consensus       131 ~l~~N  135 (313)
T d1ogqa_         131 DFSYN  135 (313)
T ss_dssp             ECCSS
T ss_pred             ccccc
Confidence            44444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=5.6e-23  Score=188.23  Aligned_cols=109  Identities=22%  Similarity=0.147  Sum_probs=53.9

Q ss_pred             CCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEE
Q 040195          352 KNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLD  431 (472)
Q Consensus       352 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~  431 (472)
                      ++|++|++++|......+..+..++.++.|++++|.+....+.++..+++|++|++++|+++ .+|..+..+++|+ .|+
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~-~L~  248 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ-VVY  248 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC-EEE
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCC-EEE
Confidence            44455555555444444444444455555555555554444444445555555555555554 4444555555555 555


Q ss_pred             cCCCcccccccc------cccCCCCCceEeccCCeec
Q 040195          432 LSHNLLNGSLLL------QVGNLKNLILLDISGNQFS  462 (472)
Q Consensus       432 ls~n~l~~~~~~------~l~~~~~L~~L~L~~n~~~  462 (472)
                      +++|+|+.....      .+....+|+.|+|++|++.
T Consensus       249 Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            555555433222      2233455666666666553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.4e-22  Score=185.53  Aligned_cols=243  Identities=23%  Similarity=0.365  Sum_probs=127.4

Q ss_pred             CCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEec
Q 040195           87 RLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIR  166 (472)
Q Consensus        87 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~  166 (472)
                      ..+.++.++..++ ..|..+.  +.+++|++++|+++...+..|.++++|++|+++++.+....+..|..+++|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4566677666666 4455442  567777777777764444456777777777777777765556666667777777777


Q ss_pred             CCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCC
Q 040195          167 GNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAG  246 (472)
Q Consensus       167 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  246 (472)
                      +|+++. .+..  ..+.++.|++..|.+                               ....+..+.....+..+....
T Consensus        88 ~n~l~~-l~~~--~~~~l~~L~~~~n~l-------------------------------~~l~~~~~~~~~~~~~l~~~~  133 (305)
T d1xkua_          88 KNQLKE-LPEK--MPKTLQELRVHENEI-------------------------------TKVRKSVFNGLNQMIVVELGT  133 (305)
T ss_dssp             SSCCSB-CCSS--CCTTCCEEECCSSCC-------------------------------CBBCHHHHTTCTTCCEEECCS
T ss_pred             CCccCc-Cccc--hhhhhhhhhccccch-------------------------------hhhhhhhhhcccccccccccc
Confidence            776652 2322  223555565555544                               222222223334444444444


Q ss_pred             Cccc--ccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccc
Q 040195          247 NQFE--GKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGI  324 (472)
Q Consensus       247 ~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l  324 (472)
                      +...  ......+..+++|+.+++++|.+...                   +..   ..++++.++++++......+..+
T Consensus       134 n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-------------------~~~---~~~~L~~L~l~~n~~~~~~~~~~  191 (305)
T d1xkua_         134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTI-------------------PQG---LPPSLTELHLDGNKITKVDAASL  191 (305)
T ss_dssp             SCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-------------------CSS---CCTTCSEEECTTSCCCEECTGGG
T ss_pred             ccccccCCCccccccccccCccccccCCcccc-------------------Ccc---cCCccCEEECCCCcCCCCChhHh
Confidence            3221  12223445555556666655544311                   000   01134444444444444444445


Q ss_pred             cCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccc
Q 040195          325 RNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ  389 (472)
Q Consensus       325 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~  389 (472)
                      ..++.++.|++++|.+.+..+.++..+++|++|+|++|+++ .+|..+..+++|++|++++|+++
T Consensus       192 ~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             hccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            55555555555555555444555555555555555555554 33445555555555555555555

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4e-22  Score=180.41  Aligned_cols=224  Identities=22%  Similarity=0.233  Sum_probs=188.9

Q ss_pred             EEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcc-c
Q 040195           41 TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVA-N  119 (472)
Q Consensus        41 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~-~  119 (472)
                      .+++.+++.++..+. .+.  +++++|+|++|.++...+.+|.++++|++|+++++.+....+..+..+..++.+.+. .
T Consensus        14 ~~v~c~~~~L~~iP~-~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQAVPV-GIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCSSCCT-TCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCCccCC-CCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            345677777665432 232  578999999999987777789999999999999999887777778888999998775 4


Q ss_pred             CcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccc
Q 040195          120 NKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSS  199 (472)
Q Consensus       120 ~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~  199 (472)
                      +.+....+..+.++++|++|++++|.+....+..+...++|+.+++++|.++...+..|..+++|++|++++|.+     
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l-----  165 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-----  165 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-----
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc-----
Confidence            555655677889999999999999998866777778889999999999999866667888899999999999988     


Q ss_pred             cccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195          200 FSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG  274 (472)
Q Consensus       200 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  274 (472)
                        ..++...+..+++|+.+++.+|.+++..+..|..+++|+.|++++|.+....+.+|..+++|++|++++|++.
T Consensus       166 --~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         166 --SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             --CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             --cccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence              4455567778999999999999999888899999999999999999999888888999999999999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.6e-22  Score=181.66  Aligned_cols=254  Identities=19%  Similarity=0.164  Sum_probs=157.8

Q ss_pred             EEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccE
Q 040195          138 TLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK  217 (472)
Q Consensus       138 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~  217 (472)
                      .++.++..++ .+|..+.  +++++|++++|.++...+..|..+++|++|++++|.+..       ++...+...+.+..
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~-------i~~~~~~~~~~~~~   84 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-------IDAAAFTGLALLEQ   84 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-------ECTTTTTTCTTCCE
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccc-------cccccccccccccc
Confidence            3455555555 4454332  456777777777765555566777777777777776632       23333444555555


Q ss_pred             EEcc-cccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCC
Q 040195          218 LCIA-ENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLP  296 (472)
Q Consensus       218 L~l~-~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  296 (472)
                      +... .+.+....+..|+++++|++|++++|.+.......+...++|+.+++                            
T Consensus        85 l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l----------------------------  136 (284)
T d1ozna_          85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL----------------------------  136 (284)
T ss_dssp             EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC----------------------------
T ss_pred             cccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhh----------------------------
Confidence            5543 23333344455555666666666665554333334444444444444                            


Q ss_pred             chhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhccc
Q 040195          297 HSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLT  376 (472)
Q Consensus       297 ~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~  376 (472)
                                     +++.++.+.+..|..+++|+.|++++|.+....+.+|..+++|+++.+++|++.+..+..|..++
T Consensus       137 ---------------~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~  201 (284)
T d1ozna_         137 ---------------QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (284)
T ss_dssp             ---------------CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             ---------------ccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhh
Confidence                           44444544455667777888888888888766677778888888888888888877778888888


Q ss_pred             ccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCccccccccccc
Q 040195          377 KLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVG  446 (472)
Q Consensus       377 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~  446 (472)
                      +|++|++++|.+.+..+..+..+++|++|++++|++...-. ...-...++ ......+++....|..+.
T Consensus       202 ~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~-~~~l~~~l~-~~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQ-KFRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHHHH-HCCSEECCCBEEESGGGT
T ss_pred             hcccccccccccccccccccccccccCEEEecCCCCCCCcc-chHHHHHHH-hCcCCCCceEeCCchHHc
Confidence            88888888888886666677788888888888888773211 111112233 445555666655565554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.4e-20  Score=165.61  Aligned_cols=198  Identities=21%  Similarity=0.198  Sum_probs=124.0

Q ss_pred             CccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCC
Q 040195          214 NLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL  293 (472)
Q Consensus       214 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l  293 (472)
                      .+.+++.+++.++. +|..+  .+++++|++++|.++......|.++++|++|++++|.++....               
T Consensus        11 ~~~~v~C~~~~L~~-iP~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~---------------   72 (266)
T d1p9ag_          11 SHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---------------   72 (266)
T ss_dssp             TCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---------------
T ss_pred             CCeEEEccCCCCCe-eCcCc--CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc---------------
Confidence            34445555555553 33333  1356666666666655444555666666666666665531100               


Q ss_pred             cCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchh
Q 040195          294 KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLG  373 (472)
Q Consensus       294 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  373 (472)
                           . ...++|+.|++++|.+... +..+..+++|+.|+++++.+....+..+..+.++++|.+++|.+....+..+.
T Consensus        73 -----~-~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~  145 (266)
T d1p9ag_          73 -----D-GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT  145 (266)
T ss_dssp             -----C-SCCTTCCEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             -----c-ccccccccccccccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceecccccc
Confidence                 0 0012445555555544433 23456677778888887777766666667777788888888777766666666


Q ss_pred             cccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCccc
Q 040195          374 NLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLN  438 (472)
Q Consensus       374 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~  438 (472)
                      .++.++.+++++|++++..+..+..+++|+.|++++|.++ .+|..+..+++++ .|+|++|++.
T Consensus       146 ~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~-~L~L~~Np~~  208 (266)
T d1p9ag_         146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP-FAFLHGNPWL  208 (266)
T ss_dssp             TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS-EEECCSCCBC
T ss_pred             ccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCC-EEEecCCCCC
Confidence            7777888888888777656666777777888888887777 6777777777777 7777777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-19  Score=161.62  Aligned_cols=198  Identities=24%  Similarity=0.304  Sum_probs=121.2

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV  117 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l  117 (472)
                      ....+++.+++.++.. |..+.  +++++|+|++|.+....+.+|.++++|++|++++|.++.. + .+..+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~~i-P~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCee-CcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccc
Confidence            3455678888887654 33332  5788888888888766667788888888888888877632 2 3456777777777


Q ss_pred             ccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccc
Q 040195          118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV  197 (472)
Q Consensus       118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  197 (472)
                      ++|++. ..+..+..+++|+.|+++++.+....+..+..+.++++|.+++|.++...+..+..+++++.+++++|++   
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l---  160 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL---  160 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC---
T ss_pred             cccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc---
Confidence            777776 3455666677777777777766655555555666666666666666544444455555666666665554   


Q ss_pred             cccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcc
Q 040195          198 SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQF  249 (472)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~  249 (472)
                          ..++.+.+..+++|++|+|++|.++ .+|..+..+++|+.|++++|++
T Consensus       161 ----~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         161 ----TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             ----SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ----cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence                2223333444455555555555544 2333344444444444444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.9e-22  Score=195.71  Aligned_cols=385  Identities=18%  Similarity=0.155  Sum_probs=199.1

Q ss_pred             CceEEEECCCCccCccc-CccccCCCCccEEeccCCcCccC----cchhhhcCCCCCEEEccCcccCCC----CCcccC-
Q 040195           38 QRVTELDLSNQRIGGVL-SPYVGNLSFLRYINLSDNGFHGE----IPQEIGNLYRLEKLELSNNSFSGT----IPTNLS-  107 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~----~~~~l~-  107 (472)
                      ++++.||++++.+++.. ...+..++++++|+|++|.+++.    ++.++..+++|++|++++|.+++.    +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46889999999987653 34567788999999999987643    345567889999999999887532    122232 


Q ss_pred             CCCCCcEEEcccCcCccc----CCccccCCCCCcEEEccccCCCCCCCcccc-----CCCCccEEEecCCccccc----c
Q 040195          108 RCSELTHLRVANNKLEGQ----IPKEIGSLLKLQTLALYYNNLTGQLPDFVG-----NLSALQVIYIRGNSLGGK----I  174 (472)
Q Consensus       108 ~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~  174 (472)
                      ....|++|++++|.++..    ++..+..+++|++|++++|.+.+.....+.     ..................    .
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            335789999998888643    234566788888888888877633222221     112233344333332211    1


Q ss_pred             ccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccccccc----CCccCcCCCCCCEEecCCCccc
Q 040195          175 PTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGS----IPDSLSNASNLELLELAGNQFE  250 (472)
Q Consensus       175 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~~~~~  250 (472)
                      ...+.....++.++++++...+.+.  ................+.+.++.+...    ....+...+.++.+.+.++.+.
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~  239 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGV--RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  239 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHH--HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ccccccccccccccccccccccccc--cccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence            1223445667777777665432211  000001111223445566655544321    1112234556666666666543


Q ss_pred             ccc-----cccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCccccccc
Q 040195          251 GKV-----SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIR  325 (472)
Q Consensus       251 ~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~  325 (472)
                      ...     .........++.+++++|.+......                                       .....+.
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~---------------------------------------~~~~~l~  280 (460)
T d1z7xw1         240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG---------------------------------------DLCRVLR  280 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH---------------------------------------HHHHHHH
T ss_pred             ccccchhhcccccccccccccccccccccccccc---------------------------------------ccccccc
Confidence            221     11122344566666666554311000                                       0111222


Q ss_pred             CccCcceEeccccccccCcchh----h-cCCCCCcEEEccCCcCcccccc----chhcccccCeeeccCCccccc----C
Q 040195          326 NLVNLIALGMQSNQLHGTIPDV----I-GELKNLQILSLFGNFLHGSIPS----SLGNLTKLANLELSSNSLQGN----I  392 (472)
Q Consensus       326 ~~~~L~~L~l~~~~i~~~~~~~----~-~~~~~L~~L~L~~n~l~~~~~~----~l~~~~~L~~L~l~~~~~~~~----~  392 (472)
                      ..+.++.+++++|.+.+.....    + ...+.|+.+.+++|.+......    .+...++|++|+|++|+++..    +
T Consensus       281 ~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l  360 (460)
T d1z7xw1         281 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL  360 (460)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchh
Confidence            3344555555555444322111    1 1234566666666655433222    223344566666666665432    1


Q ss_pred             CcCcc-CCCCCceEeecCCcccc----cCChhhhhhcccceEEEcCCCcccccccccc----c-CCCCCceEeccCCeec
Q 040195          393 PLSVG-NCQNLIGFDASHITLTG----ALPQQLLSITTLSLYLDLSHNLLNGSLLLQV----G-NLKNLILLDISGNQFS  462 (472)
Q Consensus       393 ~~~~~-~~~~L~~L~ls~~~~~~----~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l----~-~~~~L~~L~L~~n~~~  462 (472)
                      ...+. ..+.|++|++++|.+++    .++..+..+++|+ +|++++|++++.....|    . +...|+.|++++|.+.
T Consensus       361 ~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~-~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR-ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC-EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             hhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCC-EEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            12221 24556666666666652    1333445556666 66666666654333222    2 2235666777666665


Q ss_pred             cc
Q 040195          463 GV  464 (472)
Q Consensus       463 ~~  464 (472)
                      ..
T Consensus       440 ~~  441 (460)
T d1z7xw1         440 EE  441 (460)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=5.8e-16  Score=143.95  Aligned_cols=70  Identities=23%  Similarity=0.207  Sum_probs=38.0

Q ss_pred             ccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceE
Q 040195          375 LTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILL  454 (472)
Q Consensus       375 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L  454 (472)
                      +++|++|++++|+++ .+|.   .+++|+.|++++|+++ .+|..   +++|+ .|++++|+++ .+|..   ..+|+.|
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~-~L~L~~N~L~-~lp~~---~~~L~~L  349 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLK-QLHVEYNPLR-EFPDI---PESVEDL  349 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCC-EEECCSSCCS-SCCCC---CTTCCEE
T ss_pred             CCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCC-EEECcCCcCC-CCCcc---ccccCee
Confidence            456666666666655 3442   2456666666666665 45432   23455 6677776665 33322   2355555


Q ss_pred             ecc
Q 040195          455 DIS  457 (472)
Q Consensus       455 ~L~  457 (472)
                      .++
T Consensus       350 ~~~  352 (353)
T d1jl5a_         350 RMN  352 (353)
T ss_dssp             ECC
T ss_pred             ECc
Confidence            554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.6e-21  Score=186.50  Aligned_cols=361  Identities=19%  Similarity=0.143  Sum_probs=199.9

Q ss_pred             CccEEeccCCcCccCc-chhhhcCCCCCEEEccCcccCCC----CCcccCCCCCCcEEEcccCcCcccC----Ccccc-C
Q 040195           63 FLRYINLSDNGFHGEI-PQEIGNLYRLEKLELSNNSFSGT----IPTNLSRCSELTHLRVANNKLEGQI----PKEIG-S  132 (472)
Q Consensus        63 ~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~-~  132 (472)
                      +|++|+++++.+++.. .+.+..++++++|+|++|.+++.    ++..+..+++|++|++++|.++...    ...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5778888888776532 33456677888888888876532    2234556777777777777765221    11221 1


Q ss_pred             CCCCcEEEccccCCCCCC----CccccCCCCccEEEecCCccccccccccc-----cCCCccEEEccCCccccccccccc
Q 040195          133 LLKLQTLALYYNNLTGQL----PDFVGNLSALQVIYIRGNSLGGKIPTTLG-----LLRNLVYLNVNENQFWYVSSFSGS  203 (472)
Q Consensus       133 l~~L~~L~l~~~~i~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~l~~~~~~~~~  203 (472)
                      ..+|++|++++|.+++..    +..+..+++|++|++++|.+.......+.     ....................   .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~  159 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC---E  159 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH---H
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhh---c
Confidence            235666666666665332    23344556666666666655432221111     01112222222211100000   0


Q ss_pred             cChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccccc----cc-ccCCCCeEEcCCCcCCCCCC
Q 040195          204 LPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID----FS-SLKNLAVLNLERNNLGIGTA  278 (472)
Q Consensus       204 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----l~-~l~~L~~L~l~~~~~~~~~~  278 (472)
                                              .....+.....++.+.++.+.........    +. .......+.+..+.+...+.
T Consensus       160 ------------------------~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~  215 (460)
T d1z7xw1         160 ------------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC  215 (460)
T ss_dssp             ------------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred             ------------------------ccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence                                    00011223344555555554433221111    11 11233445554443321110


Q ss_pred             CCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCc-----ccccccCccCcceEeccccccccCc----chhhc
Q 040195          279 NDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGI-----IHFGIRNLVNLIALGMQSNQLHGTI----PDVIG  349 (472)
Q Consensus       279 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~i~~~~----~~~~~  349 (472)
                      ..  .             .......+.++.+.+.++.+...     ..........++.+++++|.+....    ...+.
T Consensus       216 ~~--~-------------~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~  280 (460)
T d1z7xw1         216 RD--L-------------CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR  280 (460)
T ss_dssp             HH--H-------------HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             hc--c-------------cccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccc
Confidence            00  0             00011122455666665554321     2223445678999999998776432    23456


Q ss_pred             CCCCCcEEEccCCcCccccccch-----hcccccCeeeccCCcccccCC----cCccCCCCCceEeecCCccccc----C
Q 040195          350 ELKNLQILSLFGNFLHGSIPSSL-----GNLTKLANLELSSNSLQGNIP----LSVGNCQNLIGFDASHITLTGA----L  416 (472)
Q Consensus       350 ~~~~L~~L~L~~n~l~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ls~~~~~~~----~  416 (472)
                      ..+.++.+++++|.+.+.....+     .....|+.+++++|.++....    ..+..+++|++|++++|++.+.    +
T Consensus       281 ~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l  360 (460)
T d1z7xw1         281 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL  360 (460)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchh
Confidence            68999999999999875433322     234689999999999875432    3345678999999999998743    2


Q ss_pred             Chhhh-hhcccceEEEcCCCccccc----ccccccCCCCCceEeccCCeeccccC
Q 040195          417 PQQLL-SITTLSLYLDLSHNLLNGS----LLLQVGNLKNLILLDISGNQFSGVIP  466 (472)
Q Consensus       417 ~~~l~-~~~~l~~~L~ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~~~~~~p  466 (472)
                      +..+. ..+.|+ .|++++|.+++.    +.+.+..+++|++|+|++|++++...
T Consensus       361 ~~~l~~~~~~L~-~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~  414 (460)
T d1z7xw1         361 CQGLGQPGSVLR-VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI  414 (460)
T ss_dssp             HHHHTSTTCCCC-EEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred             hhhhhcccCCCC-EEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHH
Confidence            33333 355688 999999999864    34567778999999999999986543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=4.7e-16  Score=144.60  Aligned_cols=304  Identities=24%  Similarity=0.282  Sum_probs=186.0

Q ss_pred             CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195           38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV  117 (472)
Q Consensus        38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l  117 (472)
                      .++++||++++.++.. ++   ..++|++|++++|.++ .+|+.   +.+|++|++++|.+. .++. +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~l-p~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSL-PE---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCC-CS---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCC-CC---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence            3577899999888654 33   2468889999988887 44543   457888899888776 3332 1  246889999


Q ss_pred             ccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccc
Q 040195          118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV  197 (472)
Q Consensus       118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  197 (472)
                      ++|.+. .++. ++.+++|++|+++++.+.. .+.   ....+..+.+..+...  ....+..++.++.+.+.++.....
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             cccccc-cccc-hhhhccceeeccccccccc-ccc---ccccccchhhcccccc--ccccccccccceeccccccccccc
Confidence            998887 4443 5778889999998887762 332   2456667776665543  234566778888888888765333


Q ss_pred             cccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCC
Q 040195          198 SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGT  277 (472)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  277 (472)
                      ..           .....+.+...++.+.. .+ .+..++.|+.+.+++|..... +   ....++..+.+..+.+....
T Consensus       178 ~~-----------~~~~~~~l~~~~~~~~~-~~-~~~~l~~L~~l~l~~n~~~~~-~---~~~~~l~~~~~~~~~~~~~~  240 (353)
T d1jl5a_         178 PD-----------LPLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLTDLP  240 (353)
T ss_dssp             CC-----------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCSCCC
T ss_pred             cc-----------ccccccccccccccccc-cc-ccccccccccccccccccccc-c---cccccccccccccccccccc
Confidence            21           11233455555554442 22 356678888888888765422 1   23456677777776654211


Q ss_pred             CCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCc-cCcceEeccccccccCcchhhcCCCCCcE
Q 040195          278 ANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNL-VNLIALGMQSNQLHGTIPDVIGELKNLQI  356 (472)
Q Consensus       278 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  356 (472)
                      .                       ....+...++..+.+...     ..+ ......++..+.+.+    ....+++|++
T Consensus       241 ~-----------------------~~~~l~~~~~~~~~~~~l-----~~l~~~~~~~~~~~~~~~~----~~~~~~~L~~  288 (353)
T d1jl5a_         241 E-----------------------LPQSLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIRS----LCDLPPSLEE  288 (353)
T ss_dssp             C-----------------------CCTTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCSE----ECCCCTTCCE
T ss_pred             c-----------------------cccccccccccccccccc-----ccccchhcccccccCcccc----ccccCCCCCE
Confidence            0                       011333334333322211     111 223344455444442    2234577888


Q ss_pred             EEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChh
Q 040195          357 LSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQ  419 (472)
Q Consensus       357 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~  419 (472)
                      |++++|++. .+|.   .+++|+.|++++|+++ .++.   .+++|++|++++|+++ .+|..
T Consensus       289 L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~~  342 (353)
T d1jl5a_         289 LNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDI  342 (353)
T ss_dssp             EECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCCC
T ss_pred             EECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCcc
Confidence            888888877 4443   3577888888888877 4553   2467888888888877 56653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=9.3e-17  Score=139.47  Aligned_cols=204  Identities=24%  Similarity=0.319  Sum_probs=149.2

Q ss_pred             EEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCc
Q 040195           42 ELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNK  121 (472)
Q Consensus        42 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~  121 (472)
                      .+++..+.+.+..  .+..+.+|+.|++.+|.+.+.  +++..+++|++|++++|.+.+..  .+..+++++++++++|.
T Consensus        23 ~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCC
T ss_pred             HHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccc
Confidence            3455555555442  345677888888888887743  35788888888888888876432  37888888888888888


Q ss_pred             CcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccc
Q 040195          122 LEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFS  201 (472)
Q Consensus       122 ~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  201 (472)
                      ++.  ...+.++++|+.+.++++...+  ...+...+.++.+.++.+.+..  ...+..+++|++|++++|.+.+..   
T Consensus        97 ~~~--i~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~---  167 (227)
T d1h6ua2          97 LKN--VSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLT---  167 (227)
T ss_dssp             CSC--CGGGTTCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCCG---
T ss_pred             ccc--cccccccccccccccccccccc--cchhccccchhhhhchhhhhch--hhhhccccccccccccccccccch---
Confidence            763  2457788888888888877653  2345667888888888887753  234667888899999888764332   


Q ss_pred             cccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCC
Q 040195          202 GSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLER  270 (472)
Q Consensus       202 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  270 (472)
                            .+..+++|++|++++|.+++.  ..++++++|++|++++|++++..  .+.++++|+.|++++
T Consensus       168 ------~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 ------PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             ------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             ------hhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence                  245778899999998888753  23788899999999999887533  478888999988864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=3.7e-16  Score=135.59  Aligned_cols=188  Identities=24%  Similarity=0.324  Sum_probs=155.2

Q ss_pred             CCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEE
Q 040195           36 RHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHL  115 (472)
Q Consensus        36 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L  115 (472)
                      +..+++.|++.++.+...  ..+..+++|++|++++|.+....  .+..+++|+++++++|.++..  ..+..++.|+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--cccccccccccc
Confidence            346899999999999765  46899999999999999987543  489999999999999988733  458899999999


Q ss_pred             EcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195          116 RVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW  195 (472)
Q Consensus       116 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  195 (472)
                      +++++....  ...+...+.++.+.++.+.+...  ..+..+++|++|.+++|.+..  ...++.+++|++|++++|.+.
T Consensus       113 ~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         113 DLTSTQITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             ECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--cchhccccchhhhhchhhhhchh--hhhcccccccccccccccccc--chhhcccccceecccCCCccC
Confidence            999998763  34577789999999999888632  346788999999999998863  344788999999999999985


Q ss_pred             cccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCC
Q 040195          196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAG  246 (472)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  246 (472)
                      ++.         .+..+++|++|++++|.+++..  .++++++|+.|++++
T Consensus       187 ~l~---------~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         187 DIS---------PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCG---------GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             CCh---------hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            543         2557899999999999998643  388999999999863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.5e-16  Score=138.25  Aligned_cols=219  Identities=16%  Similarity=0.103  Sum_probs=158.5

Q ss_pred             EEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCC-CCcccCCCCCCcEEEccc
Q 040195           41 TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGT-IPTNLSRCSELTHLRVAN  119 (472)
Q Consensus        41 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~l~~  119 (472)
                      +.++.++..++.++.. +  .+++++|++++|.++...+.+|.++++|++|++++|.+... .+..|..++.++++.+..
T Consensus        11 ~~i~c~~~~l~~iP~~-l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSD-L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSC-S--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCC-C--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            3667777777654432 2  25899999999999866667899999999999999987643 345688899999998865


Q ss_pred             -CcCcccCCccccCCCCCcEEEccccCCCCCCCc-cccCCCCccEEEecCCccccccccccccC-CCccEEEccCCcccc
Q 040195          120 -NKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD-FVGNLSALQVIYIRGNSLGGKIPTTLGLL-RNLVYLNVNENQFWY  196 (472)
Q Consensus       120 -~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~  196 (472)
                       +.+....+..+.++++|+++++.++.+....+. .+..++.++.+...++.+.......+..+ ..++.+++.+|.+..
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             566666777789999999999999988743222 23345566666667767765555556555 478889999998744


Q ss_pred             ccccccccChhhhcCCCCccEE-EcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCC
Q 040195          197 VSSFSGSLPFDILVNLPNLKKL-CIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLER  270 (472)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~L~~L-~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  270 (472)
                      +       +...+ ..++++++ .+.++.++...+..|.++++|++|++++|+++......|.++++|+.+++.+
T Consensus       168 i-------~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         168 I-------HNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             E-------CTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             c-------ccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            4       33333 34566655 4677778766666789999999999999999866666677777676665544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1e-16  Score=143.87  Aligned_cols=83  Identities=19%  Similarity=0.235  Sum_probs=39.2

Q ss_pred             cCcceEecccc--ccccC-cchhhcCCCCCcEEEccCCc-CccccccchhcccccCeeeccCC-cccccCCcCccCCCCC
Q 040195          328 VNLIALGMQSN--QLHGT-IPDVIGELKNLQILSLFGNF-LHGSIPSSLGNLTKLANLELSSN-SLQGNIPLSVGNCQNL  402 (472)
Q Consensus       328 ~~L~~L~l~~~--~i~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L  402 (472)
                      ++|+.|+++++  .+.+. ....+..+++|++|++++|. +++.....+..+++|++|++++| .+++.....+..+++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            45555655543  22221 11222345555555555543 44444444555555555555554 2433333344455555


Q ss_pred             ceEeecCC
Q 040195          403 IGFDASHI  410 (472)
Q Consensus       403 ~~L~ls~~  410 (472)
                      +.|++++|
T Consensus       228 ~~L~l~~~  235 (284)
T d2astb2         228 KTLQVFGI  235 (284)
T ss_dssp             CEEECTTS
T ss_pred             CEEeeeCC
Confidence            55555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.6e-15  Score=129.59  Aligned_cols=165  Identities=24%  Similarity=0.323  Sum_probs=96.0

Q ss_pred             CCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEE
Q 040195           85 LYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIY  164 (472)
Q Consensus        85 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~  164 (472)
                      +.+|++|++++|.+.+.  ..+..+++|++|++++|+++. .+ .++.+++|+.|++++|.+++ ++ .+..+++|+.++
T Consensus        45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cccccccccccc
Confidence            44556666666655422  235556666666666666552 22 34556666666666666652 22 355566666666


Q ss_pred             ecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEec
Q 040195          165 IRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLEL  244 (472)
Q Consensus       165 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l  244 (472)
                      +++|.+..  ...+..+++++.+++++|.+.+..         .+..+++|+.+++++|.+++..  .++++++|++|++
T Consensus       119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~---------~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~L  185 (210)
T d1h6ta2         119 LEHNGISD--INGLVHLPQLESLYLGNNKITDIT---------VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYL  185 (210)
T ss_dssp             CTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCG---------GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred             cccccccc--cccccccccccccccccccccccc---------cccccccccccccccccccccc--cccCCCCCCEEEC
Confidence            66665532  234556666666666666653322         1334566777777777666432  2667777777777


Q ss_pred             CCCcccccccccccccCCCCeEEcCC
Q 040195          245 AGNQFEGKVSIDFSSLKNLAVLNLER  270 (472)
Q Consensus       245 ~~~~~~~~~~~~l~~l~~L~~L~l~~  270 (472)
                      ++|.+++.  ..+..+++|++|++++
T Consensus       186 s~N~i~~l--~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         186 SKNHISDL--RALAGLKNLDVLELFS  209 (210)
T ss_dssp             CSSCCCBC--GGGTTCTTCSEEEEEE
T ss_pred             CCCCCCCC--hhhcCCCCCCEEEccC
Confidence            77777642  3467777777777753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.8e-15  Score=132.77  Aligned_cols=105  Identities=17%  Similarity=0.261  Sum_probs=54.3

Q ss_pred             cEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCcc
Q 040195          137 QTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLK  216 (472)
Q Consensus       137 ~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~  216 (472)
                      +.++.++..++ .+|..+.  +++++|++++|.++......|.++++|++|++++|.+.      ..++...+..++.++
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~------~~i~~~~f~~l~~l~   81 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL------EVIEADVFSNLPKLH   81 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTC------CEECSSSEESCTTCC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhcccccc------ceeeccccccccccc
Confidence            45666666565 4443332  35667777776666444445666666666666666531      112233344455555


Q ss_pred             EEEccc-ccccccCCccCcCCCCCCEEecCCCccc
Q 040195          217 KLCIAE-NNFVGSIPDSLSNASNLELLELAGNQFE  250 (472)
Q Consensus       217 ~L~l~~-~~l~~~~~~~l~~~~~L~~L~l~~~~~~  250 (472)
                      ++.+.. +.+....+..|.++++|+.++++++.+.
T Consensus        82 ~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          82 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             EEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccccccccchhhhc
Confidence            555443 3333344444555555555555555443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=4.2e-15  Score=125.85  Aligned_cols=162  Identities=26%  Similarity=0.371  Sum_probs=105.4

Q ss_pred             CCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEE
Q 040195           60 NLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTL  139 (472)
Q Consensus        60 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  139 (472)
                      .+.++++|+++++.+.+.  ++++.+++|++|++++|.+++..  .+.++++|++|++++|.+.. . ..+.++++|+.|
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-I-TPLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccccc-c-cccccccccccc
Confidence            456677777777766642  34667777777777777766332  26677777777777776652 2 246677777777


Q ss_pred             EccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEE
Q 040195          140 ALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC  219 (472)
Q Consensus       140 ~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~  219 (472)
                      +++++....  ...+..+++|+.+++++|.+..  ...+..+++|+.|++.+|.+.++.         .+..+++|++|+
T Consensus       112 ~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l~---------~l~~l~~L~~L~  178 (199)
T d2omxa2         112 TLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLK---------PLANLTTLERLD  178 (199)
T ss_dssp             ECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCG---------GGTTCTTCCEEE
T ss_pred             ccccccccc--ccccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCCc---------cccCCCCCCEEE
Confidence            777776653  2345667777777777777652  334667777777777777764432         244677777888


Q ss_pred             cccccccccCCccCcCCCCCCEE
Q 040195          220 IAENNFVGSIPDSLSNASNLELL  242 (472)
Q Consensus       220 l~~~~l~~~~~~~l~~~~~L~~L  242 (472)
                      +++|++++.  ..++.+++|++|
T Consensus       179 ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         179 ISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEE
T ss_pred             CCCCCCCCC--ccccCCCCCCcC
Confidence            877777642  246677777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=4e-15  Score=127.05  Aligned_cols=166  Identities=25%  Similarity=0.346  Sum_probs=122.7

Q ss_pred             CCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEE
Q 040195           60 NLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTL  139 (472)
Q Consensus        60 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  139 (472)
                      .+.+|++|+++++.+...  .++..+++|++|++++|.+.+. + .+..+++|++|++++|+++. ++ .+..+++|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccc
Confidence            466788888888877643  2477888888888888887743 2 36778888888888888873 33 57778888888


Q ss_pred             EccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEE
Q 040195          140 ALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC  219 (472)
Q Consensus       140 ~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~  219 (472)
                      ++.++.+..  ...+..++.++.+++++|.+++  ...+..+++|+++++++|.+.++.         .+..+++|++|+
T Consensus       118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~---------~l~~l~~L~~L~  184 (210)
T d1h6ta2         118 SLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV---------PLAGLTKLQNLY  184 (210)
T ss_dssp             ECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG---------GGTTCTTCCEEE
T ss_pred             ccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccccc---------cccCCCCCCEEE
Confidence            888887753  2356778888888888888763  345667888888888888874432         145778888888


Q ss_pred             cccccccccCCccCcCCCCCCEEecCC
Q 040195          220 IAENNFVGSIPDSLSNASNLELLELAG  246 (472)
Q Consensus       220 l~~~~l~~~~~~~l~~~~~L~~L~l~~  246 (472)
                      +++|.+++. + .+.++++|+.|++++
T Consensus       185 Ls~N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         185 LSKNHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             CCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence            888888743 3 478888898888753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=4.6e-15  Score=125.59  Aligned_cols=179  Identities=21%  Similarity=0.289  Sum_probs=132.5

Q ss_pred             cEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEcccc
Q 040195           65 RYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYN  144 (472)
Q Consensus        65 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  144 (472)
                      ....+..+.+.+..  ....++++++|+++++.+.+.  ..+..+++|++|++++|.++..  ..+.++++|++|++++|
T Consensus        21 i~~~l~~~~~~~~~--~~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~--~~l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          21 MKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred             HHHHhCCCCCCCcc--CHHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCc--ccccCCccccccccccc
Confidence            34455555555332  235678889999999888743  3577888999999999988743  24888899999999988


Q ss_pred             CCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccc
Q 040195          145 NLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENN  224 (472)
Q Consensus       145 ~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (472)
                      .+.. .+ .+..+++|+.++++++....  ...+..+++|+.|++++|.+..++         .+..+++|+.|++.+|.
T Consensus        95 ~~~~-~~-~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~---------~l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2          95 QIAD-IT-PLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDIS---------ALSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             CCCC-CG-GGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCG---------GGTTCTTCSEEECCSSC
T ss_pred             cccc-cc-cccccccccccccccccccc--ccccchhhhhHHhhhhhhhhcccc---------ccccccccccccccccc
Confidence            8763 33 47788899999998887753  345677889999999988774432         24577889999999988


Q ss_pred             ccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeE
Q 040195          225 FVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVL  266 (472)
Q Consensus       225 l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  266 (472)
                      +++.  ..++++++|++|++++|++++.  ..++.+++|++|
T Consensus       162 l~~l--~~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         162 VTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             ccCC--ccccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            8753  2378889999999999988753  357788888775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=8.6e-16  Score=129.36  Aligned_cols=155  Identities=17%  Similarity=0.162  Sum_probs=127.3

Q ss_pred             cccccEEEeecccccC-cccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCee
Q 040195          303 SSTMTHFYIGGNQILG-IIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANL  381 (472)
Q Consensus       303 ~~~l~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L  381 (472)
                      ++.+++|++++|.++. .....|..+++|++|++++|.+....+..+..+++|++|++++|++....+.+|.++++|++|
T Consensus        28 p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccc
Confidence            3589999999999986 556778999999999999999998888899999999999999999998788889999999999


Q ss_pred             eccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCee
Q 040195          382 ELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQF  461 (472)
Q Consensus       382 ~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~  461 (472)
                      +|++|+++...+.++..+++|++|++++|++.. ......-...++ .+.+..+.++...|..   ++.++.++|+.|.+
T Consensus       108 ~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~-~~~~~~~~~~l~-~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l  182 (192)
T d1w8aa_         108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC-NCHLAWFAEWLR-KKSLNGGAARCGAPSK---VRDVQIKDLPHSEF  182 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC-SGGGHHHHHHHH-HHCCSGGGCBBCSSTT---TTTSBGGGSCTTTC
T ss_pred             ccCCccccccCHHHhcCCccccccccccccccc-ccchHHHhhhhh-hhcccCCCeEeCCChh---hcCCEeeecCHhhC
Confidence            999999997778889999999999999999873 222211122244 5667777777555544   45777888998887


Q ss_pred             c
Q 040195          462 S  462 (472)
Q Consensus       462 ~  462 (472)
                      .
T Consensus       183 ~  183 (192)
T d1w8aa_         183 K  183 (192)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.8e-16  Score=140.15  Aligned_cols=61  Identities=20%  Similarity=0.217  Sum_probs=30.3

Q ss_pred             CCCCCcEEEcccCcCccc-CCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCC
Q 040195          108 RCSELTHLRVANNKLEGQ-IPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGN  168 (472)
Q Consensus       108 ~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~  168 (472)
                      ...+|++|++++|.+... +...+.++++|++|+++++.+.+..+..+..+++|++|++++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence            334556666665554322 1223445555555555555554444444445555555555553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=1.4e-14  Score=121.83  Aligned_cols=160  Identities=18%  Similarity=0.191  Sum_probs=121.2

Q ss_pred             cccEEEeecccccCcccccccCccCcceEecccccccc-CcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195          305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHG-TIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL  383 (472)
Q Consensus       305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  383 (472)
                      ..+.++.+++.++.++. .+.  +++++|+|++|.|.. ..+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus         9 ~~~~v~Cs~~~L~~iP~-~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             ETTEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEEeCCCcCccCC-CCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            34678888888886543 332  678999999999975 34557788899999999999998778888888999999999


Q ss_pred             cCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195          384 SSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG  463 (472)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~  463 (472)
                      ++|+++...+.+|..+++|++|++++|.++...+..|..+++++ .|+|++|.+..... ...-...++.+.+..+.++-
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~-~l~L~~N~~~~~~~-~~~~~~~l~~~~l~~~~~~c  163 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT-SLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARC  163 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC-EEECTTCCBCCSGG-GHHHHHHHHHHCCSGGGCBB
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccc-cccccccccccccc-hHHHhhhhhhhcccCCCeEe
Confidence            99999877777888899999999999999855566788888888 99999998864322 11112346666677777665


Q ss_pred             ccCCcc
Q 040195          464 VIPVTL  469 (472)
Q Consensus       464 ~~p~~~  469 (472)
                      ..|..+
T Consensus       164 ~~p~~l  169 (192)
T d1w8aa_         164 GAPSKV  169 (192)
T ss_dssp             CSSTTT
T ss_pred             CCChhh
Confidence            666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.54  E-value=1.5e-15  Score=140.67  Aligned_cols=255  Identities=16%  Similarity=0.169  Sum_probs=137.3

Q ss_pred             cccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccccccc----------CCccCcCCCCCCEEe
Q 040195          174 IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGS----------IPDSLSNASNLELLE  243 (472)
Q Consensus       174 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----------~~~~l~~~~~L~~L~  243 (472)
                      +...+.....++.|++++|.+.+.+.   ......+...++|+.++++++.....          +...+..+++|+.|+
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~---~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~   99 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAA---RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR   99 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHH---HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHH---HHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc
Confidence            34456677889999999887644321   11123345667888888876643211          122345667788888


Q ss_pred             cCCCcccccccc----cccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCc
Q 040195          244 LAGNQFEGKVSI----DFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGI  319 (472)
Q Consensus       244 l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~  319 (472)
                      +++|.++.....    .+...++|++|++++|.++..+...+.  .            .+...                .
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~--~------------~l~~~----------------~  149 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--R------------ALQEL----------------A  149 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--H------------HHHHH----------------H
T ss_pred             ccccccccccccchhhhhcccccchheeccccccccccccccc--c------------ccccc----------------c
Confidence            888877654332    234567788888877766421111000  0            00000                0


Q ss_pred             ccccccCccCcceEeccccccccCc----chhhcCCCCCcEEEccCCcCccc-----cccchhcccccCeeeccCCcccc
Q 040195          320 IHFGIRNLVNLIALGMQSNQLHGTI----PDVIGELKNLQILSLFGNFLHGS-----IPSSLGNLTKLANLELSSNSLQG  390 (472)
Q Consensus       320 ~~~~l~~~~~L~~L~l~~~~i~~~~----~~~~~~~~~L~~L~L~~n~l~~~-----~~~~l~~~~~L~~L~l~~~~~~~  390 (472)
                      ........+.|+.++++++.+....    ..++..++.|++|++++|.+...     +...+..+++|+.|++++|+++.
T Consensus       150 ~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~  229 (344)
T d2ca6a1         150 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH  229 (344)
T ss_dssp             HHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred             cccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccc
Confidence            0001123345555666655554322    22344456666666666666432     23345556667777777766653


Q ss_pred             c----CCcCccCCCCCceEeecCCcccccCChhh----hh--hcccceEEEcCCCcccccc----ccccc-CCCCCceEe
Q 040195          391 N----IPLSVGNCQNLIGFDASHITLTGALPQQL----LS--ITTLSLYLDLSHNLLNGSL----LLQVG-NLKNLILLD  455 (472)
Q Consensus       391 ~----~~~~~~~~~~L~~L~ls~~~~~~~~~~~l----~~--~~~l~~~L~ls~n~l~~~~----~~~l~-~~~~L~~L~  455 (472)
                      .    +...+..++.|++|++++|.+.+.....+    ..  .+.++ .|++++|++++..    ...+. ++++|+.|+
T Consensus       230 ~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~-~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~  308 (344)
T d2ca6a1         230 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ-TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  308 (344)
T ss_dssp             HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC-EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             cccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCC-EEECCCCcCChHHHHHHHHHHHccCCCCCEEE
Confidence            2    33345566777777777776653322222    22  23455 7777777766432    23332 456777777


Q ss_pred             ccCCeec
Q 040195          456 ISGNQFS  462 (472)
Q Consensus       456 L~~n~~~  462 (472)
                      |++|.+.
T Consensus       309 l~~N~~~  315 (344)
T d2ca6a1         309 LNGNRFS  315 (344)
T ss_dssp             CTTSBSC
T ss_pred             CCCCcCC
Confidence            7777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=4.5e-15  Score=137.34  Aligned_cols=236  Identities=23%  Similarity=0.234  Sum_probs=169.6

Q ss_pred             CCceEEEECCCCccCcc----cCccccCCCCccEEeccCCcCccC----------cchhhhcCCCCCEEEccCcccCCCC
Q 040195           37 HQRVTELDLSNQRIGGV----LSPYVGNLSFLRYINLSDNGFHGE----------IPQEIGNLYRLEKLELSNNSFSGTI  102 (472)
Q Consensus        37 ~~~l~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~~~~~~~----------~~~~~~~l~~L~~L~L~~~~~~~~~  102 (472)
                      ...+++|++++|.+...    +...+...++|+.++++++.....          +.+++..+++|++|++++|.+....
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            36789999999988654    344567889999999997754321          2234566899999999999887542


Q ss_pred             ----CcccCCCCCCcEEEcccCcCcccCCcc-------------ccCCCCCcEEEccccCCCCCCC----ccccCCCCcc
Q 040195          103 ----PTNLSRCSELTHLRVANNKLEGQIPKE-------------IGSLLKLQTLALYYNNLTGQLP----DFVGNLSALQ  161 (472)
Q Consensus       103 ----~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------l~~l~~L~~L~l~~~~i~~~~~----~~l~~~~~L~  161 (472)
                          ...+..++.|++|++++|.+.......             ....+.|+.+.++++.+.....    ..+...+.|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence                233456799999999999875321111             1346789999999998864333    3345678999


Q ss_pred             EEEecCCccccc-----cccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCC----cc
Q 040195          162 VIYIRGNSLGGK-----IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIP----DS  232 (472)
Q Consensus       162 ~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~  232 (472)
                      ++++++|.++..     ....+..+++|++|++++|.+.+.+.   ......+..+++|++|++++|.+.+...    ..
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~---~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~  266 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS---SALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  266 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH---HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhhhcchhhhccccccccccccccc---ccccccccccccchhhhhhcCccCchhhHHHHHH
Confidence            999999988642     23456778999999999998754321   1122446678999999999999875322    22


Q ss_pred             Cc--CCCCCCEEecCCCccccccccc----c-cccCCCCeEEcCCCcCCC
Q 040195          233 LS--NASNLELLELAGNQFEGKVSID----F-SSLKNLAVLNLERNNLGI  275 (472)
Q Consensus       233 l~--~~~~L~~L~l~~~~~~~~~~~~----l-~~l~~L~~L~l~~~~~~~  275 (472)
                      +.  ..+.|++|++++|.++......    + .++++|++|++++|++..
T Consensus       267 l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         267 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            32  3478999999999987654333    3 257899999999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.3e-14  Score=116.27  Aligned_cols=127  Identities=17%  Similarity=0.192  Sum_probs=87.7

Q ss_pred             ccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCc
Q 040195          324 IRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLI  403 (472)
Q Consensus       324 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  403 (472)
                      +.+..++++|++++|.|.. ++..+..+++|+.|++++|.+.. + +.+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            4456677788888887773 34555667778888888887763 3 3467778888888888887744444456678888


Q ss_pred             eEeecCCcccccCC--hhhhhhcccceEEEcCCCcccccc---cccccCCCCCceEe
Q 040195          404 GFDASHITLTGALP--QQLLSITTLSLYLDLSHNLLNGSL---LLQVGNLKNLILLD  455 (472)
Q Consensus       404 ~L~ls~~~~~~~~~--~~l~~~~~l~~~L~ls~n~l~~~~---~~~l~~~~~L~~L~  455 (472)
                      .|++++|.+. .++  ..+..+++|+ .|++++|+++...   +..+..+++|+.||
T Consensus        91 ~L~L~~N~i~-~~~~l~~l~~l~~L~-~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLV-ELGDLDPLASLKSLT-YLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCC-EEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceecccccc-ccccccccccccccc-hhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            8888888776 233  3566777887 8888888776432   13467778888776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=7.8e-14  Score=113.13  Aligned_cols=111  Identities=20%  Similarity=0.133  Sum_probs=60.1

Q ss_pred             ccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCc
Q 040195           58 VGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQ  137 (472)
Q Consensus        58 l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  137 (472)
                      +.+...+|+|+|++|.++.+ +..+..+++|+.|++++|.+...  ..+..+++|++|++++|.++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            34455566666666666533 44445566666666666665522  2355566666666666666533333344556666


Q ss_pred             EEEccccCCCCCCC-ccccCCCCccEEEecCCccc
Q 040195          138 TLALYYNNLTGQLP-DFVGNLSALQVIYIRGNSLG  171 (472)
Q Consensus       138 ~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~~~~~~  171 (472)
                      +|++++|.+.+... ..+..+++|+++++++|.++
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc
Confidence            66666665552211 23445555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=3.5e-13  Score=103.76  Aligned_cols=78  Identities=27%  Similarity=0.417  Sum_probs=35.7

Q ss_pred             cEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEcccc
Q 040195           65 RYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYN  144 (472)
Q Consensus        65 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  144 (472)
                      |+|++++|.++.. + .+.++++|++|++++|.+. .+|..+..+++|++|++++|.++. . ..+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V-DGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C-GGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-c-CccccccccCeEECCCC
Confidence            3455555555422 2 2444555555555555544 333344445555555555554442 1 22444444444444444


Q ss_pred             CCC
Q 040195          145 NLT  147 (472)
Q Consensus       145 ~i~  147 (472)
                      .+.
T Consensus        76 ~i~   78 (124)
T d1dcea3          76 RLQ   78 (124)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=9.5e-13  Score=101.27  Aligned_cols=104  Identities=26%  Similarity=0.325  Sum_probs=56.9

Q ss_pred             CEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCC
Q 040195           89 EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGN  168 (472)
Q Consensus        89 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~  168 (472)
                      |.|++++|+++ ..+ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ ++ .+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            35566666655 222 3555566666666666665 344455556666666666666652 22 3555666666666666


Q ss_pred             cccccc-ccccccCCCccEEEccCCccccc
Q 040195          169 SLGGKI-PTTLGLLRNLVYLNVNENQFWYV  197 (472)
Q Consensus       169 ~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~  197 (472)
                      +++... ...+..+++|+.|++++|++...
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            555321 23455556666666666655433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=2.2e-13  Score=114.47  Aligned_cols=132  Identities=24%  Similarity=0.246  Sum_probs=82.1

Q ss_pred             ccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCC
Q 040195          322 FGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQN  401 (472)
Q Consensus       322 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  401 (472)
                      ..+..+++|++|++++|.|... + .+..+++|++|++++|.++ .++.....++.|++|++++|+++. + ..+..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHH
T ss_pred             hHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccccc
Confidence            3456667777777777777633 2 3566677777777777766 344444445667777777777663 2 23556677


Q ss_pred             CceEeecCCcccccCC--hhhhhhcccceEEEcCCCcccccccc----------cccCCCCCceEeccCCeec
Q 040195          402 LIGFDASHITLTGALP--QQLLSITTLSLYLDLSHNLLNGSLLL----------QVGNLKNLILLDISGNQFS  462 (472)
Q Consensus       402 L~~L~ls~~~~~~~~~--~~l~~~~~l~~~L~ls~n~l~~~~~~----------~l~~~~~L~~L~L~~n~~~  462 (472)
                      |+.|++++|.+++ ++  ..+..+++|+ .|++++|++....+.          .+..+++|+.||  +.+++
T Consensus       117 L~~L~L~~N~i~~-~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         117 LRVLYMSNNKITN-WGEIDKLAALDKLE-DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCC-HHHHHHHTTTTTCS-EEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             ccccccccchhcc-ccccccccCCCccc-eeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            7777777777762 32  3466677777 777777776543222          145677888765  44443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=6.2e-13  Score=111.64  Aligned_cols=119  Identities=21%  Similarity=0.182  Sum_probs=98.6

Q ss_pred             CcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhh
Q 040195          343 TIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLS  422 (472)
Q Consensus       343 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~  422 (472)
                      ..+..+..+++|++|++++|+++. ++ .+..+++|++|++++|.++ .++.....+++|++|++++|.++ .+ ..+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l-~~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CH-HHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-cc-ccccc
Confidence            344568889999999999999984 33 5889999999999999998 56655556678999999999998 34 45888


Q ss_pred             hcccceEEEcCCCccccccc-ccccCCCCCceEeccCCeeccccCC
Q 040195          423 ITTLSLYLDLSHNLLNGSLL-LQVGNLKNLILLDISGNQFSGVIPV  467 (472)
Q Consensus       423 ~~~l~~~L~ls~n~l~~~~~-~~l~~~~~L~~L~L~~n~~~~~~p~  467 (472)
                      +++++ .|++++|++++... ..+..+++|+.|+|++|++....+.
T Consensus       114 l~~L~-~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         114 LVNLR-VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHSS-EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             ccccc-ccccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            99999 99999999986432 5688999999999999998765543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=9.1e-11  Score=94.00  Aligned_cols=106  Identities=18%  Similarity=0.136  Sum_probs=75.1

Q ss_pred             ccEEEeecccccCcccccccCccCcceEecccc-ccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195          306 MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSN-QLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS  384 (472)
Q Consensus       306 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  384 (472)
                      .+.++.++..+... +..+..+++|++|+++++ .+....+.+|..+++|+.|++++|+++...+.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            34466666665543 344667778888888665 4775656677788888888888888876667778888888888888


Q ss_pred             CCcccccCCcCccCCCCCceEeecCCccc
Q 040195          385 SNSLQGNIPLSVGNCQNLIGFDASHITLT  413 (472)
Q Consensus       385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~  413 (472)
                      +|+++ .++.......+|+.|++++|++.
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCc-ccChhhhccccccccccCCCccc
Confidence            88887 44444444456888888888775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-10  Score=93.10  Aligned_cols=109  Identities=20%  Similarity=0.096  Sum_probs=89.6

Q ss_pred             ccCcceEeccccccccCcchhhcCCCCCcEEEccCCc-CccccccchhcccccCeeeccCCcccccCCcCccCCCCCceE
Q 040195          327 LVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNF-LHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGF  405 (472)
Q Consensus       327 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  405 (472)
                      +...+.++.+++.+. ..|..+..+++|++|++++++ ++...+.+|..+++|+.|++++|+++...+.++..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            344566788888777 456667888999999998764 776667788999999999999999997777889999999999


Q ss_pred             eecCCcccccCChhhhhhcccceEEEcCCCccc
Q 040195          406 DASHITLTGALPQQLLSITTLSLYLDLSHNLLN  438 (472)
Q Consensus       406 ~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~  438 (472)
                      ++++|++. .++........++ .|+|++|++.
T Consensus        86 ~Ls~N~l~-~l~~~~~~~~~l~-~L~L~~Np~~  116 (156)
T d2ifga3          86 NLSFNALE-SLSWKTVQGLSLQ-ELVLSGNPLH  116 (156)
T ss_dssp             ECCSSCCS-CCCSTTTCSCCCC-EEECCSSCCC
T ss_pred             eccCCCCc-ccChhhhcccccc-ccccCCCccc
Confidence            99999998 6776666666788 9999999875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.6e-08  Score=81.15  Aligned_cols=87  Identities=24%  Similarity=0.216  Sum_probs=53.2

Q ss_pred             chhcccccCeeeccCCccccc--CCcCccCCCCCceEeecCCcccccCCh-hhhhhcccceEEEcCCCccccccc-----
Q 040195          371 SLGNLTKLANLELSSNSLQGN--IPLSVGNCQNLIGFDASHITLTGALPQ-QLLSITTLSLYLDLSHNLLNGSLL-----  442 (472)
Q Consensus       371 ~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ls~~~~~~~~~~-~l~~~~~l~~~L~ls~n~l~~~~~-----  442 (472)
                      ....+++|++|++++|+++..  ++..+..+++|+.|++++|.+.+ ++. .......++ .|++++|++.....     
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~-~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLE-ELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCS-SCCCTTSTTSSSSSSHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccc-eeecCCCCcCcCcccchhH
Confidence            334567777777777777632  22335567777777777777763 322 333445566 78888887764322     


Q ss_pred             --ccccCCCCCceEeccCCee
Q 040195          443 --LQVGNLKNLILLDISGNQF  461 (472)
Q Consensus       443 --~~l~~~~~L~~L~L~~n~~  461 (472)
                        ..+..+|+|+.||  |..+
T Consensus       138 ~~~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         138 ISAIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHHHHTTSTTCCEET--TEEC
T ss_pred             HHHHHHHCCCCCEEC--cCCC
Confidence              2356778888775  4444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.07  E-value=1.1e-06  Score=70.50  Aligned_cols=110  Identities=15%  Similarity=0.146  Sum_probs=59.5

Q ss_pred             CccCcceEecccc-ccccC----cchhhcCCCCCcEEEccCCcCccc----cccchhcccccCeeeccCCccccc----C
Q 040195          326 NLVNLIALGMQSN-QLHGT----IPDVIGELKNLQILSLFGNFLHGS----IPSSLGNLTKLANLELSSNSLQGN----I  392 (472)
Q Consensus       326 ~~~~L~~L~l~~~-~i~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~  392 (472)
                      +.++|++|+|+++ .+...    +..++...+.|++|+|++|.+.+.    +.+.+...+.|++|++++|.++..    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3466666666653 34332    223455566777777777766533    223344556677777777766632    2


Q ss_pred             CcCccCCCCCceEeecCCcccc-------cCChhhhhhcccceEEEcCCCc
Q 040195          393 PLSVGNCQNLIGFDASHITLTG-------ALPQQLLSITTLSLYLDLSHNL  436 (472)
Q Consensus       393 ~~~~~~~~~L~~L~ls~~~~~~-------~~~~~l~~~~~l~~~L~ls~n~  436 (472)
                      ..++...++|++|++++|.+..       .+...+...++++ .|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~-~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLL-RVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCC-EEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCcc-EeeCcCCC
Confidence            2344555666666666654321       1233444455555 56665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.06  E-value=9.3e-07  Score=70.94  Aligned_cols=113  Identities=10%  Similarity=0.122  Sum_probs=84.4

Q ss_pred             hcCCCCCcEEEccCC-cCccc----cccchhcccccCeeeccCCccccc----CCcCccCCCCCceEeecCCccccc---
Q 040195          348 IGELKNLQILSLFGN-FLHGS----IPSSLGNLTKLANLELSSNSLQGN----IPLSVGNCQNLIGFDASHITLTGA---  415 (472)
Q Consensus       348 ~~~~~~L~~L~L~~n-~l~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~~~~~---  415 (472)
                      ..+.+.|++|+|+++ .+...    +..++...+.|++|++++|.+...    +...+...++|+.|++++|.+.+.   
T Consensus        11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            345799999999985 46543    344667788999999999998843    233455689999999999999742   


Q ss_pred             -CChhhhhhcccceEEEcCCCcccc-------cccccccCCCCCceEeccCCee
Q 040195          416 -LPQQLLSITTLSLYLDLSHNLLNG-------SLLLQVGNLKNLILLDISGNQF  461 (472)
Q Consensus       416 -~~~~l~~~~~l~~~L~ls~n~l~~-------~~~~~l~~~~~L~~L~L~~n~~  461 (472)
                       +...+...++++ +|++++|.+..       .+...+...++|+.|+++.+..
T Consensus        91 ~l~~aL~~n~sL~-~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          91 RLLRSTLVTQSIV-EFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHTTTTCCCS-EEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHhCCcCC-EEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence             334566678898 99999886542       2446666779999999987753

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=3.1e-07  Score=73.47  Aligned_cols=68  Identities=22%  Similarity=0.152  Sum_probs=40.2

Q ss_pred             hhcCCCCCcEEEccCCcCccc--cccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccc
Q 040195          347 VIGELKNLQILSLFGNFLHGS--IPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTG  414 (472)
Q Consensus       347 ~~~~~~~L~~L~L~~n~l~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~  414 (472)
                      .+..++.|++|++++|+++..  ++..+..+++|+.|++++|.+...-.........|+.+++++|++..
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            344566777777777776643  23445566777777777777663222122334457777777777653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.75  E-value=2.2e-06  Score=68.64  Aligned_cols=65  Identities=14%  Similarity=0.175  Sum_probs=34.4

Q ss_pred             cCccCcceEecccc-ccccC----cchhhcCCCCCcEEEccCCcCccc----cccchhcccccCeeeccCCccc
Q 040195          325 RNLVNLIALGMQSN-QLHGT----IPDVIGELKNLQILSLFGNFLHGS----IPSSLGNLTKLANLELSSNSLQ  389 (472)
Q Consensus       325 ~~~~~L~~L~l~~~-~i~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~~~~~  389 (472)
                      .+.++|++|+++++ .+...    +..++...+.|++|++++|.+.+.    +...+...+.++.+++++|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            34566666666653 34332    223344556666666666665433    2223344455666666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.69  E-value=5.3e-06  Score=66.37  Aligned_cols=111  Identities=14%  Similarity=0.109  Sum_probs=57.1

Q ss_pred             cCCCCCcEEEccC-CcCccc----cccchhcccccCeeeccCCccccc----CCcCccCCCCCceEeecCCccccc----
Q 040195          349 GELKNLQILSLFG-NFLHGS----IPSSLGNLTKLANLELSSNSLQGN----IPLSVGNCQNLIGFDASHITLTGA----  415 (472)
Q Consensus       349 ~~~~~L~~L~L~~-n~l~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~~~~~----  415 (472)
                      .+.+.|++|++++ +.++..    +..++...+.|++|++++|.++..    +...+...++++.+++++|.+.+.    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4456666666665 334322    223344556666666666665532    222344456666666666665421    


Q ss_pred             CChhhhhhcccceEEEc--CCCcccc----cccccccCCCCCceEeccCCe
Q 040195          416 LPQQLLSITTLSLYLDL--SHNLLNG----SLLLQVGNLKNLILLDISGNQ  460 (472)
Q Consensus       416 ~~~~l~~~~~l~~~L~l--s~n~l~~----~~~~~l~~~~~L~~L~L~~n~  460 (472)
                      +...+...+.++ .++|  ++|++++    .+...+...+.|+.|+++.+.
T Consensus        94 l~~~l~~~~~L~-~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLI-ELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCC-EEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCcccc-EEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            223444455555 4333  3455543    233444556666666666554