Citrus Sinensis ID: 040196


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80---
MPKVKTNRVQNPEGWELIEPTLRELQKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNFQMHECAECLRT
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHccccccccccccEEEEEccc
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccEEEEEEEEcccccccccccccHEEcc
mpkvktnrvqnpegweliEPTLRELQKEISMELYEFCLDQGYAVRNLIakgkqpgyerlcclrcmqphdhnfqmHECAECLRT
mpkvktnrvqnpegweliepTLRELQKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNFQMHECAECLRT
MPKVKTNRVQNPEGWELIEPTLRELQKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNFQMHECAECLRT
**************WELIEPTLRELQKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNFQMHECA*****
************EGWELIEPTLRELQKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNFQMHECAECLRT
*********QNPEGWELIEPTLRELQKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNFQMHECAECLRT
*******RVQNPEGWELIEPTLRELQKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNFQMHECAECLRT
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MPKVKTNRVQNPEGWELIEPTLRELQKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNFQMHECAECLRT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query83 2.2.26 [Sep-21-2011]
Q94DE2145 Protein BUD31 homolog 1 O yes no 0.867 0.496 0.513 5e-23
Q65WT0145 Protein BUD31 homolog 2 O no no 0.867 0.496 0.504 1e-22
P35682145 Protein BUD31 homolog 3 O no no 0.867 0.496 0.486 2e-20
Q6PGH1103 Protein BUD31 homolog OS= yes no 0.903 0.728 0.6 3e-20
O70454144 Protein BUD31 homolog OS= yes no 0.867 0.5 0.424 1e-15
P41223144 Protein BUD31 homolog OS= yes no 0.867 0.5 0.424 1e-15
Q2NKU3144 Protein BUD31 homolog OS= yes no 0.867 0.5 0.424 1e-15
P12805144 Protein BUD31 homolog OS= N/A no 0.867 0.5 0.415 4e-15
Q962X9144 Protein BUD31 homolog OS= N/A no 0.867 0.5 0.424 7e-15
Q567Z7144 Protein BUD31 homolog OS= yes no 0.867 0.5 0.407 2e-14
>sp|Q94DE2|BD31A_ORYSJ Protein BUD31 homolog 1 OS=Oryza sativa subsp. japonica GN=Os01g0857700 PE=2 SV=1 Back     alignment and function desciption
 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 65/113 (57%), Gaps = 41/113 (36%)

Query: 1   MPKVKTNRVQNPEGWELIEPTLREL----------------------------------- 25
           MPK+KT+RV+ P GWELIEPT+REL                                   
Sbjct: 1   MPKIKTSRVKYPGGWELIEPTIRELDAKMREAENDTHDGKRKCEALWPIFRISHQRSRYI 60

Query: 26  ------QKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
                 +KEIS ELYEFCLDQGYA RNLIAK K+PGYERLCCLRC+Q  DHNF
Sbjct: 61  YDLYYRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQTRDHNF 113





Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q65WT0|BD31B_ORYSJ Protein BUD31 homolog 2 OS=Oryza sativa subsp. japonica GN=Os05g0446300 PE=2 SV=1 Back     alignment and function description
>sp|P35682|BD31C_ORYSJ Protein BUD31 homolog 3 OS=Oryza sativa subsp. japonica GN=Os12g0149800 PE=2 SV=2 Back     alignment and function description
>sp|Q6PGH1|BUD31_MOUSE Protein BUD31 homolog OS=Mus musculus GN=Bud31 PE=2 SV=1 Back     alignment and function description
>sp|O70454|BUD31_RAT Protein BUD31 homolog OS=Rattus norvegicus GN=Bud31 PE=2 SV=2 Back     alignment and function description
>sp|P41223|BUD31_HUMAN Protein BUD31 homolog OS=Homo sapiens GN=BUD31 PE=1 SV=2 Back     alignment and function description
>sp|Q2NKU3|BUD31_BOVIN Protein BUD31 homolog OS=Bos taurus GN=BUD31 PE=2 SV=1 Back     alignment and function description
>sp|P12805|BUD31_XENLA Protein BUD31 homolog OS=Xenopus laevis GN=bud31 PE=2 SV=1 Back     alignment and function description
>sp|Q962X9|BUD31_BRABE Protein BUD31 homolog OS=Branchiostoma belcheri PE=2 SV=1 Back     alignment and function description
>sp|Q567Z7|BUD31_DANRE Protein BUD31 homolog OS=Danio rerio GN=bud31 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query83
351727539145 uncharacterized protein LOC100305597 [Gl 0.867 0.496 0.575 2e-24
357518649145 BUD31-like protein [Medicago truncatula] 0.867 0.496 0.575 2e-24
255586760145 Protein G10, putative [Ricinus communis] 0.867 0.496 0.575 2e-24
297736877177 unnamed protein product [Vitis vinifera] 0.867 0.406 0.566 3e-24
225432314145 PREDICTED: protein BUD31 homolog 2 [Viti 0.867 0.496 0.566 4e-24
449451114145 PREDICTED: protein BUD31 homolog 2-like 0.867 0.496 0.557 6e-24
388490494145 unknown [Lotus japonicus] 0.867 0.496 0.557 1e-23
116781670145 unknown [Picea sitchensis] 0.867 0.496 0.530 7e-23
224105027142 predicted protein [Populus trichocarpa] 0.867 0.507 0.530 3e-22
192911938145 G10 protein [Elaeis guineensis] 0.867 0.496 0.530 5e-22
>gi|351727539|ref|NP_001237676.1| uncharacterized protein LOC100305597 [Glycine max] gi|356512435|ref|XP_003524924.1| PREDICTED: protein BUD31 homolog 2-like [Glycine max] gi|255626029|gb|ACU13359.1| unknown [Glycine max] Back     alignment and taxonomy information
 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 67/113 (59%), Gaps = 41/113 (36%)

Query: 1   MPKVKTNRVQNPEGWELIEPTLRELQ---------------------------------- 26
           MPKVKTNRV+ PEGWELIEPTLRELQ                                  
Sbjct: 1   MPKVKTNRVKYPEGWELIEPTLRELQAKMREAENDPHDGKRKCETLWPIFKIAHQKSRYI 60

Query: 27  -------KEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
                  KEIS ELYEFCLDQGYA RNLIAK K+PGYERLCCLRCMQP DHNF
Sbjct: 61  FDLYHRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCMQPRDHNF 113




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518649|ref|XP_003629613.1| BUD31-like protein [Medicago truncatula] gi|355523635|gb|AET04089.1| BUD31-like protein [Medicago truncatula] gi|388508458|gb|AFK42295.1| unknown [Medicago truncatula] gi|388514395|gb|AFK45259.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255586760|ref|XP_002533999.1| Protein G10, putative [Ricinus communis] gi|223526001|gb|EEF28380.1| Protein G10, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297736877|emb|CBI26078.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225432314|ref|XP_002273849.1| PREDICTED: protein BUD31 homolog 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449451114|ref|XP_004143307.1| PREDICTED: protein BUD31 homolog 2-like [Cucumis sativus] gi|449511850|ref|XP_004164071.1| PREDICTED: protein BUD31 homolog 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388490494|gb|AFK33313.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|116781670|gb|ABK22196.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|224105027|ref|XP_002313660.1| predicted protein [Populus trichocarpa] gi|222850068|gb|EEE87615.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|192911938|gb|ACF06577.1| G10 protein [Elaeis guineensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query83
TAIR|locus:2127383145 AT4G21110 [Arabidopsis thalian 0.566 0.324 0.765 6.6e-28
UNIPROTKB|E1BV47144 BUD31 "Uncharacterized protein 0.566 0.326 0.638 2e-21
UNIPROTKB|Q2NKU3144 BUD31 "Protein BUD31 homolog" 0.566 0.326 0.638 2e-21
UNIPROTKB|E2RMW3144 BUD31 "Uncharacterized protein 0.566 0.326 0.638 2e-21
UNIPROTKB|P41223144 BUD31 "Protein BUD31 homolog" 0.566 0.326 0.638 2e-21
RGD|621103144 Bud31 "BUD31 homolog (S. cerev 0.566 0.326 0.638 2e-21
UNIPROTKB|C9JCD9103 BUD31 "Protein BUD31 homolog" 0.867 0.699 0.625 2.4e-21
UNIPROTKB|J9PBT8103 BUD31 "Uncharacterized protein 0.867 0.699 0.625 2.4e-21
MGI|MGI:2141291103 Bud31 "BUD31 homolog (yeast)" 0.867 0.699 0.625 2.4e-21
UNIPROTKB|J9PBG0103 J9PBG0 "Uncharacterized protei 0.903 0.728 0.586 6.3e-21
TAIR|locus:2127383 AT4G21110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 204 (76.9 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 36/47 (76%), Positives = 42/47 (89%)

Query:    26 QKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
             ++EIS ELYEFCLDQGYA R+LIAK K+ GYERLCCLRC+QP DHN+
Sbjct:    67 REEISKELYEFCLDQGYADRSLIAKWKKSGYERLCCLRCIQPRDHNY 113


GO:0005634 "nucleus" evidence=ISM;IEA;ISS
GO:0008150 "biological_process" evidence=ND
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|E1BV47 BUD31 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q2NKU3 BUD31 "Protein BUD31 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMW3 BUD31 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P41223 BUD31 "Protein BUD31 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|621103 Bud31 "BUD31 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|C9JCD9 BUD31 "Protein BUD31 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9PBT8 BUD31 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2141291 Bud31 "BUD31 homolog (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9PBG0 J9PBG0 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6PGH1BUD31_MOUSENo assigned EC number0.60.90360.7281yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00019780001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (145 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00038875001
SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (110 aa)
     0.813
GSVIVG00002461001
SubName- Full=Putative uncharacterized protein (Chromosome chr2 scaffold_132, whole genome shot [...] (703 aa)
     0.804
GSVIVG00028826001
SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (563 aa)
     0.747
GSVIVG00016680001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (570 aa)
     0.721
GSVIVG00024168001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (465 aa)
     0.646
GSVIVG00002219001
SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (1012 aa)
     0.618
GSVIVG00000309001
SubName- Full=Chromosome chr9 scaffold_104, whole genome shotgun sequence; (1279 aa)
       0.548
GSVIVG00023663001
SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (97 aa)
      0.548
GSVIVG00009727001
SubName- Full=Chromosome undetermined scaffold_247, whole genome shotgun sequence; (888 aa)
      0.533
GSVIVG00017340001
SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (190 aa)
       0.513

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query83
pfam01125145 pfam01125, G10, G10 protein 1e-22
COG5132146 COG5132, BUD31, Cell cycle control protein, G10 fa 1e-13
>gnl|CDD|216312 pfam01125, G10, G10 protein Back     alignment and domain information
 Score = 84.3 bits (209), Expect = 1e-22
 Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 42/114 (36%)

Query: 1   MPKVKTNRVQN-PEGWELIEPTLREL---------------------------------- 25
           MP+++T+R +  PEG++ IEPTL E                                   
Sbjct: 1   MPRIRTSRTKKPPEGFDKIEPTLDEFEAKMRDAENEPHEGKRKKELLWPIFRIHHQRSRY 60

Query: 26  -------QKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
                  +K IS ELY++ L + YA  NLIAK K+PGYE+LCCLRC+Q  + NF
Sbjct: 61  VYDLYYKRKAISRELYDWLLKEKYADANLIAKWKKPGYEKLCCLRCIQTGETNF 114


Length = 145

>gnl|CDD|227461 COG5132, BUD31, Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 83
KOG3404145 consensus G10 protein/predicted nuclear transcript 100.0
PF01125145 G10: G10 protein; InterPro: IPR001748 A Xenopus pr 100.0
COG5132146 BUD31 Cell cycle control protein, G10 family [Tran 100.0
PF1407748 WD40_alt: Alternative WD40 repeat motif 88.63
>KOG3404 consensus G10 protein/predicted nuclear transcription regulator [Transcription] Back     alignment and domain information
Probab=100.00  E-value=6.9e-47  Score=270.93  Aligned_cols=75  Identities=61%  Similarity=1.120  Sum_probs=73.7

Q ss_pred             CCCCCCCCCCCCCchhhhHHHHHHH-----------------------------------------HHHHHHHHHHHHHh
Q 040196            1 MPKVKTNRVQNPEGWELIEPTLREL-----------------------------------------QKEISMELYEFCLD   39 (83)
Q Consensus         1 MPkir~~~k~pPeG~e~IeptL~e~-----------------------------------------~k~ISreLYe~~l~   39 (83)
                      |||||++||+||+|||+|||||++|                                         |++||+|||+||++
T Consensus         1 mpkv~~~rk~~Pdg~e~IeptL~e~e~kmReae~~~~~~~~~~E~lwpIfqlhHQrsRYiYdlyykR~~IS~eLY~~~l~   80 (145)
T KOG3404|consen    1 MPKVKRSRKPPPDGWELIEPTLEEFEAKMREAETEPHEGKRKTESLWPIFQLHHQRSRYIYDLYYKRKAISRELYDYCLK   80 (145)
T ss_pred             CCccCcCCCCCCcchhhhhhhHHHHHHHHHHhhcCcccCCCcchhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999                                         99999999999999


Q ss_pred             hchhhHHHHHccCccchhhhhhccccccCCCCcchh
Q 040196           40 QGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNFQMH   75 (83)
Q Consensus        40 ~~yaD~~LIaKWKK~GYE~LCCl~CIq~~d~nfgt~   75 (83)
                      |+|||++|||||||+|||+||||||||++|+||||+
T Consensus        81 ~~yaD~~LiakWkk~GYE~LCClRCIq~~dsn~Gt~  116 (145)
T KOG3404|consen   81 EKYADKNLIAKWKKQGYENLCCLRCIQTRDSNFGTT  116 (145)
T ss_pred             cccchHHHHHHHhhcCccceeeeeeccccccCCCce
Confidence            999999999999999999999999999999999965



>PF01125 G10: G10 protein; InterPro: IPR001748 A Xenopus protein known as G10 [] has been found to be highly conserved in a wide range of eukaryotic species Back     alignment and domain information
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning] Back     alignment and domain information
>PF14077 WD40_alt: Alternative WD40 repeat motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00