Citrus Sinensis ID: 040206

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHFIVRTVFPYETIEIENPKNGDLFKVKD
Secondary Structure (PSIPRED)
cccEEEccccccccccHHHHccccccEEEcccccccccccHHHHHcccccccEEEccccccccccccccccccEEEccccccccccccccccccEEEEEccEEEEcccHHHHccccccEEEccccccEEcccccccccccccEEccccEEEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccEEEEccccccccccccEEEccccccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHccccEEEEcccccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccHHHccccccEEEEEccccccccccHHHHccccccccEEEccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccEEEEcccccccccccHHHccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEEccccccccccccHcccccccc
Coil and Loop (DISEMBL)
ktiktqvktcnisefpdilRTQHQLEWLDlsknqirgripswmwdigVHTLQFLILSQNVltsidhlpwknlqyltldsnllqgslpdlpphMVQLLIsnnsltgeipssfcnlssiqylnlsnnslsgqipqclgnstletldlgmnnfqgsipqtnakgcnltslrlsgnhlegplppslincvnlqfldvgnnnlsgpipeclgnstrlsfldvgnnslsgpipeclanstLEILDMRMnkfsgslpqnickklcfgplppslvncqylevldvgnnqiddTFLYWLDVLLQLQVLILRsnrfwgpigklrsrwsghfivrtvfpyetieienpkngdlfkvkd
Flexible Loop (DISEMBL)
ktiktqvktcnisefpdilrtqHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGklrsrwsghfivrtvfpyetieienpkngdlfkvkd
Low Complexity Region (SEG)
KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFlywldvllqlqvlilRSNRFWGPIGKLRSRWSGHFIVRTVFPYETIEIENPKNGDLFKVKD
Disordered region (IsUnstruct)
******VKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHFIVRTVFPYETIEIE************
Disordered Region (DISOPRED)
KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHFIVRTVFPYETIEIENPKNGDLFKV**
Disordered Region (DISEMBL)
KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHFIVRTVFPYETIEIENPKNGDLFKVKD
Disordered Region (DISPRO)
KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHFIVRTVFPYETIEIENPKNGDLF****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHFIVRTVFPYETIEIENPKNGDLFKVKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	347	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.864	0.287	0.355	2e-32
Q9C9H7	847	Receptor-like protein 12	no	no	0.855	0.350	0.314	5e-32
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.818	0.25	0.355	2e-31
O22938	890	Leucine-rich repeat recep	no	no	0.847	0.330	0.319	9e-30
Q9FL28	1173	LRR receptor-like serine/	no	no	0.798	0.236	0.347	1e-29
Q42371	976	LRR receptor-like serine/	no	no	0.855	0.304	0.347	4e-29
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.864	0.275	0.295	6e-29
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.835	0.240	0.340	9e-29
O49318	1124	Probable leucine-rich rep	no	no	0.853	0.263	0.338	5e-28
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.806	0.223	0.322	7e-28

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 164/326 (50%), Gaps = 26/326 (7%)

Query: 12  ISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHT-LQFLILSQNVLTSIDHLPWK 70
           + E P  L     L+ L L +N++ G IPS   +IG  T +  + +  N+LT      + 
Sbjct: 155 VGEIPPELGDLSNLDTLHLVENKLNGSIPS---EIGRLTKVTEIAIYDNLLTGPIPSSFG 211

Query: 71  NLQYLT---LDSNLLQGSLPDLP---PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN 124
           NL  L    L  N L GS+P      P++ +L +  N+LTG+IPSSF NL ++  LN+  
Sbjct: 212 NLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFE 271

Query: 125 NSLSGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI 183
           N LSG+IP  +GN T L+TL L  N   G IP T      L  L L  N L G +PP L 
Sbjct: 272 NQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELG 331

Query: 184 NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST-LEILDMRM 242
              ++  L++  N L+GP+P+  G  T L +L + +N LSGPIP  +ANST L +L +  
Sbjct: 332 EMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDT 391

Query: 243 NKFSGSLPQNICK--KL---------CFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLD 291
           N F+G LP  IC+  KL           GP+P SL +C+ L  +    N           
Sbjct: 392 NNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFG 451

Query: 292 VLLQLQVLILRSNRFWGPIGKLRSRW 317
           V   L  + L +N F    G+L + W
Sbjct: 452 VYPTLNFIDLSNNNFH---GQLSANW 474

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  138 bits (348), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 172/388 (44%), Gaps = 91/388 (23%)

Query: 12  ISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIG--VH-------------------- 49
           + + PD +    QL  L L+ N + G IPS + ++   VH                    
Sbjct: 195 VGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLI 254

Query: 50  ------------------------TLQFLILSQNVLTS---IDHLPWKNLQYLTLDSNLL 82
                                    L   +LS N  TS    D   + NL+Y  +  N  
Sbjct: 255 ELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSF 314

Query: 83  QGSLPD---LPPHMVQLLISNNSLTGEIPSSFCNLSS---IQYLNLSNNSLSGQIPQCLG 136
            G  P    L P +  + +  N  TG  P  F N SS   +Q L L  N L G IP+ + 
Sbjct: 315 SGPFPKSLLLIPSLESIYLQENQFTG--PIEFANTSSSTKLQDLILGRNRLHGPIPESIS 372

Query: 137 N-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL--INCVNL----- 188
               LE LD+  NNF G+IP T +K  NL  L LS N+LEG +P  L  +N + L     
Sbjct: 373 RLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSF 432

Query: 189 -------------QFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN--S 233
                        + LD+ +N+  GPIP  +   + L FLD+ NN  SG IP C+ N   
Sbjct: 433 SSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSG 492

Query: 234 TLEILDMRMNKFSGSLPQNICKKLCF-----------GPLPPSLVNCQYLEVLDVGNNQI 282
           +++ L++  N FSG+LP    K               G  P SL+NC+ LE+++V +N+I
Sbjct: 493 SIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKI 552

Query: 283 DDTFLYWLDVLLQLQVLILRSNRFWGPI 310
            D F  WL+ L  L VL LRSN+F+GP+
Sbjct: 553 KDIFPSWLESLPSLHVLNLRSNKFYGPL 580

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 163/307 (53%), Gaps = 23/307 (7%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHTL---QFLILSQNVLTSIDHLPWKNLQYLTLDSNL 81
           L++LD+S N   G+IPS + ++    L    +  L+  +  S+ +L  ++LQYL LD NL
Sbjct: 164 LQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNL--QSLQYLWLDFNL 221

Query: 82  LQGSLPDLPPH---MVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-N 137
           LQG+LP    +   +V L  S N + G IP+++  L  ++ L+LSNN+ SG +P  L  N
Sbjct: 222 LQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCN 281

Query: 138 STLETLDLGMNNFQGSI-PQTNAK-GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGN 195
           ++L  + LG N F   + P+T A     L  L L  N + G  P  L N ++L+ LDV  
Sbjct: 282 TSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWLTNILSLKNLDVSG 341

Query: 196 NNLSGPIPECLGNSTRLSFLDVGNNSLSGPIP-ECLANSTLEILDMRMNKFSGSLPQ--- 251
           N  SG IP  +GN  RL  L + NNSL+G IP E     +L++LD   N   G +P+   
Sbjct: 342 NLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLG 401

Query: 252 --------NICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRS 303
                   ++ +    G +P S+VN Q LE L++G N ++ +F   L  L  L  L L  
Sbjct: 402 YMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSG 461

Query: 304 NRFWGPI 310
           NRF G +
Sbjct: 462 NRFSGAV 468

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1

 Score =  131 bits (329), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 157/319 (49%), Gaps = 25/319 (7%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS---IDHL 67
           N++   D+   +H    LDLS N   GRIP+   ++    L+FL LS N       ++  
Sbjct: 78  NVTLISDLRSLKH----LDLSGNNFNGRIPTSFGNLS--ELEFLDLSLNRFVGAIPVEFG 131

Query: 68  PWKNLQYLTLDSNLLQGSLPD---LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN 124
             + L+   + +NLL G +PD   +   + +  +S N L G IP    NLSS++      
Sbjct: 132 KLRGLRAFNISNNLLVGEIPDELKVLERLEEFQVSGNGLNGSIPHWVGNLSSLRVFTAYE 191

Query: 125 NSLSGQIPQCLG-NSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI 183
           N L G+IP  LG  S LE L+L  N  +G IP+   +   L  L L+ N L G LP ++ 
Sbjct: 192 NDLVGEIPNGLGLVSELELLNLHSNQLEGKIPKGIFEKGKLKVLVLTQNRLTGELPEAVG 251

Query: 184 NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI-PECLANSTLEILDMRM 242
            C  L  + +GNN L G IP  +GN + L++ +   N+LSG I  E    S L +L++  
Sbjct: 252 ICSGLSSIRIGNNELVGVIPRTIGNISGLTYFEADKNNLSGEIVAEFSKCSNLTLLNLAA 311

Query: 243 NKFSGSLPQNICKKL-----------CFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLD 291
           N F+G++P  + + +            FG +P S +    L  LD+ NN+++ T    L 
Sbjct: 312 NGFAGTIPTELGQLINLQELILSGNSLFGEIPKSFLGSGNLNKLDLSNNRLNGTIPKELC 371

Query: 292 VLLQLQVLILRSNRFWGPI 310
            + +LQ L+L  N   G I
Sbjct: 372 SMPRLQYLLLDQNSIRGDI 390

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  130 bits (327), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 150/305 (49%), Gaps = 28/305 (9%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIG-VHTLQFLILSQNVLTSIDHLPWK---- 70
           P  + T   L  LDLS NQ+ G+IP    D G +  LQ L+L++N+L     +P +    
Sbjct: 209 PVSIGTLANLTDLDLSGNQLTGKIPR---DFGNLLNLQSLVLTENLLEG--DIPAEIGNC 263

Query: 71  -NLQYLTLDSNLLQGSLPDLPPHMVQ---LLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126
            +L  L L  N L G +P    ++VQ   L I  N LT  IPSS   L+ + +L LS N 
Sbjct: 264 SSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENH 323

Query: 127 LSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINC 185
           L G I + +G   +LE L L  NNF G  PQ+     NLT L +  N++ G LP  L   
Sbjct: 324 LVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLL 383

Query: 186 VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKF 245
            NL+ L   +N L+GPIP  + N T L  LD+ +N ++G IP       L  + +  N F
Sbjct: 384 TNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHF 443

Query: 246 SGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
           +G +P +I              NC  LE L V +N +  T    +  L +L++L +  N 
Sbjct: 444 TGEIPDDI-------------FNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNS 490

Query: 306 FWGPI 310
             GPI
Sbjct: 491 LTGPI 495

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 166/351 (47%), Gaps = 54/351 (15%)

Query: 14  EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT-SIDHLPWKN- 71
           + P  +    QLE L L  NQ+ G IPS +  I    L+ L L+QN L+  I  L + N 
Sbjct: 131 DIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIP--NLKILDLAQNKLSGEIPRLIYWNE 188

Query: 72  -LQYLTLDSNLLQGSLPDLPPHMVQLL------ISNNSLTGEIPSSFCNLSSIQYLNLSN 124
            LQYL L  N L G   ++ P + QL       + NNSLTG IP +  N ++ Q L+LS 
Sbjct: 189 VLQYLGLRGNNLVG---NISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSY 245

Query: 125 NSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSG------------- 171
           N L+G+IP  +G   + TL L  N   G IP        L  L LSG             
Sbjct: 246 NQLTGEIPFDIGFLQVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIPPILGN 305

Query: 172 -----------NHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNN 220
                      N L G +PP L N   L +L++ +N+L+G IP  LG  T L  L+V NN
Sbjct: 306 LTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANN 365

Query: 221 SLSGPIPECLANST-LEILDMRMNKFSGSLPQ-----------NICKKLCFGPLPPSLVN 268
            L GPIP+ L++ T L  L++  NKFSG++P+           N+      GP+P  L  
Sbjct: 366 DLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVELSR 425

Query: 269 CQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI----GKLRS 315
              L+ LD+ NN+I+      L  L  L  + L  N   G +    G LRS
Sbjct: 426 IGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRS 476

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  128 bits (322), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 169/345 (48%), Gaps = 45/345 (13%)

Query: 14  EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS---IDHLPWK 70
           E P  L    +L+ L+L  N++ G IP  +W I   +L  +++  N LT    ++    K
Sbjct: 331 EIPPALSKLKKLQSLELFFNKLSGEIPIGIWKI--QSLTQMLVYNNTLTGELPVEVTQLK 388

Query: 71  NLQYLTLDSNLLQGSLP---------------------DLPPHMVQ------LLISNNSL 103
           +L+ LTL +N   G +P                     ++PPH+         ++ +N L
Sbjct: 389 HLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQL 448

Query: 104 TGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCN 163
            G+IP+S     +++ + L +N LSG +P+   + +L  ++LG N+F+GSIP++     N
Sbjct: 449 HGKIPASIRQCKTLERVRLEDNKLSGVLPEFPESLSLSYVNLGSNSFEGSIPRSLGSCKN 508

Query: 164 LTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS 223
           L ++ LS N L G +PP L N  +L  L++ +N L GP+P  L    RL + DVG+NSL+
Sbjct: 509 LLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYLEGPLPSQLSGCARLLYFDVGSNSLN 568

Query: 224 GPIPECLAN-STLEILDMRMNKFSGSLPQ-----------NICKKLCFGPLPPSLVNCQY 271
           G IP    +  +L  L +  N F G++PQ            I +    G +P S+   + 
Sbjct: 569 GSIPSSFRSWKSLSTLVLSDNNFLGAIPQFLAELDRLSDLRIARNAFGGKIPSSVGLLKS 628

Query: 272 LEV-LDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRS 315
           L   LD+  N         L  L+ L+ L + +N+  GP+  L+S
Sbjct: 629 LRYGLDLSANVFTGEIPTTLGALINLERLNISNNKLTGPLSVLQS 673

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  127 bits (320), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 159/317 (50%), Gaps = 27/317 (8%)

Query: 15  FPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS-IDHLPWKNLQ 73
           F D    QH    LDLS N+  G I S +   G   L FL L+ N     +  LP ++LQ
Sbjct: 253 FKDCSNLQH----LDLSSNKFYGDIGSSLSSCG--KLSFLNLTNNQFVGLVPKLPSESLQ 306

Query: 74  YLTLDSNLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
           YL L  N  QG  P    DL   +V+L +S N+ +G +P S    SS++ +++SNN+ SG
Sbjct: 307 YLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVDISNNNFSG 366

Query: 130 QIP--QCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLIN--C 185
           ++P    L  S ++T+ L  N F G +P + +    L +L +S N+L G +P  +     
Sbjct: 367 KLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPM 426

Query: 186 VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNK 244
            NL+ L + NN   GPIP+ L N ++L  LD+  N L+G IP  L + S L+ L + +N+
Sbjct: 427 NNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQ 486

Query: 245 FSGSLPQNICKKLCF-----------GPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVL 293
            SG +PQ +                 GP+P SL NC  L  + + NNQ+       L  L
Sbjct: 487 LSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRL 546

Query: 294 LQLQVLILRSNRFWGPI 310
             L +L L +N   G I
Sbjct: 547 SNLAILKLGNNSISGNI 563

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  125 bits (314), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 108/319 (33%), Positives = 157/319 (49%), Gaps = 23/319 (7%)

Query: 12  ISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIG-VHTLQFLILSQNVLTS---IDHL 67
           +   P  +     L+ L L +NQ+ G IP  +  +  V  + F   S+N+L+    ++  
Sbjct: 290 VGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDF---SENLLSGEIPVELS 346

Query: 68  PWKNLQYLTLDSNLLQGSLPDLPP---HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN 124
               L+ L L  N L G +P+      ++ +L +S NSLTG IP  F NL+S++ L L +
Sbjct: 347 KISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFH 406

Query: 125 NSLSGQIPQCLG-NSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI 183
           NSLSG IPQ LG  S L  +D   N   G IP    +  NL  L L  N + G +PP ++
Sbjct: 407 NSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVL 466

Query: 184 NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI-PECLANSTLEILDMRM 242
            C +L  L V  N L+G  P  L     LS +++  N  SGP+ PE      L+ L +  
Sbjct: 467 RCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAA 526

Query: 243 NKFSGSLPQNICK---KLCF--------GPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLD 291
           N+FS +LP  I K    + F        GP+P  + NC+ L+ LD+  N    +    L 
Sbjct: 527 NQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELG 586

Query: 292 VLLQLQVLILRSNRFWGPI 310
            L QL++L L  NRF G I
Sbjct: 587 SLHQLEILRLSENRFSGNI 605

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  125 bits (313), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 151/304 (49%), Gaps = 24/304 (7%)

Query: 14  EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP-WK-- 70
           E P  L     +++L+L  NQ++G IP  + ++    LQ L LS N LT + H   W+  
Sbjct: 255 EIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELA--NLQTLDLSSNNLTGVIHEEFWRMN 312

Query: 71  NLQYLTLDSNLLQGSLPDL----PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126
            L++L L  N L GSLP         + QL +S   L+GEIP+   N  S++ L+LSNN+
Sbjct: 313 QLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNT 372

Query: 127 LSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINC 185
           L+GQIP  L     L  L L  N+ +G++  + +   NL    L  N+LEG +P  +   
Sbjct: 373 LTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFL 432

Query: 186 VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNK 244
             L+ + +  N  SG +P  +GN TRL  +D   N LSG IP  +     L  L +R N+
Sbjct: 433 GKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENE 492

Query: 245 FSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSN 304
             G+             +P SL NC  + V+D+ +NQ+  +       L  L++ ++ +N
Sbjct: 493 LVGN-------------IPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNN 539

Query: 305 RFWG 308
              G
Sbjct: 540 SLQG 543

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
224116970	921	predicted protein [Populus trichocarpa]	0.708	0.267	0.488	9e-50
356551688	1135	PREDICTED: receptor-like protein 12-like	0.861	0.263	0.390	1e-48
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.703	0.141	0.454	2e-48
359485824	973	PREDICTED: receptor-like protein 12-like	0.806	0.287	0.404	3e-47
224061455	804	predicted protein [Populus trichocarpa]	0.861	0.371	0.401	9e-47
225462116	1001	PREDICTED: receptor-like protein 12-like	0.798	0.276	0.393	2e-46
147794486	1924	hypothetical protein VITISV_000631 [Viti	0.703	0.126	0.442	3e-46
255568090	1014	serine/threonine-protein kinase bri1, pu	0.729	0.249	0.451	3e-46
224140511	894	predicted protein [Populus trichocarpa]	0.700	0.271	0.444	5e-46
449454684	1068	PREDICTED: receptor-like protein 12-like	0.835	0.271	0.416	2e-45

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score =  203 bits (517), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 123/252 (48%), Positives = 162/252 (64%), Gaps = 6/252 (2%)

Query: 4   KTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS 63
           K  + +CNI EFPD L+ Q+QL +L LS N+I G IP W+   G+ +LQ+L LS N LT 
Sbjct: 432 KLALSSCNIIEFPDFLKIQNQLNFLSLSHNRIHGEIPKWLSAKGMQSLQYLDLSHNFLTI 491

Query: 64  IDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLS 123
           ++ LP  +LQYL L SNLLQ   P LP  M  LLI+NN LTGEIP   CN+++ Q +NLS
Sbjct: 492 VNELP-PSLQYLDLTSNLLQQPFPILPQSMYILLIANNKLTGEIPPWICNITTFQIINLS 550

Query: 124 NNSLSGQIPQCLGN--STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPS 181
           NNSLSG IPQCLGN  + L  L+L  N+F G+IP +  +G  + SL L+GN LEG LP S
Sbjct: 551 NNSLSGNIPQCLGNFSTELSVLNLRSNSFHGTIPGSFTEGNKIRSLDLNGNELEGSLPLS 610

Query: 182 LINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI--PECLA-NSTLEIL 238
           L NC  L+ LD+GNN ++   P  L    +L  L + +N L G I  P  ++  S+L I+
Sbjct: 611 LANCKMLEVLDLGNNYINDSFPLWLQTLPKLQVLVLRSNRLHGSIGNPTAISPFSSLRII 670

Query: 239 DMRMNKFSGSLP 250
           D+  N+F G LP
Sbjct: 671 DLSHNEFIGLLP 682

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551688|ref|XP_003544206.1| PREDICTED: receptor-like protein 12-like [Glycine max]

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/338 (39%), Positives = 187/338 (55%), Gaps = 39/338 (11%)

Query: 7   VKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH 66
           + +CNI+ FP +L     L  LDLS+NQI G+IP W    G  TL FL LS N+LTS+ +
Sbjct: 534 LSSCNINSFPKLLSGLKYLNSLDLSRNQIHGKIPKWFNSTGKDTLSFLDLSHNLLTSVGY 593

Query: 67  --LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQ------ 118
             L W  +QY+ L  N+LQG +P  P  +    +SNN LTG I S+ CN SS+Q      
Sbjct: 594 LSLSWATMQYIDLSFNMLQGDIPVPPSGIEYFSVSNNKLTGRISSTICNASSLQIPKWFN 653

Query: 119 --------YLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLS 170
                   +L+LS+N L+      L  +T++ +DL  N  QG IP        +    +S
Sbjct: 654 STGKDTLSFLDLSHNLLTSVGYLSLSWATMQYIDLSFNMLQGDIP---VPPSGIEYFSVS 710

Query: 171 GNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL 230
            N L G +  ++ N  +LQ L++ +NNL+G +P+CLG    LS LD+  N LSG IP+  
Sbjct: 711 NNKLTGRISSTICNASSLQILNLSHNNLTGKLPQCLGTFPYLSVLDLRRNMLSGMIPK-- 768

Query: 231 ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWL 290
             + LEI  +    F+G+  +        G LP S+V C+ L+VLD+G N I DTF  +L
Sbjct: 769 --TYLEIEALVTMNFNGNQLE--------GQLPRSVVKCKQLKVLDLGENNIQDTFPTFL 818

Query: 291 DVLLQLQVLILRSNRFWGPIGKLRSRWSGHFIVRTVFP 328
           + L QLQVL+LR+NRF G I  L+        ++ VFP
Sbjct: 819 ESLQQLQVLVLRANRFNGTINCLK--------LKNVFP 848

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/253 (45%), Positives = 151/253 (59%), Gaps = 9/253 (3%)

Query: 7    VKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH 66
            + +CN+ EFP  LR Q +LE L LS N+I G+IP W+W+IG  TL  + L+ N LT  + 
Sbjct: 1222 LASCNLGEFPHFLRNQDELELLKLSNNKIHGKIPKWIWNIGKETLSLMDLAHNFLTGFEQ 1281

Query: 67   ----LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNL 122
                LPW +L YL L SN+LQGSLP  P  +    + NN  TG+IP   CNLS +  L+L
Sbjct: 1282 PXVXLPWXSLIYLELSSNMLQGSLPVPPSSISTYFVENNRFTGKIPPLXCNLSLLHMLDL 1341

Query: 123  SNNSLSGQIPQCLGN--STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPP 180
            SNN+LSG IP+CL N  ++L  L+L  NNF G+IPQ    G  L  + LS N LEGP+P 
Sbjct: 1342 SNNTLSGMIPECLSNLXNSLSVLNLXGNNFHGAIPQAFEVGSKLKMIDLSQNLLEGPVPR 1401

Query: 181  SLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN---STLEI 237
            SL NC  L+ L++GNN +S   P  LG    L  L + +N   G I +   N     L I
Sbjct: 1402 SLTNCTVLESLNLGNNQISDTFPFWLGALPELQVLILRSNRFHGAIGKPRTNFEFPKLRI 1461

Query: 238  LDMRMNKFSGSLP 250
            +D+  N FSG+LP
Sbjct: 1462 IDLSYNSFSGNLP 1474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/292 (40%), Positives = 167/292 (57%), Gaps = 12/292 (4%)

Query: 9   TCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-- 66
           +CN++EFPD L+ QH+LE + LS+N+I G IP W+W+I   TL  L LS+N LT  D   
Sbjct: 474 SCNLTEFPDFLQNQHELEIITLSENKIHGPIPKWVWNISKETLVTLELSENFLTGFDQRP 533

Query: 67  --LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN 124
             LPW  L  L LDSN+LQG LP  PP  V+ L+S N LTGEI    CN++S++ L+LS+
Sbjct: 534 FVLPWSKLHTLRLDSNMLQGPLPVPPPSTVEYLVSGNKLTGEISPLICNMTSLELLDLSS 593

Query: 125 NSLSGQIPQCLGN--STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL 182
           N+LSG+IPQCL N   +L  LDLG N+  G IP+      NL  + L  N  +G +P SL
Sbjct: 594 NNLSGRIPQCLANFSRSLFVLDLGSNSLDGPIPEICTVSHNLNVIDLGDNQFQGQIPRSL 653

Query: 183 INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN---STLEILD 239
           +NC  L+ L +GNN ++   P  LG   +L  L + +N   G I     N     L I+D
Sbjct: 654 VNCTMLEHLVLGNNKINDIFPFWLGALPQLQVLILRSNRFHGAIGSWHTNFRFPKLRIID 713

Query: 240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEV---LDVGNNQIDDTFLY 288
           +  N+F G LP    +      L       +Y+++   +D+ NN +   ++Y
Sbjct: 714 LSDNEFIGDLPSEYFQNWDAMKLTDIASGLRYMQISPMIDLKNNVMITGYMY 765

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061455|ref|XP_002300488.1| predicted protein [Populus trichocarpa] gi|222847746|gb|EEE85293.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (491), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 131/326 (40%), Positives = 187/326 (57%), Gaps = 27/326 (8%)

Query: 9   TCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-- 66
           +CN+S  P  LR Q  L  L LS N+I+G +P W+W +   +L +L LS N LT I+   
Sbjct: 244 SCNVSRIPSFLRNQDGLVELGLSNNKIQGILPKWIWQL--ESLSYLNLSNNFLTGIETPV 301

Query: 67  -LP-WKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN 124
             P + +L  L L  N L+GS P  PP +  L +S N  TG++P SFCN++S+  L++S 
Sbjct: 302 LAPLFSSLTLLDLSYNFLEGSFPIFPPSVNLLSLSKNKFTGKLPVSFCNMNSLAILDISY 361

Query: 125 NSLSGQIPQCLG----NSTLETLDLGMNNFQG-SIPQTNAKGCNLTSLRLSGNHLEGPLP 179
           N L+GQIPQ         +L  L+L  N   G   P +     +LTSL L+ N +EG +P
Sbjct: 362 NHLTGQIPQLPKWIWLLESLVYLNLSNNFLDGFEAPPSAPFLSSLTSLDLTSNLIEGSIP 421

Query: 180 PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA--NSTLEI 237
              I+   + FL +  N L+G IP  L + + L+ LD   N +SG IP+CL     TL +
Sbjct: 422 TLPIS---ISFLSLAKNKLTGEIPVSLCSLSNLTILDACYNYMSGLIPKCLEVLGDTLIV 478

Query: 238 LDMRMNKFSGSLPQNICKKLCF-----------GPLPPSLVNCQYLEVLDVGNNQIDDTF 286
           L++R N+FSG +P    K+              G +P SL +C+ L+VLD+G+NQI+DTF
Sbjct: 479 LNLRKNRFSGLMPWKFTKECSLKTLNLYANQLTGKIPMSLKHCKRLQVLDLGDNQINDTF 538

Query: 287 LYWLDVLLQLQVLILRSNRFWGPIGK 312
            +WL VL  L+VLIL+SN   GPIG+
Sbjct: 539 PFWLGVLPDLRVLILQSNSLRGPIGE 564

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/318 (39%), Positives = 168/318 (52%), Gaps = 41/318 (12%)

Query: 7   VKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH 66
           + +CNISEFP  L +Q  LE+LDLS N+I G++P W W++G  TL +  LSQN+LT  + 
Sbjct: 531 LSSCNISEFPRFLCSQEVLEFLDLSNNKIYGQLPKWAWNMGTETLSYFNLSQNLLTRFER 590

Query: 67  LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126
            PWKN+ +L L SNLLQG LP L                      C +S I  L+ SNN+
Sbjct: 591 FPWKNMLFLDLHSNLLQGPLPSL---------------------ICEMSYISVLDFSNNN 629

Query: 127 LSGQIPQCLGN--STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLIN 184
           LSG IPQCLGN   +L  LDL MN   G+IP+T +KG  + +L  +GN LEGPLP SLIN
Sbjct: 630 LSGLIPQCLGNFSESLSVLDLRMNQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSLIN 689

Query: 185 CVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPEC---LANSTLEILDMR 241
           C  LQ LD+GNN ++   P  L     L  L + +N   G I           L I+D+ 
Sbjct: 690 CRRLQVLDLGNNRINDTFPYWLETLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMDLS 749

Query: 242 MNKFSGSLPQNICKKLCFGPLPPSLVNC--QYLEVLDVGNNQIDDT-------FLYWLDV 292
            N FSGSLP+   K         +++N     +++  +G     D+       F +   +
Sbjct: 750 RNDFSGSLPEMYLKNF------KAMMNVTEDKMKLKYMGEYYYRDSIMGTIKGFDFEFVI 803

Query: 293 LLQLQVLILRSNRFWGPI 310
           L     + L SNRF G I
Sbjct: 804 LSTFTTIDLSSNRFQGEI 821

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794486|emb|CAN71611.1| hypothetical protein VITISV_000631 [Vitis vinifera]

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 112/253 (44%), Positives = 150/253 (59%), Gaps = 9/253 (3%)

Query: 7    VKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH 66
            + +CN+SEFP  LR Q +L++L LS N+I G+IP WMW++G  TL  + LS N+LT  + 
Sbjct: 1429 LASCNLSEFPHFLRNQDELKFLTLSDNKIHGQIPKWMWNMGKETLWVMDLSNNLLTXFEQ 1488

Query: 67   ----LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNL 122
                LPW  L+ L L  N LQGSLP  P  +    + NN L G+ PS  C+L  +  L+L
Sbjct: 1489 APVVLPWITLRVLELSYNQLQGSLPVPPXSISDYFVHNNRLNGKXPSLICSLHHLHILDL 1548

Query: 123  SNNSLSGQIPQCLGNS--TLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPP 180
            SNN+LSG IPQCL +S  +L  L+L  NNF GSIPQT    C L  +  S N LEG +P 
Sbjct: 1549 SNNNLSGMIPQCLXDSSDSLSVLNLRGNNFHGSIPQTFTSQCRLKMIDFSYNQLEGQIPR 1608

Query: 181  SLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN---STLEI 237
            SL NC   + L++GNN ++   P  LG+   L  L + +N   G I    AN    TL I
Sbjct: 1609 SLXNCKEXEILNLGNNQINDTFPFWLGSLPELQLLILRHNRFHGAIESPRANFEFPTLCI 1668

Query: 238  LDMRMNKFSGSLP 250
            +D+  N F+G+LP
Sbjct: 1669 IDLSYNXFAGNLP 1681

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568090|ref|XP_002525021.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223535683|gb|EEF37348.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/259 (45%), Positives = 152/259 (58%), Gaps = 6/259 (2%)

Query: 4   KTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS 63
           K  + +CNI+EFP  L TQ  L  LDLS N+I G+      + G  +LQFL LS N LT 
Sbjct: 507 KMTLSSCNITEFPYFLSTQQALTALDLSNNRIHGQFSKQKSE-GWKSLQFLNLSGNFLTG 565

Query: 64  IDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLS 123
           +D  PW+N+  L L+ N LQG L   PP + Q ++SNN L+GEIPS  CNL SIQ L+LS
Sbjct: 566 LDQHPWQNIDTLDLNFNWLQGQLSVPPPSIRQFMVSNNRLSGEIPSFICNLGSIQVLDLS 625

Query: 124 NNSLSGQIPQCLG--NSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPS 181
           NN  SG IP+CLG   + L  LDL  NNF G IP+      +L  L L GN+ EGPLPPS
Sbjct: 626 NNGFSGLIPKCLGIMMNWLVILDLRNNNFSGKIPEVFGNSGSLVYLNLHGNNFEGPLPPS 685

Query: 182 LINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANS---TLEIL 238
           L NC  L+ LD GNNN+    P  L     L  L + +NS  G + +   +    +L+IL
Sbjct: 686 LGNCSGLRILDFGNNNIRDTFPHWLEALPNLEILILRSNSFHGEVGDPSVDHPFPSLQIL 745

Query: 239 DMRMNKFSGSLPQNICKKL 257
           D+  N F+G +P  + + L
Sbjct: 746 DLSHNHFTGFVPIKLMQNL 764

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140511|ref|XP_002323626.1| predicted protein [Populus trichocarpa] gi|222868256|gb|EEF05387.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 112/252 (44%), Positives = 152/252 (60%), Gaps = 9/252 (3%)

Query: 8   KTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT----S 63
           + CN+ E P  LR Q+QLE L++  N++ G IP W  ++   TL+ L L+ N+LT    S
Sbjct: 393 EGCNLGELPSFLRDQNQLEILEIGDNKLEGHIPKWFMNVSTITLEALSLAGNLLTGFEQS 452

Query: 64  IDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLS 123
            D LPW NL+ L+L+SN  QGSLP  PP + +  +SNN L GEIP   CNL+S+  L+LS
Sbjct: 453 FDVLPWNNLRSLSLNSNKFQGSLPIPPPAIYEYQVSNNKLNGEIPEVICNLTSLSVLDLS 512

Query: 124 NNSLSGQIPQCLGN--STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPS 181
           NN+LSG++P CLGN  ST   L+L  N+F G IP+T   GC+L  + LS N LEG +P S
Sbjct: 513 NNNLSGKLPPCLGNKSSTASVLNLRNNSFSGDIPETFTSGCSLRVVDLSQNKLEGKIPKS 572

Query: 182 LINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN---STLEIL 238
           L NC  L+ L++  NN++   P  LG    L  L   +N L G I +   N     L+I+
Sbjct: 573 LANCAELEILNLEQNNINDVFPSWLGMLPDLKVLIFRSNGLHGVIGKPETNVDFPRLQIV 632

Query: 239 DMRMNKFSGSLP 250
           D+  N F G LP
Sbjct: 633 DLSNNSFKGKLP 644

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454684|ref|XP_004145084.1| PREDICTED: receptor-like protein 12-like [Cucumis sativus] gi|449471911|ref|XP_004153442.1| PREDICTED: receptor-like protein 12-like [Cucumis sativus] gi|449520982|ref|XP_004167511.1| PREDICTED: receptor-like protein 12-like [Cucumis sativus]

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/312 (41%), Positives = 169/312 (54%), Gaps = 22/312 (7%)

Query: 3   IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT 62
           +  ++ +C + E P  LR Q +LE LDLS  QI+G IP W  ++    L  L LS N L+
Sbjct: 511 VHIEMGSCKLGEVPYFLRYQKKLEHLDLSNTQIQGGIPKWFSELSA--LNHLNLSHNSLS 568

Query: 63  SIDH--LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYL 120
           S     L   NL  L LDSNL +   P LP  + Q   SNN  +G I  S C  +++ +L
Sbjct: 569 SGIEILLTLPNLGNLFLDSNLFKLPFPILPSSIKQFTASNNRFSGNIHPSICKATNLTFL 628

Query: 121 NLSNNSLSGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLP 179
           +LSNNSLSG IP C  N T +  L+L  NNF GSIP         T+   S NH  G +P
Sbjct: 629 DLSNNSLSGVIPSCFFNLTFIMLLELKRNNFSGSIPIPPPLILVYTA---SENHFTGEIP 685

Query: 180 PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEIL 238
            S+     L  L + NN+LSG IP CL N + L  LD+ NN  SG +P   A  S L  L
Sbjct: 686 SSICYAKFLAVLSLSNNHLSGTIPPCLANLSSLVVLDMKNNHFSGSVPMPFATGSQLRSL 745

Query: 239 DMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQV 298
           D+  N+  G              LPPSL+NC+ L+VLD+GNN+I   F +WL     L+V
Sbjct: 746 DLNGNQIKGE-------------LPPSLLNCKNLQVLDLGNNKITGVFPHWLGGASNLRV 792

Query: 299 LILRSNRFWGPI 310
           L+LRSN+F G I
Sbjct: 793 LVLRSNQFSGQI 804

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.697	0.271	0.401	3.2e-40
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.688	0.405	0.395	4.2e-40
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.697	0.274	0.401	2.3e-39
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.694	0.304	0.376	5.6e-39
TAIR|locus:2046535	740	RLP28 "receptor like protein 2	0.697	0.327	0.389	1.9e-38
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.694	0.270	0.399	4.6e-38
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.694	0.325	0.387	1.9e-37
TAIR|locus:2040035	671	RLP20 "receptor like protein 2	0.685	0.354	0.373	9e-37
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.700	0.238	0.373	2.1e-36
TAIR|locus:2829370	915	RLP40 "receptor like protein 4	0.688	0.261	0.386	2.1e-36

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.2e-40, P = 3.2e-40
 Identities = 102/254 (40%), Positives = 148/254 (58%)

Query:     7 VKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT---- 62
             ++ C+I+EFP+IL+T  +L ++D+S N+++G+IP W+W + +  LQ + L  N  T    
Sbjct:   397 LRHCDINEFPNILKTLKELVYIDISNNRMKGKIPEWLWSLPL--LQSVTLGNNYFTGFQG 454

Query:    63 SIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNL 122
             S + L   ++  L LDSN  +G+LPDLP  +    +++NS T EIP S CN SS+  ++L
Sbjct:   455 SAEILVNSSVLLLYLDSNNFEGALPDLPLSIKGFGVASNSFTSEIPLSICNRSSLAAIDL 514

Query:   123 SNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL 182
             S N+ +G IP CL N  LE + L  NN +GSIP     G +L +L +S N L G LP S 
Sbjct:   515 SYNNFTGPIPPCLRN--LELVYLRNNNLEGSIPDALCDGASLRTLDVSHNRLTGKLPRSF 572

Query:   183 INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI--PEC--LANSTLEIL 238
             +NC +L+FL V NN +    P  L     L  L + +N   GPI  P    L    L I 
Sbjct:   573 VNCSSLKFLSVINNRIEDTFPFWLKALPNLQVLTLRSNRFYGPISPPHQGPLGFPELRIF 632

Query:   239 DMRMNKFSGSLPQN 252
             ++  NKF+GSLP N
Sbjct:   633 EISDNKFTGSLPPN 646

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 100/253 (39%), Positives = 147/253 (58%)

Query:    10 CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT----SID 65
             CNISEFP  L++  +L +LDLS N+I+G +P W+W + +  L  L LS N  T    S+D
Sbjct:   109 CNISEFPRFLKSLKKLWYLDLSSNRIKGNVPDWIWSLPL--LVSLDLSNNSFTGFNGSLD 166

Query:    66 H-LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN 124
             H L   ++Q L +  N  +GS P+ P  ++ L   NNS TG+IP S CN +S+  L+LS 
Sbjct:   167 HVLANSSVQVLDIALNSFKGSFPNPPVSIINLSAWNNSFTGDIPLSVCNRTSLDVLDLSY 226

Query:   125 NSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLIN 184
             N+ +G IP C+GN T+  ++L  N  +G+IP     G    +L +  N L G LP SL+N
Sbjct:   227 NNFTGSIPPCMGNFTI--VNLRKNKLEGNIPDEFYSGALTQTLDVGYNQLTGELPRSLLN 284

Query:   185 CVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI--PE---CLANSTLEILD 239
             C  ++FL V +N ++   P  L     L  L + +NS  GP+  P+    LA   L+IL+
Sbjct:   285 CSFIRFLSVDHNRINDSFPLWLKALPNLKVLTLRSNSFHGPMSPPDDQSSLAFPKLQILE 344

Query:   240 MRMNKFSGSLPQN 252
             +  N+F+GSLP N
Sbjct:   345 ISHNRFTGSLPTN 357

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 102/254 (40%), Positives = 143/254 (56%)

Query:     7 VKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT---- 62
             +K CNIS+FP+IL++   LE +D+S N++ G+IP W+W +    L  + +  N+LT    
Sbjct:   398 MKQCNISDFPNILKSLPNLECIDVSNNRVSGKIPEWLWSLP--RLSSVFIGDNLLTGFEG 455

Query:    63 SIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNL 122
             S + L   ++Q L LDSN L+G+LP LP  ++      N   G+IP S CN SS+  L+L
Sbjct:   456 SSEILVNSSVQILVLDSNSLEGALPHLPLSIIYFSARYNRFKGDIPLSICNRSSLDVLDL 515

Query:   123 SNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL 182
               N+ +G IP CL N  L  L+L  NN +GSIP T      L SL +  N L G LP SL
Sbjct:   516 RYNNFTGPIPPCLSN--LLFLNLRKNNLEGSIPDTYFADAPLRSLDVGYNRLTGKLPRSL 573

Query:   183 INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI--PE--CLANSTLEIL 238
             +NC  LQFL V +N +    P  L    +L  L + +N   GP+  P    L    L IL
Sbjct:   574 LNCSALQFLSVDHNGIEDTFPFYLKVLPKLQVLLLSSNKFYGPLSPPNQGSLGFPELRIL 633

Query:   239 DMRMNKFSGSLPQN 252
             ++  NK +GSLPQ+
Sbjct:   634 EIAGNKLTGSLPQD 647

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 5.6e-39, P = 5.6e-39
 Identities = 96/255 (37%), Positives = 146/255 (57%)

Query:     7 VKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH 66
             + +CNI+EFP  ++   +L WLD+S N+I+G++P  +W +   ++  + LS+N   S++ 
Sbjct:   310 LSSCNITEFPMFIKDLQRLWWLDISNNRIKGKVPELLWTLP--SMLHVNLSRNSFDSLEG 367

Query:    67 LPW----KNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNL 122
              P      ++  L L SN  +GS P +PP++  +  SNN  TG IP  FC    +  L+L
Sbjct:   368 TPKIILNSSISELDLSSNAFKGSFPIIPPYVNIMAASNNYFTGGIPLIFCKRYRLSLLDL 427

Query:   123 SNNSLSGQIPQCLGNSTL--ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPP 180
             SNN+ SG IP+CL N +L  E L L  N+  G +P    +   L  L +  N + G LP 
Sbjct:   428 SNNNFSGTIPRCLTNVSLGLEALKLSNNSLTGRLPDIEDR---LVLLDVGHNQISGKLPR 484

Query:   181 SLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI--PEC-LANSTLEI 237
             SL+NC  L+FL+V  N+++   P  L   TRL  + + +N   GPI  PE  L+ + L I
Sbjct:   485 SLVNCTTLKFLNVEGNHINDTFPFWLKALTRLEIIVLRSNRFHGPISSPEVSLSFTALRI 544

Query:   238 LDMRMNKFSGSLPQN 252
             +D+  N F+GSLPQN
Sbjct:   545 IDISRNSFNGSLPQN 559

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046535 RLP28 "receptor like protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 1.9e-38, P = 1.9e-38
 Identities = 99/254 (38%), Positives = 145/254 (57%)

Query:     4 KTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT- 62
             K  ++ C I EFP+IL+T  +LE++D+S N+I G+IP W+W +    L+ + L+ N    
Sbjct:   296 KLLLEQCGIIEFPNILKTLQKLEYIDMSNNRINGKIPEWLWRLP--RLRSMSLANNSFNG 353

Query:    63 ---SIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQY 119
                S D L   +++ L + SN +QG+LP+LP  +       N+ +GEIP S CN SS+  
Sbjct:   354 FEGSTDVLVNSSMEILFMHSNNIQGALPNLPLSIKAFSAGYNNFSGEIPLSICNRSSLAA 413

Query:   120 LNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLP 179
             L+L  N+ +G+IPQCL N T   + L  NN +GSIP T   G +L +L +  N + G LP
Sbjct:   414 LSLPYNNFTGKIPQCLSNLTF--VHLRKNNLEGSIPDTLCAGDSLQTLDIGFNLISGTLP 471

Query:   180 PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI-P---ECLANSTL 235
              SL+NC +L+FL V NN +    P  L     L  L + +N L GPI P     LA   L
Sbjct:   472 RSLLNCSSLEFLSVDNNRIKDTFPFWLKALPNLQVLILSSNKLYGPIAPPHQSPLAFPEL 531

Query:   236 EILDMRMNKFSGSL 249
              I ++  N F+G+L
Sbjct:   532 RIFEIADNMFTGTL 545

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.6e-38, P = 4.6e-38
 Identities = 101/253 (39%), Positives = 142/253 (56%)

Query:     6 QVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT--- 62
             +++ C+ISEFP++ +T H LE++ LS N+I G+ P W+W +    L  + ++ N+LT   
Sbjct:   396 RLEHCDISEFPNVFKTLHNLEYIALSNNRISGKFPEWLWSLP--RLSSVFITDNLLTGFE 453

Query:    63 -SIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLN 121
              S + L   ++Q L+LD+N L+G+LP LP  +      +N   G+IP S CN SS+  L+
Sbjct:   454 GSSEVLVNSSVQILSLDTNSLEGALPHLPLSINYFSAIDNRFGGDIPLSICNRSSLDVLD 513

Query:   122 LSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPS 181
             LS N+ SGQIP CL N  L  L L  NN +GSIP        L S  +  N L G LP S
Sbjct:   514 LSYNNFSGQIPPCLSN--LLYLKLRKNNLEGSIPDKYYVDTPLRSFDVGYNRLTGKLPRS 571

Query:   182 LINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI--PEC--LANSTLEI 237
             LINC  LQFL V +N +    P  L    +L  L + +N   GP+  P    L    L I
Sbjct:   572 LINCSALQFLSVDHNGIKDTFPFYLKALPKLQVLLLSSNEFYGPLSPPNQGPLGFPELRI 631

Query:   238 LDMRMNKFSGSLP 250
             L++  NK +GSLP
Sbjct:   632 LEIAGNKLTGSLP 644

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 98/253 (38%), Positives = 138/253 (54%)

Query:     9 TCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI---- 64
             +CNISEFP  LR Q  LE+LD+S NQI G++P W+W +    L+++ +S N         
Sbjct:   262 SCNISEFPKFLRNQTSLEYLDISANQIEGQVPEWLWSLP--ELRYVNISHNSFNGFEGPA 319

Query:    65 DHLPW-KNLQYLTLDSNLLQGSLPDLPP-HMVQLLISNNSLTGEIPSSFCNLSSIQYLNL 122
             D +   + L  L + SN+ Q   P LP   M  L  SNN  +GEIP + C L +++ L L
Sbjct:   320 DVIQGGRELLVLDISSNIFQDPFPLLPVVSMNYLFSSNNRFSGEIPKTICELDNLRILVL 379

Query:   123 SNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL 182
             SNN+ SG IP+C  N  L  L L  NN  G  P+  A   +L S  +  N   G LP SL
Sbjct:   380 SNNNFSGSIPRCFENLHLYVLHLRNNNLSGIFPE-EAISHHLQSFDVGHNLFSGELPKSL 438

Query:   183 INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI--P-ECLANSTLEILD 239
             INC +++FL+V +N ++   P  L     L  L + +N   GPI  P + L+ S L I D
Sbjct:   439 INCSDIEFLNVEDNRINDTFPSWLELLPNLQILVLRSNEFYGPIFSPGDSLSFSRLRIFD 498

Query:   240 MRMNKFSGSLPQN 252
             +  N+F+G LP +
Sbjct:   499 ISENRFTGVLPSD 511

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2040035 RLP20 "receptor like protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 9.0e-37, P = 9.0e-37
 Identities = 92/246 (37%), Positives = 141/246 (57%)

Query:    10 CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGV-HTLQFLILSQNVLT-SIDHL 67
             C + EFP+I +T  ++E +D+S N+I G+IP W+W + + H +  L  S +    S + L
Sbjct:   189 CGLKEFPNIFKTLKKMEAIDVSNNRINGKIPEWLWSLPLLHLVNILNNSFDGFEGSTEVL 248

Query:    68 PWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127
                +++ L L+SN  +G+LP LP  +      +N+ TGEIP S C  +S+  L+L+ N+L
Sbjct:   249 VNSSVRILLLESNNFEGALPSLPHSINAFSAGHNNFTGEIPLSICTRTSLGVLDLNYNNL 308

Query:   128 SGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVN 187
              G + QCL N T   ++L  NN +G+IP+T   G ++ +L +  N L G LP SL+NC +
Sbjct:   309 IGPVSQCLSNVTF--VNLRKNNLEGTIPETFIVGSSIRTLDVGYNRLTGKLPRSLLNCSS 366

Query:   188 LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI--PEC--LANSTLEILDMRMN 243
             L+FL V NN +    P  L    +L  L + +N   GPI  P    L    L IL++  N
Sbjct:   367 LEFLSVDNNRIKDTFPFWLKALPKLQVLTLSSNKFYGPISPPHQGPLGFPELRILEISDN 426

Query:   244 KFSGSL 249
             KF+GSL
Sbjct:   427 KFTGSL 432

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 96/257 (37%), Positives = 145/257 (56%)

Query:     7 VKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT---- 62
             +++CNI++FP+ +R    L+ LDLS N+I+G++P W+W +   TL  + LS N L+    
Sbjct:   525 LRSCNITDFPEFIRKGRNLQILDLSNNKIKGQVPDWLWRMP--TLNSVDLSNNSLSGFHV 582

Query:    63 SIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLI-SNNSLTGEIPSSFCNLSSIQYLN 121
             S+   P   L  + L SN  QG L  LP   ++    SNN+ TG+IP S C LSS++ L+
Sbjct:   583 SVKASPESQLTSVDLSSNAFQGPL-FLPSKSLRYFSGSNNNFTGKIPRSICGLSSLEILD 641

Query:   122 LSNNSLSGQIPQCLGN--STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLP 179
             LSNN+L+G +P CL    S+L  LDL  N+  GS+P+       L SL +S N +EG LP
Sbjct:   642 LSNNNLNGSLPWCLETLMSSLSDLDLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEGKLP 701

Query:   180 PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPEC----LANSTL 235
              SL  C +L+ L+VG+N ++   P  L +  +L  L + +N   G +            L
Sbjct:   702 GSLTGCSSLEVLNVGSNRINDMFPFELNSLQKLQVLVLHSNKFHGTLHNVDGVWFGFPQL 761

Query:   236 EILDMRMNKFSGSLPQN 252
             +I+D+  N F G LP +
Sbjct:   762 QIIDVSHNDFFGILPSD 778

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2829370 RLP40 "receptor like protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 97/251 (38%), Positives = 141/251 (56%)

Query:     6 QVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT--- 62
             +++ C+IS+FP++ +T H LE++ LS N+I G+ P W+W +    L  + ++ N+LT   
Sbjct:   428 RLEHCDISDFPNVFKTLHNLEYIALSNNRISGKFPEWLWSLP--RLSSVFITDNLLTGFE 485

Query:    63 -SIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLN 121
              S + L   ++Q L+LD+N L+G+LP LP  +      +N   G+IP S CN SS+  L+
Sbjct:   486 GSSEVLVNSSVQILSLDTNSLEGALPHLPLSINYFSAIDNRFGGDIPLSICNRSSLDVLD 545

Query:   122 LSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPS 181
             LS N+ +G IP CL N  L  L L  NN +GSIP    +   L SL +  N L G LP S
Sbjct:   546 LSYNNFTGPIPPCLSN--LLYLKLRKNNLEGSIPDKYYEDTPLRSLDVGYNRLTGKLPRS 603

Query:   182 LINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI--PE--CLANSTLEI 237
             LINC  LQFL V +N +    P  L    +L  L + +N   GP+  P    L    L I
Sbjct:   604 LINCSALQFLSVDHNGIKDTFPFSLKALPKLQVLLLSSNKFYGPLSPPNEGPLGFPELRI 663

Query:   238 LDMRMNKFSGS 248
             L++  NK +GS
Sbjct:   664 LEIAGNKLTGS 674

GO:0009507 "chloroplast" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_182000003 hypothetical protein (921 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	347
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-32
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-07
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-06
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	4e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-06
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	8e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  134 bits (340), Expect = 8e-35
 Identities = 103/303 (33%), Positives = 143/303 (47%), Gaps = 50/303 (16%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT-----SIDHLPWKNLQYLTLDS 79
           L  LDL  N + G IPS + ++    LQ+L L QN L+     SI  L  + L  L L  
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNLK--NLQYLFLYQNKLSGPIPPSIFSL--QKLISLDLSD 293

Query: 80  NLLQGSLPDLPPHMVQL----LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL 135
           N L G +P+L   +  L    L SNN  TG+IP +  +L  +Q L L +N  SG+IP+ L
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNN-FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Query: 136 G-NSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINC-----VNLQ 189
           G ++ L  LDL  NN  G IP+      NL  L L  N LEG +P SL  C     V LQ
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412

Query: 190 -------------------FLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL 230
                              FLD+ NNNL G I     +   L  L +  N   G +P+  
Sbjct: 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472

Query: 231 ANSTLEILDMRMNKFSGSLPQ-----------NICKKLCFGPLPPSLVNCQYLEVLDVGN 279
            +  LE LD+  N+FSG++P+            + +    G +P  L +C+ L  LD+ +
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 280 NQI 282
           NQ+
Sbjct: 533 NQL 535

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  133 bits (337), Expect = 2e-34
 Identities = 110/330 (33%), Positives = 156/330 (47%), Gaps = 51/330 (15%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHT-LQFLILSQNVLTSIDHLP-----WKNLQYLTLD 78
           LE LDLS N + G IP+   DIG  + L+ L L  NVL     +P       +L++LTL 
Sbjct: 142 LETLDLSNNMLSGEIPN---DIGSFSSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLA 196

Query: 79  SNLLQGSLP---------------------DLPPHMVQLLISN------NSLTGEIPSSF 111
           SN L G +P                     ++P  +  L   N      N+LTG IPSS 
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256

Query: 112 CNLSSIQYLNLSNNSLSGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGCNLTSLRLS 170
            NL ++QYL L  N LSG IP  + +   L +LDL  N+  G IP+   +  NL  L L 
Sbjct: 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316

Query: 171 GNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL 230
            N+  G +P +L +   LQ L + +N  SG IP+ LG    L+ LD+  N+L+G IPE L
Sbjct: 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376

Query: 231 ANS-TLEILDMRMNKFSGSLPQNI--CKKL---------CFGPLPPSLVNCQYLEVLDVG 278
            +S  L  L +  N   G +P+++  C+ L           G LP        +  LD+ 
Sbjct: 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436

Query: 279 NNQIDDTFLYWLDVLLQLQVLILRSNRFWG 308
           NN +          +  LQ+L L  N+F+G
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFG 466

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  128 bits (324), Expect = 9e-33
 Identities = 92/248 (37%), Positives = 123/248 (49%), Gaps = 17/248 (6%)

Query: 14  EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP----- 68
           E P  L   + L  LDLS N + G IP  +   G   L  LIL  N L     +P     
Sbjct: 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG--NLFKLILFSNSLE--GEIPKSLGA 402

Query: 69  WKNLQYLTLDSNLLQGSLPD----LPPHMVQLL-ISNNSLTGEIPSSFCNLSSIQYLNLS 123
            ++L+ + L  N   G LP     LP  +V  L ISNN+L G I S   ++ S+Q L+L+
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLP--LVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460

Query: 124 NNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI 183
            N   G +P   G+  LE LDL  N F G++P+       L  L+LS N L G +P  L 
Sbjct: 461 RNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520

Query: 184 NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRM 242
           +C  L  LD+ +N LSG IP        LS LD+  N LSG IP+ L N  +L  +++  
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580

Query: 243 NKFSGSLP 250
           N   GSLP
Sbjct: 581 NHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  126 bits (319), Expect = 4e-32
 Identities = 108/313 (34%), Positives = 149/313 (47%), Gaps = 43/313 (13%)

Query: 17  DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLT 76
           DI  T   L +L+LS N   G IP                          +P  NL+ L 
Sbjct: 112 DIFTTSSSLRYLNLSNNNFTGSIPR-----------------------GSIP--NLETLD 146

Query: 77  LDSNLLQGSLPD---LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ 133
           L +N+L G +P+       +  L +  N L G+IP+S  NL+S+++L L++N L GQIP+
Sbjct: 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206

Query: 134 CLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLD 192
            LG   +L+ + LG NN  G IP       +L  L L  N+L GP+P SL N  NLQ+L 
Sbjct: 207 ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266

Query: 193 VGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQ 251
           +  N LSGPIP  + +  +L  LD+ +NSLSG IPE +     LEIL +  N F+G +P 
Sbjct: 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Query: 252 NIC------------KKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVL 299
            +              K   G +P +L     L VLD+  N +       L     L  L
Sbjct: 327 ALTSLPRLQVLQLWSNKFS-GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385

Query: 300 ILRSNRFWGPIGK 312
           IL SN   G I K
Sbjct: 386 ILFSNSLEGEIPK 398

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  125 bits (315), Expect = 1e-31
 Identities = 98/291 (33%), Positives = 146/291 (50%), Gaps = 38/291 (13%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQG 84
           ++ ++LS NQ+ G IP                  ++ T+       +L+YL L +N   G
Sbjct: 95  IQTINLSNNQLSGPIP-----------------DDIFTTS-----SSLRYLNLSNNNFTG 132

Query: 85  SLPD-LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLET 142
           S+P    P++  L +SNN L+GEIP+   + SS++ L+L  N L G+IP  L N ++LE 
Sbjct: 133 SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192

Query: 143 LDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPI 202
           L L  N   G IP+   +  +L  + L  N+L G +P  +    +L  LD+  NNL+GPI
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Query: 203 PECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEI-LDMRMNKFSGSLPQNICKKLCFGP 261
           P  LGN   L +L +  N LSGPIP  + +    I LD+  N  SG +P+ + +      
Sbjct: 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ------ 306

Query: 262 LPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGK 312
                   Q LE+L + +N         L  L +LQVL L SN+F G I K
Sbjct: 307 -------LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  122 bits (308), Expect = 1e-30
 Identities = 87/233 (37%), Positives = 125/233 (53%), Gaps = 14/233 (6%)

Query: 91  PHMVQLLISNNSLTGEIPSS-FCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNN 149
           P++  + +SNN L+G IP   F   SS++YLNLSNN+ +G IP+      LETLDL  N 
Sbjct: 93  PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI-PNLETLDLSNNM 151

Query: 150 FQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNS 209
             G IP       +L  L L GN L G +P SL N  +L+FL + +N L G IP  LG  
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 210 TRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNI--CKKLCF------- 259
             L ++ +G N+LSG IP  +   ++L  LD+  N  +G +P ++   K L +       
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 260 --GPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI 310
             GP+PPS+ + Q L  LD+ +N +       +  L  L++L L SN F G I
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.4 bits (219), Expect = 4e-19
 Identities = 66/214 (30%), Positives = 99/214 (46%), Gaps = 16/214 (7%)

Query: 113 NLSSIQYLNLSNNSLSGQI-PQCLGNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLS 170
           N S +  ++LS  ++SG+I         ++T++L  N   G IP        +L  L LS
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 171 GNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL 230
            N+  G +P   I    L+ LD+ NN LSG IP  +G+ + L  LD+G N L G IP  L
Sbjct: 127 NNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 231 AN-STLEILDMRMNKFSGSLPQNICK----KLCF-------GPLPPSLVNCQYLEVLDVG 278
            N ++LE L +  N+  G +P+ + +    K  +       G +P  +     L  LD+ 
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244

Query: 279 NNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGK 312
            N +       L  L  LQ L L  N+  GPI  
Sbjct: 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 87.2 bits (216), Expect = 1e-18
 Identities = 65/190 (34%), Positives = 95/190 (50%), Gaps = 14/190 (7%)

Query: 27  WLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS--IDHLPWKNLQYLTLDSNLLQG 84
           +LD+S N ++GRI S  WD+   +LQ L L++N       D    K L+ L L  N   G
Sbjct: 432 FLDISNNNLQGRINSRKWDMP--SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG 489

Query: 85  SLPD---LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STL 140
           ++P        ++QL +S N L+GEIP    +   +  L+LS+N LSGQIP        L
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

Query: 141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG 200
             LDL  N   G IP+      +L  + +S NHL G LP +        FL +  + ++G
Sbjct: 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST------GAFLAINASAVAG 603

Query: 201 PIPECLGNST 210
            I  C G++T
Sbjct: 604 NIDLCGGDTT 613

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.8 bits (171), Expect = 4e-13
 Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 145 LGMNN--FQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPI 202
           LG++N   +G IP   +K  +L S+ LSGN + G +PPSL +  +L+ LD+  N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 203 PECLGNSTRLSFLDVGNNSLSGPIPECL 230
           PE LG  T L  L++  NSLSG +P  L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 3e-12
 Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 33/141 (23%)

Query: 96  LLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLGMNNFQGSI 154
           L + N  L G IP+    L  +Q +NLS NS+ G IP  LG+ ++LE LDL  N+F GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 155 PQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLG----NST 210
           P++  +   LTSLR+                     L++  N+LSG +P  LG    +  
Sbjct: 483 PESLGQ---LTSLRI---------------------LNLNGNSLSGRVPAALGGRLLHRA 518

Query: 211 RLSFLDVGNNSLSG--PIPEC 229
             +F D  N  L G   +  C
Sbjct: 519 SFNFTD--NAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 7e-12
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 19/119 (15%)

Query: 75  LTLDSNLLQGSLPDLPP---HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQI 131
           L LD+  L+G +P+      H+  + +S NS+ G IP S  +++S++ L+LS NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 132 PQCLGNST-LETLDLGMNNFQGSIPQT---------------NAKGCNLTSLRLSGNHL 174
           P+ LG  T L  L+L  N+  G +P                 NA  C +  LR  G HL
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHL 541

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.0 bits (145), Expect = 5e-10
 Identities = 73/241 (30%), Positives = 111/241 (46%), Gaps = 7/241 (2%)

Query: 19  LRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLD 78
           L     L  LDL+ N++R  I   +    + +L     +   +  +  L   NL+ L L 
Sbjct: 89  LLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS 148

Query: 79  SNLLQGSLPDL--PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG 136
            N ++     L   P++  L +S N L+ ++P    NLS++  L+LS N +S   P+   
Sbjct: 149 DNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIEL 207

Query: 137 NSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNN 196
            S LE LDL  NN    +  + +   NL+ L LS N LE  LP S+ N  NL+ LD+ NN
Sbjct: 208 LSALEELDLS-NNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265

Query: 197 NLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKK 256
            +S      LG+ T L  LD+  NSLS  +P       L  L + +     +L   +   
Sbjct: 266 QIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSI 323

Query: 257 L 257
           L
Sbjct: 324 L 324

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 167 LRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI 226
           L L    L G +P  +    +LQ +++  N++ G IP  LG+ T L  LD+  NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 227 PECLANST-LEILDMRMNKFSGSLP 250
           PE L   T L IL++  N  SG +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 66/248 (26%), Positives = 107/248 (43%), Gaps = 29/248 (11%)

Query: 15  FPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQY 74
           FPDI      + WLDL +  I    PS   ++ +  L  LIL +     +    W+ +Q 
Sbjct: 720 FPDISTN---ISWLDLDETAIE-EFPS---NLRLENLDELILCEMKSEKL----WERVQP 768

Query: 75  LTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQC 134
           LT         +  L P + +L +S+     E+PSS  NL  +++L + N      +P  
Sbjct: 769 LT-------PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821

Query: 135 LGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDV- 193
           +   +LE+LDL   +   + P  +    N++ L LS   +E  +P  +    NL FLD+ 
Sbjct: 822 INLESLESLDLSGCSRLRTFPDIST---NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMN 877

Query: 194 GNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNI 253
           G NNL         N ++L  L+  + S  G + E   N +   + M  +     LP  +
Sbjct: 878 GCNNLQRVSL----NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTV 933

Query: 254 CKKL--CF 259
           C     CF
Sbjct: 934 CINFINCF 941

syringae 6; Provisional. Length = 1153

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 19/201 (9%)

Query: 54  LILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLL-ISNNSLTGEIPSSFC 112
           LIL  N L S+      N++ L  +SN L  S+P   P  +Q + +S N +T E+P    
Sbjct: 204 LILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLPDTIQEMELSINRIT-ELPERLP 261

Query: 113 NLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGN 172
             S++Q L+L +N +S  +P+ L    L  L +  N+ + ++P     G  +T L +  N
Sbjct: 262 --SALQSLDLFHNKISC-LPENLPEE-LRYLSVYDNSIR-TLPAHLPSG--ITHLNVQSN 314

Query: 173 HLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN 232
            L   LP +L     L+ L+ G N L+  +P  L     L  LDV  N ++  +PE L  
Sbjct: 315 SLTA-LPETLP--PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP- 366

Query: 233 STLEILDMRMNKFSGSLPQNI 253
            T+  LD+  N  + +LP+N+
Sbjct: 367 PTITTLDVSRNALT-NLPENL 386

Length = 754

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 63/223 (28%), Positives = 106/223 (47%), Gaps = 55/223 (24%)

Query: 61  LTSIDHLPWKNLQYLTLDSNLLQGSLPD-LPPHMVQLLISNNSLTGEIPSSFCNLSSIQY 119
           LT+I     + +  L LD+N L+ SLP+ L  ++  L  ++N LT  IP++  +  +IQ 
Sbjct: 190 LTTIPACIPEQITTLILDNNELK-SLPENLQGNIKTLYANSNQLT-SIPATLPD--TIQE 245

Query: 120 LNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLP 179
           + LS N ++ ++P+ L  S L++LDL  N     +P+   +                   
Sbjct: 246 MELSINRIT-ELPERL-PSALQSLDLFHNKIS-CLPENLPEE------------------ 284

Query: 180 PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILD 239
                   L++L V +N++   +P  L +   ++ L+V +NSL+  +PE L    L+ L+
Sbjct: 285 --------LRYLSVYDNSIRT-LPAHLPSG--ITHLNVQSNSLTA-LPETLP-PGLKTLE 331

Query: 240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI 282
              N  + SLP +         LPP       L+VLDV  NQI
Sbjct: 332 AGENALT-SLPAS---------LPPE------LQVLDVSKNQI 358

Length = 754

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 73/276 (26%), Positives = 108/276 (39%), Gaps = 49/276 (17%)

Query: 71  NLQYLTLDSNLL-QGSLPDL------PPHMVQLLISNNSLTGEIPSS-------FCNLSS 116
            LQ L L+ N L + +   L       P + +L +S N  TG IP               
Sbjct: 24  CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCG 82

Query: 117 IQYLNLSNNSLS----GQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKG-----CNLTSL 167
           +Q L+LS+N+L     G +   L +S+L+ L L  N       +  AKG       L  L
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142

Query: 168 RLSGNHLEG----PLPPSLINCVNLQFLDVGNNNLSGP----IPECLGNSTRLSFLDVGN 219
            L  N LEG     L  +L    +L+ L++ NN +       + E L  +  L  LD+ N
Sbjct: 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202

Query: 220 NSL----SGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEV 274
           N L    +  + E LA   +LE+L++  N  + +    +   L          N   L  
Sbjct: 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL-------LSPNIS-LLT 254

Query: 275 LDVGNNQIDD----TFLYWLDVLLQLQVLILRSNRF 306
           L +  N I D         L     L  L LR N+F
Sbjct: 255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 47.4 bits (112), Expect = 8e-06
 Identities = 70/270 (25%), Positives = 114/270 (42%), Gaps = 75/270 (27%)

Query: 3   IKT-QVKTCNISEFPDILRTQHQLEWLDLSKNQIRG---RIPSWMWDIGVHTLQFLILSQ 58
           IKT    +  ++  P  L     ++ ++LS N+I     R+PS         LQ L L  
Sbjct: 222 IKTLYANSNQLTSIPATL--PDTIQEMELSINRITELPERLPS--------ALQSLDLFH 271

Query: 59  NVLTSI-DHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSI 117
           N ++ + ++LP + L+YL++  N ++     LP  +  L + +NSLT             
Sbjct: 272 NKISCLPENLP-EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT------------- 317

Query: 118 QYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGP 177
                   +L   +P       L+TL+ G N               LTSL  S       
Sbjct: 318 --------ALPETLPP-----GLKTLEAGEN--------------ALTSLPAS------- 343

Query: 178 LPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEI 237
           LPP       LQ LDV  N ++  +PE L  +  ++ LDV  N+L+  +PE L  + L+I
Sbjct: 344 LPPE------LQVLDVSKNQIT-VLPETLPPT--ITTLDVSRNALTN-LPENLP-AALQI 392

Query: 238 LDMRMNKFSGSLPQNICKKLCFGPLPPSLV 267
           +    N     LP+++      GP P  ++
Sbjct: 393 MQASRNNLV-RLPESLPHFRGEGPQPTRII 421

Length = 754

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 59/255 (23%), Positives = 92/255 (36%), Gaps = 66/255 (25%)

Query: 50  TLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGE--- 106
           +LQ L L+ N L     L             LL   L DLPP + +L++  N L G    
Sbjct: 109 SLQELKLNNNGL-GDRGLR------------LLAKGLKDLPPALEKLVLGRNRLEGASCE 155

Query: 107 -IPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-----NSTLETLDLGMNNFQGSIPQTNAK 160
            +  +      ++ LNL+NN +     + L      N  LE LDL  N           +
Sbjct: 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL-------TDE 208

Query: 161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPI-----PECLGNSTRLSFL 215
           G +  +  L+                +L+ L++G+NNL+           L  +  L  L
Sbjct: 209 GASALAETLASL-------------KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255

Query: 216 DVGNN--------SLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLV 267
            +  N         L+  + E     +L  LD+R NKF     Q + + L        L 
Sbjct: 256 SLSCNDITDDGAKDLAEVLAE---KESLLELDLRGNKFGEEGAQLLAESL--------LE 304

Query: 268 NCQYLEVLDVGNNQI 282
               LE L V ++  
Sbjct: 305 PGNELESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 68/236 (28%), Positives = 100/236 (42%), Gaps = 17/236 (7%)

Query: 48  VHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLT-GE 106
            +      ++ N   S       N   L L SN L      L   +   L+S + ++  +
Sbjct: 25  TYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLD 84

Query: 107 IPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTS 166
              +  NL  +  L+L+ N L   I + L  + L +LDL  NN     P       NL  
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKE 144

Query: 167 LRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI 226
           L LS N +E  LP  L N  NL+ LD+  N+LS  +P+ L N + L+ LD+  N +S   
Sbjct: 145 LDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDLP 202

Query: 227 PECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI 282
           PE    S LE LD+  N                  L  SL N + L  L++ NN++
Sbjct: 203 PEIELLSALEELDLSNNSII--------------ELLSSLSNLKNLSGLELSNNKL 244

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 191 LDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSL 249
           L + N  L G IP  +     L  +++  NS+ G IP  L + ++LE+LD+  N F+GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 250 PQNI 253
           P+++
Sbjct: 483 PESL 486

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 71  NLQYLTLDSNLL----QGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126
           NL+ L L +N L     G+   LP ++  L +S N+LT   P +F  L S++ L+LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLP-NLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 127 L 127
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 96  LLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST-LETLDLGMNNF 150
           L +SNN LT     +F  L +++ L+LS N+L+   P+       L +LDL  NN 
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 22/60 (36%), Positives = 28/60 (46%)

Query: 163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSL 222
           NL SL LS N L      +     NL+ LD+  NNL+   PE       L  LD+  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.84
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.82
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.79
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.54
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.36
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.33
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.3
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.99
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.8
PLN03150	623	hypothetical protein; Provisional	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.71
PLN03150	623	hypothetical protein; Provisional	98.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.67
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.59
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.52
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.49
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.48
KOG4341	483	consensus F-box protein containing LRR [General fu	98.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.4
PRK15386	426	type III secretion protein GogB; Provisional	98.21
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.2
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.16
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.14
PRK15386	426	type III secretion protein GogB; Provisional	98.11
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.11
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.01
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.01
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
KOG4341	483	consensus F-box protein containing LRR [General fu	97.96
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.9
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.83
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.73
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.18
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.11
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.0
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.94
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.86
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.66
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.37
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.79
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.32
KOG4308	478	consensus LRR-containing protein [Function unknown	95.03
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.35
KOG4308	478	consensus LRR-containing protein [Function unknown	94.02
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.57
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.31
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.07
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.85
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.63
smart00370	26	LRR Leucine-rich repeats, outliers.	91.42
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.42
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	88.63
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	82.61
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	80.75

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.7e-32  Score=269.75  Aligned_cols=251  Identities=37%  Similarity=0.557  Sum_probs=183.1

Q ss_pred             CceEEEecCCCCC-CCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCC-CCCCCCCCCcEEEcc
Q 040206            1 KTIKTQVKTCNIS-EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS-IDHLPWKNLQYLTLD   78 (347)
Q Consensus         1 ~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~L~~L~l~   78 (347)
                      +++.|+++++.+. .++.++..+++|+.|++++|.+.+.+|..++. .+++|++|++++|.+++ ++...+++|++|+++
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls  148 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT-TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS  148 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhc-cCCCCCEEECcCCccccccCccccCCCCEEECc
Confidence            3678999999888 67788999999999999999998888888774 45899999999998864 344667888888888


Q ss_pred             CCCCCccCCC---CCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccccc
Q 040206           79 SNLLQGSLPD---LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSI  154 (347)
Q Consensus        79 ~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~  154 (347)
                      +|.+.+..+.   .+++|++|++++|.+....|..+.++++|++|++++|.+.+..+..+ .+.+|+.|++++|.+....
T Consensus       149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  228 (968)
T PLN00113        149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI  228 (968)
T ss_pred             CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence            8887754443   24788888888888777777778888888888888887765554443 4567777777777776667


Q ss_pred             CccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-cc
Q 040206          155 PQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NS  233 (347)
Q Consensus       155 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~  233 (347)
                      |..+..+++|++|++++|.++...|..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+. .+
T Consensus       229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  308 (968)
T PLN00113        229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ  308 (968)
T ss_pred             ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence            77777777777777777777666666677777777777777776666666666666777777766666655444332 25


Q ss_pred             CCcEEEcccCcccccCChh
Q 040206          234 TLEILDMRMNKFSGSLPQN  252 (347)
Q Consensus       234 ~L~~L~L~~~~~~~~~~~~  252 (347)
                      +|+.|++++|.+.+.+|..
T Consensus       309 ~L~~L~l~~n~~~~~~~~~  327 (968)
T PLN00113        309 NLEILHLFSNNFTGKIPVA  327 (968)
T ss_pred             CCcEEECCCCccCCcCChh
Confidence            5666666666665544443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.6e-32  Score=269.91  Aligned_cols=324  Identities=31%  Similarity=0.454  Sum_probs=208.0

Q ss_pred             CceEEEecCCCCC-CCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEE
Q 040206            1 KTIKTQVKTCNIS-EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLT   76 (347)
Q Consensus         1 ~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~   76 (347)
                      +|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|..+..+  ++|+.|++++|.+++..+   ..+++|++|+
T Consensus       213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  290 (968)
T PLN00113        213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL--KNLQYLFLYQNKLSGPIPPSIFSLQKLISLD  290 (968)
T ss_pred             CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC--CCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence            3567777777776 677777777777777777777776666666544  777777777776654322   3456667777


Q ss_pred             ccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccc
Q 040206           77 LDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQG  152 (347)
Q Consensus        77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~  152 (347)
                      +++|.+.+..+..   +++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|.+.+
T Consensus       291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~  370 (968)
T PLN00113        291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG  370 (968)
T ss_pred             CcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence            7666665444332   3566666666666655555556666666666666665554333322 23455555555555443


Q ss_pred             ------------------------ccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccC
Q 040206          153 ------------------------SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGN  208 (347)
Q Consensus       153 ------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~  208 (347)
                                              ..|..+..+++|+.+++++|.++...|..+..++.|+.|++++|.+.+..+..+..
T Consensus       371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  450 (968)
T PLN00113        371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD  450 (968)
T ss_pred             eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc
Confidence                                    34444444555555555555555445555555666666666666665555555556


Q ss_pred             CCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhcc-----------ccccCCCcCccCCCCCcEEEc
Q 040206          209 STRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKK-----------LCFGPLPPSLVNCQYLEVLDV  277 (347)
Q Consensus       209 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~L~~L~L  277 (347)
                      +++|+.|++++|.+.+..+.....++|+.|++++|.+.+.+|..+...           .-.+.+|..+..+++|++|++
T Consensus       451 l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  530 (968)
T PLN00113        451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL  530 (968)
T ss_pred             CCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence            666666666666666555555555677888888888877777655432           122356677788888888888


Q ss_pred             cCCccCCccchhhhhccCCCEEEcccceeecccCCccccceeeeeeEee
Q 040206          278 GNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHFIVRTV  326 (347)
Q Consensus       278 ~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~~~~~~~~~  326 (347)
                      ++|.+++..+..+..+++|+.|+|++|++.+.+|..+.....+..+...
T Consensus       531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  579 (968)
T PLN00113        531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS  579 (968)
T ss_pred             CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence            8888888888888888888888888888888888877776655554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=6.3e-32  Score=233.77  Aligned_cols=302  Identities=23%  Similarity=0.175  Sum_probs=209.0

Q ss_pred             ceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCCh-hhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEE
Q 040206            2 TIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPS-WMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLT   76 (347)
Q Consensus         2 l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~   76 (347)
                      +++|+|.+|.++.+. +.++.++.|+.||++.|.|+ .++. .+..-  .++++|+|++|.|+++..   ..+.+|..|.
T Consensus       127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~--~ni~~L~La~N~It~l~~~~F~~lnsL~tlk  203 (873)
T KOG4194|consen  127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAK--VNIKKLNLASNRITTLETGHFDSLNSLLTLK  203 (873)
T ss_pred             eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCC--CCceEEeeccccccccccccccccchheeee
Confidence            345555555555444 25555555555555555555 3322 22221  456666666666665554   2334555666


Q ss_pred             ccCCCCCccCCCCC---CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccc
Q 040206           77 LDSNLLQGSLPDLP---PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQG  152 (347)
Q Consensus        77 l~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~  152 (347)
                      ++.|.++..+...+   ++|+.|++..|.+.......|.++++|+.|.+..|.+.......| ++..+++|+++.|.+..
T Consensus       204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA  283 (873)
T ss_pred             cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence            66666665554443   566677777777764446667777777777777777766555544 56678888888888776


Q ss_pred             ccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-
Q 040206          153 SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-  231 (347)
Q Consensus       153 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-  231 (347)
                      ....++.+++.|+.|+++.|.+..+.+..+..+++|+.|++++|++....+..|..+..|++|+++.|.+.......+. 
T Consensus       284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~  363 (873)
T KOG4194|consen  284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG  363 (873)
T ss_pred             hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence            7777777888888888888888777777788888888888888888777777777888888888888877644333333 


Q ss_pred             ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206          232 NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG  311 (347)
Q Consensus       232 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~  311 (347)
                      .++|++|||++|.+...+.+          -...|.++++|++|++.||++..+....|.++++|++|||.+|++-.--+
T Consensus       364 lssL~~LdLr~N~ls~~IED----------aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~  433 (873)
T KOG4194|consen  364 LSSLHKLDLRSNELSWCIED----------AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQP  433 (873)
T ss_pred             hhhhhhhcCcCCeEEEEEec----------chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecc
Confidence            37899999999988864433          33468889999999999999998888999999999999999999876544


Q ss_pred             Ccccc
Q 040206          312 KLRSR  316 (347)
Q Consensus       312 ~~~~~  316 (347)
                      +-+..
T Consensus       434 nAFe~  438 (873)
T KOG4194|consen  434 NAFEP  438 (873)
T ss_pred             ccccc
Confidence            44443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=9.3e-31  Score=226.57  Aligned_cols=298  Identities=23%  Similarity=0.202  Sum_probs=231.9

Q ss_pred             ceEEEecCCCCCC-CChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEc
Q 040206            2 TIKTQVKTCNISE-FPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTL   77 (347)
Q Consensus         2 l~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l   77 (347)
                      .+.|++++|.+.. -+..|.++++|+.+++..|.++ .+|......  .+|+.|+|.+|.|+.+..   ..++.|+.|++
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~s--ghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHES--GHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccc--cceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            4578999999984 4467889999999999998887 888776654  679999999998888877   45578999999


Q ss_pred             cCCCCCccCCCCC---CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccC-CccccEEECCCCccccc
Q 040206           78 DSNLLQGSLPDLP---PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLGMNNFQGS  153 (347)
Q Consensus        78 ~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~  153 (347)
                      +.|.++......+   .++++|++++|.|+......|.++.+|.+|.++.|.++..+...|. ++.|+.|++..|.+...
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            9999887655554   5799999999999988888899999999999999999877777775 78899999999888644


Q ss_pred             cCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccc-
Q 040206          154 IPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-  232 (347)
Q Consensus       154 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-  232 (347)
                      -...|..++.|+.+.+.+|.+......+|..+.++++|++..|++...-..++..++.|+.|++++|.|.......... 
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            4667888888888888888887666667888888888888888887666677888888888888888877654443333 


Q ss_pred             cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCC
Q 040206          233 STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGK  312 (347)
Q Consensus       233 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~  312 (347)
                      ++|+.|+|++|.++..-+             ..|..+..|++|+|++|+++..-...|..+++|+.|||+.|.+.+.+-+
T Consensus       317 qkL~~LdLs~N~i~~l~~-------------~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDE-------------GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             ccceeEeccccccccCCh-------------hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence            788888888888884322             2455666777777777777665556666777777777777777665554


Q ss_pred             ccc
Q 040206          313 LRS  315 (347)
Q Consensus       313 ~~~  315 (347)
                      ...
T Consensus       384 aa~  386 (873)
T KOG4194|consen  384 AAV  386 (873)
T ss_pred             chh
Confidence            433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.93  E-value=3.8e-28  Score=212.46  Aligned_cols=303  Identities=26%  Similarity=0.327  Sum_probs=174.3

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCC--CCC--CCCCCCcEEEcc
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS--IDH--LPWKNLQYLTLD   78 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~--~~~~~L~~L~l~   78 (347)
                      ++|.|....+..+|+.++.+.+|++|++++|++.... ..+.  .++.||.+.++.|++.+  ++.  ..+..|+.|+++
T Consensus        35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs--~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS  111 (1255)
T KOG0444|consen   35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH-GELS--DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS  111 (1255)
T ss_pred             eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh-hhhc--cchhhHHHhhhccccccCCCCchhcccccceeeecc
Confidence            4444444444455544555555555555554444211 1122  22555555555554433  222  344566666777


Q ss_pred             CCCCCccCCCC--CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCc
Q 040206           79 SNLLQGSLPDL--PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQ  156 (347)
Q Consensus        79 ~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  156 (347)
                      .|++...+..+  .+++-.|++++|+|..+....|.++..|-.|++++|.+...+|..-.+..|++|.+++|.+.+.--.
T Consensus       112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr  191 (1255)
T KOG0444|consen  112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR  191 (1255)
T ss_pred             hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence            66666444333  2566667777777664444445566666677777776665555555556677777777766543334


Q ss_pred             cCCCCCCccEEEccCCccc-CCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCC
Q 040206          157 TNAKGCNLTSLRLSGNHLE-GPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTL  235 (347)
Q Consensus       157 ~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  235 (347)
                      .+..++.|+.|.+++.+-+ ..+|..+..+.+|..+|++.|++. ..|+.+-.+++|+.|++++|.+++.....-...+|
T Consensus       192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~l  270 (1255)
T KOG0444|consen  192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENL  270 (1255)
T ss_pred             cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhh
Confidence            4445555666666554332 345566666677777777777766 56677777777777777777776544433334566


Q ss_pred             cEEEcccCcccccCChhhhcc-----------------------------------ccccCCCcCccCCCCCcEEEccCC
Q 040206          236 EILDMRMNKFSGSLPQNICKK-----------------------------------LCFGPLPPSLVNCQYLEVLDVGNN  280 (347)
Q Consensus       236 ~~L~L~~~~~~~~~~~~~~~~-----------------------------------~~~~~l~~~~~~~~~L~~L~L~~n  280 (347)
                      +.|+++.|+++ ..|..+|++                                   ..+.-+|..+..|++|+.|.|+.|
T Consensus       271 EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N  349 (1255)
T KOG0444|consen  271 ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN  349 (1255)
T ss_pred             hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc
Confidence            66666666666 455555553                                   344445556666666777777777


Q ss_pred             ccCCccchhhhhccCCCEEEcccceeecccC
Q 040206          281 QIDDTFLYWLDVLLQLQVLILRSNRFWGPIG  311 (347)
Q Consensus       281 ~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~  311 (347)
                      ++.. .|+.+.-++.|+.||+.+|+-.-..|
T Consensus       350 rLiT-LPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  350 RLIT-LPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             ceee-chhhhhhcCCcceeeccCCcCccCCC
Confidence            6653 55556666777777777777554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=2.9e-25  Score=194.56  Aligned_cols=298  Identities=22%  Similarity=0.285  Sum_probs=236.0

Q ss_pred             eEEEecCCCCC--CCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEcc
Q 040206            3 IKTQVKTCNIS--EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLD   78 (347)
Q Consensus         3 ~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~   78 (347)
                      +-+|+++|.++  .+|..+..|++++.|.+...++. .+|..+..+  .+|++|.+++|++..+..  ..++.|+.+.+.
T Consensus        10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~l--qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R   86 (1255)
T KOG0444|consen   10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRL--QKLEHLSMAHNQLISVHGELSDLPRLRSVIVR   86 (1255)
T ss_pred             ecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHH--hhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence            55789999988  99999999999999999999998 899999876  999999999999888766  778999999999


Q ss_pred             CCCCC--ccCCCCC--CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccc
Q 040206           79 SNLLQ--GSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGS  153 (347)
Q Consensus        79 ~~~~~--~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~  153 (347)
                      +|++.  +++...+  ..|+.|++++|+++ ..|..+.+-+++..|+++.|+|..++...+ .+..|-.|++++|.+. .
T Consensus        87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~  164 (1255)
T KOG0444|consen   87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-M  164 (1255)
T ss_pred             ccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-h
Confidence            99875  4555554  78999999999999 778888888999999999999986666554 5568889999999987 7


Q ss_pred             cCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCccc-CCCCccccCCCCCCeEEecCCccccCcCccccc
Q 040206          154 IPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLS-GPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN  232 (347)
Q Consensus       154 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  232 (347)
                      +|.....+..|++|.+++|.+.-.-...+..+++|+.|.+++.+-+ ..+|..+..+.+|+.++++.|.+.....-....
T Consensus       165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l  244 (1255)
T KOG0444|consen  165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL  244 (1255)
T ss_pred             cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhh
Confidence            8888899999999999999986444445566778888899887543 567889999999999999999988544444555


Q ss_pred             cCCcEEEcccCcccccCChhhhcc----------ccccCCCcCccCCCCCcEEEccCCccC-CccchhhhhccCCCEEEc
Q 040206          233 STLEILDMRMNKFSGSLPQNICKK----------LCFGPLPPSLVNCQYLEVLDVGNNQID-DTFLYWLDVLLQLQVLIL  301 (347)
Q Consensus       233 ~~L~~L~L~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~l~L  301 (347)
                      .+|+.|+|++|+|+.. .-....+          .++..+|.++.++++|+.|++.+|+++ +..|..++.+..|+.+..
T Consensus       245 ~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a  323 (1255)
T KOG0444|consen  245 RNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA  323 (1255)
T ss_pred             hhhheeccCcCceeee-eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence            8999999999999842 1111111          355556666666666666666666654 234455666666666666


Q ss_pred             cccee
Q 040206          302 RSNRF  306 (347)
Q Consensus       302 ~~n~~  306 (347)
                      ++|.+
T Consensus       324 anN~L  328 (1255)
T KOG0444|consen  324 ANNKL  328 (1255)
T ss_pred             hcccc
Confidence            65554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=8.4e-22  Score=183.65  Aligned_cols=262  Identities=27%  Similarity=0.250  Sum_probs=206.5

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCCCC
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLL   82 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~   82 (347)
                      ..|+++++.++.+|..+.  ++|+.|++.+|+++ .+|..     .++|++|++++|.++.++. ..++|+.|++++|.+
T Consensus       204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~l-----p~~Lk~LdLs~N~LtsLP~-lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPAL-----PPELRTLEVSGNQLTSLPV-LPPGLLELSIFSNPL  274 (788)
T ss_pred             cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCCC-----CCCCcEEEecCCccCcccC-cccccceeeccCCch
Confidence            578999999999998776  58999999999998 56643     2899999999999998875 357999999999998


Q ss_pred             CccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCC
Q 040206           83 QGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC  162 (347)
Q Consensus        83 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  162 (347)
                      ... +..+..|+.|++++|.++ .+|.   .+++|+.|++++|.+...+. .  ...|+.|++++|.+. .+|..   ..
T Consensus       275 ~~L-p~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~-l--p~~L~~L~Ls~N~L~-~LP~l---p~  342 (788)
T PRK15387        275 THL-PALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPA-L--PSELCKLWAYNNQLT-SLPTL---PS  342 (788)
T ss_pred             hhh-hhchhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCC-C--cccccccccccCccc-ccccc---cc
Confidence            754 346688999999999988 3443   34789999999999886432 1  346889999999887 45532   35


Q ss_pred             CccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEccc
Q 040206          163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRM  242 (347)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~  242 (347)
                      +|+.|++++|+++ .+|..   ..+|+.|++++|.+.. +|..   ..+|+.|++++|.+++.. ..  .++|+.|++++
T Consensus       343 ~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP-~l--~s~L~~LdLS~  411 (788)
T PRK15387        343 GLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLP-VL--PSELKELMVSG  411 (788)
T ss_pred             ccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCC-Cc--ccCCCEEEccC
Confidence            7999999999998 44432   3578889999998874 4543   357999999999988533 22  26899999999


Q ss_pred             CcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCcc
Q 040206          243 NKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLR  314 (347)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~  314 (347)
                      |.+..              +|..   ..+|+.|++++|.++. +|..+..++.|+.|+|++|++.+..+..+
T Consensus       412 N~Lss--------------IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        412 NRLTS--------------LPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CcCCC--------------CCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            99983              4432   2468889999999985 66778899999999999999998877654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.88  E-value=2.3e-25  Score=185.25  Aligned_cols=107  Identities=31%  Similarity=0.430  Sum_probs=84.8

Q ss_pred             CCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhcc----------ccccCCCcC-ccCC
Q 040206          201 PIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKK----------LCFGPLPPS-LVNC  269 (347)
Q Consensus       201 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~----------~~~~~l~~~-~~~~  269 (347)
                      ..|..++.+++|..|++++|.+.+...+......|+.++++.|.|. .+|..+...          .+.+.++.. +..+
T Consensus       426 fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm  504 (565)
T KOG0472|consen  426 FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNM  504 (565)
T ss_pred             cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence            4455667888899999999888866666666667999999999887 566655442          566677665 7889


Q ss_pred             CCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecc
Q 040206          270 QYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP  309 (347)
Q Consensus       270 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~  309 (347)
                      .+|..||+.+|.+.. +|..++.|.+|++|+++||++...
T Consensus       505 ~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr~P  543 (565)
T KOG0472|consen  505 RNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFRQP  543 (565)
T ss_pred             hhcceeccCCCchhh-CChhhccccceeEEEecCCccCCC
Confidence            999999999999975 566689999999999999999843

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.86  E-value=1.6e-24  Score=180.25  Aligned_cols=236  Identities=22%  Similarity=0.271  Sum_probs=184.9

Q ss_pred             ceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEccC
Q 040206            2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLDS   79 (347)
Q Consensus         2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~~   79 (347)
                      ++.+++.++.+.+.|++++.+..++.++.++|++. .+|..+...  ..|+++++++|.+..++.  ..+..|+.++-.+
T Consensus        70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~--~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~  146 (565)
T KOG0472|consen   70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSL--ISLVKLDCSSNELKELPDSIGRLLDLEDLDATN  146 (565)
T ss_pred             eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhh--hhhhhhhccccceeecCchHHHHhhhhhhhccc
Confidence            45677788888888888888888888888888887 788888766  888888888888887776  5566778888888


Q ss_pred             CCCCccCCCCC--CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCcc
Q 040206           80 NLLQGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQT  157 (347)
Q Consensus        80 ~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  157 (347)
                      |++...+....  .++..+++.+|.++...+..+. |+.|++++...|.+...++...++.+|.-|++..|.+. .+| .
T Consensus       147 N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-e  223 (565)
T KOG0472|consen  147 NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-E  223 (565)
T ss_pred             cccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-C
Confidence            88876665553  6778888888888855444444 88899999888888877777767778888888888886 666 6


Q ss_pred             CCCCCCccEEEccCCcccCCCccc-cccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCc
Q 040206          158 NAKGCNLTSLRLSGNHLEGPLPPS-LINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLE  236 (347)
Q Consensus       158 ~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~  236 (347)
                      |..+..|.+++++.|++. ..|.. ..++.++..||+.+|.+. ..|..+.-+++|..|++++|.+++........ +|+
T Consensus       224 f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~  300 (565)
T KOG0472|consen  224 FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLK  300 (565)
T ss_pred             CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eee
Confidence            778888999999999887 44444 448889999999999998 67888888999999999999998655544443 777


Q ss_pred             EEEcccCccc
Q 040206          237 ILDMRMNKFS  246 (347)
Q Consensus       237 ~L~L~~~~~~  246 (347)
                      .|.+.+|.+.
T Consensus       301 ~L~leGNPlr  310 (565)
T KOG0472|consen  301 FLALEGNPLR  310 (565)
T ss_pred             ehhhcCCchH
Confidence            7777777653

>PLN03210 Resistant to P

Probab=99.85  E-value=5.6e-20  Score=183.22  Aligned_cols=281  Identities=20%  Similarity=0.191  Sum_probs=167.2

Q ss_pred             CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCC-cCCCCCC-CCCCCCcEEEcc
Q 040206            1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN-VLTSIDH-LPWKNLQYLTLD   78 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~-~~~~~L~~L~l~   78 (347)
                      +|+.|.+.++.++.+|..+ ...+|+.|++.++++. .++..+..  +++|+.|+++++ .+..++. ..+++|+.|+++
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~--l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~  665 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHS--LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLS  665 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-cccccccc--CCCCCEEECCCCCCcCcCCccccCCcccEEEec
Confidence            3677788888888888766 4678888888888776 55555543  378888888765 3555554 456778888888


Q ss_pred             CCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccC
Q 040206           79 SNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIP  155 (347)
Q Consensus        79 ~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  155 (347)
                      +|......+..   +++|+.|++++|..-..+|..+ ++++|+.|++++|......+..  ..+|+.|+++++.+. .+|
T Consensus       666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP  741 (1153)
T PLN03210        666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFP  741 (1153)
T ss_pred             CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-ccc
Confidence            77644333322   3677888887764333445443 5777777777777544333322  246677777776654 333


Q ss_pred             ccCCCCC-------------------------------CccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCc
Q 040206          156 QTNAKGC-------------------------------NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPE  204 (347)
Q Consensus       156 ~~~~~~~-------------------------------~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~  204 (347)
                      ..+ .++                               +|+.|++++|......|..++.+++|+.|++++|...+.+|.
T Consensus       742 ~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~  820 (1153)
T PLN03210        742 SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT  820 (1153)
T ss_pred             ccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence            322 233                               455555555544334455555555555555555533223333


Q ss_pred             cccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206          205 CLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD  284 (347)
Q Consensus       205 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~  284 (347)
                      .. .+++|+.|++++|......+..  ..+|+.|++++|.+.              .+|.++..+++|+.|++++|.--.
T Consensus       821 ~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~--------------~iP~si~~l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        821 GI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE--------------EVPWWIEKFSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             CC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc--------------cChHHHhcCCCCCEEECCCCCCcC
Confidence            33 4555555555555332222221  135556666665555              466667778888888888864433


Q ss_pred             ccchhhhhccCCCEEEcccceee
Q 040206          285 TFLYWLDVLLQLQVLILRSNRFW  307 (347)
Q Consensus       285 ~~~~~~~~l~~L~~l~L~~n~~~  307 (347)
                      ..+..+..+++|+.+++++|+-.
T Consensus       884 ~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        884 RVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             ccCcccccccCCCeeecCCCccc
Confidence            45555667788888888888633

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.85  E-value=1.2e-19  Score=180.85  Aligned_cols=294  Identities=19%  Similarity=0.245  Sum_probs=218.5

Q ss_pred             ceEEEecCCC------CC-CCChhhhcCC-CccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCC
Q 040206            2 TIKTQVKTCN------IS-EFPDILRTQH-QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKN   71 (347)
Q Consensus         2 l~~l~l~~~~------~~-~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~   71 (347)
                      |+.|.+..+.      .. .+|..+..++ +|+.|.+.++.+. .+|..+   ...+|+.|++.++.+..+..  ..+++
T Consensus       560 L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f---~~~~L~~L~L~~s~l~~L~~~~~~l~~  635 (1153)
T PLN03210        560 LLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF---RPENLVKLQMQGSKLEKLWDGVHSLTG  635 (1153)
T ss_pred             ccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC---CccCCcEEECcCccccccccccccCCC
Confidence            5667775442      22 5777777775 6999999999887 788777   34899999999999887755  57899


Q ss_pred             CcEEEccCCCCCccCCCC--CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCc
Q 040206           72 LQYLTLDSNLLQGSLPDL--PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNN  149 (347)
Q Consensus        72 L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  149 (347)
                      |+.|+++++......+..  +++|+.|++++|......|..+.++++|+.|++++|......|....+.+|+.|++++|.
T Consensus       636 Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        636 LRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence            999999987644333333  489999999998765578888999999999999998655455555577899999999987


Q ss_pred             cccccCccCCCCCCccEEEccCCcccCCCcccc------------------------------ccCCCCcEEEccCCccc
Q 040206          150 FQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL------------------------------INCVNLQFLDVGNNNLS  199 (347)
Q Consensus       150 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l------------------------------~~~~~L~~L~l~~n~~~  199 (347)
                      .....|..   ..+|++|+++++.+. .+|..+                              ..+++|+.|++++|...
T Consensus       716 ~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l  791 (1153)
T PLN03210        716 RLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL  791 (1153)
T ss_pred             Cccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence            54455543   467899999998865 333221                              11346777888877665


Q ss_pred             CCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccC
Q 040206          200 GPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGN  279 (347)
Q Consensus       200 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~  279 (347)
                      ..+|..++.+++|+.|++++|...+..+.....++|+.|++++|.....             +|..   ..+|+.|++++
T Consensus       792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~-------------~p~~---~~nL~~L~Ls~  855 (1153)
T PLN03210        792 VELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT-------------FPDI---STNISDLNLSR  855 (1153)
T ss_pred             cccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc-------------cccc---ccccCEeECCC
Confidence            5677888888889999988876444555555567888899888754432             2222   35799999999


Q ss_pred             CccCCccchhhhhccCCCEEEcccceeecccCCccccceee
Q 040206          280 NQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGH  320 (347)
Q Consensus       280 n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~~~  320 (347)
                      |.+.. .|..+..+++|+.|++++|+-...+|.....+..+
T Consensus       856 n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L  895 (1153)
T PLN03210        856 TGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL  895 (1153)
T ss_pred             CCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCC
Confidence            99975 66778899999999999988766677655544433

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=6.6e-20  Score=171.08  Aligned_cols=245  Identities=27%  Similarity=0.300  Sum_probs=193.3

Q ss_pred             CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCC
Q 040206            1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSN   80 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~   80 (347)
                      .++.|++.+|+++.+|..   .++|++|++++|+++ .+|...     ++|+.|++++|.++.++. .+.+|+.|++++|
T Consensus       223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~lp-----~sL~~L~Ls~N~L~~Lp~-lp~~L~~L~Ls~N  292 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVLP-----PGLLELSIFSNPLTHLPA-LPSGLCKLWIFGN  292 (788)
T ss_pred             CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCcc-----cccceeeccCCchhhhhh-chhhcCEEECcCC
Confidence            368899999999998863   589999999999998 566432     789999999999988776 3478999999999


Q ss_pred             CCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206           81 LLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK  160 (347)
Q Consensus        81 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  160 (347)
                      ++...+ ..+++|+.|++++|.+.. ++..   ..+|+.|++.+|.+...+ ..  ..+|+.|++++|.+. .+|..   
T Consensus       293 ~Lt~LP-~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~LP-~l--p~~Lq~LdLS~N~Ls-~LP~l---  360 (788)
T PRK15387        293 QLTSLP-VLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLP-TL--PSGLQELSVSDNQLA-SLPTL---  360 (788)
T ss_pred             cccccc-ccccccceeECCCCcccc-CCCC---cccccccccccCcccccc-cc--ccccceEecCCCccC-CCCCC---
Confidence            998654 466899999999999984 3432   246888999999887543 21  248999999999987 45543   


Q ss_pred             CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEc
Q 040206          161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDM  240 (347)
Q Consensus       161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L  240 (347)
                      ..+|+.|++++|.++ .+|..   ..+|+.|++++|.+.+ +|..   .++|+.|++++|.+++. +..  ..+|+.|++
T Consensus       361 p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssI-P~l--~~~L~~L~L  429 (788)
T PRK15387        361 PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSL-PML--PSGLLSLSV  429 (788)
T ss_pred             Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCC-Ccc--hhhhhhhhh
Confidence            357888999999988 44533   3579999999999984 4433   35799999999999853 332  257899999


Q ss_pred             ccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhh
Q 040206          241 RMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDV  292 (347)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~  292 (347)
                      ++|.++              .+|..+..+++|+.++|++|.+++..+..+..
T Consensus       430 s~NqLt--------------~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        430 YRNQLT--------------RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             ccCccc--------------ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            999998              46667888999999999999999876665543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.84  E-value=1.6e-20  Score=176.04  Aligned_cols=249  Identities=24%  Similarity=0.349  Sum_probs=137.5

Q ss_pred             ceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCCC
Q 040206            2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNL   81 (347)
Q Consensus         2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~   81 (347)
                      .+.|+++++.++.+|..+.  ++|+.|++++|+++ .+|..+.    ++|++|++++|.++.++.....+|+.|++++|.
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~  252 (754)
T PRK15370        180 KTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLTSIPATLPDTIQEMELSINR  252 (754)
T ss_pred             ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccccCChhhhccccEEECcCCc
Confidence            3456666666666665443  46777777777766 4555442    467777777777766655444567777777776


Q ss_pred             CCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCC
Q 040206           82 LQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKG  161 (347)
Q Consensus        82 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  161 (347)
                      +...+...+.+|+.|++++|.+. .+|..+.  ++|+.|++++|.+...+...  ..+|+.|++++|.+. ..|..+  .
T Consensus       253 L~~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt-~LP~~l--~  324 (754)
T PRK15370        253 ITELPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLT-ALPETL--P  324 (754)
T ss_pred             cCcCChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCccc-cCCccc--c
Confidence            66554444556677777766666 3344332  35666666666665432211  135666666666655 233322  2


Q ss_pred             CCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcc
Q 040206          162 CNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMR  241 (347)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~  241 (347)
                      ++|+.|++++|.++. +|..+  .++|+.|++++|.+. .+|..+  .++|+.|++++|.++.......  ..|+.|+++
T Consensus       325 ~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs  396 (754)
T PRK15370        325 PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQAS  396 (754)
T ss_pred             ccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhc
Confidence            456666666666552 33333  246666666666655 234333  2456666666666653322211  246666666


Q ss_pred             cCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccC
Q 040206          242 MNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID  283 (347)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~  283 (347)
                      +|.+. .+|.         .+|.....++.+..+++.+|.+.
T Consensus       397 ~N~L~-~LP~---------sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        397 RNNLV-RLPE---------SLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cCCcc-cCch---------hHHHHhhcCCCccEEEeeCCCcc
Confidence            66665 2333         12223334455666666666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.82  E-value=1.2e-21  Score=178.69  Aligned_cols=311  Identities=27%  Similarity=0.283  Sum_probs=187.4

Q ss_pred             CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEcc
Q 040206            1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLD   78 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~   78 (347)
                      ||+.|+++++.+..+|..+..+.+|+.|+++.|.+. .+|.....+  .+|+++.|.+|.+...+.  ..+++|++|+++
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~--~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNM--RNLQYLNLKNNRLQSLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhhhh--hcchhheeccchhhcCchhHHhhhcccccccc
Confidence            477889999999999988888999999999888887 777666655  889999999988877775  567888999999


Q ss_pred             CCCCCccCCCC--CC-------------------CccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCc----
Q 040206           79 SNLLQGSLPDL--PP-------------------HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ----  133 (347)
Q Consensus        79 ~~~~~~~~~~~--~~-------------------~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----  133 (347)
                      +|.+...+...  +.                   .++.+++..+.+...++..+..+..  .++++.|.+......    
T Consensus       123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~  200 (1081)
T KOG0618|consen  123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLAN  200 (1081)
T ss_pred             hhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccc
Confidence            88876433222  11                   2334444444443333333333333  355555544311000    


Q ss_pred             --------------ccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCccc
Q 040206          134 --------------CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLS  199 (347)
Q Consensus       134 --------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  199 (347)
                                    ...-++++.|+.+.|.+....+  -....++++++++.+.+. ..|.++..+.+|+.++...|.+.
T Consensus       201 l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~  277 (1081)
T KOG0618|consen  201 LEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV  277 (1081)
T ss_pred             hhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH
Confidence                          0011345555555555442111  112346777777777766 45577777777777777777664


Q ss_pred             CCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhcc-----------------------
Q 040206          200 GPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKK-----------------------  256 (347)
Q Consensus       200 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~-----------------------  256 (347)
                       ..|..+..+++|+.+.+..|.+.-..+..-....|+.|+|..|.+.. .|+.+...                       
T Consensus       278 -~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e  355 (1081)
T KOG0618|consen  278 -ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEE  355 (1081)
T ss_pred             -hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccc
Confidence             33344444444444444444444333222223444555555444442 11111000                       


Q ss_pred             --------------ccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccccceeeee
Q 040206          257 --------------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHFI  322 (347)
Q Consensus       257 --------------~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~~~~~  322 (347)
                                    .......+.+.++++|+.|+|++|++...+...+.++..|++|+||||.++. +|+..+.+..+..
T Consensus       356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~t  434 (1081)
T KOG0618|consen  356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHT  434 (1081)
T ss_pred             hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHH
Confidence                          0011233467889999999999999998888889999999999999999976 4455444444433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.82  E-value=1.9e-21  Score=177.43  Aligned_cols=212  Identities=25%  Similarity=0.269  Sum_probs=137.4

Q ss_pred             CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEcc
Q 040206           91 PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLS  170 (347)
Q Consensus        91 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  170 (347)
                      .++++++++++++. ..|+.+..+.+|+.+....|.+...+...+...+|+.+.+..|.+. ..|........|++|++.
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence            66777888887777 4557777788888888888777655555555566666666666665 556666666677777777


Q ss_pred             CCcccCCCcccc-c-------------------------cCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCcccc
Q 040206          171 GNHLEGPLPPSL-I-------------------------NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSG  224 (347)
Q Consensus       171 ~~~~~~~~~~~l-~-------------------------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~  224 (347)
                      .|.+... |..+ .                         ..+.|+.|.+.+|.+++.....+..+..|+.|++++|.+..
T Consensus       319 ~N~L~~l-p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~  397 (1081)
T KOG0618|consen  319 SNNLPSL-PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS  397 (1081)
T ss_pred             hcccccc-chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence            6665422 1111 0                         12335555556666655444556667777777777777764


Q ss_pred             CcCccccc-cCCcEEEcccCcccccCChhhhcc----------ccccCCCcCccCCCCCcEEEccCCccCCccchhhhhc
Q 040206          225 PIPECLAN-STLEILDMRMNKFSGSLPQNICKK----------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVL  293 (347)
Q Consensus       225 ~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l  293 (347)
                      .....+.. +.|+.|+|++|+++ .+|..+...          .++..+| .+.++++|+.+|++.|.++..........
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~  475 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS  475 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence            44433333 66777777777776 344444222          3333556 77889999999999999986444433444


Q ss_pred             cCCCEEEcccceee
Q 040206          294 LQLQVLILRSNRFW  307 (347)
Q Consensus       294 ~~L~~l~L~~n~~~  307 (347)
                      |.|++||++||...
T Consensus       476 p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  476 PNLKYLDLSGNTRL  489 (1081)
T ss_pred             cccceeeccCCccc
Confidence            89999999999964

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=2.1e-19  Score=168.53  Aligned_cols=248  Identities=28%  Similarity=0.378  Sum_probs=193.2

Q ss_pred             CCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCc
Q 040206           23 HQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNS  102 (347)
Q Consensus        23 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~  102 (347)
                      .+...|++++++++ .+|..+.    +.|+.|++++|.++.++...+.+|++|++++|.+...+...+++|+.|++++|.
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip----~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~  252 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP----EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINR  252 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc----cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhhccccEEECcCCc
Confidence            56789999999998 6776652    679999999999999988777899999999999997766677899999999999


Q ss_pred             ccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCcccc
Q 040206          103 LTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL  182 (347)
Q Consensus       103 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  182 (347)
                      +. .+|..+.  .+|+.|++++|.+...+.. + ..+|+.|++++|.+. .+|..+.  +.|+.|++++|.++ ..|..+
T Consensus       253 L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~-l-~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l  323 (754)
T PRK15370        253 IT-ELPERLP--SALQSLDLFHNKISCLPEN-L-PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL  323 (754)
T ss_pred             cC-cCChhHh--CCCCEEECcCCccCccccc-c-CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc
Confidence            98 4555543  5899999999998854332 2 258999999999987 4554432  47999999999987 444433


Q ss_pred             ccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCC
Q 040206          183 INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPL  262 (347)
Q Consensus       183 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l  262 (347)
                        .++|+.|++++|.+.. +|..+.  ++|+.|++++|.++. .+..+ .+.|+.|++++|.+. .+|.           
T Consensus       324 --~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l-p~~L~~LdLs~N~Lt-~LP~-----------  384 (754)
T PRK15370        324 --PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL-PPTITTLDVSRNALT-NLPE-----------  384 (754)
T ss_pred             --cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh-cCCcCEEECCCCcCC-CCCH-----------
Confidence              3689999999999884 555553  689999999999884 33332 268999999999998 3333           


Q ss_pred             CcCccCCCCCcEEEccCCccCCccchhh----hhccCCCEEEcccceeec
Q 040206          263 PPSLVNCQYLEVLDVGNNQIDDTFLYWL----DVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       263 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~l~L~~n~~~~  308 (347)
                        .+.  ..|+.|++++|.+.. .|..+    ..++.+..+++.+|++..
T Consensus       385 --~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        385 --NLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             --hHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCccH
Confidence              332  268999999999985 34333    345889999999999864

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.79  E-value=7.2e-21  Score=158.31  Aligned_cols=315  Identities=23%  Similarity=0.241  Sum_probs=194.9

Q ss_pred             ceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCC-CcCCCCCCC---CCCCCcEEE
Q 040206            2 TIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQ-NVLTSIDHL---PWKNLQYLT   76 (347)
Q Consensus         2 l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~---~~~~L~~L~   76 (347)
                      ...++|.-|.|+.+|+ +|+.+++|+.|||++|+|+..-|..|.  |++.|..|.+.+ |.|++++..   .+..|+.|.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~--GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK--GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhh--hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            3678899999999995 999999999999999999844455554  668888877777 889998874   445566667


Q ss_pred             ccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccc------------------------
Q 040206           77 LDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG------------------------  129 (347)
Q Consensus        77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------------  129 (347)
                      +.-|.+.-.....   ++++..|.+.+|.+..+-...|..+..++.+.+..|.+..                        
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            6666665433322   3667777777777764444466666666666555544110                        


Q ss_pred             --------------------------------------cCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEcc
Q 040206          130 --------------------------------------QIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLS  170 (347)
Q Consensus       130 --------------------------------------~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  170 (347)
                                                            .+...| .+++|++|++++|.++.+.+.+|.....+++|.+.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence                                                  000001 23567777777777776666677777777777777


Q ss_pred             CCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCcccc-----------------CcCcccccc
Q 040206          171 GNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSG-----------------PIPECLANS  233 (347)
Q Consensus       171 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~~~~  233 (347)
                      +|++..+....|.++..|+.|++.+|+|+...|.+|..+.+|.+|++-.|++.=                 ..+..-.+.
T Consensus       307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~  386 (498)
T KOG4237|consen  307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPG  386 (498)
T ss_pred             cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCc
Confidence            777665555566777777777777777776667777777777777776554320                 000111112


Q ss_pred             CCcEEEcccCcc---cccCChhhhcc--------------------ccccCCCcCccCCCCCcEEEccCCccCCccchhh
Q 040206          234 TLEILDMRMNKF---SGSLPQNICKK--------------------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWL  290 (347)
Q Consensus       234 ~L~~L~L~~~~~---~~~~~~~~~~~--------------------~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~  290 (347)
                      .++.+.++...+   +...|++.+-.                    ..++.+|..+  -....++++.+|.++..+.+  
T Consensus       387 ~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~~~~vp~~--  462 (498)
T KOG4237|consen  387 FVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNAITSVPDE--  462 (498)
T ss_pred             hhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccchhcccCHH--
Confidence            455555554433   22333332111                    1112222111  01245788999998864444  


Q ss_pred             hhccCCCEEEcccceeecccCCccccceeeeeeE
Q 040206          291 DVLLQLQVLILRSNRFWGPIGKLRSRWSGHFIVR  324 (347)
Q Consensus       291 ~~l~~L~~l~L~~n~~~~~~~~~~~~~~~~~~~~  324 (347)
                       .+.+| .+|+++|++..---..++....+..+.
T Consensus       463 -~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tli  494 (498)
T KOG4237|consen  463 -LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLI  494 (498)
T ss_pred             -HHhhh-hcccccCceehhhcccccchhhhheeE
Confidence             56677 899999998875555555555444433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.78  E-value=1.5e-21  Score=162.31  Aligned_cols=299  Identities=20%  Similarity=0.219  Sum_probs=212.6

Q ss_pred             EEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCC---CCCcEEEccC-C
Q 040206            5 TQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW---KNLQYLTLDS-N   80 (347)
Q Consensus         5 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~L~~L~l~~-~   80 (347)
                      ++-++-+++++|..+.  +....|.+..|+|+ .+|+..|+ .+++||.|+|+.|.|+.|.+..|   ++|..|.+.+ |
T Consensus        51 VdCr~~GL~eVP~~LP--~~tveirLdqN~I~-~iP~~aF~-~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLP--PETVEIRLDQNQIS-SIPPGAFK-TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             EEccCCCcccCcccCC--CcceEEEeccCCcc-cCChhhcc-chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            3445567778887776  67889999999999 77777776 66999999999999999998544   5555555555 8


Q ss_pred             CCCccCCCCC---CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccc-----
Q 040206           81 LLQGSLPDLP---PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQ-----  151 (347)
Q Consensus        81 ~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-----  151 (347)
                      ++.......+   ..++.|.+..|++..+....|..++++..|.+++|.+.......+ ....++.+.+..|...     
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence            8886655554   677888888899988888899999999999999998875555344 4456777766665521     


Q ss_pred             -------cccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEE---EccCCcccCC-CCccccCCCCCCeEEecCC
Q 040206          152 -------GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFL---DVGNNNLSGP-IPECLGNSTRLSFLDVGNN  220 (347)
Q Consensus       152 -------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L---~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~  220 (347)
                             ...+..+++........+...++....+..+...  ++.+   -.+.+...+. ....|..+++|+.+++++|
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN  284 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN  284 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence                   1122222332222222233333332333333221  2222   1122223322 2346889999999999999


Q ss_pred             ccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEE
Q 040206          221 SLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVL  299 (347)
Q Consensus       221 ~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l  299 (347)
                      +++.+.+.++.. .++++|.|..|++...             -...|.++..|+.|+|.+|+|+...+..|..+-+|..|
T Consensus       285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v-------------~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l  351 (498)
T KOG4237|consen  285 KITRIEDGAFEGAAELQELYLTRNKLEFV-------------SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL  351 (498)
T ss_pred             ccchhhhhhhcchhhhhhhhcCcchHHHH-------------HHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence            999887777665 8999999999988732             12358889999999999999999889999999999999


Q ss_pred             EcccceeecccC-Cccccceeeee
Q 040206          300 ILRSNRFWGPIG-KLRSRWSGHFI  322 (347)
Q Consensus       300 ~L~~n~~~~~~~-~~~~~~~~~~~  322 (347)
                      ++-.||+..+.. .|+..|+..+.
T Consensus       352 ~l~~Np~~CnC~l~wl~~Wlr~~~  375 (498)
T KOG4237|consen  352 NLLSNPFNCNCRLAWLGEWLRKKS  375 (498)
T ss_pred             ehccCcccCccchHHHHHHHhhCC
Confidence            999999987644 78888887766

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=2.8e-19  Score=155.55  Aligned_cols=271  Identities=26%  Similarity=0.277  Sum_probs=145.6

Q ss_pred             EEEecCCCCC--CCChhhhcCCCccEEeccCCcccccC----ChhhhhcCCCcccEEEcCCCcCCCCCC---------CC
Q 040206            4 KTQVKTCNIS--EFPDILRTQHQLEWLDLSKNQIRGRI----PSWMWDIGVHTLQFLILSQNVLTSIDH---------LP   68 (347)
Q Consensus         4 ~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~---------~~   68 (347)
                      +|+|.++.++  ..+..+..+++|+.|+++++.+++..    +..+.  ..+++++++++++.+...+.         ..
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~   79 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR--PQPSLKELCLSLNETGRIPRGLQSLLQGLTK   79 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh--hCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence            5778888776  55667788888999999999886432    22333  23668888888876653111         22


Q ss_pred             CCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCC---CCccEEEcccCcccccCC-----cccCC-cc
Q 040206           69 WKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNL---SSIQYLNLSNNSLSGQIP-----QCLGN-ST  139 (347)
Q Consensus        69 ~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~-----~~~~~-~~  139 (347)
                      +++|+.|++++|.+...                     .+..+..+   ++|+.|++++|.+.....     ..... ++
T Consensus        80 ~~~L~~L~l~~~~~~~~---------------------~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~  138 (319)
T cd00116          80 GCGLQELDLSDNALGPD---------------------GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA  138 (319)
T ss_pred             cCceeEEEccCCCCChh---------------------HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCC
Confidence            44666666666555421                     11112222   225555555554431100     00112 34


Q ss_pred             ccEEECCCCcccc----ccCccCCCCCCccEEEccCCcccCC----CccccccCCCCcEEEccCCcccCC----CCcccc
Q 040206          140 LETLDLGMNNFQG----SIPQTNAKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDVGNNNLSGP----IPECLG  207 (347)
Q Consensus       140 L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~----~~~~l~  207 (347)
                      |+.+++++|.+..    .....+..+++|++|++++|.++..    .+..+..+++|++|++++|.+.+.    ....+.
T Consensus       139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~  218 (319)
T cd00116         139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA  218 (319)
T ss_pred             ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc
Confidence            5555555554431    1222344445666666666665522    122334445777777777766422    223445


Q ss_pred             CCCCCCeEEecCCccccCcCcccc------ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCc
Q 040206          208 NSTRLSFLDVGNNSLSGPIPECLA------NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ  281 (347)
Q Consensus       208 ~~~~L~~L~l~~~~~~~~~~~~~~------~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~  281 (347)
                      .+++|++|++++|.+++.....+.      ...|+.|++++|.+++....         .+...+..+++|+++++++|.
T Consensus       219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~---------~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK---------DLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH---------HHHHHHhcCCCccEEECCCCC
Confidence            566777777777766542211111      14677777777776633222         122234445677777777777


Q ss_pred             cCCcc----chhhhhc-cCCCEEEccccee
Q 040206          282 IDDTF----LYWLDVL-LQLQVLILRSNRF  306 (347)
Q Consensus       282 i~~~~----~~~~~~l-~~L~~l~L~~n~~  306 (347)
                      +++..    ...+... +.|+.+++.+|++
T Consensus       290 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         290 FGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            76542    2223333 5677777776653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=2.8e-18  Score=149.29  Aligned_cols=246  Identities=27%  Similarity=0.322  Sum_probs=141.5

Q ss_pred             ceEEEecCCCCC-----CCChhhhcCCCccEEeccCCcccc------cCChhhhhcCCCcccEEEcCCCcCCCCCC---C
Q 040206            2 TIKTQVKTCNIS-----EFPDILRTQHQLEWLDLSKNQIRG------RIPSWMWDIGVHTLQFLILSQNVLTSIDH---L   67 (347)
Q Consensus         2 l~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~   67 (347)
                      ++.+++++|.++     .+++.+...+++++++++++.+.+      .++..+..  +++|+.|+++++.+.....   .
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK--GCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh--cCceeEEEccCCCCChhHHHHHH
Confidence            678999999985     467778888999999999987762      12233443  4899999999998874332   1


Q ss_pred             CC---CCCcEEEccCCCCCcc--------CCCCCCCccEEEcccCcccc----cCCccccCCCCccEEEcccCcccccCC
Q 040206           68 PW---KNLQYLTLDSNLLQGS--------LPDLPPHMVQLLISNNSLTG----EIPSSFCNLSSIQYLNLSNNSLSGQIP  132 (347)
Q Consensus        68 ~~---~~L~~L~l~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~  132 (347)
                      .+   ++|++|++++|.+...        .....++|++|++++|.++.    .....+..+..                
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~----------------  166 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD----------------  166 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC----------------
Confidence            12   4488888887776521        01111445555555554441    11122333334                


Q ss_pred             cccCCccccEEECCCCcccc----ccCccCCCCCCccEEEccCCcccCC----CccccccCCCCcEEEccCCcccCCCCc
Q 040206          133 QCLGNSTLETLDLGMNNFQG----SIPQTNAKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDVGNNNLSGPIPE  204 (347)
Q Consensus       133 ~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~  204 (347)
                             |++|++++|.+.+    ..+..+...++|++|++++|.++..    ....+..+++|++|++++|.+.+....
T Consensus       167 -------L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         167 -------LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             -------cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence                   5555555544431    1112233345666666666665422    223345567777888877776542222


Q ss_pred             ccc-----CCCCCCeEEecCCccccCcCc-----cccccCCcEEEcccCcccccCChhhhccccccCCCcCccCC-CCCc
Q 040206          205 CLG-----NSTRLSFLDVGNNSLSGPIPE-----CLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNC-QYLE  273 (347)
Q Consensus       205 ~l~-----~~~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~  273 (347)
                      .+.     ..+.|+.|++.+|.+++....     ....++|+++++++|.+.+.....+         ...+... +.|+
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~---------~~~~~~~~~~~~  310 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL---------AESLLEPGNELE  310 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH---------HHHHhhcCCchh
Confidence            221     236788888888877532211     1112578888888888886543322         2223333 4677


Q ss_pred             EEEccCCc
Q 040206          274 VLDVGNNQ  281 (347)
Q Consensus       274 ~L~L~~n~  281 (347)
                      .+++.++.
T Consensus       311 ~~~~~~~~  318 (319)
T cd00116         311 SLWVKDDS  318 (319)
T ss_pred             hcccCCCC
Confidence            77776664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=1.1e-16  Score=118.99  Aligned_cols=186  Identities=27%  Similarity=0.332  Sum_probs=144.1

Q ss_pred             ccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcE
Q 040206          111 FCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQF  190 (347)
Q Consensus       111 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  190 (347)
                      +..+..++.|.++.|.++..+|......+|+.|++++|.+. .+|..++.+++|+.++++-|++. ..|.+|+.++.|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            44567788888888988888888778888999999998887 78888888999999998888887 78888999999999


Q ss_pred             EEccCCccc-CCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCC
Q 040206          191 LDVGNNNLS-GPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNC  269 (347)
Q Consensus       191 L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  269 (347)
                      ||+++|++. ..+|..|..+..|+.|++++|.+.-..+......+|+.|.++.|.+.              .+|..++.+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll--------------~lpkeig~l  172 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL--------------SLPKEIGDL  172 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh--------------hCcHHHHHH
Confidence            999988875 36777888888888888888888755555555688888888888777              466677888


Q ss_pred             CCCcEEEccCCccCCccchhhhhcc---CCCEEEcccceeecccCCc
Q 040206          270 QYLEVLDVGNNQIDDTFLYWLDVLL---QLQVLILRSNRFWGPIGKL  313 (347)
Q Consensus       270 ~~L~~L~L~~n~i~~~~~~~~~~l~---~L~~l~L~~n~~~~~~~~~  313 (347)
                      ..|++|++.+|+++-.+|+ ++.+.   +=+...+.+||+.-.+.+.
T Consensus       173 t~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~pIaeQ  218 (264)
T KOG0617|consen  173 TRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVNPIAEQ  218 (264)
T ss_pred             HHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence            8888888888888765554 34332   2345567778877665533

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.54  E-value=8.8e-17  Score=119.44  Aligned_cols=159  Identities=29%  Similarity=0.398  Sum_probs=104.8

Q ss_pred             CcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCC
Q 040206          132 PQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTR  211 (347)
Q Consensus       132 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~  211 (347)
                      +..+.+..+..|.++.|.++ ..|..+..+.+|+.+++.+|+++ ..|..++.+++|+.|+++.|++. ..|..|++++.
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~  103 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA  103 (264)
T ss_pred             ccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence            33445556666677777766 56666666777777777777776 55666777777777777777665 56677777777


Q ss_pred             CCeEEecCCccccC--cCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchh
Q 040206          212 LSFLDVGNNSLSGP--IPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYW  289 (347)
Q Consensus       212 L~~L~l~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~  289 (347)
                      |+.|++.+|++.+.  ...++....|+-|+|+.|.+.              -+|..++++.+|+.|.+..|.+.. .|..
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe--------------~lp~dvg~lt~lqil~lrdndll~-lpke  168 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--------------ILPPDVGKLTNLQILSLRDNDLLS-LPKE  168 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc--------------cCChhhhhhcceeEEeeccCchhh-CcHH
Confidence            77777777666532  223444466677777777666              356666777777777777776653 5555


Q ss_pred             hhhccCCCEEEcccceeec
Q 040206          290 LDVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       290 ~~~l~~L~~l~L~~n~~~~  308 (347)
                      ++.+..|++|++.||+++-
T Consensus       169 ig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  169 IGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             HHHHHHHHHHhcccceeee
Confidence            6677777777777777665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.36  E-value=1.8e-14  Score=118.77  Aligned_cols=142  Identities=20%  Similarity=0.210  Sum_probs=98.9

Q ss_pred             CCCCCCccEEEccCCcccCC----CccccccCCCCcEEEccCCcccC----CCCccccCCCCCCeEEecCCccccCcCcc
Q 040206          158 NAKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDVGNNNLSG----PIPECLGNSTRLSFLDVGNNSLSGPIPEC  229 (347)
Q Consensus       158 ~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  229 (347)
                      ....++|+.+...+|++...    +...+...+.|+.+.++.|.|..    .....+..+++|+.|++++|.++......
T Consensus       153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~  232 (382)
T KOG1909|consen  153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA  232 (382)
T ss_pred             cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence            44556788888888877633    23345667888888888887752    22345678888999999888877544433


Q ss_pred             cc-----ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCc----cchhhhhccCCCEEE
Q 040206          230 LA-----NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT----FLYWLDVLLQLQVLI  300 (347)
Q Consensus       230 ~~-----~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~l~  300 (347)
                      ++     .++|+.+++++|-+...+...+.+.        .-...|+|+.+.+.+|.|+..    ....+...+.|..|+
T Consensus       233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a--------l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLn  304 (382)
T KOG1909|consen  233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDA--------LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLN  304 (382)
T ss_pred             HHHHhcccchheeecccccccccccHHHHHHH--------HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhc
Confidence            22     2678889999988887766654331        123467899999999988642    223345578899999


Q ss_pred             cccceee
Q 040206          301 LRSNRFW  307 (347)
Q Consensus       301 L~~n~~~  307 (347)
                      |++|++.
T Consensus       305 LngN~l~  311 (382)
T KOG1909|consen  305 LNGNRLG  311 (382)
T ss_pred             CCccccc
Confidence            9999983

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.33  E-value=5.8e-14  Score=115.83  Aligned_cols=163  Identities=18%  Similarity=0.274  Sum_probs=108.2

Q ss_pred             ccccEEECCCCcccc----ccCccCCCCCCccEEEccCCcccCC----CccccccCCCCcEEEccCCcccC----CCCcc
Q 040206          138 STLETLDLGMNNFQG----SIPQTNAKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDVGNNNLSG----PIPEC  205 (347)
Q Consensus       138 ~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~----~~~~~  205 (347)
                      +.|+.+...+|.+..    .....+...+.|+.+.++.|.+...    ...++..+++|+.||+.+|-++.    .+...
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            456677666666531    1223455567888888888876532    23456789999999999997752    34456


Q ss_pred             ccCCCCCCeEEecCCccccCcCcccc------ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccC
Q 040206          206 LGNSTRLSFLDVGNNSLSGPIPECLA------NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGN  279 (347)
Q Consensus       206 l~~~~~L~~L~l~~~~~~~~~~~~~~------~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~  279 (347)
                      +..+++|+.+++++|.+...+...+.      .+.|+.+.+.+|.|+......+         .......+.|+.|+|++
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l---------a~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL---------AACMAEKPDLEKLNLNG  307 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH---------HHHHhcchhhHHhcCCc
Confidence            78889999999999998876554332      2799999999999987544422         22334478899999999


Q ss_pred             CccC--Cccchhh-hhc----cCCCEEEcccceeecc
Q 040206          280 NQID--DTFLYWL-DVL----LQLQVLILRSNRFWGP  309 (347)
Q Consensus       280 n~i~--~~~~~~~-~~l----~~L~~l~L~~n~~~~~  309 (347)
                      |++.  +.....+ ..+    ..+...+.+.+.+..+
T Consensus       308 N~l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~l~~e  344 (382)
T KOG1909|consen  308 NRLGEKDEGIDEIASKFDTAHVLLEDIDDSEEELERE  344 (382)
T ss_pred             ccccccchhHHHHHHhcccccccchhhchhHHHHHhh
Confidence            9993  2222222 222    2344555555555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=8.5e-13  Score=112.08  Aligned_cols=197  Identities=22%  Similarity=0.175  Sum_probs=93.3

Q ss_pred             CceEEEecCCCCCCCC--hhhhcCCCccEEeccCCcccccCCh-hhhhcCCCcccEEEcCCCcCCCCCC----CCCCCCc
Q 040206            1 KTIKTQVKTCNISEFP--DILRTQHQLEWLDLSKNQIRGRIPS-WMWDIGVHTLQFLILSQNVLTSIDH----LPWKNLQ   73 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~L~   73 (347)
                      ||+.+.|.++.+...+  .....|++++.|+++.|-+..-.+- .+.+ -+|+|+.|+++.|.+.....    ..+++|+
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~e-qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAE-QLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHH-hcccchhcccccccccCCccccchhhhhhhh
Confidence            3555666666655444  3556666666666666655533222 1222 34666666666665544333    3445666


Q ss_pred             EEEccCCCCCc----cCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccC--CcccCCccccEEECCC
Q 040206           74 YLTLDSNLLQG----SLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQI--PQCLGNSTLETLDLGM  147 (347)
Q Consensus        74 ~L~l~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~  147 (347)
                      .|.++.|+++.    .....+|+|+.|++..|....+......-++.|+.|++++|.+....  +....++.|+.|+++.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence            66666666652    12222356666666555322122222333455666666665554322  1122334555555555


Q ss_pred             CccccccC-cc-----CCCCCCccEEEccCCcccC-CCccccccCCCCcEEEccCCcc
Q 040206          148 NNFQGSIP-QT-----NAKGCNLTSLRLSGNHLEG-PLPPSLINCVNLQFLDVGNNNL  198 (347)
Q Consensus       148 ~~~~~~~~-~~-----~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~  198 (347)
                      +.+.+... +.     ...+++|++|++..|++.+ .....+..+++|+.|.+..|.+
T Consensus       281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            55432211 11     1233455555555555421 1112233344444454444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.4e-12  Score=110.72  Aligned_cols=209  Identities=20%  Similarity=0.208  Sum_probs=146.8

Q ss_pred             CCCCChhhhcCCCccEEeccCCcccccCCh--hhhhcCCCcccEEEcCCCcCCCCCC-----CCCCCCcEEEccCCCCCc
Q 040206           12 ISEFPDILRTQHQLEWLDLSKNQIRGRIPS--WMWDIGVHTLQFLILSQNVLTSIDH-----LPWKNLQYLTLDSNLLQG   84 (347)
Q Consensus        12 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~~~~~~~   84 (347)
                      +..+.+-=.++++|+.+.+.++.+. ..+.  ...  .|++++.|+++.|-+..+..     ..+++|+.|+++.|.+..
T Consensus       110 fDki~akQsn~kkL~~IsLdn~~V~-~~~~~~~~k--~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~  186 (505)
T KOG3207|consen  110 FDKIAAKQSNLKKLREISLDNYRVE-DAGIEEYSK--ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN  186 (505)
T ss_pred             HHHHHHHhhhHHhhhheeecCcccc-ccchhhhhh--hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence            3344444457889999999999876 3332  333  45999999999998888766     678999999999998763


Q ss_pred             ----cCCCCCCCccEEEcccCcccc-cCCccccCCCCccEEEcccCc-ccccCCcccCCccccEEECCCCccccccC--c
Q 040206           85 ----SLPDLPPHMVQLLISNNSLTG-EIPSSFCNLSSIQYLNLSNNS-LSGQIPQCLGNSTLETLDLGMNNFQGSIP--Q  156 (347)
Q Consensus        85 ----~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~  156 (347)
                          .....+++++.|.++.|.++- .+......+|+|+.|++..|. +.......--.+.|+.|++++|.+. ..+  .
T Consensus       187 ~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~  265 (505)
T KOG3207|consen  187 FISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGY  265 (505)
T ss_pred             CccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccc
Confidence                233345899999999998762 222345578999999999984 3322222223457999999999876 333  4


Q ss_pred             cCCCCCCccEEEccCCcccCCCcccc------ccCCCCcEEEccCCcccCC-CCccccCCCCCCeEEecCCcccc
Q 040206          157 TNAKGCNLTSLRLSGNHLEGPLPPSL------INCVNLQFLDVGNNNLSGP-IPECLGNSTRLSFLDVGNNSLSG  224 (347)
Q Consensus       157 ~~~~~~~L~~L~l~~~~~~~~~~~~l------~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~~~~~  224 (347)
                      ....++.|..++++.+++.+..-...      ..+++|+.|++..|++.+. ....+..+++|+.|.+..|.+..
T Consensus       266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            56677889999999988875422222      4568899999999988532 11334556677777777776653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=6.4e-11  Score=106.08  Aligned_cols=194  Identities=37%  Similarity=0.434  Sum_probs=120.7

Q ss_pred             EEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCC-CCcEEEccCCCCCcc--CCCCCCCccEEEcccC
Q 040206           27 WLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWK-NLQYLTLDSNLLQGS--LPDLPPHMVQLLISNN  101 (347)
Q Consensus        27 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~-~L~~L~l~~~~~~~~--~~~~~~~L~~L~l~~~  101 (347)
                      .+....+.+.... ..+..  ++.++.+++.++.++.++.  .... +|+.|++++|++...  ....+++|+.|+++.|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~--~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLE--LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhc--ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence            4555555553222 22222  2567777777777777766  2222 677777777777765  4455677777777777


Q ss_pred             cccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccc
Q 040206          102 SLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPS  181 (347)
Q Consensus       102 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  181 (347)
                      ++. ..+...+..+.|+.|++++|.+.......-....|+++.+++|... ..+..+....++..+.+..+++. ..+..
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~  250 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPES  250 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccch
Confidence            777 3333333667777777777777744333222334777777777433 44555666667777777777665 22456


Q ss_pred             cccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCc
Q 040206          182 LINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE  228 (347)
Q Consensus       182 l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  228 (347)
                      ++.++.++.|++++|.+.....  +....+++.++++++.+....+.
T Consensus       251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             hccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            6777778888888887764332  67777788888877776654443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.14  E-value=6.2e-11  Score=106.18  Aligned_cols=197  Identities=32%  Similarity=0.355  Sum_probs=121.1

Q ss_pred             EEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCc-cccEEECCCCccccccCccCCCCCCccEEEccCCc
Q 040206           95 QLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNS-TLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNH  173 (347)
Q Consensus        95 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  173 (347)
                      .+.+..+.+. .....+..++.++.+.+.++.++...+...... +|+.++++.|.+. ..+..+..+++|+.|+++.|+
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            3455555442 122233344667777777777775555444442 6777777777765 444556667777777777777


Q ss_pred             ccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhh
Q 040206          174 LEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNI  253 (347)
Q Consensus       174 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  253 (347)
                      +. ..+...+..+.|+.|++++|.+. .+|........|.++.+.+|.+...........++..+.+.+|++..      
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~------  246 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED------  246 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee------
Confidence            76 33333336677777777777776 33444344555777777777544344444444566666667766662      


Q ss_pred             hccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206          254 CKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG  311 (347)
Q Consensus       254 ~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~  311 (347)
                              ++..++.++.++.|++++|.++....  ++.+.+++.+++++|.+....+
T Consensus       247 --------~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         247 --------LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             --------ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence                    34456667778888888887776444  6677778888888777765433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=1.8e-12  Score=113.66  Aligned_cols=169  Identities=30%  Similarity=0.375  Sum_probs=81.3

Q ss_pred             EEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcc
Q 040206           95 QLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHL  174 (347)
Q Consensus        95 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  174 (347)
                      ..+++.|.+. .+|..+..+..|+.+.++.|.+-..+........|..++++.|.+. ..|..++.+ -|+.+-+++|++
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNkl  155 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNKL  155 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCcc
Confidence            3445555544 4444444444555555555544433333333444555555555554 444444443 244444555555


Q ss_pred             cCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhh
Q 040206          175 EGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNIC  254 (347)
Q Consensus       175 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~  254 (347)
                      + ..|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++.....+ .+.-.|..||+++|++.        
T Consensus       156 ~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~E-l~~LpLi~lDfScNkis--------  224 (722)
T KOG0532|consen  156 T-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSLPLIRLDFSCNKIS--------  224 (722)
T ss_pred             c-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCCceeeeecccCcee--------
Confidence            4 44444554455555555555554 3344445555555555555554422222 22334555555555555        


Q ss_pred             ccccccCCCcCccCCCCCcEEEccCCccC
Q 040206          255 KKLCFGPLPPSLVNCQYLEVLDVGNNQID  283 (347)
Q Consensus       255 ~~~~~~~l~~~~~~~~~L~~L~L~~n~i~  283 (347)
                            .+|..|..+..|++|-|.+|.+.
T Consensus       225 ------~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  225 ------YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ------ecchhhhhhhhheeeeeccCCCC
Confidence                  24444555555555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=8.5e-11  Score=90.92  Aligned_cols=130  Identities=28%  Similarity=0.265  Sum_probs=45.8

Q ss_pred             CCccEEEccCCcccCCCccccc-cCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccc-cccCCcEEE
Q 040206          162 CNLTSLRLSGNHLEGPLPPSLI-NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL-ANSTLEILD  239 (347)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~  239 (347)
                      .++++|++.++.++..  ..++ .+.+|+.|++++|.+...  ..+..++.|++|++++|.++....... ..++|+.|+
T Consensus        19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            4567777777777633  3444 466777777777777632  356667777777777777775433222 246777777


Q ss_pred             cccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCcc---chhhhhccCCCEEEcccceeecc
Q 040206          240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTF---LYWLDVLLQLQVLILRSNRFWGP  309 (347)
Q Consensus       240 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~l~L~~n~~~~~  309 (347)
                      +++|+|.+..           .+ ..+..+++|+.|++.+|.+....   ...+..+|+|+.||-  .++++.
T Consensus        95 L~~N~I~~l~-----------~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~--~~V~~~  153 (175)
T PF14580_consen   95 LSNNKISDLN-----------EL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG--QDVTEE  153 (175)
T ss_dssp             -TTS---SCC-----------CC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT--EETTS-
T ss_pred             CcCCcCCChH-----------Hh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC--EEccHH
Confidence            7777776421           11 24567888888888888876422   234567788888774  344443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=5.2e-11  Score=92.09  Aligned_cols=135  Identities=22%  Similarity=0.269  Sum_probs=43.8

Q ss_pred             ecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCcc
Q 040206            7 VKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGS   85 (347)
Q Consensus         7 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~   85 (347)
                      +....+..+|. +.+..+++.|++.++.|+ .+. .+.. .+.+|+.|++++|.++.+.. ..++.|++|++++|.++..
T Consensus         4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~-~Ie-~L~~-~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i   79 (175)
T PF14580_consen    4 LTANMIEQIAQ-YNNPVKLRELNLRGNQIS-TIE-NLGA-TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSI   79 (175)
T ss_dssp             -----------------------------------S--T-T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-
T ss_pred             ccccccccccc-cccccccccccccccccc-ccc-chhh-hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcc
Confidence            33444445554 445567888899888887 443 3332 34788899999998888877 5678888888888888765


Q ss_pred             CC---CCCCCccEEEcccCcccccC-CccccCCCCccEEEcccCcccccCCc----ccCCccccEEEC
Q 040206           86 LP---DLPPHMVQLLISNNSLTGEI-PSSFCNLSSIQYLNLSNNSLSGQIPQ----CLGNSTLETLDL  145 (347)
Q Consensus        86 ~~---~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l  145 (347)
                      ..   ..+|+|++|++++|.+.... ...+..+++|+.|++.+|+++.....    ...+|+|+.||-
T Consensus        80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            32   23578888888888876432 24566788888888888888743211    113456666653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=4.7e-11  Score=97.14  Aligned_cols=226  Identities=22%  Similarity=0.196  Sum_probs=133.2

Q ss_pred             CCChhhhcCCCccEEeccCCc--cc------ccCChhhhhcCCCcccEEEcCCCcCCCCCCC--CCCCCcEEEccCCCCC
Q 040206           14 EFPDILRTQHQLEWLDLSKNQ--IR------GRIPSWMWDIGVHTLQFLILSQNVLTSIDHL--PWKNLQYLTLDSNLLQ   83 (347)
Q Consensus        14 ~~~~~~~~~~~L~~L~l~~~~--~~------~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~L~~L~l~~~~~~   83 (347)
                      .+...+.-+.+|+.|..++.+  +.      ..+|-.+.  .+++|+.+.++.+.-..+...  .-|.|+++.+....+.
T Consensus       173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~--~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~  250 (490)
T KOG1259|consen  173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLN--AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQ  250 (490)
T ss_pred             chHHHHHhhhheeEEEecCCCCCCccccccccccccchH--HhhhhheeeeeccchhheeceeecCchhheeeeeccccc
Confidence            344455556777777766542  11      11122222  237788888888765554441  2267888887765544


Q ss_pred             ccCCCCCCCccEEEcccC---cccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206           84 GSLPDLPPHMVQLLISNN---SLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK  160 (347)
Q Consensus        84 ~~~~~~~~~L~~L~l~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  160 (347)
                      . .+.+.|.-...+...-   ...+.....+..++.|+++++++|.|+.+....--.+.++.|+++.|.+. .. ..+..
T Consensus       251 ~-~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~  327 (490)
T KOG1259|consen  251 D-VPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TV-QNLAE  327 (490)
T ss_pred             c-cccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEecccccee-ee-hhhhh
Confidence            2 2222222222222221   11222233444567778888888877765555445567888888888775 22 23667


Q ss_pred             CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCc--CccccccCCcEE
Q 040206          161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI--PECLANSTLEIL  238 (347)
Q Consensus       161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L  238 (347)
                      +++|+.|++++|.++ ....+-..+-+.++|.+++|.+.+  ...+..+.+|..|++.+|+|....  ..+...|.|+.+
T Consensus       328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            778888888888776 333444556677788888887763  245667777888888888776422  223333777778


Q ss_pred             EcccCcccc
Q 040206          239 DMRMNKFSG  247 (347)
Q Consensus       239 ~L~~~~~~~  247 (347)
                      .|.+|.+..
T Consensus       405 ~L~~NPl~~  413 (490)
T KOG1259|consen  405 RLTGNPLAG  413 (490)
T ss_pred             hhcCCCccc
Confidence            888887763

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=2.4e-11  Score=98.75  Aligned_cols=130  Identities=26%  Similarity=0.288  Sum_probs=98.8

Q ss_pred             CCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcc
Q 040206          162 CNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMR  241 (347)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~  241 (347)
                      ..|+++++++|.++ .+.....-.|.++.|+++.|++...  ..++.+++|..|++++|.++...-.....-+++.|.|+
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            46888889988887 4456677778899999999988733  34788889999999998887544444444688889999


Q ss_pred             cCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCcc-chhhhhccCCCEEEcccceeecc
Q 040206          242 MNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTF-LYWLDVLLQLQVLILRSNRFWGP  309 (347)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~l~L~~n~~~~~  309 (347)
                      .|.+.+.               +.+.++-+|..||+++|+|...- ...++++|-|+.+.|.+||+.+.
T Consensus       361 ~N~iE~L---------------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  361 QNKIETL---------------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhHhhh---------------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            9888731               24567778999999999886422 24578889999999999998763

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.99  E-value=2e-11  Score=107.19  Aligned_cols=167  Identities=26%  Similarity=0.349  Sum_probs=94.1

Q ss_pred             EEEccCCCCCccCCCC--CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccc
Q 040206           74 YLTLDSNLLQGSLPDL--PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQ  151 (347)
Q Consensus        74 ~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  151 (347)
                      ..+++.|++...+...  +..|+.+.+..|.+. .++..++++..|+.++++.|++...+.. ....-|+.+.+++|++.
T Consensus        79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lpLkvli~sNNkl~  156 (722)
T KOG0532|consen   79 FADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLPLKVLIVSNNKLT  156 (722)
T ss_pred             hhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChh-hhcCcceeEEEecCccc
Confidence            4455555555433332  355666666666665 5555666666666666666666533322 23334666666666665


Q ss_pred             cccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc
Q 040206          152 GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA  231 (347)
Q Consensus       152 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  231 (347)
                       ..|..+...++|..++.+.|.+. ..|..++.+.+|+.|.+..|.+. .+|..+..+ .|..|+++.|++......+-.
T Consensus       157 -~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~iPv~fr~  232 (722)
T KOG0532|consen  157 -SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISYLPVDFRK  232 (722)
T ss_pred             -cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceeecchhhhh
Confidence             55555555566666666666665 34445566666666666666655 334444433 356666666666644434444


Q ss_pred             ccCCcEEEcccCccc
Q 040206          232 NSTLEILDMRMNKFS  246 (347)
Q Consensus       232 ~~~L~~L~L~~~~~~  246 (347)
                      ..+|++|-|.+|.+.
T Consensus       233 m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  233 MRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhheeeeeccCCCC
Confidence            466666666666666

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.95  E-value=5.4e-10  Score=107.48  Aligned_cols=77  Identities=25%  Similarity=0.316  Sum_probs=39.4

Q ss_pred             eEEEecCCC--CCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEc
Q 040206            3 IKTQVKTCN--ISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTL   77 (347)
Q Consensus         3 ~~l~l~~~~--~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l   77 (347)
                      +.|-+.++.  +..++. +|..+|.|+.||+++|.-.+.+|..+.++  -+||.|+++++.+..+|.  .+++.|.+|++
T Consensus       548 ~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L--i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl  625 (889)
T KOG4658|consen  548 RTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL--VHLRYLDLSDTGISHLPSGLGNLKKLIYLNL  625 (889)
T ss_pred             ceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh--hhhhcccccCCCccccchHHHHHHhhheecc
Confidence            344444443  333332 35555666666665553333555555544  555555555555555544  44555555555


Q ss_pred             cCCC
Q 040206           78 DSNL   81 (347)
Q Consensus        78 ~~~~   81 (347)
                      ..+.
T Consensus       626 ~~~~  629 (889)
T KOG4658|consen  626 EVTG  629 (889)
T ss_pred             cccc
Confidence            5444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=1.9e-09  Score=68.63  Aligned_cols=60  Identities=33%  Similarity=0.413  Sum_probs=52.3

Q ss_pred             cCCcEEEcccCcccccCChhhhccccccCCC-cCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEccccee
Q 040206          233 STLEILDMRMNKFSGSLPQNICKKLCFGPLP-PSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF  306 (347)
Q Consensus       233 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~  306 (347)
                      ++|++|++++|.+..              +| .+|.++++|++|++++|.+....+..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~--------------i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE--------------IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESE--------------ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCc--------------cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            478899999998884              33 4688999999999999999988888999999999999999975

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=6.3e-11  Score=96.23  Aligned_cols=168  Identities=18%  Similarity=0.136  Sum_probs=107.2

Q ss_pred             CceEEEecCCCCC--CCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCC-cCCCCCC----CCCCCCc
Q 040206            1 KTIKTQVKTCNIS--EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN-VLTSIDH----LPWKNLQ   73 (347)
Q Consensus         1 ~l~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~----~~~~~L~   73 (347)
                      +++++||+...++  .+...+..|.+|+.|++.++.+.+.+...+++.  .+|+.++++.+ .++....    ..+..|+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN--~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN--SNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc--ccceeeccccccccchhHHHHHHHhhhhHh
Confidence            3678899988888  666788899999999999999998888888876  89999999986 4554443    5678888


Q ss_pred             EEEccCCCCCcc-----CCCCCCCccEEEcccCccc--c-cCCccccCCCCccEEEcccCcccc--cCCcccCCccccEE
Q 040206           74 YLTLDSNLLQGS-----LPDLPPHMVQLLISNNSLT--G-EIPSSFCNLSSIQYLNLSNNSLSG--QIPQCLGNSTLETL  143 (347)
Q Consensus        74 ~L~l~~~~~~~~-----~~~~~~~L~~L~l~~~~~~--~-~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L  143 (347)
                      .|++++|.....     +....++|+.|+++|+.-.  . .+..-...+++|.+||++++....  ....++.++.|++|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            899988887643     2233477788888776321  1 111123356777777777664321  11222344556666


Q ss_pred             ECCCCccccccCc---cCCCCCCccEEEccCC
Q 040206          144 DLGMNNFQGSIPQ---TNAKGCNLTSLRLSGN  172 (347)
Q Consensus       144 ~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~  172 (347)
                      .++.|-.  ..|.   .+...|.|.+|++.++
T Consensus       344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            6665532  1221   2333455555555444

>PLN03150 hypothetical protein; Provisional

Probab=98.77  E-value=2.1e-08  Score=94.44  Aligned_cols=109  Identities=28%  Similarity=0.400  Sum_probs=72.6

Q ss_pred             CcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCc
Q 040206          188 LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSL  266 (347)
Q Consensus       188 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~  266 (347)
                      ++.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+. .++|+.|+|++|.+.+.             +|..+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-------------iP~~l  486 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-------------IPESL  486 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-------------CchHH
Confidence            56677777777767777777777777777777777665554333 36777777777777764             33345


Q ss_pred             cCCCCCcEEEccCCccCCccchhhhhc-cCCCEEEcccceeecc
Q 040206          267 VNCQYLEVLDVGNNQIDDTFLYWLDVL-LQLQVLILRSNRFWGP  309 (347)
Q Consensus       267 ~~~~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~l~L~~n~~~~~  309 (347)
                      +.+++|+.|+|++|.+.+..|..+... ..+..+++.+|+..+.
T Consensus       487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence            667777777777777776666655542 3556677777765543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.71  E-value=1.3e-08  Score=64.74  Aligned_cols=59  Identities=44%  Similarity=0.602  Sum_probs=34.0

Q ss_pred             CccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCc
Q 040206          163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNS  221 (347)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  221 (347)
                      +|++|++++|+++...+..|..+++|++|++++|.+....+.+|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555565555554444555556666666666666555555555666666666665554

...

>PLN03150 hypothetical protein; Provisional

Probab=98.68  E-value=6.2e-08  Score=91.27  Aligned_cols=89  Identities=35%  Similarity=0.621  Sum_probs=57.9

Q ss_pred             ccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccc-cCCcEEEccc
Q 040206          164 LTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRM  242 (347)
Q Consensus       164 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~  242 (347)
                      ++.|+++++.+....|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..+..+.. ++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            566666666666666666666677777777777666666666666777777777777666555544333 6677777777


Q ss_pred             CcccccCChh
Q 040206          243 NKFSGSLPQN  252 (347)
Q Consensus       243 ~~~~~~~~~~  252 (347)
                      |.+.+.+|..
T Consensus       500 N~l~g~iP~~  509 (623)
T PLN03150        500 NSLSGRVPAA  509 (623)
T ss_pred             CcccccCChH
Confidence            7766655553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.67  E-value=5.8e-09  Score=93.78  Aligned_cols=235  Identities=27%  Similarity=0.239  Sum_probs=143.7

Q ss_pred             EEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCC
Q 040206            4 KTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLL   82 (347)
Q Consensus         4 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~   82 (347)
                      .+++..+.+..+...+..+++|+.+++.+|++. .+...+.  .+++|++|++++|.|+.+.. ..+..|+.|++++|.+
T Consensus        76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~--~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i  152 (414)
T KOG0531|consen   76 ELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLLS--SLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLI  152 (414)
T ss_pred             hhccchhhhhhhhcccccccceeeeeccccchh-hcccchh--hhhcchheeccccccccccchhhccchhhheeccCcc
Confidence            344555555555555777888888888888887 3333232  34888888888888888777 5667788888888888


Q ss_pred             CccCCCC-CCCccEEEcccCcccccCC-ccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206           83 QGSLPDL-PPHMVQLLISNNSLTGEIP-SSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK  160 (347)
Q Consensus        83 ~~~~~~~-~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  160 (347)
                      .....-. ++.|+.+++++|.+..+.. . ...+.+++.+.+.+|.+... ...-....+..+.+..|.+....+  +..
T Consensus       153 ~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~--l~~  228 (414)
T KOG0531|consen  153 SDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEG--LNE  228 (414)
T ss_pred             hhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccC--ccc
Confidence            7543322 6788888888888875544 2 46677888888888877632 222222333344666666542221  222


Q ss_pred             CC--CccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccC---cCc--ccccc
Q 040206          161 GC--NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP---IPE--CLANS  233 (347)
Q Consensus       161 ~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~--~~~~~  233 (347)
                      +.  .|+.+++.++++. ..+..+..+..+..+++.++.+...  ..+...+.+..+....+.+...   ...  ....+
T Consensus       229 ~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (414)
T KOG0531|consen  229 LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAP  305 (414)
T ss_pred             chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccc
Confidence            22  3778888888776 3324566677788888887776521  2333444444555555544311   111  22235


Q ss_pred             CCcEEEcccCccccc
Q 040206          234 TLEILDMRMNKFSGS  248 (347)
Q Consensus       234 ~L~~L~L~~~~~~~~  248 (347)
                      .++...+..+.+...
T Consensus       306 ~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  306 TLVTLTLELNPIRKI  320 (414)
T ss_pred             cccccccccCccccc
Confidence            667777777766543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=3.3e-09  Score=95.37  Aligned_cols=245  Identities=25%  Similarity=0.198  Sum_probs=165.1

Q ss_pred             hcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEccCCCCCccCC-CCCCCccEE
Q 040206           20 RTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLDSNLLQGSLP-DLPPHMVQL   96 (347)
Q Consensus        20 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L   96 (347)
                      ..+..++.+++..+.+.. +...+.  .+.+|+.+++.+|.+..+..  ..+++|++|++++|.++.... ..++.|+.|
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~~l~--~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L  145 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILNHLS--KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKEL  145 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhcccc--cccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhh
Confidence            356677777788877763 333333  34899999999999998887  668999999999999986433 334679999


Q ss_pred             EcccCcccccCCccccCCCCccEEEcccCcccccCCc-ccCCccccEEECCCCccccccCccCCCCCCccEEEccCCccc
Q 040206           97 LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE  175 (347)
Q Consensus        97 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  175 (347)
                      ++.+|.+..+  ..+..+..|+.+++.+|.+...... .-...+++.+.+.+|.+.  ....+..+..+..+.+..+.++
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh--cccchHHHHHHHHhhcccccce
Confidence            9999999744  3455688999999999988855442 245668888889998764  2233344445555577777776


Q ss_pred             CCCccccccCCC--CcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhh
Q 040206          176 GPLPPSLINCVN--LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNI  253 (347)
Q Consensus       176 ~~~~~~l~~~~~--L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  253 (347)
                      ..  ..+.....  |+.+++++|++. ..+..+..+..+..+++..+.+.... ..-..+.+..+....+.+...-..  
T Consensus       222 ~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--  295 (414)
T KOG0531|consen  222 KL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLALSEAI--  295 (414)
T ss_pred             ec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc-cccccchHHHhccCcchhcchhhh--
Confidence            33  22333343  889999999887 33356777888888998888776322 222234556666666665522000  


Q ss_pred             hccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206          254 CKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD  284 (347)
Q Consensus       254 ~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~  284 (347)
                             .-.......+.+..+.+.++.+..
T Consensus       296 -------~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  296 -------SQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             -------hccccccccccccccccccCcccc
Confidence                   011124566778888888887654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.59  E-value=8.7e-08  Score=92.56  Aligned_cols=79  Identities=30%  Similarity=0.317  Sum_probs=33.1

Q ss_pred             CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEc
Q 040206           91 PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRL  169 (347)
Q Consensus        91 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  169 (347)
                      |.|+.||+++|.--...|..++.+-+|++|+++++.+...+...-.+..|.+|++..+......+.....+++|+++.+
T Consensus       571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l  649 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL  649 (889)
T ss_pred             cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence            4444444444332224444444444444444444444433333333334444444443322223333333444444444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=5.3e-09  Score=85.24  Aligned_cols=148  Identities=18%  Similarity=0.124  Sum_probs=110.6

Q ss_pred             CceEEEecCCCCC-CCChhhhcCCCccEEeccCC-cccccCChhhhhcCCCcccEEEcCCCcCCCCCC-----CCCCCCc
Q 040206            1 KTIKTQVKTCNIS-EFPDILRTQHQLEWLDLSKN-QIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-----LPWKNLQ   73 (347)
Q Consensus         1 ~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~L~   73 (347)
                      ||+.|.+.|..+. .+...+++..+|+.++++.| +++......++. .|+.|..|++++|.+.....     .--++|+
T Consensus       211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~-scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~  289 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS-SCSRLDELNLSWCFLFTEKVTVAVAHISETLT  289 (419)
T ss_pred             hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH-hhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence            5788999999998 77788999999999999988 677555556666 78999999999997655433     1226799


Q ss_pred             EEEccCCCCC------ccCCCCCCCccEEEcccC-cccccCCccccCCCCccEEEcccCccc--ccCCcccCCccccEEE
Q 040206           74 YLTLDSNLLQ------GSLPDLPPHMVQLLISNN-SLTGEIPSSFCNLSSIQYLNLSNNSLS--GQIPQCLGNSTLETLD  144 (347)
Q Consensus        74 ~L~l~~~~~~------~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~  144 (347)
                      .|+++++.-.      .....-+|+|.+||++++ .++......|.+++.|++|.++.|...  +..-.+-..++|.+|+
T Consensus       290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLd  369 (419)
T KOG2120|consen  290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLD  369 (419)
T ss_pred             hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEE
Confidence            9999988643      122333599999999988 455555567888999999999998542  1112222567999999


Q ss_pred             CCCCc
Q 040206          145 LGMNN  149 (347)
Q Consensus       145 l~~~~  149 (347)
                      +-++-
T Consensus       370 v~g~v  374 (419)
T KOG2120|consen  370 VFGCV  374 (419)
T ss_pred             ecccc
Confidence            88864

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.49  E-value=2.3e-09  Score=97.17  Aligned_cols=128  Identities=25%  Similarity=0.254  Sum_probs=72.9

Q ss_pred             CccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEccc
Q 040206          163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRM  242 (347)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~  242 (347)
                      +|...+.+.|.+. .+...+.-++.++.|+++.|.+...  ..+..++.|++|++++|.++-+........+|..|.+++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence            4555555555554 4444555566666666666666532  355666666666666666653322222224566777777


Q ss_pred             CcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCcc-chhhhhccCCCEEEcccceeec
Q 040206          243 NKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTF-LYWLDVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~l~L~~n~~~~  308 (347)
                      |.++..               ..+.++.+|..||+++|-+.+.. ...+..+..|+.|+|.|||+-.
T Consensus       242 N~l~tL---------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  242 NALTTL---------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             cHHHhh---------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            766521               12455666777777777665422 1234456677777777777653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.48  E-value=1.1e-09  Score=99.14  Aligned_cols=194  Identities=26%  Similarity=0.287  Sum_probs=124.1

Q ss_pred             CCccEEeccCCcccccC-ChhhhhcCCCcccEEEcCCCcCCCCCC-CCC-CCCcEEEccCCC---------CCccCCCCC
Q 040206           23 HQLEWLDLSKNQIRGRI-PSWMWDIGVHTLQFLILSQNVLTSIDH-LPW-KNLQYLTLDSNL---------LQGSLPDLP   90 (347)
Q Consensus        23 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~-~~L~~L~l~~~~---------~~~~~~~~~   90 (347)
                      ++++.+.+-...-.+.. |-.++..  ..|+.|.++++++..... ..+ .+|++|...+.-         ..+.+...+
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF--~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~  161 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPF--RSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP  161 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccc--cceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch
Confidence            34444444333322222 4455544  788888888887766433 111 345555433210         012223333


Q ss_pred             --CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEE
Q 040206           91 --PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLR  168 (347)
Q Consensus        91 --~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  168 (347)
                        ..|...++++|.+. .+...+.-++.++.|+++.|.++... ....++.|++|++++|.+. .+|..-..-++|+.|.
T Consensus       162 ~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~  238 (1096)
T KOG1859|consen  162 VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN  238 (1096)
T ss_pred             hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccccchhhhhheeee
Confidence              45667777888877 55567777888999999999888443 5557788999999999887 5554444445689999


Q ss_pred             ccCCcccCCCccccccCCCCcEEEccCCcccCC-CCccccCCCCCCeEEecCCccc
Q 040206          169 LSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGP-IPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       169 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                      +.+|.+++.  .++.++.+|+.||+++|-+.+. -...+..+..|+.|.+.+|++.
T Consensus       239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            999888744  5678888899999999876531 1223455667888888888764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.40  E-value=5.1e-09  Score=89.04  Aligned_cols=138  Identities=22%  Similarity=0.149  Sum_probs=75.6

Q ss_pred             CCCccEEEccCCcc-cCCCcccc-ccCCCCcEEEccCCcc-cCCCCccc-cCCCCCCeEEecCCccccCc---Ccccccc
Q 040206          161 GCNLTSLRLSGNHL-EGPLPPSL-INCVNLQFLDVGNNNL-SGPIPECL-GNSTRLSFLDVGNNSLSGPI---PECLANS  233 (347)
Q Consensus       161 ~~~L~~L~l~~~~~-~~~~~~~l-~~~~~L~~L~l~~n~~-~~~~~~~l-~~~~~L~~L~l~~~~~~~~~---~~~~~~~  233 (347)
                      +.+|+.+..+++.- ++.....+ .++++|+.+-+.+|.. .+.-...+ ..++.|+.+++.++......   ......+
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            34566666666532 21111122 3456777777777642 21111122 24667777777766533222   1122236


Q ss_pred             CCcEEEcccC-cccccCChhhhccccccCCCcCccCCCCCcEEEccCCcc-CCccchhhhhccCCCEEEcccceee
Q 040206          234 TLEILDMRMN-KFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI-DDTFLYWLDVLLQLQVLILRSNRFW  307 (347)
Q Consensus       234 ~L~~L~L~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~l~L~~n~~~  307 (347)
                      .|+.+.+++| .+++++..         .+...-.+...|+.+.++++.. ++...+.+..+++|+.+++.++.-.
T Consensus       373 ~lr~lslshce~itD~gi~---------~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIR---------HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV  439 (483)
T ss_pred             hhccCChhhhhhhhhhhhh---------hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence            7777777777 34433111         1122233456788888888865 3455566777888888888888743

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=1.2e-07  Score=77.55  Aligned_cols=190  Identities=21%  Similarity=0.147  Sum_probs=94.4

Q ss_pred             CCCccEEEcccCcccc--cCCccccCCCCccEEEcccCcccccCCcc-cCCccccEEECCCCcccc-ccCccCCCCCCcc
Q 040206           90 PPHMVQLLISNNSLTG--EIPSSFCNLSSIQYLNLSNNSLSGQIPQC-LGNSTLETLDLGMNNFQG-SIPQTNAKGCNLT  165 (347)
Q Consensus        90 ~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~  165 (347)
                      ..+++++++.+|.+++  .+...+.++|.|+.|+++.|.+...+... ....+|+.|.+.+..+.. .....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            3667777777776652  22334556777777777777766444333 233466666666654431 1223444555566


Q ss_pred             EEEccCCcccCC--Cccccc-cCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEccc
Q 040206          166 SLRLSGNHLEGP--LPPSLI-NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRM  242 (347)
Q Consensus       166 ~L~l~~~~~~~~--~~~~l~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~  242 (347)
                      +++++.|.+...  ...... .-+.++++....|...               +...-|++.      -.++++..+-+..
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~---------------~w~~~~~l~------r~Fpnv~sv~v~e  208 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ---------------LWLNKNKLS------RIFPNVNSVFVCE  208 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHH---------------HHHHHHhHH------hhcccchheeeec
Confidence            665555532211  000011 1123333333333221               000001111      0113444444554


Q ss_pred             CcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC-ccchhhhhccCCCEEEcccceeecccCC
Q 040206          243 NKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD-TFLYWLDVLLQLQVLILRSNRFWGPIGK  312 (347)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~l~L~~n~~~~~~~~  312 (347)
                      |.+...-.            ...+..++.+.-|+|+.+.|.+ ...+.+..++.|.-|.++++|+.+.+..
T Consensus       209 ~PlK~~s~------------ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  209 GPLKTESS------------EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             Ccccchhh------------cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence            54443211            1233445556677777777765 2235577788888888888887776554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=8.3e-08  Score=78.42  Aligned_cols=200  Identities=23%  Similarity=0.223  Sum_probs=127.3

Q ss_pred             ccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-----CCCCCCcEEEccCCCCCccCCCCC---CCccEE
Q 040206           25 LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-----LPWKNLQYLTLDSNLLQGSLPDLP---PHMVQL   96 (347)
Q Consensus        25 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L   96 (347)
                      ++.+.+.++.|.+......+...+..++.+++.+|.++++..     .++|.|++|+++.|++...+...+   .+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            335556666665444333332256889999999999888776     678999999999999886655553   788999


Q ss_pred             EcccCccc-ccCCccccCCCCccEEEcccCcccc--cCCccc--CCccccEEECCCCcccccc--CccCCCCCCccEEEc
Q 040206           97 LISNNSLT-GEIPSSFCNLSSIQYLNLSNNSLSG--QIPQCL--GNSTLETLDLGMNNFQGSI--PQTNAKGCNLTSLRL  169 (347)
Q Consensus        97 ~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~--~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l  169 (347)
                      .+.+..+. ......+..+|.++.|.++.|..-.  ......  ..+.++++....|......  ...-..+|++..+.+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v  206 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV  206 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence            99888765 2334456678888888888884321  111111  1235666666666543211  112223467777777


Q ss_pred             cCCcccCC-CccccccCCCCcEEEccCCcccCC-CCccccCCCCCCeEEecCCcccc
Q 040206          170 SGNHLEGP-LPPSLINCVNLQFLDVGNNNLSGP-IPECLGNSTRLSFLDVGNNSLSG  224 (347)
Q Consensus       170 ~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~~~~~  224 (347)
                      ..|.+.+. ..+....++.+-.|+++.+++.+. ..+.+..+++|+.|.+.++++.+
T Consensus       207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            77765422 223445566677788888877632 22456778888888888887653

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.21  E-value=1.6e-05  Score=69.65  Aligned_cols=137  Identities=18%  Similarity=0.181  Sum_probs=68.4

Q ss_pred             hhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCC-cCCCCCCCCCCCCcEEEccCCCCCccCCCCCCCccEEE
Q 040206           19 LRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN-VLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLL   97 (347)
Q Consensus        19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~   97 (347)
                      +..+++++.|++++|.+. .+|. +  .  .+|++|.++++ .++.++..-.++|+.|.+++|...   ..++++|+.|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P--~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L---~sLP~sLe~L~  118 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--P--NELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEI---SGLPESVRSLE  118 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--C--CCCcEEEccCCCCcccCCchhhhhhhheEccCcccc---cccccccceEE
Confidence            344677777777777666 5552 1  1  35777777764 444444333356777777766311   23445666666


Q ss_pred             cccCcccccCCccccCC-CCccEEEcccCcccccCC-cccCCccccEEECCCCccccccCccCCCCCCccEEEccCC
Q 040206           98 ISNNSLTGEIPSSFCNL-SSIQYLNLSNNSLSGQIP-QCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGN  172 (347)
Q Consensus        98 l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  172 (347)
                      +.++....     +..+ ++|+.|.+.++....... ...-.++|+.|.+++|... ..|..+.  ..|+.|.++.+
T Consensus       119 L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        119 IKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             eCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            65544331     2222 245555554322110000 0011236677777666543 2333222  46666666544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.20  E-value=8.2e-08  Score=77.46  Aligned_cols=220  Identities=20%  Similarity=0.188  Sum_probs=101.0

Q ss_pred             hhcCCCccEEeccCCcccccCChhhhhc--CCCcccEEEcCCCcCCCCC-------------CCCCCCCcEEEccCCCCC
Q 040206           19 LRTQHQLEWLDLSKNQIRGRIPSWMWDI--GVHTLQFLILSQNVLTSID-------------HLPWKNLQYLTLDSNLLQ   83 (347)
Q Consensus        19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~-------------~~~~~~L~~L~l~~~~~~   83 (347)
                      +.-+..++.+++++|.|.+.-..++.+.  .-.+|+..++++--.....             ..+|++|+..++++|.++
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            3446777777888777765554444331  1145666665543111110             034566666666666655


Q ss_pred             ccCCCCC-------CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccc---
Q 040206           84 GSLPDLP-------PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGS---  153 (347)
Q Consensus        84 ~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---  153 (347)
                      ...+..+       ..|++|.+++|.+-.+-...++.  .|++|-        ........+.|+.+....|++..-   
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la--------~nKKaa~kp~Le~vicgrNRlengs~~  175 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLA--------YNKKAADKPKLEVVICGRNRLENGSKE  175 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHH--------HHhhhccCCCceEEEeccchhccCcHH
Confidence            3332221       34444444444433111111110  000000        000111223455555555544210   


Q ss_pred             -cCccCCCCCCccEEEccCCcccCCCc-----cccccCCCCcEEEccCCcccC----CCCccccCCCCCCeEEecCCccc
Q 040206          154 -IPQTNAKGCNLTSLRLSGNHLEGPLP-----PSLINCVNLQFLDVGNNNLSG----PIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       154 -~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                       ....+..-..|+.+.+..|.+.....     ..+..+.+|+.||+.+|.++.    .+..++..++.|+.|.+..|-++
T Consensus       176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence             00112222356666666665542211     122345677777777776542    22334556666777777777665


Q ss_pred             cCcCcccc-------ccCCcEEEcccCccccc
Q 040206          224 GPIPECLA-------NSTLEILDMRMNKFSGS  248 (347)
Q Consensus       224 ~~~~~~~~-------~~~L~~L~L~~~~~~~~  248 (347)
                      ..+....-       .++|..|...||.+.+.
T Consensus       256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             cccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            44332211       15666666666655543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.16  E-value=3.9e-06  Score=64.98  Aligned_cols=100  Identities=24%  Similarity=0.326  Sum_probs=51.8

Q ss_pred             CcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCCCC---CCCccEEEcccCccccc-CCccccCCCCccEEEcc
Q 040206           49 HTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGE-IPSSFCNLSSIQYLNLS  123 (347)
Q Consensus        49 ~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~  123 (347)
                      .+...++|++|.+...+. ..++.|..|.+..|.++.+-+.+   .++|..|.+.+|+++.. .-.-+..++.|++|.+-
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            345555555555544443 34455556666655555433322   35566666666655521 11234556666777666


Q ss_pred             cCcccccCCc----ccCCccccEEECCCC
Q 040206          124 NNSLSGQIPQ----CLGNSTLETLDLGMN  148 (347)
Q Consensus       124 ~~~~~~~~~~----~~~~~~L~~L~l~~~  148 (347)
                      +|+++.....    ....++|+.|+++.-
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhhh
Confidence            6666533221    113356677766654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.14  E-value=1.4e-07  Score=68.25  Aligned_cols=105  Identities=19%  Similarity=0.244  Sum_probs=59.2

Q ss_pred             EEecCCCCCCCChhh---hcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEccC
Q 040206            5 TQVKTCNISEFPDIL---RTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLDS   79 (347)
Q Consensus         5 l~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~~   79 (347)
                      ++|+.|.+-.+++++   .+..+|+.+++++|.+. .+|+.+.. .++.++++++.+|.+.+++.  ..++.|+.|+++.
T Consensus        32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~-kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~  109 (177)
T KOG4579|consen   32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTI-KFPTATTLNLANNEISDVPEELAAMPALRSLNLRF  109 (177)
T ss_pred             cccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhh-ccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence            455566555454433   34455555666666665 55555554 33456666666666655555  3445555555555


Q ss_pred             CCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCc
Q 040206           80 NLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ  133 (347)
Q Consensus        80 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  133 (347)
                      |++.                      ..|..+..+.++-.|+..++.+.+++..
T Consensus       110 N~l~----------------------~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  110 NPLN----------------------AEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             Cccc----------------------cchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            5544                      4455555566666677776666655544

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.11  E-value=4.3e-05  Score=66.97  Aligned_cols=135  Identities=16%  Similarity=0.237  Sum_probs=90.1

Q ss_pred             CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCC-cCCCCCCCCCCCCcEEEccC
Q 040206            1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN-VLTSIDHLPWKNLQYLTLDS   79 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~L~~L~l~~   79 (347)
                      ++++|++++|.++.+|. +.  .+|+.|.+++|.--..+|..+.    ++|+.|.+++| .+..++    .+|+.|++..
T Consensus        53 ~l~~L~Is~c~L~sLP~-LP--~sLtsL~Lsnc~nLtsLP~~LP----~nLe~L~Ls~Cs~L~sLP----~sLe~L~L~~  121 (426)
T PRK15386         53 ASGRLYIKDCDIESLPV-LP--NELTEITIENCNNLTTLPGSIP----EGLEKLTVCHCPEISGLP----ESVRSLEIKG  121 (426)
T ss_pred             CCCEEEeCCCCCcccCC-CC--CCCcEEEccCCCCcccCCchhh----hhhhheEccCcccccccc----cccceEEeCC
Confidence            36789999999998883 22  4699999998754446675542    68999999998 565443    4688898876


Q ss_pred             CCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCc
Q 040206           80 NLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNN  149 (347)
Q Consensus        80 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  149 (347)
                      +... .+..++++|+.|.+.++.-.......-.-.++|++|.+.+|.....+.. + ..+|+.|+++.+.
T Consensus       122 n~~~-~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~-L-P~SLk~L~ls~n~  188 (426)
T PRK15386        122 SATD-SIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEK-L-PESLQSITLHIEQ  188 (426)
T ss_pred             CCCc-ccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccc-c-cccCcEEEecccc
Confidence            6554 3556778899999865331101100001125899999998876532221 1 2489999987753

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.11  E-value=3.5e-06  Score=49.06  Aligned_cols=36  Identities=28%  Similarity=0.375  Sum_probs=22.8

Q ss_pred             CceEEEecCCCCCCCChhhhcCCCccEEeccCCccc
Q 040206            1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIR   36 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   36 (347)
                      +|++|++++|+++.+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            356666666666666666666666666666666665

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.01  E-value=1.4e-06  Score=70.48  Aligned_cols=233  Identities=18%  Similarity=0.121  Sum_probs=133.2

Q ss_pred             CCCCcEEEccCCCCCccCCCCC-------CCccEEEcccCccc---c-------cCCccccCCCCccEEEcccCcccccC
Q 040206           69 WKNLQYLTLDSNLLQGSLPDLP-------PHMVQLLISNNSLT---G-------EIPSSFCNLSSIQYLNLSNNSLSGQI  131 (347)
Q Consensus        69 ~~~L~~L~l~~~~~~~~~~~~~-------~~L~~L~l~~~~~~---~-------~~~~~~~~l~~L~~L~l~~~~~~~~~  131 (347)
                      +..+..+++++|.+++..+..+       .+|+..+++.-...   +       ....++-+|+.|+..++++|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            4678889999998875433221       56666666654321   1       22234556788888888888776444


Q ss_pred             Cccc-----CCccccEEECCCCccccccCcc-------------CCCCCCccEEEccCCcccCCCc----cccccCCCCc
Q 040206          132 PQCL-----GNSTLETLDLGMNNFQGSIPQT-------------NAKGCNLTSLRLSGNHLEGPLP----PSLINCVNLQ  189 (347)
Q Consensus       132 ~~~~-----~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~  189 (347)
                      +...     ....|.+|.+++|.+.......             ...-|.|+.+....|++.....    ..+.....|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            4322     2347888888888664221111             2233677777777777652211    1223335677


Q ss_pred             EEEccCCcccCCC-----CccccCCCCCCeEEecCCccccCcCccccc-----cCCcEEEcccCcccccCChhhhccccc
Q 040206          190 FLDVGNNNLSGPI-----PECLGNSTRLSFLDVGNNSLSGPIPECLAN-----STLEILDMRMNKFSGSLPQNICKKLCF  259 (347)
Q Consensus       190 ~L~l~~n~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~~~~~~~~~~~  259 (347)
                      .+.+..|.|....     -..+..+.+|+.|+++.|.++-....+++.     +.|+.|.+..|-++..+...+.+...-
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            7777777775221     112346677888888887776444333222     456777777777776655543221100


Q ss_pred             cCCCcCccCCCCCcEEEccCCccCCcc------chh-hhhccCCCEEEcccceeec
Q 040206          260 GPLPPSLVNCQYLEVLDVGNNQIDDTF------LYW-LDVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       260 ~~l~~~~~~~~~L~~L~L~~n~i~~~~------~~~-~~~l~~L~~l~L~~n~~~~  308 (347)
                             ...|+|..|.+.+|.+....      +.. -..+|-|..+.+.||++..
T Consensus       269 -------~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         269 -------KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             -------hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence                   12456677777777553211      111 1246677777777777754

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.01  E-value=7.8e-06  Score=63.34  Aligned_cols=121  Identities=21%  Similarity=0.269  Sum_probs=85.3

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccC
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDS   79 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~   79 (347)
                      ++++|++..+..+...=....+...+++++|.+. .++..-   +++.|.+|.+.+|.|+.+.+   ..+++|+.|.+.+
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~-~l~~lp---~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR-KLDNLP---HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchh-hcccCC---CccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            4566666666655442234467778889888876 332222   45889999999999998887   4568899999999


Q ss_pred             CCCCcc----CCCCCCCccEEEcccCccccc---CCccccCCCCccEEEcccCcc
Q 040206           80 NLLQGS----LPDLPPHMVQLLISNNSLTGE---IPSSFCNLSSIQYLNLSNNSL  127 (347)
Q Consensus        80 ~~~~~~----~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~  127 (347)
                      |.+...    ....+|+|++|.+-+|.+...   -...+..+++|+.||+.+..-
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            887642    223358999999999987732   234577899999999877543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=5.5e-06  Score=48.24  Aligned_cols=36  Identities=42%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             CCcEEEccCCccCCccchhhhhccCCCEEEcccceee
Q 040206          271 YLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFW  307 (347)
Q Consensus       271 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~  307 (347)
                      +|++|++++|+|++..+ .++.+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence            45666666666664332 3556666666666666655

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.96  E-value=2.1e-07  Score=79.53  Aligned_cols=287  Identities=18%  Similarity=0.160  Sum_probs=175.6

Q ss_pred             ceEEEecCCCCC---CCChhhhcCCCccEEeccCC-cccccCChhhhhcCCCcccEEEcCCC-cCCCCCC----CCCCCC
Q 040206            2 TIKTQVKTCNIS---EFPDILRTQHQLEWLDLSKN-QIRGRIPSWMWDIGVHTLQFLILSQN-VLTSIDH----LPWKNL   72 (347)
Q Consensus         2 l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~----~~~~~L   72 (347)
                      ++.|.++||.-.   .+-.+-.++|+++.|.+.+| ++++..-..+.+ .|++|++|++..| .+++...    ..+++|
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~-~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLAR-YCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHH-hcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            678888888544   33346678999999999999 566555556666 7899999999885 4555443    567899


Q ss_pred             cEEEccCCCCC-c----cCCCCCCCccEEEcccCcccc--cCCccccCCCCccEEEcccCc-ccccC--CcccCCccccE
Q 040206           73 QYLTLDSNLLQ-G----SLPDLPPHMVQLLISNNSLTG--EIPSSFCNLSSIQYLNLSNNS-LSGQI--PQCLGNSTLET  142 (347)
Q Consensus        73 ~~L~l~~~~~~-~----~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~-~~~~~--~~~~~~~~L~~  142 (347)
                      +++++++|..- +    ........++.+...+|.=..  .+...-+.+..+.++++..|. ++...  ....++..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            99999998743 2    222333556666666553110  001111233445555554542 22111  11124557888


Q ss_pred             EECCCCcccc--ccCccCCCCCCccEEEccCCc-ccCCCcccc-ccCCCCcEEEccCCccc--CCCCccccCCCCCCeEE
Q 040206          143 LDLGMNNFQG--SIPQTNAKGCNLTSLRLSGNH-LEGPLPPSL-INCVNLQFLDVGNNNLS--GPIPECLGNSTRLSFLD  216 (347)
Q Consensus       143 L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~  216 (347)
                      +..+++....  .....-.+.++|+.+.+.+|+ +++.....+ ++++.|+.+++.++...  +.+...-.+++.|+.+.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            8888875321  112233455789999999986 333322233 35788999999887653  22333345788999999


Q ss_pred             ecCCcc-ccCcCcc-----ccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCcc-CCccc-h
Q 040206          217 VGNNSL-SGPIPEC-----LANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI-DDTFL-Y  288 (347)
Q Consensus       217 l~~~~~-~~~~~~~-----~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i-~~~~~-~  288 (347)
                      ++.|.. ++.+...     -....++.+.|++++..-+            ..-..+..|++|+.+++-++.- +.... .
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d------------~~Le~l~~c~~Leri~l~~~q~vtk~~i~~  446 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD------------ATLEHLSICRNLERIELIDCQDVTKEAISR  446 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH------------HHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence            998753 3331111     1226888999999865532            1223577899999999999853 33333 3


Q ss_pred             hhhhccCCCEEEc
Q 040206          289 WLDVLLQLQVLIL  301 (347)
Q Consensus       289 ~~~~l~~L~~l~L  301 (347)
                      ...++|+++...+
T Consensus       447 ~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  447 FATHLPNIKVHAY  459 (483)
T ss_pred             HHhhCccceehhh
Confidence            3456787766544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.90  E-value=7.9e-06  Score=77.28  Aligned_cols=59  Identities=22%  Similarity=0.156  Sum_probs=25.6

Q ss_pred             cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCC
Q 040206           21 TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSN   80 (347)
Q Consensus        21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~   80 (347)
                      -+|.|++|.+++-.+..+--..+.. .+|+|+.||+++++++++.. ..+++|+.|.+.+-
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~-sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnL  205 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCA-SFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNL  205 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhh-ccCccceeecCCCCccCcHHHhccccHHHHhccCC
Confidence            3455555555544433221111222 33555555555555554433 44445554444433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.83  E-value=4.1e-07  Score=65.80  Aligned_cols=117  Identities=16%  Similarity=0.129  Sum_probs=49.2

Q ss_pred             CCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCc
Q 040206          187 NLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSL  266 (347)
Q Consensus       187 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~  266 (347)
                      .|+..++++|.+....+......+.++.+++.+|.+.+...+.-..+.|+.++++.|.+.              ..|..+
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~--------------~~p~vi  119 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN--------------AEPRVI  119 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc--------------cchHHH
Confidence            344444444444422222222333444444444444433333222244444444444444              223233


Q ss_pred             cCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccccce
Q 040206          267 VNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWS  318 (347)
Q Consensus       267 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~  318 (347)
                      ..+.++-.|+..+|.+..+..+.+.. ...-.+++.++++.+..+..+..|.
T Consensus       120 ~~L~~l~~Lds~~na~~eid~dl~~s-~~~al~~lgnepl~~~~~~klqa~k  170 (177)
T KOG4579|consen  120 APLIKLDMLDSPENARAEIDVDLFYS-SLPALIKLGNEPLGDETKKKLQALK  170 (177)
T ss_pred             HHHHhHHHhcCCCCccccCcHHHhcc-ccHHHHHhcCCcccccCcccccccC
Confidence            33445555565555554333332111 1112234456666666665555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.73  E-value=9.9e-06  Score=76.64  Aligned_cols=159  Identities=19%  Similarity=0.210  Sum_probs=99.6

Q ss_pred             ccccEEECCCCccccccC--ccCCCCCCccEEEccCCcccC-CCccccccCCCCcEEEccCCcccCCCCccccCCCCCCe
Q 040206          138 STLETLDLGMNNFQGSIP--QTNAKGCNLTSLRLSGNHLEG-PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSF  214 (347)
Q Consensus       138 ~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  214 (347)
                      .+|++|++++...-...+  ..-.-+|.|++|.+.+-.+.. .......++++|..||+|++++...  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            367777777754321111  122345788888887765532 2233445778899999999888743  67788888888


Q ss_pred             EEecCCcccc--CcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccch-hhh
Q 040206          215 LDVGNNSLSG--PIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLY-WLD  291 (347)
Q Consensus       215 L~l~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~-~~~  291 (347)
                      |.+.+-.+..  .....+...+|+.||+|.......- ..+.++..+      -..+|.|+.||.+++.+++...+ .+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec------~~~LpeLrfLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLEC------GMVLPELRFLDCSGTDINEEILEELLN  272 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHHHHh------cccCccccEEecCCcchhHHHHHHHHH
Confidence            8888766653  3335566688899998877555321 222221111      12367899999999988764443 345


Q ss_pred             hccCCCEEEcccce
Q 040206          292 VLLQLQVLILRSNR  305 (347)
Q Consensus       292 ~l~~L~~l~L~~n~  305 (347)
                      ..|+|+.+-+-++.
T Consensus       273 sH~~L~~i~~~~~~  286 (699)
T KOG3665|consen  273 SHPNLQQIAALDCL  286 (699)
T ss_pred             hCccHhhhhhhhhh
Confidence            56777777655433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.18  E-value=0.0001  Score=59.62  Aligned_cols=109  Identities=20%  Similarity=0.142  Sum_probs=57.3

Q ss_pred             CChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-----CCCCCCcEEEccCCCCCcc----
Q 040206           15 FPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-----LPWKNLQYLTLDSNLLQGS----   85 (347)
Q Consensus        15 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~~~~~~~~----   85 (347)
                      +.........|+.+++.++.++ .+... .  .+++|++|.++.|.+.....     ..+++|+++++++|++...    
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~~~~-P--~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TLTNF-P--KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhcccee-ecccC-C--CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc
Confidence            3333444555566666555554 22111 1  23667777777763322211     3447777777777766521    


Q ss_pred             CCCCCCCccEEEcccCcccccC---CccccCCCCccEEEcccCcc
Q 040206           86 LPDLPPHMVQLLISNNSLTGEI---PSSFCNLSSIQYLNLSNNSL  127 (347)
Q Consensus        86 ~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~  127 (347)
                      +...+.+|..|++.+|..+...   -..|.-+++|.+|+-....-
T Consensus       111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence            1111356677777777655321   12345577888887655443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.11  E-value=0.0026  Score=47.03  Aligned_cols=86  Identities=22%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             cCCccccCCCCccEEEcccCcccccCCcccCC-ccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCcccccc
Q 040206          106 EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLIN  184 (347)
Q Consensus       106 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  184 (347)
                      +....|.++.+|+.+.+.++ +.......+.. .+++.+.+.. .+.......+..+++++.+.+..+ +.......+..
T Consensus        26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~  102 (129)
T PF13306_consen   26 IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN  102 (129)
T ss_dssp             E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred             eChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcC
Confidence            33444555555555555443 33333333322 2455555543 222233334444555555555432 22222233444


Q ss_pred             CCCCcEEEccC
Q 040206          185 CVNLQFLDVGN  195 (347)
Q Consensus       185 ~~~L~~L~l~~  195 (347)
                      + +++.+.+..
T Consensus       103 ~-~l~~i~~~~  112 (129)
T PF13306_consen  103 C-NLKEINIPS  112 (129)
T ss_dssp             --T--EEE-TT
T ss_pred             C-CceEEEECC
Confidence            3 555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.00  E-value=0.0034  Score=46.38  Aligned_cols=59  Identities=19%  Similarity=0.244  Sum_probs=21.0

Q ss_pred             CCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEec
Q 040206          158 NAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVG  218 (347)
Q Consensus       158 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  218 (347)
                      |..+.+|+.+.+.. .+.......|..+++++.+.+..+ +......++..+++++.+.+.
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            33344455544442 222233334444545555555443 332333344444455555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.94  E-value=0.00058  Score=55.41  Aligned_cols=103  Identities=23%  Similarity=0.238  Sum_probs=57.1

Q ss_pred             CCCCcEEEccCCcccCCCCccccCCCCCCeEEecCC--ccccCcCc-cccccCCcEEEcccCcccccCChhhhccccccC
Q 040206          185 CVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNN--SLSGPIPE-CLANSTLEILDMRMNKFSGSLPQNICKKLCFGP  261 (347)
Q Consensus       185 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~  261 (347)
                      +..|+.+++.+..++.  ...+..+++|+.|.++.|  .+...... ....++|+++.+++|++..  +.         .
T Consensus        42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--ls---------t  108 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LS---------T  108 (260)
T ss_pred             ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cc---------c
Confidence            3455556665555542  134556777888888877  33322221 1222778888888887763  11         1


Q ss_pred             CCcCccCCCCCcEEEccCCccCC---ccchhhhhccCCCEEEc
Q 040206          262 LPPSLVNCQYLEVLDVGNNQIDD---TFLYWLDVLLQLQVLIL  301 (347)
Q Consensus       262 l~~~~~~~~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~l~L  301 (347)
                      ++ .+..+++|..|++.+|..+.   .-...|.-+++|+.+|-
T Consensus       109 l~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  109 LR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cc-hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            11 23456667777777776543   22234555666666553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=6.9e-05  Score=61.17  Aligned_cols=76  Identities=28%  Similarity=0.316  Sum_probs=52.0

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC----CCCCCCcEEEcc
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH----LPWKNLQYLTLD   78 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~L~~L~l~   78 (347)
                      +.|++=||.+..+. .+.+|+.|+.|.|+=|+|+ .+.+.-   .|.+|++|+|+.|.|.++..    .++++|+.|.|.
T Consensus        22 kKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIs-sL~pl~---rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   22 KKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKIS-SLAPLQ---RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             hhhcccCCCccHHH-HHHhcccceeEEeeccccc-cchhHH---HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            45666677776554 3667888888888877777 333222   56778888888887777665    566777777777


Q ss_pred             CCCCC
Q 040206           79 SNLLQ   83 (347)
Q Consensus        79 ~~~~~   83 (347)
                      .|+..
T Consensus        97 ENPCc  101 (388)
T KOG2123|consen   97 ENPCC  101 (388)
T ss_pred             cCCcc
Confidence            77654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=6.6e-05  Score=61.31  Aligned_cols=86  Identities=29%  Similarity=0.373  Sum_probs=56.3

Q ss_pred             CCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccc-hh
Q 040206          211 RLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL-YW  289 (347)
Q Consensus       211 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~-~~  289 (347)
                      +.+.|+..+|.+. ++.-....+.|+.|.|+-|+|+.              + ..+..|.+|++|+|..|.|.+.-. ..
T Consensus        20 ~vkKLNcwg~~L~-DIsic~kMp~lEVLsLSvNkIss--------------L-~pl~rCtrLkElYLRkN~I~sldEL~Y   83 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DISICEKMPLLEVLSLSVNKISS--------------L-APLQRCTRLKELYLRKNCIESLDELEY   83 (388)
T ss_pred             HhhhhcccCCCcc-HHHHHHhcccceeEEeecccccc--------------c-hhHHHHHHHHHHHHHhcccccHHHHHH
Confidence            4455566666554 22222333566777777777663              1 236678888888888888875332 45


Q ss_pred             hhhccCCCEEEcccceeecccCC
Q 040206          290 LDVLLQLQVLILRSNRFWGPIGK  312 (347)
Q Consensus       290 ~~~l~~L~~l~L~~n~~~~~~~~  312 (347)
                      +.++|+|+.|.|..||-.+..+.
T Consensus        84 LknlpsLr~LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENPCCGEAGQ  106 (388)
T ss_pred             HhcCchhhhHhhccCCcccccch
Confidence            67888888888888888776553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.37  E-value=0.00025  Score=65.41  Aligned_cols=233  Identities=23%  Similarity=0.155  Sum_probs=123.0

Q ss_pred             hhcCCCccEEeccCC-cccccCChhhhhcCCCcccEEEcCCC--cCCCCC------CCCCCCCcEEEccCCC-CCcc---
Q 040206           19 LRTQHQLEWLDLSKN-QIRGRIPSWMWDIGVHTLQFLILSQN--VLTSID------HLPWKNLQYLTLDSNL-LQGS---   85 (347)
Q Consensus        19 ~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~--~l~~~~------~~~~~~L~~L~l~~~~-~~~~---   85 (347)
                      ...++.|+.+.+..+ .++...-..+.. .++.|+.|+++++  .....+      ...+.+|+.++++.+. ++..   
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALAL-KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHh-hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            345788888888888 444222122222 5688999998873  111111      1445788888888887 4432   


Q ss_pred             -CCCCCCCccEEEcccCc-cccc-CCccccCCCCccEEEcccCccccc---CCcccCCccccEEECCCCccccccCccCC
Q 040206           86 -LPDLPPHMVQLLISNNS-LTGE-IPSSFCNLSSIQYLNLSNNSLSGQ---IPQCLGNSTLETLDLGMNNFQGSIPQTNA  159 (347)
Q Consensus        86 -~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  159 (347)
                       ....+++|+.|.+.++. +++. +......++.|++|+++.+.....   ......+++++.+.+....          
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------  332 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------  332 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------
Confidence             22335788998877776 4432 223344678899999987755310   0011123344443332221          


Q ss_pred             CCCCccEEEccCCccc---CCCccccccCCCCcEEEccCCcccCCC-CccccCCCCCCeEEecCCccccCcCccccccCC
Q 040206          160 KGCNLTSLRLSGNHLE---GPLPPSLINCVNLQFLDVGNNNLSGPI-PECLGNSTRLSFLDVGNNSLSGPIPECLANSTL  235 (347)
Q Consensus       160 ~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  235 (347)
                      .++.++.+.+.++...   .........+++++.+.+..+...... ...+..++.|. ..+..+..        ...++
T Consensus       333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~~--------~~~~l  403 (482)
T KOG1947|consen  333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRLC--------RSDSL  403 (482)
T ss_pred             CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHhc--------cCCcc
Confidence            1344555555443321   122334567788888888877643222 23344555552 22111100        01126


Q ss_pred             cEEEcccCcccccCChhhhccccccCCCcCccC-CCCCcEEEccCCccC
Q 040206          236 EILDMRMNKFSGSLPQNICKKLCFGPLPPSLVN-CQYLEVLDVGNNQID  283 (347)
Q Consensus       236 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~n~i~  283 (347)
                      +.|+++.+.....-           .+. .... +..++.+++.++...
T Consensus       404 ~~L~l~~~~~~t~~-----------~l~-~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  404 RVLNLSDCRLVTDK-----------GLR-CLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             ceEecccCcccccc-----------chH-HHhhhhhccccCCccCcccc
Confidence            77888777543210           010 1111 667788888887654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.79  E-value=0.0028  Score=30.59  Aligned_cols=18  Identities=56%  Similarity=0.807  Sum_probs=10.4

Q ss_pred             CccEEeccCCcccccCChh
Q 040206           24 QLEWLDLSKNQIRGRIPSW   42 (347)
Q Consensus        24 ~L~~L~l~~~~~~~~~~~~   42 (347)
                      +|++|++++|.++ .+|+.
T Consensus         1 ~L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             TESEEEETSSEES-EEGTT
T ss_pred             CccEEECCCCcCE-eCChh
Confidence            3566666666665 55544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.32  E-value=0.0098  Score=28.64  Aligned_cols=17  Identities=29%  Similarity=0.245  Sum_probs=8.6

Q ss_pred             CCEEEcccceeecccCCc
Q 040206          296 LQVLILRSNRFWGPIGKL  313 (347)
Q Consensus       296 L~~l~L~~n~~~~~~~~~  313 (347)
                      |++||+++|.++ .+|..
T Consensus         2 L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             ESEEEETSSEES-EEGTT
T ss_pred             ccEEECCCCcCE-eCChh
Confidence            455555555555 34443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.03  E-value=4.9e-05  Score=68.91  Aligned_cols=188  Identities=25%  Similarity=0.288  Sum_probs=87.9

Q ss_pred             ccEEEcccCccccc----CCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCC-CCccEE
Q 040206           93 MVQLLISNNSLTGE----IPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKG-CNLTSL  167 (347)
Q Consensus        93 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L  167 (347)
                      +..+.+.+|.+...    +...+...+.|+.|++++|.+........                   -..+... +.+++|
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l-------------------~~~l~~~~~~l~~L  149 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLL-------------------CEGLRLPQCLLQTL  149 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHH-------------------HhhcccchHHHHHH
Confidence            56666666666532    22334455666666666666552111100                   0011111 233334


Q ss_pred             EccCCcccCC----CccccccCCCCcEEEccCCcccC----CCCccc----cCCCCCCeEEecCCccccCcCccccc---
Q 040206          168 RLSGNHLEGP----LPPSLINCVNLQFLDVGNNNLSG----PIPECL----GNSTRLSFLDVGNNSLSGPIPECLAN---  232 (347)
Q Consensus       168 ~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~----~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~~~---  232 (347)
                      .+..|.++..    ....+.....++.++++.|.+..    ..+.++    ....++++|.+.+|.++.........   
T Consensus       150 ~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~  229 (478)
T KOG4308|consen  150 ELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA  229 (478)
T ss_pred             HhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh
Confidence            4444444322    22233334555555555554421    111222    23556666666666655332221111   


Q ss_pred             --cC-CcEEEcccCcccccCChhhhccccccCCCcCccCC-CCCcEEEccCCccCCccc----hhhhhccCCCEEEcccc
Q 040206          233 --ST-LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNC-QYLEVLDVGNNQIDDTFL----YWLDVLLQLQVLILRSN  304 (347)
Q Consensus       233 --~~-L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~l~L~~n  304 (347)
                        +. +..+++.+|.+.+.+...         +...+..+ +.++++++..|.|++...    ..+..++.++.+.++.|
T Consensus       230 ~~~~~~~el~l~~n~l~d~g~~~---------L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n  300 (478)
T KOG4308|consen  230 SGESLLRELDLASNKLGDVGVEK---------LLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN  300 (478)
T ss_pred             ccchhhHHHHHHhcCcchHHHHH---------HHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence              22 455666666666543332         22233333 456667777776654332    23344566667777766


Q ss_pred             eeec
Q 040206          305 RFWG  308 (347)
Q Consensus       305 ~~~~  308 (347)
                      ++..
T Consensus       301 ~l~~  304 (478)
T KOG4308|consen  301 PLTD  304 (478)
T ss_pred             cccc
Confidence            6654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.35  E-value=0.0067  Score=55.92  Aligned_cols=17  Identities=24%  Similarity=0.302  Sum_probs=8.3

Q ss_pred             ccCCCCCcEEEccCCcc
Q 040206          266 LVNCQYLEVLDVGNNQI  282 (347)
Q Consensus       266 ~~~~~~L~~L~L~~n~i  282 (347)
                      ...|+.|++|++++|..
T Consensus       291 ~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  291 AERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHhcCcccEEeeecCcc
Confidence            33455555555555543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.02  E-value=9.2e-05  Score=67.16  Aligned_cols=192  Identities=24%  Similarity=0.193  Sum_probs=96.3

Q ss_pred             ccEEeccCCcccccCChhhhhc--CCCcccEEEcCCCcCCCCCCC----CC----CCCcEEEccCCCCCccCCCCCCCcc
Q 040206           25 LEWLDLSKNQIRGRIPSWMWDI--GVHTLQFLILSQNVLTSIDHL----PW----KNLQYLTLDSNLLQGSLPDLPPHMV   94 (347)
Q Consensus        25 L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~----~~----~~L~~L~l~~~~~~~~~~~~~~~L~   94 (347)
                      +..+.+.+|.+.+.....+...  ..++|..|++++|.+.+.+..    .+    ..+++|.+..|.++.....      
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~------  162 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA------  162 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH------
Confidence            7778888888876554444331  346777788887777643331    11    2234444444443321111      


Q ss_pred             EEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcc
Q 040206           95 QLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHL  174 (347)
Q Consensus        95 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  174 (347)
                                 .....+.....++.++++.|.+.......               +....+..+....+++++.+.+|.+
T Consensus       163 -----------~l~~~L~~~~~l~~l~l~~n~l~~~g~~~---------------l~~~l~~~~~~~~~le~L~L~~~~~  216 (478)
T KOG4308|consen  163 -----------PLAAVLEKNEHLTELDLSLNGLIELGLLV---------------LSQALESAASPLSSLETLKLSRCGV  216 (478)
T ss_pred             -----------HHHHHHhcccchhHHHHHhcccchhhhHH---------------HhhhhhhhhcccccHHHHhhhhcCc
Confidence                       12233334455666666655543100000               0001111233445666667766665


Q ss_pred             cCCC----ccccccCCC-CcEEEccCCcccCC----CCccccCC-CCCCeEEecCCccccCcCccccc-----cCCcEEE
Q 040206          175 EGPL----PPSLINCVN-LQFLDVGNNNLSGP----IPECLGNS-TRLSFLDVGNNSLSGPIPECLAN-----STLEILD  239 (347)
Q Consensus       175 ~~~~----~~~l~~~~~-L~~L~l~~n~~~~~----~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~  239 (347)
                      +...    ...+...+. +..+++..|.+.+.    ....+..+ ..+++++++.|.+++........     +.++.+.
T Consensus       217 t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~  296 (478)
T KOG4308|consen  217 TSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELS  296 (478)
T ss_pred             ChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhh
Confidence            5221    122334444 56677877776533    12233344 56677777777776544433222     4667777


Q ss_pred             cccCccccc
Q 040206          240 MRMNKFSGS  248 (347)
Q Consensus       240 L~~~~~~~~  248 (347)
                      +.+|.+.+.
T Consensus       297 l~~n~l~~~  305 (478)
T KOG4308|consen  297 LSNNPLTDY  305 (478)
T ss_pred             cccCccccH
Confidence            777766653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.57  E-value=0.051  Score=24.20  Aligned_cols=13  Identities=46%  Similarity=0.647  Sum_probs=4.9

Q ss_pred             CccEEeccCCccc
Q 040206           24 QLEWLDLSKNQIR   36 (347)
Q Consensus        24 ~L~~L~l~~~~~~   36 (347)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4455555555443

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.31  E-value=0.031  Score=27.45  Aligned_cols=22  Identities=45%  Similarity=0.427  Sum_probs=13.5

Q ss_pred             CCCccEEeccCCcccccCChhh
Q 040206           22 QHQLEWLDLSKNQIRGRIPSWM   43 (347)
Q Consensus        22 ~~~L~~L~l~~~~~~~~~~~~~   43 (347)
                      +++|++|++++|++++..+..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            4678888888888876555444

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.07  E-value=0.036  Score=27.25  Aligned_cols=15  Identities=60%  Similarity=0.798  Sum_probs=6.5

Q ss_pred             CCCcEEEccCCccCC
Q 040206          270 QYLEVLDVGNNQIDD  284 (347)
Q Consensus       270 ~~L~~L~L~~n~i~~  284 (347)
                      ++|++|+|++|.|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555544

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.85  E-value=0.014  Score=45.74  Aligned_cols=38  Identities=29%  Similarity=0.225  Sum_probs=22.4

Q ss_pred             CCCCcEEEccCC-ccCCccchhhhhccCCCEEEccccee
Q 040206          269 CQYLEVLDVGNN-QIDDTFLYWLDVLLQLQVLILRSNRF  306 (347)
Q Consensus       269 ~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~l~L~~n~~  306 (347)
                      .++|+.|++++| +|++.....+..+++|+.|.+.+=+.
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence            455666666666 45555555566666666666654443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.63  E-value=0.018  Score=45.19  Aligned_cols=81  Identities=17%  Similarity=0.055  Sum_probs=42.2

Q ss_pred             cccEEECCCCccccccCccCCCCCCccEEEccCCccc-CCCccccc-cCCCCcEEEccCC-cccCCCCccccCCCCCCeE
Q 040206          139 TLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE-GPLPPSLI-NCVNLQFLDVGNN-NLSGPIPECLGNSTRLSFL  215 (347)
Q Consensus       139 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~-~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L  215 (347)
                      .++.++.+++.+....-+.+..++.++.+.+..|.-- +.....++ ..++|+.|++++| +|++.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            3555666666555444455555666666666665421 11111111 2356666666666 4444444455566666666


Q ss_pred             EecC
Q 040206          216 DVGN  219 (347)
Q Consensus       216 ~l~~  219 (347)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.42  E-value=0.19  Score=25.11  Aligned_cols=21  Identities=29%  Similarity=0.207  Sum_probs=12.8

Q ss_pred             CCCcEEEccCCccCCccchhh
Q 040206          270 QYLEVLDVGNNQIDDTFLYWL  290 (347)
Q Consensus       270 ~~L~~L~L~~n~i~~~~~~~~  290 (347)
                      ++|++|+|++|.+...+...|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456777777777765544443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.42  E-value=0.19  Score=25.11  Aligned_cols=21  Identities=29%  Similarity=0.207  Sum_probs=12.8

Q ss_pred             CCCcEEEccCCccCCccchhh
Q 040206          270 QYLEVLDVGNNQIDDTFLYWL  290 (347)
Q Consensus       270 ~~L~~L~L~~n~i~~~~~~~~  290 (347)
                      ++|++|+|++|.+...+...|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456777777777765544443

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=88.63  E-value=1.4  Score=39.61  Aligned_cols=114  Identities=21%  Similarity=0.102  Sum_probs=62.0

Q ss_pred             CCcEEEccCCcccCCCCc--cccCCCCCCeEEecCCccccC-cCcccc---------ccCCcEEEcccCcccccCChhhh
Q 040206          187 NLQFLDVGNNNLSGPIPE--CLGNSTRLSFLDVGNNSLSGP-IPECLA---------NSTLEILDMRMNKFSGSLPQNIC  254 (347)
Q Consensus       187 ~L~~L~l~~n~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~-~~~~~~---------~~~L~~L~L~~~~~~~~~~~~~~  254 (347)
                      .++.+.+..|+..+....  .+..-++.+.+.+.......+ ......         ..-+..+.++.+........   
T Consensus       355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s---  431 (553)
T KOG4242|consen  355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLES---  431 (553)
T ss_pred             eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHH---
Confidence            478888888877654332  334455677777654332110 000000         02455666666665532211   


Q ss_pred             ccccccCCCcCccCCCCCcEEEccCCccCCcc----chhhhhccCCCEEEcccceeeccc
Q 040206          255 KKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTF----LYWLDVLLQLQVLILRSNRFWGPI  310 (347)
Q Consensus       255 ~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~l~L~~n~~~~~~  310 (347)
                             .......-+.+.++++++|...+..    ++....-.+++.+..+.|......
T Consensus       432 -------~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~g  484 (553)
T KOG4242|consen  432 -------AINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPG  484 (553)
T ss_pred             -------HHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccc
Confidence                   1123445567888999998776522    333444456777777777766543

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=82.61  E-value=0.93  Score=23.14  Aligned_cols=17  Identities=35%  Similarity=0.446  Sum_probs=10.1

Q ss_pred             CCCcEEEccCCccCCcc
Q 040206          270 QYLEVLDVGNNQIDDTF  286 (347)
Q Consensus       270 ~~L~~L~L~~n~i~~~~  286 (347)
                      ++|++|+|++|.+.+..
T Consensus         2 ~~L~~LdL~~N~i~~~G   18 (28)
T smart00368        2 PSLRELDLSNNKLGDEG   18 (28)
T ss_pred             CccCEEECCCCCCCHHH
Confidence            34666666666665433

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=80.75  E-value=1.1  Score=41.05  Aligned_cols=62  Identities=27%  Similarity=0.156  Sum_probs=30.0

Q ss_pred             cCCCccEEeccCCcccccC-ChhhhhcCCCcccEEEcCCC--cCCCCC---CCCCCCCcEEEccCCCCC
Q 040206           21 TQHQLEWLDLSKNQIRGRI-PSWMWDIGVHTLQFLILSQN--VLTSID---HLPWKNLQYLTLDSNLLQ   83 (347)
Q Consensus        21 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~--~l~~~~---~~~~~~L~~L~l~~~~~~   83 (347)
                      +.+.+..+++++|++-..- ...+.. ..|+|.+|+|++|  .+....   ..+...|++|.+.+|++.
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq-~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc  283 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQ-IAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC  283 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHH-hcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence            4555666666666554111 111222 3366666666666  222211   133345666666666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	347
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-23
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-05
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-23
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		7e-10
1g9u_A	454	Crystal Structure Of Yopm-leucine Rich Effector Pro		6e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 141/284 (49%), Gaps = 22/284 (7%)
Query: 23  HQLEWLDLSKNQIRGR-IPSWMWDIGVHTLQFLILSQNVLTS-IDHLPWKNLQYLTLDSN 80
           + LE LDLS N I G  +  W+   G   L+ L +S N ++  +D     NL++L + SN
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSN 210
Query: 81  LLQGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNS 138
                +P L     +  L IS N L+G+   +    + ++ LN+S+N   G IP  L   
Sbjct: 211 NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLK 269
Query: 139 TLETLDLGMNNFQGSIPQTNAKGCN-LTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN 197
           +L+ L L  N F G IP   +  C+ LT L LSGNH  G +PP   +C  L+ L + +NN
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 198 LSGPIP-ECLGNSTRLSFLDVGNNSLSGPIPECLAN--STLEILDMRMNKFSGSL----- 249
            SG +P + L     L  LD+  N  SG +PE L N  ++L  LD+  N FSG +     
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 250 --PQNICKKLCF------GPLPPSLVNCQYLEVLDVGNNQIDDT 285
             P+N  ++L        G +PP+L NC  L  L +  N +  T
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 86/210 (40%), Gaps = 70/210 (33%)
Query: 122 LSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSI------------------------PQT 157
           LSN+ ++G +     +++L +LDL  N+  G +                        P  
Sbjct: 84  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 158 NAKGCNLTSLR------------------------------LSGNHLEGPLPPSLINCVN 187
            + G  L SL                               +SGN + G +  S   CVN
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVN 201
Query: 188 LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST-LEILDMRMNKFS 246
           L+FLDV +NN S  IP  LG+ + L  LD+  N LSG     ++  T L++L++  N+F 
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 247 GSLPQNICKKLCFGPLPPSLVNCQYLEVLD 276
           G +P          PLP  L + QYL + +
Sbjct: 261 GPIP----------PLP--LKSLQYLSLAE 278

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 140/301 (46%), Gaps = 28/301 (9%)
Query: 6   QVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS-I 64
            V + N S     L     L+ LD+S N++ G     +       L+ L +S N     I
Sbjct: 203 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST--CTELKLLNISSNQFVGPI 260
Query: 65  DHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLL----ISNNSLTGEIPSSFCNLSSIQYL 120
             LP K+LQYL+L  N   G +PD        L    +S N   G +P  F + S ++ L
Sbjct: 261 PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 320
Query: 121 NLSNNSLSGQIPQ--CLGNSTLETLDLGMNNFQGSIPQTNAK-GCNLTSLRLSGNHLEGP 177
            LS+N+ SG++P    L    L+ LDL  N F G +P++      +L +L LS N+  GP
Sbjct: 321 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 380
Query: 178 LPPSLINCVN----LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN- 232
           + P+L  C N    LQ L + NN  +G IP  L N + L  L +  N LSG IP  L + 
Sbjct: 381 ILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 233 STLEILDMRMNKFSGSLPQNI--CKKL---------CFGPLPPSLVNCQYLEVLDVGNNQ 281
           S L  L + +N   G +PQ +   K L           G +P  L NC  L  + + NN+
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 282 I 282
           +
Sbjct: 499 L 499

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 41/212 (19%)
Query: 93  MVQLLISNNSLTGEIPS--SFCNLSSIQYLNLSNNSLS--GQIPQCLGNSTLETLDLGMN 148
           +  L +S NSL+G + +  S  + S +++LN+S+N+L   G++   L  ++LE LDL  N
Sbjct: 99  LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 149 NFQGS--IPQTNAKGCN-LTSLRLSGNHLEGPLP---------------------PSLIN 184
           +  G+  +    + GC  L  L +SGN + G +                      P L +
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD 218
Query: 185 CVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNK 244
           C  LQ LD+  N LSG     +   T L  L++ +N   GPIP  L   +L+ L +  NK
Sbjct: 219 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENK 277
Query: 245 FSGSLPQ---NICKKLC---------FGPLPP 264
           F+G +P      C  L          +G +PP
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 110/261 (42%), Gaps = 49/261 (18%)
Query: 12  ISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT-----SIDH 66
           +   P  +    QL +L ++   + G IP ++  I   TL  L  S N L+     SI  
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--KTLVTLDFSYNALSGTLPPSISS 147
Query: 67  LPWKNLQYLTLDSNLLQGSLPD----LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNL 122
           LP  NL  +T D N + G++PD           + IS N LTG+IP +F NL+ + +++L
Sbjct: 148 LP--NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204
Query: 123 SNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL 182
           S N L G      G+           N Q      N+   +L  + LS N          
Sbjct: 205 SRNMLEGDASVLFGSD---------KNTQKIHLAKNSLAFDLGKVGLSKN---------- 245
Query: 183 INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRM 242
                L  LD+ NN + G +P+ L     L  L+V  N+L G IP+      L+  D+  
Sbjct: 246 -----LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVS- 296
Query: 243 NKFSGSLPQNICKKLCFGPLP 263
                +   N C  LC  PLP
Sbjct: 297 -----AYANNKC--LCGSPLP 310

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 130 QIPQCLGNST-----LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG--PLPPSL 182
           QI + LGN T     L T D     + G +  T+ +   + +L LSG +L    P+P SL
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72
Query: 183 INCVNLQFLDVGN-NNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDM 240
            N   L FL +G  NNL GPIP  +   T+L +L + + ++SG IP+ L+   TL  LD 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 241 RMNKFSGSLPQNI 253
             N  SG+LP +I
Sbjct: 133 SYNALSGTLPPSI 145

>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 117/265 (44%), Gaps = 77/265 (29%)
Query: 80  NLLQGSLPDLPPHMVQLLISNNSLTG--EIPSSFCNL--------------SSIQYLNLS 123
           NL   SLP+LPPH+  L+ S NSLT   E+P S  +L                ++YL +S
Sbjct: 80  NLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVS 139
Query: 124 NNSLSGQIPQCLGNSTLETLDLGMNNFQG--SIP---QTNAKGCN-------------LT 165
           NN L  ++P+   +S L+ +D+  N+ +    +P   +  A G N             LT
Sbjct: 140 NNQLE-KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLT 198
Query: 166 SLRLSGNHLEG--PLPPSLINCV-------------NLQFLDV--GNNNLSGPIPECLGN 208
           ++    N L+    LP SL + V             NL FL     +NNL   +P+    
Sbjct: 199 AIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL--- 255
Query: 209 STRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSG--SLPQNI---------CKKL 257
              L  L+V +N L+  +PE     +L  LD+  N FSG   LP N+          + L
Sbjct: 256 PPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL 312
Query: 258 CFGPLPPSLVNCQYLEVLDVGNNQI 282
           C   LPPS      LE L+V NN++
Sbjct: 313 CD--LPPS------LEELNVSNNKL 329

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	347
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-62
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-45
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  249 bits (638), Expect = 1e-76
 Identities = 95/318 (29%), Positives = 140/318 (44%), Gaps = 23/318 (7%)

Query: 14  EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT-----SIDHLP 68
             P    +   LE L LS N   G +P       +  L+ L LS N  +     S+ +L 
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLL-KMRGLKVLDLSFNEFSGELPESLTNL- 366

Query: 69  WKNLQYLTLDSNLLQGSLPD-----LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLS 123
             +L  L L SN   G +           + +L + NN  TG+IP +  N S +  L+LS
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426

Query: 124 NNSLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL 182
            N LSG IP  LG+ S L  L L +N  +G IPQ       L +L L  N L G +P  L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

Query: 183 INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMR 241
            NC NL ++ + NN L+G IP+ +G    L+ L + NNS SG IP  L +  +L  LD+ 
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546

Query: 242 MNKFSGSLPQNICKK-------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLY--WLDV 292
            N F+G++P  + K+          G     + N    +      N ++   +    L+ 
Sbjct: 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606

Query: 293 LLQLQVLILRSNRFWGPI 310
           L       + S  + G  
Sbjct: 607 LSTRNPCNITSRVYGGHT 624

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  209 bits (535), Expect = 7e-62
 Identities = 84/301 (27%), Positives = 133/301 (44%), Gaps = 29/301 (9%)

Query: 23  HQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW----KNLQYLTLD 78
             L  LDLS+N + G + +         L+FL +S N L     +       +L+ L L 
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159

Query: 79  SNLLQGSLPDLP------PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP 132
           +N + G+             +  L IS N ++G++        ++++L++S+N+ S  IP
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP 217

Query: 133 QCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLD 192
                S L+ LD+  N   G   +  +    L  L +S N   GP+PP      +LQ+L 
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275

Query: 193 VGNNNLSGPIPECL-GNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLP 250
           +  N  +G IP+ L G    L+ LD+  N   G +P    + S LE L +  N FSG LP
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

Query: 251 QNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWL-DVLLQLQVLILRSNRFWGP 309
                         +L+  + L+VLD+  N+        L ++   L  L L SN F GP
Sbjct: 336 ------------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383

Query: 310 I 310
           I
Sbjct: 384 I 384

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  179 bits (456), Expect = 1e-50
 Identities = 86/309 (27%), Positives = 131/309 (42%), Gaps = 33/309 (10%)

Query: 14  EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT-----SIDHLP 68
           + P  L    +L  L LS N + G IPS +  +    L+ L L  N+L       + ++ 
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL--SKLRDLKLWLNMLEGEIPQELMYVK 466

Query: 69  WKNLQYLTLDSNLLQGSLPD---LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
              L+ L LD N L G +P       ++  + +SNN LTGEIP     L ++  L LSNN
Sbjct: 467 --TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

Query: 126 SLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLIN 184
           S SG IP  LG+  +L  LDL  N F G+IP          S +++ N + G     + N
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIP----AAMFKQSGKIAANFIAGKRYVYIKN 580

Query: 185 CVNLQFLDVGNN--NLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMR 241
               +      N     G   E L   +  +  ++ +    G       N  ++  LDM 
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 242 MNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLIL 301
            N  SG +P               + +  YL +L++G+N I  +    +  L  L +L L
Sbjct: 641 YNMLSGYIP-------------KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687

Query: 302 RSNRFWGPI 310
            SN+  G I
Sbjct: 688 SSNKLDGRI 696

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  168 bits (427), Expect = 7e-47
 Identities = 73/280 (26%), Positives = 120/280 (42%), Gaps = 33/280 (11%)

Query: 14  EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT-----SIDHLP 68
           E P  L     LE L L  N + G IPS + +     L ++ LS N LT      I  L 
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT--NLNWISLSNNRLTGEIPKWIGRLE 514

Query: 69  WKNLQYLTLDSNLLQGSLPDLP---PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
             NL  L L +N   G++P        ++ L ++ N   G IP++    S      ++ N
Sbjct: 515 --NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAAN 568

Query: 126 SLSGQIPQCLGNSTLET---LDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL 182
            ++G+    + N  ++        +  FQG   +   +        ++     G   P+ 
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628

Query: 183 INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMR 241
            N  ++ FLD+  N LSG IP+ +G+   L  L++G+N +SG IP+ + +   L ILD+ 
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688

Query: 242 MNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ 281
            NK  G +PQ             ++     L  +D+ NN 
Sbjct: 689 SNKLDGRIPQ-------------AMSALTMLTEIDLSNNN 715

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  164 bits (417), Expect = 2e-45
 Identities = 71/283 (25%), Positives = 107/283 (37%), Gaps = 46/283 (16%)

Query: 14  EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP----- 68
           E P  L     L W+ LS N++ G IP W+  +    L  L LS N  +   ++P     
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL--ENLAILKLSNNSFS--GNIPAELGD 536

Query: 69  WKNLQYLTLDSNLLQGSLP-------------------------DLPPHMVQLLISNNSL 103
            ++L +L L++NL  G++P                         D          +    
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

Query: 104 TGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGC 162
            G        LS+    N+++    G       N  ++  LD+  N   G IP+      
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656

Query: 163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSL 222
            L  L L  N + G +P  + +   L  LD+ +N L G IP+ +   T L+ +D+ NN+L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

Query: 223 SGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPS 265
           SGPIPE     T        N             LC  PLP  
Sbjct: 717 SGPIPEMGQFETFPPAKFLNNPG-----------LCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  160 bits (408), Expect = 4e-44
 Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 24/239 (10%)

Query: 92  HMVQLLISNNSLT---GEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMN 148
            +  + +S+  L      + SS  +L+ ++ L LSN+ ++G +     +++L +LDL  N
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 149 NFQGSIPQTNAKG--CNLTSLRLSGNHLEGPLP-PSLINCVNLQFLDVGNNNLSGPIPEC 205
           +  G +    + G    L  L +S N L+ P      +   +L+ LD+  N++SG     
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 206 L---GNSTRLSFLDVGNNSLSGPIPECLANST-LEILDMRMNKFSGSLPQ-NICKKLCF- 259
                    L  L +  N +SG +   ++    LE LD+  N FS  +P    C  L   
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL 228

Query: 260 --------GPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI 310
                   G    ++  C  L++L++ +NQ           L  LQ L L  N+F G I
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEI 285

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  135 bits (341), Expect = 3e-35
 Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 22/219 (10%)

Query: 112 CNLSSIQYLNLSNNSLS---GQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSL 167
           C    +  ++LS+  L+     +   L + + LE+L L  ++  GS+        +LTSL
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF-KCSASLTSL 105

Query: 168 RLSGNHLEGPLPP--SLINCVNLQFLDVGNNNLSGPIP-ECLGNSTRLSFLDVGNNSLSG 224
            LS N L GP+    SL +C  L+FL+V +N L  P           L  LD+  NS+SG
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 225 PIPECLAN----STLEILDMRMNKFSGSLPQNICKKLCF---------GPLPPSLVNCQY 271
                         L+ L +  NK SG +  + C  L F           + P L +C  
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-PFLGDCSA 224

Query: 272 LEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI 310
           L+ LD+  N++   F   +    +L++L + SN+F GPI
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  185 bits (471), Expect = 3e-56
 Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 26/250 (10%)

Query: 25  LEWLDLSK-NQIRGRIPSWMWDIGVHTLQFLILSQNVLT-----SIDHLPWKNLQYLTLD 78
           L +L +   N + G IP  +  +    L +L ++   ++      +  +  K L  L   
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKL--TQLHYLYITHTNVSGAIPDFLSQI--KTLVTLDFS 133

Query: 79  SNLLQGSLPD---LPPHMVQLLISNNSLTGEIPSSFCNLSS-IQYLNLSNNSLSGQIPQC 134
            N L G+LP      P++V +    N ++G IP S+ + S     + +S N L+G+IP  
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 135 LGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVG 194
             N  L  +DL  N  +G          N   + L+ N L   L   +    NL  LD+ 
Sbjct: 194 FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLR 252

Query: 195 NNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNIC 254
           NN + G +P+ L     L  L+V  N+L G IP+       ++     N           
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN----------- 301

Query: 255 KKLCFGPLPP 264
           K LC  PLP 
Sbjct: 302 KCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  177 bits (452), Expect = 1e-53
 Identities = 63/251 (25%), Positives = 100/251 (39%), Gaps = 26/251 (10%)

Query: 70  KNLQYLTLDSNLLQGSLPDLPPHMVQL-------LISNNSLTGEIPSSFCNLSSIQYLNL 122
             +  L L    L    P +P  +  L       +   N+L G IP +   L+ + YL +
Sbjct: 50  YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 123 SNNSLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPS 181
           ++ ++SG IP  L    TL TLD   N   G++P + +   NL  +   GN + G +P S
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 182 LINCVNL-QFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILD 239
             +   L   + +  N L+G IP    N   L+F+D+  N L G       +    + + 
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVL 299
           +  N  +  L                +   + L  LD+ NN+I  T    L  L  L  L
Sbjct: 228 LAKNSLAFDLG--------------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 300 ILRSNRFWGPI 310
            +  N   G I
Sbjct: 274 NVSFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  176 bits (449), Expect = 4e-53
 Identities = 66/272 (24%), Positives = 113/272 (41%), Gaps = 41/272 (15%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYL 75
            D     +++  LDLS   +    P                   + +S+ +LP   L +L
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYP-------------------IPSSLANLP--YLNFL 81

Query: 76  TL-DSNLLQGSLPD---LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQI 131
            +   N L G +P        +  L I++ +++G IP     + ++  L+ S N+LSG +
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 132 PQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNL-TSLRLSGNHLEGPLPPSLINCVNLQ 189
           P  + +   L  +    N   G+IP +      L TS+ +S N L G +PP+  N  NL 
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLA 200

Query: 190 FLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSL 249
           F+D+  N L G      G+      + +  NSL+  + +   +  L  LD+R N+  G+ 
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT- 259

Query: 250 PQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ 281
                       LP  L   ++L  L+V  N 
Sbjct: 260 ------------LPQGLTQLKFLHSLNVSFNN 279

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  164 bits (417), Expect = 2e-48
 Identities = 54/228 (23%), Positives = 91/228 (39%), Gaps = 17/228 (7%)

Query: 99  SNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQ--IPQCLGN-STLETLDL-GMNNFQGSI 154
            N +  G +  +      +  L+LS  +L     IP  L N   L  L + G+NN  G I
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 155 PQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSF 214
           P   AK   L  L ++  ++ G +P  L     L  LD   N LSG +P  + +   L  
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 215 LDVGNNSLSGPIPECLANST--LEILDMRMNKFSGSLPQNICK-KLCF---------GPL 262
           +    N +SG IP+   + +     + +  N+ +G +P       L F         G  
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA 213

Query: 263 PPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI 310
                + +  + + +  N +    L  + +   L  L LR+NR +G +
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTL 260

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  135 bits (342), Expect = 2e-37
 Identities = 56/217 (25%), Positives = 84/217 (38%), Gaps = 41/217 (18%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT-----SIDHLPWKNLQYLTLD 78
            L  LD S N + G +P  +  +    L  +    N ++     S      K    +T+ 
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSL--PNLVGITFDGNRISGAIPDSYGSFS-KLFTSMTIS 182

Query: 79  SNLLQGSLPD----LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQC 134
            N L G +P     L  ++  + +S N L G+    F +  + Q ++L+ NSL+  + + 
Sbjct: 183 RNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK- 239

Query: 135 LGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVG 194
           +G S                        NL  L L  N + G LP  L     L  L+V 
Sbjct: 240 VGLSK-----------------------NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 195 NNNLSGPIPECLGNSTRLSFLDV-GNNSLSG-PIPEC 229
            NNL G IP+  GN  R        N  L G P+P C
Sbjct: 277 FNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  114 bits (287), Expect = 2e-29
 Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 17/186 (9%)

Query: 141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG--PLPPSLINCVNLQFLDVGN-NN 197
            T D     + G +  T+ +   + +L LSG +L    P+P SL N   L FL +G  NN
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 198 LSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNI--C 254
           L GPIP  +   T+L +L + + ++SG IP+ L+   TL  LD   N  SG+LP +I   
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 255 KKLCF---------GPLPPSLVNCQYL-EVLDVGNNQIDDTFLYWLDVLLQLQVLILRSN 304
             L           G +P S  +   L   + +  N++           L L  + L  N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLNLAFVDLSRN 207

Query: 305 RFWGPI 310
              G  
Sbjct: 208 MLEGDA 213

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.9 bits (159), Expect = 4e-12
 Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 45/142 (31%)

Query: 14  EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQ 73
           +   +  +    + + L+KN +   +           +                  KNL 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK---------VGLS---------------KNLN 247

Query: 74  YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ 133
            L L                      NN + G +P     L  +  LN+S N+L G+IPQ
Sbjct: 248 GLDL---------------------RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 134 CLGNSTLETLDLGMNNFQGSIP 155
                  +      N      P
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSP 308

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  155 bits (395), Expect = 1e-42
 Identities = 65/317 (20%), Positives = 113/317 (35%), Gaps = 34/317 (10%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHT-LQFLILSQNVLTSIDH-- 66
             +++ PD L T   +  L+L+ NQ+R    +   +   ++ L  L +  N ++ ++   
Sbjct: 14  LKLTQVPDDLPTN--ITVLNLTHNQLRRLPAA---NFTRYSQLTSLDVGFNTISKLEPEL 68

Query: 67  -LPWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNL 122
                 L+ L L  N L            ++ +L + +NS+     + F    ++  L+L
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 123 SNNSLSGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGCN--LTSLRLSGNHLEGPLP 179
           S+N LS            L+ L L  N  Q    +      N  L  L LS N ++   P
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188

Query: 180 PSLINCVNLQFLDVGNNNLSGPIPECLG---NSTRLSFLDVGNNSLSGPIPECLAN---S 233
                   L  L + N  L   + E L     +T +  L + N+ LS            +
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248

Query: 234 TLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVL 293
            L +LD+  N  +                  S      LE   +  N I   F + L  L
Sbjct: 249 NLTMLDLSYNNLNVVGND-------------SFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 294 LQLQVLILRSNRFWGPI 310
             ++ L L+ +     I
Sbjct: 296 FNVRYLNLKRSFTKQSI 312

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  149 bits (378), Expect = 3e-40
 Identities = 62/317 (19%), Positives = 104/317 (32%), Gaps = 47/317 (14%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW---KNLQYLTLDSN 80
            L  LDLS N +            +  L++  L  N +  +         N++YL L  +
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFA--WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 81  LLQGSLPDLP------------PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 128
             + S+                  +  L + +N + G   + F  L +++YL+LSN+  S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 129 GQIP-----QCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI 183
            +         L +S L  L+L  N          +   +L  L L  N +   L     
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 184 -NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSG--PIPECLAN-STLEILD 239
               N+  + +  N               L  L +   +L      P        L ILD
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD--------TFLYWLD 291
           +  N  +                   L   + LE+LD+ +N +            +Y+L 
Sbjct: 487 LSNNNIANINDD-------------MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533

Query: 292 VLLQLQVLILRSNRFWG 308
            L  L +L L SN F  
Sbjct: 534 GLSHLHILNLESNGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  146 bits (370), Expect = 3e-39
 Identities = 67/334 (20%), Positives = 108/334 (32%), Gaps = 41/334 (12%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNL 72
                    L  L L  N I+    +         L  L LS N L+S      +  +NL
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQVQLENL 147

Query: 73  QYLTLDSNLLQGSLPDL-----PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127
           Q L L +N +Q    +         + +L +S+N +    P  F  +  +  L L+N  L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 128 SGQIPQ----CLGNSTLETLDLGMNNFQGSIPQT--NAKGCNLTSLRLSGNHLEGPLPPS 181
              + +     L N+++  L L  +    +   T    K  NLT L LS N+L      S
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 182 LINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNN---------SLSGPIPECLAN 232
                 L++  +  NN+       L     + +L++  +         SL          
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 233 -STLEILDMRMNKFSGSLPQNICK------------KLCFGPLPPSL---VNCQYLEVLD 276
              LE L+M  N   G                          L       +    L +L+
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 277 VGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI 310
           +  N+I          L  L+VL L  N     +
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  137 bits (346), Expect = 5e-36
 Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 20/243 (8%)

Query: 71  NLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQ 130
           + +        L     DLP ++  L +++N L     ++F   S +  L++  N++S  
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 131 IPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQ 189
            P+       L+ L+L  N       +T A   NLT L L  N ++       +   NL 
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 190 FLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA---NSTLEILDMRMNKFS 246
            LD+ +N LS            L  L + NN +     E L    NS+L+ L++  N+  
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 247 GSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWL---DVLLQLQVLILRS 303
                           P        L  L + N Q+  +    L        ++ L L +
Sbjct: 185 -------------EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 304 NRF 306
           ++ 
Sbjct: 232 SQL 234

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  135 bits (342), Expect = 2e-35
 Identities = 57/316 (18%), Positives = 112/316 (35%), Gaps = 38/316 (12%)

Query: 18  ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW---KNLQY 74
            L  +       +S   +            +  L+ L +  N +  I    +    NL+Y
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQ--WLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357

Query: 75  LTLDSNLLQ------GSLPDLPPHMVQLL-ISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127
           L+L ++          +   L    + +L ++ N ++     +F  L  ++ L+L  N +
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417

Query: 128 SGQIPQCL--GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG--PLPPSLI 183
             ++      G   +  + L  N +      + A   +L  L L    L+     P    
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477

Query: 184 NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS--------GPIPECLAN-ST 234
              NL  LD+ NNN++    + L    +L  LD+ +N+L+        G     L   S 
Sbjct: 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 235 LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLL 294
           L IL++  N F     +                +   L+++D+G N ++       +  +
Sbjct: 538 LHILNLESNGFDEIPVE-------------VFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 295 QLQVLILRSNRFWGPI 310
            L+ L L+ N      
Sbjct: 585 SLKSLNLQKNLITSVE 600

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  132 bits (333), Expect = 3e-34
 Identities = 61/303 (20%), Positives = 108/303 (35%), Gaps = 39/303 (12%)

Query: 16  PDILRTQHQLEWLDLSKN--QIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW---K 70
            ++      L++L LS +   +R         +    L  L L++N ++ I+   +    
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405

Query: 71  NLQYLTLDSNLLQGSLPDLP----PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126
           +L+ L L  N +   L         ++ ++ +S N       +SF  + S+Q L L   +
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465

Query: 127 LSG--QIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE-------- 175
           L      P        L  LDL  NN              L  L L  N+L         
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525

Query: 176 GPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-ST 234
           G     L    +L  L++ +N       E   +   L  +D+G N+L+        N  +
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585

Query: 235 LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID------DTFLY 288
           L+ L+++ N  +    +       FGP   +L        LD+  N  D        F+ 
Sbjct: 586 LKSLNLQKNLITSVEKKV------FGPAFRNL------TELDMRFNPFDCTCESIAWFVN 633

Query: 289 WLD 291
           W++
Sbjct: 634 WIN 636

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 34/169 (20%), Positives = 51/169 (30%), Gaps = 35/169 (20%)

Query: 162 CNLTSL---------------------RLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG 200
            +                          L+ N L      +      L  LDVG N +S 
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 201 PIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCF 259
             PE       L  L++ +N LS    +  A  + L  L +  N                
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN-------- 115

Query: 260 GPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG 308
                  V  + L  LD+ +N +  T L     L  LQ L+L +N+   
Sbjct: 116 -----PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 15/142 (10%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW---KNL 72
              L+    L  L+L  N           D+    L+ + L  N L ++    +    +L
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDL--FELKIIDLGLNNLNTLPASVFNNQVSL 586

Query: 73  QYLTLDSNLLQG----SLPDLPPHMVQLLISNNSLTGEIPS-----SFCNLSSIQYLNLS 123
           + L L  NL+             ++ +L +  N       S     ++ N +      LS
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELS 646

Query: 124 NNSLSGQIPQCLGNSTLETLDL 145
           ++ L    P       +   D 
Sbjct: 647 SHYLCNTPPH-YHGFPVRLFDT 667

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  145 bits (367), Expect = 5e-39
 Identities = 58/337 (17%), Positives = 120/337 (35%), Gaps = 62/337 (18%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW-----------KNL 72
            L  +++       ++P+++  +    +Q + ++ N   S + L             + +
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKAL--PEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 73  QYLTLDSNLLQ--------GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN 124
           Q + +  N L+          +  L      L    N L G++P+ F +   +  LNL+ 
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKL----GMLECLYNQLEGKLPA-FGSEIKLASLNLAY 362

Query: 125 NSLSGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEG------ 176
           N ++       G +  +E L    N  +      +AK    ++++  S N +        
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 177 -PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSG-------PIPE 228
            PL P+    +N+  +++ NN +S    E     + LS +++  N L+           E
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482

Query: 229 CLANST-LEILDMRMNKFSGSLPQNICKKLC------------FGPLPPSLVNCQYLEVL 275
              N+  L  +D+R NK +  L  +                  F   P   +N   L+  
Sbjct: 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGF 541

Query: 276 DVGN------NQIDDTFLYWLDVLLQLQVLILRSNRF 306
            + N      N+    +   + +   L  L + SN  
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  144 bits (364), Expect = 2e-38
 Identities = 63/349 (18%), Positives = 119/349 (34%), Gaps = 55/349 (15%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRG-----RIPSWMWDIGVHT-LQFLILSQNVLTSI 64
           N+++ P  L+   +++ ++++ N+             + D  V   +Q + +  N L + 
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 65  DHLPW----KNLQYLTLDSNLLQGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQ 118
                    K L  L    N L+G LP       +  L ++ N +T    +       ++
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380

Query: 119 YLNLSNNSLSGQIPQCLGN---STLETLDLGMNNFQG-------SIPQTNAKGCNLTSLR 168
            L+ ++N L   IP        S +  +D   N            +  T  KG N++S+ 
Sbjct: 381 NLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 169 LSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG-------PIPECLGNSTRLSFLDVGNNS 221
           LS N +             L  +++  N L+           E   N+  L+ +D+  N 
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 222 LSGPIPECLANST---LEILDMRMNKFSGSLPQNI--CKKL---------------CFGP 261
           L+  + +    +T   L  +D+  N FS   P        L                   
Sbjct: 500 LTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

Query: 262 LPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI 310
            P  +  C  L  L +G+N I         +   + VL ++ N      
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRKVN---EKITPNISVLDIKDNPNISID 603

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  134 bits (338), Expect = 5e-35
 Identities = 46/321 (14%), Positives = 99/321 (30%), Gaps = 46/321 (14%)

Query: 10  CNISEFPDI-LRTQHQLEWLDLSKNQIRGRIPSWMWDIG-VHTLQFLILSQNVLTSIDHL 67
                 P + L +  ++  L L      GR+P     IG +  L+ L L  +     + L
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD---AIGQLTELEVLALGSHGEKVNERL 123

Query: 68  PW-------KNLQYLTLDSNLLQGSLPDLPP-----HMVQLLISNNSLTGEIPSSFCNLS 115
                     + +         Q +  D  P      +++  I+++     I  S     
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183

Query: 116 SIQYLNLSNNSLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHL 174
               +   +N+++  + + +   + L    +G + F         +  N    +      
Sbjct: 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-- 240

Query: 175 EGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP--------- 225
                    N  +L  ++V N      +P  L     +  ++V  N              
Sbjct: 241 ---EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 226 IPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT 285
           + +      ++I+ +  N                 P+  SL   + L +L+   NQ+ + 
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKT------------FPVETSLQKMKKLGMLECLYNQL-EG 344

Query: 286 FLYWLDVLLQLQVLILRSNRF 306
            L      ++L  L L  N+ 
Sbjct: 345 KLPAFGSEIKLASLNLAYNQI 365

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  133 bits (336), Expect = 1e-34
 Identities = 59/325 (18%), Positives = 112/325 (34%), Gaps = 60/325 (18%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIG-VHTLQFLILSQNVLTSID-----HLPW 69
              L+   +L  L+   NQ+ G++P+     G    L  L L+ N +T I          
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKLPA----FGSEIKLASLNLAYNQITEIPANFCGFT-- 376

Query: 70  KNLQYLTLDSNLLQGSLPDLP-----PHMVQLLISNNSLTG-------EIPSSFCNLSSI 117
           + ++ L+   N L+  +P++        M  +  S N +          +  +     ++
Sbjct: 377 EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 118 QYLNLSNNSLSGQIPQCLGNST-LETLDLGMNNFQG-------SIPQTNAKGCNLTSLRL 169
             +NLSNN +S    +     + L +++L  N              +       LTS+ L
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 170 SGNHLEGPLPPSLI--NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGN------NS 221
             N L   L           L  +D+  N+ S   P    NS+ L    + N      N 
Sbjct: 496 RFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553

Query: 222 LSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNN 280
                PE +    +L  L +  N     + + I   +                VLD+ +N
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITPNI---------------SVLDIKDN 597

Query: 281 QIDDTFLYWLDVLLQLQVLILRSNR 305
                 L ++   ++  + +L  ++
Sbjct: 598 PNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (256), Expect = 4e-24
 Identities = 29/222 (13%), Positives = 75/222 (33%), Gaps = 15/222 (6%)

Query: 99  SNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLGMNNFQG----S 153
             +    +   S  +   +  L+L     SG++P  +G  + LE L LG +  +      
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 154 IPQTNAKGCNLTSLRLSGNHLEGPLPPSLI--NCVNLQFLDVGNNNLSGPIPECLGNSTR 211
            P+  +   +    +    H +          +  +L    + ++     I +    + +
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184

Query: 212 LSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLC------FGPLPP 264
            + +   +N+++  + + +   + L    M  + F         +         +     
Sbjct: 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243

Query: 265 SLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
              N + L  ++V N         +L  L ++Q++ +  NR 
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.9 bits (200), Expect = 6e-17
 Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 19/177 (10%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDI-----GVHTLQFLILSQNVLTSI----DH 66
            ++  T   L  ++L  N +     + + D        + L  + L  N LT +      
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509

Query: 67  LPWKNLQYLTLDSNLLQ------GSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQ 118
                L  + L  N          +   L       Q     N    E P       S+ 
Sbjct: 510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569

Query: 119 YLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE 175
            L + +N +   + + +  + +  LD+  N                    L  +  +
Sbjct: 570 QLQIGSNDIRK-VNEKITPN-ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 17/152 (11%), Positives = 42/152 (27%), Gaps = 15/152 (9%)

Query: 163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGP----IPECLGNSTRLSFLDVG 218
            +T L L G    G +P ++     L+ L +G++          P+ +  +         
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 219 NNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVG 278
                    +       +  D+  +  +               +  S         +   
Sbjct: 142 RMHYQKTFVDYDPR--EDFSDLIKDCINSDPQ--------QKSIKKSSRITLKDTQIGQL 191

Query: 279 NNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI 310
           +N I       +  L +L+   + ++ F    
Sbjct: 192 SNNIT-FVSKAVMRLTKLRQFYMGNSPFVAEN 222

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  144 bits (366), Expect = 6e-39
 Identities = 57/253 (22%), Positives = 100/253 (39%), Gaps = 18/253 (7%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW 69
           C   +FP +      L+ L  + N+           + + +L+FL LS+N L+       
Sbjct: 314 CKFGQFPTL--KLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 70  -----KNLQYLTLDSNLLQGSLPDL--PPHMVQLLISNNSLTGEIPSS-FCNLSSIQYLN 121
                 +L+YL L  N +     +      +  L   +++L      S F +L ++ YL+
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 122 LSNNSLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLP 179
           +S+              S+LE L +  N+FQ +          NLT L LS   LE   P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 180 PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN--STLEI 237
            +  +  +LQ L++ +NN              L  LD   N +     + L +  S+L  
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547

Query: 238 LDMRMNKFSGSLP 250
           L++  N F+ +  
Sbjct: 548 LNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (354), Expect = 3e-37
 Identities = 52/303 (17%), Positives = 95/303 (31%), Gaps = 24/303 (7%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHT-LQFLILSQNVLTSIDHLPW-KNLQ 73
              L     L   +     +   +   +      T +    L    +  +    +    Q
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 74  YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS--GQI 131
           +L L +             + +L  ++N        S  +L S+++L+LS N LS  G  
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 132 PQCLGNST-LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI-NCVNLQ 189
            Q    +T L+ LDL  N     +         L  L    ++L+     S+  +  NL 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 190 FLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN--STLEILDMRMNKFSG 247
           +LD+ + +            + L  L +  NS        +      L  LD+   +   
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 248 SLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFW 307
             P              +  +   L+VL++ +N       +    L  LQVL    N   
Sbjct: 485 LSPT-------------AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

Query: 308 GPI 310
              
Sbjct: 532 TSK 534

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  124 bits (314), Expect = 8e-32
 Identities = 65/309 (21%), Positives = 111/309 (35%), Gaps = 35/309 (11%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW 69
            N  + PD L      + LDLS N +R       +      LQ L LS+  + +I+   +
Sbjct: 17  LNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAY 72

Query: 70  KNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
           ++L +L+                   L+++ N +      +F  LSS+Q L     +L+ 
Sbjct: 73  QSLSHLS------------------TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 130 QIPQCLGN-STLETLDLGMNNFQG-SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVN 187
                +G+  TL+ L++  N  Q   +P+  +   NL  L LS N ++      L     
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 188 LQF----LDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE--CLANSTLEILDMR 241
           +      LD+  N ++   P       RL  L + NN  S  + +      + LE+  + 
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 242 MNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLIL 301
           + +F          K     L    +    L  LD   + I D F      L  +    L
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC----LTNVSSFSL 289

Query: 302 RSNRFWGPI 310
            S       
Sbjct: 290 VSVTIERVK 298

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  124 bits (313), Expect = 1e-31
 Identities = 53/246 (21%), Positives = 85/246 (34%), Gaps = 25/246 (10%)

Query: 70  KNLQYLTLDSNLLQGSLP-DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 128
            N+ Y  ++ N     +P +LP     L +S N L      SF +   +Q L+LS   + 
Sbjct: 8   PNITYQCMELNFY--KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 129 GQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVN 187
                   + S L TL L  N  Q       +   +L  L     +L       + +   
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 188 LQFLDVGNNNL-SGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-----STLEILDMR 241
           L+ L+V +N + S  +PE   N T L  LD+ +N +       L            LD+ 
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 242 MNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLY-WLDVLLQLQVLI 300
           +N  +               + P       L  L + NN      +   +  L  L+V  
Sbjct: 186 LNPMNF--------------IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 301 LRSNRF 306
           L    F
Sbjct: 232 LVLGEF 237

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (304), Expect = 2e-30
 Identities = 60/316 (18%), Positives = 108/316 (34%), Gaps = 39/316 (12%)

Query: 13  SEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT------SIDH 66
           ++   + +       LDLS N +    P    +I    L  L L  N  +       I  
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI---RLHKLTLRNNFDSLNVMKTCIQG 223

Query: 67  LPWKNLQYLTLDSNLLQGSLPDLPPH----MVQLLISNNSLT------GEIPSSFCNLSS 116
           L    +  L L     +G+L          +  L I    L        +I   F  L++
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 117 IQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG 176
           +   +L + ++  ++     N   + L+L    F              +  RL+    +G
Sbjct: 284 VSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTL-----KLKSLKRLTFTSNKG 337

Query: 177 PLPPSLINCVNLQFLDVGNNNLS--GPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST 234
               S ++  +L+FLD+  N LS  G   +    +T L +LD+  N +       L    
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

Query: 235 LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLL 294
           LE LD + +        ++             ++ + L  LD+ +      F    + L 
Sbjct: 398 LEHLDFQHSNLKQMSEFSV------------FLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 295 QLQVLILRSNRFWGPI 310
            L+VL +  N F    
Sbjct: 446 SLEVLKMAGNSFQENF 461

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  104 bits (261), Expect = 8e-25
 Identities = 41/216 (18%), Positives = 73/216 (33%), Gaps = 12/216 (5%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW 69
             +           QLE LD   + ++      ++   +  L +L +S        +  +
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIF 441

Query: 70  KN---LQYLTLDSNLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNL 122
                L+ L +  N  Q +          ++  L +S   L    P++F +LSS+Q LN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 123 SNNSLSGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEG--PL 178
           S+N+              L+ LD  +N+   S  Q       +L  L L+ N        
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

Query: 179 PPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSF 214
              L    + + L V    +    P        LS 
Sbjct: 562 QSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (252), Expect = 1e-23
 Identities = 40/203 (19%), Positives = 71/203 (34%), Gaps = 16/203 (7%)

Query: 112 CNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSG 171
             + +I Y      +   +IP  L  S  + LDL  N  +     +      L  L LS 
Sbjct: 5   EVVPNITY-QCMELNFY-KIPDNLPFS-TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 172 NHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA 231
             ++     +  +  +L  L +  N +           + L  L     +L+      + 
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 232 N-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWL 290
           +  TL+ L++  N                  LP    N   LE LD+ +N+I   +   L
Sbjct: 122 HLKTLKELNVAHNLIQS------------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 291 DVLLQLQVLILRSNRFWGPIGKL 313
            VL Q+ +L L  +    P+  +
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFI 192

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 11/139 (7%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW---KNL 72
           PDI      L +LDLS+ Q+    P+      + +LQ L +S N   S+D  P+    +L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

Query: 73  QYLTLDSNLLQGSLPD----LPPHMVQLLISNNSLTGEIPSS--FCNLSSIQYLNLSNNS 126
           Q L    N +  S        P  +  L ++ N              +   + L +    
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 580

Query: 127 LSGQIPQCLGNSTLETLDL 145
           +    P       + +L++
Sbjct: 581 MECATPSDKQGMPVLSLNI 599

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  141 bits (356), Expect = 3e-37
 Identities = 64/344 (18%), Positives = 116/344 (33%), Gaps = 57/344 (16%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVH-------TLQFLILSQNVLTS 63
           N+++ PD L    +L+ L+++ N+             +         +Q   +  N L  
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 64  IDHLPW----KNLQYLTLDSNLLQGSLPDL--PPHMVQLLISNNSLTGEIPSSFC-NLSS 116
                       L  L    N ++  L        +  L +  N +  EIP  FC     
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQ 620

Query: 117 IQYLNLSNNSLSGQIPQCLGNST---LETLDLGMNNFQG-----SIPQTNAKGCNLTSLR 168
           ++ L  S+N L   IP      +   + ++D   N         S    + KG N +++ 
Sbjct: 621 VEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679

Query: 169 LSGNHLEGPLPPSLINCVNLQFLDVGNNNLS-------GPIPECLGNSTRLSFLDVGNNS 221
           LS N ++            +  + + NN ++        P      N+  L+ +D+  N 
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739

Query: 222 LSGPIPECLANST---LEILDMRMNKFSGSLPQNI--CKKL---------------CFGP 261
           L+  + +    +T   L  +D+  N FS S P       +L                   
Sbjct: 740 LTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797

Query: 262 LPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
            P  +  C  L  L +G+N I         +  QL +L +  N 
Sbjct: 798 WPTGITTCPSLIQLQIGSNDIRKVD---EKLTPQLYILDIADNP 838

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  136 bits (345), Expect = 9e-36
 Identities = 59/345 (17%), Positives = 106/345 (30%), Gaps = 56/345 (16%)

Query: 12  ISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW-- 69
                        L  ++L       ++P +++D+    LQ L ++ N   S   L    
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL--PELQSLNIACNRGISAAQLKADW 537

Query: 70  ----------KNLQYLTLDSNLLQGSLPDLP----PHMVQLLISNNSLTGEIPSSFCNLS 115
                       +Q   +  N L+             +  L   +N +      +F    
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNV 595

Query: 116 SIQYLNLSNNSLSGQIPQCLGNST--LETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGN 172
            +  L L  N +  +IP+     T  +E L    N  +      NAK    + S+  S N
Sbjct: 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN 654

Query: 173 HLEG-----PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS---- 223
            +                +N   + +  N +     E     + +S + + NN ++    
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 224 ---GPIPECLANST-LEILDMRMNKFSGSLPQNI----CKKL--------CFGPLPPSLV 267
               P      N+  L  +D+R NK + SL  +        L        CF   P   +
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773

Query: 268 NCQYLEVL------DVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
           N   L+        D   N+I   +   +     L  L + SN  
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  132 bits (333), Expect = 4e-34
 Identities = 57/334 (17%), Positives = 113/334 (33%), Gaps = 44/334 (13%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP- 68
            + +   D   T  +++   +  N +    P+      +  L  L    N +  ++    
Sbjct: 535 ADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVRHLEAFGT 593

Query: 69  WKNLQYLTLDSNLLQG---SLPDLPPHMVQLLISNNSLTGEIPS--SFCNLSSIQYLNLS 123
              L  L LD N ++            +  L  S+N L   IP+  +  ++  +  ++ S
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652

Query: 124 NNSLSGQIPQCLGN------STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE-- 175
            N +  +      +          T+ L  N  Q    +  A G  ++++ LS N +   
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

Query: 176 -----GPLPPSLINCVNLQFLDVGNNNLSGPIPE--CLGNSTRLSFLDVGNNSLSGPIPE 228
                 P   +  N   L  +D+  N L+  + +         LS +DV  N  S   P 
Sbjct: 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPT 770

Query: 229 CLANST-LEILDMRM------NKFSGSLPQNI--CKKL--------CFGPLPPSLVNCQY 271
              NS+ L+   +R       N+     P  I  C  L            +   L     
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQ 828

Query: 272 LEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
           L +LD+ +N      +  +   ++  + +L  ++
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  122 bits (307), Expect = 1e-30
 Identities = 48/323 (14%), Positives = 93/323 (28%), Gaps = 50/323 (15%)

Query: 10  CNISEFPDI-LRTQHQLEWLDLSKNQIRGRIPSWMWDIG-VHTLQFLILSQNVLTSIDHL 67
               + P + L    ++  L L+    +GR+P     IG +  L+ L    +  T    L
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD---AIGQLTELKVLSFGTHSETVSGRL 365

Query: 68  PWKN---LQYLTLDSNLLQGSLPDLPPHMVQ----------LLISNNSLTGEIPSSFCNL 114
                          + ++     +     Q           +  N  +      S  +L
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 115 SSIQYLNLSNNSLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNH 173
              Q  NL+N      I + +   + L+ +    + F       +               
Sbjct: 426 KDTQIGNLTNRI--TFISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAK 478

Query: 174 LEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP-------- 225
                  S  N  +L  +++ N      +P+ L +   L  L++  N             
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 226 -IPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID 283
            + +       ++I  M  N                 P   SL     L +LD  +N++ 
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEF------------PASASLQKMVKLGLLDCVHNKV- 585

Query: 284 DTFLYWLDVLLQLQVLILRSNRF 306
              L      ++L  L L  N+ 
Sbjct: 586 -RHLEAFGTNVKLTDLKLDYNQI 607

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.9 bits (228), Expect = 2e-20
 Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 25/226 (11%)

Query: 92  HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQC-LGNSTLETLDLGMNNF 150
            +  L ++     G +P +   L+ ++ L+   +S +           T +  +   +  
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 151 QGSIPQTNAKG-CNLTSLRLSGNHLE-----GPLPPSLINCVNLQFLDVGNNNLSGPIPE 204
           +    +        L    L  + +       P+       +    +    N ++  I +
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK 442

Query: 205 CLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPP 264
            +   T+L  +   N+  +            E  +    K   +                
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIA----VDWEDANSDYAKQYENEE-------------L 485

Query: 265 SLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI 310
           S  N + L  +++ N         +L  L +LQ L +  NR     
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.8 bits (194), Expect = 4e-16
 Identities = 22/173 (12%), Positives = 50/173 (28%), Gaps = 20/173 (11%)

Query: 5   TQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI 64
           T +   ++       +  + L  +DL  N++   +        +  L  + +S N  +S 
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSF 768

Query: 65  DHLPW--KNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNL 122
              P     L+   +                       N +  + P+      S+  L +
Sbjct: 769 PTQPLNSSQLKAFGIRHQRD---------------AEGNRILRQWPTGITTCPSLIQLQI 813

Query: 123 SNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE 175
            +N +   + + L    L  LD+  N        +           L  +  +
Sbjct: 814 GSNDIRK-VDEKLTPQ-LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.8 bits (176), Expect = 7e-14
 Identities = 17/208 (8%), Positives = 59/208 (28%), Gaps = 22/208 (10%)

Query: 120 LNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLP 179
           L+  N            +S     +  ++ +             +T L L+G   +G +P
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP 340

Query: 180 PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL--ANSTLEI 237
            ++     L+ L  G ++ +                +   + +     +     +  L +
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 238 LDMRMNKFS-----GSLPQNICKKL----------CFGPLPPSLVNCQYLEVLDVGNNQI 282
            D+  +  +       + ++    L              +  ++     L+++   N+  
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460

Query: 283 DDTFLYWLDVLLQLQVLILRSNRFWGPI 310
                 + ++ +  +       + +   
Sbjct: 461 T-----YDNIAVDWEDANSDYAKQYENE 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  134 bits (338), Expect = 4e-35
 Identities = 54/301 (17%), Positives = 97/301 (32%), Gaps = 23/301 (7%)

Query: 12  ISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKN 71
            S+          +  + L+   I+  +            Q L + +  L     L    
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKH---FKWQSLSIIRCQLKQFPTLDLPF 329

Query: 72  LQYLTLDSNLLQGSLPDLPPHMVQLL-ISNNSLTGEIPSSFCNL--SSIQYLNLSNNSLS 128
           L+ LTL  N    S   +    +  L +S N+L+     S+ +L  +S+++L+LS N   
Sbjct: 330 LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 129 GQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLINCVN 187
                 +G   L+ LD   +  +     +       L  L +S  + +       +   +
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 188 LQFLDVGNNNLSGPIPEC-LGNSTRLSFLDVGNNSLSGPIPECLANST-LEILDMRMNKF 245
           L  L +  N+           N+T L+FLD+    L             L++L+M  N  
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 246 SGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
              L                      L  LD   N+I+ +          L    L +N 
Sbjct: 510 L-FLD------------SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

Query: 306 F 306
            
Sbjct: 557 V 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  124 bits (313), Expect = 1e-31
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 17/248 (6%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW 69
           C + +FP +      L+ L L+ N+             + +L +L LS+N L+      +
Sbjct: 317 CQLKQFPTL--DLPFLKSLTLTMNKGSISFKKV----ALPSLSYLDLSRNALSFSGCCSY 370

Query: 70  K-----NLQYLTLDSNLLQGSLPDLP--PHMVQLLISNNSLTGEIP-SSFCNLSSIQYLN 121
                 +L++L L  N       +      +  L   +++L      S+F +L  + YL+
Sbjct: 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 122 LSNNSLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLP 179
           +S  +            ++L TL +  N+F+ +          NLT L LS   LE    
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 180 PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEIL 238
                   LQ L++ +NNL             LS LD   N +            +L   
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550

Query: 239 DMRMNKFS 246
           ++  N  +
Sbjct: 551 NLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  111 bits (280), Expect = 3e-27
 Identities = 57/307 (18%), Positives = 104/307 (33%), Gaps = 33/307 (10%)

Query: 15  FPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVH------TLQFLILSQNVLTSIDHLP 68
               L+    L    L   + +      +++  +       T+    L+     S D + 
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 69  W---KNLQYLTLDSNLLQGSLPDLPPH--MVQLLISNNSLTGEIPSSFCNLSSIQYLNLS 123
           +    N+  ++L    ++  L D+P H     L I    L         +L  ++ L L+
Sbjct: 281 FHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLT 336

Query: 124 NNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQT--NAKGCNLTSLRLSGNHLEGPLPPS 181
            N  S    + +   +L  LDL  N    S   +  +    +L  L LS N     +  +
Sbjct: 337 MNKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN 394

Query: 182 LINCVNLQFLDVGNNNLSGPIP-ECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILD 239
            +    LQ LD  ++ L          +  +L +LD+   +            ++L  L 
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454

Query: 240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVL 299
           M  N F  +   N+              N   L  LD+   Q++       D L +LQ+L
Sbjct: 455 MAGNSFKDNTLSNV------------FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 300 ILRSNRF 306
            +  N  
Sbjct: 503 NMSHNNL 509

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  111 bits (279), Expect = 3e-27
 Identities = 43/284 (15%), Positives = 82/284 (28%), Gaps = 35/284 (12%)

Query: 28  LDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLP 87
                 ++  ++P    DI   + + + LS N L  +    + N   L            
Sbjct: 16  YQCMDQKLS-KVPD---DIP-SSTKNIDLSFNPLKILKSYSFSNFSELQ----------- 59

Query: 88  DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST-LETLDLG 146
                   L +S   +      ++  L  +  L L+ N +    P      T LE L   
Sbjct: 60  -------WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 147 MNNFQGSIPQTNAKGCNLTSLRLSGNHLEG-PLPPSLINCVNLQFLDVGNNNLSGPIPEC 205
                        +   L  L ++ N +    LP    N  NL  +D+  N +       
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

Query: 206 LGNSTRLSF----LDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGP 261
           L            LD+  N +     +      L  L +R N  S ++ +   + L    
Sbjct: 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL---- 228

Query: 262 LPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
               L   + +         ++      ++ L  + +   R   
Sbjct: 229 --AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  108 bits (271), Expect = 3e-26
 Identities = 46/299 (15%), Positives = 95/299 (31%), Gaps = 31/299 (10%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW 69
             I    D      +L  L L  N     I        +  L    L         +L  
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ-NLAGLHVHRLILGEFKDERNLE- 248

Query: 70  KNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
                   + ++++G L D+   + +  ++  +   +    F  L+++  ++L+  S+  
Sbjct: 249 ------IFEPSIMEG-LCDV--TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK- 298

Query: 130 QIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQ 189
            +     +   ++L +     +   P  +     L SL L+ N     +    +   +L 
Sbjct: 299 YLEDVPKHFKWQSLSIIRCQLK-QFPTLDLP--FLKSLTLTMNKGS--ISFKKVALPSLS 353

Query: 190 FLDVGNNNLSGPIPECLGN--STRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSG 247
           +LD+  N LS        +  +  L  LD+  N         +    L+ LD + +    
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR 413

Query: 248 SLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
               +            + ++ + L  LD+        F      L  L  L +  N F
Sbjct: 414 VTEFS------------AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  107 bits (269), Expect = 7e-26
 Identities = 60/333 (18%), Positives = 108/333 (32%), Gaps = 45/333 (13%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---L 67
            +S+ PD + +    + +DLS N ++              LQ+L LS+  + +I+     
Sbjct: 22  KLSKVPDDIPSS--TKNIDLSFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWH 77

Query: 68  PWKNLQYLTLDSNLLQGSLPDLP---PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN 124
              +L  L L  N +Q   P        +  L+     L          L +++ LN+++
Sbjct: 78  GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137

Query: 125 NSLSG-QIPQCLGNST-LETLDLGMNNFQGSIPQT----NAKGCNLTSLRLSGNHLEGPL 178
           N +   ++P    N T L  +DL  N  Q                  SL +S N ++  +
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-I 196

Query: 179 PPSLINCVNLQFLDVGNNNLSGPIPE-CLGNSTRLSFLDVGNNSLSGPIP-ECLANSTLE 236
                  + L  L +  N  S  I + CL N   L    +           E    S +E
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 237 IL-DMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI----DDTFLYWLD 291
            L D+ +++F  +   +      F            +  + +    I    D    +   
Sbjct: 257 GLCDVTIDEFRLTYTND------FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ 310

Query: 292 VLL---------------QLQVLILRSNRFWGP 309
            L                 L+ L L  N+    
Sbjct: 311 SLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSIS 343

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  107 bits (269), Expect = 8e-26
 Identities = 51/323 (15%), Positives = 96/323 (29%), Gaps = 39/323 (12%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW---KNL 72
                  H L  L L+ N I+   P      G+ +L+ L+  +  L S++  P      L
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFS--GLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 73  QYLTLDSNLLQ-----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLS----SIQYLNLS 123
           + L +  N +          +L  ++V + +S N +     +    L         L++S
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNL-TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 124 NNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSL 182
            N +     Q      L  L L  N    +I +T  +    L   RL     +      +
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 183 INC--------VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST 234
                      V +    +   N              +S + +   S+   + +   +  
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LEDVPKHFK 308

Query: 235 LEILDMRMNKFSGSLPQNICKKL-------CFGPLPPSLVNCQYLEVLDVGNNQI----D 283
            + L +   +     P      L         G +    V    L  LD+  N +     
Sbjct: 309 WQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGC 367

Query: 284 DTFLYWLDVLLQLQVLILRSNRF 306
            ++         L+ L L  N  
Sbjct: 368 CSY--SDLGTNSLRHLDLSFNGA 388

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 34/195 (17%), Positives = 57/195 (29%), Gaps = 20/195 (10%)

Query: 129 GQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNL 188
           G +  C+      T           +P       +  ++ LS N L+     S  N   L
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSEL 58

Query: 189 QFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST-LEILDMRMNKFSG 247
           Q+LD+    +     +       LS L +  N +    P   +  T LE L     K + 
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 248 SLPQNICK------------KLCFGPLPPSLVNCQYLEVLDVGNNQI----DDTFLYWLD 291
                I +             +    LP    N   L  +D+  N I     +   +  +
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 292 VLLQLQVLILRSNRF 306
                  L +  N  
Sbjct: 179 NPQVNLSLDMSLNPI 193

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  131 bits (331), Expect = 4e-34
 Identities = 60/306 (19%), Positives = 111/306 (36%), Gaps = 32/306 (10%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHL---PWKNL 72
            +       L+ LDL+   +   +PS +   G+ TL+ L+LS N   ++  +    + +L
Sbjct: 271 SNTFHCFSGLQELDLTATHLS-ELPSGLV--GLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 73  QYLTLDSNLLQGSLPDLP----PHMVQLLISNNSLT--GEIPSSFCNLSSIQYLNLSNNS 126
            +L++  N  +  L         ++ +L +S++ +           NLS +Q LNLS N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 127 LSGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLIN 184
                 +       LE LDL     +    Q+  +    L  L LS + L+         
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 185 CVNLQFLDVGNNNLSGPIPEC---LGNSTRLSFLDVGNNSLSGPIPECLANST-LEILDM 240
              LQ L++  N+      +    L    RL  L +    LS        +   +  +D+
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 241 RMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLI 300
             N+ +                    ++      L++ +N I       L +L Q + + 
Sbjct: 508 SHNRLTS--------------SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTIN 553

Query: 301 LRSNRF 306
           LR N  
Sbjct: 554 LRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  131 bits (331), Expect = 4e-34
 Identities = 53/296 (17%), Positives = 96/296 (32%), Gaps = 23/296 (7%)

Query: 23  HQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDS 79
             L              P+    +   +++ + L ++   +I       +  LQ L L +
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287

Query: 80  NLLQGSLPDLPPHMVQLL---ISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL- 135
             L   LP     +  L    +S N        S  N  S+ +L++  N+   ++     
Sbjct: 288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 136 -GNSTLETLDLGMNNFQGSIPQTNAKGC--NLTSLRLSGNHLEGPLPPSLINCVNLQFLD 192
                L  LDL  ++ + S           +L SL LS N        +   C  L+ LD
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 193 VGNNNLSGPIPE-CLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLP 250
           +    L     +    N   L  L++ ++ L     +       L+ L+++ N F     
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 251 QNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
           Q             SL     LE+L +    +     +    L  +  + L  NR 
Sbjct: 467 Q----------KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  125 bits (315), Expect = 6e-32
 Identities = 60/302 (19%), Positives = 103/302 (34%), Gaps = 38/302 (12%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT------SI 64
           ++SE P  L     L+ L LS N+    +          +L  L +  N          +
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKFEN-LCQISAS-NFPSLTHLSIKGNTKRLELGTGCL 346

Query: 65  DHLPWKNLQYLTLDSNLLQGSLPDLP-----PHMVQLLISNNSLTGEIPSSFCNLSSIQY 119
           ++L   NL+ L L  + ++ S           H+  L +S N        +F     ++ 
Sbjct: 347 ENLE--NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 120 LNLSNNSLSGQIPQCL--GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG- 176
           L+L+   L  +  Q        L+ L+L  +    S  Q       L  L L GNH    
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 177 --PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST 234
                 SL     L+ L +   +LS        +   ++ +D+ +N L+    E L++  
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

Query: 235 LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID-----DTFLYW 289
              L++  N  S  LP               L        +++  N +D       FL W
Sbjct: 525 GIYLNLASNHISIILPS-------------LLPILSQQRTINLRQNPLDCTCSNIYFLEW 571

Query: 290 LD 291
             
Sbjct: 572 YK 573

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  123 bits (310), Expect = 2e-31
 Identities = 70/326 (21%), Positives = 117/326 (35%), Gaps = 33/326 (10%)

Query: 10  CNISEF-PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP 68
           C I     D  ++QH+L+ L L+ N +     + +   G   L+ L   Q  ++SID +P
Sbjct: 67  CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS--GPKALKHLFFIQTGISSIDFIP 124

Query: 69  W---KNLQYLTLDSNLLQGSLPDLP---PHMVQLLISNNSLTGEIPSSFCNLSSIQ--YL 120
               K L+ L L SN +             +  L   NN++         +L       L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 121 NLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQ--TNAKGCNLTSLRLSGNHLEGPL 178
           NL+ N ++G  P    ++  ++L+ G       I +   N+   +L          E   
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 179 PPSLINC--VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STL 235
           P        ++++ +++  +             + L  LD+    LS  +P  L   STL
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTL 303

Query: 236 EILDMRMNKFSGSLPQNICKKL-------------CFGPLPPSLVNCQYLEVLDVGNNQI 282
           + L +  NKF   L Q                           L N + L  LD+ ++ I
Sbjct: 304 KKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

Query: 283 D--DTFLYWLDVLLQLQVLILRSNRF 306
           +  D     L  L  LQ L L  N  
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEP 388

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  121 bits (305), Expect = 1e-30
 Identities = 49/309 (15%), Positives = 92/309 (29%), Gaps = 31/309 (10%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW---KNL 72
                    L +LDL++ QI             H L  L+L+ N L  +        K L
Sbjct: 50  NTTFSRLINLTFLDLTRCQIYWIHEDTFQ--SQHRLDTLVLTANPLIFMAETALSGPKAL 107

Query: 73  QYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
           ++L      +             +  L + +N ++            ++ L+  NN++  
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

Query: 130 QIPQC---LGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINC- 185
              +    L  +T  +L+L  N+    I           SL   G      +   L N  
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 186 -VNLQFLDVGNNNLSGPIPECLGNSTRLS--FLDVGNNSLSGPIPECLAN-STLEILDMR 241
             +L      + +     P        +S   +++  +             S L+ LD+ 
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 242 MNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLIL 301
               S               LP  LV    L+ L +  N+ ++           L  L +
Sbjct: 287 ATHLSE--------------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 302 RSNRFWGPI 310
           + N     +
Sbjct: 333 KGNTKRLEL 341

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  117 bits (296), Expect = 2e-29
 Identities = 58/305 (19%), Positives = 90/305 (29%), Gaps = 28/305 (9%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWK 70
              L  Q  LE L L  N I        +      L+ L    N +  +       L   
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGF--PTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179

Query: 71  NLQYLTLDSNLLQGSLPDL--PPHMVQLLISNNSLTGEIPS--SFCNLSSIQYLNLSNNS 126
               L L+ N + G  P          L          I        + S+      +  
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 127 LSGQIPQC---LGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI 183
                P     L   ++E+++L  + F      T      L  L L+  HL   LP  L+
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLV 298

Query: 184 NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI-PECLAN-STLEILDMR 241
               L+ L +  N           N   L+ L +  N+    +   CL N   L  LD+ 
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 242 MNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLIL 301
            +    S                 L N  +L+ L++  N+             QL++L L
Sbjct: 359 HDDIETS-----------DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407

Query: 302 RSNRF 306
              R 
Sbjct: 408 AFTRL 412

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (282), Expect = 1e-27
 Identities = 49/293 (16%), Positives = 89/293 (30%), Gaps = 33/293 (11%)

Query: 28  LDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSID-----HLPWKNLQYLTLDSNLL 82
            +     +   IP     +  ++ + L  S NVL +I       L   NL +L L    +
Sbjct: 17  YNCENLGLN-EIPG---TLP-NSTECLEFSFNVLPTIQNTTFSRLI--NLTFLDLTRCQI 69

Query: 83  QGSLPDLPPHMVQLLI---SNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST 139
                D      +L     + N L     ++     ++++L      +S      L N  
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 140 -LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQ--FLDVGNN 196
            LE+L LG N+              L  L    N +       + +        L++  N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 197 NLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST---LEILDMRMNKFSGSLPQNI 253
           +++G I     +S     L+ G       I + L NST   L +                
Sbjct: 190 DIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED------ 242

Query: 254 CKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
                  P     +    +E +++  +   +           LQ L L +   
Sbjct: 243 -----ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (300), Expect = 6e-30
 Identities = 71/308 (23%), Positives = 110/308 (35%), Gaps = 47/308 (15%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW 69
            N++  P +     +L  L++S NQ+   +P          L  L +  N LT +  LP 
Sbjct: 71  NNLTSLPALPP---ELRTLEVSGNQLT-SLPVLPPG-----LLELSIFSNPLTHLPALP- 120

Query: 70  KNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
             L  L +  N L  SLP LPP + +L +S+N L   +P+    L     L   NN L+ 
Sbjct: 121 SGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLA-SLPALPSEL---CKLWAYNNQLT- 174

Query: 130 QIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQ 189
            +P       L+ L +  N    S+P        L  L    N L   LP        L+
Sbjct: 175 SLPMLPSG--LQELSVSDNQLA-SLPTLP---SELYKLWAYNNRLT-SLPALPSG---LK 224

Query: 190 FLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSL 249
            L V  N L+  +P        L  L V  N L+  +P   +   L  L +  N+ +   
Sbjct: 225 ELIVSGNRLTS-LPVLPSE---LKELMVSGNRLTS-LPMLPSG--LLSLSVYRNQLTR-- 275

Query: 250 PQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP 309
                       LP SL++      +++  N + +  L  L  +           RF   
Sbjct: 276 ------------LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMA 323

Query: 310 IGKLRSRW 317
                   
Sbjct: 324 GASAPRET 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (262), Expect = 5e-25
 Identities = 58/231 (25%), Positives = 88/231 (38%), Gaps = 23/231 (9%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWK 70
            ++  P +      L+ L +S NQ+   +P+         L  L    N LTS+  LP  
Sbjct: 132 QLTSLPVLPP---GLQELSVSDNQLA-SLPA-----LPSELCKLWAYNNQLTSLPMLP-S 181

Query: 71  NLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQ 130
            LQ L++  N L  SLP LP  + +L   NN LT  +P+    L   + L +S N L+  
Sbjct: 182 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLT-SLPALPSGL---KELIVSGNRLT-S 235

Query: 131 IPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQF 190
           +P       L+ L +  N    S+P        L SL +  N L   LP SLI+  +   
Sbjct: 236 LPVLPSE--LKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLTR-LPESLIHLSSETT 288

Query: 191 LDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMR 241
           +++  N LS    + L   T                      +    L   
Sbjct: 289 VNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.8 bits (207), Expect = 7e-18
 Identities = 48/203 (23%), Positives = 73/203 (35%), Gaps = 34/203 (16%)

Query: 112 CNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSG 171
           C  +    LN+  + L+  +P CL    + TL +  NN   S+P        L +L +SG
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLPAH-ITTLVIPDNNLT-SLPAL---PPELRTLEVSG 90

Query: 172 NHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA 231
           N L   LP      + L        +L    P        L  L +  N L+  +P    
Sbjct: 91  NQLTS-LPVLPPGLLELSIFSNPLTHL----PALPSG---LCKLWIFGNQLTS-LPVLPP 141

Query: 232 NSTLEILDMRMNKFSGSLPQNICK-------KLCFGPLPPSLVNCQYLEVLDVGNNQIDD 284
              L+ L +  N+ + SLP    +             LP        L+ L V +NQ+  
Sbjct: 142 G--LQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSG---LQELSVSDNQLAS 195

Query: 285 TFLYWLDVLL-QLQVLILRSNRF 306
                L  L  +L  L   +NR 
Sbjct: 196 -----LPTLPSELYKLWAYNNRL 213

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.1 bits (187), Expect = 3e-15
 Identities = 46/189 (24%), Positives = 71/189 (37%), Gaps = 15/189 (7%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW 69
             ++  P +     +L  L    N++   +P+         L+ LI+S N LTS+  LP 
Sbjct: 191 NQLASLPTLP---SELYKLWAYNNRLT-SLPALP-----SGLKELIVSGNRLTSLPVLP- 240

Query: 70  KNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
             L+ L +  N L  SLP LP  ++ L +  N LT  +P S  +LSS   +NL  N LS 
Sbjct: 241 SELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

Query: 130 QIPQCLGNSTLETLDLG-MNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNL 188
           +  Q L   T      G +  F  +      +   L       + L              
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA--DWLVPAREGEPAPADRW 356

Query: 189 QFLDVGNNN 197
                 +N 
Sbjct: 357 HMFGQEDNA 365

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (284), Expect = 5e-29
 Identities = 55/295 (18%), Positives = 104/295 (35%), Gaps = 46/295 (15%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP-- 68
           N           +  +    +   ++      + D        L L    L      P  
Sbjct: 44  NRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQ---FPDQ 99

Query: 69  ---WKNLQYLTLDSNLLQGSLPDLPPHMVQ------LLISNNSLTGEIPSSFCNLSSIQY 119
                +LQ++T+D+      L +LP  M Q      L ++ N L   +P+S  +L+ ++ 
Sbjct: 100 AFRLSHLQHMTIDAA----GLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154

Query: 120 LNLSNNSLSGQIPQCLGNST----------LETLDLGMNNFQGSIPQTNAKGCNLTSLRL 169
           L++       ++P+ L ++           L++L L     + S+P + A   NL SL++
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213

Query: 170 SGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPEC 229
             + L   L P++ +   L+ LD+         P   G    L  L + + S    +P  
Sbjct: 214 RNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272

Query: 230 LAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID 283
           +   + LE LD+R       LP  I                    ++ V  +   
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIA-------------QLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 8e-23
 Identities = 49/265 (18%), Positives = 90/265 (33%), Gaps = 35/265 (13%)

Query: 11  NISEFPDILR--TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT----SI 64
            +    D+L   TQ     L+L    +  + P   + +    LQ + +    L     ++
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRL--SHLQHMTIDAAGLMELPDTM 123

Query: 65  DHLPWKNLQYLTLDSNLLQ------GSLPDLPPHMVQLLISNNSLTGEIPSSFCN----- 113
                  L+ LTL  N L+       SL  L     +L I       E+P    +     
Sbjct: 124 QQF--AGLETLTLARNPLRALPASIASLNRL----RELSIRACPELTELPEPLASTDASG 177

Query: 114 ----LSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLR 168
               L ++Q L L    +   +P  + N   L++L +  +    ++         L  L 
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

Query: 169 LSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE 228
           L G       PP       L+ L + + +    +P  +   T+L  LD+        +P 
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 229 CLAN-STLEILDMRMNKFSGSLPQN 252
            +A      I+ +  +     L Q+
Sbjct: 296 LIAQLPANCIILVPPH-LQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.6 bits (210), Expect = 1e-18
 Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 33/248 (13%)

Query: 70  KNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
              + L    +       D+     +   ++ +          N ++ Q    +  +L  
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTGRALK- 69

Query: 130 QIPQCLGNST---LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCV 186
                L ++T      L+L         P    +  +L  + +    L   LP ++    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFA 127

Query: 187 NLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST----------LE 236
            L+ L +  N L   +P  + +  RL  L +        +PE LA++           L+
Sbjct: 128 GLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 237 ILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQL 296
            L +                     LP S+ N Q L+ L + N+ +       +  L +L
Sbjct: 187 SLRLEWTGIRS--------------LPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKL 231

Query: 297 QVLILRSN 304
           + L LR  
Sbjct: 232 EELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.6 bits (197), Expect = 5e-17
 Identities = 31/214 (14%), Positives = 63/214 (29%), Gaps = 17/214 (7%)

Query: 96  LLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIP 155
           L    ++                  + +    + +      NS    ++        +  
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRALKATA 72

Query: 156 QT--NAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLS 213
               +A      +L L    L    P       +LQ + +    L   +P+ +     L 
Sbjct: 73  DLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLE 130

Query: 214 FLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYL 272
            L +  N L   +P  +A+ + L  L +R       LP+ +                  L
Sbjct: 131 TLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLAST----DASGEHQGLVNL 185

Query: 273 EVLDVGNNQIDDTFL-YWLDVLLQLQVLILRSNR 305
           + L +    I    L   +  L  L+ L +R++ 
Sbjct: 186 QSLRLEWTGI--RSLPASIANLQNLKSLKIRNSP 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (279), Expect = 1e-27
 Identities = 59/288 (20%), Positives = 116/288 (40%), Gaps = 32/288 (11%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSID-----HLPWK 70
           P        L  L L  N+++  IP  ++  G+  L  L +S+N +  +       L   
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLK-LIPLGVFT-GLSNLTKLDISENKIVILLDYMFQDLY-- 128

Query: 71  NLQYLTLDSNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126
           NL+ L +  N L      +   L   + QL +   +LT     +  +L  +  L L + +
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 127 LSGQIPQCL--GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLIN 184
           ++  I          L+ L++    +  ++      G NLTSL ++  +L      ++ +
Sbjct: 188 IN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 185 CVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMN 243
            V L+FL++  N +S      L    RL  + +    L+   P      + L +L++  N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 244 KFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID-DTFLYWL 290
           + + +L +++     F  +         LE L + +N +  D  L W+
Sbjct: 307 QLT-TLEESV-----FHSVGN-------LETLILDSNPLACDCRLLWV 341

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (268), Expect = 5e-26
 Identities = 61/295 (20%), Positives = 118/295 (40%), Gaps = 33/295 (11%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLDS 79
              LDL KN+I+  +    +      L+ L L++N+++++     ++L   NL+ L L S
Sbjct: 34  TRLLDLGKNRIK-TLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLF--NLRTLGLRS 89

Query: 80  NLLQGSLPDL----PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL 135
           N L+  +P        ++ +L IS N +   +   F +L +++ L + +N L   I    
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRA 147

Query: 136 --GNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLINCVNLQFLD 192
             G ++LE L L   N   SIP         L  LRL   ++      S      L+ L+
Sbjct: 148 FSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

Query: 193 VGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQ 251
           + +      +         L+ L + + +L+      + +   L  L++  N  S ++  
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEG 265

Query: 252 NICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
           ++        L         L+ + +   Q+     Y    L  L+VL +  N+ 
Sbjct: 266 SM-----LHELL-------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (268), Expect = 5e-26
 Identities = 67/306 (21%), Positives = 117/306 (38%), Gaps = 37/306 (12%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWK 70
            D   +   LE L+L++N +   +    ++  +  L+ L L  N L  I       L   
Sbjct: 49  QDEFASFPHLEELELNENIVS-AVEPGAFN-NLFNLRTLGLRSNRLKLIPLGVFTGLS-- 104

Query: 71  NLQYLTLDSNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPS-SFCNLSSIQYLNLSNN 125
           NL  L +  N +         DL  ++  L + +N L   I   +F  L+S++ L L   
Sbjct: 105 NLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKC 162

Query: 126 SLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLI 183
           +L+    + L +   L  L L   N   +I   + K    L  L +S       + P+ +
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 184 NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRM 242
             +NL  L + + NL+      + +   L FL++  N +S      L     L+ + +  
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

Query: 243 NKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYW--LDVLLQLQVLI 300
            + +  +               +     YL VL+V  NQ+  T L       +  L+ LI
Sbjct: 282 GQLA-VVEPY------------AFRGLNYLRVLNVSGNQL--TTLEESVFHSVGNLETLI 326

Query: 301 LRSNRF 306
           L SN  
Sbjct: 327 LDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (250), Expect = 1e-23
 Identities = 55/268 (20%), Positives = 103/268 (38%), Gaps = 29/268 (10%)

Query: 50  TLQFLILSQNVLTSID-----HLPWKNLQYLTLDSNLL----QGSLPDLPPHMVQLLISN 100
             + L L +N + +++       P  +L+ L L+ N++     G+  +L  ++  L + +
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFP--HLEELELNENIVSAVEPGAFNNL-FNLRTLGLRS 89

Query: 101 NSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNA 159
           N L       F  LS++  L++S N +   +         L++L++G N+    I     
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAF 148

Query: 160 KGC-NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDV- 217
            G  +L  L L   +L      +L +   L  L + + N++           RL  L++ 
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 218 GNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDV 277
               L    P CL    L  L +     + ++P    + L             YL  L++
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHL------------VYLRFLNL 255

Query: 278 GNNQIDDTFLYWLDVLLQLQVLILRSNR 305
             N I       L  LL+LQ + L   +
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQ 283

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.0 bits (208), Expect = 4e-18
 Identities = 49/223 (21%), Positives = 80/223 (35%), Gaps = 17/223 (7%)

Query: 87  PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDL 145
             +P     L +  N +       F +   ++ L L+ N +S   P    N   L TL L
Sbjct: 28  EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 146 GMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPE 204
             N  +  IP     G  NLT L +S N +   L     +  NL+ L+VG+N+L      
Sbjct: 88  RSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 205 CLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLP 263
                  L  L +   +L+    E L++   L +L +R    + ++              
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIR------------D 193

Query: 264 PSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
            S      L+VL++ +    DT        L L  L +     
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  109 bits (274), Expect = 2e-27
 Identities = 68/286 (23%), Positives = 115/286 (40%), Gaps = 34/286 (11%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW-KNLQYLTLDSNLL 82
            LE+L+L+ NQI    P       +  L  L +  N +T I  L    NL+ L L+ + +
Sbjct: 67  NLEYLNLNGNQITDISPLS----NLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNI 122

Query: 83  QG--SLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST- 139
                L +L   M  L +  N       S   N++ + YL ++ + +    P  + N T 
Sbjct: 123 SDISPLANLT-KMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTD 178

Query: 140 LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLS 199
           L +L L  N  +   P  +    +L       N +       + N   L  L +GNN ++
Sbjct: 179 LYSLSLNYNQIEDISPLASLT--SLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKIT 234

Query: 200 GPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCF 259
              P  L N ++L++L++G N +S  I      + L++L++  N+ S             
Sbjct: 235 DLSP--LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISD------------ 279

Query: 260 GPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
                 L N   L  L + NNQ+ +  +  +  L  L  L L  N 
Sbjct: 280 ---ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (260), Expect = 2e-25
 Identities = 63/287 (21%), Positives = 120/287 (41%), Gaps = 38/287 (13%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHL-PWKNLQYLTLDSNLL 82
           +     L K  +   +        + ++  L+++   + SI  +    NL+YL L+ N +
Sbjct: 23  EGIRAVLQKASVTDVVT----QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI 78

Query: 83  QGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST- 139
              +  L     +  L I  N +T    S+  NL++++ L L+ +++S   P  L N T 
Sbjct: 79  T-DISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTK 133

Query: 140 LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLS 199
           + +L+LG N+   S     +    L  L ++ + ++      + N  +L  L +  N + 
Sbjct: 134 MYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIE 190

Query: 200 GPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLC 258
              P  L + T L +     N ++   P  +AN + L  L +  NK +            
Sbjct: 191 DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL---------- 236

Query: 259 FGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
                  L N   L  L++G NQI D  +  +  L +L++L + SN+
Sbjct: 237 -----SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQ 276

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  102 bits (256), Expect = 7e-25
 Identities = 58/286 (20%), Positives = 108/286 (37%), Gaps = 29/286 (10%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP- 68
             I++   +     +L  L +  N+I   I +      +  L+ L L+++ ++ I  L  
Sbjct: 76  NQITDISPLSNLV-KLTNLYIGTNKIT-DISALQ---NLTNLRELYLNEDNISDISPLAN 130

Query: 69  WKNLQYLTLDSNLLQGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126
              +  L L +N     L  L     +  L ++ + +    P    NL+ +  L+L+ N 
Sbjct: 131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188

Query: 127 LSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINC 185
           +    P  L + ++L      +N      P  N     L SL++  N +       L N 
Sbjct: 189 IEDISP--LASLTSLHYFTAYVNQITDITPVANMT--RLNSLKIGNNKITDL--SPLANL 242

Query: 186 VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKF 245
             L +L++G N +S      + + T+L  L+VG+N +S  I      S L  L +  N+ 
Sbjct: 243 SQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQL 299

Query: 246 SGSLPQNICK-------KLCFGPLP--PSLVNCQYLEVLDVGNNQI 282
                + I          L    +     L +   ++  D  N  I
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.5 bits (236), Expect = 4e-22
 Identities = 48/240 (20%), Positives = 90/240 (37%), Gaps = 18/240 (7%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW- 69
           NIS+    L    ++  L+L  N     +        +  L +L ++++ +  +  +   
Sbjct: 121 NISDISP-LANLTKMYSLNLGANHNLSDLSPLS---NMTGLNYLTVTESKVKDVTPIANL 176

Query: 70  KNLQYLTLDSNLLQG--SLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127
            +L  L+L+ N ++    L  L   +       N +T   P    N++ +  L + NN +
Sbjct: 177 TDLYSLSLNYNQIEDISPLASLT-SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233

Query: 128 SGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCV 186
           +   P  L N + L  L++G N         +     L  L +  N +       L N  
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQISDINAVKDLT--KLKMLNVGSNQISDI--SVLNNLS 287

Query: 187 NLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFS 246
            L  L + NN L     E +G  T L+ L +  N ++  I    + S ++  D       
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.9 bits (211), Expect = 9e-19
 Identities = 48/235 (20%), Positives = 82/235 (34%), Gaps = 27/235 (11%)

Query: 72  LQYLTLDSNLLQGSLPDLP-PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQ 130
              L      +    PD      ++ ++   S+T  +      L SI  L ++   ++  
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-S 58

Query: 131 IPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQF 190
           I      + LE L+L  N      P +N     LT+L +  N +      +L N  NL+ 
Sbjct: 59  IQGIEYLTNLEYLNLNGNQITDISPLSNLV--KLTNLYIGTNKITD--ISALQNLTNLRE 114

Query: 191 LDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLP 250
           L +  +N+S   P  L N T++  L++G N     +      + L  L +  +K      
Sbjct: 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-- 170

Query: 251 QNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
                          + N   L  L +  NQI    +  L  L  L       N+
Sbjct: 171 -------------TPIANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQ 210

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  108 bits (272), Expect = 2e-27
 Identities = 67/292 (22%), Positives = 110/292 (37%), Gaps = 26/292 (8%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLDS 79
              LDL  N+I   I    +   +  L  LIL  N ++ I       L    L+ L L  
Sbjct: 54  TALLDLQNNKIT-EIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLV--KLERLYLSK 109

Query: 80  NLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL-SGQIPQCL--G 136
           N L+     +P  + +L +  N +T    S F  L+ +  + L  N L S  I      G
Sbjct: 110 NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 137 NSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNN 196
              L  + +   N   +IPQ      +LT L L GN +      SL    NL  L +  N
Sbjct: 170 MKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 197 NLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST-LEILDMRMNKFSGSLPQNICK 255
           ++S      L N+  L  L + NN L   +P  LA+   ++++ +  N  S ++  N   
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS-AIGSND-- 282

Query: 256 KLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL--YWLDVLLQLQVLILRSNR 305
              F P P           + + +N +    +       +     + L + +
Sbjct: 283 ---FCP-PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.4 bits (204), Expect = 6e-18
 Identities = 54/265 (20%), Positives = 106/265 (40%), Gaps = 31/265 (11%)

Query: 51  LQFLILSQNVLTSI-DHLPWKNLQYLTLDSNLLQ----GSLPDLPPHMVQLLISNNSLTG 105
           L+ +  S   L  +   LP  +   L L +N +     G   +L  ++  L++ NN ++ 
Sbjct: 33  LRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISK 90

Query: 106 EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC-NL 164
             P +F  L  ++ L LS N L  ++P+ +  + L+ L +  N     + ++   G   +
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT-LQELRVHENEIT-KVRKSVFNGLNQM 147

Query: 165 TSLRLSGNHL-EGPLPP-SLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSL 222
             + L  N L    +   +      L ++ + + N++  IP+  G    L+ L +  N +
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNKI 204

Query: 223 SGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ 281
           +      L   + L  L +  N  S ++               SL N  +L  L + NN+
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSIS-AVDNG------------SLANTPHLRELHLNNNK 251

Query: 282 IDDTFLYWLDVLLQLQVLILRSNRF 306
           +       L     +QV+ L +N  
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNI 275

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  110 bits (275), Expect = 8e-27
 Identities = 48/305 (15%), Positives = 99/305 (32%), Gaps = 54/305 (17%)

Query: 13  SEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNL 72
           +++        +      ++N+    +   + +        L L++  L+S+       +
Sbjct: 27  ADYFSAWDKWEKQALPGENRNEAVSLLKECLIN----QFSELQLNRLNLSSLPDNLPPQI 82

Query: 73  QYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP 132
             L +  N L  SLP+LP  +  L   +N L+  +P    +L   ++L++ NN L+  +P
Sbjct: 83  TVLEITQNALI-SLPELPASLEYLDACDNRLS-TLPELPASL---KHLDVDNNQLT-MLP 136

Query: 133 QCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLD 192
           +      LE ++   N     +P       +L  L +  N L   LP       +L+ LD
Sbjct: 137 ELPAL--LEYINADNNQLT-MLP---ELPTSLEVLSVRNNQLTF-LPELP---ESLEALD 186

Query: 193 VGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQN 252
           V  N L   +P     +                        T      R N+ +      
Sbjct: 187 VSTNLLES-LPAVPVRNHHSE-------------------ETEIFFRCRENRITH----- 221

Query: 253 ICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGK 312
                    +P ++++      + + +N +       L               F    G+
Sbjct: 222 ---------IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

Query: 313 LRSRW 317
             +  
Sbjct: 273 QNTLH 277

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.9 bits (202), Expect = 2e-17
 Identities = 54/234 (23%), Positives = 85/234 (36%), Gaps = 32/234 (13%)

Query: 86  LPDLPPHMVQLLISNNSLTG---EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLET 142
           LP      +      N+++G   +  S++           + N     + +CL N     
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ-FSE 63

Query: 143 LDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPI 202
           L L   N   S+P        +T L ++ N L   LP       +L++LD  +N LS  +
Sbjct: 64  LQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELP---ASLEYLDACDNRLST-L 115

Query: 203 PECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICK------- 255
           PE   +   L  LDV NN L+  +PE  A   LE ++   N+ +  LP+           
Sbjct: 116 PELPAS---LKHLDVDNNQLTM-LPELPAL--LEYINADNNQLT-MLPELPTSLEVLSVR 168

Query: 256 KLCFGPLPPSLVNCQYLEVLDVGNNQID---DTFLYWLDVLLQLQVLILRSNRF 306
                 LP    +   LE LDV  N ++      +              R NR 
Sbjct: 169 NNQLTFLPELPES---LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI 219

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 5e-15
 Identities = 37/231 (16%), Positives = 79/231 (34%), Gaps = 19/231 (8%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWK 70
            ++  P++      LE+++   NQ+   +P         +L+ L +  N LT +  LP +
Sbjct: 131 QLTMLPELPA---LLEYINADNNQLT-MLPELP-----TSLEVLSVRNNQLTFLPELP-E 180

Query: 71  NLQYLTLDSNLLQ------GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN 124
           +L+ L + +NLL+                +      N +T  IP +  +L     + L +
Sbjct: 181 SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239

Query: 125 NSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLIN 184
           N LS +I + L   T +    G      S+        +                  +  
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHG-PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298

Query: 185 CVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTL 235
             +    +   N  S    + L ++            ++  + +  A++ L
Sbjct: 299 IWHAFEHEEHANTFSA-FLDRLSDTVSARNTSGFREQVAAWLEKLSASAEL 348

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  107 bits (268), Expect = 1e-26
 Identities = 59/291 (20%), Positives = 103/291 (35%), Gaps = 25/291 (8%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLDS 79
              LDL  N I   +    +  G+  L  L+L  N ++ I       L    LQ L +  
Sbjct: 56  TTLLDLQNNDIS-ELRKDDFK-GLQHLYALVLVNNKISKIHEKAFSPLR--KLQKLYISK 111

Query: 80  NLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQI--PQCLGN 137
           N L    P+LP  +V+L I +N +       F  L ++  + +  N L      P     
Sbjct: 112 NHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 138 STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN 197
             L  L +        IP+   +   L  L L  N ++      L+    L  L +G+N 
Sbjct: 172 LKLNYLRISEAKLT-GIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 198 LSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST-LEILDMRMNKFSGSLPQNICKK 256
           +       L     L  L + NN LS  +P  L +   L+++ +  N  +  +  N    
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT-KVGVND--- 283

Query: 257 LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL--YWLDVLLQLQVLILRSNR 305
             F P+   +    Y   + + NN +    +       +     +   + +
Sbjct: 284 --FCPVGFGV-KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 60/264 (22%), Positives = 103/264 (39%), Gaps = 30/264 (11%)

Query: 51  LQFLILSQNVLTSI-DHLPWKNLQYLTLDSNLLQ----GSLPDLPPHMVQLLISNNSLTG 105
           L+ +  S   L ++   +   +   L L +N +          L  H+  L++ NN ++ 
Sbjct: 35  LRVVQCSDLGLKAVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISK 92

Query: 106 EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC-NL 164
               +F  L  +Q L +S N L  +IP  L  S+L  L +  N  +  +P+    G  N+
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLV-EIPPNL-PSSLVELRIHDNRIR-KVPKGVFSGLRNM 149

Query: 165 TSLRLSGNHL-EGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS 223
             + + GN L      P   + + L +L +    L+G IP+       L+ L + +N + 
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK--DLPETLNELHLDHNKIQ 206

Query: 224 GPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI 282
               E L   S L  L +  N+    +               SL     L  L + NN++
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIR-MIENG------------SLSFLPTLRELHLDNNKL 253

Query: 283 DDTFLYWLDVLLQLQVLILRSNRF 306
                  L  L  LQV+ L +N  
Sbjct: 254 S-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 4e-17
 Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 21/202 (10%)

Query: 11  NISEFP-DILRTQHQLEWLDLSKNQIR-GRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP 68
            I + P  +      +  +++  N +         +D G+  L +L +S+  LT I    
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD-GL-KLNYLRISEAKLTGIPKDL 191

Query: 69  WKNLQYLTLDSNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN 124
            + L  L LD N +Q      L      + +L + +N +      S   L +++ L+L N
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 125 NSLSGQIPQCLGNST-LETLDLGMNNFQGSIP-------QTNAKGCNLTSLRLSGNHLE- 175
           N LS ++P  L +   L+ + L  NN    +            K      + L  N +  
Sbjct: 251 NKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 176 GPLPPSLINCV-NLQFLDVGNN 196
             + P+   CV +   +  GN 
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.3 bits (196), Expect = 6e-17
 Identities = 48/238 (20%), Positives = 89/238 (37%), Gaps = 22/238 (9%)

Query: 71  NLQYLTLDSNLLQGSLP-DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
           +L+ +      L+ ++P ++ P    L + NN ++      F  L  +  L L NN +S 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 130 QIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNL 188
              +       L+ L +  N+    IP       +L  LR+  N +            N+
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLV-EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 189 QFLDVGNNNL-SGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSG 247
             +++G N L +        +  +L++L +    L+G   +      L  L +  NK   
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET--LNELHLDHNKIQ- 206

Query: 248 SLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
           ++                L+    L  L +G+NQI       L  L  L+ L L +N+
Sbjct: 207 AIELE------------DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 20/145 (13%)

Query: 162 CNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNS 221
           C+L  ++ S   L+  +P  +    +   LD+ NN++S    +       L  L + NN 
Sbjct: 33  CHLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 222 LSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNN 280
           +S    +  +    L+ L +  N     +P N         LP S      L  L + +N
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPN---------LPSS------LVELRIHDN 133

Query: 281 QIDDTFLYWLDVLLQLQVLILRSNR 305
           +I          L  +  + +  N 
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNP 158

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (265), Expect = 2e-26
 Identities = 62/295 (21%), Positives = 115/295 (38%), Gaps = 25/295 (8%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHL-PWKNLQY 74
             + ++   ++ LDLS N +     + +       L+ L LS NVL     L     L+ 
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETLDLESLSTLRT 84

Query: 75  LTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQC 134
           L L++N +Q  L    P +  L  +NN+++  +  S       + + L+NN ++      
Sbjct: 85  LDLNNNYVQ-ELLVG-PSIETLHAANNNIS-RVSCS--RGQGKKNIYLANNKITMLRDLD 139

Query: 135 LGN-STLETLDLGMNNFQG-SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLD 192
            G  S ++ LDL +N     +  +  A    L  L L  N +   +    +    L+ LD
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLD 197

Query: 193 VGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQ 251
           + +N L+  +     ++  ++++ + NN L   I + L     LE  D+R N F     +
Sbjct: 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 252 NICKKLC---------FGPLP-PSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQL 296
           +   K              L   +   C    +   G    +D    + D L+ L
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (259), Expect = 2e-25
 Identities = 50/300 (16%), Positives = 109/300 (36%), Gaps = 39/300 (13%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSID-----HLPWK 70
            +I +  ++ +   ++ + ++  + S         ++ L LS N L+ I           
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLSQISAADLAPFT-- 58

Query: 71  NLQYLTLDSNLLQGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 128
            L+ L L SN+L     DL     +  L ++NN +            SI+ L+ +NN++S
Sbjct: 59  KLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 129 GQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG-PLPPSLINCVN 187
            ++    G    + + L  N               +  L L  N ++         +   
Sbjct: 113 -RVSCSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 188 LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFS 246
           L+ L++  N +   +   +    +L  LD+ +N L+  +     + + +  + +R NK  
Sbjct: 171 LEHLNLQYNFIYD-VKGQVVF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227

Query: 247 GSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID-DTFLYWLDVLLQLQVLILRSNR 305
                          +  +L   Q LE  D+  N     T   +     ++Q +  ++ +
Sbjct: 228 L--------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.1 bits (206), Expect = 3e-18
 Identities = 45/254 (17%), Positives = 95/254 (37%), Gaps = 37/254 (14%)

Query: 85  SLPDLPPHM---VQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST-L 140
           ++ ++  +        ++++SL   + S   +  +++ L+LS N LS      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 141 ETLDLGMNNFQGSIPQTN-----------------AKGCNLTSLRLSGNHLEGPLPPSLI 183
           E L+L  N    ++   +                   G ++ +L  + N++   +  S  
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR-VSCSRG 119

Query: 184 NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSG-PIPECLANST-LEILDMR 241
                + + + NN ++       G  +R+ +LD+  N +      E  A+S  LE L+++
Sbjct: 120 Q--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 242 MNKFSGSLPQNIC----KKLCFG-----PLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDV 292
            N     +   +     K L         + P   +   +  + + NN++       L  
Sbjct: 178 YNFIY-DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRF 235

Query: 293 LLQLQVLILRSNRF 306
              L+   LR N F
Sbjct: 236 SQNLEHFDLRGNGF 249

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  109 bits (273), Expect = 2e-26
 Identities = 62/299 (20%), Positives = 108/299 (36%), Gaps = 29/299 (9%)

Query: 19  LRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW---KNLQYL 75
           L   H +       + I+    +    +   +++ L LS   + S++   +   K+L+ L
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295

Query: 76  TLDSNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQI 131
            L  N +      +   L  ++  L +S N L     S+F  L  + Y++L  N ++   
Sbjct: 296 NLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 132 PQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQF 190
            Q       L+TLDL  N    +I        ++  + LSGN L      +L        
Sbjct: 355 DQTFKFLEKLQTLDLRDNALT-TIHFIP----SIPDIFLSGNKLVTLPKINL----TANL 405

Query: 191 LDVGNNNLSG-PIPECLGNSTRLSFLDVGNNSLSGPIPECLA--NSTLEILDMRMNKFSG 247
           + +  N L    I   L     L  L +  N  S    +     N +LE L +  N    
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 248 SLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
           +    +C                +L+VL + +N ++         L  L+ L L SNR 
Sbjct: 466 AWETELC--------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (257), Expect = 3e-24
 Identities = 72/331 (21%), Positives = 118/331 (35%), Gaps = 52/331 (15%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--- 66
           CN+++ P +L T    E L LS N IR  + +  +   +  LQ L L             
Sbjct: 14  CNLTQVPQVLNT---TERLLLSFNYIR-TVTASSFP-FLEQLQLLELGSQYTPLTIDKEA 68

Query: 67  -LPWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEI--PSSFCNLSSIQYL 120
                NL+ L L S+ +    PD      H+ +L +    L+  +     F NL ++  L
Sbjct: 69  FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 121 NLSNNSLSG-QIPQCLGNST-LETLDLGMNNFQGSIPQT--NAKGCNLTSLRLSGNHLEG 176
           +LS N +    +    G    L+++D   N             +G  L+   L+ N L  
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188

Query: 177 PLPPSLINCVN------LQFLDVGNNNLSGPIPECLGN------------STRLSFLDVG 218
            +      C+N      L+ LDV  N  +  I     N            +  +     G
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248

Query: 219 NNSLSGPIP---ECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVL 275
            +++  P       LA S++  LD+       SL   +                + L+VL
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRV------------FETLKDLKVL 295

Query: 276 DVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
           ++  N+I+         L  LQVL L  N  
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  101 bits (253), Expect = 1e-23
 Identities = 58/334 (17%), Positives = 110/334 (32%), Gaps = 54/334 (16%)

Query: 10  CNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSID--- 65
             I            QL+ L+L        I    +   +  L+ L L  + +  +    
Sbjct: 34  NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR-NLPNLRILDLGSSKIYFLHPDA 92

Query: 66  --HLPWKNLQYLTLDSNLLQ------GSLPDLPPHMVQLLISNNSLTG-EIPSSFCNLSS 116
              L   +L  L L    L       G   +L   + +L +S N +    +  SF  L+S
Sbjct: 93  FQGLF--HLFELRLYFCGLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPSFGKLNS 149

Query: 117 IQYLNLSNN---SLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCN------LTSL 167
           ++ ++ S+N    +     + L   TL    L  N+    +     K  N      L  L
Sbjct: 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209

Query: 168 RLSGNHLEGPLPPSLINCV------------NLQFLDVGNNNLSGPIPECLGNSTRLS-- 213
            +SGN     +  +  N +            ++     G +N+  P         R S  
Sbjct: 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269

Query: 214 FLDVGNNSLSGPIPECLANST-LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYL 272
            LD+ +  +             L++L++  NK +  +         F  L         L
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEA-----FYGLD-------NL 316

Query: 273 EVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
           +VL++  N + + +      L ++  + L+ N  
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  100 bits (251), Expect = 2e-23
 Identities = 68/313 (21%), Positives = 114/313 (36%), Gaps = 50/313 (15%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSN 80
            +  LDLS   +   + S +++  +  L+ L L+ N +  I         NLQ L L  N
Sbjct: 267 SVRHLDLSHGFVF-SLNSRVFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 81  LLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG 136
           LL      +   LP  +  + +  N +      +F  L  +Q L+L +N+L+        
Sbjct: 325 LLGELYSSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT----TIHF 379

Query: 137 NSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG-PLPPSLINCVNLQFLDVGN 195
             ++  + L  N    ++P+ N        + LS N LE   +   L+   +LQ L +  
Sbjct: 380 IPSIPDIFLSGNKLV-TLPKIN---LTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435

Query: 196 NNLSGPIPECL-GNSTRLSFLDVGNNSLSGPIPECLANST------LEILDMRMNKFSGS 248
           N  S    +     +  L  L +G N L       L          L++L +  N  + S
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-S 494

Query: 249 LPQNICKKLCFGPLP---------------PSLVNCQYLEVLDVGNNQIDDTFLYWLDVL 293
           LP  +     F  L                        LE+LD+  NQ+           
Sbjct: 495 LPPGV-----FSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDV---F 546

Query: 294 LQLQVLILRSNRF 306
           + L VL +  N+F
Sbjct: 547 VSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  100 bits (250), Expect = 2e-23
 Identities = 56/252 (22%), Positives = 93/252 (36%), Gaps = 30/252 (11%)

Query: 10  CNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP 68
             + E          ++ ++DL KN I   I    +   +  LQ L L  N LT+I  +P
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFK-FLEKLQTLDLRDNALTTIHFIP 381

Query: 69  WKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTG-EIPSSFCNLSSIQYLNLSNNSL 127
             ++  + L  N L  +LP +      + +S N L   +I      +  +Q L L+ N  
Sbjct: 382 --SIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438

Query: 128 SGQIPQCL--GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINC 185
           S          N +LE L LG N  Q +                                
Sbjct: 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD-------------------VFEGL 479

Query: 186 VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKF 245
            +LQ L + +N L+   P    + T L  L + +N L+  +      + LEILD+  N+ 
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLPANLEILDISRNQL 538

Query: 246 SGSLPQNICKKL 257
             +   ++   L
Sbjct: 539 L-APNPDVFVSL 549

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 98.3 bits (245), Expect = 1e-22
 Identities = 64/325 (19%), Positives = 116/325 (35%), Gaps = 34/325 (10%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWK 70
               R    L  LDLSKNQIR       +   +++L+ +  S N +  +     + L  K
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFG-KLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

Query: 71  NLQYLTLDSNLLQGSLPDLPPHMVQLL---------ISNNSLTGEIPSSFCN-------- 113
            L + +L +N L   +       +            +S N  T +I  +F N        
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 114 ----LSSIQYLNLSNNSLSGQIP---QCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTS 166
                  I       +++          L  S++  LDL          +      +L  
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 167 LRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI 226
           L L+ N +      +     NLQ L++  N L            +++++D+  N ++   
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 227 PECLAN-STLEILDMRMNKFS--GSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID 283
            +       L+ LD+R N  +    +P      L    L           ++ +  N+++
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 284 D-TFLYWLDVLLQLQVLILRSNRFW 307
           +   LY+L  +  LQ+LIL  NRF 
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFS 439

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 92.6 bits (230), Expect = 8e-21
 Identities = 47/322 (14%), Positives = 101/322 (31%), Gaps = 49/322 (15%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP----WKN 71
           PD  +    L  L L    +   +    +   +  L  L LS+N + S+   P      +
Sbjct: 90  PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149

Query: 72  LQYLTLDSNLLQ----GSLPDL-PPHMVQLLISNNSLTGEIPSSFCNLS------SIQYL 120
           L+ +   SN +       L  L    +    ++ NSL   +   +           ++ L
Sbjct: 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209

Query: 121 NLSNNSLSGQIPQCLGNS-------------TLETLDLGMNNFQGSIPQT--NAKGCNLT 165
           ++S N  +  I     N+              +     G +N +     T       ++ 
Sbjct: 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269

Query: 166 SLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP 225
            L LS   +            +L+ L++  N ++    E       L  L++  N L   
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329

Query: 226 IPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD 284
                     +  +D++ N  +  +               +    + L+ LD+ +N +  
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIA-IIQDQ------------TFKFLEKLQTLDLRDNALTT 376

Query: 285 TFLYWLDVLLQLQVLILRSNRF 306
                +  +  +  + L  N+ 
Sbjct: 377 -----IHFIPSIPDIFLSGNKL 393

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  107 bits (269), Expect = 3e-26
 Identities = 53/312 (16%), Positives = 98/312 (31%), Gaps = 41/312 (13%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDI--------------------GVHTLQFLI 55
             + ++   ++ LDLS N +     + +                        + TL+ L 
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLD 86

Query: 56  LSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLS 115
           L+ N +  +   P  +++ L   +N +             + ++NN +T          S
Sbjct: 87  LNNNYVQELLVGP--SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRS 144

Query: 116 SIQYLNLSNNSLSG-QIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNH 173
            +QYL+L  N +      +   +S  LE L+L  N       Q       L +L LS N 
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA--KLKTLDLSSNK 202

Query: 174 LEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANS 233
           L   + P   +   + ++ + NN L   I + L  S  L   D+  N           + 
Sbjct: 203 LAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 234 TLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVL 293
              +  +          QN                C    +   G    +D    + D L
Sbjct: 261 NQRVQTVAKQTVKKLTGQN-------------EEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 294 LQLQVLILRSNR 305
           + L+        
Sbjct: 308 IALKRKEHALLS 319

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.8 bits (246), Expect = 4e-23
 Identities = 51/299 (17%), Positives = 111/299 (37%), Gaps = 35/299 (11%)

Query: 15  FPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKN 71
             +I +  ++ +   ++ + ++  + S         ++ L LS N L+ I      P+  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 72  LQYLTLDSNLLQGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
           L+ L L SN+L     DL     +  L ++NN +            SI+ L+ +NN++S 
Sbjct: 60  LELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 130 QIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG-PLPPSLINCVNL 188
           ++    G    + + L  N               +  L L  N ++         +   L
Sbjct: 113 RVSCSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 189 QFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSG 247
           + L++  N +   +   +    +L  LD+ +N L+  +     + + +  + +R NK   
Sbjct: 172 EHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL 228

Query: 248 SLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID-DTFLYWLDVLLQLQVLILRSNR 305
                         +  +L   Q LE  D+  N     T   +     ++Q +  ++ +
Sbjct: 229 --------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.0 bits (205), Expect = 9e-18
 Identities = 45/254 (17%), Positives = 96/254 (37%), Gaps = 37/254 (14%)

Query: 85  SLPDLPPHMVQ---LLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST-L 140
           ++ ++  +  +     ++++SL   + S   +  +++ L+LS N LS      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 141 ETLDLGMNNFQGSIPQTN-----------------AKGCNLTSLRLSGNHLEGPLPPSLI 183
           E L+L  N    ++   +                   G ++ +L  + N++   +  S  
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR-VSCS-- 117

Query: 184 NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSG-PIPECLANST-LEILDMR 241
                + + + NN ++       G  +R+ +LD+  N +      E  A+S  LE L+++
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 242 MNKFSGSLPQNIC----KKLCFG-----PLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDV 292
            N     +   +     K L         + P   +   +  + + NN++       L  
Sbjct: 178 YNFIY-DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRF 235

Query: 293 LLQLQVLILRSNRF 306
              L+   LR N F
Sbjct: 236 SQNLEHFDLRGNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.0 bits (205), Expect = 1e-17
 Identities = 36/243 (14%), Positives = 74/243 (30%), Gaps = 11/243 (4%)

Query: 11  NISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LP 68
            I+   D     + ++++LDL  N+I   +          TL+ L L  N +  +   + 
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

Query: 69  WKNLQYLTLDSNLLQGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126
           +  L+ L L SN L    P+      +  + + NN L   I  +     ++++ +L  N 
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 127 LSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCV 186
                 +   +       +     +    Q   +    T         E    P     +
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 187 NLQFLDVGNNNLSG----PIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMR 241
            L+  +    +  G     +     N  R   +D         I +          L+ +
Sbjct: 309 ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQK 368

Query: 242 MNK 244
              
Sbjct: 369 KKA 371

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 27/239 (11%), Positives = 63/239 (26%), Gaps = 12/239 (5%)

Query: 23  HQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLDSN 80
            +L+ LDLS N++   +           + ++ L  N L  I+      +NL++  L  N
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQ--SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247

Query: 81  LLQ-GSLPDLPPHMVQLL-ISNNSLTGEIPSSFCNLSSIQYLNLSNN---SLSGQIPQCL 135
               G+L D      ++  ++  ++      +    +     +        L       L
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 136 GNSTLETLDL--GMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDV 193
                +   L  G  +    +            +          +    +       L+ 
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 194 GNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQN 252
               L   +         L                    S L++L   + ++     + 
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 27/247 (10%), Positives = 64/247 (25%), Gaps = 18/247 (7%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---- 66
            ++      ++   + W+ L  N++   I   +       L+   L  N           
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALR--FSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 67  LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFC------NLSSIQYL 120
              + +Q +   +        +    +  L         ++P+ F              L
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 121 NLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPP 180
           +   +       +    +    +D     ++  I Q   +     +L      L+  +  
Sbjct: 319 SGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378

Query: 181 SLINCVNLQ---FLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEI 237
                  L       VG   L     E       L  +      +     + + N+ +  
Sbjct: 379 GRRAHAELDGTLQQAVGQIELQHATEE-QSPLQLLRAIVKRYEEMYVE-QQSVQNNAIRD 436

Query: 238 LDMRMNK 244
            DM  +K
Sbjct: 437 WDMYQHK 443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  107 bits (269), Expect = 4e-26
 Identities = 71/296 (23%), Positives = 109/296 (36%), Gaps = 36/296 (12%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW-KNLQYLTLDSNLL 82
            L  L L  NQI    P       +  L  L LS N ++ I  L    +LQ L+  + + 
Sbjct: 113 NLTGLTLFNNQITDIDPLK----NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT 168

Query: 83  QGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST-LE 141
                     + +L IS+N ++    S    L++++ L  +NN +S   P  LG  T L+
Sbjct: 169 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLD 224

Query: 142 TLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGP 201
            L L  N  +      +    NLT L L+ N +       L     L  L +G N +S  
Sbjct: 225 ELSLNGNQLKDIGTLASLT--NLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNI 280

Query: 202 IPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGP 261
            P  L   T L+ L++  N L   I        L  L +  N  S   P           
Sbjct: 281 SP--LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISP----------- 326

Query: 262 LPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF--WGPIGKLRS 315
               + +   L+ L   NN++ D  +  L  L  +  L    N+     P+  L  
Sbjct: 327 ----VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTR 376

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  101 bits (254), Expect = 5e-24
 Identities = 62/286 (21%), Positives = 105/286 (36%), Gaps = 36/286 (12%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW-KNLQYLTLDSNLL 82
           +     L K  +   +        +  +  L   +  + SID + +  NL  +   +N L
Sbjct: 25  EKMKTVLGKTNVTDTVS----QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 80

Query: 83  QGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTL 140
              +  L     +V +L++NN +    P    NL+++  L L NN ++  I      + L
Sbjct: 81  T-DITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNL 136

Query: 141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG 200
             L+L  N        +     +L  L       +      L N   L+ LD+ +N +S 
Sbjct: 137 NRLELSSNTISDISALSGLT--SLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD 191

Query: 201 PIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFG 260
                L   T L  L   NN +S  I      + L+ L +  N+                
Sbjct: 192 ISV--LAKLTNLESLIATNNQISD-ITPLGILTNLDELSLNGNQLKD------------- 235

Query: 261 PLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
               +L +   L  LD+ NNQI +  L  L  L +L  L L +N+ 
Sbjct: 236 --IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  100 bits (250), Expect = 1e-23
 Identities = 61/289 (21%), Positives = 110/289 (38%), Gaps = 32/289 (11%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW-KNLQYLTLDSNLL 82
            L+ L    NQ+    P       + TL+ L +S N ++ I  L    NL+ L   +N +
Sbjct: 157 SLQQLSFG-NQVTDLKPLA----NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI 211

Query: 83  QGSLP-DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLE 141
               P  +  ++ +L ++ N L      +  +L+++  L+L+NN +S  +    G + L 
Sbjct: 212 SDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-LAPLSGLTKLT 268

Query: 142 TLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGP 201
            L LG N      P        LT+L L+ N LE      + N  NL +L +  NN+S  
Sbjct: 269 ELKLGANQISNISPLAGLT--ALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDI 324

Query: 202 IPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGP 261
            P  + + T+L  L   NN +S  +      + +  L    N+ S               
Sbjct: 325 SP--VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISD-------------- 367

Query: 262 LPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI 310
               L N   +  L + +    +  + +   +     +   +     P 
Sbjct: 368 -LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 97.7 bits (244), Expect = 1e-22
 Identities = 60/265 (22%), Positives = 93/265 (35%), Gaps = 31/265 (11%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHL-PWKNLQYLTLDSNLL 82
            LE L  + NQI    P       +  L  L L+ N L  I  L    NL  L L +N +
Sbjct: 200 NLESLIATNNQISDITPLG----ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 255

Query: 83  QGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTL 140
             +L  L     + +L +  N ++   P     L+++  L L+ N L   I        L
Sbjct: 256 S-NLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISPISNLKNL 311

Query: 141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG 200
             L L  NN     P ++     L  L    N +      SL N  N+ +L  G+N +S 
Sbjct: 312 TYLTLYFNNISDISPVSSLT--KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367

Query: 201 PIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFG 260
             P  L N TR++ L + + + +       AN ++      +       P  I       
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL-IAPATIS------ 418

Query: 261 PLPPSLVNCQYLEVLDVGNNQIDDT 285
                  +       D+  N    T
Sbjct: 419 -------DGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.9 bits (221), Expect = 9e-20
 Identities = 60/255 (23%), Positives = 82/255 (32%), Gaps = 32/255 (12%)

Query: 54  LILSQNVLTSIDHLPW-KNLQYLTLDSNLLQGSLPDLP-PHMVQLLISNNSLTGEIPSSF 111
            I     +  I             L    +  ++       +  L      +        
Sbjct: 7   TITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK--SIDGV 64

Query: 112 CNLSSIQYLNLSNNSLSGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGCNLTSLRLS 170
             L+++  +N SNN L+   P  L N T L  + +  N      P  N    NLT L L 
Sbjct: 65  EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT--NLTGLTLF 120

Query: 171 GNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL 230
            N +       L N  NL  L++ +N +S      L   T L  L  GN          L
Sbjct: 121 NNQITD--IDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKPLANL 176

Query: 231 ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWL 290
               LE LD+  NK S                   L     LE L   NNQI D  +  L
Sbjct: 177 TT--LERLDISSNKVSD---------------ISVLAKLTNLESLIATNNQISD--ITPL 217

Query: 291 DVLLQLQVLILRSNR 305
            +L  L  L L  N+
Sbjct: 218 GILTNLDELSLNGNQ 232

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 19/199 (9%)

Query: 116 SIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE 175
            +    ++ ++   QI      +      LG  N   ++ QT+     +T+L+     ++
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLD--QVTTLQADRLGIK 59

Query: 176 GPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-ST 234
                 +    NL  ++  NN L+   P  L N T+L  + + NN ++   P  LAN + 
Sbjct: 60  S--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTN 113

Query: 235 LEILDMRMNKFSGSLPQNICKKLCFGPL-------PPSLVNCQYLEVLDVGNNQIDDTFL 287
           L  L +  N+ +   P      L    L         +L     L+ L  GN   D    
Sbjct: 114 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP- 172

Query: 288 YWLDVLLQLQVLILRSNRF 306
             L  L  L+ L + SN+ 
Sbjct: 173 --LANLTTLERLDISSNKV 189

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (269), Expect = 6e-26
 Identities = 58/281 (20%), Positives = 105/281 (37%), Gaps = 23/281 (8%)

Query: 9   TCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP 68
              + +  D+      +    L    I  R+  + ++ G   L+ +        ++    
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKL-- 324

Query: 69  WKNLQYLTLDSNLLQGSLPDLPPHMVQLL-ISNNSLT--GEIPSSFCNLSSIQYLNLSNN 125
            K+L+ LT  SN    +  ++    ++ L +S N L+  G    S    +S++YL+LS N
Sbjct: 325 -KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 126 SLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLIN 184
            +       LG   LE LD   +N +     +      NL  L +S  H           
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 185 CVNLQFLDVGNNNLSGPI-PECLGNSTRLSFLDVGNNSLSGPIPECLANST-LEILDMRM 242
             +L+ L +  N+      P+       L+FLD+    L    P    + + L++L+M  
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 243 NKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID 283
           N+   S+P  I     F  L         L+ + +  N  D
Sbjct: 504 NQLK-SVPDGI-----FDRLT-------SLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 98.6 bits (246), Expect = 6e-23
 Identities = 51/293 (17%), Positives = 99/293 (33%), Gaps = 24/293 (8%)

Query: 21  TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP-WKNLQYLTLDS 79
               +E   L+           +++  +  +    L    +  +         Q+L L +
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313

Query: 80  NLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQ-IPQC--LG 136
                        + +L  ++N        S  +L S+++L+LS N LS +        G
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 137 NSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPS-LINCVNLQFLDVGN 195
            ++L+ LDL  N    ++         L  L    ++L+     S  ++  NL +LD+ +
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 196 NNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN--STLEILDMRMNKFSGSLPQNI 253
            +            + L  L +  NS        +      L  LD+   +    L    
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 489

Query: 254 CKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
              L              L+VL++ +NQ+        D L  LQ + L +N +
Sbjct: 490 FNSL------------SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.9 bits (239), Expect = 5e-22
 Identities = 60/312 (19%), Positives = 111/312 (35%), Gaps = 34/312 (10%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHT-LQFLILSQNVLTSIDHLPW 69
           +++     ++    LE   L   + R       +D      L  L + +  L  +D+   
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 70  K---------NLQYLTLDSNLLQGSLPDLPPH--MVQLLISNNSLTGEIPSSFCNLSSIQ 118
                     N+   +L S  ++  + D   +     L + N             L S++
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQ---FPTLKLKSLK 328

Query: 119 YLNLSNNSLSGQIPQCLGNSTLETLDLGMN--NFQGSIPQTNAKGCNLTSLRLSGNHLEG 176
            L  ++N         +   +LE LDL  N  +F+G   Q++    +L  L LS N +  
Sbjct: 329 RLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 177 PLPPSLINCVNLQFLDVGNNNLSG-PIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-ST 234
            +  + +    L+ LD  ++NL          +   L +LD+ +              S+
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 235 LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLL 294
           LE+L M  N F  +   +I                + L  LD+   Q++       + L 
Sbjct: 447 LEVLKMAGNSFQENFLPDI------------FTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 295 QLQVLILRSNRF 306
            LQVL + SN+ 
Sbjct: 495 SLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.8 bits (236), Expect = 1e-21
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 30/262 (11%)

Query: 50  TLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPS 109
           + + L LS N L  +    + +   L                    L +S   +      
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQ------------------VLDLSRCEIQTIEDG 70

Query: 110 SFCNLSSIQYLNLSNNSLSGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGCNLTSLR 168
           ++ +LS +  L L+ N +           + L+ L     N              L  L 
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 169 LSGNHL-EGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSF----LDVGNNSLS 223
           ++ N +    LP    N  NL+ LD+ +N +       L    ++      LD+  N ++
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 224 GPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID 283
              P       L  L +R N  S ++ +   + L        L   + +         ++
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL------AGLEVHRLVLGEFRNEGNLE 244

Query: 284 DTFLYWLDVLLQLQVLILRSNR 305
                 L+ L  L +   R   
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAY 266

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 66/328 (20%), Positives = 113/328 (34%), Gaps = 42/328 (12%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---L 67
           N  + PD L      + LDLS N +R  + S+ +      LQ L LS+  + +I+     
Sbjct: 18  NFYKIPDNLPFS--TKNLDLSFNPLR-HLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 68  PWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN 124
              +L  L L  N +Q            + +L+    +L         +L +++ LN+++
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 125 NSL-SGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGCNLT----SLRLSGNHLEGPL 178
           N + S ++P+   N T LE LDL  N  Q            +     SL LS N +   +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-I 192

Query: 179 PPSLINCVNLQFLDVGNNNLSGPIPE-CLGNSTRLSFLDVGNN---------SLSGPIPE 228
            P     + L  L + NN  S  + + C+     L    +                   E
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 229 CLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLP----------PSLVNCQYLEVLDVG 278
            L N T+E   +    +      ++   L                         + L++ 
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312

Query: 279 NNQIDD-TFLYWLDVLLQLQVLILRSNR 305
           N +      L     L  L+ L   SN+
Sbjct: 313 NCKFGQFPTLK----LKSLKRLTFTSNK 336

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 63/320 (19%), Positives = 111/320 (34%), Gaps = 34/320 (10%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW---KNL 72
               ++   L  L L+ N I+          G+ +LQ L+  +  L S+++ P    K L
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 73  QYLTLDSNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQY----LNLSN 124
           + L +  NL+Q            ++  L +S+N +     +    L  +      L+LS 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 125 NSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKG-CNLTSLRL------SGNHLEGP 177
           N ++   P       L  L L  N    ++ +T  +G   L   RL      +  +LE  
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 178 LPPSLINCVNLQFLD---VGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST 234
              +L    NL   +      +     I +     T +S   + + ++   + +   N  
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFG 305

Query: 235 LEILDMRMNKFSGSLPQNICKKL-------CFGPLPPSLVNCQYLEVLDVGNNQID--DT 285
            + L++   KF    P    K L         G    S V+   LE LD+  N +     
Sbjct: 306 WQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 286 FLYWLDVLLQLQVLILRSNR 305
                     L+ L L  N 
Sbjct: 365 CSQSDFGTTSLKYLDLSFNG 384

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.5 bits (217), Expect = 4e-19
 Identities = 49/228 (21%), Positives = 77/228 (33%), Gaps = 22/228 (9%)

Query: 87  PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDL 145
            +LP     L +S N L      SF +   +Q L+LS   +         + S L TL L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 146 GMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNL-SGPIPE 204
             N  Q       +   +L  L     +L       + +   L+ L+V +N + S  +PE
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 205 CLGNSTRLSFLDVGNNSLSGPIPECLAN-----STLEILDMRMNKFSGSLPQNICKKLCF 259
              N T L  LD+ +N +       L            LD+ +N  +             
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF------------ 191

Query: 260 GPLPPSLVNCQYLEVLDVGNNQIDDTFL-YWLDVLLQLQVLILRSNRF 306
             + P       L  L + NN      +   +  L  L+V  L    F
Sbjct: 192 --IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 16/211 (7%)

Query: 99  SNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLGMNNFQGSIPQT 157
              +   +IP +     S + L+LS N L         +   L+ LDL     Q      
Sbjct: 15  MELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 158 NAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDV 217
                +L++L L+GN ++     +     +LQ L     NL+      +G+   L  L+V
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 218 GNNSL-SGPIPECLANST-LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVL 275
            +N + S  +PE  +N T LE LD+  NK   S+     + L   PL            L
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLL--------NLSL 182

Query: 276 DVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
           D+  N ++          ++L  L LR+N  
Sbjct: 183 DLSLNPMNFIQPGAFK-EIRLHKLTLRNNFD 212

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (259), Expect = 4e-25
 Identities = 73/325 (22%), Positives = 120/325 (36%), Gaps = 56/325 (17%)

Query: 10  CNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSID--- 65
             + + P  +L +  Q+E L+L+  QI   I ++ +    HT+Q L +  N +  +    
Sbjct: 55  STMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFA-YAHTIQKLYMGFNAIRYLPPHV 112

Query: 66  --HLPWKNLQYLTLDSNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQY 119
             ++P   L  L L+ N L     G   +  P +  L +SNN+L      +F   +S+Q 
Sbjct: 113 FQNVP--LLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQN 169

Query: 120 LNLSNNSLSG-----------------QIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC 162
           L LS+N L+                   +        +E LD   N+    +        
Sbjct: 170 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVNV-- 226

Query: 163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSL 222
            LT L+L  N+L       L+N   L  +D+  N L   +        RL  L + NN L
Sbjct: 227 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 223 SGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ 281
              +        TL++LD+  N                  +  +      LE L + +N 
Sbjct: 285 VA-LNLYGQPIPTLKVLDLSHNHLLH--------------VERNQPQFDRLENLYLDHNS 329

Query: 282 IDDTFLYWLDVLLQLQVLILRSNRF 306
           I    L  L     L+ L L  N +
Sbjct: 330 I--VTLK-LSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 91.6 bits (228), Expect = 6e-21
 Identities = 57/295 (19%), Positives = 113/295 (38%), Gaps = 40/295 (13%)

Query: 22  QHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLT 76
           Q+   + D+  +     +     DI ++  + +    + +  +     D      ++ L 
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR--QVELLN 75

Query: 77  LDSNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP 132
           L+   ++     +       + +L +  N++    P  F N+  +  L L  N LS  +P
Sbjct: 76  LNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 133 QCL--GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQF 190
           + +      L TL +  NN +     T     +L +L+LS N L   +  SLI   +L  
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIP--SLFH 190

Query: 191 LDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLP 250
            +V  N LS      L     +  LD  +NS++  +     N  L IL ++ N  +    
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSINV-VRG-PVNVELTILKLQHNNLTD--- 240

Query: 251 QNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
                          L+N   L  +D+  N+++    +    + +L+ L + +NR
Sbjct: 241 ------------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 17/163 (10%)

Query: 19  LRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHL-PWKNLQYLTL 77
           L     +E LD S N I   +   +       L  L L  N LT    L  +  L  + L
Sbjct: 201 LAIPIAVEELDASHNSIN-VVRGPV----NVELTILKLQHNNLTDTAWLLNYPGLVEVDL 255

Query: 78  DSNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ 133
             N L+         +   + +L ISNN L   +      + +++ L+LS+N L   + +
Sbjct: 256 SYNELEKIMYHPFVKMQ-RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 312

Query: 134 CLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE 175
                  LE L L  N+   ++  +      L +L LS N  +
Sbjct: 313 NQPQFDRLENLYLDHNSIV-TLKLSTHH--TLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 41/205 (20%), Positives = 66/205 (32%), Gaps = 41/205 (20%)

Query: 108 PSSFCNLSSIQYLN-LSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTS 166
           P   C  S++QY     +  +  Q           TL+                  N   
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLN------------------NQKI 49

Query: 167 LRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI 226
           +    + +       L +   ++ L++ +  +          +  +  L +G N++    
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109

Query: 227 PECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI--- 282
           P    N   L +L +  N  S SLP+ I     F   P        L  L + NN +   
Sbjct: 110 PHVFQNVPLLTVLVLERNDLS-SLPRGI-----FHNTP-------KLTTLSMSNNNLERI 156

Query: 283 -DDTFLYWLDVLLQLQVLILRSNRF 306
            DDTF         LQ L L SNR 
Sbjct: 157 EDDTF----QATTSLQNLQLSSNRL 177

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHL--P 68
           N+++    L     L  +DLS N++  +I    +   +  L+ L +S N L +++    P
Sbjct: 237 NLTDTAW-LLNYPGLVEVDLSYNELE-KIMYHPFV-KMQRLERLYISNNRLVALNLYGQP 293

Query: 69  WKNLQYLTLDSNLLQGSLPDLPPHMVQL---LISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
              L+ L L  N L   +    P   +L    + +NS+   +  S     +++ L LS+N
Sbjct: 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHN 349

Query: 126 SLS 128
              
Sbjct: 350 DWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWK 70
            +       +    L+ LDLS N +   +           L+ L L  N + ++      
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP--QFDRLENLYLDHNSIVTLKLSTHH 339

Query: 71  NLQYLTLDSNLLQG-SLPDLPPHMVQLLISNNSLTGEIPSSF 111
            L+ LTL  N     SL  L  ++ +  + +     +I    
Sbjct: 340 TLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQL 381

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (258), Expect = 1e-24
 Identities = 73/325 (22%), Positives = 120/325 (36%), Gaps = 56/325 (17%)

Query: 10  CNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSID--- 65
             + + P  +L +  Q+E L+L+  QI   I ++ +    HT+Q L +  N +  +    
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFA-YAHTIQKLYMGFNAIRYLPPHV 118

Query: 66  --HLPWKNLQYLTLDSNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQY 119
             ++P   L  L L+ N L     G   + P  +  L +SNN+L      +F   +S+Q 
Sbjct: 119 FQNVP--LLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQN 175

Query: 120 LNLSNNSLSG-----------------QIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC 162
           L LS+N L+                   +        +E LD   N+    +        
Sbjct: 176 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVNV-- 232

Query: 163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSL 222
            LT L+L  N+L       L+N   L  +D+  N L   +        RL  L + NN L
Sbjct: 233 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 223 SGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ 281
              +        TL++LD+  N                  +  +      LE L + +N 
Sbjct: 291 VA-LNLYGQPIPTLKVLDLSHNHLLH--------------VERNQPQFDRLENLYLDHNS 335

Query: 282 IDDTFLYWLDVLLQLQVLILRSNRF 306
           I    L  L     L+ L L  N +
Sbjct: 336 I--VTLK-LSTHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 89.6 bits (222), Expect = 7e-20
 Identities = 55/294 (18%), Positives = 113/294 (38%), Gaps = 38/294 (12%)

Query: 22  QHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLD 78
           Q+   + D+  +     +     DI ++  + +    + +  +       ++ ++ L L+
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 79  SNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQC 134
              ++     +       + +L +  N++    P  F N+  +  L L  N LS  +P+ 
Sbjct: 84  DLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRG 141

Query: 135 L--GNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLINCVNLQFL 191
           +      L TL +  NN +  I     +   +L +L+LS N L   +  SLI   +L   
Sbjct: 142 IFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIP--SLFHA 197

Query: 192 DVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQ 251
           +V  N LS      L     +  LD  +NS++           L IL ++ N  +     
Sbjct: 198 NVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVNVE--LTILKLQHNNLTD---- 246

Query: 252 NICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
                         L+N   L  +D+  N+++    +    + +L+ L + +NR
Sbjct: 247 -----------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.8 bits (168), Expect = 5e-13
 Identities = 44/196 (22%), Positives = 71/196 (36%), Gaps = 17/196 (8%)

Query: 19  LRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHL-PWKNLQYLTL 77
           L     +E LD S N I   +   +       L  L L  N LT    L  +  L  + L
Sbjct: 207 LAIPIAVEELDASHNSIN-VVRGPV----NVELTILKLQHNNLTDTAWLLNYPGLVEVDL 261

Query: 78  DSNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ 133
             N L+         +   + +L ISNN L   +      + +++ L+LS+N L      
Sbjct: 262 SYNELEKIMYHPFVKMQ-RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERN 319

Query: 134 CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDV 193
                 LE L L  N+   ++  +      L +L LS N  +     +L    N+    V
Sbjct: 320 QPQFDRLENLYLDHNSIV-TLKLSTHH--TLKNLTLSHNDWDCNSLRALFR--NVARPAV 374

Query: 194 GNNNLSGPIPECLGNS 209
            + +    I   L + 
Sbjct: 375 DDADQHCKIDYQLEHG 390

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 8e-10
 Identities = 37/208 (17%), Positives = 65/208 (31%), Gaps = 33/208 (15%)

Query: 100 NNSLTGEIPSSFCNLSSIQYLN-LSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTN 158
             ++    P   C  S++QY     +  +  Q           TL+              
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLN-------------- 51

Query: 159 AKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVG 218
               N   +    + +       L +   ++ L++ +  +          +  +  L +G
Sbjct: 52  ----NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 107

Query: 219 NNSLSGPIPECLANST-LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDV 277
            N++    P    N   L +L +  N  S SLP+ I     F   P        L  L +
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI-----FHNTP-------KLTTLSM 154

Query: 278 GNNQIDDTFLYWLDVLLQLQVLILRSNR 305
            NN ++            LQ L L SNR
Sbjct: 155 SNNNLERIEDDTFQATTSLQNLQLSSNR 182

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (255), Expect = 2e-24
 Identities = 66/332 (19%), Positives = 120/332 (36%), Gaps = 60/332 (18%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWK 70
           N++E P              + ++     P                 +  ++ +     +
Sbjct: 22  NLTEMPVEAENVKSKTEYYNAWSEWERNAP----------PGNGEQREMAVSRLRDCLDR 71

Query: 71  NLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG- 129
               L L++  L  SLP+LPPH+  L+ S NSLT E+P    +L S+   N +  +LS  
Sbjct: 72  QAHELELNNLGLS-SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 129

Query: 130 ---------------QIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHL 174
                          ++P+   +S L+ +D+  N+ +  +P       +L  +    N L
Sbjct: 130 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQL 185

Query: 175 EGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST 234
           E    P L N   L  +   NN+L   +P+   +   L  +  GNN L   +PE      
Sbjct: 186 EE--LPELQNLPFLTAIYADNNSLKK-LPDLPLS---LESIVAGNNILEE-LPELQNLPF 238

Query: 235 LEILDMRMNKFSGSLPQNICK-------KLCFGPLPPSLVNCQYLEVLDVGNNQIDDTF- 286
           L  +    N    +LP                  LP    +  +L+V +   + + +   
Sbjct: 239 LTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 297

Query: 287 -LYWLDV-----------LLQLQVLILRSNRF 306
            LY+L+               L+ L + +N+ 
Sbjct: 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (252), Expect = 8e-24
 Identities = 71/317 (22%), Positives = 121/317 (38%), Gaps = 49/317 (15%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW 69
             + + P++  +   L+ +D+  N ++ ++P         +L+F+    N L  +  L  
Sbjct: 141 NQLEKLPELQNSSF-LKIIDVDNNSLK-KLPDLP-----PSLEFIAAGNNQLEELPELQN 193

Query: 70  -KNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 128
              L  +  D+N L+  LPDLP  +  ++  NN L         NL  +  +   NN L 
Sbjct: 194 LPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK 250

Query: 129 GQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG--PLPPSLI--- 183
             +P    +  LE L++  N     +P+      +LT L +S N   G   LPP+L    
Sbjct: 251 -TLPDLPPS--LEALNVRDNYLT-DLPELP---QSLTFLDVSENIFSGLSELPPNLYYLN 303

Query: 184 -----------NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN 232
                         +L+ L+V NN L   +P        L  L    N L+  +PE   N
Sbjct: 304 ASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLAE-VPELPQN 358

Query: 233 STLEILDMRMNKFSGSLPQNIC--KKLCFGPLPPSLVN-CQYLEVLDVGNNQIDDTFLYW 289
             L+ L +  N      P      + L        +    Q L+ L V  N +      +
Sbjct: 359 --LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR----EF 411

Query: 290 LDVLLQLQVLILRSNRF 306
            D+   ++ L + S R 
Sbjct: 412 PDIPESVEDLRMNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 62/314 (19%), Positives = 118/314 (37%), Gaps = 63/314 (20%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP- 68
             + E P++      L  +    N ++ ++P         +L+ ++   N+L  +  L  
Sbjct: 183 NQLEELPELQN-LPFLTAIYADNNSLK-KLPDLP-----LSLESIVAGNNILEELPELQN 235

Query: 69  WKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNL-------------- 114
              L  +  D+NLL+ +LPDLPP +  L + +N LT ++P    +L              
Sbjct: 236 LPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS 293

Query: 115 ---SSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSG 171
               ++ YLN S+N +   +     +  LE L++  N     +P        L  L  S 
Sbjct: 294 ELPPNLYYLNASSNEIR-SLCDLPPS--LEELNVSNNKLI-ELPALP---PRLERLIASF 346

Query: 172 NHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA 231
           NHL   +P       NL+ L V  N L    P+   +   +  L + ++     +PE   
Sbjct: 347 NHLAE-VPELP---QNLKQLHVEYNPLRE-FPDIPES---VEDLRMNSHLAE--VPELPQ 396

Query: 232 NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLD 291
           N  L+ L +  N      P                     +E L + + ++ D + +  +
Sbjct: 397 N--LKQLHVETNPLR-EFPDIPES----------------VEDLRMNSERVVDPYEFAHE 437

Query: 292 VLLQLQVLILRSNR 305
              +L+  +   + 
Sbjct: 438 TTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.9 bits (247), Expect = 3e-23
 Identities = 77/305 (25%), Positives = 130/305 (42%), Gaps = 46/305 (15%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW- 69
           +++E P++ ++   L   + +   +    P          L++L +S N L  +  L   
Sbjct: 102 SLTELPELPQSLKSLLVDNNNLKALSDLPPL---------LEYLGVSNNQLEKLPELQNS 152

Query: 70  KNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
             L+ + +D+N L+  LPDLPP +  +   NN L  E+P    NL  +  +   NNSL  
Sbjct: 153 SFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK- 208

Query: 130 QIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQ 189
           ++P    +  LE++  G N  +  +P+       LT++    N L+  LP       +L+
Sbjct: 209 KLPDLPLS--LESIVAGNNILE-ELPELQNLP-FLTTIYADNNLLKT-LPDLP---PSLE 260

Query: 190 FLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSL 249
            L+V +N L+  +PE   +   L+FLDV  N  SG + E   N  L  L+   N+   SL
Sbjct: 261 ALNVRDNYLTD-LPELPQS---LTFLDVSENIFSG-LSELPPN--LYYLNASSNEIR-SL 312

Query: 250 PQNIC--KKL-----CFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQ-LQVLIL 301
                  ++L         LP        LE L    N + +     +  L Q L+ L +
Sbjct: 313 CDLPPSLEELNVSNNKLIELPALPPR---LERLIASFNHLAE-----VPELPQNLKQLHV 364

Query: 302 RSNRF 306
             N  
Sbjct: 365 EYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 83.5 bits (207), Expect = 6e-18
 Identities = 60/287 (20%), Positives = 102/287 (35%), Gaps = 49/287 (17%)

Query: 45  DIGVHTLQFLILSQNVLTSIDHLPW--KNLQYLTLDSNLLQGSLPD-------------- 88
           ++    LQ  +   + LT +       K+        +  + + P               
Sbjct: 7   NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 89  --LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDL 145
             L     +L ++N  L+  +P    +L   + L  S NSL+ ++P+   +  +L   + 
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 146 GMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPEC 205
            +       P        L  L +S N LE    P L N   L+ +DV NN+L   +P+ 
Sbjct: 122 NLKALSDLPP-------LLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKK-LPDL 171

Query: 206 LGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNIC--KKLCFG--- 260
             +   L F+  GNN L   +PE      L  +    N     LP      + +  G   
Sbjct: 172 PPS---LEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNI 226

Query: 261 -PLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
               P L N  +L  +   NN +        D+   L+ L +R N  
Sbjct: 227 LEELPELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYL 269

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 37/228 (16%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWK 70
            +   PD+      LE L++  N +   +P         +L FL +S+N+ + +  LP  
Sbjct: 248 LLKTLPDLPP---SLEALNVRDNYLT-DLPELP-----QSLTFLDVSENIFSGLSELP-P 297

Query: 71  NLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQ 130
           NL YL   SN ++ SL DLPP + +L +SNN L  E+P+    L   + L  S N L+ +
Sbjct: 298 NLYYLNASSNEIR-SLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-E 351

Query: 131 IPQCLGNSTLETLDLGMNNFQ---------------GSIPQTNAKGCNLTSLRLSGNHLE 175
           +P+   N  L+ L +  N  +                 + +      NL  L +  N L 
Sbjct: 352 VPELPQN--LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409

Query: 176 GPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS 223
              P       +++ L + +  +  P       + +L      ++   
Sbjct: 410 E-FPDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 28/137 (20%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW 69
             + E P +     +LE L  S N +   +P          L+ L +  N L     +P 
Sbjct: 327 NKLIELPALP---PRLERLIASFNHLA-EVPELPQ-----NLKQLHVEYNPLREFPDIPE 377

Query: 70  K------------------NLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSF 111
                              NL+ L +++N L+   PD+P  +  L +++  +      + 
Sbjct: 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDLRMNSERVVDPYEFAH 436

Query: 112 CNLSSIQYLNLSNNSLS 128
                ++     ++   
Sbjct: 437 ETTDKLEDDVFEHHHHH 453

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.7 bits (241), Expect = 2e-22
 Identities = 51/217 (23%), Positives = 93/217 (42%), Gaps = 16/217 (7%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSID-----HLPWK 70
            +  +    LE L LS+N IR  I    ++ G+  L  L L  N LT+I      +L   
Sbjct: 81  VNSFKHLRHLEILQLSRNHIR-TIEIGAFN-GLANLNTLELFDNRLTTIPNGAFVYLS-- 136

Query: 71  NLQYLTLDSNLLQGSLPDLPPHMVQL----LISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126
            L+ L L +N ++         +  L    L     L+     +F  LS+++YLNL+  +
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 127 LSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLINC 185
           L  +IP       L+ LDL  N+   +I   + +G  +L  L +  + ++     +  N 
Sbjct: 197 LR-EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 186 VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSL 222
            +L  +++ +NNL+    +       L  + + +N  
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.2 bits (211), Expect = 1e-18
 Identities = 48/222 (21%), Positives = 79/222 (35%), Gaps = 18/222 (8%)

Query: 87  PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDL 145
             +  +   L +  N +     +SF +L  ++ L LS N +           + L TL+L
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 146 GMNNFQGSIPQTNAKG-CNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPE 204
             N    +IP         L  L L  N +E     +     +L+ LD+G       I E
Sbjct: 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 205 -CLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLP 263
                 + L +L++   +L   IP       L+ LD+  N  S ++         F  L 
Sbjct: 179 GAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLS-AIRPGS-----FQGLM 231

Query: 264 PSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
                  +L+ L +  +QI        D L  L  + L  N 
Sbjct: 232 -------HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.6 bits (207), Expect = 5e-18
 Identities = 58/234 (24%), Positives = 96/234 (41%), Gaps = 23/234 (9%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSID-----HLPWKNLQYLTLD 78
               L+L +NQI+  I    +   +  L+ L LS+N + +I+      L   NL  L L 
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLA--NLNTLELF 120

Query: 79  SNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN----SLSGQ 130
            N L     G+   L   + +L + NN +      +F  + S++ L+L        +S  
Sbjct: 121 DNRLTTIPNGAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 131 IPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQF 190
             + L N  L  L+L M N +  IP        L  L LSGNHL    P S    ++LQ 
Sbjct: 180 AFEGLSN--LRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 191 LDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMN 243
           L +  + +         N   L  +++ +N+L+    +       LE + +  N
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 2e-17
 Identities = 60/267 (22%), Positives = 98/267 (36%), Gaps = 31/267 (11%)

Query: 49  HTLQFLILSQNVLTSI-DHLPWKNLQYLTLDSNLL----QGSLPDLPPHMVQLLISNNSL 103
           +    +I  +  L  + D +   N + L L  N +      S   L  H+  L +S N +
Sbjct: 43  NQFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHI 100

Query: 104 TGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGC 162
                 +F  L+++  L L +N L+          S L+ L L  N  + SIP       
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRI 159

Query: 163 -NLTSLRLSG-NHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNN 220
            +L  L L     L      +     NL++L++   NL   IP  L    +L  LD+  N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGN 217

Query: 221 SLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGN 279
            LS   P        L+ L M  ++    + +N      F  L         L  +++ +
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNA-----FDNLQ-------SLVEINLAH 264

Query: 280 NQIDDTFLYW--LDVLLQLQVLILRSN 304
           N +  T L       L  L+ + L  N
Sbjct: 265 NNL--TLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 35/201 (17%), Positives = 70/201 (34%), Gaps = 19/201 (9%)

Query: 108 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSL 167
           PS     +    +     +L  ++P  + ++    L+L  N  Q     +     +L  L
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEIL 93

Query: 168 RLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIP 227
           +LS NH+      +     NL  L++ +N L+          ++L  L + NN +     
Sbjct: 94  QLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153

Query: 228 ECLAN-STLEILDM-RMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT 285
                  +L  LD+  + + S  + +             +      L  L++    +   
Sbjct: 154 YAFNRIPSLRRLDLGELKRLS-YISEG------------AFEGLSNLRYLNLAMCNL--R 198

Query: 286 FLYWLDVLLQLQVLILRSNRF 306
            +  L  L++L  L L  N  
Sbjct: 199 EIPNLTPLIKLDELDLSGNHL 219

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.7 bits (241), Expect = 2e-22
 Identities = 52/217 (23%), Positives = 87/217 (40%), Gaps = 16/217 (7%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSID-----HLPWK 70
            D  R  H LE L L +N IR +I    ++ G+ +L  L L  N LT I      +L   
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIR-QIEVGAFN-GLASLNTLELFDNWLTVIPSGAFEYLS-- 147

Query: 71  NLQYLTLDSNLLQGSLPDLPPHMVQL----LISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126
            L+ L L +N ++         +  L    L     L      +F  L +++YLNL   +
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 127 LSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKG-CNLTSLRLSGNHLEGPLPPSLINC 185
           +   +P       LE L++  N+F   I   +  G  +L  L +  + +      +    
Sbjct: 208 IK-DMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265

Query: 186 VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSL 222
            +L  L++ +NNLS    +       L  L + +N  
Sbjct: 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 23/234 (9%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSID-----HLPWKNLQYLTLD 78
              +L+L +N I+  I +  +   +H L+ L L +N +  I+      L   +L  L L 
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLA--SLNTLELF 131

Query: 79  SNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP-- 132
            N L     G+   L   + +L + NN +      +F  + S+  L+L        I   
Sbjct: 132 DNWLTVIPSGAFEYLS-KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 133 --QCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQF 190
             + L N  L+ L+LGM N +  +P        L  L +SGNH     P S     +L+ 
Sbjct: 191 AFEGLFN--LKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246

Query: 191 LDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMN 243
           L V N+ +S            L  L++ +N+LS    +       L  L +  N
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.6 bits (207), Expect = 6e-18
 Identities = 50/226 (22%), Positives = 80/226 (35%), Gaps = 26/226 (11%)

Query: 87  PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDL 145
             +P +   L +  N++      +F +L  ++ L L  NS+           ++L TL+L
Sbjct: 71  QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130

Query: 146 GMNNFQGSIPQTNAKG-CNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPE 204
             N     IP    +    L  L L  N +E     +     +L  LD+G       I E
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 205 -CLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLP 263
                   L +L++G  ++   +P       LE L+M  N F   +         F  L 
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFP-EIRPG-----SFHGLS 242

Query: 264 PSLVNCQYLEVLDVGNNQI----DDTFLYWLDVLLQLQVLILRSNR 305
                   L+ L V N+Q+     + F      L  L  L L  N 
Sbjct: 243 -------SLKKLWVMNSQVSLIERNAFDG----LASLVELNLAHNN 277

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 37/195 (18%), Positives = 70/195 (35%), Gaps = 19/195 (9%)

Query: 115 SSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNH 173
           +    +  +   LS ++PQ +  S    L+L  NN Q  I     +   +L  L+L  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI-PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 174 LEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN- 232
           +      +     +L  L++ +N L+          ++L  L + NN +           
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 233 STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDV 292
            +L  LD+   K    + +             +      L+ L++G   I    +  L  
Sbjct: 171 PSLMRLDLGELKKLEYISEG------------AFEGLFNLKYLNLGMCNI--KDMPNLTP 216

Query: 293 LLQLQVLILRSNRFW 307
           L+ L+ L +  N F 
Sbjct: 217 LVGLEELEMSGNHFP 231

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.2 bits (232), Expect = 8e-22
 Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 32/240 (13%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI----DHLPWKN 71
             +     QL  L LS N +  +      D G  +L++L LS N + ++      L    
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE--Q 102

Query: 72  LQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQI 131
           L++L    + L+  + +                    S F +L ++ YL++S+       
Sbjct: 103 LEHLDFQHSNLK-QMSE-------------------FSVFLSLRNLIYLDISHTHTR-VA 141

Query: 132 PQCL--GNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLINCVNL 188
              +  G S+LE L +  N+FQ +          NLT L LS   LE   P +  +  +L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 189 QFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN--STLEILDMRMNKFS 246
           Q L++ +NN              L  LD   N +     + L +  S+L  L++  N F+
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 52/251 (20%), Positives = 93/251 (37%), Gaps = 35/251 (13%)

Query: 50  TLQFLILSQNVLTSI-----DHLPWKNLQYLTLDSNLLQ------GSLPDLPPHMVQLLI 98
           +   L L  N L S+     D L    L  L+L SN L        S       +  L +
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLT--QLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDL 85

Query: 99  SNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQC---LGNSTLETLDLGMNNFQGSIP 155
           S N +   + S+F  L  +++L+  +++L  Q+ +    L    L  LD+   + +    
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAF 142

Query: 156 QTNAKGC-NLTSLRLSGNHLEGPLPP-SLINCVNLQFLDVGNNNLSGPIPECLGNSTRLS 213
                G  +L  L+++GN  +    P       NL FLD+    L    P    + + L 
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 214 FLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYL 272
            L++ +N+            ++L++LD  +N    +  +           P S      L
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQE-----LQHFPSS------L 250

Query: 273 EVLDVGNNQID 283
             L++  N   
Sbjct: 251 AFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.8 bits (213), Expect = 3e-19
 Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 20/225 (8%)

Query: 87  PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQC---LGNSTLETL 143
             +P    +L + +N L       F  L+ +  L+LS+N LS +        G ++L+ L
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 144 DLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL-INCVNLQFLDVGNNNLSGPI 202
           DL  N    ++         L  L    ++L+     S+ ++  NL +LD+ + +     
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 203 PECLGNSTRLSFLDV-GNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFG 260
                  + L  L + GN+     +P+       L  LD+   +    L         F 
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA-----FN 196

Query: 261 PLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
            L         L+VL++ +N       +    L  LQVL    N 
Sbjct: 197 SLS-------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 34/175 (19%), Positives = 71/175 (40%), Gaps = 18/175 (10%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----D 65
            +           QLE LD   + ++ ++  +   + +  L +L +S            +
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 66  HLPWKNLQYLTLDSNLLQGSLPD----LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLN 121
            L   +L+ L +  N  Q +          ++  L +S   L    P++F +LSS+Q LN
Sbjct: 148 GLS--SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 122 LSNNSLSGQIPQCL--GNSTLETLDLGMNNFQGSIPQTNAKGC--NLTSLRLSGN 172
           +S+N+    +        ++L+ LD  +N+   +  +   +    +L  L L+ N
Sbjct: 206 MSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 16/147 (10%)

Query: 163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLS--GPIPECLGNSTRLSFLDVGNN 220
           + T L L  N L+            L  L + +N LS  G   +    +T L +LD+  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 221 SLSGPIPECLANST-LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGN 279
            +   +         LE LD + +        ++     F  L         L  LD+ +
Sbjct: 89  GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV-----FLSLR-------NLIYLDISH 135

Query: 280 NQIDDTFLYWLDVLLQLQVLILRSNRF 306
                 F    + L  L+VL +  N F
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSF 162

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.1 bits (226), Expect = 5e-21
 Identities = 55/283 (19%), Positives = 94/283 (33%), Gaps = 40/283 (14%)

Query: 49  HTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLP------PHMVQLLISNNS 102
           + L+ +    ++    D +   +L+ LT+ +  +   +            + +L + N  
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 103 LTGEIPSS--FCNLSSIQYLNLSNNSLSGQIP-----QCLGNSTLETLDLGMNNFQGSIP 155
           +TG  P          +  LNL N S + +       Q      L+ L +   +      
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 156 QTNAKGCNLTSLRLSGNHLEGPLPPSLINCV----NLQFLDVGNNN---LSGPIPECLGN 208
           +       L++L LS N   G        C      LQ L + N      SG        
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 209 STRLSFLDVGNNSLSGPIPE--CLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSL 266
             +L  LD+ +NSL        C   S L  L++        +P+ +  KL         
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKL--------- 276

Query: 267 VNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP 309
                  VLD+  N++        D L Q+  L L+ N F   
Sbjct: 277 ------SVLDLSYNRL--DRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.8 bits (220), Expect = 3e-20
 Identities = 56/261 (21%), Positives = 89/261 (34%), Gaps = 27/261 (10%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHT-LQFLILSQNVLT-----S 63
            ++ +F DI+++   L+ L +   +I  RI      +   + LQ L L    +T      
Sbjct: 56  ADLGQFTDIIKS-LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114

Query: 64  IDHLPWKNLQYLTLDSNLLQGSLPDLP-------PHMVQLLISNNSLTGEIPSSFCNLSS 116
           +      +L  L L +         L        P +  L I+                +
Sbjct: 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174

Query: 117 IQYLNLSNNSLSGQIP----QCLGN-STLETLDLGMNNFQ---GSIPQTNAKGCNLTSLR 168
           +  L+LS+N   G+       C     TL+ L L     +   G      A    L  L 
Sbjct: 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

Query: 169 LSGNHLEG-PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIP 227
           LS N L      PS      L  L++    L   +P+ L    +LS LD+  N L    P
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLSYNRLDR-NP 290

Query: 228 ECLANSTLEILDMRMNKFSGS 248
                  +  L ++ N F  S
Sbjct: 291 SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.6 bits (126), Expect = 5e-08
 Identities = 37/217 (17%), Positives = 57/217 (26%), Gaps = 17/217 (7%)

Query: 113 NLSSIQYLNLSNNSLS-GQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCN---LTSLR 168
             S    L   +     GQ    + + +L+ L +        I     +      L  L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 169 LSGNHLEGPLPPSLINCV--NLQFLDVGNNNLSGPIPECLGNS----TRLSFLDVGNNSL 222
           L    + G  PP L+     +L  L++ N + +                L  L +     
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 223 SG-PIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ 281
                 +      L  LD+  N   G         L     P      Q L + + G   
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERG------LISALCPLKFPTLQVLALRNAGMET 215

Query: 282 IDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWS 318
                       +QLQ L L  N      G     W 
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 19/165 (11%)

Query: 165 TSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPEC---LGNSTRLSFLDVGNNS 221
             L+      +      +I  ++L+ L V    +   I      +   + L  L + N  
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 222 LSGPIP---ECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNC--QYLEVLD 276
           ++G  P          L IL++R   ++                   L       L+VL 
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWAT-----------RDAWLAELQQWLKPGLKVLS 155

Query: 277 VGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHF 321
           +      +     + V   L  L L  N   G  G + +     F
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.4 bits (222), Expect = 8e-20
 Identities = 57/306 (18%), Positives = 112/306 (36%), Gaps = 31/306 (10%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWK 70
           + +  P  L     ++ LDLS N+I   I           LQ LIL  + + +I+   + 
Sbjct: 16  SFTSIPSGLTAA--MKSLDLSFNKIT-YIGHGDLR-ACANLQVLILKSSRINTIEGDAFY 71

Query: 71  NLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG- 129
           +L  L                    L +S+N L+    S F  LSS++YLNL  N     
Sbjct: 72  SLGSLE------------------HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113

Query: 130 QIPQCLGNST-LETLDLGMNNFQGSIPQTNAKG-CNLTSLRLSGNHLEGPLPPSLINCVN 187
            +     N T L+TL +G       I + +  G  +L  L +    L      SL +  +
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173

Query: 188 LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS----GPIPECLANSTLEILDMRMN 243
           +  L +  +  +  +       + + +L++ + +L+     P+P    +S ++ L  R +
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 244 KFSGSLPQNICK--KLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLIL 301
             +      + K  +           +C    + D   ++ D          + ++ L +
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 302 RSNRFW 307
                +
Sbjct: 294 PQFYLF 299

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 88.6 bits (220), Expect = 1e-19
 Identities = 39/234 (16%), Positives = 86/234 (36%), Gaps = 29/234 (12%)

Query: 15  FPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQY 74
              +     +++ + +  +++   +P       + +L+FL LS+N++             
Sbjct: 302 LSTVYSLLEKVKRITVENSKVF-LVPCSFSQ-HLKSLEFLDLSENLMVEE---------- 349

Query: 75  LTLDSNLLQGSLPDLPPHMVQLLISNNSLT--GEIPSSFCNLSSIQYLNLSNNSLSGQIP 132
             L ++  +G+ P L      L++S N L    +       L ++  L++S N+      
Sbjct: 350 -YLKNSACKGAWPSL----QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404

Query: 133 QCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLD 192
            C     +  L+L     +  +     +   L  L +S N+L+      L     LQ L 
Sbjct: 405 SCQWPEKMRFLNLSSTGIR-VVKTCIPQ--TLEVLDVSNNNLDS-FSLFL---PRLQELY 457

Query: 193 VGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKF 245
           +  N L   +P+       L  + +  N L           ++L+ + +  N +
Sbjct: 458 ISRNKLKT-LPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.3 bits (214), Expect = 9e-19
 Identities = 53/322 (16%), Positives = 100/322 (31%), Gaps = 46/322 (14%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW----KN 71
            D   +   LE LDLS N +     SW     + +L++L L  N   ++          N
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFG--PLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 72  LQYLTLDSNLLQGSLPDLP----PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127
           LQ L + +      +  +       + +L I   SL      S  ++  I +L L  +  
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 128 SGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCV 186
           +  +       S++  L+L   N               + ++            S    +
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 187 ----------NLQFLDVGNNNLSGPIPECLGNSTRLSF--------LDVGNNSLSGPIPE 228
                      ++F D   N L    P      + L          L +    L   +  
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 229 CLANST-LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL 287
             +    ++ + +  +K    +P +  + L            + LE LD+  N + + +L
Sbjct: 305 VYSLLEKVKRITVENSKVF-LVPCSFSQHL------------KSLEFLDLSENLMVEEYL 351

Query: 288 YW---LDVLLQLQVLILRSNRF 306
                      LQ L+L  N  
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.9 bits (205), Expect = 1e-17
 Identities = 50/246 (20%), Positives = 87/246 (35%), Gaps = 34/246 (13%)

Query: 50  TLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLI---SNNSL 103
           T++ L + Q  L           + ++ +T++++ +         H+  L     S N +
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

Query: 104 TGEI---PSSFCNLSSIQYLNLSNN---SLSGQIPQCLGNSTLETLDLGMNNFQGSIPQT 157
             E     +      S+Q L LS N   S+       L    L +LD+  N F   +P +
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405

Query: 158 NAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDV 217
                 +  L LS   +   +   +     L+ LDV NNNL       L    RL  L +
Sbjct: 406 CQWPEKMRFLNLSSTGIRV-VKTCIPQ--TLEVLDVSNNNLDS-FSLFL---PRLQELYI 458

Query: 218 GNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDV 277
             N L   +P+      L ++ +  N+   S+P  I                  L+ + +
Sbjct: 459 SRNKLKT-LPDASLFPVLLVMKISRNQLK-SVPDGI------------FDRLTSLQKIWL 504

Query: 278 GNNQID 283
             N  D
Sbjct: 505 HTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.2 bits (198), Expect = 8e-17
 Identities = 41/330 (12%), Positives = 96/330 (29%), Gaps = 48/330 (14%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYL 75
              L++   +  L L  ++    +     D  + ++++L L    L      P    +  
Sbjct: 165 SQSLKSIRDIHHLTLHLSESA-FLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVS 222

Query: 76  TL--DSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ 133
           +           L D   + +  L+       E+    C L+ +   N S + +  ++ +
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282

Query: 134 CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDV 193
            +   T+  L +        +    +    +  + +  + +         +  +L+FLD+
Sbjct: 283 -VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341

Query: 194 GNNNLS-----------------------------GPIPECLGNSTRLSFLDVGNNSLSG 224
             N +                                  E L     L+ LD+  N+   
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP 401

Query: 225 PIPECLANSTLEILDMRMNKFSGSLPQNICKKL--------CFGPLPPSLVNCQYLEVLD 276
               C     +  L++        +   I + L                L     L+ L 
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPR---LQELY 457

Query: 277 VGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
           +  N++    L    +   L V+ +  N+ 
Sbjct: 458 ISRNKL--KTLPDASLFPVLLVMKISRNQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.5 bits (186), Expect = 3e-15
 Identities = 42/308 (13%), Positives = 84/308 (27%), Gaps = 22/308 (7%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYL 75
                    L  L++    +R      +  I    +  L L  +    +  +    L  +
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSI--RDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 76  T-LDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQC 134
             L+      +     P  V  + S         S   + S  + L L    L     + 
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

Query: 135 LGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVG 194
              +     D   +           +   +  L +   +L   L         ++ + V 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 195 NNNLSGPIPECLGNSTRLSFLDVGNNSLS-GPIPECLANST---LEILDMRMNKFSG-SL 249
           N+ +         +   L FLD+  N +    +           L+ L +  N       
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 250 PQNICKKLC-----------FGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQV 298
              I   L            F P+P S    + +  L++ +  I         +   L+V
Sbjct: 379 TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK---TCIPQTLEV 435

Query: 299 LILRSNRF 306
           L + +N  
Sbjct: 436 LDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 27/188 (14%)

Query: 138 STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN 197
                 D    +F  SIP        + SL LS N +       L  C NLQ L + ++ 
Sbjct: 5   DASGVCDGRSRSFT-SIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 198 LSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKK 256
           ++    +   +   L  LD+ +N LS          S+L+ L++  N +  +L       
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVT---- 116

Query: 257 LCFGPLP------------------PSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQV 298
             F  L                           L  L++    + +     L  +  +  
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176

Query: 299 LILRSNRF 306
           L L  +  
Sbjct: 177 LTLHLSES 184

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 84.2 bits (209), Expect = 4e-18
 Identities = 71/362 (19%), Positives = 121/362 (33%), Gaps = 82/362 (22%)

Query: 10  CNISE-----FPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVH-----------TLQF 53
           C ++          LRT   L+ L LS N +         D G+             L+ 
Sbjct: 95  CCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG--------DAGLQLLCEGLLDPQCRLEK 146

Query: 54  LILSQNVLTSID--HL-----PWKNLQYLTLDSN--------LLQGSLPDLPPHMVQLLI 98
           L L    L++     L        + + LT+ +N        +L   L D P  +  L +
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206

Query: 99  SNNSLTGE----IPSSFCNLSSIQYLNLSNNSLSGQIPQCLG------NSTLETLDLGMN 148
            +  +T +    +     + +S++ L L +N L       L       +S L TL +   
Sbjct: 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266

Query: 149 NFQ----GSIPQTNAKGCNLTSLRLSGNHLEGP----LPPSLINC-VNLQFLDVGNNNLS 199
                  G + +      +L  L L+GN L       L  +L+     L+ L V + + +
Sbjct: 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

Query: 200 G----PIPECLGNSTRLSFLDVGNNSLSGPIPECLA------NSTLEILDMRMNKFSGSL 249
                     L  +  L  L + NN L       L        S L +L +     S S 
Sbjct: 327 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS- 385

Query: 250 PQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQ-----LQVLILRSN 304
                       L  +L+    L  LD+ NN + D  +  L   ++     L+ L+L   
Sbjct: 386 --------SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437

Query: 305 RF 306
            +
Sbjct: 438 YW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.7 bits (192), Expect = 6e-16
 Identities = 62/334 (18%), Positives = 112/334 (33%), Gaps = 65/334 (19%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWK----------NLQY 74
           ++ LD+   ++     + +    +   Q + L    LT       K           L  
Sbjct: 5   IQSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEAR---CKDISSALRVNPALAE 60

Query: 75  LTLDSNLLQGS--------LPDLPPHMVQLLISNNSLTGE----IPSSFCNLSSIQYLNL 122
           L L SN L           L      + +L + N  LTG     + S+   L ++Q L+L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 123 SNNSLSGQIPQCLG------NSTLETLDLGMNNFQGSIPQTNAKG----CNLTSLRLSGN 172
           S+N L     Q L          LE L L   +   +  +  A       +   L +S N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 173 HLEGP----LPPSLI-NCVNLQFLDVGNNNLS----GPIPECLGNSTRLSFLDVGNNSLS 223
            +       L   L  +   L+ L + +  ++      +   + +   L  L +G+N L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 224 GPIPECLA------NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDV 277
                 L       +S L  L +     +     ++C+          L   + L+ L +
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR---------VLRAKESLKELSL 291

Query: 278 GNNQIDDTFLYWL-----DVLLQLQVLILRSNRF 306
             N++ D     L     +   QL+ L ++S  F
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 74.6 bits (184), Expect = 6e-15
 Identities = 52/275 (18%), Positives = 90/275 (32%), Gaps = 47/275 (17%)

Query: 70  KNLQYLTLDSNLLQGS----LPDLPPHMVQLLISNNSLTGE----IPSSFCNLSSIQYLN 121
            ++Q L +    L  +    L  L      + + +  LT      I S+     ++  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 122 LSNNSLSGQIPQCLG------NSTLETLDLGMNNFQ----GSIPQTNAKGCNLTSLRLSG 171
           L +N L      C+       +  ++ L L          G +  T      L  L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 172 NHLEGPLPPSLI-----NCVNLQFLDVGNNNLS----GPIPECLGNSTRLSFLDVGNNSL 222
           N L       L          L+ L +   +LS     P+   L        L V NN +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 223 SGP----IPECLANS--TLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLD 276
           +      + + L +S   LE L +     +       C+ LC       + +   L  L 
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSD----NCRDLCGI-----VASKASLRELA 233

Query: 277 VGNNQIDDTFL-----YWLDVLLQLQVLILRSNRF 306
           +G+N++ D  +       L    +L+ L +     
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.8 bits (174), Expect = 9e-14
 Identities = 62/329 (18%), Positives = 100/329 (30%), Gaps = 78/329 (23%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQ 83
           +++ L L    +           G   L    L               LQ L L  NLL 
Sbjct: 86  KIQKLSLQNCCLT--------GAGCGVL-SSTLRTL----------PTLQELHLSDNLLG 126

Query: 84  GS--------LPDLPPHMVQLLISNNSLTGE----IPSSFCNLSSIQYLNLSNNSLSGQ- 130
            +        L D    + +L +   SL+      + S        + L +SNN ++   
Sbjct: 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186

Query: 131 ---IPQCLGNS--TLETLDLGMNNFQ----GSIPQTNAKGCNLTSLRLSGNHL------- 174
              + Q L +S   LE L L            +    A   +L  L L  N L       
Sbjct: 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246

Query: 175 --EGPLPPSLINCVNLQFLDVGNNNLSGP----IPECLGNSTRLSFLDVGNNSLSGPIPE 228
              G L P   +   L+ L +    ++      +   L     L  L +  N L      
Sbjct: 247 LCPGLLHP---SS-RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 229 CLA------NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI 282
            L          LE L ++   F+ +   +             L   ++L  L + NN++
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSS---------VLAQNRFLLELQISNNRL 353

Query: 283 DDTFLYWLDVLLQ-----LQVLILRSNRF 306
           +D  +  L   L      L+VL L     
Sbjct: 354 EDAGVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 49/306 (16%), Positives = 89/306 (29%), Gaps = 70/306 (22%)

Query: 19  LRTQHQLEWLDLSKNQIRGRIPSWMWDIGVH-----------TLQFLILSQNVLTSIDHL 67
           LR +   + L +S N I         + GV             L+ L L    +TS +  
Sbjct: 166 LRAKPDFKELTVSNNDIN--------EAGVRVLCQGLKDSPCQLEALKLESCGVTSDN-- 215

Query: 68  PWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGE-----IPSSFCNLSSIQYLNL 122
             ++L        ++          + +L + +N L         P      S ++ L +
Sbjct: 216 -CRDL------CGIVASK-----ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 123 SNNSLSGQIPQCLG-----NSTLETLDLGMNNFQGSIPQTNAKG-----CNLTSLRLSGN 172
               ++ +    L        +L+ L L  N       +   +      C L SL +   
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 173 HLEG----PLPPSLINCVNLQFLDVGNNNLSGPIPECLG-----NSTRLSFLDVGNNSLS 223
                        L     L  L + NN L       L        + L  L + +  +S
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

Query: 224 GPIPECLA-----NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVG 278
                 LA     N +L  LD+  N    +    + + +              LE L + 
Sbjct: 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR--------QPGCLLEQLVLY 435

Query: 279 NNQIDD 284
           +    +
Sbjct: 436 DIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 27/189 (14%)

Query: 137 NSTLETLDLGMNNFQ-GSIPQTNAKGCNLTSLRLSGNHL--EG--PLPPSLINCVNLQFL 191
           +  +++LD+           +          +RL    L       +  +L     L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 192 DVGNNNLSGP----IPECLG-NSTRLSFLDVGNNSLS----GPIPECLA-NSTLEILDMR 241
           ++ +N L       + + L   S ++  L + N  L+    G +   L    TL+ L + 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 242 MNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQ----LQ 297
            N    +  Q +C+ L        L     LE L +    +       L  +L+     +
Sbjct: 122 DNLLGDAGLQLLCEGL--------LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173

Query: 298 VLILRSNRF 306
            L + +N  
Sbjct: 174 ELTVSNNDI 182

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 5e-18
 Identities = 53/212 (25%), Positives = 81/212 (38%), Gaps = 22/212 (10%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLDS 79
            + + L  N+I   +P+  +      L  L L  NVL  I       L    L+ L L  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFR-ACRNLTILWLHSNVLARIDAAAFTGLA--LLEQLDLSD 89

Query: 80  NLLQGSLP-----DLPPHMVQLLISNNSLTGEIPS-SFCNLSSIQYLNLSNNSLSGQIPQ 133
           N    S+       L   +  L +    L  E+    F  L+++QYL L +N+L   +P 
Sbjct: 90  NAQLRSVDPATFHGLG-RLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPD 146

Query: 134 CL--GNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLINCVNLQF 190
                   L  L L  N    S+P+   +G  +L  L L  N +    P +  +   L  
Sbjct: 147 DTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 191 LDVGNNNLSGPIPECLGNSTRLSFLDVGNNSL 222
           L +  NNLS    E L     L +L + +N  
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.7 bits (197), Expect = 3e-17
 Identities = 48/223 (21%), Positives = 81/223 (36%), Gaps = 20/223 (8%)

Query: 87  PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL--GNSTLETLD 144
             +P    ++ +  N ++    +SF    ++  L L +N L+ +I      G + LE LD
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLD 86

Query: 145 LGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPP-SLINCVNLQFLDVGNNNLSGPI 202
           L  N    S+      G   L +L L    L+  L P        LQ+L + +N L    
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALP 145

Query: 203 PECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGP 261
            +   +   L+ L +  N +S           +L+ L +  N+ +  +  +      F  
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPH-----AFRD 199

Query: 262 LPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSN 304
           L         L  L +  N +       L  L  LQ L L  N
Sbjct: 200 LG-------RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 43/169 (25%), Positives = 62/169 (36%), Gaps = 18/169 (10%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWK 70
                    LE LDLS N     +    +  G+  L  L L +  L  +       L   
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLA-- 129

Query: 71  NLQYLTLDSNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126
            LQYL L  N LQ     +  DL  ++  L +  N ++     +F  L S+  L L  N 
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 127 LSGQIPQCL--GNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGN 172
           ++  +          L TL L  NN   ++P         L  LRL+ N
Sbjct: 189 VA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 17/147 (11%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWK 70
           P       +L  L L +  ++  +   ++  G+  LQ+L L  N L ++       L   
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQ-ELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLG-- 153

Query: 71  NLQYLTLDSNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126
           NL +L L  N +      +   L   + +LL+  N +    P +F +L  +  L L  N+
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 127 LSGQIPQCL--GNSTLETLDLGMNNFQ 151
           LS  +P         L+ L L  N + 
Sbjct: 213 LS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 36/196 (18%), Positives = 59/196 (30%), Gaps = 17/196 (8%)

Query: 112 CNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSG 171
           C        +     L   +P  +  +  + + L  N        +     NLT L L  
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 172 NHLEGPLPPSLINCVNLQFLDVGNNNLSGPIP-ECLGNSTRLSFLDVGNNSLSGPIPECL 230
           N L      +      L+ LD+ +N     +         RL  L +    L    P   
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125

Query: 231 AN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYW 289
              + L+ L ++ N    +LP +               +   L  L +  N+I       
Sbjct: 126 RGLAALQYLYLQDNALQ-ALPDDT------------FRDLGNLTHLFLHGNRISSVPERA 172

Query: 290 LDVLLQLQVLILRSNR 305
              L  L  L+L  NR
Sbjct: 173 FRGLHSLDRLLLHQNR 188

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 28/147 (19%), Positives = 43/147 (29%), Gaps = 15/147 (10%)

Query: 162 CNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNS 221
                + L GN +      S   C NL  L + +N L+            L  LD+ +N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 222 LSGPIP-ECLANST-LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGN 279
               +          L  L +        L   +     F  L         L+ L + +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL-----FRGLA-------ALQYLYLQD 138

Query: 280 NQIDDTFLYWLDVLLQLQVLILRSNRF 306
           N +          L  L  L L  NR 
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRI 165

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 8e-18
 Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 26/229 (11%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWK 70
              L+    L+ L L+ N I   I    +   + +L+ L LS N L+++       L   
Sbjct: 69  NSDLQRCVNLQALVLTSNGIN-TIEEDSFS-SLGSLEHLDLSYNYLSNLSSSWFKPLS-- 124

Query: 71  NLQYLTLDSN----LLQGSLPDLPPHMVQLLISNNSLTGEIPS-SFCNLSSIQYLNLSNN 125
           +L +L L  N    L + SL      +  L + N     +I    F  L+ ++ L +  +
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 126 SLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGP----LP 179
            L    P+ L +   +  L L M      + +       ++  L L    L+      L 
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 180 P----SLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSG 224
                SLI     + + + + +L   + + L   + L  L+   N L  
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.3 bits (201), Expect = 2e-17
 Identities = 60/294 (20%), Positives = 104/294 (35%), Gaps = 46/294 (15%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLDS 79
           ++ LDLS N+I   I +         LQ L+L+ N + +I       L   +L++L L  
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQ-RCVNLQALVLTSNGINTIEEDSFSSLG--SLEHLDLSY 109

Query: 80  NLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL--GN 137
           N L  +L                      S F  LSS+ +LNL  N         L    
Sbjct: 110 NYLS-NLS--------------------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 138 STLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNN 196
           + L+ L +G  +    I + +  G   L  L +  + L+   P SL +  N+  L +   
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208

Query: 197 NLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKK 256
                +   +  ++ +  L++ +  L       L+      L  +    +  +       
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES--- 265

Query: 257 LCFGPLPPSLVNCQYLEVLDVGNNQI----DDTFLYWLDVLLQLQVLILRSNRF 306
                +   L     L  L+   NQ+    D  F    D L  LQ + L +N +
Sbjct: 266 --LFQVMKLLNQISGLLELEFSRNQLKSVPDGIF----DRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 42/249 (16%), Positives = 80/249 (32%), Gaps = 38/249 (15%)

Query: 87  PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN---SLSGQIPQCLGNSTLETL 143
             L   +  L +SNN +T    S      ++Q L L++N   ++       LG+  LE L
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS--LEHL 105

Query: 144 DLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPS---------------------- 181
           DL  N              +LT L L GN  +     S                      
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 182 ----LINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST-LE 236
                     L+ L++  ++L    P+ L +   +S L +        +   +  ++ +E
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225

Query: 237 ILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQL 296
            L++R           +           SL+       + + +  +    +  L+ +  L
Sbjct: 226 CLELRDTDLDTFHFSELSTG-----ETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGL 279

Query: 297 QVLILRSNR 305
             L    N+
Sbjct: 280 LELEFSRNQ 288

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 65/306 (21%), Positives = 104/306 (33%), Gaps = 36/306 (11%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW 69
            +I++   I      L  L  + N I     S         L +L    N LT++D  P 
Sbjct: 52  SSITDMTGI-EKLTGLTKLICTSNNITTLDLS-----QNTNLTYLACDSNKLTNLDVTPL 105

Query: 70  KNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
             L YL  D+N L        P +  L  + N+LT EI  S  + + +  L+   N    
Sbjct: 106 TKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLT-EIDVS--HNTQLTELDCHLNKKI- 161

Query: 130 QIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQ 189
                   + L TLD   N     +  +  K   L  L    N++       L   + L 
Sbjct: 162 TKLDVTPQTQLTTLDCSFNKIT-ELDVSQNK--LLNRLNCDTNNITK---LDLNQNIQLT 215

Query: 190 FLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSL 249
           FLD  +N L+  I   +   T+L++ D   N L+      L+   L  L          +
Sbjct: 216 FLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSK--LTTLHCIQTDLL-EI 269

Query: 250 PQNICKKLCFGPL-------PPSLVNCQYLEVLDVGNNQIDDTFLYWLDV--LLQLQVLI 300
                 +L +             + +   L +LD     I +     LD+    +L  L 
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITE-----LDLSQNPKLVYLY 324

Query: 301 LRSNRF 306
           L +   
Sbjct: 325 LNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 59/292 (20%), Positives = 91/292 (31%), Gaps = 34/292 (11%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQ 83
           +L +L+   N++     S         L +L  ++N LT ID      L  L    N   
Sbjct: 107 KLTYLNCDTNKLTKLDVSQN-----PLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKI 161

Query: 84  GSLPDLP-PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLET 142
             L   P   +  L  S N +T            +  LN   N+++ ++     N  L  
Sbjct: 162 TKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLDLN-QNIQLTF 216

Query: 143 LDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPI 202
           LD   N     I  T      LT    S N L   L  S      L  L     +L   I
Sbjct: 217 LDCSSNKLT-EIDVTPLT--QLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLE-I 269

Query: 203 PECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKL----- 257
              L ++T+L +           +     N+ L +LD +    +  L  +   KL     
Sbjct: 270 D--LTHNTQLIYFQAEGCRKIKELDVT-HNTQLYLLDCQAAGIT-ELDLSQNPKLVYLYL 325

Query: 258 ---CFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
                  L  S  +   L+ L   N  I D     +  +  L        + 
Sbjct: 326 NNTELTELDVS--HNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 50/261 (19%), Positives = 82/261 (31%), Gaps = 29/261 (11%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHT-LQFLILSQNVLTSIDHLPWKNLQYLTLDSNLL 82
           QL  LD S N+I         D+  +  L  L    N +T +D      L +L   SN L
Sbjct: 171 QLTTLDCSFNKITE------LDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKL 224

Query: 83  QGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLET 142
                     +     S N LT E+  S   LS +  L+     L  +I     N+ L  
Sbjct: 225 TEIDVTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EID-LTHNTQLIY 279

Query: 143 LDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPI 202
                      +  T+     L  L      +       L     L +L + N  L+  +
Sbjct: 280 FQAEGCRKIKELDVTHNT--QLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTE-L 333

Query: 203 PECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPL 262
              + ++T+L  L   N  +            L        +   ++P+           
Sbjct: 334 D--VSHNTKLKSLSCVNAHIQD-FSSVGKIPALNNNFEAEGQTI-TMPKETLTNN----- 384

Query: 263 PPSLVNCQYLEVLDVGNNQID 283
             SL      ++LD   N ++
Sbjct: 385 --SLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.8 bits (166), Expect = 8e-13
 Identities = 42/261 (16%), Positives = 83/261 (31%), Gaps = 41/261 (15%)

Query: 50  TLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLP--PHMVQLLISNNSLTGEI 107
           +            +I       L  L   ++ +   +  +     + +L+ ++N++T  +
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNNIT-TL 79

Query: 108 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSL 167
                  +++ YL   +N L+  +      + L  L+   N     +  +      LT L
Sbjct: 80  D--LSQNTNLTYLACDSNKLT-NLD-VTPLTKLTYLNCDTNKLT-KLDVSQNP--LLTYL 132

Query: 168 RLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIP 227
             + N L       + +   L  LD   N     +   +   T+L+ LD   N ++    
Sbjct: 133 NCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDV 187

Query: 228 ECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL 287
                  L  L+   N  +  L                L     L  LD  +N++ +   
Sbjct: 188 SQNKL--LNRLNCDTNNIT-KLD---------------LNQNIQLTFLDCSSNKLTE--- 226

Query: 288 YWLDV--LLQLQVLILRSNRF 306
             +DV  L QL       N  
Sbjct: 227 --IDVTPLTQLTYFDCSVNPL 245

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.9 bits (143), Expect = 7e-10
 Identities = 45/238 (18%), Positives = 80/238 (33%), Gaps = 37/238 (15%)

Query: 70  KNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
            +      +         +    +  L   N+S+T    +    L+ +  L  ++N+++ 
Sbjct: 21  ASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT- 77

Query: 130 QIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQ 189
            +     N+ L  L    N    ++  T      LT L    N L   L  S      L 
Sbjct: 78  TLD-LSQNTNLTYLACDSNKLT-NLDVTPLT--KLTYLNCDTNKLT-KLDVS--QNPLLT 130

Query: 190 FLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSL 249
           +L+   N L+  I   + ++T+L+ LD   N       +    + L  LD   NK +   
Sbjct: 131 YLNCARNTLT-EID--VSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKITEL- 185

Query: 250 PQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDV--LLQLQVLILRSNR 305
                           +   + L  L+   N I       LD+   +QL  L   SN+
Sbjct: 186 ---------------DVSQNKLLNRLNCDTNNITK-----LDLNQNIQLTFLDCSSNK 223

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.7 bits (201), Expect = 4e-17
 Identities = 44/257 (17%), Positives = 91/257 (35%), Gaps = 29/257 (11%)

Query: 51  LQFLILSQNVLTSIDHLP-WKNLQYLTLDSNLLQG--SLPDLPPHMVQLLISNNSLTGEI 107
           +   I     +  I     +       L    +    +  +L   + Q++ +N+ +   +
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELN-SIDQIIANNSDIK-SV 58

Query: 108 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSL 167
                 L ++  L L+ N L+  I        L  L L  N  +      + K   L SL
Sbjct: 59  -QGIQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKIKDLSSLKDLK--KLKSL 114

Query: 168 RLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIP 227
            L  N +   +   L++   L+ L +GNN ++      L   T+L  L + +N +S  I 
Sbjct: 115 SLEHNGISD-ING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISD-IV 169

Query: 228 ECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL 287
                + L+ L +  N  S     ++           +L   + L+VL++ + +  +  +
Sbjct: 170 PLAGLTKLQNLYLSKNHIS-----DL----------RALAGLKNLDVLELFSQECLNKPI 214

Query: 288 YWLDVLLQLQVLILRSN 304
                L+    +     
Sbjct: 215 NHQSNLVVPNTVKNTDG 231

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.3 bits (200), Expect = 4e-17
 Identities = 45/271 (16%), Positives = 93/271 (34%), Gaps = 22/271 (8%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW-KNLQYLTLDSNLL 82
           +    +L K  +   +        ++++  +I + + + S+  + +  N+  L L+ N L
Sbjct: 22  ETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 77

Query: 83  QGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTL 140
              +  L    ++  L +  N +  ++ SS  +L  ++ L+L +N +S  I   +    L
Sbjct: 78  T-DIKPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DINGLVHLPQL 133

Query: 141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG 200
           E+L LG N        +      L +L L  N +   + P L     LQ L +  N++S 
Sbjct: 134 ESLYLGNNKITDITVLSRLT--KLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS- 188

Query: 201 PIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLC- 258
                L     L  L++ +           +N      +             +       
Sbjct: 189 -DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 247

Query: 259 ---FGPLPPSLVNCQYLEVLDVGNNQIDDTF 286
                 LP       ++    V   +    F
Sbjct: 248 PNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.2 bits (153), Expect = 4e-11
 Identities = 43/243 (17%), Positives = 76/243 (31%), Gaps = 41/243 (16%)

Query: 19  LRTQHQLEWLDLSKNQIRGRIPSWMWDI----GVHTLQFLILSQNVLTSIDHLP-WKNLQ 73
           L     L WL L +N+I+        D+     +  L+ L L  N ++ I+ L     L+
Sbjct: 83  LTNLKNLGWLFLDENKIK--------DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 134

Query: 74  YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ 133
            L L +N +                          +    L+ +  L+L +N +S  I  
Sbjct: 135 SLYLGNNKI-----------------------TDITVLSRLTKLDTLSLEDNQIS-DIVP 170

Query: 134 CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDV 193
             G + L+ L L  N+          K  NL  L L              N V    +  
Sbjct: 171 LAGLTKLQNLYLSKNHISDLRALAGLK--NLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

Query: 194 GNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNI 253
            + +L    PE + +       +V  +                 +     +F G + Q +
Sbjct: 229 TDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286

Query: 254 CKK 256
            + 
Sbjct: 287 KEV 289

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 80.5 bits (199), Expect = 4e-17
 Identities = 44/316 (13%), Positives = 94/316 (29%), Gaps = 72/316 (22%)

Query: 17  DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGV----------HTLQFLILSQNVLTSIDH 66
            +L     ++ + LS N I                         L+    S      +  
Sbjct: 26  AVLLEDDSVKEIVLSGNTIG--------TEAARWLSENIASKKDLEIAEFSDIFTGRVKD 77

Query: 67  LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNL----SSIQYLNL 122
              + L+ L      L        P +  + +S+N+          +     + +++L L
Sbjct: 78  EIPEALRLL---LQALLKC-----PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 129

Query: 123 SNNSLS--------------GQIPQCLGNSTLETLDLGMNNFQG----SIPQTNAKGCNL 164
            NN L                   +      L ++  G N  +        +T      L
Sbjct: 130 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189

Query: 165 TSLRLSGNHL-----EGPLPPSLINCVNLQFLDVGNNNLSGP----IPECLGNSTRLSFL 215
            ++++  N +     E  L   L  C  L+ LD+ +N  +      +   L +   L  L
Sbjct: 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249

Query: 216 DVGNNSLSGP----IPECLA---NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVN 268
            + +  LS      + +  +   N  L+ L ++ N+      + +   +           
Sbjct: 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID--------EK 301

Query: 269 CQYLEVLDVGNNQIDD 284
              L  L++  N+  +
Sbjct: 302 MPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.5 bits (160), Expect = 4e-12
 Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 51/233 (21%)

Query: 116 SIQYLNLSNNSLSGQIPQCLG-----NSTLETLDLGMNNF--QG--SIPQTNAKGCNLTS 166
           SI+  +L  ++++ +  + +      + +++ + L  N    +    + +  A   +L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 167 LRLSGNHL-----EGP-----LPPSLINCVNLQFLDVGNNNLSG----PIPECLGNSTRL 212
              S         E P     L  +L+ C  L  + + +N        P+ + L   T L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 213 SFLDVGNNSLS--------------GPIPECLANSTLEILDMRMNKFSGSLPQNICKKLC 258
             L + NN L                   +      L  +    N+      +   K   
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK--- 181

Query: 259 FGPLPPSLVNCQYLEVLDVGNNQI-DDTFLYWLDVLLQ----LQVLILRSNRF 306
                 +  + + L  + +  N I  +   + L   L     L+VL L+ N F
Sbjct: 182 ------TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 29/199 (14%), Positives = 68/199 (34%), Gaps = 27/199 (13%)

Query: 135 LGNSTLETLDLGMNNFQG----SIPQTNAKGCNLTSLRLSGNHL--EG--PLPPSLINCV 186
           +   ++E   L ++        S+     +  ++  + LSGN +  E    L  ++ +  
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 187 NLQFLDVGNNNLSGPIPEC----------LGNSTRLSFLDVGNNSLSG----PIPECLA- 231
           +L+  +  +        E           L    +L  + + +N+       P+ + L+ 
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 232 NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLD 291
           ++ LE L +  N         I + L    +     N   L  +  G N++++  +    
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180

Query: 292 VLLQ----LQVLILRSNRF 306
              Q    L  + +  N  
Sbjct: 181 KTFQSHRLLHTVKMVQNGI 199

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.6 bits (199), Expect = 6e-17
 Identities = 60/309 (19%), Positives = 108/309 (34%), Gaps = 56/309 (18%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLD 78
            L++L + +      I +  +  G+ +L  L L  N    +     + L   NL+ LTL 
Sbjct: 55  DLQFLKVEQQTPGLVIRNNTFR-GLSSLIILKLDYNQFLQLETGAFNGLA--NLEVLTLT 111

Query: 79  SNLLQ------GSLPDLPPHMVQLLISNNSLTGEIPSS-FCNLSSIQYLNLSNN---SLS 128
              L            L   +  L++ +N++    P+S F N+     L+L+ N   S+ 
Sbjct: 112 QCNLDGAVLSGNFFKPL-TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170

Query: 129 GQIPQCLGNSTLETLDLGMNNFQ-------GSIPQTNAKGC-NLTSLRLSGNHLEGPLPP 180
            +            L L     Q       G     N     ++T+L LSGN  +  +  
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 181 SLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDM 240
              + +    +     + S  +    G++   +F D  N +  G     L  S ++  D+
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHT---NFKDPDNFTFKG-----LEASGVKTCDL 282

Query: 241 RMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI----DDTFLYWLDVLLQL 296
             +K   +L +++                  LE L +  N+I    D+ F      L  L
Sbjct: 283 SKSKIF-ALLKSVFSHF------------TDLEQLTLAQNEINKIDDNAF----WGLTHL 325

Query: 297 QVLILRSNR 305
             L L  N 
Sbjct: 326 LKLNLSQNF 334

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 79.4 bits (196), Expect = 1e-16
 Identities = 48/233 (20%), Positives = 86/233 (36%), Gaps = 20/233 (8%)

Query: 85  SLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ--CLGNSTLET 142
            +P+LP H+  + +S NS+     +SF  L  +Q+L +   +    I      G S+L  
Sbjct: 24  QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83

Query: 143 LDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPP--SLINCVNLQFLDVGNNNLS 199
           L L  N F   +      G  NL  L L+  +L+G +          +L+ L + +NN+ 
Sbjct: 84  LKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 200 GPIPECL-GNSTRLSFLDVGNNSLSGPIPE----CLANSTLEILDMRMNKFSGSLPQNIC 254
              P     N  R   LD+  N +   I E            +L +        + +   
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHFTLLRLSSITLQ-DMNEYWL 200

Query: 255 KKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT---FLYWLDVLLQLQVLILRSN 304
                G    +      +  LD+  N   ++     +      ++Q LIL ++
Sbjct: 201 GWEKCG----NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.5 bits (191), Expect = 7e-16
 Identities = 63/322 (19%), Positives = 107/322 (33%), Gaps = 57/322 (17%)

Query: 24  QLEWLDLSKNQIRG-RIPSWMWDIGVHTLQFLILSQNVLTSIDH----LPWKNLQYLTLD 78
            LE L L++  + G  +    +   + +L+ L+L  N +  I      L  +    L L 
Sbjct: 104 NLEVLTLTQCNLDGAVLSGNFFK-PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162

Query: 79  SNLLQ----GSLPDLPPHMVQLL---------ISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
            N ++      L +       LL         ++   L  E   +    +SI  L+LS N
Sbjct: 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222

Query: 126 SLSGQIPQ--------------CLGNSTLETLDLGMNNFQGSIPQT--NAKGCNLTSLRL 169
                + +               L NS       G  NF+     T    +   + +  L
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 170 SGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPEC 229
           S + +   L     +  +L+ L +  N ++          T L  L++  N L       
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342

Query: 230 LANST-LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI----DD 284
             N   LE+LD+  N    +L       L              L+ L +  NQ+    D 
Sbjct: 343 FENLDKLEVLDLSYNHIR-ALGDQSFLGL------------PNLKELALDTNQLKSVPDG 389

Query: 285 TFLYWLDVLLQLQVLILRSNRF 306
            F    D L  LQ + L +N +
Sbjct: 390 IF----DRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.6 bits (168), Expect = 4e-13
 Identities = 39/274 (14%), Positives = 90/274 (32%), Gaps = 36/274 (13%)

Query: 50  TLQFLILSQNVLTSI-----DHLPWKNLQYLTLDSNLLQGSLP----DLPPHMVQLLISN 100
            + ++ LS N +  +       L   +LQ+L ++       +          ++ L +  
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQ--DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 101 NSLTGEIPSSFCNLSSIQYLNLSNNSL-SGQIPQCL--GNSTLETLDLGMNNFQGSIPQT 157
           N        +F  L++++ L L+  +L    +        ++LE L L  NN +   P +
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 158 -NAKGCNLTSLRLSGNHLEGPLPPSLI---NCVNLQFLDVGNNNLSGPIPECLGNSTRLS 213
                     L L+ N ++  +    +      +   L + +  L       LG     +
Sbjct: 149 FFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 214 FLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLE 273
                             N+++  LD+  N F  S+ +     +    +   +++  Y  
Sbjct: 208 PFK---------------NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 274 VLDVGNNQIDDTFLYWLDVLL--QLQVLILRSNR 305
               G+    D   +    L    ++   L  ++
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 35/160 (21%)

Query: 21  TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYL 75
               ++  DLSK++I   +   ++      L+ L L+QN +  I       L   +L  L
Sbjct: 273 EASGVKTCDLSKSKIF-ALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFWGLT--HLLKL 328

Query: 76  TLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL 135
            L  N L  S+                        F NL  ++ L+LS N +   +    
Sbjct: 329 NLSQNFLG-SID--------------------SRMFENLDKLEVLDLSYNHIR-ALGDQS 366

Query: 136 --GNSTLETLDLGMNNFQGSIPQ-TNAKGCNLTSLRLSGN 172
             G   L+ L L  N  + S+P     +  +L  + L  N
Sbjct: 367 FLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 51/215 (23%), Positives = 83/215 (38%), Gaps = 29/215 (13%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLDS 79
            + LDLS N +R  + S+ +      LQ L LS+  + +I       L   +L  L L  
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLS--HLSTLILTG 85

Query: 80  NLLQGSLP----DLPPHMVQLLISNNSLTGEIPS-SFCNLSSIQYLNLSNNSLSGQIPQ- 133
           N +Q SL          + +L+    +L   + +    +L +++ LN+++N +       
Sbjct: 86  NPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLP 142

Query: 134 --CLGNSTLETLDLGMNNFQGSIPQ------TNAKGCNLTSLRLSGNHLEGPLPPSLINC 185
                 + LE LDL  N  Q SI              NL SL LS N +   + P     
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL-SLDLSLNPMNF-IQPGAFKE 199

Query: 186 VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNN 220
           + L+ L +  N L           T L  + +  N
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 46/222 (20%), Positives = 78/222 (35%), Gaps = 41/222 (18%)

Query: 50  TLQFLILSQNVLTSI-----DHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLT 104
           + + L LS N L  +        P   LQ L L    +Q ++                  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEIQ-TIE----------------- 68

Query: 105 GEIPSSFCNLSSIQYLNLSNN---SLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKG 161
                ++ +LS +  L L+ N   SL+      L +  L+ L     N   S+       
Sbjct: 69  ---DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS--LQKLVAVETNLA-SLENFPIGH 122

Query: 162 C-NLTSLRLSGNHL-EGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSF----L 215
              L  L ++ N +    LP    N  NL+ LD+ +N +       L    ++      L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 216 DVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKL 257
           D+  N ++   P       L+ L +  N+   S+P  I  +L
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRL 223

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 55/227 (24%), Positives = 84/227 (37%), Gaps = 27/227 (11%)

Query: 88  DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ--CLGNSTLETLDL 145
           +LP     L +S N L      SF +   +Q L+LS   +   I        S L TL L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 146 GMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLI-NCVNLQFLDVGNNNL-SGPI 202
             N  Q S+      G  +L  L     +L   L    I +   L+ L+V +N + S  +
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 203 PECLGNSTRLSFLDVGNNSLSGPIPECLAN-----STLEILDMRMNKFSGSLPQNICKKL 257
           PE   N T L  LD+ +N +       L            LD+ +N  +  +     K++
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI 200

Query: 258 CFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSN 304
                         L+ L +  NQ+        D L  LQ + L +N
Sbjct: 201 -------------RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 14/114 (12%)

Query: 23  HQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTL 77
             L+ L+++ N I+       +   +  L+ L LS N + SI       L    +  L L
Sbjct: 124 KTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH--QMPLLNL 180

Query: 78  DSNLLQGSLPDLPP------HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
             +L    +  + P       + +L +  N L       F  L+S+Q + L  N
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 23/151 (15%)

Query: 163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSL 222
           +  +L LS N L      S  +   LQ LD+    +         + + LS L +  N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 223 SGPIPECLANST-LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ 281
                   +  + L+ L       + SL          G L         L+ L+V +N 
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLA-SLENFP-----IGHLKT-------LKELNVAHNL 135

Query: 282 I-----DDTFLYWLDVLLQLQVLILRSNRFW 307
           I      + F      L  L+ L L SN+  
Sbjct: 136 IQSFKLPEYF----SNLTNLEHLDLSSNKIQ 162

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 6e-15
 Identities = 51/257 (19%), Positives = 97/257 (37%), Gaps = 29/257 (11%)

Query: 51  LQFLILSQNVLTSIDHLPW-KNLQYLTLDSNLLQGSLPDLP--PHMVQLLISNNSLTGEI 107
              +   ++ +T          +  L+     +  ++  +    +++ L + +N +T   
Sbjct: 21  AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQITD-- 77

Query: 108 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSL 167
            +   NL+ I  L LS N L   +    G  +++TLDL         P       NL  L
Sbjct: 78  LAPLKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDVTPLAGLS--NLQVL 134

Query: 168 RLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIP 227
            L  N +       L    NLQ+L +GN  +S   P  L N ++L+ L   +N +S  I 
Sbjct: 135 YLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD-IS 189

Query: 228 ECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL 287
              +   L  + ++ N+ S                   L N   L ++ + N  I +  +
Sbjct: 190 PLASLPNLIEVHLKNNQISDV---------------SPLANTSNLFIVTLTNQTITNQPV 234

Query: 288 YWLDVLLQLQVLILRSN 304
           ++ + L+   V+   S 
Sbjct: 235 FYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 23/210 (10%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDI----GVHTLQFLILSQNVLTSIDHL-PWKNLQYLTLD 78
            L  L+L  NQI         D+     +  +  L LS N L ++  +   ++++ L L 
Sbjct: 64  NLIGLELKDNQIT--------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115

Query: 79  SNLLQG--SLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG 136
           S  +     L  L  ++  L +  N +T  I S    L+++QYL++ N  +S  +     
Sbjct: 116 STQITDVTPLAGLS-NLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVS-DLTPLAN 171

Query: 137 NSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNN 196
            S L TL    N      P  +    NL  + L  N +       L N  NL  + + N 
Sbjct: 172 LSKLTTLKADDNKISDISPLASLP--NLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQ 227

Query: 197 NLSGPIPECLGNSTRLSFLDVGNNSLSGPI 226
            ++        N    + +   + +   P 
Sbjct: 228 TITNQPVFYNNNLVVPNVVKGPSGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 7e-10
 Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 25/193 (12%)

Query: 113 NLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGN 172
            L++   +    ++++  + Q      + TL                   NL  L L  N
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA-DLDGITTLSAFGTGVTTIEGVQYLN--NLIGLELKDN 73

Query: 173 HLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN 232
            +       L N   +  L++  N L       +     +  LD+ +  ++  +      
Sbjct: 74  QITD--LAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD-VTPLAGL 128

Query: 233 STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDV 292
           S L++L + +N+ +     NI            L     L+ L +GN Q+ D  L  L  
Sbjct: 129 SNLQVLYLDLNQIT-----NI----------SPLAGLTNLQYLSIGNAQVSD--LTPLAN 171

Query: 293 LLQLQVLILRSNR 305
           L +L  L    N+
Sbjct: 172 LSKLTTLKADDNK 184

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 54/309 (17%), Positives = 99/309 (32%), Gaps = 69/309 (22%)

Query: 18  ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTL 77
                H +  LDLS N +        + I    L     +             ++  L L
Sbjct: 17  FTSIPHGVTSLDLSLNNL--------YSISTVELIQAFANTP----------ASVTSLNL 58

Query: 78  DSNLLQGS--------LPDLPPHMVQLLISNNSLTGEIPSSFCNL-----SSIQYLNLSN 124
             N L           L  +P ++  L +S N L+ +              +I  L+L  
Sbjct: 59  SGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW 118

Query: 125 NSLSGQIPQCLG------NSTLETLDLGMNNFQ--------GSIPQTNAKGCNLTSLRLS 170
           N  S +             +++ +L+L  N+            +        N+ SL L 
Sbjct: 119 NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP---ANVNSLNLR 175

Query: 171 GNHL--EG--PLPPSLINC-VNLQFLDVGNNNLS----GPIPECL-GNSTRLSFLDVGNN 220
           GN+L  +    L   L +   ++  LD+  N L       +          +  L++  N
Sbjct: 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235

Query: 221 SLSGPIPECLA-----NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVL 275
            L GP  E L         L+ + +  +    ++ +  CK L       +  N Q + ++
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIV-KNMSKEQCKALG-----AAFPNIQKIILV 289

Query: 276 DVGNNQIDD 284
           D    +I  
Sbjct: 290 DKNGKEIHP 298

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 49/303 (16%), Positives = 101/303 (33%), Gaps = 36/303 (11%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHT-LQFLILSQNVLTSI-----DHLPWKNLQYLTLD 78
              L++S+N I     S   DI   + L+ LI+S N +  +            L+YL L 
Sbjct: 23  TTILNISQNYISELWTS---DILSLSKLRILIISHNRIQYLDISVFKFNQ--ELEYLDLS 77

Query: 79  SNLLQGSLPDLPPHMVQLLISNNSLTG-EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN 137
            N L         ++  L +S N+     I   F N+S +++L LS   L       + +
Sbjct: 78  HNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 138 STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN 197
             +  + L +    G          +  +  L            +++       ++  +N
Sbjct: 138 LNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 198 LSG-----------PIPECLGNSTRLSFLDVGNNSLSGP----IPECLANSTLEILDMRM 242
           +              I   L  + +LS L + N   +      I + + ++T+    +  
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 243 NKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILR 302
            K  G        +L F     S  + + L +  V ++       Y  ++   + +    
Sbjct: 257 VKLQG--------QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 303 SNR 305
            + 
Sbjct: 309 VSG 311

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.9 bits (158), Expect = 9e-12
 Identities = 38/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 13  SEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW--- 69
            +F     +   L    +  +       S++++     +     + +    +  L     
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGF-PQSYIYE-IFSNMNIKNFTVSGTRMVHMLCPSKI 323

Query: 70  KNLQYLTLDSNLLQGSLPDLPPHMVQ---LLISNNSLT--GEIPSSFCNLSSIQYLNLSN 124
               +L   +NLL  ++ +   H+ +   L++  N L    +I      + S+Q L++S 
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383

Query: 125 NSLSGQIPQ--CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL 182
           NS+S    +  C    +L +L++  N    +I +       +  L L  N ++  +P  +
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIKS-IPKQV 440

Query: 183 INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSL 222
           +    LQ L+V +N L           T L  + +  N  
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.7 bits (155), Expect = 3e-11
 Identities = 54/312 (17%), Positives = 101/312 (32%), Gaps = 55/312 (17%)

Query: 7   VKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH 66
           VKT    E  +I       +         + +    + ++   TL  +  + N    I  
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL---TLNNIETTWNSFIRILQ 242

Query: 67  LPW-KNLQYLTLDSNLLQG----SLPDLPPHMVQLL----ISNNSLTGEIPSSFCNLSSI 117
           L W   + Y ++ +  LQG       D     ++ L    + ++         +   S++
Sbjct: 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM 302

Query: 118 QYLNLSNNSLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE- 175
              N + +        C    S    LD   N    ++ +       L +L L  N L+ 
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362

Query: 176 -GPLPPSLINCVNLQFLDVGNNNL-SGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANS 233
              +        +LQ LD+  N++           +  L  L++ +N L+  I  CL   
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-P 421

Query: 234 TLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVL 293
            +++LD+  NK   S+P+ + K                                     L
Sbjct: 422 RIKVLDLHSNKIK-SIPKQVVK-------------------------------------L 443

Query: 294 LQLQVLILRSNR 305
             LQ L + SN+
Sbjct: 444 EALQELNVASNQ 455

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 4e-11
 Identities = 54/291 (18%), Positives = 93/291 (31%), Gaps = 29/291 (9%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQG 84
                L       +   ++ D+ V T+  L LS       D+     L  L       + 
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222

Query: 85  SLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST----- 139
           S   L      +  + NS            +++ Y ++SN  L GQ+     + +     
Sbjct: 223 SNLTLN----NIETTWNSFIR--ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276

Query: 140 -LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNL 198
            L    +  + F            N+     + +                  LD  NN L
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 199 SGPIPECLGNSTRLSFLDVGNNSLS--GPIPECLAN-STLEILDMRMNKFSGSLPQNICK 255
           +  + E  G+ T L  L +  N L     I E      +L+ LD+  N  S    +  C 
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

Query: 256 KLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
                         + L  L++ +N + DT    L    +++VL L SN+ 
Sbjct: 397 WT------------KSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKI 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.2 bits (151), Expect = 8e-11
 Identities = 50/221 (22%), Positives = 78/221 (35%), Gaps = 16/221 (7%)

Query: 87  PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLGNSTLETLDL 145
            DL      L IS N ++    S   +LS ++ L +S+N +          N  LE LDL
Sbjct: 17  KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76

Query: 146 GMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG-PLPPSLINCVNLQFLDVGNNNLSGPIPE 204
             N     I        NL  L LS N  +  P+     N   L+FL +   +L      
Sbjct: 77  SHNKLV-KISCHPTV--NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 205 CLGNSTRLS-FLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLP 263
            + +       L +G        PE L +       + +   +      I        L 
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEFHFI--------LD 183

Query: 264 PSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSN 304
            S+     LE+ ++     D+   Y+L +L +LQ     SN
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN 224

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 51/333 (15%), Positives = 94/333 (28%), Gaps = 62/333 (18%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQ 83
            L+ LDLS N     +P       +  L+FL LS   L     LP  +L    +   L +
Sbjct: 91  NLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149

Query: 84  --------GSLPDLPPHMVQL-LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG----- 129
                     L D     + +   +N      +  S   +++++  N+            
Sbjct: 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209

Query: 130 -----------------------------QIPQCLGNSTLETLDLGMNNFQGSIPQTNAK 160
                                        +I Q + ++T+    +     QG +   +  
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269

Query: 161 GCN-----LTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFL 215
                   L+  ++  +    P         N+   +   +        C    +    L
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329

Query: 216 DVGNNSL-SGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEV 274
           D  NN L       C   + LE L ++MN+    L +          +         L+ 
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIA---EMTTQMKS-------LQQ 378

Query: 275 LDVGNNQIDDTFLY-WLDVLLQLQVLILRSNRF 306
           LD+  N +              L  L + SN  
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 13/137 (9%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI------DHLPWKNLQYLTL 77
           +LE L L  NQ++           + +LQ L +SQN ++              +L  L +
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK--SLLSLNM 406

Query: 78  DSNLLQGSLPDLPPHMVQLL-ISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL- 135
            SN+L  ++    P  +++L + +N +   IP     L ++Q LN+++N L   +P  + 
Sbjct: 407 SSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIF 464

Query: 136 -GNSTLETLDLGMNNFQ 151
              ++L+ + L  N + 
Sbjct: 465 DRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI--DHLP 68
            +S+  ++      L+ LD+S+N +              +L  L +S N+LT      LP
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS-WTKSLLSLNMSSNILTDTIFRCLP 420

Query: 69  WKNLQYLTLDSNLLQGSLPDLPPHMVQL---LISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
              ++ L L SN ++ S+P     +  L    +++N L       F  L+S+Q + L  N
Sbjct: 421 -PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

Query: 126 SL 127
             
Sbjct: 479 PW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 14/148 (9%)

Query: 163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSL 222
             T L +S N++       +++   L+ L + +N +          +  L +LD+ +N L
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 223 SGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI 282
                    N  L+ LD+  N F  +LP        FG +         L+ L +    +
Sbjct: 82  VKISCHPTVN--LKHLDLSFNAFD-ALPICK----EFGNMS-------QLKFLGLSTTHL 127

Query: 283 DDTFLYWLDVLLQLQVLILRSNRFWGPI 310
           + + +  +  L   +VL++    +    
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKE 155

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.2 bits (172), Expect = 1e-13
 Identities = 41/236 (17%), Positives = 76/236 (32%), Gaps = 21/236 (8%)

Query: 87  PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL--GNSTLETLD 144
            DLP + ++L      L      +F     ++ + +S N +   I   +      L  + 
Sbjct: 26  SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 145 LGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIP 203
           +   N    I     +   NL  L +S   ++       I+ +    LD+ +N     I 
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 204 ECL--GNSTRLSFLDVGNNSLSGPIPECLANST--LEILDMRMNKFSGSLPQNICKKLCF 259
                G S     L +  N +   I     N T   E+     N     LP ++      
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGA-- 201

Query: 260 GPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRS 315
                         +LD+   +I     Y L+ L +L+     + +    + KL +
Sbjct: 202 ----------SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVA 247

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 52/273 (19%), Positives = 92/273 (33%), Gaps = 39/273 (14%)

Query: 50  TLQFLILSQNVLTSID-----HLPWKNLQYLTLDSNLLQGSLP-----DLPPHMVQLLIS 99
               L      L  I           +L+ + +  N +   +      +LP  + ++ I 
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFG--DLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIE 87

Query: 100 N-NSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ--CLGNSTLETLDLGMNNFQGSIPQ 156
             N+L    P +F NL ++QYL +SN  +   +P    + +     LD+  N    +I +
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 157 TNAKGC--NLTSLRLSGNHLEGPLPPSLINCVNLQFLDV-GNNNLSGPIPECLGNSTRLS 213
            +  G       L L+ N ++  +  S  N   L  L++  NNNL     +    ++   
Sbjct: 147 NSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 214 FLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYL 272
            LD+    +       L N   L            S      KKL      P+L     L
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRAR---------STYNL--KKL------PTLEKLVAL 248

Query: 273 EVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
               +        F  W   + +L  +  +S  
Sbjct: 249 MEASLTYPSHCCAFANWRRQISELHPICNKSIL 281

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.8 bits (158), Expect = 6e-12
 Identities = 41/218 (18%), Positives = 74/218 (33%), Gaps = 19/218 (8%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQ-NVLTSI-----DHLPW 69
                    LE +++S+N +   I + ++   +  L  + + + N L  I      +LP 
Sbjct: 47  KGAFSGFGDLEKIEISQNDVLEVIEADVFS-NLPKLHEIRIEKANNLLYINPEAFQNLP- 104

Query: 70  KNLQYLTLDSNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSS-IQYLNLSN 124
            NLQYL + +  ++             ++  +  N ++     +SF  LS     L L+ 
Sbjct: 105 -NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163

Query: 125 NSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLI 183
           N +          + L+ L+L  NN    +P     G      L +S   +       L 
Sbjct: 164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223

Query: 184 NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNS 221
           N   L+       NL       L     L    +   S
Sbjct: 224 NLKKLRARS--TYNLKKLPT--LEKLVALMEASLTYPS 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.2 bits (167), Expect = 3e-13
 Identities = 44/254 (17%), Positives = 89/254 (35%), Gaps = 29/254 (11%)

Query: 54  LILSQNVLTSIDHLP-WKNLQYLTLDSNLLQG--SLPDLPPHMVQLLISNNSLTGEIPSS 110
            I     +  I     +       L    +    +  +L   + Q++ +N+ +   +   
Sbjct: 7   TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN-SIDQIIANNSDIK-SV-QG 63

Query: 111 FCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLS 170
              L ++  L L+ N L+  I        L  L L  N  +      + K   L SL L 
Sbjct: 64  IQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVKDLSSLKDLK--KLKSLSLE 120

Query: 171 GNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL 230
            N +       L++   L+ L +GNN ++      L   T+L  L + +N +S  I    
Sbjct: 121 HNGIS--DINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISD-IVPLA 175

Query: 231 ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWL 290
             + L+ L +  N  S     ++           +L   + L+VL++ + +  +  +   
Sbjct: 176 GLTKLQNLYLSKNHIS-----DL----------RALAGLKNLDVLELFSQECLNKPINHQ 220

Query: 291 DVLLQLQVLILRSN 304
             L+    +     
Sbjct: 221 SNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.2 bits (167), Expect = 4e-13
 Identities = 40/212 (18%), Positives = 82/212 (38%), Gaps = 17/212 (8%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW-KNLQYLTLDSNLL 82
           +    +L K  +   +        ++++  +I + + + S+  + +  N+  L L+ N L
Sbjct: 25  ETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80

Query: 83  QGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTL 140
              +  L    ++  L +  N +  ++ SS  +L  ++ L+L +N +S  I   +    L
Sbjct: 81  T-DIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DINGLVHLPQL 136

Query: 141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG 200
           E+L LG N        +      L +L L  N +       L     LQ L +  N++S 
Sbjct: 137 ESLYLGNNKITDITVLSRLT--KLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD 192

Query: 201 PIPECLGNSTRLSFLDVGNNSLSGPIPECLAN 232
                L     L  L++ +           +N
Sbjct: 193 --LRALAGLKNLDVLELFSQECLNKPINHQSN 222

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 23/209 (11%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDI----GVHTLQFLILSQNVLTSIDHLPW-KNLQYLTLD 78
            ++ +  + + I+         +     +  +  L L+ N LT I  L   KNL +L LD
Sbjct: 47  SIDQIIANNSDIK--------SVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLD 98

Query: 79  SNLLQ--GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG 136
            N ++   SL DL   +  L + +N ++ +I +   +L  ++ L L NN ++  I     
Sbjct: 99  ENKVKDLSSLKDL-KKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DITVLSR 154

Query: 137 NSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNN 196
            + L+TL L  N     +P        L +L LS NH+       L    NL  L++ + 
Sbjct: 155 LTKLDTLSLEDNQISDIVPLAGLT--KLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQ 210

Query: 197 NLSGPIPECLGNSTRLSFLDVGNNSLSGP 225
                      N    + +   + SL  P
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 43/215 (20%), Positives = 76/215 (35%), Gaps = 49/215 (22%)

Query: 91  PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNF 150
           P   + +     +  +I  S    +     NL   S++  + Q    ++++ +    ++ 
Sbjct: 2   PLGSETITVPTPIK-QI-FSDDAFAETIKDNLKKKSVTDAVTQN-ELNSIDQIIANNSDI 58

Query: 151 QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNST 210
           +           N+T L L+GN L    P  L N  NL +L +  N +       L +  
Sbjct: 59  KSVQGIQYLP--NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK--DLSSLKDLK 112

Query: 211 RLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQ 270
           +L  L + +N +S                            +I            LV+  
Sbjct: 113 KLKSLSLEHNGIS----------------------------DI----------NGLVHLP 134

Query: 271 YLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
            LE L +GNN+I D  +  L  L +L  L L  N+
Sbjct: 135 QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ 167

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 5e-13
 Identities = 28/192 (14%), Positives = 67/192 (34%), Gaps = 23/192 (11%)

Query: 94  VQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP-QCLGNSTLETLDLGMNNFQG 152
           +  L+  +S       +   ++S+ Y+ L+N +++     +   N  ++ L +   +   
Sbjct: 26  LNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGIEYAHN--IKDLTINNIHATN 80

Query: 153 SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRL 212
             P +     NL  LR+ G  +     P+L    +L  LD+ ++     I   +    ++
Sbjct: 81  YNPISGLS--NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 213 SFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYL 272
           + +D+  N     I        L+ L+++ +                      + +   L
Sbjct: 139 NSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG---------------IEDFPKL 183

Query: 273 EVLDVGNNQIDD 284
             L   +  I  
Sbjct: 184 NQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 7e-12
 Identities = 27/180 (15%), Positives = 63/180 (35%), Gaps = 32/180 (17%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQ 83
            L ++ L+   +                         LT I++    N++ LT+++    
Sbjct: 45  SLTYITLANINV-----------------------TDLTGIEYA--HNIKDLTINNIHAT 79

Query: 84  --GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST-L 140
               +  L  ++ +L I    +T +   +   L+S+  L++S+++    I   +     +
Sbjct: 80  NYNPISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG 200
            ++DL  N     I         L SL +  + +       + +   L  L   +  + G
Sbjct: 139 NSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 46/145 (31%)

Query: 163 NLTSLRLSGN---HLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGN 219
           +LT + L+      L G     +    N++ L + N + +   P  +   + L  L +  
Sbjct: 45  SLTYITLANINVTDLTG-----IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 220 NSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGN 279
             ++      L+                                  L +   L +LD+ +
Sbjct: 98  KDVTSDKIPNLSG---------------------------------LTS---LTLLDISH 121

Query: 280 NQIDDTFLYWLDVLLQLQVLILRSN 304
           +  DD+ L  ++ L ++  + L  N
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYN 146

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.6 bits (163), Expect = 7e-13
 Identities = 40/226 (17%), Positives = 74/226 (32%), Gaps = 20/226 (8%)

Query: 85  SLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL--GNSTLET 142
            +P LPP    L +    L      +F NL +I  + +S +    Q+        S +  
Sbjct: 25  RIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTH 84

Query: 143 LDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEG-PLPPSLINCVNLQFLDVGNNNLSG 200
           +++        I     K    L  L +    L+  P    + +      L++ +N    
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 201 PIPECL--GNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLC 258
            IP     G       L + NN  +         + L+ + +  NK+   + ++    + 
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 259 FGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSN 304
                          +LDV    +  T L     L  L+ LI R+ 
Sbjct: 205 -----------SGPSLLDVSQTSV--TALP-SKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 4e-12
 Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 27/194 (13%)

Query: 50  TLQFLILSQNVLTSI-----DHLPWKNLQYLTLDSNLLQGSLPDLPPH-------MVQLL 97
           + Q L L +  L +I      +LP  N+  + +  +    +L  L  H       +  + 
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLP--NISRIYVSID---VTLQQLESHSFYNLSKVTHIE 86

Query: 98  ISNNSLTGEIPSS-FCNLSSIQYLNLSNNSLSGQIPQ---CLGNSTLETLDLGMNNFQGS 153
           I N      I       L  +++L + N  L    P             L++  N +  S
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 154 IPQTNAKGCN--LTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECL--GNS 209
           IP    +G      +L+L  N     +     N   L  + +  N     I +    G  
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 210 TRLSFLDVGNNSLS 223
           +  S LDV   S++
Sbjct: 205 SGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 31/208 (14%)

Query: 108 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC-NLTS 166
            S  C     +   ++   +  +IP    +   +TL L   + + +IP        N++ 
Sbjct: 4   SSPPCECHQEEDFRVTCKDIQ-RIPSLPPS--TQTLKLIETHLR-TIPSHAFSNLPNISR 59

Query: 167 LRLSGNHLEGPLPP-SLINCVNLQFLDVGNNN-LSGPIPECLGNSTRLSFLDVGNNSLSG 224
           + +S +     L   S  N   +  +++ N   L+   P+ L     L FL + N  L  
Sbjct: 60  IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM 119

Query: 225 PIPECLA---NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ 281
             P+           IL++  N +  S+P N  + LC                L + NN 
Sbjct: 120 -FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-----------NETLTLKLYNNG 167

Query: 282 I----DDTFLYWLDVLLQLQVLILRSNR 305
                   F        +L  + L  N+
Sbjct: 168 FTSVQGYAF-----NGTKLDAVYLNKNK 190

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 62/345 (17%), Positives = 100/345 (28%), Gaps = 72/345 (20%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLDS 79
            + L LS+N I   +        +  L+ L LS N + S+           +L+YL +  
Sbjct: 54  TKALSLSQNSIS-ELRMPDIS-FLSELRVLRLSHNRIRSLDFHVFLFNQ--DLEYLDVSH 109

Query: 80  NLLQGSLPDLP-PHMVQLLISNNSLTGEIPSS--FCNLSSIQYLNLSNN----------- 125
           N LQ ++   P   +  L +S N     +P    F NL+ + +L LS             
Sbjct: 110 NRLQ-NISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 126 --------------SLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSG 171
                          + G   + L       L L  +       Q N     L  L+LS 
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 172 NHLEG--------PLPPSLINCVNLQFLDVGNNNLSGPIPECLGN--STRLSFLDVGNNS 221
             L           L         L               +         + +L++ N +
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 222 LSGPIPEC------LANSTLEILDMRMNKFSGSLP--------------QNICKKLCFGP 261
           ++  I          A  +L I  ++   F  S                           
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 262 LPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
            PPS  +      L+   N   D+       L +LQ LIL+ N  
Sbjct: 348 CPPSPSS---FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.3 bits (159), Expect = 6e-12
 Identities = 59/330 (17%), Positives = 107/330 (32%), Gaps = 41/330 (12%)

Query: 13  SEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFL-----ILSQNVLTSIDHL 67
            +   +         LDL    I+G     +       L  +     + S  V  S++ L
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220

Query: 68  PWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPS--------SFCNLSSIQY 119
               L  + L+    Q  +  L        + N +L     +         F     ++Y
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280

Query: 120 LNLSNNSLSGQIP------QCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNH 173
           LN+ N +++ +I             +L    +    F  S     +    +    LS + 
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 174 LEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS--GPIPECLA 231
                     +  +  FL+   N  +  + +      RL  L +  N L     +     
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400

Query: 232 NST-LEILDMRMNKFSGSLPQNICKKLCFGP------------LPPSLVNC--QYLEVLD 276
           N + LE LD+ +N    SL  +   + C               L  S+  C    ++VLD
Sbjct: 401 NMSSLETLDVSLN----SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD 456

Query: 277 VGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306
           + NN+I  +    +  L  LQ L + SN+ 
Sbjct: 457 LHNNRI-MSIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 43/201 (21%), Positives = 72/201 (35%), Gaps = 8/201 (3%)

Query: 48  VHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEI 107
           V +  F+     ++ S+     +    +   +  L     DLPP    L +S NS++   
Sbjct: 9   VGSFHFVCALALIVGSMTPFSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELR 68

Query: 108 PSSFCNLSSIQYLNLSNNSLSGQIPQ--CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLT 165
                 LS ++ L LS+N +   +     L N  LE LD+  N  Q +I        +L 
Sbjct: 69  MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMA--SLR 124

Query: 166 SLRLSGNHLEG-PLPPSLINCVNLQFLDVGNNNL-SGPIPECLGNSTRLSFLDVGNNSLS 223
            L LS N  +  P+     N   L FL +         +            LD+ +  + 
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK 184

Query: 224 GPIPECLANSTLEILDMRMNK 244
           G   E L      +L +  + 
Sbjct: 185 GGETESLQIPNTTVLHLVFHP 205

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 13/137 (9%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW-------KNLQYLT 76
           +L+ L L +N ++      +  +    +  L      L S++   +       +++  L 
Sbjct: 378 RLQTLILQRNGLK-NFFK-VALM-TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434

Query: 77  LDSNLLQGSLPD-LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL 135
           L SN+L GS+   LPP +  L + NN +   IP    +L ++Q LN+++N L        
Sbjct: 435 LSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVF 493

Query: 136 GN-STLETLDLGMNNFQ 151
              ++L+ + L  N + 
Sbjct: 494 DRLTSLQYIWLHDNPWD 510

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 3e-12
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 20/165 (12%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLDS 79
              LDLS N +  R+ +      +  L  L+LS N L  I       +P  NL+YL L S
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP--NLRYLDLSS 97

Query: 80  NLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL 135
           N L         DL   +  LL+ NN +     ++F +++ +Q L LS N +S    + +
Sbjct: 98  NHLHTLDEFLFSDL-QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 136 GN----STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG 176
            +      L  LDL  N  +  +P T+ +   L +   +G +L  
Sbjct: 157 KDGNKLPKLMLLDLSSNKLK-KLPLTDLQ--KLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 22/144 (15%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLD 78
            L  L LS N +   I S  +   V  L++L LS N L ++       L    L+ L L 
Sbjct: 65  NLHSLLLSHNHLN-FISSEAFV-PVPNLRYLDLSSNHLHTLDEFLFSDLQ--ALEVLLLY 120

Query: 79  SNLLQ----GSLPDLPPHMVQLLISNNSLTGEIP----SSFCNLSSIQYLNLSNN---SL 127
           +N +      +  D+   + +L +S N ++   P         L  +  L+LS+N    L
Sbjct: 121 NNHIVVVDRNAFEDM-AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

Query: 128 SGQIPQCLGNSTLETLDLGMNNFQ 151
                Q L       L L  N  +
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 44/212 (20%)

Query: 87  PDLPPHMVQLLISNNSLTGEIPS--SFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLD 144
             LP +   L +S+N+L+  + +  +   L+++  L LS+N L+  I     +     + 
Sbjct: 35  QSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FIS----SEAFVPVP 88

Query: 145 LGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPP-SLINCVNLQFLDVGNNNLSGPIP 203
                             NL  L LS NHL   L      +   L+ L + NN++     
Sbjct: 89  ------------------NLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDR 129

Query: 204 ECLGNSTRLSFLDVGNNSLSGPIPECLAN----STLEILDMRMNKFSGSLPQNICKKLCF 259
               +  +L  L +  N +S    E + +      L +LD+  NK    LP         
Sbjct: 130 NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLT-----DL 183

Query: 260 GPLPPSLVNCQYLEVLDVGNNQID-DTFLYWL 290
             LP  +        L + NN ++ D  LY L
Sbjct: 184 QKLPAWV-----KNGLYLHNNPLECDCKLYQL 210

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 18/132 (13%)

Query: 10  CNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI---- 64
            +++    +       L +LDLS N +   +  +++   +  L+ L+L  N +  +    
Sbjct: 74  NHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFS-DLQALEVLLLYNNHIVVVDRNA 131

Query: 65  -DHLPWKNLQYLTLDSNLLQ----GSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSI 117
            + +    LQ L L  N +       + D    P ++ L +S+N L     +    L + 
Sbjct: 132 FEDMA--QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189

Query: 118 --QYLNLSNNSL 127
               L L NN L
Sbjct: 190 VKNGLYLHNNPL 201

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 8/186 (4%)

Query: 71  NLQYLTLDSNLLQGSLP-DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
           +   +  D   L  +LP DLP     L +S N L     ++    + +  LNL    L+ 
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT- 68

Query: 130 QIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI-NCVNL 188
           ++        L TLDL  N  Q S+P        LT L +S N L   LP   +     L
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGEL 126

Query: 189 QFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST-LEILDMRMNKFSG 247
           Q L +  N L    P  L  + +L  L + NN+L+      L     L+ L ++ N    
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185

Query: 248 SLPQNI 253
           ++P+  
Sbjct: 186 TIPKGF 191

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 19/167 (11%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI----DHLPWKN 71
              L    +L  L+L + ++  ++     D  +  L  L LS N L S+      LP   
Sbjct: 48  LATLMPYTRLTQLNLDRAELT-KLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTLP--A 101

Query: 72  LQYLTLDSNLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127
           L  L +  N L  SLP         + +L +  N L    P        ++ L+L+NN+L
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

Query: 128 SGQIPQCL--GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGN 172
           + ++P  L  G   L+TL L  N+   +IP+       L    L GN
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 15/123 (12%)

Query: 12  ISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DH 66
           +   P + +T   L  LD+S N++   +P      G+  LQ L L  N L ++       
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALR-GLGELQELYLKGNELKTLPPGLLTP 146

Query: 67  LPWKNLQYLTLDSNLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNL 122
            P   L+ L+L +N L   LP    +   ++  LL+  NSL   IP  F     + +  L
Sbjct: 147 TP--KLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFL 202

Query: 123 SNN 125
             N
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 35/148 (23%), Positives = 52/148 (35%), Gaps = 26/148 (17%)

Query: 162 CNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNS 221
            +   +     +L   LPP L    +   L +  N L       L   TRL+ L++    
Sbjct: 10  ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 222 LSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ 281
           L+  +        L  LD+  N+   SLP           L  +L     L VLDV  N+
Sbjct: 67  LTK-LQVDGTLPVLGTLDLSHNQLQ-SLP----------LLGQTLPA---LTVLDVSFNR 111

Query: 282 I----DDTFLYWLDVLLQLQVLILRSNR 305
           +              L +LQ L L+ N 
Sbjct: 112 LTSLPLGAL----RGLGELQELYLKGNE 135

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 35/220 (15%)

Query: 92  HMVQLLISNNSLTGEIPSSFC-----NLSSIQYLNLSNNSLSGQIPQCL--GNSTLETLD 144
            + QL ++   +T    +           ++  +NL++  L     + L         L 
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132

Query: 145 LGMNNFQ-------GSIPQTNAKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDV 193
           L +N+           +   +   C +T+LRLS N L       L   L    ++  L +
Sbjct: 133 LQLNSLGPEACKDLRDLLLHDQ--CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190

Query: 194 GNNNLSGP----IPECLGNSTRLSFLDVGNNSLSGPIPECLA-----NSTLEILDMRMNK 244
            +  L       +   L  + +L  L+V  N         LA     + +LE+L +  N+
Sbjct: 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250

Query: 245 FSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD 284
            S    Q +           +      + V       + +
Sbjct: 251 LSSEGRQVLRDLG------GAAEGGARVVVSLTEGTAVSE 284

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 51/228 (22%)

Query: 114 LSSIQYLNLSNNSLSGQIPQCLG------NSTLETLDLGMNNFQGSIPQTNAKGC----- 162
           LSS++ LNL+   ++      +          L+ ++L            +  G      
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-------DPAGLRTLLP 123

Query: 163 ---NLTSLRLSGNHLEGP----LPPSLI-NCVNLQFLDVGNNNLSGP----IPECLGNST 210
                  L L  N L       L   L+ +   +  L + NN L+      + E L  +T
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183

Query: 211 RLSFLDVGNNSLSGPIPECLA-----NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPS 265
            ++ L + +  L     E LA     N  L+ L++  N    +        L        
Sbjct: 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT----AALALARA----- 234

Query: 266 LVNCQYLEVLDVGNNQIDDTFLYWL-------DVLLQLQVLILRSNRF 306
                 LE+L +  N++       L       +   ++ V +      
Sbjct: 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 43/273 (15%), Positives = 78/273 (28%), Gaps = 70/273 (25%)

Query: 22  QHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNL 81
           +H L+ ++L+  Q+           G+ TL    L                + L L  N 
Sbjct: 100 RHALDEVNLASCQL--------DPAGLRTL----LPVF----------LRARKLGLQLNS 137

Query: 82  LQGS--------LPDLPPHMVQLLISNNSLTGE----IPSSFCNLSSIQYLNLSNNSLSG 129
           L           L      +  L +SNN LT      +       +S+ +L+L +  L  
Sbjct: 138 LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD 197

Query: 130 QIPQCLG-----NSTLETLDLGMNNFQGSIPQTNAKG----CNLTSLRLSGNHLE----- 175
           +  + L      N  L+ L++  N    +     A+      +L  L L  N L      
Sbjct: 198 EGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQ 257

Query: 176 --GPLPPSLINCVNLQFLDVGNNNLS----GPIPECLGNST-----------RLSFLDVG 218
               L  +      +         +S      + E   N              L   D+ 
Sbjct: 258 VLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLE 317

Query: 219 NNSLSGPIPECLA-----NSTLEILDMRMNKFS 246
           ++  +   P   A        +  L  ++    
Sbjct: 318 DSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.6 bits (154), Expect = 2e-11
 Identities = 35/275 (12%), Positives = 70/275 (25%), Gaps = 16/275 (5%)

Query: 22  QHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNL 81
              L    L+    +                 L+  +      D    + L    L    
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK 360

Query: 82  LQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLE 141
                 +L        +   +    +       +    L            + +      
Sbjct: 361 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420

Query: 142 TLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGP 201
            LD   + F         +  ++  L L+   L   +   L   + +  LD+ +N L   
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA- 477

Query: 202 IPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGP 261
           +P  L     L  L   +N+L   +        L+ L +  N+                 
Sbjct: 478 LPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQ-QSAA---------- 525

Query: 262 LPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQL 296
               LV+C  L +L++  N +         +   L
Sbjct: 526 -IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 10/133 (7%)

Query: 1   KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNV 60
                 +++  + E   +      +  L L+   +   +        +  +  L LS N 
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHLEQ---LLLVTHLDLSHNR 474

Query: 61  LTSIDHL--PWKNLQYLTLDSNLLQGSLPDLP--PHMVQLLISNNSLTG-EIPSSFCNLS 115
           L ++       + L+ L    N L+ ++  +   P + +LL+ NN L          +  
Sbjct: 475 LRALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCP 533

Query: 116 SIQYLNLSNNSLS 128
            +  LNL  NSL 
Sbjct: 534 RLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 7e-06
 Identities = 34/246 (13%), Positives = 75/246 (30%), Gaps = 22/246 (8%)

Query: 62  TSIDHLPWKNLQYLTLDSNLLQGSLPDLPP--HMVQLLISNNSLTGEIPSSFCNLSSIQY 119
               H+   +L   +L+  L Q +   +       +  +                  +  
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFR 353

Query: 120 LNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLP 179
             LS    +    +      L+ L+        +I         L   + +  +      
Sbjct: 354 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL-- 411

Query: 180 PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILD 239
              ++ +   +LD   +               +  L + +  L+  +        +  LD
Sbjct: 412 -KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCHLEQLLLVTHLD 469

Query: 240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVL 299
           +  N+                 LPP+L   + LEVL   +N +++  +  +  L +LQ L
Sbjct: 470 LSHNRLRA--------------LPPALAALRCLEVLQASDNALEN--VDGVANLPRLQEL 513

Query: 300 ILRSNR 305
           +L +NR
Sbjct: 514 LLCNNR 519

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 19/161 (11%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLD 78
           +L  L L+ N+++  +P+ ++   +  L+ L ++ N L ++     D L   NL  L LD
Sbjct: 62  KLRLLYLNDNKLQT-LPAGIFK-ELKNLETLWVTDNKLQALPIGVFDQLV--NLAELRLD 117

Query: 79  SNLLQGSLP----DLPPHMVQLLISNNSLTGEIPS-SFCNLSSIQYLNLSNNSLSGQIPQ 133
            N L+ SLP    D    +  L +  N L   +P   F  L+S++ L L NN L  ++P+
Sbjct: 118 RNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPE 174

Query: 134 CL--GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGN 172
                 + L+TL L  N  +            L  L+L  N
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 47/222 (21%)

Query: 89  LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN---SLSGQIPQCLGNSTLETLDL 145
           +P    +L + +N L+     +F  L+ ++ L L++N   +L   I + L N  LETL +
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN--LETLWV 92

Query: 146 GMNNFQGSIPQTNAKG-CNLTSLRLSGNHLEGPLPPSL-INCVNLQFLDVGNNNLSGPIP 203
             N  Q ++P        NL  LRL  N L+  LPP +  +   L +L +G N L   +P
Sbjct: 93  TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQS-LP 149

Query: 204 ECLGNS-TRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPL 262
           + + +  T L  L + NN L                          +P+    KL     
Sbjct: 150 KGVFDKLTSLKELRLYNNQLK------------------------RVPEGAFDKL----- 180

Query: 263 PPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSN 304
                    L+ L + NNQ+        D L +L++L L+ N
Sbjct: 181 -------TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 14/111 (12%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLD 78
           QL  ++ S N+I   I    ++ G   +  ++L+ N L ++       L   +L+ L L 
Sbjct: 58  QLRKINFSNNKIT-DIEEGAFE-GASGVNEILLTSNRLENVQHKMFKGLE--SLKTLMLR 113

Query: 79  SNLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
           SN +   +          +  L + +N +T   P +F  L S+  LNL  N
Sbjct: 114 SNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 13/110 (11%)

Query: 28  LDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLDSNLL 82
           L L+ N+    + +      +  L+ +  S N +T I     +      +  + L SN L
Sbjct: 37  LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS--GVNEILLTSNRL 93

Query: 83  QGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 128
           + ++          +  L++ +N +T     SF  LSS++ L+L +N ++
Sbjct: 94  E-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)

Query: 61  LTSI-DHLPWKNLQYLTLDSNLLQGSLPDLP----PHMVQLLISNNSLTGEIPSSFCNLS 115
           L  I +H+P +    L L++N              P + ++  SNN +T     +F   S
Sbjct: 23  LNKIPEHIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81

Query: 116 SIQYLNLSNNSLSGQIPQCL--GNSTLETLDLGMNNFQGSIPQ-TNAKGCNLTSLRLSGN 172
            +  + L++N L   +   +  G  +L+TL L  N     +   +     ++  L L  N
Sbjct: 82  GVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDN 139

Query: 173 HLEGPLPPSLINCVNLQFLDVGNN 196
            +    P +     +L  L++  N
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLLAN 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 20/235 (8%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDI----GVHTLQFLILSQNVLTSIDHL-PWKNLQYLTLD 78
            ++  +   + I+         +        L+ L LS N ++ +  L     L+ L+++
Sbjct: 42  GVQNFNGDNSNIQ--------SLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN 93

Query: 79  SNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNS 138
            N L+         + +L + NN L      S  +L +++ L++ NN L   I      S
Sbjct: 94  RNRLKNLNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIVMLGFLS 150

Query: 139 TLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNL 198
            LE LDL  N    +   T  K   +  + L+G                   +   +   
Sbjct: 151 KLEVLDLHGNEITNTGGLTRLK--KVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

Query: 199 SGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNI 253
             P    + N        V               S    +      F G++ Q I
Sbjct: 209 ISPY--YISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPI 261

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 40/249 (16%), Positives = 81/249 (32%), Gaps = 52/249 (20%)

Query: 54  LILSQNVLTSIDHLP-WKNLQYLTLDSNLLQ--GSLPDLPPHMVQLLISNNSLTGEIPSS 110
            I     +  +   P   N     L    +    S  +L   +      N+++   + + 
Sbjct: 2   SIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELS-GVQNFNGDNSNIQ-SL-AG 58

Query: 111 FCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLS 170
               ++++ L+LS+N +S  +      + LE L +  N  + ++         L+ L L 
Sbjct: 59  MQFFTNLKELHLSHNQIS-DLSPLKDLTKLEELSVNRNRLK-NLN--GIPSACLSRLFLD 114

Query: 171 GNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL 230
            N L      SLI+  NL+ L + NN L       LG  ++L  LD+  N ++       
Sbjct: 115 NNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT------- 163

Query: 231 ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWL 290
                                N             L   + +  +D+   +  +  + + 
Sbjct: 164 ---------------------NT----------GGLTRLKKVNWIDLTGQKCVNEPVKYQ 192

Query: 291 DVLLQLQVL 299
             L     +
Sbjct: 193 PELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 34/205 (16%), Positives = 71/205 (34%), Gaps = 44/205 (21%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDI----GVHTLQFLILSQNVLTSIDHL-PWKNLQYLTLD 78
                +L K  +         D+     +  +Q      + + S+  +  + NL+ L L 
Sbjct: 20  NAVKQNLGKQSVT--------DLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLS 71

Query: 79  SNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNS 138
            N +     DL P                     +L+ ++ L+++ N L       + ++
Sbjct: 72  HNQIS----DLSP-------------------LKDLTKLEELSVNRNRLK--NLNGIPSA 106

Query: 139 TLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNL 198
            L  L L  N  + +    + K  NL  L +  N L+      L     L+ LD+  N +
Sbjct: 107 CLSRLFLDNNELRDTDSLIHLK--NLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEI 162

Query: 199 SGPIPECLGNSTRLSFLDVGNNSLS 223
           +      L    +++++D+      
Sbjct: 163 TNTGG--LTRLKKVNWIDLTGQKCV 185

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 14/111 (12%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLD 78
           +L  +DLS NQI   +    +  G+ +L  L+L  N +T +     + L   +LQ L L+
Sbjct: 57  KLRRIDLSNNQIS-ELAPDAFQ-GLRSLNSLVLYGNKITELPKSLFEGLF--SLQLLLLN 112

Query: 79  SNLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
           +N +   L         ++  L + +N L      +F  L +IQ ++L+ N
Sbjct: 113 ANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 87  PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP----QCLGNSTLET 142
            +LP  + ++ +  N++    P +F     ++ ++LSNN +S ++     Q L +  L +
Sbjct: 28  TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS--LNS 84

Query: 143 LDLGMNNFQGSIPQTNAKG-CNLTSLRLSGNHLEGPLPPSLI-NCVNLQFLDVGNNNLSG 200
           L L  N     +P++  +G  +L  L L+ N +   L      +  NL  L + +N L  
Sbjct: 85  LVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQT 142

Query: 201 PIPECLGNSTRLSFLDVGNN 220
                      +  + +  N
Sbjct: 143 IAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 15/134 (11%)

Query: 50  TLQFLILSQNVLTSI-----DHLPWKNLQYLTLDSNLLQGSLP----DLPPHMVQLLISN 100
           T+  + L QN +  I          K L+ + L +N +   L          +  L++  
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPY--KKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 101 NSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNS--TLETLDLGMNNFQGSIPQTN 158
           N +T    S F  L S+Q L L+ N ++  +          L  L L  N  Q     T 
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 159 AKGCNLTSLRLSGN 172
           +    + ++ L+ N
Sbjct: 149 SPLRAIQTMHLAQN 162

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 14/111 (12%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLD 78
           +L  L L+ NQ+   +P  ++D  +  L  L L  N L S+     D L    L+ L L+
Sbjct: 84  ELGTLGLANNQLA-SLPLGVFD-HLTQLDKLYLGGNQLKSLPSGVFDRLT--KLKELRLN 139

Query: 79  SNLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
           +N LQ S+P    D   ++  L +S N L      +F  L  +Q + L  N
Sbjct: 140 TNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 46/161 (28%), Positives = 65/161 (40%), Gaps = 23/161 (14%)

Query: 26  EWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLDSN 80
           E LDL    +   +    +  G+  L +L L  N L ++     D L    L  L L +N
Sbjct: 38  EKLDLQSTGLA-TLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDL--TELGTLGLANN 93

Query: 81  LLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ--- 133
            L  SLP    D    + +L +  N L       F  L+ ++ L L+ N L   IP    
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF 151

Query: 134 -CLGNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGN 172
             L N  L+TL L  N  Q S+P         L ++ L GN
Sbjct: 152 DKLTN--LQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 11/134 (8%)

Query: 95  QLLISNNSLTGEIPSSFCNLSSIQYLNLSNN---SLSGQIPQCLGNSTLETLDLGMNNFQ 151
           +L + +  L     ++F  L+ + +LNL  N   +LS  +   L    L TL L  N   
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE--LGTLGLANNQLA 96

Query: 152 GSIPQ-TNAKGCNLTSLRLSGNHLEGPLPPSLI-NCVNLQFLDVGNNNLSGPIPECLGNS 209
            S+P         L  L L GN L+  LP  +      L+ L +  N L   IP    + 
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDK 153

Query: 210 -TRLSFLDVGNNSL 222
            T L  L +  N L
Sbjct: 154 LTNLQTLSLSTNQL 167

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 13/110 (11%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLD 78
            L+ L L  NQ+   +P  ++D     L  L L  N LT +     D L   +L+ L + 
Sbjct: 65  NLKELYLGSNQLG-ALPVGVFDSLT-QLTVLDLGTNQLTVLPSAVFDRLV--HLKELFMC 120

Query: 79  SNLLQGSLP---DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
            N L   LP   +   H+  L +  N L      +F  LSS+ +  L  N
Sbjct: 121 CNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 20/136 (14%)

Query: 50  TLQFLILSQNVLTSI-----DHLPWKNLQYLTLDSNLLQGSLPD-LPPHMVQ---LLISN 100
             Q L L  N +T +     D L   NL+ L L SN L  +LP  +   + Q   L +  
Sbjct: 41  NAQILYLHDNQITKLEPGVFDSL--INLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97

Query: 101 NSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST-LETLDLGMNNFQGSIPQT-- 157
           N LT    + F  L  ++ L +  N L+  +P+ +   T L  L L  N  + SIP    
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHGAF 155

Query: 158 -NAKGCNLTSLRLSGN 172
                 +LT   L GN
Sbjct: 156 DRLS--SLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 18/112 (16%)

Query: 96  LLISNNSLTGEIPSSFCNLSSIQYLNLSNN---SLSGQIPQCLGNSTLETLDLGMNNFQG 152
           L + +N +T   P  F +L +++ L L +N   +L   +   L    L  LDLG N    
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ--LTVLDLGTNQLT- 101

Query: 153 SIPQ------TNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNL 198
            +P             +L  L +  N L   LP  +    +L  L +  N L
Sbjct: 102 VLPSAVFDRLV-----HLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.5 bits (122), Expect = 2e-07
 Identities = 29/214 (13%), Positives = 72/214 (33%), Gaps = 20/214 (9%)

Query: 40  PSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLD-SNLLQGSLPDLPPHMVQLLI 98
             +  +        ++ ++      + L W ++ +   + S + Q  L  +   M  L  
Sbjct: 117 WGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNN 176

Query: 99  SNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST---LETLDL--GMNNFQGS 153
                T  +        +++ L + +  L   + + +  S    LE L L  G+ ++   
Sbjct: 177 LKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236

Query: 154 IP-------QTNAKGCNLTSLRLSGNHLEGPLPPSLINCV---NLQFLDVGNNNLSG--- 200
                     +  +  NL  L +     +  +    +       L+ +D+    L+    
Sbjct: 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296

Query: 201 -PIPECLGNSTRLSFLDVGNNSLSGPIPECLANS 233
             + + +     L F+++  N LS  + + L  S
Sbjct: 297 RLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 9e-06
 Identities = 25/210 (11%), Positives = 57/210 (27%), Gaps = 27/210 (12%)

Query: 90  PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNN 149
              +   ++ N          F      +   +S        P       L  L +   N
Sbjct: 124 CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183

Query: 150 FQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI--NCVNLQFLDV---GNNNLSGPIPE 204
                 +      NL SL +    L   +   ++  +  NL+ L +     +        
Sbjct: 184 NLSIGKKPR---PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240

Query: 205 CL------GNSTRLSFLDVGNNSLSGPIPECLANS----TLEILDMRMNKFSGSLPQNIC 254
                        L +L + +      + E    S     LE +D+     +    + + 
Sbjct: 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300

Query: 255 KKLCFGPLPPSLVNCQYLEVLDVGNNQIDD 284
                      +   ++L+ +++  N + D
Sbjct: 301 D---------HVDKIKHLKFINMKYNYLSD 321

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 30/107 (28%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLD 78
            L  L+L +NQ+   I    ++ G   +Q L L +N +  I       L    L+ L L 
Sbjct: 55  HLVKLELKRNQLT-GIEPNAFE-GASHIQELQLGENKIKEISNKMFLGLH--QLKTLNLY 110

Query: 79  SNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
            N +   +                       SF +L+S+  LNL++N
Sbjct: 111 DNQIS-CVMP--------------------GSFEHLNSLTSLNLASN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 30/119 (25%)

Query: 12  ISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DH 66
            +  P  L     L  +DLS N+I   + +  +      L  LILS N L  I     D 
Sbjct: 43  FTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQ-LLTLILSYNRLRCIPPRTFDG 100

Query: 67  LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
           L  K+L+ L+L  N +   +P+                     +F +LS++ +L +  N
Sbjct: 101 L--KSLRLLSLHGNDIS-VVPE--------------------GAFNDLSALSHLAIGAN 136

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 59  NVLTSIDHLPWKNLQYLTLDSN-----LLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCN 113
           + L  +      NL  L +++      L    L  L   +  L I  + L    P +F  
Sbjct: 22  DSLHHLPGAE--NLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHF 78

Query: 114 LSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQ 151
              +  LNLS N+L     + +   +L+ L L  N   
Sbjct: 79  TPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 5/113 (4%)

Query: 134 CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPP-SLINCVNLQFLD 192
             G+S L     G  +    +P       NLT L +        L    L     L+ L 
Sbjct: 7   PHGSSGLRCTRDGALDSLHHLPGAE----NLTELYIENQQHLQHLELRDLRGLGELRNLT 62

Query: 193 VGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKF 245
           +  + L    P+    + RLS L++  N+L     + +   +L+ L +  N  
Sbjct: 63  IVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 6/108 (5%)

Query: 94  VQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP-QCLGN-STLETLDLGMNNFQ 151
             L  + +    +         ++  L + N      +  + L     L  L +  +  +
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 152 GSIPQTNAKGC-NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNL 198
             +          L+ L LS N LE  L    +  ++LQ L +  N L
Sbjct: 70  -FVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 10/101 (9%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----D 65
              +    L     L  L +   Q    +       G+  L+ L + ++ L  +      
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVAPDAFH 77

Query: 66  HLPWKNLQYLTLDSNLLQGSLPDL--PPHMVQLLISNNSLT 104
             P   L  L L  N L+           + +L++S N L 
Sbjct: 78  FTP--RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 16/112 (14%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLD 78
            L+ L L +NQ++  +P  ++D     L +L L+ N L S+     D L   NL  L L 
Sbjct: 110 NLKELVLVENQLQ-SLPDGVFDKLT-NLTYLNLAHNQLQSLPKGVFDKLT--NLTELDLS 165

Query: 79  SNLLQGSLP----DLPPHMVQLLISNNSLTGEIPS-SFCNLSSIQYLNLSNN 125
            N LQ SLP    D    +  L +  N L   +P   F  L+S+QY+ L +N
Sbjct: 166 YNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 31/186 (16%)

Query: 28  LDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS---IDHLPWKNLQYLTLDSNLLQG 84
            +L K  +   +        ++++  +I + + + S   I +L   N++YL L  N L  
Sbjct: 24  ANLKKKSVTDAVT----QNELNSIDQIIANNSDIKSVQGIQYL--PNVRYLALGGNKLH- 76

Query: 85  SLP--DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN---SLSGQIPQCLGNST 139
            +       ++  L+++ N L       F  L++++ L L  N   SL   +   L N  
Sbjct: 77  DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN-- 134

Query: 140 LETLDLGMNNFQGSIPQ------TNAKGCNLTSLRLSGNHLEGPLPPSLIN-CVNLQFLD 192
           L  L+L  N  Q S+P+      T     NLT L LS N L+  LP  + +    L+ L 
Sbjct: 135 LTYLNLAHNQLQ-SLPKGVFDKLT-----NLTELDLSYNQLQS-LPEGVFDKLTQLKDLR 187

Query: 193 VGNNNL 198
           +  N L
Sbjct: 188 LYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 37/169 (21%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGV----HTLQFLILSQNVLTSI-----DHLPWKNLQY 74
            + +L L  N++         DI        L +LIL+ N L S+     D L   NL+ 
Sbjct: 64  NVRYLALGGNKLH--------DISALKELTNLTYLILTGNQLQSLPNGVFDKL--TNLKE 113

Query: 75  LTLDSNLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQ 130
           L L  N LQ SLP    D   ++  L +++N L       F  L+++  L+LS N L   
Sbjct: 114 LVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-S 171

Query: 131 IPQ----CLGNSTLETLDLGMNNFQGSIPQ---TNAKGCNLTSLRLSGN 172
           +P+     L    L+ L L  N  + S+P          +L  + L  N
Sbjct: 172 LPEGVFDKLTQ--LKDLRLYQNQLK-SVPDGVFDRLT--SLQYIWLHDN 215

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 14/109 (12%)

Query: 26  EWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLDSN 80
             L+L  N+++  +P  ++D  +  L  L LSQN + S+     D L    L  L L  N
Sbjct: 31  TRLELESNKLQ-SLPHGVFD-KLTQLTKLSLSQNQIQSLPDGVFDKL--TKLTILYLHEN 86

Query: 81  LLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
            LQ SLP    D    + +L +  N L       F  L+S+Q + L  N
Sbjct: 87  KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 14/111 (12%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-----DHLPWKNLQYLTLD 78
            L  L L  N+++  +P+ +++    +L +L LS N L S+     D L    L+ L L+
Sbjct: 53  SLTQLYLGGNKLQ-SLPNGVFNKLT-SLTYLNLSTNQLQSLPNGVFDKL--TQLKELALN 108

Query: 79  SNLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
           +N LQ SLP    D    +  L +  N L       F  L+S+QY+ L +N
Sbjct: 109 TNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 11/127 (8%)

Query: 28  LDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP--WKNLQYLTLDSNLLQGS 85
           + L+   I  +             + L L    +  I++L         +    N ++  
Sbjct: 2   VKLTAELIE-QAAQ---YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 86  LPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS--GQIPQCLGNSTLE 141
           L   P    +  LL++NN +          L  +  L L+NNSL   G +       +L 
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 142 TLDLGMN 148
            L +  N
Sbjct: 117 YLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 21/143 (14%)

Query: 162 CNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNS 221
                L L G  +   +            +D  +N +   + +      RL  L V NN 
Sbjct: 19  VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNR 75

Query: 222 LSGPIPECLANS--TLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGN 279
           +   I E L  +   L  L +  N        ++            L + + L  L +  
Sbjct: 76  ICR-IGEGLDQALPDLTELILTNNSLVE--LGDLDP----------LASLKSLTYLCILR 122

Query: 280 NQIDDTFLYWLDV---LLQLQVL 299
           N + +   Y L V   + Q++VL
Sbjct: 123 NPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 20/140 (14%)

Query: 167 LRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI 226
           ++L+   +E        N V  + LD+    +   I        +   +D  +N +   +
Sbjct: 2   VKLTAELIE--QAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL 57

Query: 227 PECLANST-LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD- 284
            +       L+ L +  N+    + + + +                L  L + NN + + 
Sbjct: 58  -DGFPLLRRLKTLLVNNNRIC-RIGEGLDQ------------ALPDLTELILTNNSLVEL 103

Query: 285 TFLYWLDVLLQLQVLILRSN 304
             L  L  L  L  L +  N
Sbjct: 104 GDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 26/129 (20%), Positives = 40/129 (31%), Gaps = 12/129 (9%)

Query: 120 LNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNH---LEG 176
           + L+   +  Q  Q         LDL        I    A      ++  S N    L+G
Sbjct: 2   VKLTAELIE-QAAQYTNAVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 59

Query: 177 PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP--IPECLANST 234
                      L+ L V NN +             L+ L + NNSL     +    +  +
Sbjct: 60  -----FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 235 LEILDMRMN 243
           L  L +  N
Sbjct: 115 LTYLCILRN 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 31/153 (20%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWK 70
            I +    L T    + L LS N I                         ++S+  +  +
Sbjct: 36  PIEKMDATLSTLKACKHLALSTNNIE-----------------------KISSLSGM--E 70

Query: 71  NLQYLTLDSNLLQ--GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 128
           NL+ L+L  NL++   +L  +   + +L IS N +   + S    L +++ L +SNN ++
Sbjct: 71  NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKIT 128

Query: 129 --GQIPQCLGNSTLETLDLGMNNFQGSIPQTNA 159
             G+I +      LE L L  N       + NA
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 21/143 (14%)

Query: 164 LTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS 223
              L      +E  +  +L      + L +  NN+   I   L     L  L +G N + 
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNLIK 83

Query: 224 GPIP-ECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI 282
                + +A++ LE L +  N+ +          L        +     L VL + NN+I
Sbjct: 84  KIENLDAVADT-LEELWISYNQIA---------SLS------GIEKLVNLRVLYMSNNKI 127

Query: 283 DD-TFLYWLDVLLQLQVLILRSN 304
            +   +  L  L +L+ L+L  N
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 46/199 (23%)

Query: 111 FCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLS 170
           F    S+         L G IP       +E +D  ++  +               L LS
Sbjct: 14  FEERKSVVATEAEKVELHGMIPP------IEKMDATLSTLK-----------ACKHLALS 56

Query: 171 GNH---LEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIP 227
            N+   +       L    NL+ L +G N +   I      +  L  L +  N ++  + 
Sbjct: 57  TNNIEKISS-----LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS 109

Query: 228 ECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL 287
                  L +L M  NK +      I K          L     LE L +  N + + + 
Sbjct: 110 GIEKLVNLRVLYMSNNKITN--WGEIDK----------LAALDKLEDLLLAGNPLYNDYK 157

Query: 288 -------YWLDVLLQLQVL 299
                  Y ++V+ +L  L
Sbjct: 158 ENNATSEYRIEVVKRLPNL 176

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 21/144 (14%)

Query: 162 CNLTSLRLSGNHL-EGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNN 220
             +  L L      +G +       VNL+FL + N  L       L    +L  L++  N
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSEN 81

Query: 221 SLSGPIPECLANS--TLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVG 278
            + G   + LA     L  L++  NK        +            L   + L+ LD+ 
Sbjct: 82  RIFG-GLDMLAEKLPNLTHLNLSGNKLKD--ISTLEP----------LKKLECLKSLDLF 128

Query: 279 NNQIDDTFLYWLDV---LLQLQVL 299
           N ++ +   Y   V   L QL  L
Sbjct: 129 NCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 26/128 (20%)

Query: 97  LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQ 156
           L +  S  G+I        ++++L+L N  L           ++  L             
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI----------SVSNLP------------ 68

Query: 157 TNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGP-IPECLGNSTRLSFL 215
              K   L  L LS N + G L        NL  L++  N L      E L     L  L
Sbjct: 69  ---KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

Query: 216 DVGNNSLS 223
           D+ N  ++
Sbjct: 126 DLFNCEVT 133

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 19/143 (13%)

Query: 162 CNLTSLRLSGNHL-EGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNN 220
            ++  L L  +   EG L         L+FL   N  L+      L    +L  L++ +N
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDN 74

Query: 221 SLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGN 279
            +SG +         L  L++  NK        I            L   + L+ LD+ N
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEP----------LKKLENLKSLDLFN 122

Query: 280 NQIDDTFLYWLDV---LLQLQVL 299
            ++ +   Y  +V   L QL  L
Sbjct: 123 CEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 26/125 (20%)

Query: 97  LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQ 156
           L ++ S  G++         +++L+  N  L+          ++  L             
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGLT----------SIANLP------------ 61

Query: 157 TNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGP-IPECLGNSTRLSFL 215
              K   L  L LS N + G L      C NL  L++  N +      E L     L  L
Sbjct: 62  ---KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118

Query: 216 DVGNN 220
           D+ N 
Sbjct: 119 DLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 138 STLETLDL-GMNNFQGSIPQTNAKGCNLTSLRLSGNHLE--GPLPPSLINCVNLQFLDVG 194
           S ++ L L    + +G +     +   L  L      L     LP        L+ L++ 
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELS 72

Query: 195 NNNLSGPIPECLGNSTRLSFLDVGNNSLSGP-IPECLAN-STLEILDMRMN 243
           +N +SG +         L+ L++  N +      E L     L+ LD+   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 20/131 (15%)

Query: 137 NSTLETLDLG-MNNFQGSIPQTNAKG----CNLTSLRLSGNHL--EG--PLPPSLINCVN 187
           +  LE ++L  + N      +  A+       +    + G          L   L     
Sbjct: 35  DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNT 94

Query: 188 LQFLDVGNNNLSGP----IPECLGNSTRLSFLDVGNNS--LSGPIPECLA-----NSTLE 236
           L+ L+V +N +SG     + E L ++T L  L + N S  L   +   +A     N+TL 
Sbjct: 95  LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLL 154

Query: 237 ILDMRMNKFSG 247
                  +   
Sbjct: 155 KFGYHFTQQGP 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	347
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.98
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.54
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.26
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.22
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.21
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.15
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.01
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.97
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.96
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.87
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.82
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.62
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.31
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.25
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.95
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.9
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.86
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.43
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.02

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.4e-36  Score=286.99  Aligned_cols=325  Identities=31%  Similarity=0.434  Sum_probs=232.7

Q ss_pred             ceEEEecCCCCC-CCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCC-CC--CCCC-CCcEEE
Q 040206            2 TIKTQVKTCNIS-EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-DH--LPWK-NLQYLT   76 (347)
Q Consensus         2 l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~--~~~~-~L~~L~   76 (347)
                      |++|++++|.+. .+|..+.++++|++|++++|.+.+.+|...+. .+++|++|++++|.+++. +.  ..++ +|++|+
T Consensus       296 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~  374 (768)
T 3rgz_A          296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL-KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD  374 (768)
T ss_dssp             CSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT-TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred             CCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh-cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence            556666666666 56666666777777777777666666655222 336677777777666532 22  2233 677777


Q ss_pred             ccCCCCCccCCCC-----CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcc
Q 040206           77 LDSNLLQGSLPDL-----PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNF  150 (347)
Q Consensus        77 l~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  150 (347)
                      +++|.+.+..+..     +++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+ .+++|+.|++++|.+
T Consensus       375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l  454 (768)
T 3rgz_A          375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML  454 (768)
T ss_dssp             CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc
Confidence            7777665433222     3568888888888877777888888888888888888876555544 556888888888888


Q ss_pred             ccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccc
Q 040206          151 QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL  230 (347)
Q Consensus       151 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  230 (347)
                      .+..|..+..+++|++|++++|.++...|..+..+++|+.|++++|.+.+..|.++..+++|+.|++++|.+.+..+..+
T Consensus       455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  534 (768)
T 3rgz_A          455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL  534 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred             cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence            77788888888888888888888887778888888888888888888887888888888888888888888876666554


Q ss_pred             cc-cCCcEEEcccCcccccCChhhhcc-----------------------------------------------------
Q 040206          231 AN-STLEILDMRMNKFSGSLPQNICKK-----------------------------------------------------  256 (347)
Q Consensus       231 ~~-~~L~~L~L~~~~~~~~~~~~~~~~-----------------------------------------------------  256 (347)
                      .. ++|+.|++++|.+.+.+|..+...                                                     
T Consensus       535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (768)
T 3rgz_A          535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN  614 (768)
T ss_dssp             GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred             cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence            43 788888888888887777654321                                                     


Q ss_pred             ----------------------------ccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206          257 ----------------------------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       257 ----------------------------~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~  308 (347)
                                                  .-.+.+|..++.+++|+.|+|++|.+++..|..++.+++|+.|||++|.++|
T Consensus       615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g  694 (768)
T 3rgz_A          615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG  694 (768)
T ss_dssp             TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence                                        0113456667777777777777777777777777777778888888888887


Q ss_pred             ccCCccccceeeeeeEeec
Q 040206          309 PIGKLRSRWSGHFIVRTVF  327 (347)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~  327 (347)
                      .+|..+..+..+..+....
T Consensus       695 ~ip~~l~~l~~L~~L~ls~  713 (768)
T 3rgz_A          695 RIPQAMSALTMLTEIDLSN  713 (768)
T ss_dssp             CCCGGGGGCCCCSEEECCS
T ss_pred             cCChHHhCCCCCCEEECcC
Confidence            7777777766665555443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.9e-35  Score=282.00  Aligned_cols=311  Identities=34%  Similarity=0.472  Sum_probs=270.0

Q ss_pred             CceEEEecCCCCC-CCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCC-cccEEEcCCCcCCCCCC-----CCCCCC
Q 040206            1 KTIKTQVKTCNIS-EFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVH-TLQFLILSQNVLTSIDH-----LPWKNL   72 (347)
Q Consensus         1 ~l~~l~l~~~~~~-~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~-----~~~~~L   72 (347)
                      +|++|++++|.+. .+|. ++.++++|++|++++|.+.+.+|..+...  + +|++|++++|.+++...     ..+++|
T Consensus       319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L  396 (768)
T 3rgz_A          319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--SASLLTLDLSSNNFSGPILPNLCQNPKNTL  396 (768)
T ss_dssp             TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH--TTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred             CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh--hcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence            4789999999998 8886 49999999999999999999999998875  6 99999999998765333     226789


Q ss_pred             cEEEccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCC
Q 040206           73 QYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMN  148 (347)
Q Consensus        73 ~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~  148 (347)
                      ++|++++|.+.+..+..   +++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+ .+++|+.|++++|
T Consensus       397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  476 (768)
T 3rgz_A          397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN  476 (768)
T ss_dssp             CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence            99999999988655543   4889999999999998889999999999999999999986666555 5679999999999


Q ss_pred             ccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCc
Q 040206          149 NFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE  228 (347)
Q Consensus       149 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  228 (347)
                      .+.+..|..+..+++|++|++++|.++...|.+++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+.
T Consensus       477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred             cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence            99888899999999999999999999988899999999999999999999888899999999999999999988754432


Q ss_pred             cc-----------------------------------------------------------------------cccCCcE
Q 040206          229 CL-----------------------------------------------------------------------ANSTLEI  237 (347)
Q Consensus       229 ~~-----------------------------------------------------------------------~~~~L~~  237 (347)
                      .+                                                                       ..+.|+.
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~  636 (768)
T 3rgz_A          557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF  636 (768)
T ss_dssp             GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred             HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence            21                                                                       0146889


Q ss_pred             EEcccCcccccCChhhhcc-----------ccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEccccee
Q 040206          238 LDMRMNKFSGSLPQNICKK-----------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF  306 (347)
Q Consensus       238 L~L~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~  306 (347)
                      |++++|.+++.+|..+...           .-.+.+|..++.+++|++|+|++|++++..|..+..+++|+.|++++|++
T Consensus       637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            9999999999999887664           23457889999999999999999999999999999999999999999999


Q ss_pred             ecccCCc
Q 040206          307 WGPIGKL  313 (347)
Q Consensus       307 ~~~~~~~  313 (347)
                      +|.+|..
T Consensus       717 ~g~iP~~  723 (768)
T 3rgz_A          717 SGPIPEM  723 (768)
T ss_dssp             EEECCSS
T ss_pred             cccCCCc
Confidence            9999965

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.8e-35  Score=265.16  Aligned_cols=298  Identities=21%  Similarity=0.252  Sum_probs=234.7

Q ss_pred             CceEEEecCCCCCCC-ChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEE
Q 040206            1 KTIKTQVKTCNISEF-PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLT   76 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~   76 (347)
                      ++++|++++|.++.+ |..+.++++|++|++++|.+.+.++...+. ++++|++|++++|.++.+..   ..+++|++|+
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR-GLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT-TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccc-ccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            478999999999954 778999999999999999987676554444 55999999999999988754   5678999999


Q ss_pred             ccCCCCCccC-----CCCCCCccEEEcccCcccccCCcc-ccCCCCccEEEcccCcccccCCccc---------------
Q 040206           77 LDSNLLQGSL-----PDLPPHMVQLLISNNSLTGEIPSS-FCNLSSIQYLNLSNNSLSGQIPQCL---------------  135 (347)
Q Consensus        77 l~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~---------------  135 (347)
                      +++|.+.+..     ...+++|++|++++|.+....+.. +..+++|++|++++|.+....+..+               
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            9999987522     334589999999999999776665 7899999999999998876555433               


Q ss_pred             --------------------CCccccEEECCCCccccccCccC-------------------------------------
Q 040206          136 --------------------GNSTLETLDLGMNNFQGSIPQTN-------------------------------------  158 (347)
Q Consensus       136 --------------------~~~~L~~L~l~~~~~~~~~~~~~-------------------------------------  158 (347)
                                          ..++|+.|++++|.+....+..+                                     
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence                                12457777777775532221111                                     


Q ss_pred             C--CCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCC
Q 040206          159 A--KGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTL  235 (347)
Q Consensus       159 ~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L  235 (347)
                      .  ..++|+++++++|.++...+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .++|
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL  349 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence            0  124677777777777766677788888888888888888877777888888888888888888766555544 4788


Q ss_pred             cEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCC
Q 040206          236 EILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGK  312 (347)
Q Consensus       236 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~  312 (347)
                      +.|++++|.+++.             .|..+..+++|++|++++|.+++.++..+..+++|+.|++++|++.+.+|.
T Consensus       350 ~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          350 EVLDLSYNHIRAL-------------GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CEEECCSSCCCEE-------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CEEECCCCccccc-------------ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            8899998888754             345678899999999999999987877889999999999999999999883

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=256.79  Aligned_cols=296  Identities=22%  Similarity=0.192  Sum_probs=249.4

Q ss_pred             CceEEEecCCCCCCC-ChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEE
Q 040206            1 KTIKTQVKTCNISEF-PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLT   76 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~   76 (347)
                      .++.|+|++|.++.+ +.+|.++++|++|++++|.+.+..|..+..+  ++|++|++++|.++.++.   ..+++|++|+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL--FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCC--ccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            368899999999965 4689999999999999999987667777654  999999999999998876   4678999999


Q ss_pred             ccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccc
Q 040206           77 LDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQG  152 (347)
Q Consensus        77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~  152 (347)
                      +++|.+....+..   +++|++|++++|.+....+..|..+++|+.|++++|.+....+..+ .+++|+.|++++|.+..
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            9999988665433   4899999999999988888889999999999999998886655433 56799999999999887


Q ss_pred             ccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-
Q 040206          153 SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-  231 (347)
Q Consensus       153 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-  231 (347)
                      ..+..+..+++|++|++++|......+.......+|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+. 
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence            7777888999999999999876655555555566999999999999866556788999999999999999876665444 


Q ss_pred             ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206          232 NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG  311 (347)
Q Consensus       232 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~  311 (347)
                      .++|+.|++++|.+.+.             .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+...
T Consensus       271 l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          271 LLRLQEIQLVGGQLAVV-------------EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             CTTCCEEECCSSCCSEE-------------CTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             cccCCEEECCCCccceE-------------CHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            38999999999999864             34578899999999999999998888888999999999999999986543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.6e-33  Score=260.86  Aligned_cols=309  Identities=17%  Similarity=0.222  Sum_probs=194.6

Q ss_pred             CceEEEecCCCCCC------------------CChhhh--cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCc
Q 040206            1 KTIKTQVKTCNISE------------------FPDILR--TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNV   60 (347)
Q Consensus         1 ~l~~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   60 (347)
                      +|++|+|++|.++.                  +|+.+.  ++++|++|++++|.+.+.+|..+..+  ++|++|++++|.
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~  284 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL--PEMQLINVACNR  284 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC--SSCCEEECTTCT
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC--CCCCEEECcCCC
Confidence            36777777777775                  777766  77777777777777777777776654  777777777776


Q ss_pred             -CCC--CCC--CC------CCCCcEEEccCCCCCccCC----CCCCCccEEEcccCcccccCCccccCCCCccEEEcccC
Q 040206           61 -LTS--IDH--LP------WKNLQYLTLDSNLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN  125 (347)
Q Consensus        61 -l~~--~~~--~~------~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  125 (347)
                       +++  ++.  ..      +++|++|++++|.++..+.    ..+++|++|++++|.+.+.+| .+..+++|++|++++|
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN  363 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence             664  332  22      2677777777777763322    124667777777777765555 6666667777777777


Q ss_pred             cccccCCcccCCcc-ccEEECCCCccccccCccCCCCC--CccEEEccCCcccCCCccccc-------cCCCCcEEEccC
Q 040206          126 SLSGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGC--NLTSLRLSGNHLEGPLPPSLI-------NCVNLQFLDVGN  195 (347)
Q Consensus       126 ~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~  195 (347)
                      .+...+.....+++ |++|++++|.+. .+|..+....  +|++|++++|.++...|..+.       .+++|+.|++++
T Consensus       364 ~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~  442 (636)
T 4eco_A          364 QITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN  442 (636)
T ss_dssp             EEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred             ccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence            66644444444555 777777776665 5555554443  666666666666655555555       555666666666


Q ss_pred             CcccCCCCccccCCCCCCeEEecCCccccCcCcccccc--------CCcEEEcccCcccccCChhhh--cc---------
Q 040206          196 NNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANS--------TLEILDMRMNKFSGSLPQNIC--KK---------  256 (347)
Q Consensus       196 n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--------~L~~L~L~~~~~~~~~~~~~~--~~---------  256 (347)
                      |.+.+..+..+..+++|+.|++++|.++......+...        +|+.|++++|.++ .+|..+.  ..         
T Consensus       443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls  521 (636)
T 4eco_A          443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLS  521 (636)
T ss_dssp             SCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECC
T ss_pred             CccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECC
Confidence            66664333344456666666666666663333333221        6666666666666 4444332  11         


Q ss_pred             -ccccCCCcCccCCCCCcEEEc------cCCccCCccchhhhhccCCCEEEcccceeecccCCccc
Q 040206          257 -LCFGPLPPSLVNCQYLEVLDV------GNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRS  315 (347)
Q Consensus       257 -~~~~~l~~~~~~~~~L~~L~L------~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~  315 (347)
                       .....+|..+..+++|++|++      ++|.+.+..+..+..+++|+.|++++|++ +.+|..+.
T Consensus       522 ~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~  586 (636)
T 4eco_A          522 YNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT  586 (636)
T ss_dssp             SSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             CCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence             122246666777888888888      45666666777777788888888888888 56666543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.4e-32  Score=254.66  Aligned_cols=304  Identities=21%  Similarity=0.290  Sum_probs=244.5

Q ss_pred             CceEEEecCCCCC-CCChhhhcCCCccEEeccCCc-ccc-cCChhhhhc----CCCcccEEEcCCCcCCCCCC----CCC
Q 040206            1 KTIKTQVKTCNIS-EFPDILRTQHQLEWLDLSKNQ-IRG-RIPSWMWDI----GVHTLQFLILSQNVLTSIDH----LPW   69 (347)
Q Consensus         1 ~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~----~~~~L~~L~l~~~~l~~~~~----~~~   69 (347)
                      +|++|++++|.+. .+|+.+.++++|++|++++|+ +++ .+|..+..+    .+++|++|++++|.++.++.    ..+
T Consensus       250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l  329 (636)
T 4eco_A          250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM  329 (636)
T ss_dssp             TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTC
T ss_pred             CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccC
Confidence            4789999999877 899999999999999999998 887 788877652    34899999999999998875    678


Q ss_pred             CCCcEEEccCCCCCccCCCC--CCCccEEEcccCcccccCCccccCCCC-ccEEEcccCcccccCCcccCC--ccccEEE
Q 040206           70 KNLQYLTLDSNLLQGSLPDL--PPHMVQLLISNNSLTGEIPSSFCNLSS-IQYLNLSNNSLSGQIPQCLGN--STLETLD  144 (347)
Q Consensus        70 ~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~--~~L~~L~  144 (347)
                      ++|++|++++|.+.+.++.+  +++|++|++++|.+. ..|..+..+++ |++|++++|.+...+......  ++|+.|+
T Consensus       330 ~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~  408 (636)
T 4eco_A          330 KKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID  408 (636)
T ss_dssp             TTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEE
T ss_pred             CCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEE
Confidence            99999999999998554433  389999999999999 77778999999 999999999998544332232  3799999


Q ss_pred             CCCCccccccCccCC-------CCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCC-------C
Q 040206          145 LGMNNFQGSIPQTNA-------KGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNS-------T  210 (347)
Q Consensus       145 l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~-------~  210 (347)
                      +++|.+.+..|..+.       .+++|++|++++|.++...+..+..+++|+.|++++|.+....+..+...       +
T Consensus       409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~  488 (636)
T 4eco_A          409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY  488 (636)
T ss_dssp             CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGG
T ss_pred             CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccC
Confidence            999999877887777       77899999999999985444445668999999999998884333333333       2


Q ss_pred             CCCeEEecCCccccCcCccc--cccCCcEEEcccCcccccCChhhhccc-----------------cccCCCcCccCCCC
Q 040206          211 RLSFLDVGNNSLSGPIPECL--ANSTLEILDMRMNKFSGSLPQNICKKL-----------------CFGPLPPSLVNCQY  271 (347)
Q Consensus       211 ~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~  271 (347)
                      +|+.|++++|.++.......  ..++|+.|++++|.+++ +|..+....                 ..+.+|..+..+++
T Consensus       489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~  567 (636)
T 4eco_A          489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS  567 (636)
T ss_dssp             GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred             CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence            89999999999885444444  55889999999999987 777665431                 14567888999999


Q ss_pred             CcEEEccCCccCCccchhhhhccCCCEEEcccceeecc
Q 040206          272 LEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP  309 (347)
Q Consensus       272 L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~  309 (347)
                      |++|++++|.+.. .|..+.  ++|+.|++++|++..-
T Consensus       568 L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          568 LTQLQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCEEECCSSCCCB-CCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCEEECCCCcCCc-cCHhHh--CcCCEEECcCCCCccc
Confidence            9999999999954 454444  7999999999998753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.6e-32  Score=252.55  Aligned_cols=293  Identities=21%  Similarity=0.209  Sum_probs=250.6

Q ss_pred             ceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEc
Q 040206            2 TIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTL   77 (347)
Q Consensus         2 l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l   77 (347)
                      ++.+++++|.+..++. +|.++++|++|++++|.++ .+|..+..  +++|++|++++|.++.+..   ..+++|++|++
T Consensus       256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG--LSTLKKLVLSANKFENLCQISASNFPSLTHLSI  332 (606)
T ss_dssp             EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS--CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred             eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc--cccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence            6789999999997665 6999999999999999998 78887764  4999999999999988744   66799999999


Q ss_pred             cCCCCCccCC----CCCCCccEEEcccCcccccC--CccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcc
Q 040206           78 DSNLLQGSLP----DLPPHMVQLLISNNSLTGEI--PSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNF  150 (347)
Q Consensus        78 ~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  150 (347)
                      ++|.+....+    ..+++|++|++++|.+....  +..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            9998774332    33589999999999998655  6778999999999999999887766655 567999999999998


Q ss_pred             ccccCc-cCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccC---CCCccccCCCCCCeEEecCCccccCc
Q 040206          151 QGSIPQ-TNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG---PIPECLGNSTRLSFLDVGNNSLSGPI  226 (347)
Q Consensus       151 ~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~  226 (347)
                      ....+. .+..+++|++|++++|.+....+..+..+++|++|++++|.+.+   ..+..+..+++|+.|++++|.+++..
T Consensus       413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  492 (606)
T 3t6q_A          413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID  492 (606)
T ss_dssp             ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence            765544 48889999999999999987888889999999999999999875   23356889999999999999998776


Q ss_pred             Ccccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccce
Q 040206          227 PECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR  305 (347)
Q Consensus       227 ~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~  305 (347)
                      +..+. .++|+.|++++|.+++.+|             ..+..++.| +|++++|.+++.++..+..+++|+.+++++|+
T Consensus       493 ~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          493 QHAFTSLKMMNHVDLSHNRLTSSSI-------------EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCGGGG-------------GGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred             hhhhccccCCCEEECCCCccCcCCh-------------hHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence            65554 4899999999999997544             467788999 99999999999888889999999999999999


Q ss_pred             eecccC
Q 040206          306 FWGPIG  311 (347)
Q Consensus       306 ~~~~~~  311 (347)
                      +.+.++
T Consensus       559 ~~c~c~  564 (606)
T 3t6q_A          559 LDCTCS  564 (606)
T ss_dssp             EECSGG
T ss_pred             ccccCC
Confidence            998776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.8e-32  Score=252.50  Aligned_cols=321  Identities=20%  Similarity=0.179  Sum_probs=176.9

Q ss_pred             ceEEEecCCCCCCC-ChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--------------
Q 040206            2 TIKTQVKTCNISEF-PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--------------   66 (347)
Q Consensus         2 l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--------------   66 (347)
                      +++|++++|.++.+ |.+|.++++|++|++++|.+.+..|..+...  ++|++|++++|.++.+..              
T Consensus        35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ--HRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTC--TTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCc--cccCeeeCCCCcccccChhhhcccccccEeec
Confidence            44555555555533 3455555555555555555554444444322  555555555554444322              


Q ss_pred             -------------CCCCCCcEEEccCCCCCccC-CCC--CCCccEEEcccCcccccCCccccCCCCcc--EEEcccCccc
Q 040206           67 -------------LPWKNLQYLTLDSNLLQGSL-PDL--PPHMVQLLISNNSLTGEIPSSFCNLSSIQ--YLNLSNNSLS  128 (347)
Q Consensus        67 -------------~~~~~L~~L~l~~~~~~~~~-~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~  128 (347)
                                   ..+++|++|++++|.+.+.. +..  +++|++|++++|.+....+..+..+++|+  .|++++|.+.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence                         33344555555555544321 111  25555555555555544445555555555  5555555555


Q ss_pred             ccCCcccCCc----------------------------------------------------cccEEECCCCccccccCc
Q 040206          129 GQIPQCLGNS----------------------------------------------------TLETLDLGMNNFQGSIPQ  156 (347)
Q Consensus       129 ~~~~~~~~~~----------------------------------------------------~L~~L~l~~~~~~~~~~~  156 (347)
                      ...+..+...                                                    +++.+++++|.+....+.
T Consensus       193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~  272 (606)
T 3t6q_A          193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN  272 (606)
T ss_dssp             EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred             ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence            4443333222                                                    345555555555544455


Q ss_pred             cCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcC-c-cccccC
Q 040206          157 TNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIP-E-CLANST  234 (347)
Q Consensus       157 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~-~~~~~~  234 (347)
                      .+..+++|++|++++|.++ ..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+ . ....++
T Consensus       273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  351 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN  351 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred             HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence            5666777777777777776 556667777777777777777765556666677777777777776553322 2 222366


Q ss_pred             CcEEEcccCcccccC--Chhhhcc----------cc-ccCCCcCccCCCCCcEEEccCCccCCccc-hhhhhccCCCEEE
Q 040206          235 LEILDMRMNKFSGSL--PQNICKK----------LC-FGPLPPSLVNCQYLEVLDVGNNQIDDTFL-YWLDVLLQLQVLI  300 (347)
Q Consensus       235 L~~L~L~~~~~~~~~--~~~~~~~----------~~-~~~l~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~  300 (347)
                      |++|++++|.+.+..  +..+...          .. .+..+..+..+++|++|++++|.+.+..+ ..+..+++|+.|+
T Consensus       352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  431 (606)
T 3t6q_A          352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN  431 (606)
T ss_dssp             CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred             CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence            777777777666432  2222111          00 11224456666777777777777665433 3366677777777


Q ss_pred             cccceeecccCCccccceeeeeeEe
Q 040206          301 LRSNRFWGPIGKLRSRWSGHFIVRT  325 (347)
Q Consensus       301 L~~n~~~~~~~~~~~~~~~~~~~~~  325 (347)
                      +++|.+.+..|..+.....+..+..
T Consensus       432 l~~n~l~~~~~~~~~~l~~L~~L~L  456 (606)
T 3t6q_A          432 LSHSLLDISSEQLFDGLPALQHLNL  456 (606)
T ss_dssp             CTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred             CCCCccCCcCHHHHhCCCCCCEEEC
Confidence            7777777666666666555554443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.6e-32  Score=248.68  Aligned_cols=306  Identities=23%  Similarity=0.177  Sum_probs=204.4

Q ss_pred             CceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccC
Q 040206            1 KTIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDS   79 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~   79 (347)
                      ++++|++++|.+..++ .+|.++++|++|++++|++++..|..+..+  ++|++|++++|.++.++...+++|++|++++
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~   99 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN--QELEYLDLSHNKLVKISCHPTVNLKHLDLSF   99 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC--TTCCEEECCSSCCCEEECCCCCCCSEEECCS
T ss_pred             cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcc--cCCCEEecCCCceeecCccccCCccEEeccC
Confidence            4788899999888666 588889999999999998886667677654  8899999999988887777788888888888


Q ss_pred             CCCCcc-CC---CCCCCccEEEcccCcccccCCccccCCCCc--cEEEcccCcc--cccCCcccC---------------
Q 040206           80 NLLQGS-LP---DLPPHMVQLLISNNSLTGEIPSSFCNLSSI--QYLNLSNNSL--SGQIPQCLG---------------  136 (347)
Q Consensus        80 ~~~~~~-~~---~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~---------------  136 (347)
                      |.+.+. .+   ..+++|++|++++|.+..   ..+..+++|  +.|++++|.+  ....+..+.               
T Consensus       100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~  176 (520)
T 2z7x_B          100 NAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK  176 (520)
T ss_dssp             SCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred             CccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence            888753 22   224777777777776653   123333333  4444444433  111110000               


Q ss_pred             ---------------------------------------------------------------------CccccEEECCC
Q 040206          137 ---------------------------------------------------------------------NSTLETLDLGM  147 (347)
Q Consensus       137 ---------------------------------------------------------------------~~~L~~L~l~~  147 (347)
                                                                                           .++|++|++++
T Consensus       177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~  256 (520)
T 2z7x_B          177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN  256 (520)
T ss_dssp             CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred             chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence                                                                                 01233333333


Q ss_pred             CccccccCccC-----------------------------------------------------CCCCCccEEEccCCcc
Q 040206          148 NNFQGSIPQTN-----------------------------------------------------AKGCNLTSLRLSGNHL  174 (347)
Q Consensus       148 ~~~~~~~~~~~-----------------------------------------------------~~~~~L~~L~l~~~~~  174 (347)
                      |.+.+..|..+                                                     ..+++|++|++++|.+
T Consensus       257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l  336 (520)
T 2z7x_B          257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL  336 (520)
T ss_dssp             EEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred             ccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCcc
Confidence            33322222211                                                     4567788888888887


Q ss_pred             cCCCccccccCCCCcEEEccCCcccC--CCCccccCCCCCCeEEecCCccccCcCc-cc-cccCCcEEEcccCcccccCC
Q 040206          175 EGPLPPSLINCVNLQFLDVGNNNLSG--PIPECLGNSTRLSFLDVGNNSLSGPIPE-CL-ANSTLEILDMRMNKFSGSLP  250 (347)
Q Consensus       175 ~~~~~~~l~~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~-~~~~L~~L~L~~~~~~~~~~  250 (347)
                      +...+..++.+++|+.|++++|.+.+  ..|..+..+++|+.|++++|.+.+..+. .+ ..++|+.|++++|.+++.+|
T Consensus       337 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  416 (520)
T 2z7x_B          337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF  416 (520)
T ss_dssp             CTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred             ChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh
Confidence            76667777788888888888887774  3445677788888888888887763332 22 23677788888877776555


Q ss_pred             hhhhc-c-------ccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206          251 QNICK-K-------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG  311 (347)
Q Consensus       251 ~~~~~-~-------~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~  311 (347)
                      ..+.. .       .....+|..+..+++|++|++++|.+++.+...+..+++|+.|++++|++.+.++
T Consensus       417 ~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          417 RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            54321 1       2344677767788888999999998886555557888889999999998887655

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.8e-31  Score=230.94  Aligned_cols=289  Identities=23%  Similarity=0.302  Sum_probs=239.5

Q ss_pred             CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccC
Q 040206            1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDS   79 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~   79 (347)
                      ++++|+++++.+..++. +..+++|++|++++|.++ .++. +.  .+++|++|++++|.++.++. ..+++|++|++++
T Consensus        45 ~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~-~~--~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~  119 (347)
T 4fmz_A           45 SITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP-LS--NLVKLTNLYIGTNKITDISALQNLTNLRELYLNE  119 (347)
T ss_dssp             TCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG-GT--TCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTT
T ss_pred             cccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchh-hh--cCCcCCEEEccCCcccCchHHcCCCcCCEEECcC
Confidence            47899999999998876 899999999999999998 4554 44  55999999999999998875 7789999999999


Q ss_pred             CCCCccCC-CCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccC
Q 040206           80 NLLQGSLP-DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTN  158 (347)
Q Consensus        80 ~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  158 (347)
                      |.+..... ..+++|++|++++|..... ...+..+++|++|++++|.+....+ ...+++|++|++++|.+.... . +
T Consensus       120 n~i~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~-~  195 (347)
T 4fmz_A          120 DNISDISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS-P-L  195 (347)
T ss_dssp             SCCCCCGGGTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG-G-G
T ss_pred             CcccCchhhccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc-c-c
Confidence            99886543 3458999999999965533 3448899999999999998875544 556789999999999887433 2 7


Q ss_pred             CCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEE
Q 040206          159 AKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEIL  238 (347)
Q Consensus       159 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  238 (347)
                      ..+++|+.+++++|.+....+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++. +.....++|+.|
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L  270 (347)
T 4fmz_A          196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKML  270 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEE
T ss_pred             cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEE
Confidence            788999999999999875433  8889999999999999985443  88999999999999998854 444455899999


Q ss_pred             EcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccccce
Q 040206          239 DMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWS  318 (347)
Q Consensus       239 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~  318 (347)
                      ++++|.+++              + ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..|  +..+.
T Consensus       271 ~l~~n~l~~--------------~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~  333 (347)
T 4fmz_A          271 NVGSNQISD--------------I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS  333 (347)
T ss_dssp             ECCSSCCCC--------------C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred             EccCCccCC--------------C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence            999999884              3 347789999999999999998888889999999999999999988665  44444


Q ss_pred             ee
Q 040206          319 GH  320 (347)
Q Consensus       319 ~~  320 (347)
                      .+
T Consensus       334 ~L  335 (347)
T 4fmz_A          334 KM  335 (347)
T ss_dssp             TC
T ss_pred             cc
Confidence            33

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-31  Score=237.08  Aligned_cols=284  Identities=25%  Similarity=0.219  Sum_probs=220.5

Q ss_pred             CceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEE
Q 040206            1 KTIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLT   76 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~   76 (347)
                      +++.++++++.+..+|. .+.++++|++|++++|.+.+..+..+..  +++|++|++++|.++.++.   ..+++|++|+
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccC--CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            36789999999998886 5789999999999999998555556654  4999999999999988865   4678899999


Q ss_pred             ccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCcc--------------
Q 040206           77 LDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST--------------  139 (347)
Q Consensus        77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--------------  139 (347)
                      +++|.+.......   +++|++|++++|.+....+..+..+++|++|++++|.+.....  ...++              
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG--GGCTTCSEEECCSSCCSEE
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc--ccccccceeeccccccccc
Confidence            9999998766543   5899999999999987778889999999999999998875432  22334              


Q ss_pred             -----ccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCe
Q 040206          140 -----LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSF  214 (347)
Q Consensus       140 -----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  214 (347)
                           |+.|++++|.+... +.  ...++|++|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus       202 ~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (390)
T 3o6n_A          202 AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  276 (390)
T ss_dssp             ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence                 45555555554422 22  1235788888888887643  56788888999999988888777788888888999


Q ss_pred             EEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhcc
Q 040206          215 LDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLL  294 (347)
Q Consensus       215 L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~  294 (347)
                      |++++|.+++........++|+.|++++|.+.              .+|..+..+++|++|++++|.+++..   +..++
T Consensus       277 L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~--------------~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~  339 (390)
T 3o6n_A          277 LYISNNRLVALNLYGQPIPTLKVLDLSHNHLL--------------HVERNQPQFDRLENLYLDHNSIVTLK---LSTHH  339 (390)
T ss_dssp             EECCSSCCCEEECSSSCCTTCCEEECCSSCCC--------------CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred             EECCCCcCcccCcccCCCCCCCEEECCCCcce--------------ecCccccccCcCCEEECCCCccceeC---chhhc
Confidence            99988888765444444578899999988887              34555677888999999999887653   56778


Q ss_pred             CCCEEEcccceeeccc
Q 040206          295 QLQVLILRSNRFWGPI  310 (347)
Q Consensus       295 ~L~~l~L~~n~~~~~~  310 (347)
                      +|+.|++++|++.+..
T Consensus       340 ~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          340 TLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             CCSEEECCSSCEEHHH
T ss_pred             cCCEEEcCCCCccchh
Confidence            8999999999988753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-31  Score=244.56  Aligned_cols=306  Identities=18%  Similarity=0.133  Sum_probs=257.6

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccC
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDS   79 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~   79 (347)
                      +.++.++..++.+|..+.  ++++.|++++|.+++..+..+..  +++|++|++++|.++.+..   ..+++|++|++++
T Consensus        14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFAS--FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTT--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccC--CCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            467788888999998664  68999999999999666666764  4999999999999998855   5678999999999


Q ss_pred             CCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccC
Q 040206           80 NLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIP  155 (347)
Q Consensus        80 ~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~  155 (347)
                      |.+.......   +++|++|++++|.+....+..+..+++|+.|++++|.+....+..+ .+++|++|++++|.+....+
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            9998766543   4899999999999998888899999999999999999987766555 56799999999999886666


Q ss_pred             ccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccC
Q 040206          156 QTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NST  234 (347)
Q Consensus       156 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~  234 (347)
                      ..+..+++|+.|++++|.+....+..+..+++|+.|++++|...+..+.......+|+.|++++|.++......+. .++
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  249 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY  249 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence            6788999999999999999877777889999999999999987666666666667999999999999865544333 489


Q ss_pred             CcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCcc
Q 040206          235 LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLR  314 (347)
Q Consensus       235 L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~  314 (347)
                      |+.|++++|.+.+.             .+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+
T Consensus       250 L~~L~Ls~n~l~~~-------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  316 (477)
T 2id5_A          250 LRFLNLSYNPISTI-------------EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF  316 (477)
T ss_dssp             CCEEECCSSCCCEE-------------CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred             cCeeECCCCcCCcc-------------ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence            99999999999853             23467889999999999999998888889999999999999999998666666


Q ss_pred             ccceeeeeeEe
Q 040206          315 SRWSGHFIVRT  325 (347)
Q Consensus       315 ~~~~~~~~~~~  325 (347)
                      .....+..+..
T Consensus       317 ~~l~~L~~L~l  327 (477)
T 2id5_A          317 HSVGNLETLIL  327 (477)
T ss_dssp             SCGGGCCEEEC
T ss_pred             CCCcccCEEEc
Confidence            66665555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.1e-32  Score=244.86  Aligned_cols=306  Identities=20%  Similarity=0.217  Sum_probs=235.9

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCC-CCCC---CCCCCCcEEEcc
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT-SIDH---LPWKNLQYLTLD   78 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~---~~~~~L~~L~l~   78 (347)
                      +.++.+++.++.+|. +.  ++|++|++++|.+.+..+..+..+  ++|++|++++|.+. .++.   ..+++|++|+++
T Consensus        13 ~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRL--QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSC--TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccC--ccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            356778888999997 33  899999999999997667777654  99999999999876 3433   667999999999


Q ss_pred             CCCCCccCCCC---CCCccEEEcccCcccccCCc--cccCCCCccEEEcccCcccccCCcc--cCCccccEEECCCCccc
Q 040206           79 SNLLQGSLPDL---PPHMVQLLISNNSLTGEIPS--SFCNLSSIQYLNLSNNSLSGQIPQC--LGNSTLETLDLGMNNFQ  151 (347)
Q Consensus        79 ~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~  151 (347)
                      +|.+....+..   +++|++|++++|.+.+..+.  .+..+++|++|++++|.+....+..  ..+++|++|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            99998765443   48999999999999864433  4889999999999999998776653  36789999999999987


Q ss_pred             cccCccCCCC----------------------------------CCccEEEccCCcccCCCccccc--------------
Q 040206          152 GSIPQTNAKG----------------------------------CNLTSLRLSGNHLEGPLPPSLI--------------  183 (347)
Q Consensus       152 ~~~~~~~~~~----------------------------------~~L~~L~l~~~~~~~~~~~~l~--------------  183 (347)
                      ...+..+..+                                  ++|++|++++|.++...+..+.              
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            6655544433                                  5677777777765432221111              


Q ss_pred             -------------------------cCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcE
Q 040206          184 -------------------------NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEI  237 (347)
Q Consensus       184 -------------------------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~  237 (347)
                                               ..++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .++|+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  327 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK  327 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence                                     125788888888888777777888888888888888888876554443 478888


Q ss_pred             EEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccccc
Q 040206          238 LDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRW  317 (347)
Q Consensus       238 L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~  317 (347)
                      |++++|.+.+.             .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+...
T Consensus       328 L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  394 (455)
T 3v47_A          328 LNLSQNFLGSI-------------DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL  394 (455)
T ss_dssp             EECCSSCCCEE-------------CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             EECCCCccCCc-------------ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence            88888888753             23457788999999999999988878888999999999999999998666666666


Q ss_pred             eeeeeeEee
Q 040206          318 SGHFIVRTV  326 (347)
Q Consensus       318 ~~~~~~~~~  326 (347)
                      ..+..+...
T Consensus       395 ~~L~~L~l~  403 (455)
T 3v47_A          395 TSLQKIWLH  403 (455)
T ss_dssp             TTCCEEECC
T ss_pred             CcccEEEcc
Confidence            666555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.2e-31  Score=247.73  Aligned_cols=306  Identities=21%  Similarity=0.175  Sum_probs=202.5

Q ss_pred             CceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccC
Q 040206            1 KTIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDS   79 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~   79 (347)
                      ++++|++++|.+..++ .+|.++++|++|++++|.+++..|..+..+  ++|++|++++|.++.++...+++|++|++++
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~  130 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN--QDLEYLDVSHNRLQNISCCPMASLRHLDLSF  130 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC--TTCCEEECTTSCCCEECSCCCTTCSEEECCS
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC--CCCCEEECCCCcCCccCccccccCCEEECCC
Confidence            3678888888888666 588888888888888888886666666544  8888888888888888777788888888888


Q ss_pred             CCCCccCC----CCCCCccEEEcccCcccccCCccccCCCCc--cEEEcccCcc--cccCCcccC---------------
Q 040206           80 NLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSI--QYLNLSNNSL--SGQIPQCLG---------------  136 (347)
Q Consensus        80 ~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~---------------  136 (347)
                      |.+.....    ..+++|++|++++|.+...   .+..+++|  +.|++++|.+  ....+..+.               
T Consensus       131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~  207 (562)
T 3a79_B          131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS  207 (562)
T ss_dssp             SCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred             CCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence            88876331    2247788888888776642   23333333  6666655544  211111100               


Q ss_pred             -------------------------------------------------------------------CccccEEECCCCc
Q 040206          137 -------------------------------------------------------------------NSTLETLDLGMNN  149 (347)
Q Consensus       137 -------------------------------------------------------------------~~~L~~L~l~~~~  149 (347)
                                                                                         ..+|++|++++|.
T Consensus       208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~  287 (562)
T 3a79_B          208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT  287 (562)
T ss_dssp             CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred             chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence                                                                               0134444444444


Q ss_pred             cccccCccC-----------------------------------------------------CCCCCccEEEccCCcccC
Q 040206          150 FQGSIPQTN-----------------------------------------------------AKGCNLTSLRLSGNHLEG  176 (347)
Q Consensus       150 ~~~~~~~~~-----------------------------------------------------~~~~~L~~L~l~~~~~~~  176 (347)
                      +.+..|..+                                                     ..+++|++|++++|.++.
T Consensus       288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~  367 (562)
T 3a79_B          288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD  367 (562)
T ss_dssp             ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT
T ss_pred             eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc
Confidence            332233222                                                     455677777777777776


Q ss_pred             CCccccccCCCCcEEEccCCcccCC--CCccccCCCCCCeEEecCCccccCcC-ccc-cccCCcEEEcccCcccccCChh
Q 040206          177 PLPPSLINCVNLQFLDVGNNNLSGP--IPECLGNSTRLSFLDVGNNSLSGPIP-ECL-ANSTLEILDMRMNKFSGSLPQN  252 (347)
Q Consensus       177 ~~~~~l~~~~~L~~L~l~~n~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~L~~~~~~~~~~~~  252 (347)
                      ..+..+..+++|+.|++++|.+.+.  .|..+..+++|+.|++++|.+++..+ ..+ ..++|+.|++++|.+++.+|..
T Consensus       368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  447 (562)
T 3a79_B          368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC  447 (562)
T ss_dssp             TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred             chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence            6666777777777777777777642  23456677777777777777765233 222 2266777777777776555443


Q ss_pred             hh-cc-------ccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206          253 IC-KK-------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG  311 (347)
Q Consensus       253 ~~-~~-------~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~  311 (347)
                      +. ..       .....+|..+..+++|++|++++|.++..++..+..+++|+.|++++|++.+.++
T Consensus       448 l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          448 LPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             hcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            32 11       2334677777788999999999999987555558889999999999999988765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2e-31  Score=250.43  Aligned_cols=126  Identities=21%  Similarity=0.275  Sum_probs=81.0

Q ss_pred             ceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEc
Q 040206            2 TIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTL   77 (347)
Q Consensus         2 l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l   77 (347)
                      +++|++++|.++.++. +|.++++|++|++++|.+++..|..+..  +++|++|++++|.++.+.+   ..+++|++|++
T Consensus        34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG--LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT--CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhc--hhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            5677777777774443 6777777777777777777544555543  3777777777777766643   45667777777


Q ss_pred             cCCCCCccCC---CCCCCccEEEcccCcccc-cCCccccCCCCccEEEcccCcccc
Q 040206           78 DSNLLQGSLP---DLPPHMVQLLISNNSLTG-EIPSSFCNLSSIQYLNLSNNSLSG  129 (347)
Q Consensus        78 ~~~~~~~~~~---~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~  129 (347)
                      ++|.+....+   ..+++|++|++++|.+.. ..|..++++++|++|++++|.+..
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence            7777654432   223667777777776654 345666666666666666665543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=9.9e-31  Score=228.94  Aligned_cols=277  Identities=21%  Similarity=0.255  Sum_probs=231.3

Q ss_pred             CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccC
Q 040206            1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDS   79 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~   79 (347)
                      +|++|++++|.++.++. +.++++|++|++++|.+++ ++ .+.  .+++|++|++++|.++.++. ..+++|++|++++
T Consensus        67 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~--~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~  141 (347)
T 4fmz_A           67 NLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-IS-ALQ--NLTNLRELYLNEDNISDISPLANLTKMYSLNLGA  141 (347)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CG-GGT--TCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTT
T ss_pred             CccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-ch-HHc--CCCcCCEEECcCCcccCchhhccCCceeEEECCC
Confidence            47899999999998887 9999999999999999984 44 444  45999999999999998876 7789999999999


Q ss_pred             CCCCccCC--CCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCcc
Q 040206           80 NLLQGSLP--DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQT  157 (347)
Q Consensus        80 ~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  157 (347)
                      |.......  ..+++|++|++++|.+....+  +..+++|+.|++++|.+....+ ...+++|+.+++++|.+....+  
T Consensus       142 n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--  216 (347)
T 4fmz_A          142 NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--  216 (347)
T ss_dssp             CTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--
T ss_pred             CCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--
Confidence            96554433  335899999999999885443  8899999999999999885544 5567899999999998874433  


Q ss_pred             CCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcE
Q 040206          158 NAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEI  237 (347)
Q Consensus       158 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  237 (347)
                      +..+++|++|++++|.++... . +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++. +.....++|+.
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~  291 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNS  291 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSE
T ss_pred             hhcCCcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCE
Confidence            778899999999999998543 3 88999999999999999853  5688999999999999999865 44455589999


Q ss_pred             EEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceee
Q 040206          238 LDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFW  307 (347)
Q Consensus       238 L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~  307 (347)
                      |++++|.+.+..+.             .+..+++|++|++++|.+++..+  +..+++|+.|++++|+++
T Consensus       292 L~L~~n~l~~~~~~-------------~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          292 LFLNNNQLGNEDME-------------VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSCCCGGGHH-------------HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EECcCCcCCCcChh-------------HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            99999999865433             46788999999999999988666  789999999999999986

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=8.9e-31  Score=227.74  Aligned_cols=290  Identities=20%  Similarity=0.247  Sum_probs=230.0

Q ss_pred             ceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEcc
Q 040206            2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLD   78 (347)
Q Consensus         2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~   78 (347)
                      ++.++++++.+..+|..+.  ++|+.|++++|.+.+..+..+..  +++|++|++++|.++.+..   ..+++|++|+++
T Consensus        35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKG--LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             CCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhC--CCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            6788999999999997664  78999999999998555656654  4999999999999988754   567899999999


Q ss_pred             CCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccc--cCCcccCCccccEEECCCCccccccCc
Q 040206           79 SNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG--QIPQCLGNSTLETLDLGMNNFQGSIPQ  156 (347)
Q Consensus        79 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~  156 (347)
                      +|.+........++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+...+|+.|++++|.+.. .|.
T Consensus       111 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~  189 (332)
T 2ft3_A          111 KNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK  189 (332)
T ss_dssp             SSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCS
T ss_pred             CCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCc
Confidence            999987777777899999999999997777778999999999999998853  44444444489999999998874 554


Q ss_pred             cCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCc
Q 040206          157 TNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLE  236 (347)
Q Consensus       157 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~  236 (347)
                      .+.  ++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.........++|+
T Consensus       190 ~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~  267 (332)
T 2ft3_A          190 DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ  267 (332)
T ss_dssp             SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCC
T ss_pred             ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCC
Confidence            443  689999999999987777788999999999999999987777788999999999999999885544445558999


Q ss_pred             EEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccC--CccchhhhhccCCCEEEcccce
Q 040206          237 ILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID--DTFLYWLDVLLQLQVLILRSNR  305 (347)
Q Consensus       237 ~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~l~L~~n~  305 (347)
                      .|++++|.+++..+..++..       ......+.|+.+++++|.+.  +..+..+..+++|+.+++++|+
T Consensus       268 ~L~l~~N~l~~~~~~~~~~~-------~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          268 VVYLHTNNITKVGVNDFCPV-------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             EEECCSSCCCBCCTTSSSCS-------SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             EEECCCCCCCccChhHcccc-------ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            99999999986544432110       01122567899999999886  5667778889999999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.98  E-value=1.6e-30  Score=249.35  Aligned_cols=308  Identities=17%  Similarity=0.200  Sum_probs=188.1

Q ss_pred             CceEEEecCCCCCC------------------CChhhh--cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCc
Q 040206            1 KTIKTQVKTCNISE------------------FPDILR--TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNV   60 (347)
Q Consensus         1 ~l~~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   60 (347)
                      +|+.|+|++|.++.                  +|+.+.  ++++|++|++++|.+.+.+|..+..+  ++|+.|++++|.
T Consensus       449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L--~~L~~L~Ls~N~  526 (876)
T 4ecn_A          449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL--PELQSLNIACNR  526 (876)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC--SSCCEEECTTCT
T ss_pred             CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC--CCCCEEECcCCC
Confidence            36777777777776                  777655  77777777777777777777766654  777777777776


Q ss_pred             -CCC--CCC---------CCCCCCcEEEccCCCCCccCC----CCCCCccEEEcccCcccccCCccccCCCCccEEEccc
Q 040206           61 -LTS--IDH---------LPWKNLQYLTLDSNLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN  124 (347)
Q Consensus        61 -l~~--~~~---------~~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  124 (347)
                       +++  ++.         ..+++|++|++++|.+...+.    ..+++|++|++++|.+. .+| .+..+++|+.|++++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDY  604 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCS
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcC
Confidence             654  221         234577777777777763332    12467777777777776 455 666777777777777


Q ss_pred             CcccccCCcccCCcc-ccEEECCCCccccccCccCCCCCC--ccEEEccCCcccCCCcc---ccc--cCCCCcEEEccCC
Q 040206          125 NSLSGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGCN--LTSLRLSGNHLEGPLPP---SLI--NCVNLQFLDVGNN  196 (347)
Q Consensus       125 ~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~---~l~--~~~~L~~L~l~~n  196 (347)
                      |.+...+.....+++ |+.|++++|.+. .+|..+.....  |+.|++++|.+....|.   .+.  .+++|+.|++++|
T Consensus       605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N  683 (876)
T 4ecn_A          605 NQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN  683 (876)
T ss_dssp             SCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred             CccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence            776644434444555 777777777665 55555544433  66666666666533221   111  2235666666666


Q ss_pred             cccCCCCccccCCCCCCeEEecCCccccCcCcccccc--------CCcEEEcccCcccccCChhhh--cc----------
Q 040206          197 NLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANS--------TLEILDMRMNKFSGSLPQNIC--KK----------  256 (347)
Q Consensus       197 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--------~L~~L~L~~~~~~~~~~~~~~--~~----------  256 (347)
                      .+....+..+..+++|+.|++++|.+.......+...        +|+.|+|++|.++ .+|..+.  ..          
T Consensus       684 ~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~  762 (876)
T 4ecn_A          684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSY  762 (876)
T ss_dssp             CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCS
T ss_pred             cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCC
Confidence            6653222223355666666666665553332222211        5666666666555 3444332  11          


Q ss_pred             ccccCCCcCccCCCCCcEEEccC------CccCCccchhhhhccCCCEEEcccceeecccCCccc
Q 040206          257 LCFGPLPPSLVNCQYLEVLDVGN------NQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRS  315 (347)
Q Consensus       257 ~~~~~l~~~~~~~~~L~~L~L~~------n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~  315 (347)
                      .....+|..+..+++|+.|+|++      |.+.+..|..+..+++|+.|+|++|++ +.+|..+.
T Consensus       763 N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~  826 (876)
T 4ecn_A          763 NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT  826 (876)
T ss_dssp             SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence            12224666677788888888865      666667777778888888888888888 66776543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=2.1e-30  Score=225.24  Aligned_cols=290  Identities=21%  Similarity=0.218  Sum_probs=221.4

Q ss_pred             ceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEcc
Q 040206            2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLD   78 (347)
Q Consensus         2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~   78 (347)
                      ++.++++++.+..+|..+.  ++++.|++++|++++..+..+..  +++|++|++++|.++.+..   ..+++|++|+++
T Consensus        33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKN--LKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTT--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhcc--CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            5778888888888887554  78999999999998555545654  4999999999999888744   567889999999


Q ss_pred             CCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccc--cCCc-ccCCccccEEECCCCccccccC
Q 040206           79 SNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG--QIPQ-CLGNSTLETLDLGMNNFQGSIP  155 (347)
Q Consensus        79 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~  155 (347)
                      +|.+........++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+. +..+++|+.|++++|.+. ..|
T Consensus       109 ~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~  187 (330)
T 1xku_A          109 KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP  187 (330)
T ss_dssp             SSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCC
T ss_pred             CCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCC
Confidence            999887777777899999999999987777778899999999999988753  2333 335678999999998887 445


Q ss_pred             ccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCC
Q 040206          156 QTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTL  235 (347)
Q Consensus       156 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  235 (347)
                      ..+.  ++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.........++|
T Consensus       188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L  265 (330)
T 1xku_A          188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI  265 (330)
T ss_dssp             SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred             cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence            4433  78999999999888777778888899999999999888766677888889999999999888544444445889


Q ss_pred             cEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC--ccchhhhhccCCCEEEcccce
Q 040206          236 EILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD--TFLYWLDVLLQLQVLILRSNR  305 (347)
Q Consensus       236 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~l~L~~n~  305 (347)
                      ++|++++|.+++..+..++..       ......+.++.+++++|.+..  ..+..+..+++++.++|++|+
T Consensus       266 ~~L~l~~N~i~~~~~~~f~~~-------~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          266 QVVYLHNNNISAIGSNDFCPP-------GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CEEECCSSCCCCCCTTSSSCS-------SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CEEECCCCcCCccChhhcCCc-------ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            999999998886544433110       111235678889999988753  455677778888899988874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.98  E-value=8.6e-31  Score=246.09  Aligned_cols=148  Identities=16%  Similarity=0.135  Sum_probs=83.8

Q ss_pred             ccCCCCCCccEEEccCCcccCCCc-cccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccC-cCccc-cc
Q 040206          156 QTNAKGCNLTSLRLSGNHLEGPLP-PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP-IPECL-AN  232 (347)
Q Consensus       156 ~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~-~~  232 (347)
                      ..+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+ ..
T Consensus       393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  472 (606)
T 3vq2_A          393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT  472 (606)
T ss_dssp             CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence            444455555555555555554433 3455556666666666666555555566666666666666665542 23322 23


Q ss_pred             cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCC
Q 040206          233 STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGK  312 (347)
Q Consensus       233 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~  312 (347)
                      ++|+.|++++|.+++..             |..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|.
T Consensus       473 ~~L~~L~Ls~n~l~~~~-------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~  538 (606)
T 3vq2_A          473 TNLTFLDLSKCQLEQIS-------------WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG  538 (606)
T ss_dssp             TTCCEEECTTSCCCEEC-------------TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred             CCCCEEECCCCcCCccC-------------hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence            56666666666666433             334556666666666666666655566666666666666666665 3444


Q ss_pred             ccccc
Q 040206          313 LRSRW  317 (347)
Q Consensus       313 ~~~~~  317 (347)
                      .+..+
T Consensus       539 ~~~~l  543 (606)
T 3vq2_A          539 ILQHF  543 (606)
T ss_dssp             CGGGS
T ss_pred             hHhhh
Confidence            44443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.98  E-value=2.1e-30  Score=248.51  Aligned_cols=306  Identities=20%  Similarity=0.254  Sum_probs=233.0

Q ss_pred             CceEEEecCCCCC-CCChhhhcCCCccEEeccCCc-ccc-cCChhhhhc-----CCCcccEEEcCCCcCCCCCC----CC
Q 040206            1 KTIKTQVKTCNIS-EFPDILRTQHQLEWLDLSKNQ-IRG-RIPSWMWDI-----GVHTLQFLILSQNVLTSIDH----LP   68 (347)
Q Consensus         1 ~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~----~~   68 (347)
                      +|++|+|++|.+. .+|..+.++++|+.|++++|+ +++ .+|..+..+     .+++|+.|++++|.++.++.    ..
T Consensus       492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~  571 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK  571 (876)
T ss_dssp             TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT
T ss_pred             CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhc
Confidence            4789999999866 899999999999999999998 887 788877654     23599999999999998876    67


Q ss_pred             CCCCcEEEccCCCCCccCCCC--CCCccEEEcccCcccccCCccccCCCC-ccEEEcccCcccccCCcccC-C--ccccE
Q 040206           69 WKNLQYLTLDSNLLQGSLPDL--PPHMVQLLISNNSLTGEIPSSFCNLSS-IQYLNLSNNSLSGQIPQCLG-N--STLET  142 (347)
Q Consensus        69 ~~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~-~--~~L~~  142 (347)
                      +++|+.|++++|.+...+ .+  +++|++|++++|.+. .+|..+..+++ |+.|++++|.+... +..+. .  ++|+.
T Consensus       572 L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~  648 (876)
T 4ecn_A          572 MVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGS  648 (876)
T ss_dssp             CTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEE
T ss_pred             CCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCE
Confidence            899999999999998443 33  488999999999999 77878889998 99999999998844 44433 2  24999


Q ss_pred             EECCCCccccccCccC---C--CCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccC--------C
Q 040206          143 LDLGMNNFQGSIPQTN---A--KGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGN--------S  209 (347)
Q Consensus       143 L~l~~~~~~~~~~~~~---~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~--------~  209 (347)
                      |++++|.+.+..|...   .  ..++|+.|++++|.++......+..+++|+.|++++|.+. .+|..+..        +
T Consensus       649 L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl  727 (876)
T 4ecn_A          649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT  727 (876)
T ss_dssp             EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTG
T ss_pred             EECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccccc
Confidence            9999998865444322   1  3357889999998888433333457788888888888887 34443322        2


Q ss_pred             CCCCeEEecCCccccCcCccc--cccCCcEEEcccCcccccCChhhhcc-----------------ccccCCCcCccCCC
Q 040206          210 TRLSFLDVGNNSLSGPIPECL--ANSTLEILDMRMNKFSGSLPQNICKK-----------------LCFGPLPPSLVNCQ  270 (347)
Q Consensus       210 ~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~  270 (347)
                      ++|+.|++++|.++.......  ..++|+.|+|++|.+.+ +|..+...                 ...+.+|..+..++
T Consensus       728 ~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~  806 (876)
T 4ecn_A          728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP  806 (876)
T ss_dssp             GGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred             CCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence            378888888888884433333  45788888888888886 66555442                 11456778899999


Q ss_pred             CCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCcc
Q 040206          271 YLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLR  314 (347)
Q Consensus       271 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~  314 (347)
                      +|+.|+|++|.+. ..|..+.  ++|+.|+|++|++..--+..+
T Consensus       807 ~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          807 SLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             SCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred             CCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence            9999999999995 4554443  699999999999876544443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=1.1e-30  Score=244.38  Aligned_cols=283  Identities=25%  Similarity=0.218  Sum_probs=226.1

Q ss_pred             ceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEc
Q 040206            2 TIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTL   77 (347)
Q Consensus         2 l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l   77 (347)
                      ++.++++++.+..+|. .+.++++|++|++++|.+.+..+..+..  +++|++|++++|.++.++.   ..+++|++|++
T Consensus        53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC--CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            5788899999998875 6788999999999999998665656664  4999999999999988876   56789999999


Q ss_pred             cCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCcc---------------
Q 040206           78 DSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST---------------  139 (347)
Q Consensus        78 ~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~---------------  139 (347)
                      ++|.+...+...   +++|++|++++|.+....+..+..+++|++|++++|.+......  .+++               
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~~L~l~~n~l~~l~  208 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLSTLA  208 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG--GCTTCSEEECCSSCCSEEE
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh--hhhhhhhhhcccCcccccc
Confidence            999998776544   58899999999999988888899999999999999988754322  2334               


Q ss_pred             ----ccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeE
Q 040206          140 ----LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFL  215 (347)
Q Consensus       140 ----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  215 (347)
                          |+.|++++|.+....+.   ..++|+.|++++|.++.  +..+..+++|+.|++++|.+.+..|..+..+++|+.|
T Consensus       209 ~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  283 (597)
T 3oja_B          209 IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  283 (597)
T ss_dssp             CCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             CCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence                45555555554422221   13578888888888874  3678889999999999999988888899999999999


Q ss_pred             EecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccC
Q 040206          216 DVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQ  295 (347)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~  295 (347)
                      ++++|.+++........++|+.|++++|.+.              .+|..+..+++|+.|++++|.+.+..   +..+++
T Consensus       284 ~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~--------------~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~  346 (597)
T 3oja_B          284 YISNNRLVALNLYGQPIPTLKVLDLSHNHLL--------------HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHT  346 (597)
T ss_dssp             ECTTSCCCEEECSSSCCTTCCEEECCSSCCC--------------CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCC
T ss_pred             ECCCCCCCCCCcccccCCCCcEEECCCCCCC--------------ccCcccccCCCCCEEECCCCCCCCcC---hhhcCC
Confidence            9999998875544444589999999999988              35556778899999999999998653   567889


Q ss_pred             CCEEEcccceeeccc
Q 040206          296 LQVLILRSNRFWGPI  310 (347)
Q Consensus       296 L~~l~L~~n~~~~~~  310 (347)
                      |+.|++++|++.+..
T Consensus       347 L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          347 LKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CSEEECCSSCEEHHH
T ss_pred             CCEEEeeCCCCCChh
Confidence            999999999998753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=239.83  Aligned_cols=312  Identities=23%  Similarity=0.214  Sum_probs=222.0

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccC
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDS   79 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~   79 (347)
                      ++++++++.++.+|..+.  ++|++|++++|.+.+..+..+..  +++|++|++++|.++.+.+   ..+++|++|++++
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILS--LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTT--CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccc--cccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            689999999999998666  99999999999999655566664  4999999999999998854   6789999999999


Q ss_pred             CCCCccCCCCCCCccEEEcccCccccc-CCccccCCCCccEEEcccCcccccCCcccCCccc--cEEECCCCcc--cccc
Q 040206           80 NLLQGSLPDLPPHMVQLLISNNSLTGE-IPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTL--ETLDLGMNNF--QGSI  154 (347)
Q Consensus        80 ~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~  154 (347)
                      |.+...+...+++|++|++++|.+... .|..++.+++|++|++++|.+...  ....+++|  +.|++++|.+  ....
T Consensus        79 N~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~l~~n~l~~~~~~  156 (520)
T 2z7x_B           79 NKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--SVLPIAHLNISKVLLVLGETYGEKED  156 (520)
T ss_dssp             SCCCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG--GGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred             CceeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh--hccccccceeeEEEeecccccccccc
Confidence            999976666679999999999999863 578999999999999999998752  23345566  9999999877  4444


Q ss_pred             CccCCCCC------------------------------------------------------------------------
Q 040206          155 PQTNAKGC------------------------------------------------------------------------  162 (347)
Q Consensus       155 ~~~~~~~~------------------------------------------------------------------------  162 (347)
                      |..+..+.                                                                        
T Consensus       157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~  236 (520)
T 2z7x_B          157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS  236 (520)
T ss_dssp             TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH
T ss_pred             cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH
Confidence            44443321                                                                        


Q ss_pred             -----------CccEEEccCCcccCCCcccc-------------------------------------------------
Q 040206          163 -----------NLTSLRLSGNHLEGPLPPSL-------------------------------------------------  182 (347)
Q Consensus       163 -----------~L~~L~l~~~~~~~~~~~~l-------------------------------------------------  182 (347)
                                 +|++|++++|.++...|..+                                                 
T Consensus       237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~  316 (520)
T 2z7x_B          237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH  316 (520)
T ss_dssp             HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred             HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc
Confidence                       56667776666554344333                                                 


Q ss_pred             ----ccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccC--cCc-cccccCCcEEEcccCcccccCChhhh-
Q 040206          183 ----INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP--IPE-CLANSTLEILDMRMNKFSGSLPQNIC-  254 (347)
Q Consensus       183 ----~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~-  254 (347)
                          ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.  .+. ....++|+.|++++|.+.+.+|.... 
T Consensus       317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence                4567788888888888776777788888888888888887742  222 22347888888888888865554311 


Q ss_pred             ccccc-----------cCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCc-cccceeeee
Q 040206          255 KKLCF-----------GPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKL-RSRWSGHFI  322 (347)
Q Consensus       255 ~~~~~-----------~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~-~~~~~~~~~  322 (347)
                      ....+           +.+|..+.  ++|++|++++|.++. .+..+..+++|+.|++++|++++ +|.. +..+..+..
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~  472 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQK  472 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccE
Confidence            11000           11111111  567777777777764 44444477777777777777774 4443 444444444


Q ss_pred             eE
Q 040206          323 VR  324 (347)
Q Consensus       323 ~~  324 (347)
                      +.
T Consensus       473 L~  474 (520)
T 2z7x_B          473 IW  474 (520)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=9.4e-30  Score=242.11  Aligned_cols=222  Identities=23%  Similarity=0.266  Sum_probs=158.9

Q ss_pred             CceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEE
Q 040206            1 KTIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLT   76 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~   76 (347)
                      ++++|++++|.++.++. +|.++++|++|++++|.+.+..|..+...  ++|++|++++|.++.++.   ..+++|++|+
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL--PMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcc--cCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            47899999999997775 79999999999999999997777777655  999999999999988876   4678999999


Q ss_pred             ccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc---CCccccEEECCCCcc
Q 040206           77 LDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL---GNSTLETLDLGMNNF  150 (347)
Q Consensus        77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~L~~L~l~~~~~  150 (347)
                      +++|.+....+..   +++|++|++++|.+....+..+.++++|++|++++|.+....+..+   ..++|+.|++++|.+
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            9999988765433   4889999999999987778888899999999999998876555432   346788888888877


Q ss_pred             ccccCccCCCC---------------------------CCccEEEccCCcccCCCccccccCC--CCcEEEccCCcccCC
Q 040206          151 QGSIPQTNAKG---------------------------CNLTSLRLSGNHLEGPLPPSLINCV--NLQFLDVGNNNLSGP  201 (347)
Q Consensus       151 ~~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~  201 (347)
                      ....+..+..+                           ++|++|++++|.+....+..+..++  +|+.|++++|.+.+.
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence            65555444333                           2344444444444433444444432  255555555555544


Q ss_pred             CCccccCCCCCCeEEecCCcccc
Q 040206          202 IPECLGNSTRLSFLDVGNNSLSG  224 (347)
Q Consensus       202 ~~~~l~~~~~L~~L~l~~~~~~~  224 (347)
                      .+..+..+++|+.|++++|.+.+
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~  286 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQH  286 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSE
T ss_pred             CcccccCcccccEeeCCCCccCc
Confidence            44455555555555555555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=1.1e-29  Score=241.75  Aligned_cols=315  Identities=21%  Similarity=0.244  Sum_probs=196.1

Q ss_pred             ceEEEecCCCCCCC-ChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcC-----------------------
Q 040206            2 TIKTQVKTCNISEF-PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILS-----------------------   57 (347)
Q Consensus         2 l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-----------------------   57 (347)
                      |++|++++|.+..+ |.++.++++|++|++++|.+.+..+..+...  ++|+.|+++                       
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~  327 (680)
T 1ziw_A          250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL--FNVRYLNLKRSFTKQSISLASLPKIDDFSFQW  327 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTC--TTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred             CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCC--CCccEEeccchhhhcccccccccccChhhccc
Confidence            67777777777743 4567778888888888877775555444322  444444444                       


Q ss_pred             ----------CCcCCCCCC---CCCCCCcEEEccCCCCCc--cCCCC-----CCCccEEEcccCcccccCCccccCCCCc
Q 040206           58 ----------QNVLTSIDH---LPWKNLQYLTLDSNLLQG--SLPDL-----PPHMVQLLISNNSLTGEIPSSFCNLSSI  117 (347)
Q Consensus        58 ----------~~~l~~~~~---~~~~~L~~L~l~~~~~~~--~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~l~~L  117 (347)
                                +|.++.+..   ..+++|++|++++|.+..  .....     .++|+.|++++|.+....+..+..+++|
T Consensus       328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  407 (680)
T 1ziw_A          328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL  407 (680)
T ss_dssp             CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence                      444433332   233444444444443211  00000     1356666666666666666777778888


Q ss_pred             cEEEcccCcccccCC-c-ccCCccccEEECCCCccccccCccCCCCCCccEEEccCCccc--CCCccccccCCCCcEEEc
Q 040206          118 QYLNLSNNSLSGQIP-Q-CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE--GPLPPSLINCVNLQFLDV  193 (347)
Q Consensus       118 ~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l  193 (347)
                      +.|++++|.+....+ . +..+++|++|++++|.+....+..+..+++|+++++++|.+.  ...|..+..+++|+.|++
T Consensus       408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L  487 (680)
T 1ziw_A          408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL  487 (680)
T ss_dssp             CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred             CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence            888888887764332 2 225567788888887776555666666677777777666654  245556667777777777


Q ss_pred             cCCcccCCCCccccCCCCCCeEEecCCccccCcCc---------cccccCCcEEEcccCcccccCCh-hhhcc-------
Q 040206          194 GNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE---------CLANSTLEILDMRMNKFSGSLPQ-NICKK-------  256 (347)
Q Consensus       194 ~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~L~L~~~~~~~~~~~-~~~~~-------  256 (347)
                      ++|.+.+..+..+..+++|+.|++++|.+++....         ....++|+.|++++|.+. .+|. .+...       
T Consensus       488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~  566 (680)
T 1ziw_A          488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIID  566 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeE
Confidence            77777665556667777777777777766543211         122256677777777666 3332 22221       


Q ss_pred             ---ccccCCCc-CccCCCCCcEEEccCCccCCccchhhh-hccCCCEEEcccceeecccC--Ccccccee
Q 040206          257 ---LCFGPLPP-SLVNCQYLEVLDVGNNQIDDTFLYWLD-VLLQLQVLILRSNRFWGPIG--KLRSRWSG  319 (347)
Q Consensus       257 ---~~~~~l~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~l~L~~n~~~~~~~--~~~~~~~~  319 (347)
                         .....+|. .|..+++|+.|++++|.+++..+..+. .+++|+.+++++|++.+.++  .++..|..
T Consensus       567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~  636 (680)
T 1ziw_A          567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN  636 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred             CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence               22234443 467888899999999988887777776 78899999999999988775  56665543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=1.3e-29  Score=235.79  Aligned_cols=313  Identities=21%  Similarity=0.196  Sum_probs=229.9

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccC
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDS   79 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~   79 (347)
                      +++++++++++.+|..+.  ++|+.|++++|.+++..+..+..  +++|++|++++|.++.+..   ..+++|++|++++
T Consensus        34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISF--LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTT--CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhcc--CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            689999999999998665  89999999999999655566664  4999999999999998865   5678999999999


Q ss_pred             CCCCccCCCCCCCccEEEcccCccccc-CCccccCCCCccEEEcccCcccccCCcccCCccc--cEEECCCCcc--cccc
Q 040206           80 NLLQGSLPDLPPHMVQLLISNNSLTGE-IPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTL--ETLDLGMNNF--QGSI  154 (347)
Q Consensus        80 ~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~  154 (347)
                      |.+.......+++|++|++++|.+... .|..++++++|++|++++|.+...  .....++|  +.|++++|.+  ....
T Consensus       110 N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~  187 (562)
T 3a79_B          110 NRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGE  187 (562)
T ss_dssp             SCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred             CcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccC
Confidence            999977766779999999999999864 357899999999999999988753  22334445  9999999877  4333


Q ss_pred             CccCCCC-------------------------------------------------------------------------
Q 040206          155 PQTNAKG-------------------------------------------------------------------------  161 (347)
Q Consensus       155 ~~~~~~~-------------------------------------------------------------------------  161 (347)
                      +..+..+                                                                         
T Consensus       188 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~  267 (562)
T 3a79_B          188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV  267 (562)
T ss_dssp             CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred             cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence            3333221                                                                         


Q ss_pred             --------CCccEEEccCCcccCCCcccc---------------------------------------------------
Q 040206          162 --------CNLTSLRLSGNHLEGPLPPSL---------------------------------------------------  182 (347)
Q Consensus       162 --------~~L~~L~l~~~~~~~~~~~~l---------------------------------------------------  182 (347)
                              ++|++|++++|.++...|..+                                                   
T Consensus       268 ~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~  347 (562)
T 3a79_B          268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV  347 (562)
T ss_dssp             HHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred             HHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc
Confidence                    156677777776654444333                                                   


Q ss_pred             --ccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcC--c-cccccCCcEEEcccCcccccCChhhhc-c
Q 040206          183 --INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIP--E-CLANSTLEILDMRMNKFSGSLPQNICK-K  256 (347)
Q Consensus       183 --~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~-~~~~~~L~~L~L~~~~~~~~~~~~~~~-~  256 (347)
                        ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++...  . ....++|+.|++++|.+.+.+|..... .
T Consensus       348 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l  427 (562)
T 3a79_B          348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA  427 (562)
T ss_dssp             CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred             CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence              567899999999999998888899999999999999999986432  2 234489999999999999756653211 1


Q ss_pred             ccc-------cCC-CcCccCC-CCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCc-cccceeeeee
Q 040206          257 LCF-------GPL-PPSLVNC-QYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKL-RSRWSGHFIV  323 (347)
Q Consensus       257 ~~~-------~~l-~~~~~~~-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~-~~~~~~~~~~  323 (347)
                      ..+       ..+ ...+..+ ++|++|++++|.++..+.. +..+++|+.|++++|++++ +|.. +..+..+..+
T Consensus       428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L  502 (562)
T 3a79_B          428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYI  502 (562)
T ss_dssp             TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTT-TTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCE
T ss_pred             ccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChh-hcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEE
Confidence            000       000 0111222 5777888888877753333 4477888888888888874 5544 5555444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=4.4e-30  Score=239.56  Aligned_cols=126  Identities=21%  Similarity=0.222  Sum_probs=90.9

Q ss_pred             ceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEc
Q 040206            2 TIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTL   77 (347)
Q Consensus         2 l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l   77 (347)
                      +++|++++|.++.++ .+|.++++|++|++++|.+.+..+..+.  ++++|++|++++|.++.++.   ..+++|++|++
T Consensus        30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc--CchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            677888888888554 4788888888888888888754444554  34888888888888777664   45677888888


Q ss_pred             cCCCCCccCC---CCCCCccEEEcccCccccc-CCccccCCCCccEEEcccCcccc
Q 040206           78 DSNLLQGSLP---DLPPHMVQLLISNNSLTGE-IPSSFCNLSSIQYLNLSNNSLSG  129 (347)
Q Consensus        78 ~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~  129 (347)
                      ++|.+.....   ..+++|++|++++|.+... .|..+.++++|++|++++|.+..
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence            8887765432   3347788888888877753 46777777888888877776554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=2.5e-29  Score=228.51  Aligned_cols=293  Identities=25%  Similarity=0.292  Sum_probs=131.7

Q ss_pred             ceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCC
Q 040206            2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSN   80 (347)
Q Consensus         2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~   80 (347)
                      ++.|++.++.+..+|. +..+++|++|++++|.+.+ +++ +.  .+++|++|++++|.++.++. ..+++|++|++++|
T Consensus        48 l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~-~~~-~~--~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n  122 (466)
T 1o6v_A           48 VTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD-ITP-LK--NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN  122 (466)
T ss_dssp             CCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GT--TCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             ccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCC-chh-hh--ccccCCEEECCCCccccChhhcCCCCCCEEECCCC
Confidence            4455555555555543 4555555555555555542 222 22  22555555555555444433 34444555555554


Q ss_pred             CCCccCC-CCCCCccEEEcccCcccccC-------------------CccccCCCCccEEEcccCcccccCCcccCCccc
Q 040206           81 LLQGSLP-DLPPHMVQLLISNNSLTGEI-------------------PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTL  140 (347)
Q Consensus        81 ~~~~~~~-~~~~~L~~L~l~~~~~~~~~-------------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L  140 (347)
                      .+....+ ..+++|++|++++|.+....                   ...+..+++|+.|++++|.+... +....+++|
T Consensus       123 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L  201 (466)
T 1o6v_A          123 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNL  201 (466)
T ss_dssp             CCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTC
T ss_pred             CCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hhhccCCCC
Confidence            4443221 11244444444444333110                   01133344444455544444322 112233344


Q ss_pred             cEEECCCCccccccC--------------------ccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccC
Q 040206          141 ETLDLGMNNFQGSIP--------------------QTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG  200 (347)
Q Consensus       141 ~~L~l~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  200 (347)
                      +.|++++|.+....+                    ..+..+++|++|++++|.+....+  +..+++|+.|++++|.+.+
T Consensus       202 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  279 (466)
T 1o6v_A          202 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN  279 (466)
T ss_dssp             SEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC
T ss_pred             CEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc
Confidence            444444443332211                    223344455555555554442211  4445555555555555543


Q ss_pred             CCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhcc--------ccccCCCcCccCCCCC
Q 040206          201 PIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKK--------LCFGPLPPSLVNCQYL  272 (347)
Q Consensus       201 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~L  272 (347)
                      ..+  +..+++|+.|++++|.+.+..+ ....++|+.|++++|.+.+..|......        .....+ ..+..+++|
T Consensus       280 ~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L  355 (466)
T 1o6v_A          280 ISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-SSLANLTNI  355 (466)
T ss_dssp             CGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTC
T ss_pred             ccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc-hhhccCCCC
Confidence            222  4455555555555555543322 2233556666666665554322110000        011112 234555666


Q ss_pred             cEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206          273 EVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       273 ~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~  308 (347)
                      +.|++++|.+.+..+  +..+++|+.|++++|++++
T Consensus       356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            666666666655444  5566666666666666665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=1.5e-29  Score=234.95  Aligned_cols=80  Identities=26%  Similarity=0.278  Sum_probs=40.7

Q ss_pred             ceEEEecCCCCCCC-ChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEc
Q 040206            2 TIKTQVKTCNISEF-PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTL   77 (347)
Q Consensus         2 l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l   77 (347)
                      +++|++++|.++.+ |.+|.++++|++|++++|.+++..+..+..+  ++|++|++++|.++.++.   ..+++|++|++
T Consensus        28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL--GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccc--ccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            45555555555533 3455555555555555555554333344322  555555555555554443   34455555555


Q ss_pred             cCCCCC
Q 040206           78 DSNLLQ   83 (347)
Q Consensus        78 ~~~~~~   83 (347)
                      ++|.+.
T Consensus       106 s~n~l~  111 (549)
T 2z81_A          106 MGNPYQ  111 (549)
T ss_dssp             TTCCCS
T ss_pred             CCCccc
Confidence            555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=235.56  Aligned_cols=225  Identities=20%  Similarity=0.234  Sum_probs=159.3

Q ss_pred             CcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccC---CcccCCccccEEECCCC
Q 040206           72 LQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQI---PQCLGNSTLETLDLGMN  148 (347)
Q Consensus        72 L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~  148 (347)
                      |++|++++|.+.......+++|++|++++|.+....+.  ..+++|++|++++|.+....   .....+++|+.|++++|
T Consensus       306 L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n  383 (570)
T 2z63_A          306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN  383 (570)
T ss_dssp             CSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC
T ss_pred             ccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC
Confidence            33333333333333333345555555555554433222  56677777887777766442   22335667888888888


Q ss_pred             ccccccCccCCCCCCccEEEccCCcccCCCc-cccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc-cCc
Q 040206          149 NFQGSIPQTNAKGCNLTSLRLSGNHLEGPLP-PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS-GPI  226 (347)
Q Consensus       149 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~  226 (347)
                      .+....+ .+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. +..
T Consensus       384 ~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  462 (570)
T 2z63_A          384 GVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  462 (570)
T ss_dssp             SEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             ccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence            7764333 37778888888888888775544 45778888888888888887777778888888888888888876 234


Q ss_pred             Cccc-cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccce
Q 040206          227 PECL-ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR  305 (347)
Q Consensus       227 ~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~  305 (347)
                      +..+ ..++|+.|++++|.+++.             .|..+..+++|++|++++|.+++.++..+..+++|+.|++++|+
T Consensus       463 p~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          463 PDIFTELRNLTFLDLSQCQLEQL-------------SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEE-------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hhhhhcccCCCEEECCCCccccC-------------ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence            4333 347888899988888854             34567889999999999999998888888899999999999999


Q ss_pred             eecccCC
Q 040206          306 FWGPIGK  312 (347)
Q Consensus       306 ~~~~~~~  312 (347)
                      +.+.+|.
T Consensus       530 ~~~~~~~  536 (570)
T 2z63_A          530 WDCSCPR  536 (570)
T ss_dssp             BCCCTTT
T ss_pred             ccCCCcc
Confidence            9998874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=245.90  Aligned_cols=293  Identities=18%  Similarity=0.157  Sum_probs=207.2

Q ss_pred             CceEEEecCCCCCC-CChhhhcCCCccEEeccCCcccccC-ChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEE
Q 040206            1 KTIKTQVKTCNISE-FPDILRTQHQLEWLDLSKNQIRGRI-PSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYL   75 (347)
Q Consensus         1 ~l~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L   75 (347)
                      ++++|+|++|.++. .|..|.++++|++|++++|...+.+ |..+.  .+++|++|++++|.++.+.+   ..+++|++|
T Consensus        25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR--NLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS--SCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc--CCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            47899999999994 4678999999999999999666666 44554  45999999999999988755   567899999


Q ss_pred             EccCCCCCccC-----CCCCCCccEEEcccCcccccCC-ccccCCCCccEEEcccCcccccCCcccC-C--ccccEEECC
Q 040206           76 TLDSNLLQGSL-----PDLPPHMVQLLISNNSLTGEIP-SSFCNLSSIQYLNLSNNSLSGQIPQCLG-N--STLETLDLG  146 (347)
Q Consensus        76 ~l~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~--~~L~~L~l~  146 (347)
                      ++++|.+.+..     ...+++|++|++++|.+....+ ..++++++|++|++++|.+....+..+. .  ++|+.|+++
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            99999988643     2335899999999999986554 5789999999999999988765554442 2  567777777


Q ss_pred             CCccccccCccCCCCCC------ccEEEccCCcccCCCccccc------------------------------------c
Q 040206          147 MNNFQGSIPQTNAKGCN------LTSLRLSGNHLEGPLPPSLI------------------------------------N  184 (347)
Q Consensus       147 ~~~~~~~~~~~~~~~~~------L~~L~l~~~~~~~~~~~~l~------------------------------------~  184 (347)
                      +|.+....+..+..+++      |+.|++++|.++...+..+.                                    .
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence            77766555554444443      77777777754432222211                                    1


Q ss_pred             --CCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccC
Q 040206          185 --CVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGP  261 (347)
Q Consensus       185 --~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~  261 (347)
                        .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .++|+.|++++|.+.+.             
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------  329 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-------------  329 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-------------
T ss_pred             cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-------------
Confidence              25677777777777666666777777777777777777665554333 36777777777777643             


Q ss_pred             CCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206          262 LPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       262 l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~  308 (347)
                      .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++
T Consensus       330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            23455666666666766666666555556666666666666666553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=1.7e-28  Score=223.13  Aligned_cols=214  Identities=27%  Similarity=0.292  Sum_probs=153.6

Q ss_pred             hcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCC-CCCCCccEEE
Q 040206           20 RTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLP-DLPPHMVQLL   97 (347)
Q Consensus        20 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~   97 (347)
                      ..+++++.|+++++.+. .++. +.  .+++|++|++++|.++.++. ..+++|++|++++|.+....+ ..+++|++|+
T Consensus        43 ~~l~~l~~L~l~~~~i~-~l~~-~~--~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  118 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIK-SIDG-VE--YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT  118 (466)
T ss_dssp             HHHHTCCEEECCSSCCC-CCTT-GG--GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             hHhccccEEecCCCCCc-cCcc-hh--hhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence            45789999999999987 5654 44  45999999999999998875 778999999999999886543 3458999999


Q ss_pred             cccCcccccCCccccCCCCccEEEcccCcccccCC--------------------cccCCccccEEECCCCccccccCcc
Q 040206           98 ISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP--------------------QCLGNSTLETLDLGMNNFQGSIPQT  157 (347)
Q Consensus        98 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------------~~~~~~~L~~L~l~~~~~~~~~~~~  157 (347)
                      +++|.+....+  +..+++|++|++++|.+.....                    ....+++|+.|++++|.+...  ..
T Consensus       119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~  194 (466)
T 1o6v_A          119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SV  194 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred             CCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hh
Confidence            99999986533  8899999999999998764321                    122456899999999987633  34


Q ss_pred             CCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcE
Q 040206          158 NAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEI  237 (347)
Q Consensus       158 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  237 (347)
                      +..+++|++|++++|.+....+  ++.+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+ ....++|+.
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~  269 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE  269 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred             hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCE
Confidence            6778889999999888774433  56667777777777766532  245555666666666665553332 222244555


Q ss_pred             EEcccCccc
Q 040206          238 LDMRMNKFS  246 (347)
Q Consensus       238 L~L~~~~~~  246 (347)
                      |++++|.+.
T Consensus       270 L~l~~n~l~  278 (466)
T 1o6v_A          270 LKLGANQIS  278 (466)
T ss_dssp             EECCSSCCC
T ss_pred             EECCCCccC
Confidence            555555444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=2.1e-28  Score=221.02  Aligned_cols=281  Identities=21%  Similarity=0.222  Sum_probs=199.1

Q ss_pred             CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCC
Q 040206            1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSN   80 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~   80 (347)
                      ++++|++++|.++.+| .+.++++|++|++++|.+++ ++  +.  .+++|++|++++|.++.++...+++|++|++++|
T Consensus        43 ~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~--~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           43 TLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD--LS--QNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTN  116 (457)
T ss_dssp             TCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC--CT--TCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSS
T ss_pred             CCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec--cc--cCCCCCEEECcCCCCceeecCCCCcCCEEECCCC
Confidence            4789999999999887 58999999999999999985 44  44  4499999999999999988788899999999999


Q ss_pred             CCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206           81 LLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK  160 (347)
Q Consensus        81 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  160 (347)
                      .+.+.....+++|++|++++|.++..   .++.+++|++|++++|...+.. ....+++|+.|++++|.+.. .+  +..
T Consensus       117 ~l~~l~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l~--l~~  189 (457)
T 3bz5_A          117 KLTKLDVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-LD--VSQ  189 (457)
T ss_dssp             CCSCCCCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-CC--CTT
T ss_pred             cCCeecCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce-ec--ccc
Confidence            98877656678999999999988864   3677888888888888433232 33455678888888887764 33  666


Q ss_pred             CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc---------
Q 040206          161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA---------  231 (347)
Q Consensus       161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---------  231 (347)
                      +++|+.|++++|.++..   .++.+++|+.|++++|.+.+ +|  +..+++|+.|++++|.+++.....+.         
T Consensus       190 l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~  263 (457)
T 3bz5_A          190 NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ  263 (457)
T ss_dssp             CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence            77788888877777643   36677777777777777775 33  66777777777777776654322111         


Q ss_pred             ---------------------ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhh
Q 040206          232 ---------------------NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWL  290 (347)
Q Consensus       232 ---------------------~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~  290 (347)
                                           .++|+.|++++|...+.+|...   .....+  .++.+++|++|++++|.+++. +  +
T Consensus       264 n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~---~~L~~L--~l~~~~~L~~L~L~~N~l~~l-~--l  335 (457)
T 3bz5_A          264 TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA---AGITEL--DLSQNPKLVYLYLNNTELTEL-D--V  335 (457)
T ss_dssp             CCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTT---CCCSCC--CCTTCTTCCEEECTTCCCSCC-C--C
T ss_pred             CCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCC---CcceEe--chhhcccCCEEECCCCccccc-c--c
Confidence                                 1233333333333332222111   111122  256777888888888888774 2  6


Q ss_pred             hhccCCCEEEcccceeec
Q 040206          291 DVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       291 ~~l~~L~~l~L~~n~~~~  308 (347)
                      ..+++|+.|++++|++.+
T Consensus       336 ~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          336 SHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             TTCTTCSEEECCSSCCCB
T ss_pred             ccCCcCcEEECCCCCCCC
Confidence            778888888888888776

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=8e-29  Score=215.27  Aligned_cols=265  Identities=20%  Similarity=0.199  Sum_probs=224.1

Q ss_pred             CceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccC
Q 040206            1 KTIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDS   79 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~   79 (347)
                      .++.|++++|.++.++. ++.++++|++|++++|.+++..|..+...  ++|++|++++|.++.++...+++|++|++++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~  130 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL--VKLERLYLSKNQLKELPEKMPKTLQELRVHE  130 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC--TTCCEEECCSSCCSBCCSSCCTTCCEEECCS
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC--CCCCEEECCCCcCCccChhhcccccEEECCC
Confidence            47899999999997775 89999999999999999997667777754  9999999999999999887779999999999


Q ss_pred             CCCCccCC---CCCCCccEEEcccCcccc--cCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCcccccc
Q 040206           80 NLLQGSLP---DLPPHMVQLLISNNSLTG--EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSI  154 (347)
Q Consensus        80 ~~~~~~~~---~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  154 (347)
                      |.+.....   ..+++|++|++++|.+..  ..+..+..+++|++|++++|.+...+....  ++|++|++++|.+....
T Consensus       131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVD  208 (330)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEEC
T ss_pred             CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccC
Confidence            99987654   345899999999999863  667788999999999999999986544332  78999999999998777


Q ss_pred             CccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc---
Q 040206          155 PQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA---  231 (347)
Q Consensus       155 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---  231 (347)
                      +..+..+++|++|++++|.++...+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++.....+.   
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~  287 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG  287 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc
Confidence            888999999999999999998777778999999999999999998 6778899999999999999999876655543   


Q ss_pred             ----ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCc
Q 040206          232 ----NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ  281 (347)
Q Consensus       232 ----~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~  281 (347)
                          ...++.+++++|.+...           ...|..|..+..++.+++++|+
T Consensus       288 ~~~~~~~l~~l~l~~N~~~~~-----------~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          288 YNTKKASYSGVSLFSNPVQYW-----------EIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCTTSCCCSEEECCSSSSCGG-----------GSCGGGGTTCCCGGGEEC----
T ss_pred             cccccccccceEeecCccccc-----------ccCccccccccceeEEEecccC
Confidence                26789999999988632           1234568889999999999885

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.2e-29  Score=218.55  Aligned_cols=247  Identities=26%  Similarity=0.393  Sum_probs=180.9

Q ss_pred             CCccEEeccCCcccc--cCChhhhhcCCCcccEEEcCC-CcCCCCCC---CCCCCCcEEEccCCCCCccCCCCCCCccEE
Q 040206           23 HQLEWLDLSKNQIRG--RIPSWMWDIGVHTLQFLILSQ-NVLTSIDH---LPWKNLQYLTLDSNLLQGSLPDLPPHMVQL   96 (347)
Q Consensus        23 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L   96 (347)
                      .+++.|+++++.+.+  .+|..+..+  ++|++|++++ |.+.+..+   ..+++                     |++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l--~~L~~L~L~~~n~l~~~~p~~l~~l~~---------------------L~~L  106 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANL--PYLNFLYIGGINNLVGPIPPAIAKLTQ---------------------LHYL  106 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGC--TTCSEEEEEEETTEESCCCGGGGGCTT---------------------CSEE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCC--CCCCeeeCCCCCcccccCChhHhcCCC---------------------CCEE
Confidence            567888888888876  677776654  7777777763 55443222   22333                     4444


Q ss_pred             EcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccCccCCCCC-CccEEEccCCcc
Q 040206           97 LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHL  174 (347)
Q Consensus        97 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~  174 (347)
                      ++++|.+....|..+..+++|++|++++|.+....+..+ .+++|++|++++|.+.+..|..+..++ +|++|++++|.+
T Consensus       107 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             EEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            444444444555666677777777777777664444333 456777777777777666777777776 788888888888


Q ss_pred             cCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhh
Q 040206          175 EGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNIC  254 (347)
Q Consensus       175 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~  254 (347)
                      +...|..+..++ |+.|++++|.+.+..+..+..+++|+.|++++|.+++..+.....++|++|++++|.+++.      
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~------  259 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT------  259 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEEC------
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCc------
Confidence            767777787776 8999999998887778888888999999999998886666655558899999999999865      


Q ss_pred             ccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceee
Q 040206          255 KKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFW  307 (347)
Q Consensus       255 ~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~  307 (347)
                             +|..+..+++|++|++++|.+++..|.. ..+++|+.+++++|+..
T Consensus       260 -------~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          260 -------LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             -------CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred             -------CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence                   4556788899999999999998777765 78899999999999843

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.2e-28  Score=212.64  Aligned_cols=264  Identities=22%  Similarity=0.180  Sum_probs=222.0

Q ss_pred             CceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccC
Q 040206            1 KTIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDS   79 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~   79 (347)
                      +++.|++++|.+..++ .++.++++|++|++++|++++..|..+...  ++|++|++++|.++.++...+++|++|++++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~  132 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL--RKLQKLYISKNHLVEIPPNLPSSLVELRIHD  132 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC--TTCCEEECCSSCCCSCCSSCCTTCCEEECCS
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc--CCCCEEECCCCcCCccCccccccCCEEECCC
Confidence            4789999999999664 589999999999999999997667777654  9999999999999999887779999999999


Q ss_pred             CCCCccCCC---CCCCccEEEcccCcccc--cCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCcccccc
Q 040206           80 NLLQGSLPD---LPPHMVQLLISNNSLTG--EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSI  154 (347)
Q Consensus        80 ~~~~~~~~~---~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  154 (347)
                      |.+......   .+++|++|++++|.+..  ..+..+..+ +|+.|++++|.+...+...  .++|++|++++|.+....
T Consensus       133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~~  209 (332)
T 2ft3_A          133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIE  209 (332)
T ss_dssp             SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCCCCCC
T ss_pred             CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc--cCCCCEEECCCCcCCccC
Confidence            999876553   35899999999999863  667778777 9999999999998654433  268999999999998777


Q ss_pred             CccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc---
Q 040206          155 PQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA---  231 (347)
Q Consensus       155 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---  231 (347)
                      +..+..+++|++|++++|.++...+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++......+.   
T Consensus       210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  288 (332)
T 2ft3_A          210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG  288 (332)
T ss_dssp             TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence            788999999999999999999777778999999999999999998 6778899999999999999999876655443   


Q ss_pred             ----ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCc
Q 040206          232 ----NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ  281 (347)
Q Consensus       232 ----~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~  281 (347)
                          ...++.+++++|.+...           +..+.+|..+++|+.+++++|+
T Consensus       289 ~~~~~~~l~~L~l~~N~~~~~-----------~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          289 FGVKRAYYNGISLFNNPVPYW-----------EVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCSSSCCBSEEECCSSSSCGG-----------GSCGGGGTTBCCSTTEEC----
T ss_pred             cccccccccceEeecCccccc-----------ccCcccccccchhhhhhccccc
Confidence                25689999999988731           1234568889999999999885

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=4.5e-28  Score=235.20  Aligned_cols=306  Identities=20%  Similarity=0.206  Sum_probs=244.6

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCc-CCCCCC---CCCCCCcEEEcc
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNV-LTSIDH---LPWKNLQYLTLD   78 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~---~~~~~L~~L~l~   78 (347)
                      +..+.++++++.+|.   -.++++.|++++|.+++..+..+..+  ++|+.|++++|. +..++.   ..+++|++|+++
T Consensus         7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l--~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFL--EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSC--CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCccc--ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            356788899999997   45899999999999997777777654  999999999994 444433   678999999999


Q ss_pred             CCCCCccCCCC---CCCccEEEcccCcccccCCcc--ccCCCCccEEEcccCcccccCCc--ccCCccccEEECCCCccc
Q 040206           79 SNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSS--FCNLSSIQYLNLSNNSLSGQIPQ--CLGNSTLETLDLGMNNFQ  151 (347)
Q Consensus        79 ~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~  151 (347)
                      +|.+....+..   +++|++|++++|.+.+..+..  +..+++|++|++++|.+....+.  +..+++|++|++++|.+.
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            99998765544   489999999999998655544  88999999999999999866542  346789999999999988


Q ss_pred             cccCccCCCC--CCccEEEccCCcccCCCccccccCCC------CcEEEccCCcccCCCCcccc----------------
Q 040206          152 GSIPQTNAKG--CNLTSLRLSGNHLEGPLPPSLINCVN------LQFLDVGNNNLSGPIPECLG----------------  207 (347)
Q Consensus       152 ~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~n~~~~~~~~~l~----------------  207 (347)
                      ...+..+..+  ++|+.|++++|.+....+..+..+++      |+.|++++|.+.+..+..+.                
T Consensus       162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence            7777777766  79999999999998777766666555      99999999976543333221                


Q ss_pred             --------------------C--CCCCCeEEecCCccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCc
Q 040206          208 --------------------N--STRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPP  264 (347)
Q Consensus       208 --------------------~--~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~  264 (347)
                                          .  .++|+.|++++|.+.+..+..+.. ++|+.|++++|.+.+.             .+.
T Consensus       242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-------------~~~  308 (844)
T 3j0a_A          242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-------------ADE  308 (844)
T ss_dssp             CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-------------CTT
T ss_pred             cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-------------ChH
Confidence                                1  267899999999887666555443 8899999999998864             344


Q ss_pred             CccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccccceeeeeeEee
Q 040206          265 SLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHFIVRTV  326 (347)
Q Consensus       265 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~~~~~~~~~  326 (347)
                      .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.....+..+...
T Consensus       309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls  370 (844)
T 3j0a_A          309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR  370 (844)
T ss_dssp             TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEE
T ss_pred             HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECC
Confidence            67889999999999999998888889999999999999999987666666666666555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=1.8e-27  Score=211.59  Aligned_cols=266  Identities=21%  Similarity=0.210  Sum_probs=204.3

Q ss_pred             cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCCCCCccCCCC---CCCcc
Q 040206           21 TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNLLQGSLPDL---PPHMV   94 (347)
Q Consensus        21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~~~~~~~~~---~~~L~   94 (347)
                      .+++++.++++++.+. .+|..++. .+++|++|++++|.++.++.   ..+++|++|++++|.+....+..   +++|+
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLD-SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHH-HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchh-hCChhHhc-ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            5689999999999998 66766554 55999999999999998865   56789999999999998776554   58999


Q ss_pred             EEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCCc
Q 040206           95 QLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNH  173 (347)
Q Consensus        95 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  173 (347)
                      +|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|++|++++|.+....   +..+++|+++++++|.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccc
Confidence            99999999996666667899999999999999987766645 5679999999999886432   3344555555555554


Q ss_pred             ccC------------------CCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccC
Q 040206          174 LEG------------------PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NST  234 (347)
Q Consensus       174 ~~~------------------~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~  234 (347)
                      ++.                  ..+.  ...++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+..+. .++
T Consensus       198 l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (390)
T 3o6n_A          198 LSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR  273 (390)
T ss_dssp             CSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred             ccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence            431                  1111  2235677777777777643  4677788888888888887766554443 378


Q ss_pred             CcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeeccc
Q 040206          235 LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI  310 (347)
Q Consensus       235 L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~  310 (347)
                      |+.|++++|.+++              ++..+..+++|++|++++|.+.+ .+..+..+++|+.|++++|+++...
T Consensus       274 L~~L~L~~n~l~~--------------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          274 LERLYISNNRLVA--------------LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             CCEEECCSSCCCE--------------EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CCEEECCCCcCcc--------------cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC
Confidence            8888888888773              44556778999999999999985 4555788999999999999997653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=6.5e-27  Score=211.32  Aligned_cols=283  Identities=19%  Similarity=0.154  Sum_probs=190.0

Q ss_pred             CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCC
Q 040206            1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSN   80 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~   80 (347)
                      +|++|++++|.++.+|  +.++++|++|++++|.+++ ++  +.  .+++|++|++++|.++.++...+++|++|++++|
T Consensus        65 ~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~--~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           65 GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VT--PLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARN  137 (457)
T ss_dssp             TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CT--TCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTS
T ss_pred             CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee--cC--CCCcCCEEECCCCcCCeecCCCCCcCCEEECCCC
Confidence            4678888888888776  7888888888888888875 33  43  3488888888888888877777788888888888


Q ss_pred             CCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206           81 LLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK  160 (347)
Q Consensus        81 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  160 (347)
                      .+++.....+++|++|++++|......  .+..+++|+.|++++|.+....  ...+++|+.|++++|.+...   .+..
T Consensus       138 ~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~  210 (457)
T 3bz5_A          138 TLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQ  210 (457)
T ss_dssp             CCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTT
T ss_pred             ccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---cccc
Confidence            887765555677777777777433222  3556677777777777666532  33445666666666665532   2555


Q ss_pred             CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCcc-----------------------------ccCCCC
Q 040206          161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPEC-----------------------------LGNSTR  211 (347)
Q Consensus       161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-----------------------------l~~~~~  211 (347)
                      +++|++|++++|+++. .|  ++.+++|+.|++++|.+.+..+..                             +..+++
T Consensus       211 l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~  287 (457)
T 3bz5_A          211 NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK  287 (457)
T ss_dssp             CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTT
T ss_pred             CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccccccccc
Confidence            5666666666666653 23  555566666666666554332221                             234466


Q ss_pred             CCeEEecCCccccCcCc---------cccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCcc
Q 040206          212 LSFLDVGNNSLSGPIPE---------CLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI  282 (347)
Q Consensus       212 L~~L~l~~~~~~~~~~~---------~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i  282 (347)
                      |+.|++++|...+..+.         ....++|+.|++++|.+++              ++  ++.|++|+.|++++|++
T Consensus       288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~--------------l~--l~~l~~L~~L~l~~N~l  351 (457)
T 3bz5_A          288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE--------------LD--VSHNTKLKSLSCVNAHI  351 (457)
T ss_dssp             CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC--------------CC--CTTCTTCSEEECCSSCC
T ss_pred             CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc--------------cc--cccCCcCcEEECCCCCC
Confidence            77777777654332211         1122689999999999984              32  77899999999999999


Q ss_pred             CCccc-hhh----------hhccCCCEEEcccceeecccCCcccc
Q 040206          283 DDTFL-YWL----------DVLLQLQVLILRSNRFWGPIGKLRSR  316 (347)
Q Consensus       283 ~~~~~-~~~----------~~l~~L~~l~L~~n~~~~~~~~~~~~  316 (347)
                      ++... ..+          +.+..|..+++++|.++|.+|..+..
T Consensus       352 ~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          352 QDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             CBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             CCccccccccccCCcEEecceeeecCccccccCcEEEEcChhHhc
Confidence            86321 001          12356788999999999999876544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=4.8e-29  Score=218.65  Aligned_cols=277  Identities=22%  Similarity=0.146  Sum_probs=190.5

Q ss_pred             cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCCCCCccCCCC---CCCcc
Q 040206           21 TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNLLQGSLPDL---PPHMV   94 (347)
Q Consensus        21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~~~~~~~~~---~~~L~   94 (347)
                      .|+.....+.+++.++ .+|..+.    ++|++|++++|.++.++.   ..+++|++|++++|.+.+..+..   +++|+
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            4455555666666665 5554432    456666666666665544   34566666666666666543332   36677


Q ss_pred             EEEcccCcccccCCccccCCCCccEEEcccCcccccCC-c-ccCCccccEEECCCC-ccccccCccCCCCCCccEEEccC
Q 040206           95 QLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP-Q-CLGNSTLETLDLGMN-NFQGSIPQTNAKGCNLTSLRLSG  171 (347)
Q Consensus        95 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~  171 (347)
                      +|++++|.+....+..+..+++|++|++++|.+..... . +..+++|++|++++| .+....+..+..+++|++|++++
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            77777777765544457777788888888777775544 2 235667888888777 35545566777788888888888


Q ss_pred             CcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc----ccCCcEEEcccCcccc
Q 040206          172 NHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA----NSTLEILDMRMNKFSG  247 (347)
Q Consensus       172 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~~L~~L~L~~~~~~~  247 (347)
                      |.++...+..+..+++|++|++++|.+.......+..+++|+.|++++|.+++.....+.    ...++.++++++.+.+
T Consensus       184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~  263 (353)
T 2z80_A          184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD  263 (353)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred             CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence            887766677777888888888888877643333445577888888888887754433222    2578888888888775


Q ss_pred             cCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206          248 SLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG  311 (347)
Q Consensus       248 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~  311 (347)
                      ....         .+|..+..+++|++|++++|.++..+...+..+++|+.|++++|++.+.+|
T Consensus       264 ~~l~---------~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          264 ESLF---------QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHH---------HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cchh---------hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            3211         345567889999999999999997666667899999999999999998876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=7.2e-27  Score=220.48  Aligned_cols=126  Identities=21%  Similarity=0.209  Sum_probs=98.5

Q ss_pred             ceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEc
Q 040206            2 TIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTL   77 (347)
Q Consensus         2 l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l   77 (347)
                      +++|+|++|.++.+| .+|.++++|++|++++|++++..+..|.  ++++|++|++++|.++.++.   ..+++|++|++
T Consensus        54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            688999999999776 4789999999999999998844444454  44899999999998888875   56788999999


Q ss_pred             cCCCCCccCCC---CCCCccEEEcccCccccc-CCccccCCCCccEEEcccCcccc
Q 040206           78 DSNLLQGSLPD---LPPHMVQLLISNNSLTGE-IPSSFCNLSSIQYLNLSNNSLSG  129 (347)
Q Consensus        78 ~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~  129 (347)
                      ++|.++.....   .+++|++|++++|.+... .+..+..+++|++|++++|.+..
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            99888765543   347888999988888743 46677788888888888876543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=7.3e-27  Score=210.80  Aligned_cols=271  Identities=25%  Similarity=0.325  Sum_probs=132.9

Q ss_pred             ceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCC
Q 040206            2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSN   80 (347)
Q Consensus         2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~   80 (347)
                      |++|++++|.++.+| .+.++++|++|++++|+++ .+|..+     ++|++|++++|.++.++. ..+++|++|++++|
T Consensus       133 L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~~~-----~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          133 LEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK-KLPDLP-----PSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  205 (454)
T ss_dssp             CCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-CCCCCC-----TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc-ccCCCc-----ccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence            444555555555444 2455555555555555544 233221     345555555555554433 34455555555555


Q ss_pred             CCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206           81 LLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK  160 (347)
Q Consensus        81 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  160 (347)
                      .+.+ .+..+++|++|++++|.+. ..+ .+..+++|++|++++|.+...+.   ..++|+.|++++|.+.+ .|..   
T Consensus       206 ~l~~-l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~~---  275 (454)
T 1jl5_A          206 SLKK-LPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPEL---  275 (454)
T ss_dssp             CCSS-CCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCCC---
T ss_pred             cCCc-CCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cCcc---
Confidence            5543 2223345566666666555 333 25556666666666665553221   12456666666665542 3322   


Q ss_pred             CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCC-CCCCeEEecCCccccCcCccccccCCcEEE
Q 040206          161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNS-TRLSFLDVGNNSLSGPIPECLANSTLEILD  239 (347)
Q Consensus       161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  239 (347)
                      +++|+++++++|.++.. +.   ..++|+.|++++|.+.+     +..+ ++|+.|++++|.+++. +..  .++|+.|+
T Consensus       276 ~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~l-p~~--~~~L~~L~  343 (454)
T 1jl5_A          276 PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIEL-PAL--PPRLERLI  343 (454)
T ss_dssp             CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSCC-CCC--CTTCCEEE
T ss_pred             cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCccccc-ccc--CCcCCEEE
Confidence            24566666666655421 11   12456666666666552     1122 4677777777776642 222  35777777


Q ss_pred             cccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC--ccchhhhhc-------------cCCCEEEcccc
Q 040206          240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD--TFLYWLDVL-------------LQLQVLILRSN  304 (347)
Q Consensus       240 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l-------------~~L~~l~L~~n  304 (347)
                      +++|.++              .+|.   .+++|++|++++|.+.+  ..|..+..+             ++|+.|++++|
T Consensus       344 L~~N~l~--------------~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N  406 (454)
T 1jl5_A          344 ASFNHLA--------------EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN  406 (454)
T ss_dssp             CCSSCCS--------------CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------
T ss_pred             CCCCccc--------------cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence            7777776              3454   36789999999999887  556666666             78999999999


Q ss_pred             eeec--ccCCccccce
Q 040206          305 RFWG--PIGKLRSRWS  318 (347)
Q Consensus       305 ~~~~--~~~~~~~~~~  318 (347)
                      ++.+  .+|..+..+.
T Consensus       407 ~l~~~~~iP~sl~~L~  422 (454)
T 1jl5_A          407 PLREFPDIPESVEDLR  422 (454)
T ss_dssp             ----------------
T ss_pred             cCCccccchhhHhhee
Confidence            9987  7776655543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=8e-28  Score=223.30  Aligned_cols=191  Identities=20%  Similarity=0.198  Sum_probs=151.3

Q ss_pred             EEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCCC
Q 040206            5 TQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNL   81 (347)
Q Consensus         5 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~   81 (347)
                      .+.+++.++.+|..+.  ++|++|++++|.+++..+..+..  +++|++|++++|.++.++.   ..+++|++|++++|.
T Consensus        10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   85 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRA--CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH   85 (549)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCccccccccCC--CCccEEECcCCccCccChhhhhc--CCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence            5677888999998665  89999999999999766777764  4999999999999998875   567899999999999


Q ss_pred             CCccCCC---CCCCccEEEcccCccccc-CCccccCCCCccEEEcccCc-ccccCCc-ccCCccccEEECCCCccccccC
Q 040206           82 LQGSLPD---LPPHMVQLLISNNSLTGE-IPSSFCNLSSIQYLNLSNNS-LSGQIPQ-CLGNSTLETLDLGMNNFQGSIP  155 (347)
Q Consensus        82 ~~~~~~~---~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~  155 (347)
                      +.+..+.   .+++|++|++++|.+... .+..+.++++|++|++++|. +....+. +..+++|++|++++|.+....|
T Consensus        86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            9876643   458999999999999853 45678999999999999998 4444433 3467799999999999987888


Q ss_pred             ccCCCCCCccEEEccCCcccCCCccc-cccCCCCcEEEccCCcccC
Q 040206          156 QTNAKGCNLTSLRLSGNHLEGPLPPS-LINCVNLQFLDVGNNNLSG  200 (347)
Q Consensus       156 ~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~  200 (347)
                      ..+..+++|++++++++... ..+.. +..+++|+.|++++|.+.+
T Consensus       166 ~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          166 QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence            88888888888888777665 22222 2446667777777666553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=8.6e-27  Score=218.04  Aligned_cols=266  Identities=21%  Similarity=0.210  Sum_probs=206.0

Q ss_pred             cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCCCCCccCCCC---CCCcc
Q 040206           21 TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNLLQGSLPDL---PPHMV   94 (347)
Q Consensus        21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~~~~~~~~~---~~~L~   94 (347)
                      .+++++.++++++.+. .+|..++. .+++|+.|++++|.++.++.   ..+++|++|++++|.+....+..   +++|+
T Consensus        49 ~l~~l~~l~l~~~~l~-~lp~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMR-KLPAALLD-SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEES-EECTHHHH-HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCC-CcCHHHHc-cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            4688999999999998 56666554 55999999999999998865   56789999999999998876544   58999


Q ss_pred             EEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCCc
Q 040206           95 QLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNH  173 (347)
Q Consensus        95 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  173 (347)
                      +|++++|.+....+..|..+++|++|++++|.+....+..+ .+++|+.|++++|.+....   +..+++|+.+++++|.
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence            99999999997666678999999999999999988777655 5679999999999887432   3344556666665554


Q ss_pred             ccC------------------CCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccC
Q 040206          174 LEG------------------PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NST  234 (347)
Q Consensus       174 ~~~------------------~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~  234 (347)
                      ++.                  ..+.  ...++|+.|++++|.+.+  +..+..+++|+.|++++|.+.+..+..+. .++
T Consensus       204 l~~l~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  279 (597)
T 3oja_B          204 LSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR  279 (597)
T ss_dssp             CSEEECCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred             cccccCCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccC
Confidence            431                  1111  112467777777777764  35677788888888888887766555443 377


Q ss_pred             CcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeeccc
Q 040206          235 LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI  310 (347)
Q Consensus       235 L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~  310 (347)
                      |+.|++++|.+++              +|..+..+++|+.|+|++|.+.. .+..+..+++|+.|++++|++.+..
T Consensus       280 L~~L~Ls~N~l~~--------------l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          280 LERLYISNNRLVA--------------LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             CCEEECTTSCCCE--------------EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CCEEECCCCCCCC--------------CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC
Confidence            8888888888774              45566778999999999999985 5556788999999999999998754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=1.1e-26  Score=215.94  Aligned_cols=268  Identities=26%  Similarity=0.223  Sum_probs=221.4

Q ss_pred             CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCC
Q 040206            1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSN   80 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~   80 (347)
                      +++.|+++++.++.+|..+.  ++|+.|++++|+++ .+|.     .+++|++|++++|.++.++. .+++|++|++++|
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~-----~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N  111 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQLTSLPV-LPPGLLELSIFSN  111 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC-----CCTTCCEEEECSCCCSCCCC-CCTTCCEEEECSC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC-----cCCCCCEEEcCCCcCCcCCC-CCCCCCEEECcCC
Confidence            36789999999999998665  89999999999998 6665     23899999999999999888 7899999999999


Q ss_pred             CCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206           81 LLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK  160 (347)
Q Consensus        81 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  160 (347)
                      .++.... .+++|+.|++++|.++. ++.   .+++|++|++++|.+...+.   ...+|+.|++++|.+. .+|   ..
T Consensus       112 ~l~~l~~-~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~l~---~~  179 (622)
T 3g06_A          112 PLTHLPA-LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLT-SLP---ML  179 (622)
T ss_dssp             CCCCCCC-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCC---CC
T ss_pred             cCCCCCC-CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCC-CCc---cc
Confidence            9987655 77999999999999985 443   34899999999999886432   3468999999999987 455   45


Q ss_pred             CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEc
Q 040206          161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDM  240 (347)
Q Consensus       161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L  240 (347)
                      +++|+.|++++|.++. ++.   ..++|+.|++++|.+.. ++.   .+++|+.|++++|.+++..   ...++|+.|++
T Consensus       180 ~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~L  248 (622)
T 3g06_A          180 PSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMV  248 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEEC
T ss_pred             CCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEEC
Confidence            6899999999999884 333   34789999999999884 343   3578999999999998643   23379999999


Q ss_pred             ccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccccce
Q 040206          241 RMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWS  318 (347)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~  318 (347)
                      ++|.++              .+|.   .+++|+.|++++|.++. .|..+..+++|+.|+|++|++.+..|..+..+.
T Consensus       249 s~N~L~--------------~lp~---~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          249 SGNRLT--------------SLPM---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CSSCCS--------------CCCC---CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCCCCC--------------cCCc---ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            999998              3554   56889999999999985 566789999999999999999988776555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.3e-27  Score=203.92  Aligned_cols=218  Identities=20%  Similarity=0.277  Sum_probs=115.8

Q ss_pred             EEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-----CCCCCCcEEEcc
Q 040206            4 KTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-----LPWKNLQYLTLD   78 (347)
Q Consensus         4 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~   78 (347)
                      .++.+++.++.+|..+.  ++|++|++++|.+. .++...+. .+++|++|++++|.++.+..     ..+++       
T Consensus        11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~-------   79 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQ-SLPHGVFD-KLTQLTKLSLSSNGLSFKGCCSQSDFGTTS-------   79 (306)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCCEEECCSSCCC-CCCTTTTT-TCTTCSEEECCSSCCCEEEEEEHHHHSCSC-------
T ss_pred             EEEcCCCCcccCCCCCC--CCCCEEECCCCccC-ccCHhHhh-ccccCCEEECCCCccCcccCcccccccccc-------
Confidence            45555666666665333  46666666666665 44443322 33566666666555543311     22333       


Q ss_pred             CCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCC--cccCCccccEEECCCCccccccCc
Q 040206           79 SNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP--QCLGNSTLETLDLGMNNFQGSIPQ  156 (347)
Q Consensus        79 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~  156 (347)
                                    |++|++++|.+. ..+..+..+++|++|++++|.+....+  ....+++|++|++++|.+....+.
T Consensus        80 --------------L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  144 (306)
T 2z66_A           80 --------------LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG  144 (306)
T ss_dssp             --------------CCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT
T ss_pred             --------------cCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh
Confidence                          444444444443 233445666677777777666654433  222445666666666665545555


Q ss_pred             cCCCCCCccEEEccCCcccC-CCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccC
Q 040206          157 TNAKGCNLTSLRLSGNHLEG-PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NST  234 (347)
Q Consensus       157 ~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~  234 (347)
                      .+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+. .++
T Consensus       145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  224 (306)
T 2z66_A          145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS  224 (306)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred             hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence            55556666666666665543 3445555666666666666666554455555566666666666655543332222 245


Q ss_pred             CcEEEcccCcccc
Q 040206          235 LEILDMRMNKFSG  247 (347)
Q Consensus       235 L~~L~L~~~~~~~  247 (347)
                      |+.|++++|.+.+
T Consensus       225 L~~L~L~~N~l~~  237 (306)
T 2z66_A          225 LQVLDYSLNHIMT  237 (306)
T ss_dssp             CCEEECTTSCCCB
T ss_pred             CCEeECCCCCCcc
Confidence            5555555555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=1.6e-27  Score=205.22  Aligned_cols=236  Identities=27%  Similarity=0.394  Sum_probs=201.8

Q ss_pred             CCCcEEEccCCCCCc--cCCCC---CCCccEEEccc-CcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccE
Q 040206           70 KNLQYLTLDSNLLQG--SLPDL---PPHMVQLLISN-NSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLET  142 (347)
Q Consensus        70 ~~L~~L~l~~~~~~~--~~~~~---~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~  142 (347)
                      .+++.|+++++.+.+  ..+..   +++|++|++++ |.+.+..|..+..+++|++|++++|.+.+..+..+ .+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467888888888775  33332   37899999985 88887889999999999999999999986555544 6789999


Q ss_pred             EECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCC-CCcEEEccCCcccCCCCccccCCCCCCeEEecCCc
Q 040206          143 LDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCV-NLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNS  221 (347)
Q Consensus       143 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  221 (347)
                      |++++|.+....|..+..+++|++|++++|.++...|..+..++ +|+.|++++|.+.+..|..+..+. |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            99999999888899999999999999999999877888899988 999999999999888888998887 9999999999


Q ss_pred             cccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEE
Q 040206          222 LSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLI  300 (347)
Q Consensus       222 ~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~  300 (347)
                      +.+..+..+.. ++|+.|++++|.+++.++              .+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  274 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG--------------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGG--------------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecC--------------cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence            98776665544 899999999999985422              366789999999999999988888899999999999


Q ss_pred             cccceeecccCCccccceeee
Q 040206          301 LRSNRFWGPIGKLRSRWSGHF  321 (347)
Q Consensus       301 L~~n~~~~~~~~~~~~~~~~~  321 (347)
                      +++|++++.+|.. ..+..+.
T Consensus       275 Ls~N~l~~~ip~~-~~l~~L~  294 (313)
T 1ogq_A          275 VSFNNLCGEIPQG-GNLQRFD  294 (313)
T ss_dssp             CCSSEEEEECCCS-TTGGGSC
T ss_pred             CcCCcccccCCCC-ccccccC
Confidence            9999999999986 4554443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.2e-27  Score=202.21  Aligned_cols=247  Identities=24%  Similarity=0.225  Sum_probs=195.8

Q ss_pred             cEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCC---CCCCccEEEcccCccccc--CCccccCCCCccEEEcccCc
Q 040206           52 QFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPD---LPPHMVQLLISNNSLTGE--IPSSFCNLSSIQYLNLSNNS  126 (347)
Q Consensus        52 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~  126 (347)
                      +.++++++.++.++....++|++|++++|.+......   .+++|++|++++|.+...  .+..+..+++|++|++++|.
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence            3455555555555554445666666666666544432   236677777777766522  24556678999999999999


Q ss_pred             ccccCCcccCCccccEEECCCCccccccC-ccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccC-CCCc
Q 040206          127 LSGQIPQCLGNSTLETLDLGMNNFQGSIP-QTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG-PIPE  204 (347)
Q Consensus       127 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~  204 (347)
                      +.........+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|.
T Consensus        90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  169 (306)
T 2z66_A           90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD  169 (306)
T ss_dssp             EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence            98766666678899999999999875544 578899999999999999987778889999999999999999975 5788


Q ss_pred             cccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccC
Q 040206          205 CLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID  283 (347)
Q Consensus       205 ~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~  283 (347)
                      .+..+++|+.|++++|.+++..+..+. .++|+.|++++|.+++..+             ..+..+++|++|++++|.+.
T Consensus       170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-------------FPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-------------GGGTTCTTCCEEECTTSCCC
T ss_pred             HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-------------hhccCcccCCEeECCCCCCc
Confidence            899999999999999999877665554 4899999999999985322             25778999999999999999


Q ss_pred             Cccchhhhhcc-CCCEEEcccceeecccC
Q 040206          284 DTFLYWLDVLL-QLQVLILRSNRFWGPIG  311 (347)
Q Consensus       284 ~~~~~~~~~l~-~L~~l~L~~n~~~~~~~  311 (347)
                      +..+..+..++ +|+.|++++|++.+...
T Consensus       237 ~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          237 TSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             BCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             ccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            88888888885 99999999999998654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=3.2e-26  Score=216.06  Aligned_cols=103  Identities=22%  Similarity=0.314  Sum_probs=82.3

Q ss_pred             CceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEE
Q 040206            1 KTIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLT   76 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~   76 (347)
                      +|++|+|++|.++.+| .+|.++++|++|++++|+++ .+|...+. ++++|++|++++|.++.++.   ..+++|++|+
T Consensus        77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~-~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~  154 (635)
T 4g8a_A           77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELN  154 (635)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhc-CCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence            4889999999999776 48999999999999999998 45544333 55999999999999988875   5678899999


Q ss_pred             ccCCCCCccC-C---CCCCCccEEEcccCcccc
Q 040206           77 LDSNLLQGSL-P---DLPPHMVQLLISNNSLTG  105 (347)
Q Consensus        77 l~~~~~~~~~-~---~~~~~L~~L~l~~~~~~~  105 (347)
                      +++|.+.... +   ..+++|++|++++|.++.
T Consensus       155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             cccCccccCCCchhhccchhhhhhcccCccccc
Confidence            9999886532 2   224788888888887654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3e-26  Score=194.81  Aligned_cols=226  Identities=21%  Similarity=0.177  Sum_probs=174.2

Q ss_pred             cEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCc-c
Q 040206           73 QYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNN-F  150 (347)
Q Consensus        73 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~-~  150 (347)
                      ++++.+++.+...+...++++++|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|++|++++|. +
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l   93 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence            445555555555555555666666666666665555667778888888888887776644444 45678888888886 6


Q ss_pred             ccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccc
Q 040206          151 QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL  230 (347)
Q Consensus       151 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  230 (347)
                      ....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+
T Consensus        94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  173 (285)
T 1ozn_A           94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF  173 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence            65557778888889999998888887767778888899999999998886666678888899999999998886555434


Q ss_pred             c-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecc
Q 040206          231 A-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP  309 (347)
Q Consensus       231 ~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~  309 (347)
                      . .++|+.|++++|.+.+.             .|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus       174 ~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          174 RGLHSLDRLLLHQNRVAHV-------------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEE-------------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cCccccCEEECCCCccccc-------------CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            3 47899999999988864             345678889999999999999987778889999999999999999876


Q ss_pred             cC
Q 040206          310 IG  311 (347)
Q Consensus       310 ~~  311 (347)
                      .+
T Consensus       241 ~~  242 (285)
T 1ozn_A          241 CR  242 (285)
T ss_dssp             GG
T ss_pred             CC
Confidence            54

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=9.3e-30  Score=231.31  Aligned_cols=246  Identities=22%  Similarity=0.224  Sum_probs=138.6

Q ss_pred             CceEEEecCCCCC-----CCChhhhcCCCccEEeccCCcccccCChhhhhcCCC----cccEEEcCCCcCCCCC------
Q 040206            1 KTIKTQVKTCNIS-----EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVH----TLQFLILSQNVLTSID------   65 (347)
Q Consensus         1 ~l~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~l~~~~------   65 (347)
                      ++++|++++|.+.     .++.++..+++|++|++++|.+.+..+..+.. .++    +|++|++++|.++...      
T Consensus        29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  107 (461)
T 1z7x_W           29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ-GLQTPSCKIQKLSLQNCCLTGAGCGVLSS  107 (461)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH-TTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH-HHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence            3567777777776     34566777777777777777776555555544 334    5777777777776432      


Q ss_pred             -CCCCCCCcEEEccCCCCCccCC--------CCCCCccEEEcccCcccccC----CccccCCCCccEEEcccCcccccCC
Q 040206           66 -HLPWKNLQYLTLDSNLLQGSLP--------DLPPHMVQLLISNNSLTGEI----PSSFCNLSSIQYLNLSNNSLSGQIP  132 (347)
Q Consensus        66 -~~~~~~L~~L~l~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~  132 (347)
                       ...+++|++|++++|.++....        ...++|++|++++|.+....    +..+..+++|++|++++|.+.....
T Consensus       108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  187 (461)
T 1z7x_W          108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV  187 (461)
T ss_dssp             HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence             1456777777777777653211        11245777777777666422    3445556777777777776653222


Q ss_pred             ccc------CCccccEEECCCCccccc----cCccCCCCCCccEEEccCCcccCCCcc-----ccccCCCCcEEEccCCc
Q 040206          133 QCL------GNSTLETLDLGMNNFQGS----IPQTNAKGCNLTSLRLSGNHLEGPLPP-----SLINCVNLQFLDVGNNN  197 (347)
Q Consensus       133 ~~~------~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~n~  197 (347)
                      ..+      ..++|++|++++|.+...    .+..+..+++|++|++++|.++.....     .+..+++|++|++++|.
T Consensus       188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~  267 (461)
T 1z7x_W          188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG  267 (461)
T ss_dssp             HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence            111      123666666666665432    234444556666666666665432111     11235566666666665


Q ss_pred             ccCC----CCccccCCCCCCeEEecCCccccCcCccccc------cCCcEEEcccCcccc
Q 040206          198 LSGP----IPECLGNSTRLSFLDVGNNSLSGPIPECLAN------STLEILDMRMNKFSG  247 (347)
Q Consensus       198 ~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~L~~L~L~~~~~~~  247 (347)
                      +.+.    ++..+..+++|++|++++|.+.+.....+..      ++|+.|++++|.+++
T Consensus       268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  327 (461)
T 1z7x_W          268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA  327 (461)
T ss_dssp             CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence            5532    3344455666666666666554332222111      355555555555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=3.2e-26  Score=198.27  Aligned_cols=219  Identities=19%  Similarity=0.233  Sum_probs=166.5

Q ss_pred             CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEcc
Q 040206            1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLD   78 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~   78 (347)
                      +++.|+++++.+..+|..+.++++|++|++++|.+. .+|..+..+  ++|++|++++|.++.++.  ..+++|++|+++
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l--~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF--AGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGG--TTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhcc--CCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            367889999999988888888999999999999888 788777655  889999999998887765  567888999988


Q ss_pred             CCCCCccCCCC------------CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECC
Q 040206           79 SNLLQGSLPDL------------PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLG  146 (347)
Q Consensus        79 ~~~~~~~~~~~------------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  146 (347)
                      +|...+..+..            +++|++|++++|.+. .+|..+..+++|++|++++|.+...++....+++|++|+++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence            87665544332            567788888887777 56666777778888888887777655554456677777777


Q ss_pred             CCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206          147 MNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       147 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                      +|.+....|..+..+++|++|++++|.+....|..+..+++|+.|++++|.+.+.+|..+..+++|+.+.+..+.+.
T Consensus       238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            77776677777777777777777777766667777777777777777777777777777777777777777655443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=2.5e-26  Score=207.35  Aligned_cols=228  Identities=25%  Similarity=0.254  Sum_probs=119.2

Q ss_pred             CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCc-------------ccEEEcCCCcCCCCCCC
Q 040206            1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHT-------------LQFLILSQNVLTSIDHL   67 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~l~~~~~~   67 (347)
                      .|++++++++.+..+|+.++++++|++|++++|.+.+.+|..+..+  .+             +++|+++++.+++++..
T Consensus        12 ~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l--~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~   89 (454)
T 1jl5_A           12 FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ--REMAVSRLRDCLDRQAHELELNNLGLSSLPEL   89 (454)
T ss_dssp             ----------------------CCHHHHHHHHHHHHHTSCTTSCCC--HHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred             cchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccc--hhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence            3688999999999999999999999999999999998888876643  33             36666666666665442


Q ss_pred             CCCCCcEEEccCCCCCccC-------------------CCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCccc
Q 040206           68 PWKNLQYLTLDSNLLQGSL-------------------PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS  128 (347)
Q Consensus        68 ~~~~L~~L~l~~~~~~~~~-------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  128 (347)
                       .++|++|++++|.+.+.+                   +..+++|++|++++|.+.. .| .+..+++|++|++++|.+.
T Consensus        90 -~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~  166 (454)
T 1jl5_A           90 -PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK  166 (454)
T ss_dssp             -CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred             -cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc
Confidence             245555555555554321                   1222455555555555553 33 3555666666666666555


Q ss_pred             ccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccC
Q 040206          129 GQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGN  208 (347)
Q Consensus       129 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~  208 (347)
                      ..+ ..  ..+|++|++++|.+.. .| .+..+++|+++++++|.++. .+..   .++|+.|++++|.+. .+| .+..
T Consensus       167 ~lp-~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~  235 (454)
T 1jl5_A          167 KLP-DL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQN  235 (454)
T ss_dssp             CCC-CC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTT
T ss_pred             ccC-CC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCC
Confidence            322 11  2356666666665553 33 35566666666666666552 2221   246666666666665 334 3666


Q ss_pred             CCCCCeEEecCCccccCcCccccccCCcEEEcccCcccc
Q 040206          209 STRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSG  247 (347)
Q Consensus       209 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  247 (347)
                      +++|+.|++++|.+++.. ..  .++|+.|++++|.+.+
T Consensus       236 l~~L~~L~l~~N~l~~l~-~~--~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          236 LPFLTTIYADNNLLKTLP-DL--PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CTTCCEEECCSSCCSSCC-SC--CTTCCEEECCSSCCSC
T ss_pred             CCCCCEEECCCCcCCccc-cc--ccccCEEECCCCcccc
Confidence            677777777777666422 21  2567777777776663

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.2e-25  Score=202.80  Aligned_cols=246  Identities=21%  Similarity=0.154  Sum_probs=192.2

Q ss_pred             cccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCc
Q 040206           50 TLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS  126 (347)
Q Consensus        50 ~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  126 (347)
                      ..+.++..+..++.++..-.++++.|++++|.+.......   +++|++|++++|.+..+.+..|.++++|++|++++|.
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            3567777777777777766677888888888877654433   4788888888888887777788888889999998888


Q ss_pred             ccccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCC-cccCCCccccccCCCCcEEEccCCcccCCCCc
Q 040206          127 LSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGN-HLEGPLPPSLINCVNLQFLDVGNNNLSGPIPE  204 (347)
Q Consensus       127 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~  204 (347)
                      +....+..+ .+++|++|++++|.+....+..+..+++|++|+++++ .+....+..+..+++|+.|++++|.+.. +| 
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-  201 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-  201 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-
Confidence            886666544 5678889999988887666677888889999999885 4443444567888899999999998873 33 


Q ss_pred             cccCCCCCCeEEecCCccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccC
Q 040206          205 CLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID  283 (347)
Q Consensus       205 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~  283 (347)
                      .+..+++|+.|++++|.+++..+..+.. ++|+.|++++|.+.+.             .+..|..+++|++|+|++|.++
T Consensus       202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI-------------ERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-------------CTTSSTTCTTCCEEECTTSCCC
T ss_pred             ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE-------------ChhhhcCCCCCCEEECCCCCCC
Confidence            4778888999999999888765554443 7899999999988864             3346788899999999999998


Q ss_pred             CccchhhhhccCCCEEEcccceeeccc
Q 040206          284 DTFLYWLDVLLQLQVLILRSNRFWGPI  310 (347)
Q Consensus       284 ~~~~~~~~~l~~L~~l~L~~n~~~~~~  310 (347)
                      ...+..+..+++|+.|+|++|++..+.
T Consensus       269 ~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          269 LLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             ccChhHhccccCCCEEEcCCCCccCCC
Confidence            888888888999999999999987654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.3e-25  Score=203.26  Aligned_cols=246  Identities=21%  Similarity=0.153  Sum_probs=196.1

Q ss_pred             ccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcc
Q 040206           51 LQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL  127 (347)
Q Consensus        51 L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  127 (347)
                      .+.++.++..++.++..-.+++++|++++|.+....+..   +++|++|++++|.+..+.+..|.++++|++|++++|.+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            467777777788777766678888888888887654433   47888888888888877778888899999999999988


Q ss_pred             cccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCC-cccCCCccccccCCCCcEEEccCCcccCCCCcc
Q 040206          128 SGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGN-HLEGPLPPSLINCVNLQFLDVGNNNLSGPIPEC  205 (347)
Q Consensus       128 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~  205 (347)
                      ....+..+ .+++|++|++++|.+....+..+..+++|++|++++| .+....+..+..+++|+.|++++|.+.+. + .
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~  213 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-N  213 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-C
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-c
Confidence            87766655 4678999999999888666677888899999999884 44444445678889999999999988743 3 5


Q ss_pred             ccCCCCCCeEEecCCccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206          206 LGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD  284 (347)
Q Consensus       206 l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~  284 (347)
                      +..+++|+.|++++|.+.+..+..+.. ++|+.|++++|.+.+.             .+..+..+++|+.|+|++|.+++
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI-------------ERNAFDGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE-------------CTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE-------------CHHHhcCCCCCCEEECCCCcCCc
Confidence            778889999999999888766655443 8899999999998864             34467888999999999999988


Q ss_pred             ccchhhhhccCCCEEEcccceeecccC
Q 040206          285 TFLYWLDVLLQLQVLILRSNRFWGPIG  311 (347)
Q Consensus       285 ~~~~~~~~l~~L~~l~L~~n~~~~~~~  311 (347)
                      ..+..+..+++|+.|+|++|++..+..
T Consensus       281 ~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          281 LPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             CCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             cChHHhccccCCCEEEccCCCcCCCCC
Confidence            777888889999999999999886644

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.8e-25  Score=190.12  Aligned_cols=217  Identities=23%  Similarity=0.218  Sum_probs=140.1

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccC
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDS   79 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~   79 (347)
                      +.++.+++.++.+|..+  .++|+.|++++|.+++..+..+..  +++|++|++++|.++.+..   ..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRA--CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHccc--CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            45777788888888644  478888888888888544455543  4888888888888877644   4567788888877


Q ss_pred             CC-CCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccccc
Q 040206           80 NL-LQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSI  154 (347)
Q Consensus        80 ~~-~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~  154 (347)
                      |. +....+..   +++|++|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+....
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            76 55442322   3666777777776665556666666667777776666665444433 3456666666666665444


Q ss_pred             CccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206          155 PQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       155 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                      +..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            445566666666666666665555556666666666666666666544455666666666666666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=3.2e-27  Score=203.84  Aligned_cols=250  Identities=20%  Similarity=0.158  Sum_probs=170.1

Q ss_pred             hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCCCCCCCccEE
Q 040206           18 ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLPDLPPHMVQL   96 (347)
Q Consensus        18 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L   96 (347)
                      .+..+++|+.|++++|++++..+..+...  ++|++|++++|.++.... ..+++|++|++                   
T Consensus        29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L-------------------   87 (317)
T 3o53_A           29 LRQSAWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLDLESLSTLRTLDL-------------------   87 (317)
T ss_dssp             HHTTGGGCSEEECTTSCCCCCCHHHHTTC--TTCCEEECTTSCCEEEEEETTCTTCCEEEC-------------------
T ss_pred             HhccCCCCCEEECcCCccCcCCHHHhhCC--CcCCEEECCCCcCCcchhhhhcCCCCEEEC-------------------
Confidence            34455667777777666664444444433  666666666666554332 33444444444                   


Q ss_pred             EcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccC
Q 040206           97 LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG  176 (347)
Q Consensus        97 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  176 (347)
                        ++|.+...     ...++|++|++++|.+....+..  .++|++|++++|.+....+..+..+++|++|++++|.++.
T Consensus        88 --s~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           88 --NNNYVQEL-----LVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             --CSSEEEEE-----EECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             --cCCccccc-----cCCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence              44444421     12256666677666665444332  4567777777777765556667777888888888888775


Q ss_pred             CCcccc-ccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhc
Q 040206          177 PLPPSL-INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICK  255 (347)
Q Consensus       177 ~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~  255 (347)
                      ..+..+ ..+++|++|++++|.+.+. + ....+++|+.|++++|.+++..+.....++|+.|++++|.++.        
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~--------  228 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--------  228 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--------
T ss_pred             ccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc--------
Confidence            555555 3678899999999888744 2 2335888999999999888766665555899999999998883        


Q ss_pred             cccccCCCcCccCCCCCcEEEccCCccC-CccchhhhhccCCCEEEcccce-eecccCCc
Q 040206          256 KLCFGPLPPSLVNCQYLEVLDVGNNQID-DTFLYWLDVLLQLQVLILRSNR-FWGPIGKL  313 (347)
Q Consensus       256 ~~~~~~l~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~l~L~~n~-~~~~~~~~  313 (347)
                            +|..+..+++|+.|++++|.+. +..+..+..++.|+.++++++. +.+..+..
T Consensus       229 ------l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          229 ------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             ------ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             ------hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence                  5566788899999999999998 6677788889999999999655 55554433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.6e-25  Score=193.79  Aligned_cols=217  Identities=24%  Similarity=0.223  Sum_probs=121.1

Q ss_pred             CccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccC
Q 040206           92 HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSG  171 (347)
Q Consensus        92 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  171 (347)
                      +++.|++++|.+. .+|..+..+++|++|++++|.+...+.....+++|++|++++|.+. ..|..+..+++|++|++++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence            3344444444443 3333344445555555555544422222223344555555555444 3444455555555555555


Q ss_pred             CcccCCCccccc---------cCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEccc
Q 040206          172 NHLEGPLPPSLI---------NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRM  242 (347)
Q Consensus       172 ~~~~~~~~~~l~---------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~  242 (347)
                      |......|..+.         .+++|++|++++|.+. .+|..+..+++|+.|++++|.+++..+.....++|+.|++++
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence            444434443332         3666666666666666 455566666666777766666665444333346667777776


Q ss_pred             CcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccccceeeee
Q 040206          243 NKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHFI  322 (347)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~~~~~  322 (347)
                      |.+.+.             +|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.+|..+..+.....
T Consensus       239 n~~~~~-------------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~  305 (328)
T 4fcg_A          239 CTALRN-------------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI  305 (328)
T ss_dssp             CTTCCB-------------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred             Ccchhh-------------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence            666643             4445666667777777776666666666666777777777777777777766666665544


Q ss_pred             eE
Q 040206          323 VR  324 (347)
Q Consensus       323 ~~  324 (347)
                      ..
T Consensus       306 l~  307 (328)
T 4fcg_A          306 IL  307 (328)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.3e-24  Score=196.01  Aligned_cols=241  Identities=20%  Similarity=0.129  Sum_probs=207.3

Q ss_pred             CCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCc
Q 040206           71 NLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNN  149 (347)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~  149 (347)
                      ..+.++.++..+...+...+++++.|++++|.+....+..|.++++|++|++++|.+....+..+ .+++|++|++++|.
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            46788999999998888888999999999999998888899999999999999999987766555 56899999999999


Q ss_pred             cccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCc-ccCCCCccccCCCCCCeEEecCCccccCcCc
Q 040206          150 FQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN-LSGPIPECLGNSTRLSFLDVGNNSLSGPIPE  228 (347)
Q Consensus       150 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  228 (347)
                      +....+..+..+++|++|++++|.+....+..+..+++|+.|++++|+ +....+..+..+++|+.|++++|.++. .+.
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~  202 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN  202 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCC
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccc
Confidence            986666789999999999999999987777789999999999999954 444445578899999999999999984 445


Q ss_pred             cccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206          229 CLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       229 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~  308 (347)
                      ....++|+.|++++|.+++.             .+..|..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+++
T Consensus       203 ~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNHLSAI-------------RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL  269 (440)
T ss_dssp             CTTCSSCCEEECTTSCCCEE-------------CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred             cCCCcccCEEECCCCccCcc-------------ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence            55568999999999999964             34578889999999999999998888889999999999999999998


Q ss_pred             ccCCccccceeeeeeEe
Q 040206          309 PIGKLRSRWSGHFIVRT  325 (347)
Q Consensus       309 ~~~~~~~~~~~~~~~~~  325 (347)
                      ..+..+..+..+..+..
T Consensus       270 ~~~~~~~~l~~L~~L~L  286 (440)
T 3zyj_A          270 LPHDLFTPLHHLERIHL  286 (440)
T ss_dssp             CCTTTTSSCTTCCEEEC
T ss_pred             cChhHhccccCCCEEEc
Confidence            77777666665555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1.3e-24  Score=196.83  Aligned_cols=241  Identities=21%  Similarity=0.145  Sum_probs=206.4

Q ss_pred             CCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCc
Q 040206           71 NLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNN  149 (347)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~  149 (347)
                      +.+.++.++..+...+...++++++|++++|.+....+..|.++++|+.|++++|.+....+..+ .+++|++|++++|.
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            46788999889988888888999999999999998888899999999999999999988776655 57799999999999


Q ss_pred             cccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCC-cccCCCCccccCCCCCCeEEecCCccccCcCc
Q 040206          150 FQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNN-NLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE  228 (347)
Q Consensus       150 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  228 (347)
                      +....+..+..+++|++|++++|.+....+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.+++. +.
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~  213 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PN  213 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CC
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cc
Confidence            98777777999999999999999998766678899999999999995 44444455788999999999999999854 55


Q ss_pred             cccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206          229 CLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       229 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~  308 (347)
                      ....++|+.|++++|.+.+..             |..+..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+++
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~-------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIR-------------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEEC-------------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccccccccEEECcCCcCcccC-------------cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence            555689999999999999643             4467889999999999999998888889999999999999999998


Q ss_pred             ccCCccccceeeeeeEe
Q 040206          309 PIGKLRSRWSGHFIVRT  325 (347)
Q Consensus       309 ~~~~~~~~~~~~~~~~~  325 (347)
                      ..+..+..+..+..+..
T Consensus       281 ~~~~~~~~l~~L~~L~L  297 (452)
T 3zyi_A          281 LPHDLFTPLRYLVELHL  297 (452)
T ss_dssp             CCTTSSTTCTTCCEEEC
T ss_pred             cChHHhccccCCCEEEc
Confidence            76666666665555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.9e-24  Score=182.86  Aligned_cols=223  Identities=22%  Similarity=0.148  Sum_probs=170.0

Q ss_pred             EEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccc
Q 040206           75 LTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGS  153 (347)
Q Consensus        75 L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~  153 (347)
                      .+..+..+...+...++++++|++++|.+....+..+.++++|++|++++|.+....+..+ .+++|++|++++|.+...
T Consensus        12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (276)
T 2z62_A           12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (276)
T ss_dssp             EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence            3344444444444455667777777777776666677788888888888888876665444 556888888888888766


Q ss_pred             cCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCC-CCccccCCCCCCeEEecCCccccCcCccccc
Q 040206          154 IPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGP-IPECLGNSTRLSFLDVGNNSLSGPIPECLAN  232 (347)
Q Consensus       154 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  232 (347)
                      .+..+..+++|++|++++|.+....+..++.+++|++|++++|.+.+. .|..+..+++|+.|++++|.+++..+..+..
T Consensus        92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  171 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  171 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence            667788888999999988888766666788889999999999988753 4788888999999999999887655444333


Q ss_pred             -cCCc----EEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceee
Q 040206          233 -STLE----ILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFW  307 (347)
Q Consensus       233 -~~L~----~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~  307 (347)
                       .+++    .+++++|.+.+.              +.......+|++|++++|.+++.++..+..+++|+.|++++|++.
T Consensus       172 l~~L~~l~l~L~ls~n~l~~~--------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          172 LHQMPLLNLSLDLSLNPMNFI--------------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             HHTCTTCCEEEECCSSCCCEE--------------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             hhhccccceeeecCCCccccc--------------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence             4555    899999999853              223334458999999999999877777889999999999999999


Q ss_pred             cccC
Q 040206          308 GPIG  311 (347)
Q Consensus       308 ~~~~  311 (347)
                      +.++
T Consensus       238 c~c~  241 (276)
T 2z62_A          238 CSCP  241 (276)
T ss_dssp             CCTT
T ss_pred             ccCC
Confidence            8876

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=6.3e-24  Score=197.49  Aligned_cols=248  Identities=25%  Similarity=0.267  Sum_probs=206.2

Q ss_pred             CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCC
Q 040206            1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSN   80 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~   80 (347)
                      +|++|++++|.++.+|.   .+++|++|++++|+++ .+|.     .+++|++|++++|.++.++. .+++|+.|++++|
T Consensus        62 ~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~-----~l~~L~~L~Ls~N~l~~l~~-~l~~L~~L~L~~N  131 (622)
T 3g06_A           62 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV-----LPPGLLELSIFSNPLTHLPA-LPSGLCKLWIFGN  131 (622)
T ss_dssp             TCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC-----CCTTCCEEEECSCCCCCCCC-CCTTCCEEECCSS
T ss_pred             CCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC-----CCCCCCEEECcCCcCCCCCC-CCCCcCEEECCCC
Confidence            47899999999999997   6799999999999998 5665     33999999999999999888 7799999999999


Q ss_pred             CCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206           81 LLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK  160 (347)
Q Consensus        81 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  160 (347)
                      .++..+. .+++|++|++++|.+.. ++.   .+.+|+.|++++|.+...+   ...++|+.|++++|.+.. +|.   .
T Consensus       132 ~l~~lp~-~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~---~  199 (622)
T 3g06_A          132 QLTSLPV-LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPT---L  199 (622)
T ss_dssp             CCSCCCC-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC---C
T ss_pred             CCCcCCC-CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCC---c
Confidence            9987544 56999999999999884 333   3578999999999998654   345789999999999873 443   3


Q ss_pred             CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEc
Q 040206          161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDM  240 (347)
Q Consensus       161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L  240 (347)
                      +++|+.|++++|.++ .++.   .+++|+.|++++|.+.+ +|   ..+++|+.|++++|.++....   ..++|+.|++
T Consensus       200 ~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~L  268 (622)
T 3g06_A          200 PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSV  268 (622)
T ss_dssp             CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred             cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeC
Confidence            478999999999988 3443   35889999999999985 44   456899999999999985443   4579999999


Q ss_pred             ccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccC
Q 040206          241 RMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQ  295 (347)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~  295 (347)
                      ++|.++              .+|..+..+++|+.|++++|.+++..+..+..+++
T Consensus       269 s~N~L~--------------~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          269 YRNQLT--------------RLPESLIHLSSETTVNLEGNPLSERTLQALREITS  309 (622)
T ss_dssp             CSSCCC--------------SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCC--------------cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence            999999              36667889999999999999999877777766543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.93  E-value=7e-28  Score=218.95  Aligned_cols=298  Identities=20%  Similarity=0.206  Sum_probs=220.8

Q ss_pred             CceEEEecCCCCCC-CCh-hhhcCC----CccEEeccCCccccc----CChhhhhcCCCcccEEEcCCCcCCCCCC----
Q 040206            1 KTIKTQVKTCNISE-FPD-ILRTQH----QLEWLDLSKNQIRGR----IPSWMWDIGVHTLQFLILSQNVLTSIDH----   66 (347)
Q Consensus         1 ~l~~l~l~~~~~~~-~~~-~~~~~~----~L~~L~l~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~~~----   66 (347)
                      +|++|++++|.+.. .+. .+..++    +|++|++++|.+++.    ++..+.  .+++|++|++++|.+++...    
T Consensus        57 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~  134 (461)
T 1z7x_W           57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR--TLPTLQELHLSDNLLGDAGLQLLC  134 (461)
T ss_dssp             TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT--SCTTCCEEECCSSBCHHHHHHHHH
T ss_pred             CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc--cCCceeEEECCCCcCchHHHHHHH
Confidence            47899999999883 333 334455    799999999998853    355555  44999999999998865432    


Q ss_pred             ----CCCCCCcEEEccCCCCCccCC----C---CCCCccEEEcccCcccccCCcccc-----CCCCccEEEcccCccccc
Q 040206           67 ----LPWKNLQYLTLDSNLLQGSLP----D---LPPHMVQLLISNNSLTGEIPSSFC-----NLSSIQYLNLSNNSLSGQ  130 (347)
Q Consensus        67 ----~~~~~L~~L~l~~~~~~~~~~----~---~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~  130 (347)
                          ...++|++|++++|.++....    .   ..++|++|++++|.+....+..+.     ..++|++|++++|.+...
T Consensus       135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  214 (461)
T 1z7x_W          135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD  214 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred             HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence                234679999999999885332    1   138999999999998754333333     356999999999988753


Q ss_pred             C----C-cccCCccccEEECCCCcccccc-----CccCCCCCCccEEEccCCcccCC----CccccccCCCCcEEEccCC
Q 040206          131 I----P-QCLGNSTLETLDLGMNNFQGSI-----PQTNAKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDVGNN  196 (347)
Q Consensus       131 ~----~-~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n  196 (347)
                      .    + ....+++|++|++++|.+....     +..+..+++|++|++++|.++..    .+..+..+++|++|++++|
T Consensus       215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence            1    2 2224679999999999875432     33344678999999999998743    4566777999999999999


Q ss_pred             cccCCCCcccc-----CCCCCCeEEecCCccccCcCccc-----cccCCcEEEcccCcccccCChhhhccccccCCCcCc
Q 040206          197 NLSGPIPECLG-----NSTRLSFLDVGNNSLSGPIPECL-----ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSL  266 (347)
Q Consensus       197 ~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~-----~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~  266 (347)
                      .+.+..+..+.     ..++|+.|++++|.+++.....+     ..++|+.|++++|.+.+..+..++.         .+
T Consensus       295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~---------~l  365 (461)
T 1z7x_W          295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ---------GL  365 (461)
T ss_dssp             CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH---------HH
T ss_pred             CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH---------HH
Confidence            88644333332     33699999999999886543222     2279999999999998765554322         22


Q ss_pred             c-CCCCCcEEEccCCccCC----ccchhhhhccCCCEEEcccceeecc
Q 040206          267 V-NCQYLEVLDVGNNQIDD----TFLYWLDVLLQLQVLILRSNRFWGP  309 (347)
Q Consensus       267 ~-~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~l~L~~n~~~~~  309 (347)
                      . .+++|++|++++|.+++    ..+..+..+++|++|++++|++++.
T Consensus       366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            2 26789999999999986    5677788899999999999999875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=6.4e-25  Score=192.41  Aligned_cols=269  Identities=17%  Similarity=0.118  Sum_probs=216.2

Q ss_pred             CCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCC---CCCCccEEEcccCcccccCCccccCCCCccEEEcc
Q 040206           47 GVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPD---LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLS  123 (347)
Q Consensus        47 ~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  123 (347)
                      .|+.....+.+++.++.++..-.++|++|++++|.+......   .+++|++|++++|.+....+..+.++++|++|+++
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            456677789999999999987778999999999999876553   35899999999999998878889999999999999


Q ss_pred             cCcccccCCccc-CCccccEEECCCCccccccC-ccCCCCCCccEEEccCC-cccCCCccccccCCCCcEEEccCCcccC
Q 040206          124 NNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIP-QTNAKGCNLTSLRLSGN-HLEGPLPPSLINCVNLQFLDVGNNNLSG  200 (347)
Q Consensus       124 ~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~~~~  200 (347)
                      +|.+....+..+ .+++|++|++++|.+....+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            999987666533 57899999999999884443 47889999999999998 4665666788999999999999999988


Q ss_pred             CCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccC
Q 040206          201 PIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGN  279 (347)
Q Consensus       201 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~  279 (347)
                      ..+..+..+++|++|++++|.+......... .++|+.|++++|.+++..+..+         + ....+..++.+++++
T Consensus       189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---------~-~~~~~~~l~~l~L~~  258 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL---------S-TGETNSLIKKFTFRN  258 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------CCCCCCEEEEES
T ss_pred             cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc---------c-cccccchhhcccccc
Confidence            8888999999999999999998744433333 4899999999999996543321         1 234567788999999


Q ss_pred             CccCC----ccchhhhhccCCCEEEcccceeecccCCc-cccceeeeeeEee
Q 040206          280 NQIDD----TFLYWLDVLLQLQVLILRSNRFWGPIGKL-RSRWSGHFIVRTV  326 (347)
Q Consensus       280 n~i~~----~~~~~~~~l~~L~~l~L~~n~~~~~~~~~-~~~~~~~~~~~~~  326 (347)
                      +.+.+    ..+..+..+++|+.|++++|.++ .+|.. +..+..+..+...
T Consensus       259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~  309 (353)
T 2z80_A          259 VKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLH  309 (353)
T ss_dssp             CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             ccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEee
Confidence            98876    34566788999999999999998 46654 4666665555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.5e-25  Score=202.71  Aligned_cols=243  Identities=21%  Similarity=0.177  Sum_probs=161.6

Q ss_pred             CCChhhhcCC----CccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCCC
Q 040206           14 EFPDILRTQH----QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLPD   88 (347)
Q Consensus        14 ~~~~~~~~~~----~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~   88 (347)
                      .+|..+..+.    +|+.|++++|.+.+..|..+..+  ++|++|++++|.+++... ..+++|++|++++|.+++..  
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--   96 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL--   96 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTC--TTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE--
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCC--CCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC--
Confidence            5565555544    78888888888886555566543  788888888877764433 44555666665555544322  


Q ss_pred             CCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEE
Q 040206           89 LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLR  168 (347)
Q Consensus        89 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  168 (347)
                                              ..++|+.|++++|.+....+.  .+++|+.|++++|.+....|..+..+++|++|+
T Consensus        97 ------------------------~~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  150 (487)
T 3oja_A           97 ------------------------VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD  150 (487)
T ss_dssp             ------------------------ECTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE
T ss_pred             ------------------------CCCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE
Confidence                                    124555566665555543332  235566677777766655566666677777777


Q ss_pred             ccCCcccCCCccccc-cCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccc
Q 040206          169 LSGNHLEGPLPPSLI-NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSG  247 (347)
Q Consensus       169 l~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  247 (347)
                      +++|.++...+..+. .+++|+.|++++|.+.+..  ....+++|+.|++++|.+++..+.....++|+.|++++|.+++
T Consensus       151 Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred             CCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc
Confidence            777777655555554 6778888888888776442  2335778888888888887665555555788888888888873


Q ss_pred             cCChhhhccccccCCCcCccCCCCCcEEEccCCccC-CccchhhhhccCCCEEEcc
Q 040206          248 SLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID-DTFLYWLDVLLQLQVLILR  302 (347)
Q Consensus       248 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~l~L~  302 (347)
                                    +|..+..+++|+.|++++|.+. +..+..+..++.|+.++++
T Consensus       229 --------------lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          229 --------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             --------------ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             --------------cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence                          4556777888888888888887 4556667777777777776

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.3e-25  Score=193.64  Aligned_cols=233  Identities=21%  Similarity=0.230  Sum_probs=177.7

Q ss_pred             CceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccC
Q 040206            1 KTIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDS   79 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~   79 (347)
                      ++++|++++|.+..++ .++.++++|++|++++|.+++..+  +.  .+++|++|++++|.++.++..  ++|++|++++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~--~l~~L~~L~Ls~n~l~~l~~~--~~L~~L~l~~  108 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLVG--PSIETLHAAN  108 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ET--TCTTCCEEECCSSEEEEEEEC--TTCCEEECCS
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hh--hcCCCCEEECcCCccccccCC--CCcCEEECCC
Confidence            4789999999999666 689999999999999999985544  44  459999999999998877644  8999999999


Q ss_pred             CCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc--CCccccEEECCCCccccccCcc
Q 040206           80 NLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL--GNSTLETLDLGMNNFQGSIPQT  157 (347)
Q Consensus        80 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~  157 (347)
                      |.+.......+++|++|++++|.+....+..+..+++|++|++++|.+....+..+  .+++|++|++++|.+... + .
T Consensus       109 n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~  186 (317)
T 3o53_A          109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-G  186 (317)
T ss_dssp             SCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-C
T ss_pred             CccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-c
Confidence            99998877778899999999999987777788889999999999998886655444  356888888888887644 2 2


Q ss_pred             CCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc-cCcCcccc-ccCC
Q 040206          158 NAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS-GPIPECLA-NSTL  235 (347)
Q Consensus       158 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~-~~~L  235 (347)
                      ...+++|++|++++|.++. .+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. +..+..+. .++|
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L  264 (317)
T 3o53_A          187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (317)
T ss_dssp             CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred             ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence            2346778888888887773 3445777778888888888777 34566777777777777777766 32222222 2455


Q ss_pred             cEEEcccC
Q 040206          236 EILDMRMN  243 (347)
Q Consensus       236 ~~L~L~~~  243 (347)
                      +.++++++
T Consensus       265 ~~l~l~~~  272 (317)
T 3o53_A          265 QTVAKQTV  272 (317)
T ss_dssp             HHHHHHHH
T ss_pred             eEEECCCc
Confidence            66666533

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=6.8e-26  Score=195.04  Aligned_cols=244  Identities=24%  Similarity=0.246  Sum_probs=156.9

Q ss_pred             hhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC----C-------CCCCCcEEEccCCCCCccCC
Q 040206           19 LRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH----L-------PWKNLQYLTLDSNLLQGSLP   87 (347)
Q Consensus        19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~-------~~~~L~~L~l~~~~~~~~~~   87 (347)
                      ++..++|+.+++++|.+  .+|..+..    .|+.|++++|.++....    .       .+++|++|            
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L------------  100 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTD----IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL------------  100 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHH----HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEE------------
T ss_pred             EccCCCceeEeeccccc--ccHHHHHH----HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEE------------
Confidence            44556677777777776  55665543    16666666666543221    0       24445544            


Q ss_pred             CCCCCccEEEcccCcccccCCccc--cCCCCccEEEcccCcccccCCccc-CC-----ccccEEECCCCccccccCccCC
Q 040206           88 DLPPHMVQLLISNNSLTGEIPSSF--CNLSSIQYLNLSNNSLSGQIPQCL-GN-----STLETLDLGMNNFQGSIPQTNA  159 (347)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~-~~-----~~L~~L~l~~~~~~~~~~~~~~  159 (347)
                               ++++|.+.+..+..+  ..+++|++|++++|.+... +..+ ..     ++|++|++++|.+....+..+.
T Consensus       101 ---------~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~  170 (312)
T 1wwl_A          101 ---------TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR  170 (312)
T ss_dssp             ---------EEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred             ---------EccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence                     455554444444443  5666677777776666654 2222 22     5677777777777656666777


Q ss_pred             CCCCccEEEccCCcccCC--Ccccc--ccCCCCcEEEccCCcccC---CCCccccCCCCCCeEEecCCccccCcC--ccc
Q 040206          160 KGCNLTSLRLSGNHLEGP--LPPSL--INCVNLQFLDVGNNNLSG---PIPECLGNSTRLSFLDVGNNSLSGPIP--ECL  230 (347)
Q Consensus       160 ~~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~n~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~  230 (347)
                      .+++|++|++++|.+...  .+..+  ..+++|++|++++|.+.+   .....+..+++|+.|++++|.+.+..+  ...
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            777888888887775422  12223  677888888888887762   112334567888888888888876552  222


Q ss_pred             cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206          231 ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       231 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~  308 (347)
                      ..++|+.|++++|.++ .             +|..+.  ++|++|++++|++++. +. +..+++|+.|++++|++++
T Consensus       251 ~l~~L~~L~Ls~N~l~-~-------------ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLK-Q-------------VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCTTCCEEECTTSCCS-S-------------CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hcCCCCEEECCCCccC-h-------------hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            2478888888888888 3             443443  7888999999988876 44 7788889999999988875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.1e-22  Score=171.46  Aligned_cols=205  Identities=23%  Similarity=0.233  Sum_probs=119.5

Q ss_pred             CCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCc
Q 040206           71 NLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNN  149 (347)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~  149 (347)
                      +.+.++++++.++..+...++++++|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|++|++++|.
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence            34555665555555444445566666666666665555567777777777777777765544443 34566666666666


Q ss_pred             cccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcc
Q 040206          150 FQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPEC  229 (347)
Q Consensus       150 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  229 (347)
                      +....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++            
T Consensus        97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------------  164 (270)
T 2o6q_A           97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL------------  164 (270)
T ss_dssp             CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC------------
T ss_pred             CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe------------
Confidence            55444444555555666666555555444444555555555555555555433333444445555444            


Q ss_pred             ccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecc
Q 040206          230 LANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP  309 (347)
Q Consensus       230 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~  309 (347)
                                 ++|.+.+.             .+..+..+++|++|++++|.+++.++..+..+++|+.|++++|++...
T Consensus       165 -----------~~n~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          165 -----------YNNQLKRV-------------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             -----------CSSCCSCC-------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             -----------cCCcCcEe-------------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence                       44444421             112355666777777777777666656666777777777777777665


Q ss_pred             cC
Q 040206          310 IG  311 (347)
Q Consensus       310 ~~  311 (347)
                      ..
T Consensus       221 c~  222 (270)
T 2o6q_A          221 CN  222 (270)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=7.2e-25  Score=188.65  Aligned_cols=240  Identities=22%  Similarity=0.196  Sum_probs=160.8

Q ss_pred             ceEEEecCCCCCCCChhhhcCCCccEEeccCCccc-ccCChhhh-----hcCCCcccEEEcCCCcCCCC-CC----CCCC
Q 040206            2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIR-GRIPSWMW-----DIGVHTLQFLILSQNVLTSI-DH----LPWK   70 (347)
Q Consensus         2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-----~~~~~~L~~L~l~~~~l~~~-~~----~~~~   70 (347)
                      ++++++++|.+ .+|..+...  |+.|++++|.+. ..++..+.     ...+++|++|++++|.+++. +.    ..++
T Consensus        45 L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  121 (312)
T 1wwl_A           45 LEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP  121 (312)
T ss_dssp             CTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred             ceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence            45567778888 889877655  999999999984 45565553     01349999999999998853 32    3456


Q ss_pred             CCcEEEccCCCCCccCCCC-------CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEE
Q 040206           71 NLQYLTLDSNLLQGSLPDL-------PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETL  143 (347)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  143 (347)
                      +|++|++++|.+.+.+...       +++|++|++++|.+....+..++.+++|                       ++|
T Consensus       122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L-----------------------~~L  178 (312)
T 1wwl_A          122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL-----------------------STL  178 (312)
T ss_dssp             CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC-----------------------CEE
T ss_pred             CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC-----------------------CEE
Confidence            7777777777776441110       1445555555555544444444444444                       455


Q ss_pred             ECCCCccccc--cCcc--CCCCCCccEEEccCCcccCC---CccccccCCCCcEEEccCCcccCCCC-ccccCCCCCCeE
Q 040206          144 DLGMNNFQGS--IPQT--NAKGCNLTSLRLSGNHLEGP---LPPSLINCVNLQFLDVGNNNLSGPIP-ECLGNSTRLSFL  215 (347)
Q Consensus       144 ~l~~~~~~~~--~~~~--~~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L  215 (347)
                      ++++|.+.+.  .+..  +..+++|++|++++|.++..   ....+..+++|+.|++++|.+.+..+ ..+..+++|+.|
T Consensus       179 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  258 (312)
T 1wwl_A          179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL  258 (312)
T ss_dssp             ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEE
T ss_pred             ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEE
Confidence            5554443221  1112  25667788888888777621   11233567889999999998886553 455667899999


Q ss_pred             EecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206          216 DVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD  284 (347)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~  284 (347)
                      ++++|.++. .+..+. ++|+.|++++|++++              +|. +..+++|++|++++|.+++
T Consensus       259 ~Ls~N~l~~-ip~~~~-~~L~~L~Ls~N~l~~--------------~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          259 NLSFTGLKQ-VPKGLP-AKLSVLDLSYNRLDR--------------NPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             ECTTSCCSS-CCSSCC-SEEEEEECCSSCCCS--------------CCC-TTTSCEEEEEECTTCTTTC
T ss_pred             ECCCCccCh-hhhhcc-CCceEEECCCCCCCC--------------Chh-HhhCCCCCEEeccCCCCCC
Confidence            999999884 444333 789999999999984              444 7889999999999999875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.1e-23  Score=191.71  Aligned_cols=213  Identities=22%  Similarity=0.215  Sum_probs=176.9

Q ss_pred             CceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccC
Q 040206            1 KTIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDS   79 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~   79 (347)
                      +|++|+|++|.+..++ .+|.++++|++|++++|.+++..+  +.  .+++|++|++++|.++.++..  ++|++|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~~~--~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLVG--PSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT--TCTTCCEEECCSSEEEEEEEC--TTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc--cCCCCCEEEecCCcCCCCCCC--CCcCEEECcC
Confidence            3789999999999665 689999999999999999986555  44  459999999999999887654  8999999999


Q ss_pred             CCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc--CCccccEEECCCCccccccCcc
Q 040206           80 NLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL--GNSTLETLDLGMNNFQGSIPQT  157 (347)
Q Consensus        80 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~  157 (347)
                      |.+....+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+  .+++|+.|++++|.+....  .
T Consensus       109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~  186 (487)
T 3oja_A          109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--G  186 (487)
T ss_dssp             SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--C
T ss_pred             CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--c
Confidence            99998888788999999999999998878888999999999999999987665554  4678999999999887442  2


Q ss_pred             CCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206          158 NAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       158 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                      ...+++|++|++++|.++. .+..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+.
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            3357888888888888874 34457788888888888888874 5666777888888888888776

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=3e-22  Score=169.28  Aligned_cols=219  Identities=18%  Similarity=0.118  Sum_probs=162.4

Q ss_pred             EcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccC
Q 040206           55 ILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQI  131 (347)
Q Consensus        55 ~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  131 (347)
                      +..+..++.++..-.++|++|++++|.+.......   +++|++|++++|.+....+..+..+++|++|++++|.+....
T Consensus        13 ~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   92 (276)
T 2z62_A           13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA   92 (276)
T ss_dssp             ECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             EecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence            33344444444433345556666655555443322   356677777777766566667788888888888888887666


Q ss_pred             Cccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCC-CccccccCCCCcEEEccCCcccCCCCccccCC
Q 040206          132 PQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGP-LPPSLINCVNLQFLDVGNNNLSGPIPECLGNS  209 (347)
Q Consensus       132 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~  209 (347)
                      +..+ .+++|++|++++|.+....+..+..+++|++|++++|.++.. .+..++.+++|++|++++|.+.+..+..+..+
T Consensus        93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  172 (276)
T 2z62_A           93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL  172 (276)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred             hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence            5544 567888888888888766666788889999999999998754 47889999999999999999987666677666


Q ss_pred             CCCC----eEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCc
Q 040206          210 TRLS----FLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT  285 (347)
Q Consensus       210 ~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~  285 (347)
                      ++|+    .+++++|.+.+..+..+...+|+.|++++|.+++.             .+..+..+++|++|++++|.+...
T Consensus       173 ~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV-------------PDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             HTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC-------------CTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             hhccccceeeecCCCcccccCccccCCCcccEEECCCCceeec-------------CHhHhcccccccEEEccCCccccc
Confidence            6666    89999999987777777777999999999999842             123468899999999999999754


Q ss_pred             c
Q 040206          286 F  286 (347)
Q Consensus       286 ~  286 (347)
                      .
T Consensus       240 c  240 (276)
T 2z62_A          240 C  240 (276)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=5.4e-22  Score=168.59  Aligned_cols=200  Identities=25%  Similarity=0.200  Sum_probs=138.4

Q ss_pred             CCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCC
Q 040206           69 WKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMN  148 (347)
Q Consensus        69 ~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  148 (347)
                      ++++++++++++.++..+...+++++.|++++|.+....+..+..+++|+.|++++|.+...... ..+++|+.|++++|
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N   87 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN   87 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS
T ss_pred             cCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC
Confidence            45566666666666655555556667777777777666666778888888888888887754433 45567888888888


Q ss_pred             ccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCc
Q 040206          149 NFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE  228 (347)
Q Consensus       149 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  228 (347)
                      .+. ..|..+..+++|++|++++|+++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.....
T Consensus        88 ~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  166 (290)
T 1p9a_G           88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG  166 (290)
T ss_dssp             CCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             cCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence            776 5666677777788888888877766556677777888888888877766666667777777777777777755544


Q ss_pred             ccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206          229 CLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD  284 (347)
Q Consensus       229 ~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~  284 (347)
                      .+. .++|+.|++++|.+.              .+|..+..+++|+.+++++|.+..
T Consensus       167 ~~~~l~~L~~L~L~~N~l~--------------~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          167 LLNGLENLDTLLLQENSLY--------------TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TTTTCTTCCEEECCSSCCC--------------CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             HhcCcCCCCEEECCCCcCC--------------ccChhhcccccCCeEEeCCCCccC
Confidence            433 367777777777776              344455556667777777776653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=4.8e-22  Score=167.60  Aligned_cols=227  Identities=18%  Similarity=0.134  Sum_probs=157.2

Q ss_pred             cccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCccc
Q 040206           50 TLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS  128 (347)
Q Consensus        50 ~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  128 (347)
                      .+..+++..+.+.+... ..+++|+.|+++++.+...                       ..+..+++|++|++++|.+.
T Consensus        20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-----------------------~~l~~l~~L~~L~l~~n~l~   76 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-----------------------QGIQYLPNVRYLALGGNKLH   76 (272)
T ss_dssp             HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCC-----------------------TTGGGCTTCCEEECTTSCCC
T ss_pred             HHHHHHhcCcccccccccccccceeeeeeCCCCcccc-----------------------cccccCCCCcEEECCCCCCC
Confidence            34444555554444322 3445566666655554421                       23556666777777766665


Q ss_pred             ccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccC
Q 040206          129 GQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGN  208 (347)
Q Consensus       129 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~  208 (347)
                      .. +....+++|++|++++|.+....+..+..+++|++|++++|.++...+..++.+++|++|++++|.+.+..+..+..
T Consensus        77 ~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  155 (272)
T 3rfs_A           77 DI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK  155 (272)
T ss_dssp             CC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             Cc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc
Confidence            42 33345567777777777776555556677778888888888877666666777888888888888887666666778


Q ss_pred             CCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccc
Q 040206          209 STRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL  287 (347)
Q Consensus       209 ~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~  287 (347)
                      +++|+.|++++|.+++..+..+. .++|+.|++++|.+.+.             .+..+..+++|++|++++|.+.+   
T Consensus       156 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~l~~N~~~~---  219 (272)
T 3rfs_A          156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-------------PDGVFDRLTSLQYIWLHDNPWDC---  219 (272)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCEEECCSSCBCC---
T ss_pred             CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc-------------CHHHHhCCcCCCEEEccCCCccc---
Confidence            88888888888888766555433 47888888888888853             23357788999999999998763   


Q ss_pred             hhhhhccCCCEEEcccceeecccCCccccceee
Q 040206          288 YWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGH  320 (347)
Q Consensus       288 ~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~~~  320 (347)
                          .+++|+.+++++|.+.|.+|.++......
T Consensus       220 ----~~~~l~~l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          220 ----TCPGIRYLSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             ----CTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred             ----cCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence                46688899999999999999887776654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=6.8e-21  Score=160.37  Aligned_cols=196  Identities=21%  Similarity=0.180  Sum_probs=115.9

Q ss_pred             ccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcc
Q 040206           51 LQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL  127 (347)
Q Consensus        51 L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  127 (347)
                      .++++++++.++.++..-.+++++|++++|.+.......   +++|++|++++|.+..+.+..|..+++|++|++++|.+
T Consensus        18 ~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l   97 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL   97 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred             CCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence            344444444444444433344555555555444333211   25556666666655544445556677777777777776


Q ss_pred             cccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccc
Q 040206          128 SGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECL  206 (347)
Q Consensus       128 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l  206 (347)
                      ....+..+ .+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+
T Consensus        98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  177 (270)
T 2o6q_A           98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF  177 (270)
T ss_dssp             CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHh
Confidence            65554443 45577777777777765555666777777777777777775555556777778888888777776555566


Q ss_pred             cCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCccc
Q 040206          207 GNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFS  246 (347)
Q Consensus       207 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~  246 (347)
                      ..+++|+.|++++|.+++..+..+. .++|+.|++++|.+.
T Consensus       178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            6677777777777666643333222 244444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.5e-22  Score=168.43  Aligned_cols=220  Identities=20%  Similarity=0.222  Sum_probs=154.3

Q ss_pred             CccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccC-CCCCCCccEEEcccC
Q 040206           24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSL-PDLPPHMVQLLISNN  101 (347)
Q Consensus        24 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~  101 (347)
                      ++..+++..+.+.+...  ...+  ++|+.|+++++.++.++. ..+++|++|++++|.+.... ...+++|++|++++|
T Consensus        20 ~l~~l~l~~~~~~~~~~--~~~l--~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVT--QNEL--NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHHHTCSCTTSEEC--HHHH--TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS
T ss_pred             HHHHHHhcCcccccccc--cccc--cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC
Confidence            34444555555543322  2222  667777777776666654 45667777777777665432 122367777777777


Q ss_pred             cccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCcc
Q 040206          102 SLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPP  180 (347)
Q Consensus       102 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  180 (347)
                      .+....+..+..+++|++|++++|.+....+..+ .+++|++|++++|.+....+..+..+++|++|++++|.++...+.
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence            7776666667788888888888888876666544 456888888888887766666677888888888888888866666


Q ss_pred             ccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhh
Q 040206          181 SLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNI  253 (347)
Q Consensus       181 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  253 (347)
                      .++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+...      .+.++.+++..|.+++.+|..+
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred             HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCCCcccCcc
Confidence            678888888888888888877777778888888888888876633      2467778888888887766643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=6.2e-21  Score=162.04  Aligned_cols=201  Identities=22%  Similarity=0.185  Sum_probs=112.9

Q ss_pred             hhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCCCCCccCCCCCCCccE
Q 040206           19 LRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNLLQGSLPDLPPHMVQ   95 (347)
Q Consensus        19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~L~~   95 (347)
                      ++++++++.+++++++++ .+|..+.    ++++.|++++|.++.+..   ..+++|++|++++|.++....        
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------   72 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--------   72 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--------
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--------
Confidence            456666777777776666 5554442    456666776666665543   344556666666655543221        


Q ss_pred             EEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCccc
Q 040206           96 LLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE  175 (347)
Q Consensus        96 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  175 (347)
                                     ...+++|++|++++|.+...+.....+++|+.|++++|.+....+..+..+++|++|++++|.++
T Consensus        73 ---------------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  137 (290)
T 1p9a_G           73 ---------------DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (290)
T ss_dssp             ---------------CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             ---------------CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence                           13445555555555555433333334445555555555555444455555666666666666665


Q ss_pred             CCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccc
Q 040206          176 GPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSG  247 (347)
Q Consensus       176 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  247 (347)
                      ...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++......+...+|+.+++++|.+..
T Consensus       138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            444444555666666666666665444445555666666666666666444444444566666666666553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=4.9e-24  Score=189.06  Aligned_cols=261  Identities=18%  Similarity=0.168  Sum_probs=124.0

Q ss_pred             CCChhhhcCCCccEEeccCCcccccCChhhhhc--CCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCCCC
Q 040206           14 EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDI--GVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPP   91 (347)
Q Consensus        14 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~   91 (347)
                      .++.++..+++|+.|++++|.+.+..+..+...  .+++|++|++++|.+..+.......++.+.        .....++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~--------~~l~~~~   94 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL--------QALLKCP   94 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH--------HHHTTCT
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH--------HHHhhCC
Confidence            677788888999999999998886655443321  346777777776654433210000000000        0001113


Q ss_pred             CccEEEcccCcccc----cCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCC------
Q 040206           92 HMVQLLISNNSLTG----EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKG------  161 (347)
Q Consensus        92 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------  161 (347)
                      +|++|++++|.+..    ..+..+..+++|++|++++|.+....+..+..                   .+..+      
T Consensus        95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-------------------~l~~l~~~~~~  155 (386)
T 2ca6_A           95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-------------------ALQELAVNKKA  155 (386)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH-------------------HHHHHHHHHHH
T ss_pred             cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH-------------------HHHHHhhhhhc
Confidence            34444444444432    24445667777888888777765322211110                   00001      


Q ss_pred             ---CCccEEEccCCcccCC-Cc---cccccCCCCcEEEccCCcccC-----CCCccccCCCCCCeEEecCCcccc----C
Q 040206          162 ---CNLTSLRLSGNHLEGP-LP---PSLINCVNLQFLDVGNNNLSG-----PIPECLGNSTRLSFLDVGNNSLSG----P  225 (347)
Q Consensus       162 ---~~L~~L~l~~~~~~~~-~~---~~l~~~~~L~~L~l~~n~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~----~  225 (347)
                         ++|++|++++|.++.. .+   ..+..+++|++|++++|.+..     ..+..+..+++|+.|++++|.++.    .
T Consensus       156 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~  235 (386)
T 2ca6_A          156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA  235 (386)
T ss_dssp             HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred             ccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHH
Confidence               3444444444444311 11   233344555555555554431     112244455555555555555431    1


Q ss_pred             cCcc-ccccCCcEEEcccCcccccCChhhhccccccCCCcCc--cCCCCCcEEEccCCccCC----ccchhh-hhccCCC
Q 040206          226 IPEC-LANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSL--VNCQYLEVLDVGNNQIDD----TFLYWL-DVLLQLQ  297 (347)
Q Consensus       226 ~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~n~i~~----~~~~~~-~~l~~L~  297 (347)
                      .+.. ...++|+.|++++|.+++.+...         ++..+  +.+++|++|+|++|.+++    ..+..+ ..+++|+
T Consensus       236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~---------l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~  306 (386)
T 2ca6_A          236 LAIALKSWPNLRELGLNDCLLSARGAAA---------VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL  306 (386)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCHHHHHH---------HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHHHccCCCcCEEECCCCCCchhhHHH---------HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence            1111 12245555555555555432221         12223  225566666666666654    233333 3456666


Q ss_pred             EEEcccceeeccc
Q 040206          298 VLILRSNRFWGPI  310 (347)
Q Consensus       298 ~l~L~~n~~~~~~  310 (347)
                      .|++++|++++..
T Consensus       307 ~L~l~~N~l~~~~  319 (386)
T 2ca6_A          307 FLELNGNRFSEED  319 (386)
T ss_dssp             EEECTTSBSCTTS
T ss_pred             EEEccCCcCCcch
Confidence            6666666665544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=1e-23  Score=197.44  Aligned_cols=301  Identities=12%  Similarity=0.077  Sum_probs=160.9

Q ss_pred             ceEEEecCCC-CC--CCChhhhcCCCccEEeccCCcccccCChh---hhhcCCCcccEEEcCCCcCCCCCC-------CC
Q 040206            2 TIKTQVKTCN-IS--EFPDILRTQHQLEWLDLSKNQIRGRIPSW---MWDIGVHTLQFLILSQNVLTSIDH-------LP   68 (347)
Q Consensus         2 l~~l~l~~~~-~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~-------~~   68 (347)
                      |++|++++|. +.  .++....++++|++|++++|.+++....+   +.. .+++|++|+++++.++.+..       ..
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~n~~~~~~~~~l~~~~~~  218 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ-HNTSLEVLNFYMTEFAKISPKDLETIARN  218 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH-HCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh-cCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence            6777777775 22  23344457777777777777766543221   222 34677777777776653332       23


Q ss_pred             CCCCcEEEccCCCCCccC-----------------------------CCCCCCccEEEcccCcccccCCccccCCCCccE
Q 040206           69 WKNLQYLTLDSNLLQGSL-----------------------------PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQY  119 (347)
Q Consensus        69 ~~~L~~L~l~~~~~~~~~-----------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  119 (347)
                      +++|++|++++|.+.+..                             ...+++|+.+.++++... ..+..+..+++|++
T Consensus       219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~  297 (592)
T 3ogk_B          219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRK  297 (592)
T ss_dssp             CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCE
T ss_pred             CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcE
Confidence            466666666666543210                             001123333333222111 22333334445555


Q ss_pred             EEcccCcccccCCc--ccC------------------------CccccEEECCC-----------Cccccc-cCccCCCC
Q 040206          120 LNLSNNSLSGQIPQ--CLG------------------------NSTLETLDLGM-----------NNFQGS-IPQTNAKG  161 (347)
Q Consensus       120 L~l~~~~~~~~~~~--~~~------------------------~~~L~~L~l~~-----------~~~~~~-~~~~~~~~  161 (347)
                      |++++|.+......  ...                        +++|++|++++           +.+... .......+
T Consensus       298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~  377 (592)
T 3ogk_B          298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC  377 (592)
T ss_dssp             EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred             EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence            55555443211110  012                        34455555552           222111 11112234


Q ss_pred             CCccEEEccCCcccCCCcccccc-CCCCcEEEcc----CCcccCC-----CCccccCCCCCCeEEecCCc--cccCcCcc
Q 040206          162 CNLTSLRLSGNHLEGPLPPSLIN-CVNLQFLDVG----NNNLSGP-----IPECLGNSTRLSFLDVGNNS--LSGPIPEC  229 (347)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~n~~~~~-----~~~~l~~~~~L~~L~l~~~~--~~~~~~~~  229 (347)
                      ++|++|++..+.++...+..+.. +++|+.|+++    .+.+.+.     .+..+..+++|+.|+++.|.  +++.....
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~  457 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY  457 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence            56666666555554333333433 6677777775    3344432     22234557777777776543  33322222


Q ss_pred             cc--ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCc-cchhhhhccCCCEEEccccee
Q 040206          230 LA--NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT-FLYWLDVLLQLQVLILRSNRF  306 (347)
Q Consensus       230 ~~--~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~l~L~~n~~  306 (347)
                      +.  .++|+.|++++|++++..            ++..+..|++|++|++++|.+++. .+..+..+++|++|++++|++
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~~------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i  525 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDEG------------LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA  525 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHHH------------HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred             HHHhCccceEeeccCCCCCHHH------------HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence            21  367888888888877531            233457789999999999998754 344456899999999999999


Q ss_pred             ecccCCcccc
Q 040206          307 WGPIGKLRSR  316 (347)
Q Consensus       307 ~~~~~~~~~~  316 (347)
                      ++.....++.
T Consensus       526 t~~~~~~l~~  535 (592)
T 3ogk_B          526 SMTGQDLMQM  535 (592)
T ss_dssp             CTTCTTGGGG
T ss_pred             CHHHHHHHHH
Confidence            8775554443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.9e-21  Score=160.73  Aligned_cols=199  Identities=18%  Similarity=0.178  Sum_probs=148.0

Q ss_pred             CCCCccEEEcccCcccccCCccccCCCCccEEEcccCc-ccccCCccc-CCccccEEECCC-CccccccCccCCCCCCcc
Q 040206           89 LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS-LSGQIPQCL-GNSTLETLDLGM-NNFQGSIPQTNAKGCNLT  165 (347)
Q Consensus        89 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~  165 (347)
                      .++++++|++++|.++.+.+..+..+++|++|++++|. +....+..+ .+++|++|++++ |.+....+..+..+++|+
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            44577777777777776666677788888888888886 766555444 567888888887 777755566777888888


Q ss_pred             EEEccCCcccCCCccccccCCCCc---EEEccCC-cccCCCCccccCCCCCC-eEEecCCccccCcCccccccCCcEEEc
Q 040206          166 SLRLSGNHLEGPLPPSLINCVNLQ---FLDVGNN-NLSGPIPECLGNSTRLS-FLDVGNNSLSGPIPECLANSTLEILDM  240 (347)
Q Consensus       166 ~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~n-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~L  240 (347)
                      +|++++|.++. .|. +..+++|+   .|++++| .+.+..+..+..+++|+ .|++++|.++......+..++|+.|++
T Consensus       109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L  186 (239)
T 2xwt_C          109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL  186 (239)
T ss_dssp             EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEEC
T ss_pred             EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEc
Confidence            88888888874 444 77777777   8899988 88766666788888888 999988888755555555578888999


Q ss_pred             ccCc-ccccCChhhhccccccCCCcCccCC-CCCcEEEccCCccCCccchhhhhccCCCEEEcccce
Q 040206          241 RMNK-FSGSLPQNICKKLCFGPLPPSLVNC-QYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR  305 (347)
Q Consensus       241 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~  305 (347)
                      ++|+ +++.             -+..|..+ ++|++|++++|.++..++.   .+++|+.|+++++.
T Consensus       187 ~~n~~l~~i-------------~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          187 NKNKYLTVI-------------DKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TTCTTCCEE-------------CTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CCCCCcccC-------------CHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            9885 7742             12356777 8899999999988865543   56788888888764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.2e-20  Score=161.73  Aligned_cols=207  Identities=22%  Similarity=0.262  Sum_probs=106.2

Q ss_pred             EEcCCCcCCCC-CCCCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCC
Q 040206           54 LILSQNVLTSI-DHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP  132 (347)
Q Consensus        54 L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  132 (347)
                      +.+..+.+++. ....+++|++|+++++.+....                       .+..+++|++|++++|.+....+
T Consensus        24 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~-----------------------~~~~l~~L~~L~L~~n~i~~~~~   80 (308)
T 1h6u_A           24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-----------------------GVQYLNNLIGLELKDNQITDLAP   80 (308)
T ss_dssp             HHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT-----------------------TGGGCTTCCEEECCSSCCCCCGG
T ss_pred             HHhCCCCcCceecHHHcCCcCEEEeeCCCccCch-----------------------hhhccCCCCEEEccCCcCCCChh
Confidence            34444444442 2244567777777777665321                       23344444444444444443322


Q ss_pred             cccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCC
Q 040206          133 QCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRL  212 (347)
Q Consensus       133 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L  212 (347)
                       ...+++|++|++++|.+.. . ..+..+++|++|++++|.++.. + .+..+++|++|++++|.+.+..+  +..+++|
T Consensus        81 -~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L  153 (308)
T 1h6u_A           81 -LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNL  153 (308)
T ss_dssp             -GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred             -HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCc
Confidence             2233444444444444432 1 2344455555555555555432 2 25555556666666655553322  5555566


Q ss_pred             CeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhh
Q 040206          213 SFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDV  292 (347)
Q Consensus       213 ~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~  292 (347)
                      +.|++++|.+++..+ ....++|+.|++++|.+++              ++. +..+++|++|++++|.+.+..+  +..
T Consensus       154 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~--------------~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~  215 (308)
T 1h6u_A          154 QYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD--------------ISP-LASLPNLIEVHLKNNQISDVSP--LAN  215 (308)
T ss_dssp             CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--------------CGG-GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred             cEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc--------------Chh-hcCCCCCCEEEccCCccCcccc--ccC
Confidence            666666665553322 2233556666666666552              221 4556666666666666655432  556


Q ss_pred             ccCCCEEEcccceeec
Q 040206          293 LLQLQVLILRSNRFWG  308 (347)
Q Consensus       293 l~~L~~l~L~~n~~~~  308 (347)
                      +++|+.|++++|++++
T Consensus       216 l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          216 TSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CTTCCEEEEEEEEEEC
T ss_pred             CCCCCEEEccCCeeec
Confidence            6666666666666655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=4.4e-23  Score=181.19  Aligned_cols=260  Identities=20%  Similarity=0.203  Sum_probs=131.7

Q ss_pred             EEecCCCCC-CCChhhhcCCCccEEeccCCcccccCC----hhhhhcCCC-cccEEEcCCCcCCCCCCCCCCCCcEEEcc
Q 040206            5 TQVKTCNIS-EFPDILRTQHQLEWLDLSKNQIRGRIP----SWMWDIGVH-TLQFLILSQNVLTSIDHLPWKNLQYLTLD   78 (347)
Q Consensus         5 l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~L~~L~l~   78 (347)
                      ..++.+.++ .+|+.+...++|++|++++|.+++..+    ..+..  ++ +|++|++++|.++......+..       
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~~L~~L~Ls~N~l~~~~~~~l~~-------   73 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFAN--TPASVTSLNLSGNSLGFKNSDELVQ-------   73 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHT--CCTTCCEEECCSSCGGGSCHHHHHH-------
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHh--CCCceeEEECcCCCCCHHHHHHHHH-------
Confidence            456666666 344444444557777777777764444    22322  24 4555555555444432211000       


Q ss_pred             CCCCCccCCCCCCCccEEEcccCcccccCCcc----ccCC-CCccEEEcccCcccccCCccc-----C-CccccEEECCC
Q 040206           79 SNLLQGSLPDLPPHMVQLLISNNSLTGEIPSS----FCNL-SSIQYLNLSNNSLSGQIPQCL-----G-NSTLETLDLGM  147 (347)
Q Consensus        79 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~-----~-~~~L~~L~l~~  147 (347)
                            .....+++|++|++++|.+....+..    +..+ ++|++|++++|.+.......+     . ..+|++|++++
T Consensus        74 ------~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  147 (362)
T 3goz_A           74 ------ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG  147 (362)
T ss_dssp             ------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred             ------HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence                  00111256778888888877554443    3333 678888888887765443322     1 23677777777


Q ss_pred             Ccccccc----CccCCCCC-CccEEEccCCcccCCCcccc----ccC-CCCcEEEccCCcccCC----CCccccC-CCCC
Q 040206          148 NNFQGSI----PQTNAKGC-NLTSLRLSGNHLEGPLPPSL----INC-VNLQFLDVGNNNLSGP----IPECLGN-STRL  212 (347)
Q Consensus       148 ~~~~~~~----~~~~~~~~-~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~n~~~~~----~~~~l~~-~~~L  212 (347)
                      |.+....    +..+...+ +|++|++++|.++...+..+    ..+ ++|++|++++|.+.+.    ++..+.. .++|
T Consensus       148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L  227 (362)
T 3goz_A          148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV  227 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred             CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence            7665322    12222333 66666666666654444322    233 3666666666666532    2223333 3366


Q ss_pred             CeEEecCCccccCcCccc-----cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCc
Q 040206          213 SFLDVGNNSLSGPIPECL-----ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT  285 (347)
Q Consensus       213 ~~L~l~~~~~~~~~~~~~-----~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~  285 (347)
                      +.|++++|.+.+.....+     ..++|+.|++++|.+.+..+...      ..++..+..+++|+.|++++|.+.+.
T Consensus       228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~------~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC------KALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH------HHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH------HHHHHHhccCCceEEEecCCCcCCCc
Confidence            666666666554333111     11456666666665443222211      11233444555566666666665543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=2.3e-20  Score=155.35  Aligned_cols=179  Identities=21%  Similarity=0.170  Sum_probs=130.5

Q ss_pred             CccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccC
Q 040206          116 SIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGN  195 (347)
Q Consensus       116 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  195 (347)
                      ..+++++.++.+...+...  .+.++.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            4556666666666443322  24677777777777666666677777888888888877766666677778888888888


Q ss_pred             CcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcE
Q 040206          196 NNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEV  274 (347)
Q Consensus       196 n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~  274 (347)
                      |.+.+..+..+..+++|+.|++++|.+++..+..+. .++|+.|++++|.+.+.             .+..+..+++|++
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~  159 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-------------PAGAFDKLTNLQT  159 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCCE
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-------------CHHHcCcCcCCCE
Confidence            888766666777788888888888887765555433 47888888888888742             1225777888888


Q ss_pred             EEccCCccCCccchhhhhccCCCEEEcccceeecc
Q 040206          275 LDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP  309 (347)
Q Consensus       275 L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~  309 (347)
                      |++++|.+.+..+..+..+++|+.|++++|++.+.
T Consensus       160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            88888888877777788888888888888888776

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=3e-21  Score=165.85  Aligned_cols=219  Identities=21%  Similarity=0.191  Sum_probs=160.6

Q ss_pred             CCcEEEccCCCCCccCCC------CCCCccEEEcccCcccccCCccc--cCCCCccEEEcccCcccccCCc-----ccCC
Q 040206           71 NLQYLTLDSNLLQGSLPD------LPPHMVQLLISNNSLTGEIPSSF--CNLSSIQYLNLSNNSLSGQIPQ-----CLGN  137 (347)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~-----~~~~  137 (347)
                      .++.+.+.++.++.....      ..++|++|++++|.+....+..+  ..+++|++|++++|.+....+.     ...+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            466777777666421110      12568888888888887777776  7888899999999888753331     1246


Q ss_pred             ccccEEECCCCccccccCccCCCCCCccEEEccCCcccCC----CccccccCCCCcEEEccCCcccCCCCc----cccCC
Q 040206          138 STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDVGNNNLSGPIPE----CLGNS  209 (347)
Q Consensus       138 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~----~l~~~  209 (347)
                      ++|++|++++|.+....+..+..+++|++|++++|++...    .+..++.+++|++|++++|.+.. .+.    .+..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence            6899999999988777778888889999999999986421    12234678899999999998863 222    24678


Q ss_pred             CCCCeEEecCCccccCcCcccc-c---cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCc
Q 040206          210 TRLSFLDVGNNSLSGPIPECLA-N---STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT  285 (347)
Q Consensus       210 ~~L~~L~l~~~~~~~~~~~~~~-~---~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~  285 (347)
                      ++|++|++++|.+.+..+..+. .   ++|++|++++|.++ .             +|..+.  ++|++|++++|++++.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~-------------lp~~~~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-Q-------------VPKGLP--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-S-------------CCSCCC--SCCSCEECCSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-c-------------hhhhhc--CCCCEEECCCCcCCCC
Confidence            8999999999998876443322 2   68999999999998 3             343332  6899999999999875


Q ss_pred             cchhhhhccCCCEEEcccceeec
Q 040206          286 FLYWLDVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       286 ~~~~~~~l~~L~~l~L~~n~~~~  308 (347)
                      +.  +..+++|+.|++++|++++
T Consensus       288 ~~--~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          288 PQ--PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CC--TTSCCCCSCEECSSTTTSC
T ss_pred             ch--hhhCCCccEEECcCCCCCC
Confidence            33  5788999999999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.9e-20  Score=159.42  Aligned_cols=192  Identities=20%  Similarity=0.208  Sum_probs=109.7

Q ss_pred             hhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccC-CCCCCCccEE
Q 040206           19 LRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSL-PDLPPHMVQL   96 (347)
Q Consensus        19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L   96 (347)
                      ..++++|+.|++++|.+. .++ .+.  .+++|+.|++++|.++.++. ..+++|++|++++|.+.... ...+++|++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~-~~~--~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L  112 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE-GVQ--YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTL  112 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGG--GCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEE
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch-hhh--ccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEE
Confidence            566788888888888887 454 344  34888888888888887765 56677888888777766432 1113555666


Q ss_pred             EcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccC
Q 040206           97 LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG  176 (347)
Q Consensus        97 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  176 (347)
                      ++++|.+... + .+..+++|+.|++++|.+....+ ...+++|+.|++++|.+.... . +..+++|+.|++++|.++.
T Consensus       113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-P-LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC
T ss_pred             ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh-h-hcCCCCCCEEECCCCccCc
Confidence            6666655532 1 25556666666666665553322 333445555555555554221 1 4455555555555555542


Q ss_pred             CCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206          177 PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       177 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                      ..  .+..+++|++|++++|.+.+..  .+..+++|+.|++++|.++
T Consensus       188 ~~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          188 IS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             Ch--hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            21  1445555555555555554322  2445555555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=1.3e-22  Score=178.24  Aligned_cols=255  Identities=22%  Similarity=0.186  Sum_probs=186.3

Q ss_pred             EEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-------CCCC-CCcEEEccCCCCCccCCCCCCCccEEEc
Q 040206           27 WLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-------LPWK-NLQYLTLDSNLLQGSLPDLPPHMVQLLI   98 (347)
Q Consensus        27 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-------~~~~-~L~~L~l~~~~~~~~~~~~~~~L~~L~l   98 (347)
                      .++++.+.+++.+|..+...  ++|++|++++|.+++.+.       ..++ +|++|++++|.++.....          
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----------   69 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIP--HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD----------   69 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSC--TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH----------
T ss_pred             ccccccccchHHHHHHHhCC--CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH----------
Confidence            46788999987777666443  569999999999988875       3456 899999999988743221          


Q ss_pred             ccCcccccCCccccCC-CCccEEEcccCcccccCCccc-----CC-ccccEEECCCCccccccCcc----CCC-CCCccE
Q 040206           99 SNNSLTGEIPSSFCNL-SSIQYLNLSNNSLSGQIPQCL-----GN-STLETLDLGMNNFQGSIPQT----NAK-GCNLTS  166 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~-----~~-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~  166 (347)
                             .....+... ++|++|++++|.+....+..+     .. ++|++|++++|.+....+..    +.. .++|++
T Consensus        70 -------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  142 (362)
T 3goz_A           70 -------ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS  142 (362)
T ss_dssp             -------HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred             -------HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence                   111122233 899999999999886554422     33 68999999999987544433    333 369999


Q ss_pred             EEccCCcccCCCccc----cccCC-CCcEEEccCCcccCCCCc----cccCC-CCCCeEEecCCccccCcCcccc-----
Q 040206          167 LRLSGNHLEGPLPPS----LINCV-NLQFLDVGNNNLSGPIPE----CLGNS-TRLSFLDVGNNSLSGPIPECLA-----  231 (347)
Q Consensus       167 L~l~~~~~~~~~~~~----l~~~~-~L~~L~l~~n~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~~~~~~-----  231 (347)
                      |++++|.++...+..    +...+ +|++|++++|.+.+..+.    .+..+ ++|+.|++++|.+.+.....+.     
T Consensus       143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~  222 (362)
T 3goz_A          143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS  222 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred             EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence            999999998654433    34454 999999999999865554    34455 5999999999999874433222     


Q ss_pred             -ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccch-------hhhhccCCCEEEccc
Q 040206          232 -NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLY-------WLDVLLQLQVLILRS  303 (347)
Q Consensus       232 -~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~-------~~~~l~~L~~l~L~~  303 (347)
                       .++|+.|++++|.+.+..+..+         ...+..+++|++|++++|.+.+....       .+..+++|+.||+++
T Consensus       223 ~~~~L~~L~Ls~N~l~~~~~~~l---------~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~  293 (362)
T 3goz_A          223 IPNHVVSLNLCLNCLHGPSLENL---------KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG  293 (362)
T ss_dssp             SCTTCCEEECCSSCCCCCCHHHH---------HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred             CCCCceEEECcCCCCCcHHHHHH---------HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence             2589999999999997655532         23567788999999999996543332       345677899999999


Q ss_pred             ceeecc
Q 040206          304 NRFWGP  309 (347)
Q Consensus       304 n~~~~~  309 (347)
                      |++.+.
T Consensus       294 N~l~~~  299 (362)
T 3goz_A          294 KEIHPS  299 (362)
T ss_dssp             CBCCGG
T ss_pred             CcCCCc
Confidence            999876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=1.6e-19  Score=150.24  Aligned_cols=149  Identities=20%  Similarity=0.227  Sum_probs=63.7

Q ss_pred             cEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccc
Q 040206           73 QYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQ  151 (347)
Q Consensus        73 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  151 (347)
                      ++++++++.+...+...+++++.|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|++|++++|.+.
T Consensus        17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   96 (251)
T 3m19_A           17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA   96 (251)
T ss_dssp             TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence            344444444443333333444555555555544444455555666666665555554333322 2334444444444443


Q ss_pred             cccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCc
Q 040206          152 GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNS  221 (347)
Q Consensus       152 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  221 (347)
                      ...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus        97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence            3333333344444444444444433322233334444444444444433322233333333333333333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=4.5e-20  Score=152.51  Aligned_cols=148  Identities=20%  Similarity=0.194  Sum_probs=76.1

Q ss_pred             CCccEEEccc-CcccccCCccccCCCCccEEEcccCcccccCCcccCCcccc---EEECCCC-ccccccCccCCCCCCcc
Q 040206           91 PHMVQLLISN-NSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLE---TLDLGMN-NFQGSIPQTNAKGCNLT  165 (347)
Q Consensus        91 ~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~  165 (347)
                      ++|++|++++ |.++...+..|.++++|++|++++|.+...+ .+...++|+   .|++++| .+....+..+..+++|+
T Consensus        80 ~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~  158 (239)
T 2xwt_C           80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET  158 (239)
T ss_dssp             TTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred             cCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc-ccccccccccccEEECCCCcchhhcCcccccchhcce
Confidence            4455555554 5555444455666666666666666665432 233344444   6666666 55544444455566666


Q ss_pred             -EEEccCCcccCCCccccccCCCCcEEEccCCc-ccCCCCccccCC-CCCCeEEecCCccccCcCccccccCCcEEEccc
Q 040206          166 -SLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN-LSGPIPECLGNS-TRLSFLDVGNNSLSGPIPECLANSTLEILDMRM  242 (347)
Q Consensus       166 -~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~  242 (347)
                       ++++++|.++...+..+.. ++|+.|++++|. +.+..+..+..+ ++|+.|++++|.++.....  ..++|+.|++++
T Consensus       159 ~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~  235 (239)
T 2xwt_C          159 LTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN  235 (239)
T ss_dssp             EEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred             eEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence             6666666555322223333 556666666663 554444455555 5555555555555432222  223444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=5e-22  Score=172.84  Aligned_cols=231  Identities=17%  Similarity=0.165  Sum_probs=151.0

Q ss_pred             CCCcEEEccCCCCCccCCCC--CCCccEEEcccCccccc-CCccccCCCCccEEEcccCcccccCCcc-cCCccccEEEC
Q 040206           70 KNLQYLTLDSNLLQGSLPDL--PPHMVQLLISNNSLTGE-IPSSFCNLSSIQYLNLSNNSLSGQIPQC-LGNSTLETLDL  145 (347)
Q Consensus        70 ~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l  145 (347)
                      ++++.|+++++.+.+.....  +++|++|++++|.+... .+..+..+++|++|++++|.+....+.. ..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            44555555555544333322  25666666666665533 5556677777888887777665433322 24567888888


Q ss_pred             CCC-cccc-ccCccCCCCCCccEEEccCC-cccCC-CccccccCC-CCcEEEccCCc--cc-CCCCccccCCCCCCeEEe
Q 040206          146 GMN-NFQG-SIPQTNAKGCNLTSLRLSGN-HLEGP-LPPSLINCV-NLQFLDVGNNN--LS-GPIPECLGNSTRLSFLDV  217 (347)
Q Consensus       146 ~~~-~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~n~--~~-~~~~~~l~~~~~L~~L~l  217 (347)
                      ++| .+.. ..+..+..+++|++|++++| .++.. .+..+..++ +|++|++++|.  +. +..+..+..+++|+.|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            877 4443 24445666788888888888 77632 345577788 89999999884  43 344566778889999999


Q ss_pred             cCCc-cccCcCccc-cccCCcEEEcccCc-ccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhcc
Q 040206          218 GNNS-LSGPIPECL-ANSTLEILDMRMNK-FSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLL  294 (347)
Q Consensus       218 ~~~~-~~~~~~~~~-~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~  294 (347)
                      ++|. +++.....+ ..++|+.|++++|. +...             ....+..+++|++|++++| +++.....+.  .
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-------------~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~  293 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE-------------TLLELGEIPTLKTLQVFGI-VPDGTLQLLK--E  293 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG-------------GGGGGGGCTTCCEEECTTS-SCTTCHHHHH--H
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH-------------HHHHHhcCCCCCEEeccCc-cCHHHHHHHH--h
Confidence            9988 554444333 34889999999985 3321             1124677999999999999 5543333332  2


Q ss_pred             CCCEEEcccceeecccCCcccc
Q 040206          295 QLQVLILRSNRFWGPIGKLRSR  316 (347)
Q Consensus       295 ~L~~l~L~~n~~~~~~~~~~~~  316 (347)
                      .+..|++++|.+++..|.....
T Consensus       294 ~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          294 ALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             HSTTSEESCCCSCCTTCSSCSS
T ss_pred             hCcceEEecccCccccCCcccc
Confidence            4666678999999988876554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=6.9e-22  Score=171.97  Aligned_cols=216  Identities=19%  Similarity=0.174  Sum_probs=114.6

Q ss_pred             ccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEccCCCCCcc----CCCCCCCccEEEc
Q 040206           25 LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLDSNLLQGS----LPDLPPHMVQLLI   98 (347)
Q Consensus        25 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~~~~~~~~----~~~~~~~L~~L~l   98 (347)
                      ++.++++++.+..   ..+.....+.++.++++++.++....  ..+++|++|++++|.+...    ....+++|++|++
T Consensus        49 ~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           49 WQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             SSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             heeeccccccCCH---HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            5555555555442   11111111455566666555554433  3445566666666654421    1223356666666


Q ss_pred             ccCcccccCCccccCCCCccEEEcccC-ccccc-CCc-ccCCccccEEECCCC-ccccc-cCccCCCCC-CccEEEccCC
Q 040206           99 SNNSLTGEIPSSFCNLSSIQYLNLSNN-SLSGQ-IPQ-CLGNSTLETLDLGMN-NFQGS-IPQTNAKGC-NLTSLRLSGN  172 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~-~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~  172 (347)
                      ++|.+.+..+..+..+++|++|++++| .++.. .+. ...+++|++|++++| .+... .+..+..++ +|++|++++|
T Consensus       126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            666655445555666666666666666 34421 111 224456666666666 55432 344455556 6777777666


Q ss_pred             c--cc-CCCccccccCCCCcEEEccCCc-ccCCCCccccCCCCCCeEEecCCc-cccCcC-ccccccCCcEEEcccC
Q 040206          173 H--LE-GPLPPSLINCVNLQFLDVGNNN-LSGPIPECLGNSTRLSFLDVGNNS-LSGPIP-ECLANSTLEILDMRMN  243 (347)
Q Consensus       173 ~--~~-~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~L~~L~L~~~  243 (347)
                      .  ++ ...+..+..+++|+.|++++|. +.+..+..+..+++|+.|++++|. +..... .....++|+.|++++|
T Consensus       206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            3  32 1233445566777777777776 444445566666777777777663 222211 1222366777777766

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=161.64  Aligned_cols=222  Identities=20%  Similarity=0.207  Sum_probs=168.7

Q ss_pred             cCCCccEEeccCCcccccCChhhh-hcCCCcccEEEcCCCcCCCCCC-----CCCCCCcEEEccCCCCCccCC-------
Q 040206           21 TQHQLEWLDLSKNQIRGRIPSWMW-DIGVHTLQFLILSQNVLTSIDH-----LPWKNLQYLTLDSNLLQGSLP-------   87 (347)
Q Consensus        21 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~~~~~~~~~~-------   87 (347)
                      +...++.+.+.++.++......+. ...+++|++|++++|.++....     ..+++|++|++++|.+....+       
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            345578888888877633222111 1133779999999998876554     346889999999999886333       


Q ss_pred             CCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccc---cCCcc--cCCccccEEECCCCccccccCc----cC
Q 040206           88 DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG---QIPQC--LGNSTLETLDLGMNNFQGSIPQ----TN  158 (347)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~--~~~~~L~~L~l~~~~~~~~~~~----~~  158 (347)
                      ..+++|++|++++|.+....+..+..+++|++|++++|.+..   .....  ..+++|++|++++|.+. ..+.    .+
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~  220 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA  220 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH
Confidence            235899999999999988888889999999999999998653   22222  25678999999999886 2232    24


Q ss_pred             CCCCCccEEEccCCcccCCCccccccC---CCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCC
Q 040206          159 AKGCNLTSLRLSGNHLEGPLPPSLINC---VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTL  235 (347)
Q Consensus       159 ~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  235 (347)
                      ..+++|++|++++|.++...|..+..+   ++|++|++++|.+. .+|..+.  ++|+.|++++|.+++. +.....++|
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L  296 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEV  296 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCC
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCc
Confidence            667899999999999987767677666   69999999999998 5566654  7999999999999864 333444899


Q ss_pred             cEEEcccCcccc
Q 040206          236 EILDMRMNKFSG  247 (347)
Q Consensus       236 ~~L~L~~~~~~~  247 (347)
                      +.|++++|.+++
T Consensus       297 ~~L~L~~N~l~~  308 (310)
T 4glp_A          297 DNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECSSTTTSC
T ss_pred             cEEECcCCCCCC
Confidence            999999999885

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.83  E-value=6.7e-22  Score=185.11  Aligned_cols=42  Identities=17%  Similarity=0.088  Sum_probs=31.8

Q ss_pred             CCCCCcEEEccCCccCCc-cchhhhhccCCCEEEcccceeecc
Q 040206          268 NCQYLEVLDVGNNQIDDT-FLYWLDVLLQLQVLILRSNRFWGP  309 (347)
Q Consensus       268 ~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~l~L~~n~~~~~  309 (347)
                      .+++|++|++++|.+++. .+..+..+++|+.|++++|++++.
T Consensus       461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  503 (592)
T 3ogk_B          461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER  503 (592)
T ss_dssp             SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred             hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence            477888888888887753 344556788999999999987654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=2e-21  Score=181.92  Aligned_cols=296  Identities=15%  Similarity=0.112  Sum_probs=157.1

Q ss_pred             CceEEEecCCCCC-CCChhhh-cCCCccEEeccCC-cccccCChhhhhcCCCcccEEEcCCCcCCCCCC-------CCCC
Q 040206            1 KTIKTQVKTCNIS-EFPDILR-TQHQLEWLDLSKN-QIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-------LPWK   70 (347)
Q Consensus         1 ~l~~l~l~~~~~~-~~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-------~~~~   70 (347)
                      +|++|++++|.+. ..+..+. .+++|++|++++| .+.+.....+.. .+++|++|++++|.+++...       ..++
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA-TCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHH-HCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHH-hCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            3677888887766 3334443 6778888888877 454333333333 44778888888776555332       2455


Q ss_pred             CCcEEEccCCC--CCcc----CCCCCCCccEEEcccCc------------------------------------------
Q 040206           71 NLQYLTLDSNL--LQGS----LPDLPPHMVQLLISNNS------------------------------------------  102 (347)
Q Consensus        71 ~L~~L~l~~~~--~~~~----~~~~~~~L~~L~l~~~~------------------------------------------  102 (347)
                      +|++|++++|.  +...    ....+++|++|++++|.                                          
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~  264 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC  264 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence            77777777665  2110    00112556666665541                                          


Q ss_pred             --------ccc----cCCccccCCCCccEEEcccCcccccCCc--ccCCccccEEECCCCccccccCccCCCCCCccEEE
Q 040206          103 --------LTG----EIPSSFCNLSSIQYLNLSNNSLSGQIPQ--CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLR  168 (347)
Q Consensus       103 --------~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  168 (347)
                              +..    ..+..+..+++|++|++++|.+......  ...+++|++|++++|......+.....+++|++|+
T Consensus       265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~  344 (594)
T 2p1m_B          265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELR  344 (594)
T ss_dssp             TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred             CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEE
Confidence                    000    0111112356777777777765422111  11345666666666511111111111234455554


Q ss_pred             c----------------------------------cCCcccCCCccccc-cCCCCcEEEcc--C----CcccCC-----C
Q 040206          169 L----------------------------------SGNHLEGPLPPSLI-NCVNLQFLDVG--N----NNLSGP-----I  202 (347)
Q Consensus       169 l----------------------------------~~~~~~~~~~~~l~-~~~~L~~L~l~--~----n~~~~~-----~  202 (347)
                      +                                  ..+.++......+. .+++|+.|+++  +    +.+.+.     .
T Consensus       345 L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~  424 (594)
T 2p1m_B          345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF  424 (594)
T ss_dssp             EECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH
T ss_pred             EecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHH
Confidence            4                                  33333322222222 35666666666  2    223211     1


Q ss_pred             CccccCCCCCCeEEecCCccccCcCcccc--ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCC
Q 040206          203 PECLGNSTRLSFLDVGNNSLSGPIPECLA--NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNN  280 (347)
Q Consensus       203 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n  280 (347)
                      +..+..+++|+.|++++ .+++.....+.  .++|+.|++++|.+++..+..            ....+++|++|++++|
T Consensus       425 ~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~------------l~~~~~~L~~L~L~~n  491 (594)
T 2p1m_B          425 GAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH------------VLSGCDSLRKLEIRDC  491 (594)
T ss_dssp             HHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH------------HHHHCTTCCEEEEESC
T ss_pred             HHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHH------------HHhcCCCcCEEECcCC
Confidence            11244556666666655 33332222222  367888888887776543221            1356889999999999


Q ss_pred             ccCCccch-hhhhccCCCEEEcccceeeccc
Q 040206          281 QIDDTFLY-WLDVLLQLQVLILRSNRFWGPI  310 (347)
Q Consensus       281 ~i~~~~~~-~~~~l~~L~~l~L~~n~~~~~~  310 (347)
                      .+++.... .+..+++|+.|++++|+++...
T Consensus       492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  522 (594)
T 2p1m_B          492 PFGDKALLANASKLETMRSLWMSSCSVSFGA  522 (594)
T ss_dssp             SCCHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred             CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence            98654443 4456899999999999986543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=6e-21  Score=169.18  Aligned_cols=232  Identities=18%  Similarity=0.209  Sum_probs=139.9

Q ss_pred             CceEEEecCCCCCC-----CChhhhcCCCccEEeccCCc---ccccCChhhhh-----cCCCcccEEEcCCCcCCCCCC-
Q 040206            1 KTIKTQVKTCNISE-----FPDILRTQHQLEWLDLSKNQ---IRGRIPSWMWD-----IGVHTLQFLILSQNVLTSIDH-   66 (347)
Q Consensus         1 ~l~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~-   66 (347)
                      .+++|+|++|.+..     ++.++.++++|++|++++|.   +.+.+|..+..     ..+++|++|++++|.++.... 
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence            47899999998882     44557799999999999974   44455555421     145888899998888876322 


Q ss_pred             ------CCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCC---------CCccEEEcccCcccc-c
Q 040206           67 ------LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNL---------SSIQYLNLSNNSLSG-Q  130 (347)
Q Consensus        67 ------~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---------~~L~~L~l~~~~~~~-~  130 (347)
                            ..+++|++|++++|.++......                 ++..+..+         ++|++|++++|.+.. .
T Consensus       113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~-----------------l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~  175 (386)
T 2ca6_A          113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAK-----------------IARALQELAVNKKAKNAPPLRSIICGRNRLENGS  175 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHH-----------------HHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             HHHHHHHhCCCCCEEECcCCCCCHHHHHH-----------------HHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence                  34577777777777765221110                 11111112         455555555554431 1


Q ss_pred             CC----cccCCccccEEECCCCcccc-----ccCccCCCCCCccEEEccCCccc----CCCccccccCCCCcEEEccCCc
Q 040206          131 IP----QCLGNSTLETLDLGMNNFQG-----SIPQTNAKGCNLTSLRLSGNHLE----GPLPPSLINCVNLQFLDVGNNN  197 (347)
Q Consensus       131 ~~----~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~n~  197 (347)
                      .+    ....+++|++|++++|.+..     ..+..+..+++|++|++++|.++    ...+..+..+++|+.|++++|.
T Consensus       176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            11    11123455556665555431     22225556667777777777664    2445566677777777777777


Q ss_pred             ccCC----CCcccc--CCCCCCeEEecCCcccc----CcCccc-c-ccCCcEEEcccCcccccC
Q 040206          198 LSGP----IPECLG--NSTRLSFLDVGNNSLSG----PIPECL-A-NSTLEILDMRMNKFSGSL  249 (347)
Q Consensus       198 ~~~~----~~~~l~--~~~~L~~L~l~~~~~~~----~~~~~~-~-~~~L~~L~L~~~~~~~~~  249 (347)
                      +.+.    ++..+.  .+++|+.|++++|.++.    ..+..+ . .++|+.|++++|.+++..
T Consensus       256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            7643    334443  37778888888777775    233333 2 377888888888877654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.9e-18  Score=139.58  Aligned_cols=172  Identities=21%  Similarity=0.184  Sum_probs=116.7

Q ss_pred             EEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccc
Q 040206           74 YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQG  152 (347)
Q Consensus        74 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~  152 (347)
                      .++.+++.+...+...++++++|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|++|++++|.+..
T Consensus        11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~   90 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS   90 (208)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence            44455555554444445566666666666665555566777888888888887776555443 45677777777777765


Q ss_pred             ccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccc
Q 040206          153 SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN  232 (347)
Q Consensus       153 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  232 (347)
                      ..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+...      .
T Consensus        91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~  164 (208)
T 2o6s_A           91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------C  164 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC------T
T ss_pred             cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC------C
Confidence            5555567777888888888877755555567778888888888877766555677778888888887765532      2


Q ss_pred             cCCcEEEcccCcccccCCh
Q 040206          233 STLEILDMRMNKFSGSLPQ  251 (347)
Q Consensus       233 ~~L~~L~L~~~~~~~~~~~  251 (347)
                      +.|+.|+++.|.+++.+|.
T Consensus       165 ~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          165 PGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             TTTHHHHHHHHHCTTTBBC
T ss_pred             CCHHHHHHHHHhCCceeec
Confidence            4667777777777766554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.79  E-value=2.5e-21  Score=181.36  Aligned_cols=321  Identities=15%  Similarity=0.073  Sum_probs=178.6

Q ss_pred             CceEEEecCCCCC----CC------------ChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCC-cCCC
Q 040206            1 KTIKTQVKTCNIS----EF------------PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN-VLTS   63 (347)
Q Consensus         1 ~l~~l~l~~~~~~----~~------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~   63 (347)
                      +++++++++|...    ..            +.....+++|+.|++++|.+++..+..+.. .+++|++|++++| .++.
T Consensus        67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~  145 (594)
T 2p1m_B           67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAK-SFKNFKVLVLSSCEGFST  145 (594)
T ss_dssp             TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHH-HCTTCCEEEEESCEEEEH
T ss_pred             CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCH
Confidence            4788999987522    11            234568999999999999998777777764 4699999999998 5544


Q ss_pred             C--CC--CCCCCCcEEEccCCCCCcc-------CCCCCCCccEEEcccCc--ccc-cCCccccCCCCccEEEcccCc-cc
Q 040206           64 I--DH--LPWKNLQYLTLDSNLLQGS-------LPDLPPHMVQLLISNNS--LTG-EIPSSFCNLSSIQYLNLSNNS-LS  128 (347)
Q Consensus        64 ~--~~--~~~~~L~~L~l~~~~~~~~-------~~~~~~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~~~-~~  128 (347)
                      .  ..  ..+++|++|++++|.++..       ....+++|++|+++++.  +.. .....+..+++|+.|++.+|. +.
T Consensus       146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~  225 (594)
T 2p1m_B          146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE  225 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred             HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence            2  22  3679999999999986542       22345799999999986  221 111223446888888888762 11


Q ss_pred             ccCCccc------------------------------------------------------CCccccEEECCCCccccc-
Q 040206          129 GQIPQCL------------------------------------------------------GNSTLETLDLGMNNFQGS-  153 (347)
Q Consensus       129 ~~~~~~~------------------------------------------------------~~~~L~~L~l~~~~~~~~-  153 (347)
                      .......                                                      .+++|++|++++|.+... 
T Consensus       226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~  305 (594)
T 2p1m_B          226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD  305 (594)
T ss_dssp             HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH
T ss_pred             HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH
Confidence            1000000                                                      124555666665553321 


Q ss_pred             cCccCCCCCCccEEEccCCcccCC-CccccccCCCCcEEEccC---------CcccCCCCccc-cCCCCCCeEEecCCcc
Q 040206          154 IPQTNAKGCNLTSLRLSGNHLEGP-LPPSLINCVNLQFLDVGN---------NNLSGPIPECL-GNSTRLSFLDVGNNSL  222 (347)
Q Consensus       154 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~---------n~~~~~~~~~l-~~~~~L~~L~l~~~~~  222 (347)
                      ....+..+++|++|++.+| ++.. .+.....+++|++|++.+         +.+.+.....+ ..+++|+.|.+..+.+
T Consensus       306 l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l  384 (594)
T 2p1m_B          306 LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM  384 (594)
T ss_dssp             HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCC
T ss_pred             HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCc
Confidence            1112334556666666655 2211 111122356666666632         12221111111 2355666665555555


Q ss_pred             ccCcCcccc--ccCCcEEEcc--c----CcccccCCh-h----hhcccc------ccCCC----cCcc-CCCCCcEEEcc
Q 040206          223 SGPIPECLA--NSTLEILDMR--M----NKFSGSLPQ-N----ICKKLC------FGPLP----PSLV-NCQYLEVLDVG  278 (347)
Q Consensus       223 ~~~~~~~~~--~~~L~~L~L~--~----~~~~~~~~~-~----~~~~~~------~~~l~----~~~~-~~~~L~~L~L~  278 (347)
                      ++.....+.  .++|+.|+++  +    +.+++.... .    +.....      .+.+.    ..+. .+++|++|+++
T Consensus       385 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~  464 (594)
T 2p1m_B          385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVA  464 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             CHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeecc
Confidence            443332222  3567777776  2    233311000 0    000000      00000    1122 37889999999


Q ss_pred             CCccCCccchhh-hhccCCCEEEcccceeecccCC-ccccceeeeee
Q 040206          279 NNQIDDTFLYWL-DVLLQLQVLILRSNRFWGPIGK-LRSRWSGHFIV  323 (347)
Q Consensus       279 ~n~i~~~~~~~~-~~l~~L~~l~L~~n~~~~~~~~-~~~~~~~~~~~  323 (347)
                      +|.+++.....+ ..+++|+.|++++|++++.... .......+..+
T Consensus       465 ~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  511 (594)
T 2p1m_B          465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL  511 (594)
T ss_dssp             SCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred             CCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence            998876555444 6789999999999998654433 33334444433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=1.7e-18  Score=151.23  Aligned_cols=236  Identities=17%  Similarity=0.117  Sum_probs=147.8

Q ss_pred             cEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCC---CCCccEEEcccCcccccC-CccccCCCCccE-EEcccCc
Q 040206           52 QFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEI-PSSFCNLSSIQY-LNLSNNS  126 (347)
Q Consensus        52 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-L~l~~~~  126 (347)
                      ++++.+++.++.++..-.+++++|++++|+++......   +++|++|++++|.+.... +.+|.+++++++ +.+.+|.
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            56777777888877655577888888888887655433   477888888888765433 346677777665 4455567


Q ss_pred             ccccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccC-CcccCCCccccccC-CCCcEEEccCCcccCCCC
Q 040206          127 LSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSG-NHLEGPLPPSLINC-VNLQFLDVGNNNLSGPIP  203 (347)
Q Consensus       127 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~  203 (347)
                      +....+..+ .+++|+.|++++|.+....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.+.... 
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~-  170 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH-  170 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC-
T ss_pred             ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC-
Confidence            776655554 456788888888777655555555556677777754 34543444445544 35777888888777433 


Q ss_pred             ccccCCCCCCeEEecC-CccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCc
Q 040206          204 ECLGNSTRLSFLDVGN-NSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ  281 (347)
Q Consensus       204 ~~l~~~~~L~~L~l~~-~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~  281 (347)
                      .......+|+.+.+.+ |.++......+. .++|+.|++++|+++.              +|.  ..+.+|++|.+.++.
T Consensus       171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~--------------lp~--~~~~~L~~L~~l~~~  234 (350)
T 4ay9_X          171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS--------------LPS--YGLENLKKLRARSTY  234 (350)
T ss_dssp             TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC--------------CCS--SSCTTCCEEECTTCT
T ss_pred             hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc--------------cCh--hhhccchHhhhccCC
Confidence            3333455677777764 455544444433 3778888888887772              432  234556666665554


Q ss_pred             cCCccchhhhhccCCCEEEcccce
Q 040206          282 IDDTFLYWLDVLLQLQVLILRSNR  305 (347)
Q Consensus       282 i~~~~~~~~~~l~~L~~l~L~~n~  305 (347)
                      --+..|. +..+++|+.+++.++.
T Consensus       235 ~l~~lP~-l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          235 NLKKLPT-LEKLVALMEASLTYPS  257 (350)
T ss_dssp             TCCCCCC-TTTCCSCCEEECSCHH
T ss_pred             CcCcCCC-chhCcChhhCcCCCCc
Confidence            3333442 5677788888876543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=7.5e-18  Score=154.91  Aligned_cols=188  Identities=23%  Similarity=0.275  Sum_probs=105.2

Q ss_pred             cccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccc
Q 040206           50 TLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG  129 (347)
Q Consensus        50 ~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  129 (347)
                      +|+.|++++|.++.++..-+++|++|++++|.++..+ ..+++|++|++++|.++. +|. +..                
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~-ip~-l~~----------------  120 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-ELPASLEYLDACDNRLST-LPE-LPA----------------  120 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSC-CCC-CCT----------------
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCC-cch-hhc----------------
Confidence            6667777766666665544566666666666665333 334445555555554443 222 222                


Q ss_pred             cCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCC
Q 040206          130 QIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNS  209 (347)
Q Consensus       130 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~  209 (347)
                               +|+.|++++|.+.. +|.   .+++|+.|++++|.++. +|.   .+++|+.|++++|.+.+ +|. +.  
T Consensus       121 ---------~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--  179 (571)
T 3cvr_A          121 ---------SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--  179 (571)
T ss_dssp             ---------TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--
T ss_pred             ---------CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--
Confidence                     44555555554442 222   34555555555555553 232   34566666666666653 333 33  


Q ss_pred             CCCCeEEecCCccccCcCccccccCC-------cEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCcc
Q 040206          210 TRLSFLDVGNNSLSGPIPECLANSTL-------EILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI  282 (347)
Q Consensus       210 ~~L~~L~l~~~~~~~~~~~~~~~~~L-------~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i  282 (347)
                      ++|+.|++++|.++....  +.. +|       +.|++++|.++              .+|..+..+++|+.|+|++|.+
T Consensus       180 ~~L~~L~Ls~N~L~~lp~--~~~-~L~~~~~~L~~L~Ls~N~l~--------------~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          180 ESLEALDVSTNLLESLPA--VPV-RNHHSEETEIFFRCRENRIT--------------HIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             TTCCEEECCSSCCSSCCC--CC---------CCEEEECCSSCCC--------------CCCGGGGGSCTTEEEECCSSSC
T ss_pred             CCCCEEECcCCCCCchhh--HHH-hhhcccccceEEecCCCcce--------------ecCHHHhcCCCCCEEEeeCCcC
Confidence            566666666666653222  222 45       78888888777              3555566678888888888888


Q ss_pred             CCccchhhhhcc
Q 040206          283 DDTFLYWLDVLL  294 (347)
Q Consensus       283 ~~~~~~~~~~l~  294 (347)
                      ++..+..+..+.
T Consensus       243 ~~~~p~~l~~l~  254 (571)
T 3cvr_A          243 SSRIRESLSQQT  254 (571)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CCcCHHHHHHhh
Confidence            777776666653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=4.3e-18  Score=144.66  Aligned_cols=169  Identities=25%  Similarity=0.267  Sum_probs=79.6

Q ss_pred             CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEcc
Q 040206           91 PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLS  170 (347)
Q Consensus        91 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  170 (347)
                      ++|++|++++|.+...  ..+..+++|+.|++++|.+....+ ...+++|+.|++++|.+.. .                
T Consensus        46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~----------------  105 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-L----------------  105 (291)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-G----------------
T ss_pred             CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-C----------------
Confidence            4555555555555432  124455555555555555543332 3334445555555554432 1                


Q ss_pred             CCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCC
Q 040206          171 GNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLP  250 (347)
Q Consensus       171 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  250 (347)
                               ..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++. ......++|+.|++++|.+.+   
T Consensus       106 ---------~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~---  170 (291)
T 1h6t_A          106 ---------SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD---  170 (291)
T ss_dssp             ---------GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC---
T ss_pred             ---------hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc---
Confidence                     2244444555555555544422  2344445555555555544432 222223455555555555542   


Q ss_pred             hhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206          251 QNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       251 ~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~  308 (347)
                                 ++. +..+++|++|++++|.+++..  .+..+++|+.|++++|++..
T Consensus       171 -----------~~~-l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          171 -----------IVP-LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -----------CGG-GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred             -----------chh-hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccC
Confidence                       221 444555555555555555421  24555555555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=5.9e-18  Score=155.60  Aligned_cols=184  Identities=28%  Similarity=0.342  Sum_probs=143.1

Q ss_pred             CccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCcc
Q 040206           24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSL  103 (347)
Q Consensus        24 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~  103 (347)
                      +++.|++++|++++ +|..++    ++|++|++++|.++.++ ..+++|++|++++|.++..+. +..+|++|++++|.+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~----~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l  132 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP----PQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQL  132 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC----TTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCC
T ss_pred             CccEEEeCCCCCCc-cCHhHc----CCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcC
Confidence            88999999988874 666552    77999999999888888 677889999999998887554 556899999999988


Q ss_pred             cccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccc
Q 040206          104 TGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI  183 (347)
Q Consensus       104 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  183 (347)
                      +. +|.   .+++|+.|++++|.++..+.   ..++|+.|++++|.+.. +|. +.  ++|+.|++++|.++ .+|. +.
T Consensus       133 ~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~  199 (571)
T 3cvr_A          133 TM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VP  199 (571)
T ss_dssp             SC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC
T ss_pred             CC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HH
Confidence            85 444   57889999999998886443   46789999999998874 555 44  78999999999888 4454 44


Q ss_pred             cCCCC-------cEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccc
Q 040206          184 NCVNL-------QFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL  230 (347)
Q Consensus       184 ~~~~L-------~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  230 (347)
                      .  +|       +.|++++|.+. .+|..+..+++|+.|++++|.+++..+..+
T Consensus       200 ~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          200 V--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             ----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             H--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            3  66       99999999988 467777779999999999998876555433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=5.5e-18  Score=148.00  Aligned_cols=191  Identities=21%  Similarity=0.194  Sum_probs=92.5

Q ss_pred             EEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCC-CCCC---CCCCCcE-EEcc
Q 040206            4 KTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS-IDHL---PWKNLQY-LTLD   78 (347)
Q Consensus         4 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~---~~~~L~~-L~l~   78 (347)
                      .++.++++++.+|..+.  +++++|++++|+++ .+|...+. ++++|++|++++|.+.. ++..   .++++++ +.+.
T Consensus        13 ~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~-~i~~~~f~-~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDLP--RNAIELRFVLTKLR-VIQKGAFS-GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EEEEESTTCCSCCTTCC--TTCSEEEEESCCCS-EECTTSST-TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             EEEecCCCCCccCcCcC--CCCCEEEccCCcCC-CcCHHHHc-CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45566667777776552  56777777777776 45443332 44777777777776533 3332   2334333 3444


Q ss_pred             CCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEccc-CcccccCCccc-CCc-cccEEECCCCcccc
Q 040206           79 SNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN-NSLSGQIPQCL-GNS-TLETLDLGMNNFQG  152 (347)
Q Consensus        79 ~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~-~~~-~L~~L~l~~~~~~~  152 (347)
                      .|++....+..   +++|++|++++|.+....+..+....++..+++.+ +.+.......+ ... .++.|++++|.+. 
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence            45554433322   24555555555555543333344444455555533 23333332222 111 3455555555554 


Q ss_pred             ccCccCCCCCCccEEEccC-CcccCCCccccccCCCCcEEEccCCccc
Q 040206          153 SIPQTNAKGCNLTSLRLSG-NHLEGPLPPSLINCVNLQFLDVGNNNLS  199 (347)
Q Consensus       153 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~n~~~  199 (347)
                      .++.......+++++.+.+ +.++...+.+|..+++|+.|++++|.+.
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            2232223334555555543 3333232334455555555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=4.2e-18  Score=137.53  Aligned_cols=179  Identities=16%  Similarity=0.119  Sum_probs=125.8

Q ss_pred             EEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcc
Q 040206          119 YLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNL  198 (347)
Q Consensus       119 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  198 (347)
                      .++..++.+...+...  .+++++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+
T Consensus        11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            3444555444333222  23677777777777655555567777888888888877755555567778888888888887


Q ss_pred             cCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEc
Q 040206          199 SGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDV  277 (347)
Q Consensus       199 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L  277 (347)
                      .+..+..+..+++|+.|++++|.+++..+..+. .++|+.|++++|.+++.             .+..+..+++|++|++
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-------------~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-------------PDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCEEEC
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-------------CHHHhccCCCccEEEe
Confidence            766556677788888888888887765555433 47888888888888742             2234677888999999


Q ss_pred             cCCccCCccchhhhhccCCCEEEcccceeecccCCcccccee
Q 040206          278 GNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSG  319 (347)
Q Consensus       278 ~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~~  319 (347)
                      ++|.+.+       .+++|++|++++|.++|.+|..+.....
T Consensus       156 ~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          156 HDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             cCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            9987653       4568888999999999988887766554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=1e-17  Score=137.18  Aligned_cols=156  Identities=24%  Similarity=0.215  Sum_probs=108.9

Q ss_pred             cccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEec
Q 040206          139 TLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVG  218 (347)
Q Consensus       139 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  218 (347)
                      +-+.++.+++.+. .+|..+  .++|++|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus        20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            3455666666554 444433  2567777777777776666667777777777777777765555566777777777777


Q ss_pred             CCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCC
Q 040206          219 NNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQ  297 (347)
Q Consensus       219 ~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~  297 (347)
                      +|.++...+..+. .++|+.|++++|.+.              .+|..+..+++|++|++++|.+....+..+..+++|+
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  162 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT--------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT  162 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc--------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence            7777755554433 467777888877777              3555677788888888888888876666777888888


Q ss_pred             EEEcccceeecccC
Q 040206          298 VLILRSNRFWGPIG  311 (347)
Q Consensus       298 ~l~L~~n~~~~~~~  311 (347)
                      .|++++|++.+..+
T Consensus       163 ~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          163 HAYLFGNPWDCECR  176 (229)
T ss_dssp             EEECTTSCBCTTBG
T ss_pred             EEEeeCCCccCCcc
Confidence            88888888877654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=1.4e-17  Score=135.54  Aligned_cols=155  Identities=19%  Similarity=0.213  Sum_probs=106.0

Q ss_pred             cEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCC
Q 040206          141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNN  220 (347)
Q Consensus       141 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~  220 (347)
                      +.++++++.+. .+|..+.  +.++.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            44555555554 3343332  46667777777666555556666777777777777776665667777777777777777


Q ss_pred             ccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEE
Q 040206          221 SLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVL  299 (347)
Q Consensus       221 ~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l  299 (347)
                      .++...+..+. .++|+.|+|++|.+.+.             .+..|..+++|++|+|++|.+++..+..+..+++|+.|
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCL-------------RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM  157 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEe-------------CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence            77655544433 36777777777777743             23457778888888888888888777778888888888


Q ss_pred             EcccceeecccC
Q 040206          300 ILRSNRFWGPIG  311 (347)
Q Consensus       300 ~L~~n~~~~~~~  311 (347)
                      ++++|++.....
T Consensus       158 ~L~~N~~~c~c~  169 (220)
T 2v9t_B          158 HLAQNPFICDCH  169 (220)
T ss_dssp             ECCSSCEECSGG
T ss_pred             EeCCCCcCCCCc
Confidence            888888876543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=1.3e-17  Score=146.29  Aligned_cols=179  Identities=24%  Similarity=0.196  Sum_probs=100.2

Q ss_pred             EEEcccCcccccCCcccCCccccEEECCCCccccccCccCC-CCCCccEEEccCCcccCCCccccccCCCCcEEEccCCc
Q 040206          119 YLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNA-KGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN  197 (347)
Q Consensus       119 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  197 (347)
                      .++++++.+...+...  ...++.|++++|.+....+..+. .+++|++|++++|.++...+..+..+++|++|++++|.
T Consensus        22 ~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             EEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            4444444444322211  12355555555555544444444 55666666666666654444555666666666666666


Q ss_pred             ccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEE
Q 040206          198 LSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLD  276 (347)
Q Consensus       198 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~  276 (347)
                      +....+..+..+++|+.|++++|.+....+..+. .++|+.|+|++|.++. +|...         ...+..+++|+.|+
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~---------~~~~~~l~~L~~L~  169 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVEL---------IKDGNKLPKLMLLD  169 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGG---------TC----CTTCCEEE
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHH---------hcCcccCCcCCEEE
Confidence            6544445556666666666666666544433332 2566666666666663 11110         00114577788888


Q ss_pred             ccCCccCCccchhhhhccC--CCEEEcccceeecc
Q 040206          277 VGNNQIDDTFLYWLDVLLQ--LQVLILRSNRFWGP  309 (347)
Q Consensus       277 L~~n~i~~~~~~~~~~l~~--L~~l~L~~n~~~~~  309 (347)
                      |++|.+...+...+..++.  |+.|+|++|++..+
T Consensus       170 L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             CCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            8888887766666777765  37788888887654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=2.8e-17  Score=133.69  Aligned_cols=155  Identities=19%  Similarity=0.175  Sum_probs=111.2

Q ss_pred             cEEECCCCccccccCccCCCCCCccEEEccCCcccCCCc-cccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecC
Q 040206          141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLP-PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGN  219 (347)
Q Consensus       141 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  219 (347)
                      +.++++++.+. .+|..+  ...+++|++++|.++...+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            45666666665 344433  2345677777777664433 3467777788888888777766666777778888888888


Q ss_pred             CccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCE
Q 040206          220 NSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQV  298 (347)
Q Consensus       220 ~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  298 (347)
                      |.+++..+..+. .++|++|++++|.+.+.             .|..+..+++|++|+|++|.+++..+..+..+++|+.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  157 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCV-------------GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST  157 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCB-------------CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeE-------------CHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence            877766555443 37788888888888753             2446778888999999999988877888888889999


Q ss_pred             EEcccceeecccC
Q 040206          299 LILRSNRFWGPIG  311 (347)
Q Consensus       299 l~L~~n~~~~~~~  311 (347)
                      |++++|++.+..+
T Consensus       158 L~L~~N~l~c~c~  170 (220)
T 2v70_A          158 LNLLANPFNCNCY  170 (220)
T ss_dssp             EECCSCCEECSGG
T ss_pred             EEecCcCCcCCCc
Confidence            9999999887655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1e-17  Score=155.63  Aligned_cols=189  Identities=21%  Similarity=0.251  Sum_probs=117.9

Q ss_pred             CcEEEccCCCCCccCC-CCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCcc
Q 040206           72 LQYLTLDSNLLQGSLP-DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNF  150 (347)
Q Consensus        72 L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  150 (347)
                      +..+.+..+.+..... ..+++|+.|++++|.+... + .+..+++|+.|++++|.+....+ ...+++|+.|++++|.+
T Consensus        23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred             HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence            3334444444443221 2246777777777777633 2 46677778888887777765444 44566777777777776


Q ss_pred             ccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccc
Q 040206          151 QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL  230 (347)
Q Consensus       151 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  230 (347)
                      .. . ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+ ..
T Consensus       100 ~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~  172 (605)
T 1m9s_A          100 KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LA  172 (605)
T ss_dssp             CC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GT
T ss_pred             CC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hc
Confidence            53 2 2566677777777777776632  3566777777777777777643  456667777777777777665444 33


Q ss_pred             cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCc
Q 040206          231 ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT  285 (347)
Q Consensus       231 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~  285 (347)
                      ..++|+.|+|++|.+.+              + +.+..+++|+.|+|++|.+...
T Consensus       173 ~l~~L~~L~Ls~N~i~~--------------l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          173 GLTKLQNLYLSKNHISD--------------L-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TCTTCCEEECCSSCCCB--------------C-GGGTTCTTCSEEECCSEEEECC
T ss_pred             cCCCCCEEECcCCCCCC--------------C-hHHccCCCCCEEEccCCcCcCC
Confidence            34667777777776663              2 1355666677777777766543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.5e-17  Score=141.36  Aligned_cols=189  Identities=19%  Similarity=0.233  Sum_probs=142.7

Q ss_pred             CcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCC-CCCCCccEEEcccCcccccCCccccCCCCccEEEcccCc
Q 040206           49 HTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLP-DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS  126 (347)
Q Consensus        49 ~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  126 (347)
                      ..+..+.+....++++.. ..+++|+.|++++|.+..... ..+++|++|++++|.+....+  +..+++|+.|++++|.
T Consensus        24 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~  101 (291)
T 1h6t_A           24 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK  101 (291)
T ss_dssp             HHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence            334455566666666433 567899999999999875532 335899999999999986544  8899999999999999


Q ss_pred             ccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccc
Q 040206          127 LSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECL  206 (347)
Q Consensus       127 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l  206 (347)
                      +... +....+++|++|++++|.+...  ..+..+++|++|++++|.++..  ..+..+++|+.|++++|.+.+..+  +
T Consensus       102 l~~~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l  174 (291)
T 1h6t_A          102 VKDL-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L  174 (291)
T ss_dssp             CCCG-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CCCC-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence            8853 4455677899999999988643  4567778888888888888754  567888888888888888875443  7


Q ss_pred             cCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccc
Q 040206          207 GNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSG  247 (347)
Q Consensus       207 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  247 (347)
                      ..+++|+.|++++|.+++. +.....++|+.|++++|++..
T Consensus       175 ~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          175 AGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEEC
T ss_pred             cCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCcccC
Confidence            7788888888888887753 334444677777777777764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=6.3e-17  Score=131.62  Aligned_cols=150  Identities=18%  Similarity=0.225  Sum_probs=89.6

Q ss_pred             EEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccc
Q 040206           74 YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQG  152 (347)
Q Consensus        74 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~  152 (347)
                      .++++++.+...+...++++++|++++|.+..+.+..|..+++|+.|++++|.+....+..+ .+++|+.|++++|.+..
T Consensus        15 ~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~   94 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE   94 (220)
T ss_dssp             EEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred             EEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence            34444444444444444555555666665554555556666667777766666665544333 44566666666666654


Q ss_pred             ccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206          153 SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       153 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                      ..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus        95 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            44444556666666666666666555566666666777777776666555555666666666666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=7.8e-17  Score=131.06  Aligned_cols=150  Identities=19%  Similarity=0.231  Sum_probs=84.7

Q ss_pred             EEEccCCCCCccCCCCCCCccEEEcccCcccccCC-ccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccc
Q 040206           74 YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIP-SSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQ  151 (347)
Q Consensus        74 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  151 (347)
                      .++++++.++..+...++.+++|++++|.+....+ ..|..+++|+.|++++|.+....+..+ .+++|++|++++|.+.
T Consensus        15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~   94 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE   94 (220)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC
Confidence            44444444444433334444555555555554322 345666666666666666665444332 4445666666666655


Q ss_pred             cccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206          152 GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       152 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                      ...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus        95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            444445556666666666666666555555666666666666666666555556666666666666666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=1.5e-17  Score=154.50  Aligned_cols=188  Identities=21%  Similarity=0.260  Sum_probs=104.0

Q ss_pred             CCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCC-CCCCCccEEEccc
Q 040206           23 HQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLP-DLPPHMVQLLISN  100 (347)
Q Consensus        23 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~  100 (347)
                      .++..+.+..+.+.+..+  +..+  ++|+.|+++++.+..++. ..+++|+.|++++|.+....+ ..+++|+.|++++
T Consensus        21 ~~l~~l~l~~~~i~~~~~--~~~L--~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT--QNEL--NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC--HHHH--TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred             HHHHHHhccCCCcccccc--hhcC--CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcC
Confidence            334455666666653332  2233  778888888887777755 556777777777777665432 2235666666666


Q ss_pred             CcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCcc
Q 040206          101 NSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPP  180 (347)
Q Consensus       101 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  180 (347)
                      |.+...  ..+..+++|+.|++++|.+... +....+++|+.|++++|.+...  ..+..+++|+.|++++|.+....+ 
T Consensus        97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-  170 (605)
T 1m9s_A           97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-  170 (605)
T ss_dssp             SCCCCC--TTSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred             CCCCCC--hhhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence            665532  2455566666666666655532 3333445555555555555422  344455555555555555543322 


Q ss_pred             ccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206          181 SLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       181 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                       +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.
T Consensus       171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence             55555555555555555432  23455555555555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=1.8e-16  Score=129.72  Aligned_cols=153  Identities=20%  Similarity=0.204  Sum_probs=113.6

Q ss_pred             CcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcc
Q 040206           72 LQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNF  150 (347)
Q Consensus        72 L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  150 (347)
                      .+.++++++.+...+...+++|++|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+
T Consensus        21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            3455666666665555556677777777777776667778888888888888888876655544 556888888888887


Q ss_pred             ccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccC
Q 040206          151 QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP  225 (347)
Q Consensus       151 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  225 (347)
                      ....+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++.+|.+...
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            7555566777888888888888887 5667778888888888888888766666777888888888888877643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=3.7e-17  Score=130.73  Aligned_cols=150  Identities=17%  Similarity=0.206  Sum_probs=101.1

Q ss_pred             ccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEe
Q 040206          138 STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDV  217 (347)
Q Consensus       138 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  217 (347)
                      ++|+.|++++|.+. ..+ .+..+++|++|++++|.+..  +..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            45666666666554 333 45566677777777775542  235667777777777777777555667777777777877


Q ss_pred             cCCccccCcCccc-cccCCcEEEcccCc-ccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccC
Q 040206          218 GNNSLSGPIPECL-ANSTLEILDMRMNK-FSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQ  295 (347)
Q Consensus       218 ~~~~~~~~~~~~~-~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~  295 (347)
                      ++|.+++..+..+ ..++|++|++++|. +.              .++ .+..+++|++|++++|.+.+..  .+..+++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~--------------~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~  182 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT--------------DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPK  182 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC--------------CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSS
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcc--------------ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCC
Confidence            7777775444333 33678888888886 55              233 4677888999999999887643  5778889


Q ss_pred             CCEEEcccceeec
Q 040206          296 LQVLILRSNRFWG  308 (347)
Q Consensus       296 L~~l~L~~n~~~~  308 (347)
                      |+.|++++|++.+
T Consensus       183 L~~L~l~~N~i~~  195 (197)
T 4ezg_A          183 LNQLYAFSQTIGG  195 (197)
T ss_dssp             CCEEEECBC----
T ss_pred             CCEEEeeCcccCC
Confidence            9999999988754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=6.9e-17  Score=141.60  Aligned_cols=173  Identities=23%  Similarity=0.155  Sum_probs=101.5

Q ss_pred             ccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCC----CCCCccEEEcccCcccccCCccccCCCCccEEEcccCc
Q 040206           51 LQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPD----LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS  126 (347)
Q Consensus        51 L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  126 (347)
                      -+.++++++.++.++..-...++.|++++|.++.....    .+++|++|++++|.+..+.+..|..+++|++|++++|.
T Consensus        20 ~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            35677777777777665556677777777776654433    33566666666666665555566666666666666666


Q ss_pred             ccccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCcccc---ccCCCCcEEEccCCcccCCC
Q 040206          127 LSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL---INCVNLQFLDVGNNNLSGPI  202 (347)
Q Consensus       127 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~n~~~~~~  202 (347)
                      +....+..+ .+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+   ..+++|+.|++++|.+....
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            665544433 34566666666666655555566666666666666666654333333   34566666666666665444


Q ss_pred             CccccCCCC--CCeEEecCCccc
Q 040206          203 PECLGNSTR--LSFLDVGNNSLS  223 (347)
Q Consensus       203 ~~~l~~~~~--L~~L~l~~~~~~  223 (347)
                      +..+..++.  ++.|++.+|.+.
T Consensus       180 ~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          180 LTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             HHHHHHSCHHHHTTEECCSSCEE
T ss_pred             HHHhhhccHhhcceEEecCCCcc
Confidence            444555554  255666665554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.3e-17  Score=138.02  Aligned_cols=168  Identities=22%  Similarity=0.222  Sum_probs=92.8

Q ss_pred             CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEcc
Q 040206           91 PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLS  170 (347)
Q Consensus        91 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  170 (347)
                      .+++.++++++.+.+..  .+..+++|+.|++++|.+.... ....+++|+.|++++|.+....+  +..+++|++|+++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            44555666666665332  4556677777777777666432 33345566666666666653322  5566666666666


Q ss_pred             CCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCC
Q 040206          171 GNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLP  250 (347)
Q Consensus       171 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  250 (347)
                      +|.++.. +. +.. ++|+.|++++|.+.+.  ..+..+++|+.|++++|.+++. +.....++|+.|++++|.+.+   
T Consensus        94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~---  164 (263)
T 1xeu_A           94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITN---  164 (263)
T ss_dssp             SSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCB---
T ss_pred             CCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcc---
Confidence            6666532 21 222 5666666666666532  2455666666666666665543 222233555555555555553   


Q ss_pred             hhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206          251 QNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD  284 (347)
Q Consensus       251 ~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~  284 (347)
                                 + ..+..+++|+.|++++|.+..
T Consensus       165 -----------~-~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          165 -----------T-GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             -----------C-TTSTTCCCCCEEEEEEEEEEC
T ss_pred             -----------h-HHhccCCCCCEEeCCCCcccC
Confidence                       1 234455555555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=8.8e-17  Score=128.52  Aligned_cols=153  Identities=16%  Similarity=0.222  Sum_probs=90.4

Q ss_pred             CCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEE
Q 040206          113 NLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLD  192 (347)
Q Consensus       113 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  192 (347)
                      .+++|+.|++++|.+.... ....+++|++|++++|.+.  .+..+..+++|++|++++|.++...+..++.+++|+.|+
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            3444555555555544222 3334445555555555432  223455566677777777666654555666677777777


Q ss_pred             ccCCcccCCCCccccCCCCCCeEEecCCc-cccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCC
Q 040206          193 VGNNNLSGPIPECLGNSTRLSFLDVGNNS-LSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQY  271 (347)
Q Consensus       193 l~~n~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  271 (347)
                      +++|.+.+..+..+..+++|++|++++|. +.. .+.....++|+.|++++|.+.+              ++ .+..+++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L~~L~l~~n~i~~--------------~~-~l~~l~~  182 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHD--------------YR-GIEDFPK  182 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSCCEEECTTBCCCC--------------CT-TGGGCSS
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCCCEEECCCCCCcC--------------hH-HhccCCC
Confidence            77777765556666677777777777776 443 3334444677777777777763              33 4667788


Q ss_pred             CcEEEccCCccCC
Q 040206          272 LEVLDVGNNQIDD  284 (347)
Q Consensus       272 L~~L~L~~n~i~~  284 (347)
                      |++|++++|.+.+
T Consensus       183 L~~L~l~~N~i~~  195 (197)
T 4ezg_A          183 LNQLYAFSQTIGG  195 (197)
T ss_dssp             CCEEEECBC----
T ss_pred             CCEEEeeCcccCC
Confidence            8888888887753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=1.6e-16  Score=132.80  Aligned_cols=161  Identities=17%  Similarity=0.197  Sum_probs=86.0

Q ss_pred             EecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCc
Q 040206            6 QVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQG   84 (347)
Q Consensus         6 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~   84 (347)
                      +++++.+..++ .+..+++|+.|++++|.+. .++ .+..  +++|++|++++|.+++++. ..+++|++|++++|.+..
T Consensus        25 ~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~--l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~   99 (263)
T 1xeu_A           25 NLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQF--FTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN   99 (263)
T ss_dssp             HHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGG--CTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC
T ss_pred             HhcCCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhh--CCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC
Confidence            44455555444 3555666666666666555 333 2332  2566666666665555543 444555555555555543


Q ss_pred             cCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCc
Q 040206           85 SLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNL  164 (347)
Q Consensus        85 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  164 (347)
                      ....                       .. ++|+.|++++|.+... +....+++|+.|++++|.+.+. + .+..+++|
T Consensus       100 l~~~-----------------------~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L  152 (263)
T 1xeu_A          100 LNGI-----------------------PS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKL  152 (263)
T ss_dssp             CTTC-----------------------CC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTC
T ss_pred             cCcc-----------------------cc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC-h-HHccCCCC
Confidence            2211                       11 4555555555555432 2233444555555555555432 2 45556666


Q ss_pred             cEEEccCCcccCCCccccccCCCCcEEEccCCcccC
Q 040206          165 TSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG  200 (347)
Q Consensus       165 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  200 (347)
                      ++|++++|.++..  ..+..+++|+.|++++|.+..
T Consensus       153 ~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          153 EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            6666666666544  456666777777777776653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=3.7e-16  Score=135.21  Aligned_cols=262  Identities=13%  Similarity=0.118  Sum_probs=158.3

Q ss_pred             cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCC--CCCCCCCCCCcEEEccCCCCCccCCCC--------C
Q 040206           21 TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT--SIDHLPWKNLQYLTLDSNLLQGSLPDL--------P   90 (347)
Q Consensus        21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~L~~L~l~~~~~~~~~~~~--------~   90 (347)
                      .+++++.|.++++ +...-...+.. .+++|+.|++++|.+.  ......++.++.+.+..+.+.......        +
T Consensus        23 ~~~~l~~L~l~g~-i~~~~~~~l~~-~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~  100 (329)
T 3sb4_A           23 EANSITHLTLTGK-LNAEDFRHLRD-EFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGK  100 (329)
T ss_dssp             HHHHCSEEEEEEE-ECHHHHHHHHH-SCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEEC
T ss_pred             hhCceeEEEEecc-ccHHHHHHHHH-hhccCeEEecCcceeEEecCccccccccccccccccccCHHHhccccccccccc
Confidence            4567888888764 22121223333 2478888888888887  333344444555666666555555455        6


Q ss_pred             CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcc----ccccCccCCCCCCcc
Q 040206           91 PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNF----QGSIPQTNAKGCNLT  165 (347)
Q Consensus        91 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~~~~~L~  165 (347)
                      ++|+.+++.+ .++.+...+|.++++|+.+++.+|.+....+..| ++..+..+.......    .......+..+..|+
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~  179 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE  179 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence            7788888877 6766666778888888888888877765555544 333455554443211    111112222233333


Q ss_pred             --------------------------EEEccCCcccCCCcccc-ccCCCCcEEEccCCcccCCCCccccCCCCCCeEEec
Q 040206          166 --------------------------SLRLSGNHLEGPLPPSL-INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVG  218 (347)
Q Consensus       166 --------------------------~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  218 (347)
                                                .+.+.+.-.. .....+ ..+++|+.+++++|.+......+|..+.+|+.+++.
T Consensus       180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             eeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence                                      2222221100 000011 136788888888887776666778888888888887


Q ss_pred             CCccccCcCccccc-cCCc-EEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCC
Q 040206          219 NNSLSGPIPECLAN-STLE-ILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQL  296 (347)
Q Consensus       219 ~~~~~~~~~~~~~~-~~L~-~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L  296 (347)
                      ++ +.......+.. .+|+ .+++.+ .++..             -+.+|.+|++|+.+++++|.+..+....|.++++|
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I-------------~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L  323 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI-------------EFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS  323 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECT-TCCEE-------------CTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred             cc-cceehHHHhhCChhccEEEEEcc-cceEE-------------chhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence            76 55555555444 5687 888877 44421             12467888888888888888887777788888888


Q ss_pred             CEEEc
Q 040206          297 QVLIL  301 (347)
Q Consensus       297 ~~l~L  301 (347)
                      +.++.
T Consensus       324 ~~ly~  328 (329)
T 3sb4_A          324 KLIYK  328 (329)
T ss_dssp             CEEEC
T ss_pred             hhhcc
Confidence            88764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1.7e-15  Score=117.87  Aligned_cols=133  Identities=21%  Similarity=0.174  Sum_probs=93.4

Q ss_pred             CCccEEEccCCccc-CCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEE
Q 040206          162 CNLTSLRLSGNHLE-GPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILD  239 (347)
Q Consensus       162 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~  239 (347)
                      +++++|++++|.++ ...+..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+..+. .++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            56666677666665 34455556667777777777776643  5666777777777777777654554444 47777888


Q ss_pred             cccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccc---hhhhhccCCCEEEcccceeec
Q 040206          240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL---YWLDVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       240 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~l~L~~n~~~~  308 (347)
                      +++|.+++. +           .+..+..+++|++|++++|.+++.++   ..+..+++|+.|++++|+...
T Consensus       102 Ls~N~l~~~-~-----------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLKDI-S-----------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCCSS-G-----------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCCccCcc-h-----------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            887777742 0           01356778899999999999887665   468889999999999988765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=1.2e-18  Score=160.91  Aligned_cols=200  Identities=21%  Similarity=0.156  Sum_probs=130.5

Q ss_pred             hcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCc-------------CCCCCC---CCCCCCcEEE-ccCCCC
Q 040206           20 RTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNV-------------LTSIDH---LPWKNLQYLT-LDSNLL   82 (347)
Q Consensus        20 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------l~~~~~---~~~~~L~~L~-l~~~~~   82 (347)
                      ..+++|+.|++++|.+. .+|..+..+  ++|+.|+++++.             .....+   ..+++|+.|+ ++.+.+
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l--~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESC--KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHH--HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHH--HHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence            56788888888888886 778777765  888888876653             111111   2334455554 333222


Q ss_pred             CccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCC
Q 040206           83 QGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC  162 (347)
Q Consensus        83 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  162 (347)
                              .+|+.+.+.+|.+....+      ..|+.|++++|.++..+ .+..+++|+.|++++|.+. .+|..+..++
T Consensus       423 --------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  486 (567)
T 1dce_A          423 --------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALR  486 (567)
T ss_dssp             --------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred             --------chhhhhhhhcccccccCc------cCceEEEecCCCCCCCc-CccccccCcEeecCccccc-ccchhhhcCC
Confidence                    234444445554442211      24777777777777543 3445667888888888776 6677777888


Q ss_pred             CccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCC-CccccCCCCCCeEEecCCccccCcCcccc----ccCCcE
Q 040206          163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPI-PECLGNSTRLSFLDVGNNSLSGPIPECLA----NSTLEI  237 (347)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~~L~~  237 (347)
                      +|+.|++++|.++. +| .++.+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+++..+....    .++|+.
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            88888888888774 45 7778888888888888887655 77788888888888888887765443221    367777


Q ss_pred             EEc
Q 040206          238 LDM  240 (347)
Q Consensus       238 L~L  240 (347)
                      |++
T Consensus       565 L~l  567 (567)
T 1dce_A          565 ILT  567 (567)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=1.4e-16  Score=151.62  Aligned_cols=151  Identities=26%  Similarity=0.279  Sum_probs=110.9

Q ss_pred             EcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccC
Q 040206           97 LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG  176 (347)
Q Consensus        97 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  176 (347)
                      ++..|.+. ..+..+..++.|+.|++++|.+..+....+.+++|+.|++++|.+. .+|..+..+++|++|++++|.++ 
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-  283 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-  283 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence            34444444 5566788888999999999988866666677788999999999887 77888888999999999999988 


Q ss_pred             CCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccc--cCCcEEEcccCcccccCCh
Q 040206          177 PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN--STLEILDMRMNKFSGSLPQ  251 (347)
Q Consensus       177 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~  251 (347)
                      .+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|.+++..+..+..  .....+++++|.+++.+|.
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            66888899999999999999887 56777889999999999999988766655543  2223467888888865444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=3.4e-15  Score=113.64  Aligned_cols=128  Identities=22%  Similarity=0.195  Sum_probs=82.0

Q ss_pred             CCccEEEccCCccc-CCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEE
Q 040206          162 CNLTSLRLSGNHLE-GPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILD  239 (347)
Q Consensus       162 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~  239 (347)
                      ++++.|++++|.++ ...+..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+++..+..+. .++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45566666666555 34444555666666666666666543  4556666666666666666654444333 46677777


Q ss_pred             cccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccc---hhhhhccCCCEEEccc
Q 040206          240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL---YWLDVLLQLQVLILRS  303 (347)
Q Consensus       240 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~l~L~~  303 (347)
                      +++|.+++..            .+..+..+++|++|++++|.+++..+   ..+..+++|+.|++++
T Consensus        95 ls~N~i~~~~------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLS------------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHH------------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChH------------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            7777766310            11356778888899999988877655   5678888999888863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=8.3e-15  Score=116.43  Aligned_cols=128  Identities=21%  Similarity=0.273  Sum_probs=74.6

Q ss_pred             cEEECCCCccccccCccCCCCCCccEEEccCCcccCCCcc-ccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecC
Q 040206          141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPP-SLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGN  219 (347)
Q Consensus       141 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  219 (347)
                      +.++++++.+. .+|..+.  .++++|++++|.++...+. .++.+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56677777665 4444332  2677777777776644432 366677777777777777666566666666777777766


Q ss_pred             CccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206          220 NSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD  284 (347)
Q Consensus       220 ~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~  284 (347)
                      |.+++..+..+. .++|+.|++++|.+++.             .|..+..+++|++|++++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCV-------------MPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEE-------------CTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCee-------------CHHHhhcCCCCCEEEeCCCCccC
Confidence            666654443332 25555555555555542             22334455555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=1.5e-17  Score=153.57  Aligned_cols=203  Identities=18%  Similarity=0.117  Sum_probs=144.6

Q ss_pred             CCCcccEEEcCCCcCCCCCC--CCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEE-cc
Q 040206           47 GVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLN-LS  123 (347)
Q Consensus        47 ~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~-l~  123 (347)
                      .++.|+.|++++|.++.++.  ..+++|+.|+++++......+   ..     +..+......+..++.+++|+.|+ ++
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~---~l-----l~~~~~~~~~~~~l~~l~~L~~L~~l~  418 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII---LL-----MRALDPLLYEKETLQYFSTLKAVDPMR  418 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH---HH-----HHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHH---HH-----HHhcccccCCHHHHHHHHhcccCcchh
Confidence            34889999999999887776  667889999886553110000   00     011112223445555556666655 33


Q ss_pred             cC-------------cccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcE
Q 040206          124 NN-------------SLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQF  190 (347)
Q Consensus       124 ~~-------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  190 (347)
                      .+             .+....     ...|+.|++++|.+.. +|. +..+++|+.|++++|.++ .+|..++.+++|+.
T Consensus       419 ~n~~~~L~~l~l~~n~i~~l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  490 (567)
T 1dce_A          419 AAYLDDLRSKFLLENSVLKME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV  490 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred             hcccchhhhhhhhcccccccC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCE
Confidence            33             333211     1258999999999884 565 888999999999999998 77889999999999


Q ss_pred             EEccCCcccCCCCccccCCCCCCeEEecCCccccCc-Ccc-ccccCCcEEEcccCcccccCChhhhccccccCCCcCccC
Q 040206          191 LDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI-PEC-LANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVN  268 (347)
Q Consensus       191 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~  268 (347)
                      |++++|.+.+ +| .+..+++|+.|++++|.+++.. +.. ...++|+.|++++|.+++..+.          ....+..
T Consensus       491 L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~----------~~~l~~~  558 (567)
T 1dce_A          491 LQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI----------QERLAEM  558 (567)
T ss_dssp             EECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC----------TTHHHHH
T ss_pred             EECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH----------HHHHHHH
Confidence            9999999985 55 8899999999999999999774 444 4458999999999999964332          1223445


Q ss_pred             CCCCcEEEc
Q 040206          269 CQYLEVLDV  277 (347)
Q Consensus       269 ~~~L~~L~L  277 (347)
                      +++|+.|++
T Consensus       559 lp~L~~L~l  567 (567)
T 1dce_A          559 LPSVSSILT  567 (567)
T ss_dssp             CTTCSEEEC
T ss_pred             CcccCccCC
Confidence            889998875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.1e-14  Score=113.21  Aligned_cols=135  Identities=19%  Similarity=0.126  Sum_probs=82.4

Q ss_pred             ccccEEECCCCccc-cccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEE
Q 040206          138 STLETLDLGMNNFQ-GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLD  216 (347)
Q Consensus       138 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  216 (347)
                      ++|+.|++++|.+. ...|..+..+++|++|++++|.++..  ..+..+++|+.|++++|.+.+..|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            35566666666554 34455555666666666666666543  4566667777777777776654555566677777777


Q ss_pred             ecCCccccCc--CccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206          217 VGNNSLSGPI--PECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD  284 (347)
Q Consensus       217 l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~  284 (347)
                      +++|.+++..  ......++|+.|++++|.+++..+..          ...+..+++|++|++++|.+..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~----------~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR----------ESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH----------HHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH----------HHHHHhCccCcEecCCCCChhh
Confidence            7777666533  22333367777777777776321100          0146677788888888887654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.56  E-value=4.9e-13  Score=118.21  Aligned_cols=260  Identities=15%  Similarity=0.168  Sum_probs=145.0

Q ss_pred             cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCC--CCCcEEEccCCCCCc---cCCCCCCCccE
Q 040206           21 TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW--KNLQYLTLDSNLLQG---SLPDLPPHMVQ   95 (347)
Q Consensus        21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~L~~L~l~~~~~~~---~~~~~~~~L~~   95 (347)
                      .+..++.+.+.+ .++ .++...+. + .+|+.+.+..+ ++.++...|  .+|+.+.+.. .+..   .....+++|+.
T Consensus       111 ~~~~l~~i~ip~-~i~-~I~~~aF~-~-~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVK-SIPKDAFR-N-SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             ECSSCSEEECCT-TCC-EECTTTTT-T-CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             ecCCccEEEECC-ccC-EehHhhcc-c-CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCe
Confidence            345555555533 333 33333333 2 34666665544 444444222  2455565554 2222   22233356666


Q ss_pred             EEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCCcc
Q 040206           96 LLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHL  174 (347)
Q Consensus        96 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  174 (347)
                      +++.+|.+..+...+|. ..+|+.+.+..+ +..+....| ++.+|+.+++..+ +.......|.. ++|+.+.+.. .+
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i  259 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV  259 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence            66666666644444554 466777776643 443444434 4456777776654 33344444544 5677777733 34


Q ss_pred             cCCCccccccCCCCcEEEccCCccc-----CCCCccccCCCCCCeEEecCCccccCcCccccc-cCCcEEEcccCccccc
Q 040206          175 EGPLPPSLINCVNLQFLDVGNNNLS-----GPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGS  248 (347)
Q Consensus       175 ~~~~~~~l~~~~~L~~L~l~~n~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~  248 (347)
                      +.....+|..+++|+.+++.++.+.     .....+|..|++|+.+.+.+ .+.......+.. .+|+.+.+..+ ++..
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I  337 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI  337 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence            4345566777777777777665443     24455677777777777763 354444444444 67777777544 3311


Q ss_pred             CChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhcc-CCCEEEcccceee
Q 040206          249 LPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLL-QLQVLILRSNRFW  307 (347)
Q Consensus       249 ~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~l~L~~n~~~  307 (347)
                                   -..+|.+| +|+.+++.+|.........|..++ .+..|.+-.+.+.
T Consensus       338 -------------~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          338 -------------NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             -------------CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             -------------cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence                         12367778 888888888877766666666664 6778887766543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=3.3e-15  Score=142.10  Aligned_cols=155  Identities=22%  Similarity=0.181  Sum_probs=106.8

Q ss_pred             CCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccC
Q 040206          146 GMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP  225 (347)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  225 (347)
                      ..+.+. ..+..+..++.|+.|++++|.+. .++..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++..
T Consensus       209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l  285 (727)
T 4b8c_D          209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL  285 (727)
T ss_dssp             --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred             ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc
Confidence            334433 45667778888888999888887 55666678888999999998888 6778888888999999999988844


Q ss_pred             cCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccC-CCEEEcccc
Q 040206          226 IPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQ-LQVLILRSN  304 (347)
Q Consensus       226 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~l~L~~n  304 (347)
                      .......++|++|+|++|.++              .+|..++.+++|+.|+|++|.+++.++..+..+.. +..++|++|
T Consensus       286 p~~~~~l~~L~~L~L~~N~l~--------------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N  351 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMVT--------------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN  351 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCCC--------------CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ChhhcCCCCCCEEECCCCCCC--------------ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC
Confidence            334444588999999998887              46667888899999999999998877776654322 224677777


Q ss_pred             eeecccCCccccc
Q 040206          305 RFWGPIGKLRSRW  317 (347)
Q Consensus       305 ~~~~~~~~~~~~~  317 (347)
                      .+++.+|..+..+
T Consensus       352 ~l~~~~p~~l~~l  364 (727)
T 4b8c_D          352 RPEIPLPHERRFI  364 (727)
T ss_dssp             CCCCCCCCC----
T ss_pred             cccCcCcccccee
Confidence            7777777654433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=6.4e-14  Score=111.27  Aligned_cols=130  Identities=22%  Similarity=0.281  Sum_probs=72.0

Q ss_pred             cEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCC
Q 040206          141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNN  220 (347)
Q Consensus       141 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~  220 (347)
                      +.++++++.+. .+|..+  .+++++|++++|.++ .++..+..+++|+.|++++|.+.+..+..+..+++         
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~---------   79 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ---------   79 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT---------
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC---------
Confidence            34555555554 333322  134555555555554 33344555555555555555555444444444444         


Q ss_pred             ccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEE
Q 040206          221 SLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLI  300 (347)
Q Consensus       221 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~  300 (347)
                                    |+.|+|++|.+++.             .+..|..+++|++|+|++|.++...+..+..+++|+.|+
T Consensus        80 --------------L~~L~Ls~N~l~~i-------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           80 --------------LLTLILSYNRLRCI-------------PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             --------------CCEEECCSSCCCBC-------------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             --------------CCEEECCCCccCEe-------------CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence                          44555555555432             122456667777777777777766666667777777777


Q ss_pred             cccceeeccc
Q 040206          301 LRSNRFWGPI  310 (347)
Q Consensus       301 L~~n~~~~~~  310 (347)
                      +++|++....
T Consensus       133 L~~N~~~C~c  142 (193)
T 2wfh_A          133 IGANPLYCDC  142 (193)
T ss_dssp             CCSSCEECSG
T ss_pred             eCCCCeecCC
Confidence            7777776543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=5e-14  Score=110.45  Aligned_cols=113  Identities=19%  Similarity=0.161  Sum_probs=71.8

Q ss_pred             CCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccc-cccCCcEEEcccCcccccCChhhhccccccCCCc
Q 040206          186 VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL-ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPP  264 (347)
Q Consensus       186 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~  264 (347)
                      ++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+ ..++|+.|++++|.+++.             .+.
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-------------~~~   94 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-------------PNG   94 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTT
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-------------CHH
Confidence            455666666665554444445555666666666666554443332 235666666666666632             122


Q ss_pred             CccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206          265 SLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG  311 (347)
Q Consensus       265 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~  311 (347)
                      .+..+++|++|++++|.+++.++..+..+++|+.|++++|++.+..+
T Consensus        95 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           95 VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            45677788888888888877666666778888888888888877655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=3.4e-14  Score=122.82  Aligned_cols=255  Identities=13%  Similarity=0.052  Sum_probs=150.4

Q ss_pred             ceEEEecCCCCCCCChhhhc-CCCccEEeccCCccc--ccCChhhhhcCCCcccEEEcCCCcCCCCCCCC--------CC
Q 040206            2 TIKTQVKTCNISEFPDILRT-QHQLEWLDLSKNQIR--GRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP--------WK   70 (347)
Q Consensus         2 l~~l~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--------~~   70 (347)
                      +++|.++|+--..--..+.. +++|+.|++++|++.  ......+     +.++.+.+..+.+..-....        ++
T Consensus        27 l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~-----~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~  101 (329)
T 3sb4_A           27 ITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY-----PNGKFYIYMANFVPAYAFSNVVNGVTKGKQ  101 (329)
T ss_dssp             CSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS-----GGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred             eeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccc-----cccccccccccccCHHHhcccccccccccC
Confidence            56777776421111123444 788999999999887  1111111     22334444444333333333        56


Q ss_pred             CCcEEEccCCCCCccCC---CCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcc----cccCCc-ccCCcc---
Q 040206           71 NLQYLTLDSNLLQGSLP---DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL----SGQIPQ-CLGNST---  139 (347)
Q Consensus        71 ~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~-~~~~~~---  139 (347)
                      +|+.+++.+ .+.....   ..+++|+.+++.+|.+..+.+.+|.++.++..+.......    ...... +..+..   
T Consensus       102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~  180 (329)
T 3sb4_A          102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET  180 (329)
T ss_dssp             TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred             CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence            666666665 4443322   2235666666666666555556666666565555443211    000111 112222   


Q ss_pred             -----------------------ccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCC
Q 040206          140 -----------------------LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNN  196 (347)
Q Consensus       140 -----------------------L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n  196 (347)
                                             ++.+.+.+.-...........+++|+++++++|.++.....+|..+++|+.+++.+|
T Consensus       181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n  260 (329)
T 3sb4_A          181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN  260 (329)
T ss_dssp             EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred             eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence                                   233333222110000000112678999999998888777788999999999999987


Q ss_pred             cccCCCCccccCCCCCC-eEEecCCccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcE
Q 040206          197 NLSGPIPECLGNSTRLS-FLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEV  274 (347)
Q Consensus       197 ~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~  274 (347)
                       +......+|..+.+|+ .+.+.+ .++......+.. ++|+.++++++.+....             +.+|.+|++|+.
T Consensus       261 -i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~-------------~~aF~~~~~L~~  325 (329)
T 3sb4_A          261 -LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG-------------DELFGNGVPSKL  325 (329)
T ss_dssp             -CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC-------------TTTTCTTCCCCE
T ss_pred             -cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc-------------hhhhcCCcchhh
Confidence             6656778899999999 999987 666555555554 78999999988888431             237889999999


Q ss_pred             EEc
Q 040206          275 LDV  277 (347)
Q Consensus       275 L~L  277 (347)
                      ++.
T Consensus       326 ly~  328 (329)
T 3sb4_A          326 IYK  328 (329)
T ss_dssp             EEC
T ss_pred             hcc
Confidence            874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=3e-14  Score=113.18  Aligned_cols=86  Identities=20%  Similarity=0.328  Sum_probs=46.8

Q ss_pred             ccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEe
Q 040206          138 STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDV  217 (347)
Q Consensus       138 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  217 (347)
                      ++|++|++++|.+....|..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            34444444444444344444555555555555555555444444555566666666666665555555556666666666


Q ss_pred             cCCccc
Q 040206          218 GNNSLS  223 (347)
Q Consensus       218 ~~~~~~  223 (347)
                      ++|.+.
T Consensus       134 ~~N~l~  139 (192)
T 1w8a_A          134 ASNPFN  139 (192)
T ss_dssp             TTCCBC
T ss_pred             CCCCcc
Confidence            666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=3.7e-14  Score=107.83  Aligned_cols=130  Identities=17%  Similarity=0.117  Sum_probs=88.2

Q ss_pred             ccccEEECCCCccc-cccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEE
Q 040206          138 STLETLDLGMNNFQ-GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLD  216 (347)
Q Consensus       138 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  216 (347)
                      ++++.|++++|.+. +..|..+..+++|++|++++|.++..  ..++.+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45677777777665 45566667777777777777777644  5677777888888888877765666666777888888


Q ss_pred             ecCCccccCc--CccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccC
Q 040206          217 VGNNSLSGPI--PECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGN  279 (347)
Q Consensus       217 l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~  279 (347)
                      +++|.+++..  ......++|+.|++++|.+++..+..          ...+..+++|++|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----------~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR----------ENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHH----------HHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHH----------HHHHHHCCCcccccCCC
Confidence            8888777532  33334477888888888877432200          01467788888888753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=3.4e-14  Score=111.23  Aligned_cols=132  Identities=19%  Similarity=0.137  Sum_probs=93.1

Q ss_pred             CCCCCccEEEccCCcccCCCccccccC-CCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcc-ccccCCc
Q 040206          159 AKGCNLTSLRLSGNHLEGPLPPSLINC-VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPEC-LANSTLE  236 (347)
Q Consensus       159 ~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~  236 (347)
                      ..+++|++|++++|.++.. +. +..+ ++|+.|++++|.+.+.  ..+..+++|+.|++++|.+++..+.. ...++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            3456677777777776633 33 3333 4788888888777643  56677778888888888777554444 3347888


Q ss_pred             EEEcccCcccccCChhhhccccccCCCc--CccCCCCCcEEEccCCccCCccch---hhhhccCCCEEEcccceeec
Q 040206          237 ILDMRMNKFSGSLPQNICKKLCFGPLPP--SLVNCQYLEVLDVGNNQIDDTFLY---WLDVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       237 ~L~L~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~n~i~~~~~~---~~~~l~~L~~l~L~~n~~~~  308 (347)
                      .|++++|.+..              +|.  .+..+++|++|++++|.+...+..   .+..+++|+.||+++|....
T Consensus        92 ~L~L~~N~i~~--------------~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           92 ELILTNNSLVE--------------LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSCCCCC--------------GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEECCCCcCCc--------------chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            88888888762              333  567888999999999998754433   47889999999999988764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=2.4e-13  Score=107.92  Aligned_cols=123  Identities=24%  Similarity=0.290  Sum_probs=57.5

Q ss_pred             EEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccc
Q 040206           74 YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQG  152 (347)
Q Consensus        74 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~  152 (347)
                      +++++++.+...+...++++++|++++|.+. .++..+..+++|+.|++++|.+....+..+ .+++|++|++++|.+..
T Consensus        14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~   92 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC   92 (193)
T ss_dssp             EEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             EEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence            4444444444444334445555555555554 344556666666666666666654443322 33344444444444443


Q ss_pred             ccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCc
Q 040206          153 SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN  197 (347)
Q Consensus       153 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  197 (347)
                      ..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.
T Consensus        93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            333334444444444444444443322233344444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=5.8e-13  Score=104.33  Aligned_cols=127  Identities=20%  Similarity=0.171  Sum_probs=59.2

Q ss_pred             EEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccc
Q 040206           74 YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGS  153 (347)
Q Consensus        74 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  153 (347)
                      .++++++++...+...++++++|++++|.+....+..+..+++|++|++++|.+....+.                    
T Consensus        11 ~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------------   70 (177)
T 2o6r_A           11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG--------------------   70 (177)
T ss_dssp             EEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT--------------------
T ss_pred             EEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh--------------------
Confidence            344444444433333334444444444444433334455555566666555555433332                    


Q ss_pred             cCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206          154 IPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       154 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                         .+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus        71 ---~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           71 ---VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             ---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ---HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence               2334444444444444444333333444555555555555554333333444555555555555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.47  E-value=7.1e-12  Score=110.80  Aligned_cols=248  Identities=10%  Similarity=0.089  Sum_probs=182.3

Q ss_pred             CCCcccEEEcCCCcCCCCCCCCC--CCCcEEEccCCCCCccCCCCC--CCccEEEcccCcccccCCccccCCCCccEEEc
Q 040206           47 GVHTLQFLILSQNVLTSIDHLPW--KNLQYLTLDSNLLQGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNL  122 (347)
Q Consensus        47 ~~~~L~~L~l~~~~l~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  122 (347)
                      .+..++.+.+.++ ++.++...|  .+|+.+.+..+ +.......+  .+|+.+.+.. .+..+...+|.++++|+.+++
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             ecCCccEEEECCc-cCEehHhhcccCCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            3467788887653 444544222  36899988765 443333222  4699999986 666677788999999999999


Q ss_pred             ccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCC
Q 040206          123 SNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPI  202 (347)
Q Consensus       123 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  202 (347)
                      .++.+.......+...+|+.+.+..+ +.......|..+++|+.+.+..+ ++.....+|.. .+|+.+.+.. .+....
T Consensus       188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~  263 (401)
T 4fdw_A          188 SKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIA  263 (401)
T ss_dssp             TTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEEC
T ss_pred             CCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEC
Confidence            99999888888888889999999865 55567788999999999999874 45455667777 7899999954 455456


Q ss_pred             CccccCCCCCCeEEecCCccc-----cCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEE
Q 040206          203 PECLGNSTRLSFLDVGNNSLS-----GPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLD  276 (347)
Q Consensus       203 ~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~  276 (347)
                      ..+|..|++|+.+.+.++.+.     ......+. .++|+.+.+..+ +...             -..+|.+|.+|+.+.
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I-------------~~~aF~~c~~L~~l~  329 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRIL-------------GQGLLGGNRKVTQLT  329 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEE-------------CTTTTTTCCSCCEEE
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEE-------------hhhhhcCCCCccEEE
Confidence            778999999999999887664     23333333 378999999843 4421             124688999999999


Q ss_pred             ccCCccCCccchhhhhccCCCEEEcccceeecccCCccccc
Q 040206          277 VGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRW  317 (347)
Q Consensus       277 L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~  317 (347)
                      +..+ +..+....|..+ +|+.+++++|....-....+...
T Consensus       330 lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          330 IPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             ECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             ECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            9665 666677788999 99999999997765444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=9e-13  Score=103.09  Aligned_cols=109  Identities=16%  Similarity=0.109  Sum_probs=48.2

Q ss_pred             ccCCCCccEEEcccCcccccCCcccCCc-cccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCc
Q 040206          111 FCNLSSIQYLNLSNNSLSGQIPQCLGNS-TLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQ  189 (347)
Q Consensus       111 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  189 (347)
                      +..+.+|+.|++++|.+... +...... +|+.|++++|.+...  ..+..+++|++|++++|.++...+..+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            33455555666655555532 2222222 555555555554422  3344444455555555544432222234444455


Q ss_pred             EEEccCCcccCCCCc--cccCCCCCCeEEecCCccc
Q 040206          190 FLDVGNNNLSGPIPE--CLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       190 ~L~l~~n~~~~~~~~--~l~~~~~L~~L~l~~~~~~  223 (347)
                      .|++++|.+.+ .+.  .+..+++|+.|++++|.+.
T Consensus        92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC
Confidence            55554444432 222  3334444444444444433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.37  E-value=3.2e-11  Score=106.80  Aligned_cols=265  Identities=11%  Similarity=0.117  Sum_probs=132.2

Q ss_pred             CCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCC---------
Q 040206           14 EFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSN---------   80 (347)
Q Consensus        14 ~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~---------   80 (347)
                      .+. .+|.++.+|+.+.+.. .++ .+....+. +|.+|+.+++..+ ++.++.   ..+.+|+.+.+..+         
T Consensus        61 sIg~~AF~~c~~L~~i~lp~-~i~-~I~~~aF~-~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF  136 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPS-TVR-EIGEFAFE-NCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF  136 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCT-TCC-EECTTTTT-TCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCC-Ccc-CcchhHhh-CCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence            444 3677777777777753 344 44444444 5677777777543 333333   22333333332211         


Q ss_pred             ---CC------------CccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEE
Q 040206           81 ---LL------------QGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLD  144 (347)
Q Consensus        81 ---~~------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~  144 (347)
                         ..            .......+++|+.+.+..+.. .+...+|.++.+|+.+.+..+ +.......+ .+..|+.+.
T Consensus       137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME  214 (394)
T ss_dssp             TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred             ecccccccccCccccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence               00            111222346778887765433 255566777777877777654 222222222 334455544


Q ss_pred             CCCCcc---------------------ccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCC
Q 040206          145 LGMNNF---------------------QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIP  203 (347)
Q Consensus       145 l~~~~~---------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  203 (347)
                      +..+..                     .......+..+..++.+.+..+... .....+..+..++.+......+.   .
T Consensus       215 ~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~  290 (394)
T 4fs7_A          215 FPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---E  290 (394)
T ss_dssp             CCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---T
T ss_pred             cCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---c
Confidence            443321                     1122223334444444444333221 22333444444444444433222   2


Q ss_pred             ccccCCCCCCeEEecCCccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCcc
Q 040206          204 ECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI  282 (347)
Q Consensus       204 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i  282 (347)
                      ..+..+.+|+.+.+..+ ++......+.. .+|+.+++..+ ++. +            -..+|.+|.+|+.+.+..+ +
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~-I------------~~~aF~~c~~L~~i~lp~~-l  354 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE-I------------GKRSFRGCTSLSNINFPLS-L  354 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCE-E------------CTTTTTTCTTCCEECCCTT-C
T ss_pred             ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccE-E------------hHHhccCCCCCCEEEECcc-c
Confidence            34555666666666543 33333333332 56666666432 221 0            1235777777887777665 5


Q ss_pred             CCccchhhhhccCCCEEEcccc
Q 040206          283 DDTFLYWLDVLLQLQVLILRSN  304 (347)
Q Consensus       283 ~~~~~~~~~~l~~L~~l~L~~n  304 (347)
                      ..+....|.+|++|+.+++..+
T Consensus       355 ~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          355 RKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CEECTTTBTTCTTCCEEEEEGG
T ss_pred             cEehHHHhhCCCCCCEEEECCC
Confidence            5555666777777887777543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=5.3e-15  Score=118.22  Aligned_cols=134  Identities=22%  Similarity=0.141  Sum_probs=69.6

Q ss_pred             cCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCc
Q 040206          157 TNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLE  236 (347)
Q Consensus       157 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~  236 (347)
                      .+..+++|++|++++|.++. .+ .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++. +.....++|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~~~~~l~~L~  118 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-HHHHHHHHSS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-CccccCCCCC
Confidence            44455566666666665553 33 5555566666666666655 3344444555666666666655532 2222235566


Q ss_pred             EEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccch----------hhhhccCCCEEEccccee
Q 040206          237 ILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLY----------WLDVLLQLQVLILRSNRF  306 (347)
Q Consensus       237 ~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~----------~~~~l~~L~~l~L~~n~~  306 (347)
                      .|++++|.+.+..+            ...+..+++|++|++++|.+.+..+.          .+..+++|+.||  ++++
T Consensus       119 ~L~l~~N~i~~~~~------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          119 VLYMSNNKITNWGE------------IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             EEEESEEECCCHHH------------HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             EEECCCCcCCchhH------------HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            66666665552100            01244555666666666665443222          245556666555  4555


Q ss_pred             ec
Q 040206          307 WG  308 (347)
Q Consensus       307 ~~  308 (347)
                      +.
T Consensus       185 ~~  186 (198)
T 1ds9_A          185 DV  186 (198)
T ss_dssp             TT
T ss_pred             CH
Confidence            43

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=1.4e-14  Score=115.72  Aligned_cols=119  Identities=24%  Similarity=0.249  Sum_probs=98.7

Q ss_pred             CCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhcc
Q 040206          177 PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKK  256 (347)
Q Consensus       177 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~  256 (347)
                      .++..+..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.++.........++|+.|++++|.+++         
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~---------  107 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS---------  107 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC---------
T ss_pred             hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc---------
Confidence            344588999999999999999985 55 8889999999999999998543323333899999999999984         


Q ss_pred             ccccCCCcCccCCCCCcEEEccCCccCCccc-hhhhhccCCCEEEcccceeecccCC
Q 040206          257 LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL-YWLDVLLQLQVLILRSNRFWGPIGK  312 (347)
Q Consensus       257 ~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~L~~n~~~~~~~~  312 (347)
                           +| .+..+++|++|++++|.+.+... ..+..+++|+.|++++|++.+.+|.
T Consensus       108 -----l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          108 -----LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             -----HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             -----CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence                 23 46778999999999999987544 5688999999999999999887665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=4.2e-14  Score=123.87  Aligned_cols=109  Identities=21%  Similarity=0.209  Sum_probs=46.4

Q ss_pred             CCccEEEcccCcccccCCccc------CCccccEEECCCCccccccCccC-CCCCCccEEEccCCcccCCCcccc-----
Q 040206          115 SSIQYLNLSNNSLSGQIPQCL------GNSTLETLDLGMNNFQGSIPQTN-AKGCNLTSLRLSGNHLEGPLPPSL-----  182 (347)
Q Consensus       115 ~~L~~L~l~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l-----  182 (347)
                      +.|+.|++++|.++......+      ...+|+.|++++|.+.......+ ..+++|++|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            456666666666543221111      11355555665555432211111 112345555555555442222222     


Q ss_pred             ccCCCCcEEEccCCcccC----CCCccccCCCCCCeEEecCCccc
Q 040206          183 INCVNLQFLDVGNNNLSG----PIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       183 ~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                      ...++|++|++++|.+.+    .++..+..+++|++|++++|.+.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            123445555555554432    12222344445555555555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.26  E-value=5.5e-11  Score=92.22  Aligned_cols=104  Identities=21%  Similarity=0.147  Sum_probs=53.6

Q ss_pred             cEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCc
Q 040206          118 QYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN  197 (347)
Q Consensus       118 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  197 (347)
                      +.++++++.+...+...  ..+++.|++++|.+....+..+..+++|++|++++|+++...+..+..+++|+.|++++|.
T Consensus        12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            34455555444332221  1345555555555554444555555555555555555554444444555555555555555


Q ss_pred             ccCCCCccccCCCCCCeEEecCCccc
Q 040206          198 LSGPIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       198 ~~~~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                      +.+..+..+..+++|+.|++++|.+.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            55444444555555555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.26  E-value=5.3e-11  Score=92.31  Aligned_cols=102  Identities=21%  Similarity=0.211  Sum_probs=54.4

Q ss_pred             cEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccc
Q 040206           73 QYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQ  151 (347)
Q Consensus        73 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  151 (347)
                      +.++++++.+...+...++++++|++++|.+....+..|..+++|++|++++|.+....+..+ .+++|++|++++|.+.
T Consensus        12 ~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~   91 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK   91 (170)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC
Confidence            445555555554444444555556666666655555566666666666666666665444433 3445555555555554


Q ss_pred             cccCccCCCCCCccEEEccCCcc
Q 040206          152 GSIPQTNAKGCNLTSLRLSGNHL  174 (347)
Q Consensus       152 ~~~~~~~~~~~~L~~L~l~~~~~  174 (347)
                      ...+..+..+++|++|++++|.+
T Consensus        92 ~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           92 SIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EeCHHHhcCCCCCCEEEeCCCCC
Confidence            33333344445555555555444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=1.7e-13  Score=120.08  Aligned_cols=137  Identities=23%  Similarity=0.288  Sum_probs=85.3

Q ss_pred             CCccEEEcccCcccccCCccc--CCccccEEECCCCccccccCccC-----CCCCCccEEEccCCcccCC----Cccccc
Q 040206          115 SSIQYLNLSNNSLSGQIPQCL--GNSTLETLDLGMNNFQGSIPQTN-----AKGCNLTSLRLSGNHLEGP----LPPSLI  183 (347)
Q Consensus       115 ~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~l~  183 (347)
                      ++|++|++++|.+.......+  .+.+|+.|++++|.+.......+     ...+.|++|++++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            567777777776643221111  23467777777777643322222     3456788888888887642    333446


Q ss_pred             cCCCCcEEEccCCcccCC----CCccccCCCCCCeEEecCCccccCcCcccc-----ccCCcEEEcccCcccccCCh
Q 040206          184 NCVNLQFLDVGNNNLSGP----IPECLGNSTRLSFLDVGNNSLSGPIPECLA-----NSTLEILDMRMNKFSGSLPQ  251 (347)
Q Consensus       184 ~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~L~~L~L~~~~~~~~~~~  251 (347)
                      .+++|++|++++|.+.+.    ++..+..+++|+.|++++|.+++.....+.     .++|++|+|++|.+++.+..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~  257 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQ  257 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHH
Confidence            788899999999988642    244566677888888888887654333222     25667777777766654444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.22  E-value=1.1e-10  Score=90.86  Aligned_cols=103  Identities=21%  Similarity=0.243  Sum_probs=57.4

Q ss_pred             cEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccc
Q 040206           73 QYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQ  151 (347)
Q Consensus        73 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  151 (347)
                      +.++++++.+...+...+++|++|++++|.+....+..|..+++|++|++++|.+...++..+ .+++|+.|++++|.+.
T Consensus        15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence            455555555555444445566666666666665556666677777777777776665444433 3445555555555554


Q ss_pred             cccCccCCCCCCccEEEccCCccc
Q 040206          152 GSIPQTNAKGCNLTSLRLSGNHLE  175 (347)
Q Consensus       152 ~~~~~~~~~~~~L~~L~l~~~~~~  175 (347)
                      ...+..+..+++|++|++++|.+.
T Consensus        95 ~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           95 SIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             eeCHHHhccccCCCEEEeCCCCcc
Confidence            333333444555555555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.21  E-value=1.3e-10  Score=90.52  Aligned_cols=104  Identities=20%  Similarity=0.163  Sum_probs=51.4

Q ss_pred             cEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCc
Q 040206          118 QYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN  197 (347)
Q Consensus       118 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  197 (347)
                      +.++++++.+...+...  .++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            34444444444322221  1345555555555544444455555555555555555553333334555555555555555


Q ss_pred             ccCCCCccccCCCCCCeEEecCCccc
Q 040206          198 LSGPIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       198 ~~~~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                      +.+..+..+..+++|+.|++++|.+.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcc
Confidence            55433334555555555555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.16  E-value=2.9e-09  Score=94.17  Aligned_cols=245  Identities=12%  Similarity=0.111  Sum_probs=136.7

Q ss_pred             ccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCCCCCc---cCCCCCCCccEEEcccC-------
Q 040206           35 IRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNLLQG---SLPDLPPHMVQLLISNN-------  101 (347)
Q Consensus        35 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~~~~---~~~~~~~~L~~L~l~~~-------  101 (347)
                      ++ .+....+. +|.+|+++.+..+ ++.++.   ..+.+|+.+++.++ +..   .....++.|+.+.+..+       
T Consensus        59 Vt-sIg~~AF~-~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~  134 (394)
T 4fs7_A           59 VV-SIGYAAFQ-GCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVE  134 (394)
T ss_dssp             EE-EECTTTTT-TCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTT
T ss_pred             Ee-EhHHHHhh-CCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecce
Confidence            44 45555555 7799999999754 666665   55688999999754 221   12222233333332211       


Q ss_pred             --------------cccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccCccCCCCCCccE
Q 040206          102 --------------SLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTS  166 (347)
Q Consensus       102 --------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  166 (347)
                                    .+..+...+|.++.+|+.+.+.++... .....+ ++.+|+.+.+..+ +.......+..+..|+.
T Consensus       135 aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~  212 (394)
T 4fs7_A          135 AFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN  212 (394)
T ss_dssp             TTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred             eeecccccccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence                          111233457888999999999876433 444444 5678999888765 33344556666666666


Q ss_pred             EEccCCccc---------------------CCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccC
Q 040206          167 LRLSGNHLE---------------------GPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP  225 (347)
Q Consensus       167 L~l~~~~~~---------------------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  225 (347)
                      +.+..+...                     .....++..+..++.+.+..+... .....+..+..++.+......+.. 
T Consensus       213 i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~-  290 (394)
T 4fs7_A          213 MEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE-  290 (394)
T ss_dssp             CCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT-
T ss_pred             eecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc-
Confidence            655443221                     011122333344444444333221 222334444444444433322111 


Q ss_pred             cCccccccCCcEEEcccCcccccCChhhhccccccCC-CcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccc
Q 040206          226 IPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPL-PPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSN  304 (347)
Q Consensus       226 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n  304 (347)
                       .......+|+.+.+..+ +.              .+ ..+|.+|.+|+.+++..+ ++.+....|.+|.+|+.+++..+
T Consensus       291 -~~F~~~~~L~~i~l~~~-i~--------------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          291 -KTFYGCSSLTEVKLLDS-VK--------------FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             -TTTTTCTTCCEEEECTT-CC--------------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             -ccccccccccccccccc-cc--------------eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence             11122246666666443 22              12 246889999999999754 66666778899999999999765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.15  E-value=5.9e-09  Score=92.22  Aligned_cols=271  Identities=11%  Similarity=0.147  Sum_probs=156.5

Q ss_pred             CCCh-hhhcCC-CccEEeccCCcccccCChhhhhcCCCcccEEEcCCC---cCCCCCC---CCCCCCcEEEccCCC--CC
Q 040206           14 EFPD-ILRTQH-QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN---VLTSIDH---LPWKNLQYLTLDSNL--LQ   83 (347)
Q Consensus        14 ~~~~-~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~l~~~~~---~~~~~L~~L~l~~~~--~~   83 (347)
                      .+++ +|.+++ .|+.+.+.. .++ .+....+. +|.+|+.+.+..+   .++.++.   ..+.+|+.+.+..+-  +.
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~-svt-~Ig~~AF~-~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~  129 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPD-TVT-EIGSNAFY-NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEID  129 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECT-TCC-EECTTTTT-TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEEC
T ss_pred             EcCHhhccCCCCcCEEEEECC-Cee-EEhHHHhh-CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceeh
Confidence            4443 677764 578887754 344 44444444 6678888877654   2555544   334556665554321  11


Q ss_pred             ccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCC
Q 040206           84 GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCN  163 (347)
Q Consensus        84 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  163 (347)
                      ......+.+|+.+.+..+. ..+....|..+..|+.+.+.++ +.......+....|+.+.+..+... .....+..+..
T Consensus       130 ~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~-i~~~af~~c~~  206 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR-IGTNAFSECFA  206 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE-ECTTTTTTCTT
T ss_pred             hhhhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccccceeEEEECCcccc-cccchhhhccc
Confidence            2222334667777775432 2244556667777777777654 3334444444455666665443221 22333333333


Q ss_pred             ccEEEccCC------------------------------------cccCCCccccccCCCCcEEEccCCcccCCCCcccc
Q 040206          164 LTSLRLSGN------------------------------------HLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLG  207 (347)
Q Consensus       164 L~~L~l~~~------------------------------------~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~  207 (347)
                      +..+.....                                    .+......+|..+..|+.+.+..+... ....++.
T Consensus       207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~  285 (394)
T 4gt6_A          207 LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM  285 (394)
T ss_dssp             CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred             cceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccc
Confidence            333332211                                    111123345667788888888665433 4456777


Q ss_pred             CCCCCCeEEecCCccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCcc
Q 040206          208 NSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTF  286 (347)
Q Consensus       208 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~  286 (347)
                      .+.+|+.+.+.. .++......+.. .+|+.+.+..+ ++. +            -..+|.+|.+|+.+.+..+ ++.+.
T Consensus       286 ~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~-I------------~~~aF~~C~~L~~i~ip~s-v~~I~  349 (394)
T 4gt6_A          286 NCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQ-I------------LDDAFAGCEQLERIAIPSS-VTKIP  349 (394)
T ss_dssp             TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCE-E------------CTTTTTTCTTCCEEEECTT-CCBCC
T ss_pred             cccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccE-e------------hHhHhhCCCCCCEEEECcc-cCEEh
Confidence            888888888753 344444444443 68888888653 221 1            1246889999999999654 66667


Q ss_pred             chhhhhccCCCEEEcccceee
Q 040206          287 LYWLDVLLQLQVLILRSNRFW  307 (347)
Q Consensus       287 ~~~~~~l~~L~~l~L~~n~~~  307 (347)
                      ...|.+|.+|+.+++.++...
T Consensus       350 ~~aF~~C~~L~~i~~~~~~~~  370 (394)
T 4gt6_A          350 ESAFSNCTALNNIEYSGSRSQ  370 (394)
T ss_dssp             GGGGTTCTTCCEEEESSCHHH
T ss_pred             HhHhhCCCCCCEEEECCceee
Confidence            778999999999999887643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.01  E-value=4e-08  Score=86.84  Aligned_cols=278  Identities=11%  Similarity=0.175  Sum_probs=155.8

Q ss_pred             ceEEEecCCCCCCCC-hhhhcCCCccEEeccCCc---ccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcE
Q 040206            2 TIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQ---IRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQY   74 (347)
Q Consensus         2 l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~   74 (347)
                      |+.+.+... ++.+. .+|.+|.+|+.+.+..+.   ++ .+....+. +|..|+.+.+..+ ++.++.   ..+.+|+.
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~-~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~  141 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFM-FCSELTDIPILDS-VTEIDSEAFHHCEELDT  141 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTT-TCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-Eechhhch-hcccceeeccCCc-cceehhhhhhhhccccc
Confidence            556666543 55554 489999999999987652   44 44444444 5677777766543 333333   44566777


Q ss_pred             EEccCCC--CCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCc--------------
Q 040206           75 LTLDSNL--LQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNS--------------  138 (347)
Q Consensus        75 L~l~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--------------  138 (347)
                      +.+...-  +.......+..|+.+.+..+ +..+...+|.. ..|+.+.+..+........+..+.              
T Consensus       142 i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~  219 (394)
T 4gt6_A          142 VTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPA  219 (394)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred             ccccceeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhccccceeccccccccc
Confidence            7765432  11222233355555555443 22122233322 344444443321110000011111              


Q ss_pred             -----------------------cccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccC
Q 040206          139 -----------------------TLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGN  195 (347)
Q Consensus       139 -----------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  195 (347)
                                             .+..+.+.. .+.......|..+..|+.+.+...-.. ....++..++.|+.+.+..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~  297 (394)
T 4gt6_A          220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS  297 (394)
T ss_dssp             SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT
T ss_pred             ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC
Confidence                                   122222222 122234456778889999998765433 5567788999999999974


Q ss_pred             CcccCCCCccccCCCCCCeEEecCCccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcE
Q 040206          196 NNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEV  274 (347)
Q Consensus       196 n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~  274 (347)
                       .+......+|..|.+|+.+.+..+ ++......+.. .+|+.+.+..+ ++. +.            ..+|.+|.+|+.
T Consensus       298 -~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~-I~------------~~aF~~C~~L~~  361 (394)
T 4gt6_A          298 -RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK-IP------------ESAFSNCTALNN  361 (394)
T ss_dssp             -TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB-CC------------GGGGTTCTTCCE
T ss_pred             -cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE-Eh------------HhHhhCCCCCCE
Confidence             344455678899999999999764 55455555554 78999998654 331 11            246899999999


Q ss_pred             EEccCCccCCccchhhhhccCCCEEEccccee
Q 040206          275 LDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF  306 (347)
Q Consensus       275 L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~  306 (347)
                      +++.++...   ...+..+.+|+.+.+..+.+
T Consensus       362 i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          362 IEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EEESSCHHH---HHTCBCCCCC----------
T ss_pred             EEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            999988643   23456678888888765543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.98  E-value=1.4e-09  Score=94.58  Aligned_cols=131  Identities=18%  Similarity=0.174  Sum_probs=94.4

Q ss_pred             cEEEccCC-cccCCCccccccCCCCcEEEccC-CcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcc
Q 040206          165 TSLRLSGN-HLEGPLPPSLINCVNLQFLDVGN-NNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMR  241 (347)
Q Consensus       165 ~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~  241 (347)
                      ..++.+++ .++ .+|. +..+++|+.|++++ |.+.+..+..|..+++|+.|++++|.+++..+..+. .++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35677877 777 5677 88899999999996 999877778899999999999999999887776544 4899999999


Q ss_pred             cCcccccCChhhhccccccCCCc-CccCCCCCcEEEccCCccCCccc-hhhhhccCCCEEEcccceeecccCC
Q 040206          242 MNKFSGSLPQNICKKLCFGPLPP-SLVNCQYLEVLDVGNNQIDDTFL-YWLDVLLQLQVLILRSNRFWGPIGK  312 (347)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~L~~n~~~~~~~~  312 (347)
                      +|.+.+              +|. .+..++ |+.|+|.+|.+..... .++..+.......+..+.++...|.
T Consensus        89 ~N~l~~--------------~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~  146 (347)
T 2ifg_A           89 FNALES--------------LSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG  146 (347)
T ss_dssp             SSCCSC--------------CCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred             CCccce--------------eCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence            999984              332 334444 9999999999875332 3344433333334444555544444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.97  E-value=2.1e-10  Score=99.61  Aligned_cols=156  Identities=16%  Similarity=0.149  Sum_probs=72.6

Q ss_pred             CccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccc--cCCCCcEEEccC--CcccCC-----CCccc-
Q 040206          137 NSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI--NCVNLQFLDVGN--NNLSGP-----IPECL-  206 (347)
Q Consensus       137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~--n~~~~~-----~~~~l-  206 (347)
                      +++|+.|.++++.-. ..+. + ..++|++|.+..+.++......+.  .+++|+.|+++.  +...+.     +...+ 
T Consensus       171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            345666666554211 1222 2 255666666666655432222232  456666666642  111100     01111 


Q ss_pred             -cCCCCCCeEEecCCccccCcCccc----cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCc
Q 040206          207 -GNSTRLSFLDVGNNSLSGPIPECL----ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ  281 (347)
Q Consensus       207 -~~~~~L~~L~l~~~~~~~~~~~~~----~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~  281 (347)
                       ..+++|+.|++.+|.+.+.....+    ..++|+.|+|++|.+.+.++..         ++..+..+++|++|++++|.
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~---------L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARL---------LLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHH---------HHTTHHHHTTCSEEECCSBB
T ss_pred             cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHH---------HHhhcccCCcceEEECCCCc
Confidence             235666666666666543222111    2356666666666665543332         12223445666666666666


Q ss_pred             cCCccchhhhhccCCCEEEcccce
Q 040206          282 IDDTFLYWLDVLLQLQVLILRSNR  305 (347)
Q Consensus       282 i~~~~~~~~~~l~~L~~l~L~~n~  305 (347)
                      +++.....+...- ...+++++++
T Consensus       319 i~d~~~~~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          319 LSDEMKKELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             CCHHHHHHHHHHC-CSEEECCSBC
T ss_pred             CCHHHHHHHHHHc-CCEEEecCCc
Confidence            6544443333311 3455666555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.96  E-value=2.7e-09  Score=92.77  Aligned_cols=102  Identities=18%  Similarity=0.105  Sum_probs=60.0

Q ss_pred             EEcccC-cccccCCcccCCccccEEECCC-CccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCc
Q 040206          120 LNLSNN-SLSGQIPQCLGNSTLETLDLGM-NNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN  197 (347)
Q Consensus       120 L~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  197 (347)
                      ++.+++ .+..++. .....+|+.|++++ |.+....+..+..+++|+.|++++|.++...+..|..+++|+.|+|++|.
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            455555 5554333 33445666666664 66654444556666666666666666665555566666666666666666


Q ss_pred             ccCCCCccccCCCCCCeEEecCCccc
Q 040206          198 LSGPIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       198 ~~~~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                      +.+..+..+..++ |+.|++.+|.+.
T Consensus        92 l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           92 LESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cceeCHHHcccCC-ceEEEeeCCCcc
Confidence            6644444444444 666666666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.87  E-value=5.2e-07  Score=79.25  Aligned_cols=132  Identities=14%  Similarity=0.100  Sum_probs=82.6

Q ss_pred             CccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-cc
Q 040206          155 PQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NS  233 (347)
Q Consensus       155 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~  233 (347)
                      ...+.....++.+.+..+ +......++..+..|+.+.+..+ +......++..+.+|+.+.+..+ +.......+. ..
T Consensus       210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~  286 (379)
T 4h09_A          210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred             ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence            344555566777766543 22244456677778888877665 33344556777788888877543 3323333333 36


Q ss_pred             CCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEccc
Q 040206          234 TLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRS  303 (347)
Q Consensus       234 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~  303 (347)
                      +|+.+.+.++.+...             -..+|.+|.+|+.+.|..+ ++.+....|.+|.+|+.+.+..
T Consensus       287 ~L~~i~l~~~~i~~I-------------~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          287 NLTKVVMDNSAIETL-------------EPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TCCEEEECCTTCCEE-------------CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccccccccee-------------hhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            788888877666521             1236778888888888654 5555566778888888887754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.85  E-value=3.4e-10  Score=88.94  Aligned_cols=121  Identities=19%  Similarity=0.136  Sum_probs=83.4

Q ss_pred             cccccCCCCcEEEccCC-cccC----CCCccccCCCCCCeEEecCCccccCcCcccc-----ccCCcEEEcccCcccccC
Q 040206          180 PSLINCVNLQFLDVGNN-NLSG----PIPECLGNSTRLSFLDVGNNSLSGPIPECLA-----NSTLEILDMRMNKFSGSL  249 (347)
Q Consensus       180 ~~l~~~~~L~~L~l~~n-~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~L~~L~L~~~~~~~~~  249 (347)
                      ..+...+.|++|++++| .+.+    .+...+...++|++|++++|.+.......+.     .+.|++|+|++|.+.+.+
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34556677888888877 6653    2334456677888888888887654433322     267888888888888755


Q ss_pred             ChhhhccccccCCCcCccCCCCCcEEEc--cCCccCCccc----hhhhhccCCCEEEcccceeecc
Q 040206          250 PQNICKKLCFGPLPPSLVNCQYLEVLDV--GNNQIDDTFL----YWLDVLLQLQVLILRSNRFWGP  309 (347)
Q Consensus       250 ~~~~~~~~~~~~l~~~~~~~~~L~~L~L--~~n~i~~~~~----~~~~~l~~L~~l~L~~n~~~~~  309 (347)
                      ...+         ...+...+.|++|+|  ++|.+++...    ..+...++|++|+|++|.+...
T Consensus       110 ~~~l---------~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          110 ILAL---------VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHH---------HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHH---------HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            4433         335667788999999  8899876443    3445568999999999987643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.82  E-value=4.3e-09  Score=91.40  Aligned_cols=147  Identities=14%  Similarity=0.068  Sum_probs=99.5

Q ss_pred             ccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCcccc--CCCCCCeEEecC--CccccC-----c
Q 040206          156 QTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLG--NSTRLSFLDVGN--NSLSGP-----I  226 (347)
Q Consensus       156 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~--~~~~L~~L~l~~--~~~~~~-----~  226 (347)
                      ..+..+|+|+.|.+.++.-. ..+. + .+++|++|++..+.+.......+.  .+++|+.|+++.  +...+.     .
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            44566789999999887311 2222 3 378999999999887643333443  789999999863  221111     1


Q ss_pred             Cccc---cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccc----hhhhhccCCCEE
Q 040206          227 PECL---ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL----YWLDVLLQLQVL  299 (347)
Q Consensus       227 ~~~~---~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~l  299 (347)
                      ...+   ..++|+.|+|++|.+.+.++..+..          ...+++|++|+|+.|.+++...    ..+..+++|+.|
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~----------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L  312 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE----------SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI  312 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH----------CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEE
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh----------CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEE
Confidence            1112   2489999999999998654443211          1247899999999999987433    334678999999


Q ss_pred             EcccceeecccCCccc
Q 040206          300 ILRSNRFWGPIGKLRS  315 (347)
Q Consensus       300 ~L~~n~~~~~~~~~~~  315 (347)
                      ++++|.+++..-..++
T Consensus       313 ~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          313 NMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             ECCSBBCCHHHHHHHH
T ss_pred             ECCCCcCCHHHHHHHH
Confidence            9999998865444333

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.62  E-value=8.6e-06  Score=71.42  Aligned_cols=262  Identities=12%  Similarity=0.081  Sum_probs=148.0

Q ss_pred             hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCC--CCcEEEccCCCCCccCCCCC--CCc
Q 040206           18 ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWK--NLQYLTLDSNLLQGSLPDLP--PHM   93 (347)
Q Consensus        18 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~--~~L   93 (347)
                      ++....+|+.+.+.. .++ .++...+. +|.+|+.+.|..+ ++.++...|.  +|+.+.+..+ +.......+  .+|
T Consensus        41 ~~~~~~~i~~v~ip~-~vt-~Ig~~aF~-~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~~~L  115 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GIT-SIGEANFN-SCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VKKFGDYVFQGTDL  115 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEE-EECTTTTT-TCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CCEECTTTTTTCCC
T ss_pred             ccccccCCEEEEeCC-Ccc-ChHHHHhh-CCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-eeEeccceeccCCc
Confidence            466778888888854 455 45555555 6788888888654 6666553332  4555554332 221111111  356


Q ss_pred             cEEEcccCcccccCCccccCCCCccEEEcccCcccccCCc-ccCCccccEEECCCCccc------------cccCccCCC
Q 040206           94 VQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLGNSTLETLDLGMNNFQ------------GSIPQTNAK  160 (347)
Q Consensus        94 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~------------~~~~~~~~~  160 (347)
                      +.+.+..+-.. +...+|.+. ++....+..+ +...... +..+..++.+.+......            ......+..
T Consensus       116 ~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (379)
T 4h09_A          116 DDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA  192 (379)
T ss_dssp             SEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred             ccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence            66666544222 333344433 4555554433 2212222 223445555544432211            011122333


Q ss_pred             CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccc-cCCcEEE
Q 040206          161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILD  239 (347)
Q Consensus       161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~  239 (347)
                      ...+..+.+...... ....++..+..++.+.+..+ +......++..+..|+.+.+..+ ++......+.. ..|+.+.
T Consensus       193 ~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~  269 (379)
T 4h09_A          193 AKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN  269 (379)
T ss_dssp             TCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred             cccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence            344555554433221 33345666778888887654 33244567778889999988765 44344443333 6788888


Q ss_pred             cccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccc
Q 040206          240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSN  304 (347)
Q Consensus       240 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n  304 (347)
                      +..+ +.. +            -..+|.+|.+|+.+.+.++.+..+....|.++.+|+.++|..+
T Consensus       270 l~~~-i~~-i------------~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          270 FYAK-VKT-V------------PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             ECCC-CSE-E------------CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cccc-cee-c------------cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            7543 221 1            1246889999999999999888777888999999999999643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.53  E-value=4.3e-09  Score=82.62  Aligned_cols=120  Identities=18%  Similarity=0.192  Sum_probs=81.5

Q ss_pred             ccCCCCCCccEEEccCC-cccCC----CccccccCCCCcEEEccCCcccCC----CCccccCCCCCCeEEecCCccccCc
Q 040206          156 QTNAKGCNLTSLRLSGN-HLEGP----LPPSLINCVNLQFLDVGNNNLSGP----IPECLGNSTRLSFLDVGNNSLSGPI  226 (347)
Q Consensus       156 ~~~~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~  226 (347)
                      ..+...+.|++|++++| .+...    +...+...+.|++|++++|.+.+.    +...+...++|++|++++|.+.+..
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34555667777777777 66532    233455667888888888887632    2344566678888888888887643


Q ss_pred             Cccc-----cccCCcEEEc--ccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206          227 PECL-----ANSTLEILDM--RMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD  284 (347)
Q Consensus       227 ~~~~-----~~~~L~~L~L--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~  284 (347)
                      ...+     ..+.|++|+|  ++|.+.+.+...+         ...+..++.|++|++++|.+..
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l---------~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI---------ANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH---------HHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH---------HHHHHhCCCcCEEeccCCCCCh
Confidence            3222     2267999999  7888887654433         2346677889999999998864

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.31  E-value=1.7e-07  Score=71.74  Aligned_cols=84  Identities=8%  Similarity=0.031  Sum_probs=53.0

Q ss_pred             CCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCc-cccCcCccccc-----cCCcEEEcccC-cccccCChhhhccc
Q 040206          185 CVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNS-LSGPIPECLAN-----STLEILDMRMN-KFSGSLPQNICKKL  257 (347)
Q Consensus       185 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~-----~~L~~L~L~~~-~~~~~~~~~~~~~~  257 (347)
                      -.+|++|++++|.+++.....+..+++|+.|++++|. +++.....+..     ++|++|++++| .+++.+-.      
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~------  133 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII------  133 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH------
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH------
Confidence            3468888888888776555666778888888888874 65544443332     25677777766 36543222      


Q ss_pred             cccCCCcCccCCCCCcEEEccCCc
Q 040206          258 CFGPLPPSLVNCQYLEVLDVGNNQ  281 (347)
Q Consensus       258 ~~~~l~~~~~~~~~L~~L~L~~n~  281 (347)
                             .+..|++|++|++++|.
T Consensus       134 -------~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          134 -------ALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             -------HGGGCTTCCEEEEESCT
T ss_pred             -------HHhcCCCCCEEECCCCC
Confidence                   23456667777776664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.25  E-value=4.1e-07  Score=69.65  Aligned_cols=87  Identities=8%  Similarity=0.034  Sum_probs=54.6

Q ss_pred             CCCCeEEecCCccccCcCcccc-ccCCcEEEcccC-cccccCChhhhccccccCCCcCccCCCCCcEEEccCCc-cCCcc
Q 040206          210 TRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMN-KFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ-IDDTF  286 (347)
Q Consensus       210 ~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-i~~~~  286 (347)
                      ..|+.|++++|.++......+. .++|+.|+|++| .+++..-..+..         .-..+++|++|+|++|. |++..
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~---------~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ---------LENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT---------CHHHHHHCCEEEEESCTTCCHHH
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh---------cccccCCCCEEEcCCCCcCCHHH
Confidence            4677788888777665544433 377888888877 466543222110         00013467888888774 77666


Q ss_pred             chhhhhccCCCEEEcccce
Q 040206          287 LYWLDVLLQLQVLILRSNR  305 (347)
Q Consensus       287 ~~~~~~l~~L~~l~L~~n~  305 (347)
                      ...+..+++|+.|++++|+
T Consensus       132 l~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCT
T ss_pred             HHHHhcCCCCCEEECCCCC
Confidence            6667777888888888776

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.95  E-value=4.5e-06  Score=65.13  Aligned_cols=117  Identities=15%  Similarity=0.179  Sum_probs=77.8

Q ss_pred             cccCCCCcEEEccCC-cccC----CCCccccCCCCCCeEEecCCccccCcCccccc-----cCCcEEEcccCcccccCCh
Q 040206          182 LINCVNLQFLDVGNN-NLSG----PIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-----STLEILDMRMNKFSGSLPQ  251 (347)
Q Consensus       182 l~~~~~L~~L~l~~n-~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~~~  251 (347)
                      +..-+.|++|+++++ .+.+    .+..++...+.|+.|++++|.+.+.....++.     ..|+.|+|++|.|.+.+..
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344567788888774 5542    23445667778888888888877655544443     6788888888888876655


Q ss_pred             hhhccccccCCCcCccCCCCCcEEEccCC---ccCCc----cchhhhhccCCCEEEcccceee
Q 040206          252 NICKKLCFGPLPPSLVNCQYLEVLDVGNN---QIDDT----FLYWLDVLLQLQVLILRSNRFW  307 (347)
Q Consensus       252 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~n---~i~~~----~~~~~~~l~~L~~l~L~~n~~~  307 (347)
                      .+++         ++...+.|++|+|++|   .+.+.    ..+.+..-+.|+.|+++.|...
T Consensus       117 ala~---------aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLLR---------STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHH---------HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHH---------HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            4433         4555667899999865   34432    2344556678999998877654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.90  E-value=7.2e-06  Score=67.58  Aligned_cols=75  Identities=25%  Similarity=0.229  Sum_probs=41.6

Q ss_pred             CCcccEEEcCCCcCCCCCC-----CCCCCCcEEEccCCCCCcc-CCCCCC--CccEEEcccCcccccCC-------cccc
Q 040206           48 VHTLQFLILSQNVLTSIDH-----LPWKNLQYLTLDSNLLQGS-LPDLPP--HMVQLLISNNSLTGEIP-------SSFC  112 (347)
Q Consensus        48 ~~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~~~~~~~~-~~~~~~--~L~~L~l~~~~~~~~~~-------~~~~  112 (347)
                      +++|++|+|++|.++.++.     ..+++|+.|++++|.+.+. ....+.  +|++|++.+|.+....+       ..+.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~  248 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE  248 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence            3556666666665555442     2355666666666655532 111112  66677777776654332       2356


Q ss_pred             CCCCccEEEc
Q 040206          113 NLSSIQYLNL  122 (347)
Q Consensus       113 ~l~~L~~L~l  122 (347)
                      .+++|+.|+-
T Consensus       249 ~~P~L~~LDg  258 (267)
T 3rw6_A          249 RFPKLLRLDG  258 (267)
T ss_dssp             HCTTCCEESS
T ss_pred             HCcccCeECC
Confidence            6788888863

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.86  E-value=1.4e-05  Score=65.89  Aligned_cols=66  Identities=18%  Similarity=0.281  Sum_probs=42.2

Q ss_pred             cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhcc--CCCEEEcccceeeccc
Q 040206          233 STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLL--QLQVLILRSNRFWGPI  310 (347)
Q Consensus       233 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~l~L~~n~~~~~~  310 (347)
                      ++|+.|+|++|.+.+.           ..++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|+|++|++.+.+
T Consensus       170 ~~L~~L~Ls~N~l~~l-----------~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRL-----------DDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             TTCCEEECTTSCCCCC-----------GGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred             CCCCEEECCCCCCCCC-----------ccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence            5677777777777641           11333455677788888888877754  2233333  7788888888877655


Q ss_pred             C
Q 040206          311 G  311 (347)
Q Consensus       311 ~  311 (347)
                      |
T Consensus       237 ~  237 (267)
T 3rw6_A          237 R  237 (267)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.43  E-value=2.5e-05  Score=60.98  Aligned_cols=93  Identities=17%  Similarity=0.134  Sum_probs=69.0

Q ss_pred             CccccCCCCCCeEEecCC-ccccCcCcccc-----ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEE
Q 040206          203 PECLGNSTRLSFLDVGNN-SLSGPIPECLA-----NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLD  276 (347)
Q Consensus       203 ~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~-----~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~  276 (347)
                      ...+..-+.|+.|+++++ .+.......++     ...|+.|+|++|.+.+.+...         +...+...+.|++|+
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~a---------lA~aL~~N~tL~~L~  104 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG---------LIELIETSPSLRVLN  104 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTT---------HHHHHHHCSSCCEEE
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHH---------HHHHHhcCCccCeEe
Confidence            345567789999999985 77654433322     278999999999999865553         344566778999999


Q ss_pred             ccCCccCCccch----hhhhccCCCEEEcccc
Q 040206          277 VGNNQIDDTFLY----WLDVLLQLQVLILRSN  304 (347)
Q Consensus       277 L~~n~i~~~~~~----~~~~l~~L~~l~L~~n  304 (347)
                      |++|.|++....    .+..-..|++|+|++|
T Consensus       105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            999999875444    3444578999999865

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.04  E-value=0.0013  Score=47.80  Aligned_cols=55  Identities=18%  Similarity=0.254  Sum_probs=40.2

Q ss_pred             EEEccCCCCC--ccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCccc
Q 040206           74 YLTLDSNLLQ--GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS  128 (347)
Q Consensus        74 ~L~l~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  128 (347)
                      .++.++++++  ..+..+++++++|+|++|.++.+.+..|..+++|+.|++.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666666  555566677788888888877666677788888888888888664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.02  E-value=0.0014  Score=47.55  Aligned_cols=39  Identities=21%  Similarity=0.085  Sum_probs=32.8

Q ss_pred             CCcEEEccCCccCCccchhhhhccCCCEEEcccceeecc
Q 040206          271 YLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP  309 (347)
Q Consensus       271 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~  309 (347)
                      +|++|+|++|.|+......|..+++|+.|+|++|++..+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            588889999988887778888888899999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	347
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.5 bits (192), Expect = 9e-17
 Identities = 53/213 (24%), Positives = 80/213 (37%), Gaps = 15/213 (7%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP- 68
            N      +L     LE L  + NQI    P  +       L  L L+ N L  I  L  
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPLGIL----TNLDELSLNGNQLKDIGTLAS 239

Query: 69  WKNLQYLTLDSNLLQGSLP-DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127
             NL  L L +N +    P      + +L +  N ++   P     L+++  L L+ N  
Sbjct: 240 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ- 296

Query: 128 SGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVN 187
              I        L  L L  NN     P ++     L  L  + N +      SL N  N
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISPVSSLT--KLQRLFFANNKVSDV--SSLANLTN 352

Query: 188 LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNN 220
           + +L  G+N +S   P  L N TR++ L + + 
Sbjct: 353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.6 bits (174), Expect = 1e-14
 Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 16/206 (7%)

Query: 42  WMWDIGVHTLQFLILSQNVLTSI-DHLPWKNLQYLTLDSNLLQG--SLPDLPPHMVQLLI 98
                 +  L+ LI + N ++ I       NL  L+L+ N L+   +L  L  ++  L +
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLT-NLTDLDL 248

Query: 99  SNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTN 158
           +NN ++   P     L+ +  L L  N +S   P     +        +N  Q       
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL---ELNENQLEDISPI 303

Query: 159 AKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVG 218
           +   NLT L L  N++    P  + +   LQ L   NN +S      L N T +++L  G
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAG 359

Query: 219 NNSLSGPIPECLAN-STLEILDMRMN 243
           +N +S   P  LAN + +  L +   
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 1e-11
 Identities = 52/214 (24%), Positives = 81/214 (37%), Gaps = 27/214 (12%)

Query: 91  PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNF 150
            ++  L+ +NN ++   P      +++  L+L+ N L   I      + L  LDL  N  
Sbjct: 197 TNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQI 253

Query: 151 QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNST 210
               P +      LT L+L  N +    P  L     L  L++  N L    P    N  
Sbjct: 254 SNLAPLSGL--TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLK 307

Query: 211 RLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQ 270
            L++L +  N++S   P   + + L+ L    NK S                  SL N  
Sbjct: 308 NLTYLTLYFNNISDISPVS-SLTKLQRLFFANNKVSD---------------VSSLANLT 351

Query: 271 YLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSN 304
            +  L  G+NQI D  L  L  L ++  L L   
Sbjct: 352 NINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.7 bits (182), Expect = 8e-16
 Identities = 55/263 (20%), Positives = 90/263 (34%), Gaps = 16/263 (6%)

Query: 25  LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNL 81
              LDL  N+I            +  L  LIL  N ++ I      P   L+ L L  N 
Sbjct: 33  TALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 82  LQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN--NSLSGQIPQCLGNST 139
           L+     +P  + +L +  N +T    S F  L+ +  + L       SG          
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 140 LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLS 199
             +     +    +IPQ      +LT L L GN +      SL    NL  L +  N++S
Sbjct: 151 KLSYIRIADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 200 GPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCF 259
                 L N+  L  L + NN L         +  ++++ +  N  S     + C     
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC----- 263

Query: 260 GPLPPSLVNCQYLEVLDVGNNQI 282
              P           + + +N +
Sbjct: 264 --PPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 4e-09
 Identities = 38/213 (17%), Positives = 59/213 (27%), Gaps = 14/213 (6%)

Query: 116 SIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE 175
            ++ +  S+  L  ++P+ L       LDL  N              NL +L L  N + 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 176 GPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTL 235
              P +    V L+ L +  N L     +       L   +     +   +   L    +
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 236 EILDMRMNKFSG----------SLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT 285
             L     K SG           L            +P  L     L  L +  N+I   
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKV 186

Query: 286 FLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWS 318
               L  L  L  L L  N          +   
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.9 bits (128), Expect = 8e-09
 Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 7/197 (3%)

Query: 10  CNISEFPDILRTQHQ-LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP 68
             + E P+ +    Q L   +    ++R  + + +  + V  L    L  + + +     
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 69  WKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 128
            K L Y+ +    +      LPP + +L +  N +T    +S   L+++  L LS NS+S
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 129 GQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG------PLPPSL 182
                 L N+         NN    +P   A    +  + L  N++          P   
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 183 INCVNLQFLDVGNNNLS 199
               +   + + +N + 
Sbjct: 269 TKKASYSGVSLFSNPVQ 285

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.1 bits (144), Expect = 8e-11
 Identities = 46/247 (18%), Positives = 76/247 (30%), Gaps = 14/247 (5%)

Query: 21  TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSN 80
                 ++    N +    P+      +H L     + +          K L  L    N
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135

Query: 81  LLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN 137
            L G+LP      P++V +    N ++G IP S+ + S +      + +           
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195

Query: 138 STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN 197
           +          N               T       +        +    NL  LD+ NN 
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255

Query: 198 LSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKL 257
           + G +P+ L     L  L+V  N+L G IP+       ++     NK            L
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC-----------L 304

Query: 258 CFGPLPP 264
           C  PLP 
Sbjct: 305 CGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 62/234 (26%), Positives = 93/234 (39%), Gaps = 15/234 (6%)

Query: 92  HMVQLLISNNSLTG--EIPSSFCNLSSIQYLNLSN--NSLSGQIPQCLGNSTLETLDLGM 147
            +  L +S  +L     IPSS  NL  + +L +    N +    P     + L  L +  
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 148 NNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLG 207
            N  G+IP   ++   L +L  S N L G LPPS+ +  NL  +    N +SG IP+  G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 208 NSTRLSF-LDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLC-------- 258
           + ++L   + +  N L+G IP   AN  L  +D+  N   G                   
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 259 --FGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI 310
                    +   + L  LD+ NN+I  T    L  L  L  L +  N   G I
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 113 NLSSIQYLNLSNNSLSG--QIPQCLGN-STLETLDL-GMNNFQGSIPQTNAKGCNLTSLR 168
               +  L+LS  +L     IP  L N   L  L + G+NN  G IP   AK   L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 169 LSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE 228
           ++  ++ G +P  L     L  LD   N LSG +P  + +   L  +    N +SG IP+
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 229 C 229
            
Sbjct: 168 S 168

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.6 bits (115), Expect = 6e-08
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 96  LLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIP 155
           L +++  LT  +      L  + +L+LS+N L    P       LE L    ++      
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ--ASDNALENV 58

Query: 156 QTNAKGCNLTSLRLSGNHLEG-PLPPSLINCVNLQFLDVGNNNLSG 200
              A    L  L L  N L+       L++C  L  L++  N+L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 6e-06
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 52  QFLILSQNVLTSIDHLPW-KNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSS 110
           + L L+   LT + HL     + +L L  N L+   P L       ++  +    E    
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 111 FCNLSSIQYLNLSNNSL-SGQIPQCLGN-STLETLDLGMNNFQG 152
             NL  +Q L L NN L      Q L +   L  L+L  N+   
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 118 QYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGP 177
           + L+L++  L+  +        +  LDL  N  +   P   A         L  +     
Sbjct: 1   RVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLRALPP---ALAALRCLEVLQASDNALE 56

Query: 178 LPPSLINCVNLQFLDVGNNNL-SGPIPECLGNSTRLSFLDVGNNSLSG 224
               + N   LQ L + NN L      + L +  RL  L++  NSL  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 16/133 (12%)

Query: 167 LRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI 226
           L L+   L       L   + +  LD+ +N L    P  L     L  L   +N+    +
Sbjct: 3   LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA-LENV 58

Query: 227 PECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTF 286
                   L+ L +  N+                     LV+C  L +L++  N +    
Sbjct: 59  DGVANLPRLQELLLCNNRLQQ------------SAAIQPLVSCPRLVLLNLQGNSLCQEE 106

Query: 287 LYWLDVLLQLQVL 299
                +   L  +
Sbjct: 107 GIQERLAEMLPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 18/119 (15%)

Query: 189 QFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGS 248
           + L + + +L+  +   L     ++ LD+ +N L    P   A   LE+L          
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD------ 52

Query: 249 LPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT-FLYWLDVLLQLQVLILRSNRF 306
                            + N   L+ L + NN++  +  +  L    +L +L L+ N  
Sbjct: 53  ---------NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 6e-08
 Identities = 41/239 (17%), Positives = 74/239 (30%), Gaps = 17/239 (7%)

Query: 87  PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLG 146
             +P    ++ +  N ++    +SF    ++  L L +N L+           L      
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 147 MNNFQGSI--PQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPE 204
            +N Q     P T      L +L L    L+   P        LQ+L + +N L     +
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 205 CLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLP 263
              +   L+ L +  N +S           +L+ L +  N+ +   P           L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 264 PS-----------LVNCQYLEVLDVGNNQID-DTFLYWLDVLLQLQVLILRSNRFWGPI 310
                        L   + L+ L + +N    D     L     LQ     S+     +
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVPCSL 264

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 43/250 (17%), Positives = 75/250 (30%), Gaps = 8/250 (3%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWD-----IGVHTLQFLILSQNVLTSI 64
             +   P  +      + + L  N+I     +         I       L        + 
Sbjct: 21  QGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78

Query: 65  DHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN 124
             L  +           +  +       +  L +    L    P  F  L+++QYL L +
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 125 NSLSGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI 183
           N+L         +   L  L L  N       +      +L  L L  N +    P +  
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 184 NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMN 243
           +   L  L +  NNLS    E L     L +L + +N            + L+      +
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 258

Query: 244 KFSGSLPQNI 253
           +   SLPQ +
Sbjct: 259 EVPCSLPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 36/187 (19%), Positives = 58/187 (31%), Gaps = 8/187 (4%)

Query: 42  WMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQ---LLI 98
           +     +HTL         L          LQYL L  N LQ    D    +     L +
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160

Query: 99  SNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSI-PQT 157
             N ++     +F  L S+  L L  N ++   P    +           N   ++  + 
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220

Query: 158 NAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDV 217
            A    L  LRL+ N        +      LQ     ++ +   +P+ L          +
Sbjct: 221 LAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRL 276

Query: 218 GNNSLSG 224
             N L G
Sbjct: 277 AANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 11/143 (7%)

Query: 16  PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYL 75
            D  R    L  L L  N+I           G+H+L  L+L QN +  +    +++L  L
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 76  TLDSNL------LQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
                       L          +  L +++N    +  +     + +Q    S++ +  
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPC 262

Query: 130 QIPQCLGNSTLETLDLGMNNFQG 152
            +PQ L    L    L  N+ QG
Sbjct: 263 SLPQRLAGRDL--KRLAANDLQG 283

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 7e-07
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 2/129 (1%)

Query: 118 QYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGP 177
           Q L+L+  +L   +   L +  +       +     + + +     +  + LS + +E  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 61

Query: 178 LPPSLI-NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLE 236
               ++  C  LQ L +    LS PI   L  ++ L  L++   S           S+  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 237 ILDMRMNKF 245
            LD     +
Sbjct: 122 RLDELNLSW 130

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 35/226 (15%), Positives = 65/226 (28%), Gaps = 6/226 (2%)

Query: 80  NLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL--GN 137
           NL       L    V       S   +  +   +   +Q+++LSN+ +       +    
Sbjct: 11  NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 70

Query: 138 STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN 197
           S L+ L L        I  T AK  NL  L LSG           +     +  ++  + 
Sbjct: 71  SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 130

Query: 198 LSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKL 257
                 + +  +       +   +LSG       +    ++    N             +
Sbjct: 131 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH---LDLSDSVM 187

Query: 258 CFGPLPPSLVNCQYLEVLDVGN-NQIDDTFLYWLDVLLQLQVLILR 302
                        YL+ L +     I    L  L  +  L+ L + 
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 38/181 (20%), Positives = 53/181 (29%), Gaps = 22/181 (12%)

Query: 87  PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQI--------------- 131
           PDLP     L +S N L     ++    + +  LNL    L+                  
Sbjct: 27  PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH 86

Query: 132 -------PQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLIN 184
                          L  LD+  N               L  L L GN L+   P  L  
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 185 CVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNK 244
              L+ L + NNNL+      L     L  L +  NSL         +  L    +  N 
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206

Query: 245 F 245
           +
Sbjct: 207 W 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 42/192 (21%), Positives = 58/192 (30%), Gaps = 9/192 (4%)

Query: 11  NISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILS---QNVLTSIDHL 67
           N++  P  L        L LS+N +     + +       L  L L       L     L
Sbjct: 21  NLTALPPDLPKD--TTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVDGTL 76

Query: 68  PWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127
           P      L+ +       L    P +  L +S N LT     +   L  +Q L L  N L
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 128 SGQIPQCLGNSTLETL-DLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCV 186
               P  L  +       L  NN             NL +L L  N L   +P       
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195

Query: 187 NLQFLDVGNNNL 198
            L F  +  N  
Sbjct: 196 LLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 22/142 (15%), Positives = 40/142 (28%)

Query: 10  CNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW 69
               +    L     L+        +     +      +      + S  +         
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 70  KNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
           + L     +   L   L    P + +L ++NN+LT         L ++  L L  NSL  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 130 QIPQCLGNSTLETLDLGMNNFQ 151
                 G+  L    L  N + 
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWL 208

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 23  HQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLL 82
             LE L++S N++   +P+         L+ LI S N L  +  LP +NL+ L ++ N L
Sbjct: 284 PSLEELNVSNNKLI-ELPALP-----PRLERLIASFNHLAEVPELP-QNLKQLHVEYNPL 336

Query: 83  QGSLPDLPPHMVQLLISN 100
           +   PD+P  +  L +++
Sbjct: 337 R-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 41  SWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISN 100
            +     +    + + + +           +L+ L + +N L   LP LPP + +L+ S 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASF 313

Query: 101 NSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDL 145
           N L  E+P    NL   + L++  N L  + P    +  +E L +
Sbjct: 314 NHLA-EVPELPQNL---KQLHVEYNPLR-EFPDIPES--VEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 90  PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNN 149
              +   L   N+ + EI S      S++ LN+SNN L  ++P       LE L    N+
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR--LERLIASFNH 315

Query: 150 FQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQF 190
               +P+      NL  L +  N L    P    +  +L+ 
Sbjct: 316 LA-EVPELPQ---NLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 70  KNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
           +    L L++  L  SLP+LPPH+  L+ S NSLT E+P    +L S+   N +  +LS 
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD 95

Query: 130 QIPQC 134
             P  
Sbjct: 96  LPPLL 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 169 LSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE 228
              N     +        +L+ L+V NN L   +P        L  L    N L+  +PE
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLAE-VPE 321

Query: 229 CLANSTLEILDMRMNKFSG 247
              N  L+ L +  N    
Sbjct: 322 LPQN--LKQLHVEYNPLRE 338

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 4e-05
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 14/91 (15%)

Query: 162 CNLTSLRLSGNHLEG----PLPPSLINCVNLQFLDVGNNNLSGPIPECLG-----NSTRL 212
             L  L L+   +       L  +L+   +L+ LD+ NN L       L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 213 SFLDVGNNSLSGPIPECLA-----NSTLEIL 238
             L + +   S  + + L        +L ++
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 7e-05
 Identities = 14/94 (14%), Positives = 34/94 (36%), Gaps = 11/94 (11%)

Query: 163 NLTSLRLSGNHLEGPLPPSLINCV-NLQFLDVGNNNLSG----PIPECLGNSTRLSFLDV 217
           ++ SL +    L       L+  +   Q + + +  L+      I   L  +  L+ L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 218 GNNSLSGPIPECLA------NSTLEILDMRMNKF 245
            +N L      C+       +  ++ L ++    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 5/95 (5%)

Query: 140 LETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHLEG----PLPPSLINCVNLQFLDVG 194
           +++LD+       +              +RL    L       +  +L     L  L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 195 NNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPEC 229
           +N L      C+    +     +   SL       
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 14/95 (14%)

Query: 71  NLQYLTLDSNLLQGS-LPDLPPHMVQ---LLISNNSLTGE----IPSSFCNLSSIQYLNL 122
           ++Q L +    L  +   +L P + Q   + + +  LT      I S+     ++  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 123 SNNSLSGQIPQCLG------NSTLETLDLGMNNFQ 151
            +N L      C+       +  ++ L L      
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 4e-04
 Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 11/87 (12%)

Query: 98  ISNNSLTGEIPSSFC-NLSSIQYLNLSNNSLSGQIPQCLG-----NSTLETLDLGMNNFQ 151
           I    L+    +     L   Q + L +  L+    + +      N  L  L+L  N   
Sbjct: 9   IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68

Query: 152 GSIPQTNAKG-----CNLTSLRLSGNH 173
                   +G     C +  L L    
Sbjct: 69  DVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 4e-04
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 10/71 (14%)

Query: 96  LLISNNSLTGE----IPSSFCNLSSIQYLNLSNNSLSGQIPQCLG------NSTLETLDL 145
           L +++  ++      + ++     S++ L+LSNN L       L          LE L L
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 146 GMNNFQGSIPQ 156
               +   +  
Sbjct: 434 YDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 4e-04
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 10/85 (11%)

Query: 108 PSSFCNLSSIQYLNLSNNSLSGQIPQCLG-----NSTLETLDLGMNNFQGSIPQTNAKG- 161
                  S ++ L L++  +S      L      N +L  LDL  N    +      +  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 162 ----CNLTSLRLSGNHLEGPLPPSL 182
               C L  L L   +    +   L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 6e-04
 Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 13/98 (13%)

Query: 203 PECLGNSTRLSFLDVGNNSLSGPIPECLA-----NSTLEILDMRMNKFSGSLPQNICKKL 257
                  + L  L + +  +S      LA     N +L  LD+  N    +    + + +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 258 CFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQ 295
                         LE L + +    +     L  L +
Sbjct: 422 R--------QPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.003
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 133 QCLGNSTLETLDLGMNNFQG----SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI----- 183
                S L  L L   +       S+  T     +L  L LS N L       L+     
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 184 NCVNLQFLDVGNNNLSGPIPECL 206
               L+ L + +   S  + + L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRL 446

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 7/145 (4%)

Query: 77  LDSNLLQGSLPDL-PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL 135
           L + L++ +          +L +    +   I +    L     ++ S+N +  ++    
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFP 60

Query: 136 GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPS----LINCVNLQFL 191
               L+TL +  N         +    +LT L L+ N L           L +   L  L
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120

Query: 192 DVGNNNLSGPIPECLGNSTRLSFLD 216
                N        +    ++  LD
Sbjct: 121 RNPVTNKKHYRLYVIYKVPQVRVLD 145

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 7/193 (3%)

Query: 113 NLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGN 172
             +     NL   S++  + Q   NS ++ +    ++ +           N+T L L+GN
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNS-IDQIIANNSDIKSVQGIQYLP--NVTKLFLNGN 78

Query: 173 HLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN 232
            L    P + +  +   FLD         + +     +     +  ++         L +
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 233 STLEILDMRMNKFSGSLPQNICKKLCFGPL--PPSLVNCQYLEVLDVGNNQIDDTFLYWL 290
             L    +        L +     L    +     L     L+ L +  N I D  L  L
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRAL 196

Query: 291 DVLLQLQVLILRS 303
             L  L VL L S
Sbjct: 197 AGLKNLDVLELFS 209

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 35/143 (24%), Positives = 50/143 (34%), Gaps = 14/143 (9%)

Query: 71  NLQYLTLDSNLLQGSLPDLPPH-MVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
           +     LD   L+ S PDL    +  +L   +S+   +     N+  +  LNLSNN L  
Sbjct: 21  DGSQQALDLKGLR-SDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYR 79

Query: 130 Q--IPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPS----- 181
              +   +     L+ L+L  N  +        KG  L  L L GN L            
Sbjct: 80  LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS 139

Query: 182 --LINCVNLQFLDVGNNNLSGPI 202
                   L  LD   + L  PI
Sbjct: 140 AIRERFPKLLRLD--GHELPPPI 160

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 35/220 (15%), Positives = 66/220 (30%), Gaps = 16/220 (7%)

Query: 24  QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW-KNLQYLTLDSNLL 82
               +   K+ +   +     D     +  L      +T+I+ + +  NL  L L  N +
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLD----GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

Query: 83  QGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLET 142
                      ++ L     L           +     ++    L+      +      +
Sbjct: 76  T------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 143 LDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPI 202
               +      I   +          LS  + +      L N   L  L   +N +S   
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 203 PECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMR 241
           P  L +   L  + + NN +S   P  LAN S L I+ + 
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 24/220 (10%), Positives = 63/220 (28%), Gaps = 9/220 (4%)

Query: 87  PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLG 146
            DLP + ++L      L      +F     ++ + +S N +   I   + ++  +  ++ 
Sbjct: 25  SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 84

Query: 147 MNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECL 206
           +      +        N              L  S     +L  +   ++     +    
Sbjct: 85  IEKANNLLYINPEAFQN--------LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 136

Query: 207 GNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPP-S 265
             +      +         +   L  + ++ +       +     N+        LP   
Sbjct: 137 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV 196

Query: 266 LVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305
                   +LD+   +I     Y L+ L +L+     + +
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	347
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.81
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.81
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.31

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=4.8e-25  Score=193.30  Aligned_cols=281  Identities=23%  Similarity=0.244  Sum_probs=208.2

Q ss_pred             CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccC
Q 040206            1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDS   79 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~   79 (347)
                      ++++|++++++++.++ .++++++|++|++++|+++ .+++ +.  .+++|++|++++|.+..+.. ..+++|+.|++++
T Consensus        45 ~l~~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~N~l~-~l~~-l~--~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~  119 (384)
T d2omza2          45 QVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLT-DITP-LK--NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN  119 (384)
T ss_dssp             TCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GT--TCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCEEECCCCCCCCcc-ccccCCCCCEEeCcCCcCC-CCcc-cc--CCcccccccccccccccccccccccccccccccc
Confidence            4789999999999875 4889999999999999998 4543 44  45999999999999988775 7889999999998


Q ss_pred             CCCCccCCCC-CCCccEEEcccCcc-----------------------------------------cccCCccccCCCCc
Q 040206           80 NLLQGSLPDL-PPHMVQLLISNNSL-----------------------------------------TGEIPSSFCNLSSI  117 (347)
Q Consensus        80 ~~~~~~~~~~-~~~L~~L~l~~~~~-----------------------------------------~~~~~~~~~~l~~L  117 (347)
                      +......... ...+.......+.+                                         .......+..++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (384)
T d2omza2         120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL  199 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence            8776422211 12222222211111                                         01122345567889


Q ss_pred             cEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCc
Q 040206          118 QYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN  197 (347)
Q Consensus       118 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~  197 (347)
                      +.++++++.+....+ ....++|+++++++|.+..  ...+..+++++.+++++|.++..  ..+..+++|+.++++++.
T Consensus       200 ~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~~~  274 (384)
T d2omza2         200 ESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQ  274 (384)
T ss_dssp             SEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSC
T ss_pred             ceeeccCCccCCCCc-ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCC--CcccccccCCEeeccCcc
Confidence            999999988875543 3456789999999998763  23567788999999999988744  347888999999999998


Q ss_pred             ccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEc
Q 040206          198 LSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDV  277 (347)
Q Consensus       198 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L  277 (347)
                      +.+.  ..+..++.++.+.+..|.+.+ .......++++.+++++|.+++              ++ .+..+++|++|++
T Consensus       275 l~~~--~~~~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~~L~ls~n~l~~--------------l~-~l~~l~~L~~L~L  336 (384)
T d2omza2         275 ISNI--SPLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISD--------------IS-PVSSLTKLQRLFF  336 (384)
T ss_dssp             CCCC--GGGTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSC--------------CG-GGGGCTTCCEEEC
T ss_pred             cCCC--Ccccccccccccccccccccc-ccccchhcccCeEECCCCCCCC--------------Cc-ccccCCCCCEEEC
Confidence            8743  246778888999998888774 3344455788999999998884              32 2677888999999


Q ss_pred             cCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206          278 GNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG  311 (347)
Q Consensus       278 ~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~  311 (347)
                      ++|.+++..  .+..+++|++|++++|++++-.|
T Consensus       337 ~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         337 ANNKVSDVS--SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             CCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh
Confidence            999887632  47888999999999999887543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=6e-26  Score=193.57  Aligned_cols=242  Identities=26%  Similarity=0.371  Sum_probs=141.5

Q ss_pred             CceEEEecCCCCC---CCChhhhcCCCccEEeccC-CcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCc
Q 040206            1 KTIKTQVKTCNIS---EFPDILRTQHQLEWLDLSK-NQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQ   73 (347)
Q Consensus         1 ~l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~   73 (347)
                      ++++|+|+++++.   .+|+.+.++++|++|++++ |.+++.+|..+..+  ++|++|++++|.+.....   ..+.+|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L--~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL--TQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC--TTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccc--cccchhhhccccccccccccccchhhhc
Confidence            3678888888777   5788888899999999986 67888888888765  888888888887766554   3344555


Q ss_pred             EEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCcc-ccEEECCCCccc
Q 040206           74 YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNST-LETLDLGMNNFQ  151 (347)
Q Consensus        74 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~-L~~L~l~~~~~~  151 (347)
                      ++++++|.+.                     ...|..+.+++.++.+++++|.+.+..+..+ .... ++.+++++|.+.
T Consensus       129 ~l~l~~N~~~---------------------~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         129 TLDFSYNALS---------------------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             EEECCSSEEE---------------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             cccccccccc---------------------ccCchhhccCcccceeecccccccccccccccccccccccccccccccc
Confidence            5555555443                     3444455555555555555555543333322 2222 245555555555


Q ss_pred             cccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc
Q 040206          152 GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA  231 (347)
Q Consensus       152 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  231 (347)
                      +..+..+..+... .+++..+......+..+..+++++.++++++.+.+.+ ..+..+++|+.|++++|++++..|..+.
T Consensus       188 ~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~  265 (313)
T d1ogqa_         188 GKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLT  265 (313)
T ss_dssp             EECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred             ccccccccccccc-ccccccccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHh
Confidence            4444444443322 4555555544445555555556666666666555332 2455555666666666666544444333


Q ss_pred             c-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCc
Q 040206          232 N-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ  281 (347)
Q Consensus       232 ~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~  281 (347)
                      . ++|++|+|++|+++|.+|.              ++.+++|+.+++++|+
T Consensus       266 ~L~~L~~L~Ls~N~l~g~iP~--------------~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         266 QLKFLHSLNVSFNNLCGEIPQ--------------GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GCTTCCEEECCSSEEEEECCC--------------STTGGGSCGGGTCSSS
T ss_pred             CCCCCCEEECcCCcccccCCC--------------cccCCCCCHHHhCCCc
Confidence            2 5566666666666654332              3455566666666665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=4.7e-24  Score=181.05  Aligned_cols=262  Identities=23%  Similarity=0.252  Sum_probs=164.0

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCCh-hhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEcc
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPS-WMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLD   78 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~   78 (347)
                      +.++-++.+++.+|..+.  +++++|++++|+++ .+++ .+.  ++++|++|+++++.+..+..   ..+++|++|+++
T Consensus        13 ~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~--~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDLP--PDTALLDLQNNKIT-EIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TEEECTTSCCCSCCCSCC--TTCCEEECCSSCCC-CBCTTTTT--TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCCCccCCCCC--CCCCEEECcCCcCC-CcChhHhh--ccccccccccccccccccchhhhhCCCccCEeccc
Confidence            455666667888887664  67888899888887 5554 444  44888888888888887765   456778888888


Q ss_pred             CCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccC
Q 040206           79 SNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTN  158 (347)
Q Consensus        79 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  158 (347)
                      +|++........+.++.|.+.+|.+....+..+.....+..+....+.....                     ...+..+
T Consensus        88 ~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~---------------------~~~~~~~  146 (305)
T d1xkua_          88 KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIENGAF  146 (305)
T ss_dssp             SSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBCTTGG
T ss_pred             CCccCcCccchhhhhhhhhccccchhhhhhhhhhcccccccccccccccccc---------------------CCCcccc
Confidence            8888776666667777777777776655444555555555565555432211                     1122233


Q ss_pred             CCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcE
Q 040206          159 AKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEI  237 (347)
Q Consensus       159 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~  237 (347)
                      ..+++|+.+++.++.+.. .+..  .++++++|++++|......+..+..++.++.|++++|.+.+..+..+. .++|++
T Consensus       147 ~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         147 QGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             GGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             ccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccccee
Confidence            444455555555555442 2221  245566666666655555555566666666666666666554443333 256677


Q ss_pred             EEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchh------hhhccCCCEEEcccceee
Q 040206          238 LDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYW------LDVLLQLQVLILRSNRFW  307 (347)
Q Consensus       238 L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~------~~~l~~L~~l~L~~n~~~  307 (347)
                      |+|++|+++              .+|.++..+++|++|+|++|+|+......      ....++|+.++|++|++.
T Consensus       224 L~L~~N~L~--------------~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         224 LHLNNNKLV--------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             EECCSSCCS--------------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             eeccccccc--------------ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            777777666              35556677777777777777776543332      234567788888888774

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=3.2e-24  Score=182.78  Aligned_cols=241  Identities=26%  Similarity=0.402  Sum_probs=142.6

Q ss_pred             cccEEEcCCCcCCC---CCC--CCCCCCcEEEccC-CCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEE
Q 040206           50 TLQFLILSQNVLTS---IDH--LPWKNLQYLTLDS-NLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYL  120 (347)
Q Consensus        50 ~L~~L~l~~~~l~~---~~~--~~~~~L~~L~l~~-~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  120 (347)
                      +++.|+++++.++.   ++.  ..+++|++|++++ |.+.+.++..   +++|++|++++|.+....+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            35555555554443   111  3445555555543 3443322211   2455666666666655555566666777777


Q ss_pred             EcccCcccccCCccc-CCccccEEECCCCccccccCccCCCCCCc-cEEEccCCcccCCCccccccCCCCcEEEccCCcc
Q 040206          121 NLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNL-TSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNL  198 (347)
Q Consensus       121 ~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  198 (347)
                      ++..|.+....+..+ .++.++.+++++|.+....|..+..+..+ +.+.++.++++...+..+..+.. ..++++.+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            777766654444333 44567777777776665666666555554 66666666666555555555443 3566666666


Q ss_pred             cCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEcc
Q 040206          199 SGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVG  278 (347)
Q Consensus       199 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~  278 (347)
                      .+..+..+..+++++.+++.++.+.+..+.....++++.|++++|++++.             +|..++++++|++|+|+
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~-------------iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT-------------LPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEEC-------------CCGGGGGCTTCCEEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCccCeeccc-------------CChHHhCCCCCCEEECc
Confidence            66666666666777777777776665555444446677777777777653             44455666677777777


Q ss_pred             CCccCCccchhhhhccCCCEEEcccce
Q 040206          279 NNQIDDTFLYWLDVLLQLQVLILRSNR  305 (347)
Q Consensus       279 ~n~i~~~~~~~~~~l~~L~~l~L~~n~  305 (347)
                      +|++++.+|. ++.+++|+.+++++|+
T Consensus       277 ~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         277 FNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             CCcccccCCC-cccCCCCCHHHhCCCc
Confidence            7777655553 4566677777777776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=5.2e-23  Score=174.52  Aligned_cols=221  Identities=23%  Similarity=0.227  Sum_probs=168.7

Q ss_pred             CceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccC
Q 040206            1 KTIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDS   79 (347)
Q Consensus         1 ~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~   79 (347)
                      .+++|+|++|.++.+|+ +|.++++|++|++++|.+....+..+..  ++.|++|++++|.++.++...+..++.|.+.+
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~--l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~  109 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP--LVKLERLYLSKNQLKELPEKMPKTLQELRVHE  109 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT--CTTCCEEECCSSCCSBCCSSCCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhC--CCccCEecccCCccCcCccchhhhhhhhhccc
Confidence            37899999999999986 7999999999999999999555656654  49999999999999999998888999999999


Q ss_pred             CCCCccCCC---CCCCccEEEcccCccc--ccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCcccccc
Q 040206           80 NLLQGSLPD---LPPHMVQLLISNNSLT--GEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSI  154 (347)
Q Consensus        80 ~~~~~~~~~---~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  154 (347)
                      +.+......   .....+.+....+...  ......+..+++|+.+++.+|.+......  ..++++.|++++|......
T Consensus       110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~  187 (305)
T d1xkua_         110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVD  187 (305)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEEC
T ss_pred             cchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCCCC
Confidence            988764432   2356677887776543  33455677888999999998887754332  2467888888887776666


Q ss_pred             CccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCc
Q 040206          155 PQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI  226 (347)
Q Consensus       155 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  226 (347)
                      +..+..++.++.|++++|.+....+..+..+++|++|++++|.+. .+|.++..+++|++|++++|+++...
T Consensus       188 ~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG  258 (305)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             hhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccC
Confidence            667777777777777777777666666777777777777777776 34566777777777777777766443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.2e-23  Score=172.15  Aligned_cols=225  Identities=20%  Similarity=0.166  Sum_probs=185.7

Q ss_pred             EEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccC-CccccEEECC-CCccc
Q 040206           74 YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLG-MNNFQ  151 (347)
Q Consensus        74 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~-~~~~~  151 (347)
                      .+..+++++...+...++.+++|++++|.++.+.+..|.++++|++|+++++.+....+..+. ...++.+... .+.+.
T Consensus        15 ~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~   94 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR   94 (284)
T ss_dssp             EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred             EEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            445666666666666667788888888888866667889999999999999988876666553 4567777665 45565


Q ss_pred             cccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc
Q 040206          152 GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA  231 (347)
Q Consensus       152 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  231 (347)
                      ...+..+..+++|++|+++++.+....+..+...++|+.+++++|.+.+..+.++..+++|+.|++++|.+....+..+.
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~  174 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR  174 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhc
Confidence            56677889999999999999998766677788889999999999999877778888999999999999999876665554


Q ss_pred             -ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeeccc
Q 040206          232 -NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI  310 (347)
Q Consensus       232 -~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~  310 (347)
                       .++|+.+++++|.+++.             .|.+|..+++|++|++++|.+.+..+..+..+++|+.|++++|++.++.
T Consensus       175 ~l~~L~~l~l~~N~l~~i-------------~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVAHV-------------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             TCTTCCEEECCSSCCCEE-------------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             cccccchhhhhhcccccc-------------ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence             48999999999999964             3457888999999999999999988889999999999999999999875


Q ss_pred             C
Q 040206          311 G  311 (347)
Q Consensus       311 ~  311 (347)
                      +
T Consensus       242 ~  242 (284)
T d1ozna_         242 R  242 (284)
T ss_dssp             G
T ss_pred             c
Confidence            5

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=2.2e-22  Score=176.20  Aligned_cols=275  Identities=24%  Similarity=0.252  Sum_probs=204.2

Q ss_pred             hhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccC-CCCCCCccEE
Q 040206           19 LRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSL-PDLPPHMVQL   96 (347)
Q Consensus        19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L   96 (347)
                      .+.+.+|++|++++++++ .+ +.+.  .+++|++|++++|.+++++. ..+++|++|++++|++.... ...+++|+.+
T Consensus        40 ~~~l~~l~~L~l~~~~I~-~l-~gl~--~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L  115 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIK-SI-DGVE--YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL  115 (384)
T ss_dssp             HHHHTTCCEEECCSSCCC-CC-TTGG--GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred             HHHhCCCCEEECCCCCCC-Cc-cccc--cCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccccccccccccc
Confidence            456789999999999998 44 3444  34999999999999999975 78899999999999998654 3456899999


Q ss_pred             EcccCcccccCCccccCCCCccEEEcccCccc------------------------------------------ccCCcc
Q 040206           97 LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS------------------------------------------GQIPQC  134 (347)
Q Consensus        97 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------------------------------------------~~~~~~  134 (347)
                      ++.++.+.+..+.  .....+.......+.+.                                          ......
T Consensus       116 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (384)
T d2omza2         116 TLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL  193 (384)
T ss_dssp             ECCSSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence            9999887743322  22233333332222110                                          011112


Q ss_pred             cCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCe
Q 040206          135 LGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSF  214 (347)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  214 (347)
                      ..++.++.++++++.+....+  ....++|+++++++|.++..  ..+..+++|+.+++++|.+.+..  .+..+++|+.
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~  267 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTE  267 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCE
Confidence            234678999999998775433  45567999999999998743  46888999999999999988543  4788999999


Q ss_pred             EEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhcc
Q 040206          215 LDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLL  294 (347)
Q Consensus       215 L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~  294 (347)
                      ++++++.+.+.. .....+.++.++++.|.+.+              + ..+..+++++.+++++|++.+..+  +..++
T Consensus       268 L~l~~~~l~~~~-~~~~~~~l~~l~~~~n~l~~--------------~-~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~  329 (384)
T d2omza2         268 LKLGANQISNIS-PLAGLTALTNLELNENQLED--------------I-SPISNLKNLTYLTLYFNNISDISP--VSSLT  329 (384)
T ss_dssp             EECCSSCCCCCG-GGTTCTTCSEEECCSSCCSC--------------C-GGGGGCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred             eeccCcccCCCC-cccccccccccccccccccc--------------c-cccchhcccCeEECCCCCCCCCcc--cccCC
Confidence            999999987543 34455789999999999884              2 236778899999999999987543  78999


Q ss_pred             CCCEEEcccceeecccCCccccceeeeeeEe
Q 040206          295 QLQVLILRSNRFWGPIGKLRSRWSGHFIVRT  325 (347)
Q Consensus       295 ~L~~l~L~~n~~~~~~~~~~~~~~~~~~~~~  325 (347)
                      +|++|++++|++++ ++ .+...+.+..+..
T Consensus       330 ~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l  358 (384)
T d2omza2         330 KLQRLFFANNKVSD-VS-SLANLTNINWLSA  358 (384)
T ss_dssp             TCCEEECCSSCCCC-CG-GGGGCTTCCEEEC
T ss_pred             CCCEEECCCCCCCC-Ch-hHcCCCCCCEEEC
Confidence            99999999999876 33 4555555555444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.9e-22  Score=167.99  Aligned_cols=216  Identities=23%  Similarity=0.235  Sum_probs=124.5

Q ss_pred             EEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCC---CCCCcEEEccC-
Q 040206            4 KTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP---WKNLQYLTLDS-   79 (347)
Q Consensus         4 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~---~~~L~~L~l~~-   79 (347)
                      .++.++++++.+|..+.  +++++|+|++|+++ .+++..+. ++++|++|+++++.+..+....   +..++.+.... 
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~-~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRIS-HVPAASFR-ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCC-EECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCC-CCCHHHhh-ccccccccccccccccccccccccccccccccccccc
Confidence            45666777778886554  56788888888887 45543333 4488888888888777766633   34555655433 


Q ss_pred             CCCCccCCC---CCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccC
Q 040206           80 NLLQGSLPD---LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIP  155 (347)
Q Consensus        80 ~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~  155 (347)
                      +.+....+.   .+++|++|++++|.+....+..+....+|+.+++.+|.++...+..+ ..++|+.|++++|.+....+
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            233322222   12555666666665554444455555556666666665554444433 33455566666655554444


Q ss_pred             ccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206          156 QTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       156 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                      ..+..+++|+.+++++|.++...+..|..+++|++|++++|.+.+..+.++..+++|+.+++++|++.
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            55555555666666655555455555555555666666665555544455555555666555555544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.8e-21  Score=157.91  Aligned_cols=200  Identities=24%  Similarity=0.167  Sum_probs=115.9

Q ss_pred             CCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCcc
Q 040206           71 NLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNF  150 (347)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  150 (347)
                      .+.+++.++++++..+...++++++|++++|.++.+.+..|.++++|++|++++|.++... ....+++|++|++++|.+
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~Ls~N~l   89 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQL   89 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSCC
T ss_pred             CCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc-cccccccccccccccccc
Confidence            4445566666666555555567777777777777665667788888888888888776432 223445666666666655


Q ss_pred             ccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccc
Q 040206          151 QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL  230 (347)
Q Consensus       151 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  230 (347)
                      . ..+..+..+++|+.++++++.+....+..+..+.+++.|++++|.+....+..+..+++                   
T Consensus        90 ~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~-------------------  149 (266)
T d1p9ag_          90 Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-------------------  149 (266)
T ss_dssp             S-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-------------------
T ss_pred             c-ccccccccccccccccccccccceeeccccccccccccccccccccceecccccccccc-------------------
Confidence            4 33444455555555555555554444444444555555555555544333334444444                   


Q ss_pred             cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecc
Q 040206          231 ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP  309 (347)
Q Consensus       231 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~  309 (347)
                          ++.+++++|.+++.             .+..+..+++|++|+|++|+++. ++..+..+++|+.|+|++||+..+
T Consensus       150 ----l~~l~l~~N~l~~~-------------~~~~~~~l~~L~~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         150 ----LEKLSLANNNLTEL-------------PAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             ----CCEEECTTSCCSCC-------------CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ----chhccccccccccc-------------CccccccccccceeecccCCCcc-cChhHCCCCCCCEEEecCCCCCCC
Confidence                45555555555421             12235566677777777777664 444445667777777777776643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.9e-21  Score=157.83  Aligned_cols=194  Identities=25%  Similarity=0.207  Sum_probs=113.2

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCC
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNL   81 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~   81 (347)
                      .+++.++++++.+|+.+.  +++++|++++|++++..+..+.  ++++|++|++++|.++.++. ..+++|++|++++|+
T Consensus        13 ~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~   88 (266)
T d1p9ag_          13 LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ   88 (266)
T ss_dssp             CEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSC
T ss_pred             eEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhh--cccccccccccccccccccccccccccccccccccc
Confidence            345666666666665443  4667777777776633233333  33666777666666655443 334445555444444


Q ss_pred             CCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccCccCCC
Q 040206           82 LQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAK  160 (347)
Q Consensus        82 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~  160 (347)
                      +.                      ..+..+..+++|+.|+++++.+.......+ ...+++.+++++|.+....+..+..
T Consensus        89 l~----------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~  146 (266)
T d1p9ag_          89 LQ----------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP  146 (266)
T ss_dssp             CS----------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             cc----------------------ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccc
Confidence            43                      334455566666666666666654444333 3345666666666665444555556


Q ss_pred             CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206          161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                      ++.++.+++++|+++...+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++.
T Consensus       147 l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            666666666666666555555666667777777776666 45555556666666666666543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=7.3e-17  Score=138.78  Aligned_cols=269  Identities=24%  Similarity=0.282  Sum_probs=130.4

Q ss_pred             ceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCCC
Q 040206            2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNL   81 (347)
Q Consensus         2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~   81 (347)
                      ++.|+|++++++.+|+.   .++|++|++++|+++ .+|..+     .+|+.|++++|.++.++.. .+.|++|++++|.
T Consensus        40 l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~-~lp~~~-----~~L~~L~l~~n~l~~l~~l-p~~L~~L~L~~n~  109 (353)
T d1jl5a_          40 AHELELNNLGLSSLPEL---PPHLESLVASCNSLT-ELPELP-----QSLKSLLVDNNNLKALSDL-PPLLEYLGVSNNQ  109 (353)
T ss_dssp             CSEEECTTSCCSCCCSC---CTTCSEEECCSSCCS-SCCCCC-----TTCCEEECCSSCCSCCCSC-CTTCCEEECCSSC
T ss_pred             CCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCc-ccccch-----hhhhhhhhhhcccchhhhh-ccccccccccccc
Confidence            45667777766666642   356667777766666 555432     5566666666666655432 1356666666666


Q ss_pred             CCccCC-CCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCcccc--------
Q 040206           82 LQGSLP-DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQG--------  152 (347)
Q Consensus        82 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--------  152 (347)
                      +..... ..+++|++|+++++.+.... .   ....+..+.+..+.... .........++.+.+.++....        
T Consensus       110 l~~lp~~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~~-~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~  184 (353)
T d1jl5a_         110 LEKLPELQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKKLPDLPLSL  184 (353)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             cccccchhhhccceeeccccccccccc-c---ccccccchhhccccccc-cccccccccceecccccccccccccccccc
Confidence            654322 12356666666666554211 1   11223333333222211 1111122334444444433211        


Q ss_pred             ----------ccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCcc
Q 040206          153 ----------SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSL  222 (347)
Q Consensus       153 ----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~  222 (347)
                                ........++.++.++++++.... .+   ....++..+.+..+.+... +.   ....+....+..+.+
T Consensus       185 ~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~  256 (353)
T d1jl5a_         185 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIF  256 (353)
T ss_dssp             CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCC
T ss_pred             cccccccccccccccccccccccccccccccccc-cc---ccccccccccccccccccc-cc---ccccccccccccccc
Confidence                      011122334555555555554331 11   1223344444444433311 10   111222222222111


Q ss_pred             cc----------------CcCccc-cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCc
Q 040206          223 SG----------------PIPECL-ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT  285 (347)
Q Consensus       223 ~~----------------~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~  285 (347)
                      ..                ...... ..++|++|++++|++.              .+|.   .+++|++|++++|+++..
T Consensus       257 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~--------------~lp~---~~~~L~~L~L~~N~L~~l  319 (353)
T d1jl5a_         257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI--------------ELPA---LPPRLERLIASFNHLAEV  319 (353)
T ss_dssp             SEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS--------------CCCC---CCTTCCEEECCSSCCSCC
T ss_pred             cccccccchhcccccccCccccccccCCCCCEEECCCCccC--------------cccc---ccCCCCEEECCCCcCCcc
Confidence            10                000111 1257888888888877              2442   256788888888888753


Q ss_pred             cchhhhhccCCCEEEcccceeecccCCccc
Q 040206          286 FLYWLDVLLQLQVLILRSNRFWGPIGKLRS  315 (347)
Q Consensus       286 ~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~  315 (347)
                       +.   .+++|++|++++|++. .+|+...
T Consensus       320 -~~---~~~~L~~L~L~~N~L~-~lp~~~~  344 (353)
T d1jl5a_         320 -PE---LPQNLKQLHVEYNPLR-EFPDIPE  344 (353)
T ss_dssp             -CC---CCTTCCEEECCSSCCS-SCCCCCT
T ss_pred             -cc---ccCCCCEEECcCCcCC-CCCcccc
Confidence             32   2457888888888876 4665433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=9.3e-17  Score=129.43  Aligned_cols=199  Identities=21%  Similarity=0.215  Sum_probs=105.4

Q ss_pred             ecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCcc
Q 040206            7 VKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGS   85 (347)
Q Consensus         7 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~   85 (347)
                      ++.+.+..+. .++.+.+|+.|++.+|+++ .++ .+..  +++|++|++++|.++++.. ..+++|+++++++|.++..
T Consensus        26 l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~-~l~-~l~~--l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i  100 (227)
T d1h6ua2          26 AGKSNVTDTV-TQADLDGITTLSAFGTGVT-TIE-GVQY--LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV  100 (227)
T ss_dssp             TTCSSTTSEE-CHHHHHTCCEEECTTSCCC-CCT-TGGG--CTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC
T ss_pred             hCCCCcCCcC-CHHHcCCcCEEECCCCCCC-cch-hHhc--CCCCcEeecCCceeecccccccccccccccccccccccc
Confidence            3334444322 4577889999999999988 453 4544  4999999999998888765 7778888888887776532


Q ss_pred             CCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCcc
Q 040206           86 LPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLT  165 (347)
Q Consensus        86 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  165 (347)
                      .                       .+..+++|+.+.+.++.... .......+.++.+.++++.+..  ...+..+++|+
T Consensus       101 ~-----------------------~l~~l~~L~~l~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~  154 (227)
T d1h6ua2         101 S-----------------------AIAGLQSIKTLDLTSTQITD-VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQ  154 (227)
T ss_dssp             G-----------------------GGTTCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCC
T ss_pred             c-----------------------cccccccccccccccccccc-cchhccccchhhhhchhhhhch--hhhhccccccc
Confidence            1                       23334444444444443331 1112223344444444443321  11233344455


Q ss_pred             EEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcc
Q 040206          166 SLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMR  241 (347)
Q Consensus       166 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~  241 (347)
                      ++++++|.+...  ..++.+++|+.|++++|.+.+.  ..+..+++|++|++++|++++.. .....++|+.|+++
T Consensus       155 ~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         155 YLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEE
T ss_pred             cccccccccccc--hhhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEee
Confidence            555555544322  2244555555555555554422  12445555555555555554322 22223455555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=1.6e-15  Score=130.17  Aligned_cols=267  Identities=27%  Similarity=0.273  Sum_probs=165.0

Q ss_pred             CCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCc
Q 040206           23 HQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNS  102 (347)
Q Consensus        23 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~  102 (347)
                      .+++.|++++++++ .+|+.+     ++|++|++++|.++.++.. +.+|+.|++++|+++.. ...++.|++|++++|.
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~~-----~~L~~L~Ls~N~l~~lp~~-~~~L~~L~l~~n~l~~l-~~lp~~L~~L~L~~n~  109 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPELP-----PHLESLVASCNSLTELPEL-PQSLKSLLVDNNNLKAL-SDLPPLLEYLGVSNNQ  109 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSCC-----TTCSEEECCSSCCSSCCCC-CTTCCEEECCSSCCSCC-CSCCTTCCEEECCSSC
T ss_pred             cCCCEEEeCCCCCC-CCCCCC-----CCCCEEECCCCCCcccccc-hhhhhhhhhhhcccchh-hhhccccccccccccc
Confidence            57999999999998 677543     8899999999999988753 67999999999998744 4566789999999999


Q ss_pred             ccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCcccc
Q 040206          103 LTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL  182 (347)
Q Consensus       103 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  182 (347)
                      +.. .+. ++.+++|+.|++.++.+.....   ....+..+.+..+...  ....+..++.++.+.+.++..... +.  
T Consensus       110 l~~-lp~-~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~-~~--  179 (353)
T d1jl5a_         110 LEK-LPE-LQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKL-PD--  179 (353)
T ss_dssp             CSS-CCC-CTTCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC-CC--
T ss_pred             ccc-ccc-hhhhccceeecccccccccccc---ccccccchhhcccccc--ccccccccccceeccccccccccc-cc--
Confidence            884 443 5789999999999988764332   2345677777666543  344566778888888888765422 11  


Q ss_pred             ccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcc-----------------ccccCCcEEEcccCcc
Q 040206          183 INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPEC-----------------LANSTLEILDMRMNKF  245 (347)
Q Consensus       183 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----------------~~~~~L~~L~L~~~~~  245 (347)
                       .....+.+....+.+. .. ..+..++.|+.+++.+|.........                 .....+...++..+.+
T Consensus       180 -~~~~~~~l~~~~~~~~-~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  256 (353)
T d1jl5a_         180 -LPLSLESIVAGNNILE-EL-PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF  256 (353)
T ss_dssp             -CCTTCCEEECCSSCCS-SC-CCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred             -cccccccccccccccc-cc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             1112233333333222 11 12334444555555444332111000                 0012333334333322


Q ss_pred             ccc--CChhh-hccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccc
Q 040206          246 SGS--LPQNI-CKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRS  315 (347)
Q Consensus       246 ~~~--~~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~  315 (347)
                      .+.  .+... ........++.....+++|++|++++|++... +.   .+++|+.|+|++|.++ .+|....
T Consensus       257 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~L~-~l~~~~~  324 (353)
T d1jl5a_         257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLA-EVPELPQ  324 (353)
T ss_dssp             SEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCCCCCT
T ss_pred             cccccccchhcccccccCccccccccCCCCCEEECCCCccCcc-cc---ccCCCCEEECCCCcCC-ccccccC
Confidence            210  00000 00011122333344578999999999999864 32   4679999999999987 4665433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.4e-16  Score=128.34  Aligned_cols=204  Identities=20%  Similarity=0.206  Sum_probs=122.0

Q ss_pred             cEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCccccc
Q 040206           52 QFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQ  130 (347)
Q Consensus        52 ~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  130 (347)
                      ..+++..+.+++... ..+.+|+.|++.+|.+...                       ..+..+++|++|++++|.+...
T Consensus        22 ~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l-----------------------~~l~~l~~L~~L~ls~n~i~~~   78 (227)
T d1h6ua2          22 IKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI-----------------------EGVQYLNNLIGLELKDNQITDL   78 (227)
T ss_dssp             HHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCC-----------------------TTGGGCTTCCEEECCSSCCCCC
T ss_pred             HHHHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcc-----------------------hhHhcCCCCcEeecCCceeecc
Confidence            334454454444332 3345566666665555422                       2345566666666666655533


Q ss_pred             CCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCC
Q 040206          131 IPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNST  210 (347)
Q Consensus       131 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~  210 (347)
                      . ....++.++.+++++|.+.. . ..+..+++|+++.++++.....  ..+...+.++.+.++.+.+...  ..+..++
T Consensus        79 ~-~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~  151 (227)
T d1h6ua2          79 A-PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLT  151 (227)
T ss_dssp             G-GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred             c-cccccccccccccccccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhcccc
Confidence            2 23344566666666655432 1 2345566777777766655422  3455566777777777666532  3355667


Q ss_pred             CCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhh
Q 040206          211 RLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWL  290 (347)
Q Consensus       211 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~  290 (347)
                      +|+.|++.+|.+.+.. .....++|+.|++++|.+++              ++ .++++++|++|++++|++++..+  +
T Consensus       152 ~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~~--------------l~-~l~~l~~L~~L~Ls~N~lt~i~~--l  213 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISD--------------IS-PLASLPNLIEVHLKNNQISDVSP--L  213 (227)
T ss_dssp             TCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC--------------CG-GGGGCTTCCEEECTTSCCCBCGG--G
T ss_pred             ccccccccccccccch-hhcccccceecccCCCccCC--------------Ch-hhcCCCCCCEEECcCCcCCCCcc--c
Confidence            7777777777665332 23334678888888877763              22 26778888888888888876543  6


Q ss_pred             hhccCCCEEEccc
Q 040206          291 DVLLQLQVLILRS  303 (347)
Q Consensus       291 ~~l~~L~~l~L~~  303 (347)
                      ..+++|+.|++++
T Consensus       214 ~~l~~L~~L~lsn  226 (227)
T d1h6ua2         214 ANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCTTCCEEEEEE
T ss_pred             ccCCCCCEEEeeC
Confidence            7888888888863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.6e-17  Score=134.16  Aligned_cols=216  Identities=15%  Similarity=0.133  Sum_probs=126.6

Q ss_pred             cEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCC-ccc-CCccccEEECCC-Cc
Q 040206           73 QYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP-QCL-GNSTLETLDLGM-NN  149 (347)
Q Consensus        73 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~-~~  149 (347)
                      +.++.++..++..+...++++++|++++|.++.+.+..|.++++|++|++++|.+....+ ..+ ..+.++++.+.. +.
T Consensus        11 ~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~   90 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   90 (242)
T ss_dssp             SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTT
T ss_pred             CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccc
Confidence            455555555555555555667777777777765555567788888888888887654332 222 455677766543 44


Q ss_pred             cccccCccCCCCCCccEEEccCCcccCCCcc-ccccCCCCcEEEccCCcccCCCCccccCCC-CCCeEEecCCccccCcC
Q 040206          150 FQGSIPQTNAKGCNLTSLRLSGNHLEGPLPP-SLINCVNLQFLDVGNNNLSGPIPECLGNST-RLSFLDVGNNSLSGPIP  227 (347)
Q Consensus       150 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~  227 (347)
                      +....+..+..+++|+++++.++.+....+. .+..+..+..+...++.+....+..+..++ .+..+++.+|.++....
T Consensus        91 l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~  170 (242)
T d1xwdc1          91 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN  170 (242)
T ss_dssp             CCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred             ccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            5545556677777788888877776533221 222334444444555555544444454443 56667777777665555


Q ss_pred             ccccccCCcEE-EcccCcccccCChhhhccccccCCCc-CccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcc
Q 040206          228 ECLANSTLEIL-DMRMNKFSGSLPQNICKKLCFGPLPP-SLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILR  302 (347)
Q Consensus       228 ~~~~~~~L~~L-~L~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~  302 (347)
                      ..+...++..+ ++++|.++              .+|. .|.++++|++|++++|+++..++..+..++.|+.+++.
T Consensus       171 ~~~~~~~l~~~~~l~~n~l~--------------~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         171 CAFNGTQLDELNLSDNNNLE--------------ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             TTTTTCCEEEEECTTCTTCC--------------CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccccchhhhccccccccccc--------------cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            44444554444 34555665              2332 35667777777777777766555555555555555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-18  Score=155.68  Aligned_cols=302  Identities=20%  Similarity=0.159  Sum_probs=186.1

Q ss_pred             CceEEEecCCCCC--CCChhhhcCCCccEEeccCCcccccCChhhhh--cCCCcccEEEcCCCcCCCCCC--------CC
Q 040206            1 KTIKTQVKTCNIS--EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWD--IGVHTLQFLILSQNVLTSIDH--------LP   68 (347)
Q Consensus         1 ~l~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~--------~~   68 (347)
                      +|+.||+++++++  .+.+.+..++++++|++++|.+++.....+..  ..+++|++|++++|.+++.+.        ..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            4788999999998  44567788899999999999887543332221  145889999999988764321        12


Q ss_pred             CCCCcEEEccCCCCCccC-------CCCCCCccEEEcccCcccccCC---------------------------------
Q 040206           69 WKNLQYLTLDSNLLQGSL-------PDLPPHMVQLLISNNSLTGEIP---------------------------------  108 (347)
Q Consensus        69 ~~~L~~L~l~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~---------------------------------  108 (347)
                      ..+|++|++++|+++...       ....++|++|++++|.+.....                                 
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            247999999999886432       2334789999998887542100                                 


Q ss_pred             ccccCCCCccEEEcccCcccccC-----------C-----------------------cccCCccccEEECCCCcccc--
Q 040206          109 SSFCNLSSIQYLNLSNNSLSGQI-----------P-----------------------QCLGNSTLETLDLGMNNFQG--  152 (347)
Q Consensus       109 ~~~~~l~~L~~L~l~~~~~~~~~-----------~-----------------------~~~~~~~L~~L~l~~~~~~~--  152 (347)
                      ..+.....++.+.++++.+....           .                       .......++.+.+.++....  
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            00111234555555443321000           0                       00011345556666554321  


Q ss_pred             ---ccCccCCCCCCccEEEccCCcccCC----CccccccCCCCcEEEccCCcccCCCCc----cc-cCCCCCCeEEecCC
Q 040206          153 ---SIPQTNAKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDVGNNNLSGPIPE----CL-GNSTRLSFLDVGNN  220 (347)
Q Consensus       153 ---~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~----~l-~~~~~L~~L~l~~~  220 (347)
                         ...........++.+++++|.+...    ....+...+.++.+++++|.+.+....    .+ .....|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               1223344456788888888776522    222345577888888888877532111    11 23457889999888


Q ss_pred             ccccCcCcccc-----ccCCcEEEcccCcccccCChhhhccccccCCCcCcc-CCCCCcEEEccCCccCCcc----chhh
Q 040206          221 SLSGPIPECLA-----NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLV-NCQYLEVLDVGNNQIDDTF----LYWL  290 (347)
Q Consensus       221 ~~~~~~~~~~~-----~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~n~i~~~~----~~~~  290 (347)
                      .++......+.     .++|++|+|++|.+.+.+...+++         .+. ..+.|++|+|++|.+++..    ...+
T Consensus       323 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~---------~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  393 (460)
T d1z7xw1         323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ---------GLGQPGSVLRVLWLADCDVSDSSCSSLAATL  393 (460)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH---------HHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred             chhhhhhhhcccccccccchhhhheeeecccCcccchhhh---------hhhcccCCCCEEECCCCCCChHHHHHHHHHH
Confidence            87755443332     157999999999887654333221         222 3567999999999987633    3345


Q ss_pred             hhccCCCEEEcccceeecccC
Q 040206          291 DVLLQLQVLILRSNRFWGPIG  311 (347)
Q Consensus       291 ~~l~~L~~l~L~~n~~~~~~~  311 (347)
                      ..+++|++|+|++|++++...
T Consensus       394 ~~~~~L~~L~Ls~N~i~~~g~  414 (460)
T d1z7xw1         394 LANHSLRELDLSNNCLGDAGI  414 (460)
T ss_dssp             HHCCCCCEEECCSSSCCHHHH
T ss_pred             hcCCCCCEEECCCCcCCHHHH
Confidence            667899999999999876533

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=7.8e-16  Score=122.21  Aligned_cols=165  Identities=24%  Similarity=0.307  Sum_probs=107.0

Q ss_pred             hcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCCCCCCCccEEEc
Q 040206           20 RTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLI   98 (347)
Q Consensus        20 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l   98 (347)
                      ..+.+|+.|++++|.+.+ ++ .+.  .+++|++|++++|.+++++. ..+++|++|++++|+++..             
T Consensus        43 ~~L~~L~~L~l~~~~i~~-l~-~l~--~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l-------------  105 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKS-VQ-GIQ--YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL-------------  105 (210)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGG--GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG-------------
T ss_pred             HHhcCccEEECcCCCCCC-ch-hHh--hCCCCCEEeCCCccccCccccccCcccccccccccccccc-------------
Confidence            457789999999998874 33 243  45999999999999888765 5667788888777776532             


Q ss_pred             ccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCC
Q 040206           99 SNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPL  178 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  178 (347)
                               + .+..+++|+.|++.+|.+.. .+....++.++.+++++|.+..  +..+..+++|+.+++++|+++.. 
T Consensus       106 ---------~-~l~~l~~L~~L~l~~~~~~~-~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-  171 (210)
T d1h6ta2         106 ---------S-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-  171 (210)
T ss_dssp             ---------G-GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-
T ss_pred             ---------c-cccccccccccccccccccc-cccccccccccccccccccccc--ccccccccccccccccccccccc-
Confidence                     1 24455556666665555542 2233344556666666665532  23344566777777777776532 


Q ss_pred             ccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEec
Q 040206          179 PPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVG  218 (347)
Q Consensus       179 ~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  218 (347)
                       ..+..+++|++|++++|.+.+ ++ .+..+++|++|+++
T Consensus       172 -~~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         172 -VPLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             -ccccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence             236677777777777777763 22 46777777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=9.2e-16  Score=121.80  Aligned_cols=165  Identities=27%  Similarity=0.241  Sum_probs=108.8

Q ss_pred             CCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEc
Q 040206          114 LSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDV  193 (347)
Q Consensus       114 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  193 (347)
                      +.+|+.|++.++.+... ...-.+++|++|++++|.+.+. + .+..+++|++|++++|+++. .+ .+..+++|+.|++
T Consensus        45 L~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCCc-hhHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            44556666666655532 2223455666666666665532 2 24566777777777777663 22 4667777888888


Q ss_pred             cCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCc
Q 040206          194 GNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLE  273 (347)
Q Consensus       194 ~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~  273 (347)
                      ++|.+..  ...+..++.++.+++++|.+++ .......++|+.+++++|.+++              ++ .+..+++|+
T Consensus       120 ~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~-~~~~~~l~~L~~l~l~~n~l~~--------------i~-~l~~l~~L~  181 (210)
T d1h6ta2         120 EHNGISD--INGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISD--------------IV-PLAGLTKLQ  181 (210)
T ss_dssp             TTSCCCC--CGGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCC--------------CG-GGTTCTTCC
T ss_pred             ccccccc--cccccccccccccccccccccc-cccccccccccccccccccccc--------------cc-cccCCCCCC
Confidence            7777653  2356677778888887777763 2233344778888888888773              22 267788899


Q ss_pred             EEEccCCccCCccchhhhhccCCCEEEccc
Q 040206          274 VLDVGNNQIDDTFLYWLDVLLQLQVLILRS  303 (347)
Q Consensus       274 ~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~  303 (347)
                      +|++++|.+++. + .+..+++|++|+|++
T Consensus       182 ~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         182 NLYLSKNHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             EEECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence            999999988764 2 478889999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9.1e-19  Score=156.27  Aligned_cols=307  Identities=22%  Similarity=0.206  Sum_probs=203.8

Q ss_pred             CceEEEecCCCCC-----CCChhhhcCCCccEEeccCCcccccCChhhhhc---CCCcccEEEcCCCcCCCCCC------
Q 040206            1 KTIKTQVKTCNIS-----EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDI---GVHTLQFLILSQNVLTSIDH------   66 (347)
Q Consensus         1 ~l~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~l~~~~~------   66 (347)
                      +++.|+|++|+++     .++.++..+++|+.|++++|++++.....+...   ...+|++|++++|.+++...      
T Consensus        28 ~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~  107 (460)
T d1z7xw1          28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST  107 (460)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccch
Confidence            4688999999988     456678899999999999999875433344331   22579999999999887542      


Q ss_pred             -CCCCCCcEEEccCCCCCcc----------------------CCCC--------------CCCccEEEcccCccccc---
Q 040206           67 -LPWKNLQYLTLDSNLLQGS----------------------LPDL--------------PPHMVQLLISNNSLTGE---  106 (347)
Q Consensus        67 -~~~~~L~~L~l~~~~~~~~----------------------~~~~--------------~~~L~~L~l~~~~~~~~---  106 (347)
                       ..+++|++|++++|.++..                      ....              ...++.+.++++.....   
T Consensus       108 l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~  187 (460)
T d1z7xw1         108 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR  187 (460)
T ss_dssp             TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             hhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence             4678999999999876410                      0000              03455566554432200   


Q ss_pred             ------------------------------CCccccCCCCccEEEcccCccccc-----CCcc-cCCccccEEECCCCcc
Q 040206          107 ------------------------------IPSSFCNLSSIQYLNLSNNSLSGQ-----IPQC-LGNSTLETLDLGMNNF  150 (347)
Q Consensus       107 ------------------------------~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~  150 (347)
                                                    ....+...+.++.+.+.++.+...     .... .....++.+++++|.+
T Consensus       188 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i  267 (460)
T d1z7xw1         188 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI  267 (460)
T ss_dssp             HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccc
Confidence                                          001122346677777777655321     1111 1235799999999876


Q ss_pred             ccc----cCccCCCCCCccEEEccCCcccCCCcccc-----ccCCCCcEEEccCCcccCCCC----ccccCCCCCCeEEe
Q 040206          151 QGS----IPQTNAKGCNLTSLRLSGNHLEGPLPPSL-----INCVNLQFLDVGNNNLSGPIP----ECLGNSTRLSFLDV  217 (347)
Q Consensus       151 ~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l  217 (347)
                      ...    ....+...+.++.++++++.++......+     .....|+.++++++.+.....    ..+...++|++|++
T Consensus       268 ~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~L  347 (460)
T d1z7xw1         268 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI  347 (460)
T ss_dssp             CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred             cccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhhe
Confidence            422    12234456789999999998763322222     234689999999998864332    33456779999999


Q ss_pred             cCCccccCcCccc------cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhh
Q 040206          218 GNNSLSGPIPECL------ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLD  291 (347)
Q Consensus       218 ~~~~~~~~~~~~~------~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~  291 (347)
                      ++|.+.+.+...+      ..+.|+.|+|++|.+++.....         ++..+..+++|++|++++|.+++.....+.
T Consensus       348 s~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~---------l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~  418 (460)
T d1z7xw1         348 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS---------LAATLLANHSLRELDLSNNCLGDAGILQLV  418 (460)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH---------HHHHHHHCCCCCEEECCSSSCCHHHHHHHH
T ss_pred             eeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHH---------HHHHHhcCCCCCEEECCCCcCCHHHHHHHH
Confidence            9999875433222      1357999999999998653332         333567789999999999999865444332


Q ss_pred             -----hccCCCEEEcccceeecccCCcccc
Q 040206          292 -----VLLQLQVLILRSNRFWGPIGKLRSR  316 (347)
Q Consensus       292 -----~l~~L~~l~L~~n~~~~~~~~~~~~  316 (347)
                           ....|+.|++.+|.+.++....+..
T Consensus       419 ~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~  448 (460)
T d1z7xw1         419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQA  448 (460)
T ss_dssp             HHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred             HHHHhCCCccCEEECCCCCCCHHHHHHHHH
Confidence                 2347999999999998765554433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.8e-15  Score=119.02  Aligned_cols=161  Identities=23%  Similarity=0.282  Sum_probs=87.5

Q ss_pred             CCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEc
Q 040206          114 LSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDV  193 (347)
Q Consensus       114 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  193 (347)
                      ++++++|++.++.+... ...-.+++|++|++++|.+....  .+..+++|+++++++|.+...  ..+..++.|+.+++
T Consensus        39 l~~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEEC
T ss_pred             hcCCCEEECCCCCCCCc-cccccCCCcCcCccccccccCcc--cccCCcccccccccccccccc--cccccccccccccc
Confidence            44555555555555432 22223445555555555554222  245556666666666655422  23556666666666


Q ss_pred             cCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCc
Q 040206          194 GNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLE  273 (347)
Q Consensus       194 ~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~  273 (347)
                      +++.....  ..+..+++|+.+++++|.+.. .+.....++++.|++.+|++++              ++ .++++++|+
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~--------------l~-~l~~l~~L~  175 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSNQVTD--------------LK-PLANLTTLE  175 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCC--------------CG-GGTTCTTCC
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhcc-cccccccccccccccccccccC--------------Cc-cccCCCCCC
Confidence            66655422  235556666666666666552 2233334566666666666652              22 255667777


Q ss_pred             EEEccCCccCCccchhhhhccCCCEE
Q 040206          274 VLDVGNNQIDDTFLYWLDVLLQLQVL  299 (347)
Q Consensus       274 ~L~L~~n~i~~~~~~~~~~l~~L~~l  299 (347)
                      +|++++|++++..  .++.+++|++|
T Consensus       176 ~L~ls~N~i~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         176 RLDISSNKVSDIS--VLAKLTNLESL  199 (199)
T ss_dssp             EEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred             EEECCCCCCCCCc--cccCCCCCCcC
Confidence            7777777776532  35666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=2.3e-15  Score=118.41  Aligned_cols=173  Identities=23%  Similarity=0.254  Sum_probs=112.1

Q ss_pred             cCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccC
Q 040206            8 KTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSL   86 (347)
Q Consensus         8 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~   86 (347)
                      +.+.++..+ ....+++++.|+++++++. .+. .+.  .+++|++|++++|.+++++. ..+++|++|++++|.+... 
T Consensus        26 ~~~~~~~~~-~~~~l~~l~~L~l~~~~i~-~l~-~l~--~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~-   99 (199)
T d2omxa2          26 GKTNVTDTV-SQTDLDQVTTLQADRLGIK-SID-GVE--YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-   99 (199)
T ss_dssp             TCSSTTSEE-CHHHHTTCCEEECTTSCCC-CCT-TGG--GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-
T ss_pred             CCCCCCCcc-CHHHhcCCCEEECCCCCCC-Ccc-ccc--cCCCcCcCccccccccCcccccCCcccccccccccccccc-
Confidence            344444332 2456889999999999988 443 343  34999999999999988765 6677888888877766532 


Q ss_pred             CCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccE
Q 040206           87 PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTS  166 (347)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  166 (347)
                                           + .+..+++|+.++++++..... .....+++|+.+++++|.+. .. ..+..++++++
T Consensus       100 ---------------------~-~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~  154 (199)
T d2omxa2         100 ---------------------T-PLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQ  154 (199)
T ss_dssp             ---------------------G-GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSE
T ss_pred             ---------------------c-ccccccccccccccccccccc-cccchhhhhHHhhhhhhhhc-cc-ccccccccccc
Confidence                                 1 245556666666666555432 22334556666666666654 22 34556677777


Q ss_pred             EEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeE
Q 040206          167 LRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFL  215 (347)
Q Consensus       167 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  215 (347)
                      +++.+|.++..  ..++.+++|++|++++|.+++.  ..+..+++|++|
T Consensus       155 L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         155 LNFSSNQVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             cccccccccCC--ccccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            77777776633  3467777778888877777642  246667777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.9e-15  Score=122.91  Aligned_cols=207  Identities=20%  Similarity=0.169  Sum_probs=95.7

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCC-CCC---CCCCCCcEEEcc
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS-IDH---LPWKNLQYLTLD   78 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~---~~~~~L~~L~l~   78 (347)
                      +.++.++.+++.+|+.+.  +++++|++++|+++ .++...+. ++++|++|++++|.+.. ++.   ..+++++++.+.
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~-~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLR-VIQKGAFS-GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCC-EECTTTTT-TCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCC-ccChhHhh-ccchhhhhhhccccccceeecccccccccccccccc
Confidence            356666777777776443  46778888877776 45443333 44777777777776554 233   234556666554


Q ss_pred             C-CCCCccCCCC---CCCccEEEcccCcccccCC-ccccCCCCccEEEcccCcccccCCccc-CCc-cccEEECCCCccc
Q 040206           79 S-NLLQGSLPDL---PPHMVQLLISNNSLTGEIP-SSFCNLSSIQYLNLSNNSLSGQIPQCL-GNS-TLETLDLGMNNFQ  151 (347)
Q Consensus        79 ~-~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~-~L~~L~l~~~~~~  151 (347)
                      . +.+.......   +++|+++++.++.+....+ ..+..+..+..+...++.+.......+ +.+ .++.+++.++.+.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            3 3333322222   2455555555555442211 112223333333333333333322222 111 3444555555444


Q ss_pred             cccCccCCCCCCccEEE-ccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCe
Q 040206          152 GSIPQTNAKGCNLTSLR-LSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSF  214 (347)
Q Consensus       152 ~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  214 (347)
                      ...+. ....+++.++. ++++.++...+..|..+++|+.|++++|++....+..+..+++|+.
T Consensus       167 ~i~~~-~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         167 EIHNC-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             EECTT-TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred             ccccc-cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccccc
Confidence            22222 22233333332 3334444332333444555555555555544333333333333333

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=8.6e-16  Score=120.22  Aligned_cols=127  Identities=21%  Similarity=0.330  Sum_probs=68.6

Q ss_pred             EEEccCCCCCccCCCCCCCccEEEcccCcccc-cCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCcccc
Q 040206           74 YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTG-EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQG  152 (347)
Q Consensus        74 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  152 (347)
                      .++.++++++..+...++++++|++++|.++. .....|..+++|+.|++++|.+...                      
T Consensus        12 ~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~----------------------   69 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI----------------------   69 (192)
T ss_dssp             EEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB----------------------
T ss_pred             EEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc----------------------
Confidence            44555555554444444455555555555542 2334455566666666665555443                      


Q ss_pred             ccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206          153 SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       153 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~  223 (347)
                       .+..+..++.|++|++++|++....+.+|.++++|++|++++|.+....+.+|..+++|+++++++|.+.
T Consensus        70 -~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          70 -EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             -CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             -cccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence             3344444455555555555555444445555666666666666665555555666666666666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=3.2e-15  Score=116.89  Aligned_cols=123  Identities=22%  Similarity=0.266  Sum_probs=79.3

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccC
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDS   79 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~   79 (347)
                      +.++.++++++.+|+.+.  +++++|++++|+|++.++...+. ++++|++|++++|.+..+..   ..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~-~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFG-RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGG-GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccC-CCceEeeeeccccccccccccccccccccceeeecc
Confidence            456777788888887554  67888888888887555544443 44888888888887777655   3446677777777


Q ss_pred             CCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCccc
Q 040206           80 NLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS  128 (347)
Q Consensus        80 ~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  128 (347)
                      |++....+..   +++|++|++++|.++.+.+.+|..+++|+++++++|.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            7666544333   255566666666666555555555666666666555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.55  E-value=2.2e-16  Score=135.49  Aligned_cols=259  Identities=18%  Similarity=0.205  Sum_probs=139.4

Q ss_pred             CCChhhhcCCCccEEeccCCcccccCChhhhhc--CCCcccEEEcCCCcCCCCCC-------------CCCCCCcEEEcc
Q 040206           14 EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDI--GVHTLQFLILSQNVLTSIDH-------------LPWKNLQYLTLD   78 (347)
Q Consensus        14 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~-------------~~~~~L~~L~l~   78 (347)
                      .+..++.+...|+.|++++|.+.......+...  .+++|+.++++++.......             ..+++|+.|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            566778888999999999988876554444431  23667777776654332211             122344444444


Q ss_pred             CCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccC
Q 040206           79 SNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTN  158 (347)
Q Consensus        79 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  158 (347)
                      +|.++.....                 .+...+...++|+.|++++|.+.......+. ..+..+.         .....
T Consensus       102 ~n~i~~~~~~-----------------~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~-~~l~~~~---------~~~~~  154 (344)
T d2ca6a1         102 DNAFGPTAQE-----------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA-RALQELA---------VNKKA  154 (344)
T ss_dssp             SCCCCTTTHH-----------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHH-HHHHHHH---------HHHHH
T ss_pred             cccccccccc-----------------chhhhhcccccchheeccccccccccccccc-ccccccc---------ccccc
Confidence            4433321000                 1112233345555565555544311100000 0000000         00001


Q ss_pred             CCCCCccEEEccCCcccCC----CccccccCCCCcEEEccCCcccCC-----CCccccCCCCCCeEEecCCccccCcCcc
Q 040206          159 AKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDVGNNNLSGP-----IPECLGNSTRLSFLDVGNNSLSGPIPEC  229 (347)
Q Consensus       159 ~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~  229 (347)
                      ...+.++.+.++++.++..    ....+..++.++.|++++|.+...     +...+..+++|+.|++++|.++......
T Consensus       155 ~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~  234 (344)
T d2ca6a1         155 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA  234 (344)
T ss_dssp             HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred             ccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccc
Confidence            1234556666666655422    122344567778888877776521     2334566778888888887765433221


Q ss_pred             -----ccccCCcEEEcccCcccccCChhhhccccccCCCcCcc--CCCCCcEEEccCCccCCccch----hhh-hccCCC
Q 040206          230 -----LANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLV--NCQYLEVLDVGNNQIDDTFLY----WLD-VLLQLQ  297 (347)
Q Consensus       230 -----~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~L~~L~L~~n~i~~~~~~----~~~-~l~~L~  297 (347)
                           ...++|++|++++|.+++.+...++.         .+.  ..+.|++|++++|.|+.....    .+. .++.|+
T Consensus       235 L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~---------~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~  305 (344)
T d2ca6a1         235 LAIALKSWPNLRELGLNDCLLSARGAAAVVD---------AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL  305 (344)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCHHHHHHHHH---------HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred             ccccccccccchhhhhhcCccCchhhHHHHH---------HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCC
Confidence                 12367888888888887654443322         222  245788999999988753322    232 467899


Q ss_pred             EEEcccceeec
Q 040206          298 VLILRSNRFWG  308 (347)
Q Consensus       298 ~l~L~~n~~~~  308 (347)
                      .|++++|++..
T Consensus       306 ~L~l~~N~~~~  316 (344)
T d2ca6a1         306 FLELNGNRFSE  316 (344)
T ss_dssp             EEECTTSBSCT
T ss_pred             EEECCCCcCCC
Confidence            99999999865

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.5e-15  Score=126.34  Aligned_cols=246  Identities=15%  Similarity=0.148  Sum_probs=117.2

Q ss_pred             cEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEccCCCCCcc----CCCCCCCccEEEcc
Q 040206           26 EWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLDSNLLQGS----LPDLPPHMVQLLIS   99 (347)
Q Consensus        26 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~~~~~~~~----~~~~~~~L~~L~l~   99 (347)
                      +++|++++.+.......+..   ..+..+.+....+.....  ....+|++|+++++.+...    ....+++|++|++.
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~---~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS---QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH---TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh---ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            35566655554333333322   223344444443322211  2334566666665554421    12223455555555


Q ss_pred             cCcccccCCccccCCCCccEEEcccCc-ccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCc-ccCC
Q 040206          100 NNSLTGEIPSSFCNLSSIQYLNLSNNS-LSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNH-LEGP  177 (347)
Q Consensus       100 ~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~  177 (347)
                      ++.+.+.....+..+++|++|++++|. ++...                      .......+++|++|++++|. +++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~----------------------l~~l~~~~~~L~~L~ls~c~~~~~~  137 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA----------------------LQTLLSSCSRLDELNLSWCFDFTEK  137 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH----------------------HHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccc----------------------cchhhHHHHhccccccccccccccc
Confidence            554443333444555555555555532 22100                      01111233455555555542 2211


Q ss_pred             -Cccccc-cCCCCcEEEccCCc--ccC-CCCccccCCCCCCeEEecCCc-cccCcCccc-cccCCcEEEcccC-cccccC
Q 040206          178 -LPPSLI-NCVNLQFLDVGNNN--LSG-PIPECLGNSTRLSFLDVGNNS-LSGPIPECL-ANSTLEILDMRMN-KFSGSL  249 (347)
Q Consensus       178 -~~~~l~-~~~~L~~L~l~~n~--~~~-~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~L~~~-~~~~~~  249 (347)
                       ....+. .++.|+.|+++++.  +.+ .+......+++|++|++++|. +++.....+ ..++|++|++++| .+++..
T Consensus       138 ~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~  217 (284)
T d2astb2         138 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET  217 (284)
T ss_dssp             HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH
Confidence             111122 23566667666542  221 122233456777777777653 443333322 2367777787775 455432


Q ss_pred             ChhhhccccccCCCcCccCCCCCcEEEccCCccCC-ccchhhhhccCCCEEEcccceeecccCCc
Q 040206          250 PQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD-TFLYWLDVLLQLQVLILRSNRFWGPIGKL  313 (347)
Q Consensus       250 ~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~l~L~~n~~~~~~~~~  313 (347)
                      .             ..++++++|+.|++++| +++ ........+|+|+   +..+++++..++.
T Consensus       218 l-------------~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~  265 (284)
T d2astb2         218 L-------------LELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPT  265 (284)
T ss_dssp             G-------------GGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSS
T ss_pred             H-------------HHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCc
Confidence            2             23567889999999998 443 3333345567764   4566666544433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.9e-15  Score=123.82  Aligned_cols=179  Identities=21%  Similarity=0.186  Sum_probs=124.9

Q ss_pred             CCCCccEEEcccCcccccC-Cc-ccCCccccEEECCCCccccccCccCCCCCCccEEEccCC-cccCCC-ccccccCCCC
Q 040206          113 NLSSIQYLNLSNNSLSGQI-PQ-CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGN-HLEGPL-PPSLINCVNL  188 (347)
Q Consensus       113 ~l~~L~~L~l~~~~~~~~~-~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~-~~~l~~~~~L  188 (347)
                      ...+|++|+++++.+.... .. ...+++|++|++++|.+....+..+..+++|++|++++| .+++.. ...+..+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            4567888888887665322 11 224568888888888776556666778889999999987 444221 1224578999


Q ss_pred             cEEEccCCc-ccCC-CCcccc-CCCCCCeEEecCCc--cccCcCccc--cccCCcEEEcccC-cccccCChhhhcccccc
Q 040206          189 QFLDVGNNN-LSGP-IPECLG-NSTRLSFLDVGNNS--LSGPIPECL--ANSTLEILDMRMN-KFSGSLPQNICKKLCFG  260 (347)
Q Consensus       189 ~~L~l~~n~-~~~~-~~~~l~-~~~~L~~L~l~~~~--~~~~~~~~~--~~~~L~~L~L~~~-~~~~~~~~~~~~~~~~~  260 (347)
                      ++|++++|. +.+. ....+. .+++|+.|+++++.  ++......+  ..++|++|++++| .+++..           
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~-----------  192 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-----------  192 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-----------
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchh-----------
Confidence            999999974 4321 122233 35789999999763  333222222  2379999999987 466542           


Q ss_pred             CCCcCccCCCCCcEEEccCC-ccCCccchhhhhccCCCEEEcccc
Q 040206          261 PLPPSLVNCQYLEVLDVGNN-QIDDTFLYWLDVLLQLQVLILRSN  304 (347)
Q Consensus       261 ~l~~~~~~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~l~L~~n  304 (347)
                        ...+.++++|++|++++| .+++.....++.+++|+.|++++|
T Consensus       193 --~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         193 --FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             --GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             --hhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              234678999999999996 677766677889999999999998

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=2.2e-15  Score=129.13  Aligned_cols=231  Identities=18%  Similarity=0.167  Sum_probs=132.9

Q ss_pred             CcccEEEcCCCcCCCCCC-------CCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEE
Q 040206           49 HTLQFLILSQNVLTSIDH-------LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLN  121 (347)
Q Consensus        49 ~~L~~L~l~~~~l~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  121 (347)
                      ..|+.|++++|.+.....       ...++|+.++++++............          + ..+...+...++|+.|+
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~----------~-~~l~~~l~~~~~L~~L~   99 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA----------L-RLLLQALLKCPKLHTVR   99 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHH----------H-HHHHHHHTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchH----------H-HHHHHHHhhCCCccccc
Confidence            677788887776654321       34466666666655443111100000          0 01223344566777777


Q ss_pred             cccCcccccCCccc-----CCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCC
Q 040206          122 LSNNSLSGQIPQCL-----GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNN  196 (347)
Q Consensus       122 l~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n  196 (347)
                      +++|.+.......+     ..++|++|++++|.+.......+..  .+..+         .........+.|+.+++++|
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSS
T ss_pred             ccccccccccccchhhhhcccccchheecccccccccccccccc--ccccc---------ccccccccCcccceeecccc
Confidence            77766543211111     2234555555554432111000000  00000         00011235678999999999


Q ss_pred             cccCC----CCccccCCCCCCeEEecCCccccCcC-----ccc-cccCCcEEEcccCcccccCChhhhccccccCCCcCc
Q 040206          197 NLSGP----IPECLGNSTRLSFLDVGNNSLSGPIP-----ECL-ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSL  266 (347)
Q Consensus       197 ~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~  266 (347)
                      .+...    +...+..++.|+.+++++|.+.....     ..+ ..++|+.|++++|.++..+...         +...+
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~---------L~~~l  239 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA---------LAIAL  239 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH---------HHHHG
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccc---------ccccc
Confidence            87632    23345678899999999998875321     222 2378999999999987654332         33456


Q ss_pred             cCCCCCcEEEccCCccCCccchhhh----h--ccCCCEEEcccceeeccc
Q 040206          267 VNCQYLEVLDVGNNQIDDTFLYWLD----V--LLQLQVLILRSNRFWGPI  310 (347)
Q Consensus       267 ~~~~~L~~L~L~~n~i~~~~~~~~~----~--l~~L~~l~L~~n~~~~~~  310 (347)
                      ..+++|++|++++|.+++.....+.    .  .+.|++|++++|.+....
T Consensus       240 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~  289 (344)
T d2ca6a1         240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA  289 (344)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred             cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHH
Confidence            7889999999999999875444332    2  367999999999987653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.6e-14  Score=106.12  Aligned_cols=132  Identities=18%  Similarity=0.107  Sum_probs=88.9

Q ss_pred             CCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcE
Q 040206          159 AKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEI  237 (347)
Q Consensus       159 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~  237 (347)
                      .+..++++|++++|+++.. +..+..+++|+.|++++|.+...  ..+..+++|++|++++|.++...+..+. .++|+.
T Consensus        15 ~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            3555777777777777733 44556677788888888877633  3467777888888888887765544433 477888


Q ss_pred             EEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCcc---chhhhhccCCCEEEcccceee
Q 040206          238 LDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTF---LYWLDVLLQLQVLILRSNRFW  307 (347)
Q Consensus       238 L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~l~L~~n~~~  307 (347)
                      |++++|.+.+. +.          + ..+..+++|+++++++|.++...   ...+..+|+|+.||  +.+++
T Consensus        92 L~L~~N~i~~~-~~----------l-~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~  150 (162)
T d1a9na_          92 LILTNNSLVEL-GD----------L-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVK  150 (162)
T ss_dssp             EECCSCCCCCG-GG----------G-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECC
T ss_pred             ceecccccccc-cc----------c-cccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC--CCCCC
Confidence            88888877631 10          1 24667888888888888876533   23567788888877  34444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=3.1e-13  Score=97.07  Aligned_cols=78  Identities=27%  Similarity=0.311  Sum_probs=64.7

Q ss_pred             eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCC
Q 040206            3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNL   81 (347)
Q Consensus         3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~   81 (347)
                      |.|++++|+++.++. +.++++|++|++++|+++ .+|..+..+  ++|+.|++++|.++.++. ..+++|++|++++|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l--~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL--RCLEVLQASDNALENVDGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC--TTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccC-cchhhhhhh--hcccccccccccccccCccccccccCeEECCCCc
Confidence            579999999998885 899999999999999998 777777654  999999999999988765 566777777777777


Q ss_pred             CCc
Q 040206           82 LQG   84 (347)
Q Consensus        82 ~~~   84 (347)
                      +..
T Consensus        77 i~~   79 (124)
T d1dcea3          77 LQQ   79 (124)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            663

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=7.3e-13  Score=95.05  Aligned_cols=102  Identities=24%  Similarity=0.289  Sum_probs=51.4

Q ss_pred             EEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcc
Q 040206          166 SLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKF  245 (347)
Q Consensus       166 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~  245 (347)
                      .|++++|.++.. + .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+++. +.....++|+.+++++|++
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-CccccccccCeEECCCCcc
Confidence            455555555522 2 3555566666666666665 3344555566666666666655532 2222334555555555555


Q ss_pred             cccCChhhhccccccCCCcCccCCCCCcEEEccCCccC
Q 040206          246 SGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID  283 (347)
Q Consensus       246 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~  283 (347)
                      .+..            -...+..+++|+.+++++|.+.
T Consensus        78 ~~~~------------~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSA------------AIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSS------------TTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCC------------CchhhcCCCCCCEEECCCCcCC
Confidence            4210            0112445555555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1e-12  Score=99.05  Aligned_cols=110  Identities=15%  Similarity=0.046  Sum_probs=48.5

Q ss_pred             cCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEE
Q 040206          112 CNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFL  191 (347)
Q Consensus       112 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  191 (347)
                      .++..+++|++++|.++........+.+|+.|++++|.+...  ..+..+++|++|++++|.++...+..+..+++|++|
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            344455555555555543322112334455555555554422  124444555555555555443333333445555555


Q ss_pred             EccCCcccCCC-CccccCCCCCCeEEecCCccc
Q 040206          192 DVGNNNLSGPI-PECLGNSTRLSFLDVGNNSLS  223 (347)
Q Consensus       192 ~l~~n~~~~~~-~~~l~~~~~L~~L~l~~~~~~  223 (347)
                      ++++|.+.+.. ...+..+++|+++++++|+++
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             eeccccccccccccccccccccchhhcCCCccc
Confidence            55555444211 123344444444444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=5e-13  Score=104.41  Aligned_cols=117  Identities=23%  Similarity=0.232  Sum_probs=73.0

Q ss_pred             CccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccc
Q 040206          178 LPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKL  257 (347)
Q Consensus       178 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~  257 (347)
                      ++..+..+++|++|++++|.+...  ..+..+++|+.|++++|.++.........++|+.|++++|.++.          
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~----------  107 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS----------  107 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC----------
T ss_pred             hhhHHhcccccceeECcccCCCCc--ccccCCccccChhhcccccccccccccccccccccccccccccc----------
Confidence            345566677777777777776632  24666777777777777766432222222567777777777663          


Q ss_pred             cccCCCcCccCCCCCcEEEccCCccCCccc-hhhhhccCCCEEEcccceeecccC
Q 040206          258 CFGPLPPSLVNCQYLEVLDVGNNQIDDTFL-YWLDVLLQLQVLILRSNRFWGPIG  311 (347)
Q Consensus       258 ~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~L~~n~~~~~~~  311 (347)
                          ++ .+..+++|++|++++|.+++... ..+..+++|+.|++++|++....+
T Consensus       108 ----l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         108 ----LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             ----HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             ----cc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence                11 24556677777777777765432 456677777777777777765444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=1.5e-13  Score=107.42  Aligned_cols=138  Identities=22%  Similarity=0.143  Sum_probs=101.1

Q ss_pred             cCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccccc
Q 040206          154 IPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANS  233 (347)
Q Consensus       154 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  233 (347)
                      .+..+..+++|++|++++|.++..  ..+..+++|+.|++++|.+.. ++.....+++|+.|++++|.++. .+.....+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~-l~~~~~l~  115 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LSGIEKLV  115 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCC-HHHHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCCc--ccccCCccccChhhccccccc-ccccccccccccccccccccccc-cccccccc
Confidence            344566778899999999988744  358888999999999998873 44445556689999999998874 33344458


Q ss_pred             CCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccch----------hhhhccCCCEEEccc
Q 040206          234 TLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLY----------WLDVLLQLQVLILRS  303 (347)
Q Consensus       234 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~----------~~~~l~~L~~l~L~~  303 (347)
                      +|+.|++++|.+++.. .           ...+..+++|+.|++++|.+....+.          .+..+|+|+.||  +
T Consensus       116 ~L~~L~L~~N~i~~~~-~-----------~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~  181 (198)
T d1m9la_         116 NLRVLYMSNNKITNWG-E-----------IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--G  181 (198)
T ss_dssp             HSSEEEESEEECCCHH-H-----------HHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--S
T ss_pred             cccccccccchhcccc-c-----------cccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--C
Confidence            8999999999987421 0           02467889999999999987543322          256789999887  5


Q ss_pred             ceeecc
Q 040206          304 NRFWGP  309 (347)
Q Consensus       304 n~~~~~  309 (347)
                      .+++..
T Consensus       182 ~~I~~~  187 (198)
T d1m9la_         182 MPVDVD  187 (198)
T ss_dssp             GGGTTT
T ss_pred             ccCCHH
Confidence            666543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.6e-10  Score=86.12  Aligned_cols=103  Identities=20%  Similarity=0.143  Sum_probs=52.0

Q ss_pred             EEECCCCccccccCccCCCCCCccEEEccCC-cccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCC
Q 040206          142 TLDLGMNNFQGSIPQTNAKGCNLTSLRLSGN-HLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNN  220 (347)
Q Consensus       142 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~  220 (347)
                      .++.+++.+. ..|..+..++++++|++.++ .++...+.+|..+++|+.|++++|.+....+.+|..+++|++|++++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3444444443 33444455555555655444 344444445555566666666666555444555555555655555555


Q ss_pred             ccccCcCccccccCCcEEEcccCcc
Q 040206          221 SLSGPIPECLANSTLEILDMRMNKF  245 (347)
Q Consensus       221 ~~~~~~~~~~~~~~L~~L~L~~~~~  245 (347)
                      .++......+...+|+.|+|++|.+
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCcccChhhhccccccccccCCCcc
Confidence            5554333333333344444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.9e-10  Score=84.00  Aligned_cols=106  Identities=21%  Similarity=0.139  Sum_probs=54.9

Q ss_pred             ccEEEccCCcccCCCccccccCCCCcEEEccCC-cccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEccc
Q 040206          164 LTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNN-NLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRM  242 (347)
Q Consensus       164 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~  242 (347)
                      .+.++..++.+. ..+..+..+++|++|++.++ .+....+.+|..+++|+.|++++|.++...+.              
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~--------------   74 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD--------------   74 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT--------------
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccc--------------
Confidence            344555555554 33445555566666666544 35444444555556666666655555533332              


Q ss_pred             CcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceee
Q 040206          243 NKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFW  307 (347)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~  307 (347)
                                            +|..+++|++|+|++|+++......+.. ..|+.|+|++|++.
T Consensus        75 ----------------------~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          75 ----------------------AFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             ----------------------GGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             ----------------------cccccccccceeccCCCCcccChhhhcc-ccccccccCCCccc
Confidence                                  3445555555555555555444444432 24555566655554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.32  E-value=2.1e-07  Score=69.65  Aligned_cols=115  Identities=15%  Similarity=0.163  Sum_probs=75.3

Q ss_pred             cCCCCcEEEccCC-cccC----CCCccccCCCCCCeEEecCCccccCcCcccc-----ccCCcEEEcccCcccccCChhh
Q 040206          184 NCVNLQFLDVGNN-NLSG----PIPECLGNSTRLSFLDVGNNSLSGPIPECLA-----NSTLEILDMRMNKFSGSLPQNI  253 (347)
Q Consensus       184 ~~~~L~~L~l~~n-~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~L~~L~L~~~~~~~~~~~~~  253 (347)
                      ..+.|++|+++++ .+..    .+...+...+.|+.|++++|.+.......++     .+.|++|++++|.+++.+...+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4567778888764 3432    1233456677788888888877643332222     2678888888888887655543


Q ss_pred             hccccccCCCcCccCCCCCcEEEccCCccCCc-------cchhhhhccCCCEEEcccceee
Q 040206          254 CKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT-------FLYWLDVLLQLQVLILRSNRFW  307 (347)
Q Consensus       254 ~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~l~L~~n~~~  307 (347)
                      +         .++...+.|++|++++|.+...       ....+...++|+.|+++.+...
T Consensus        93 ~---------~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~~  144 (167)
T d1pgva_          93 L---------RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  144 (167)
T ss_dssp             H---------HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             H---------HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCch
Confidence            2         3466778899999998865532       2344556788999998776543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=6.1e-08  Score=72.31  Aligned_cols=43  Identities=19%  Similarity=0.166  Sum_probs=22.2

Q ss_pred             ccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206          266 LVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG  308 (347)
Q Consensus       266 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~  308 (347)
                      +..+++|+.|++++|.|++......-....|+.+++++|++..
T Consensus        87 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          87 VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            4455556666666666554333222233445666666666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=3.1e-06  Score=62.72  Aligned_cols=80  Identities=28%  Similarity=0.215  Sum_probs=59.8

Q ss_pred             ChhhhcCCCccEEeccCCcccccCC--hhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCCCCCccCC---
Q 040206           16 PDILRTQHQLEWLDLSKNQIRGRIP--SWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNLLQGSLP---   87 (347)
Q Consensus        16 ~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~~~~~~~---   87 (347)
                      +..+.++++|++|++++|++++.-+  ..+.  .+++|+.|++++|.+++++.   ....+|+.|++++|++.....   
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~--~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQ--KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHH--HSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHh--hCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence            3455689999999999999984322  2233  45999999999999998876   344578999999999875432   


Q ss_pred             -------CCCCCccEEE
Q 040206           88 -------DLPPHMVQLL   97 (347)
Q Consensus        88 -------~~~~~L~~L~   97 (347)
                             ..+|+|+.||
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                   3458888876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.81  E-value=1.9e-06  Score=64.22  Aligned_cols=116  Identities=14%  Similarity=0.123  Sum_probs=63.9

Q ss_pred             CCCccEEEccCC-cccCC----CccccccCCCCcEEEccCCcccC----CCCccccCCCCCCeEEecCCccccCcCcccc
Q 040206          161 GCNLTSLRLSGN-HLEGP----LPPSLINCVNLQFLDVGNNNLSG----PIPECLGNSTRLSFLDVGNNSLSGPIPECLA  231 (347)
Q Consensus       161 ~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  231 (347)
                      .+.|++|+++++ .++..    +..++...+.|++|++++|.+.+    .+...+...+.|+.|++++|.+...+...+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355666666553 23311    22234455667777777776642    2223445566777777777776654332221


Q ss_pred             -----ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCcc
Q 040206          232 -----NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI  282 (347)
Q Consensus       232 -----~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i  282 (347)
                           .+.|++|++++|.+...+....      ..+...+...+.|++|+++.+..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~------~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVE------MDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHH------HHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHH------HHHHHHHHhCCCccEeeCcCCCc
Confidence                 1567777777765543211110      01333566778888898877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.80  E-value=3.8e-06  Score=62.53  Aligned_cols=115  Identities=21%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             ccCCCCcEEEccC-CcccC----CCCccccCCCCCCeEEecCCccccCcCcccc-----ccCCcEEEcccCcccccCChh
Q 040206          183 INCVNLQFLDVGN-NNLSG----PIPECLGNSTRLSFLDVGNNSLSGPIPECLA-----NSTLEILDMRMNKFSGSLPQN  252 (347)
Q Consensus       183 ~~~~~L~~L~l~~-n~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~L~~L~L~~~~~~~~~~~~  252 (347)
                      ...+.|++|++++ +.+..    .+..++...+.|++|++++|.+.......+.     .+.++.+++++|.+.+.+...
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3456677777765 33431    1223445666777777777766543332221     267777777777776554332


Q ss_pred             hhccccccCCCcCccCCCCCcEEEcc--CCccCC----ccchhhhhccCCCEEEccccee
Q 040206          253 ICKKLCFGPLPPSLVNCQYLEVLDVG--NNQIDD----TFLYWLDVLLQLQVLILRSNRF  306 (347)
Q Consensus       253 ~~~~~~~~~l~~~~~~~~~L~~L~L~--~n~i~~----~~~~~~~~l~~L~~l~L~~n~~  306 (347)
                               +...+...++|+.++|+  +|.+.+    .....+...+.|+.|+++.+..
T Consensus        94 ---------l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 ---------LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             ---------HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             ---------HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence                     22356677778875554  456654    2334455678888888876654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.31  E-value=8.5e-06  Score=60.57  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=70.9

Q ss_pred             CCCCCccEEEccCC-cccCC----CccccccCCCCcEEEccCCcccCC----CCccccCCCCCCeEEecCCccccCcCcc
Q 040206          159 AKGCNLTSLRLSGN-HLEGP----LPPSLINCVNLQFLDVGNNNLSGP----IPECLGNSTRLSFLDVGNNSLSGPIPEC  229 (347)
Q Consensus       159 ~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~  229 (347)
                      .+.+.|++|+++++ .++..    +..++...++|++|++++|.+...    +...+...++++.+++++|.+.......
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            34467777777663 44322    223445677888888888877532    2334566778888888888776443221


Q ss_pred             -----ccccCCcEEEcc--cCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCcc
Q 040206          230 -----LANSTLEILDMR--MNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI  282 (347)
Q Consensus       230 -----~~~~~L~~L~L~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i  282 (347)
                           ...+.|+.++|.  +|.+.+.+...         +...+..++.|++|++..+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~---------La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEME---------IANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHH---------HHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHH---------HHHHHHhCCCcCEEeCcCCCC
Confidence                 222677776654  55666543332         333566788999999988754