Citrus Sinensis ID: 040216

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MAGGTDLNVHSVATKAAVDRNQELDKGNHQRPGTDAMLMPPRVAKAVSPVSAADGETLRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDDDELAAAMQNQHYQNSRHHHLDISDLHGLPPQNLLTNGTMPPEIYAWAPGKPMSKT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEEEcccccHHHHHHHHHHHccccEEEEEcccEEEEEEEccccccccEEEEEEEEEEEEEEccccccccccccccEEEEEEcccccEEcEEEcccEEEcccEEEEEEEcccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEcccccccccccccccEEEEEEcccccEEEccEHHHHHccccEEEEEEEccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maggtdlnvHSVATKAAVDrnqeldkgnhqrpgtdamlmpprvakavspvsaadgetlrrprgrpagsknkpkppiivtRDSANALRAHAMEVssgcdvseSLANFARRKQRGIcilsgsgcvtnvtlrqpatsgsivTLHGRFEILSLLgsilpppappgitgLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMnatfdrlplddDELAAAMQNQhyqnsrhhhldisdlhglppqnlltngtmppeiyawapgkpmskt
Flexible Loop (DISEMBL)
maggtdlnvhsVATKaavdrnqeldkgnhqrpgtdamlmppRVAKAvspvsaadgetlrrprgrpagsknkpkppiiVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDDDELAAAMQNQHYQNSRHHHLDISDLHGLPPQNLLTNGTMPPEiyawapgkpmskt
Low Complexity Region (SEG)
MAGGTDLNVHSVATKAAVDRNQELDKGNHQRPGTDAMLMPPRVAKAVSPVSAADGETLRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATSGSIVTLHGRFEilsllgsilpppappgitgltiYLagaqgqvvggvvvgaLIASGPVVIMAASFMNATFDRLPLDDDELAAAMQNQHYQNSRHHHLDISDLHGLPPQNLLTNGTMPPEIYAWAPGKPMSKT
Disordered region (IsUnstruct)
************************************************************************************************CDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSI*********TGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDDD*****************************************IYAW*********
Disordered Region (DISOPRED)
************************************************************************************ALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMN*****************************************************************
Disordered Region (DISEMBL)
MAGGTDLNVHSVATKAAVDRNQELDKGNHQRPGTDAMLMPPRVAKAVSPVSAADGETLR************PKPPIIVTRDSANALRAHA********VSESLANFARRKQRGICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDDDELAAAMQNQHYQNSRHHHLDISDLHGLPPQNLLTNGTMPPEIYAWAPGKPMSKT
Disordered Region (DISPRO)
**********************************************************************KPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLP**********************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGGTDLNVHSVATKAAVDRNQELDKGNHQRPGTDAMLMPPRVAKAVSPVSAADGETLRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDDDELAAAMQNQHYQNSRHHHLDISDLHGLPPQNLLTNGTMPPEIYAWAPGKPMSKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.566	0.482	0.654	1e-38

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/159 (65%), Positives = 125/159 (78%), Gaps = 9/159 (5%)

Query: 59  RRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILS 118
           +RPRGRP GSKNK KPPIIVTRDS NALR+H +EVS G D+ ES++ +ARR+ RG+ +L 
Sbjct: 86  KRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLG 145

Query: 119 GSGCVTNVTLRQPAT---------SGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYL 169
           G+G V+NVTLRQP T          G +VTLHGRFEILSL G++LPPPAPPG  GL+I+L
Sbjct: 146 GNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFL 205

Query: 170 AGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPL 208
           AG QGQVVGG VV  LIAS PV++MAASF NA F+RLP+
Sbjct: 206 AGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFERLPI 244

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
359485201	268	PREDICTED: putative DNA-binding protein	0.988	0.977	0.806	1e-109
224062723	266	predicted protein [Populus trichocarpa]	0.996	0.992	0.786	1e-106
356499354	248	PREDICTED: putative DNA-binding protein	0.932	0.995	0.827	1e-105
356553603	249	PREDICTED: putative DNA-binding protein	0.932	0.991	0.824	1e-105
255572333	279	DNA binding protein, putative [Ricinus c	0.992	0.942	0.780	1e-103
357494309	254	hypothetical protein MTR_5g091630 [Medic	0.932	0.972	0.803	1e-103
224085352	232	predicted protein [Populus trichocarpa]	0.867	0.991	0.823	2e-95
449497591	276	PREDICTED: LOW QUALITY PROTEIN: putative	0.992	0.952	0.719	4e-95
449439125	370	PREDICTED: uncharacterized protein LOC10	0.984	0.705	0.713	3e-94
297827997	260	DNA-binding family protein [Arabidopsis	0.966	0.984	0.685	1e-84

>gi|359485201|ref|XP_002279677.2| PREDICTED: putative DNA-binding protein ESCAROLA-like [Vitis vinifera]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/264 (80%), Positives = 238/264 (90%), Gaps = 2/264 (0%)

Query: 3   GGTDLNVHSVATKAAVDRNQELDKGNHQRPGTDAMLMPPRVAKAVSPVS-AADGETLRRP 61
           GG D  V S+ +K+A+DRNQE  KG++ R G DA+LM P+V KA+  V  A++GE  RRP
Sbjct: 6   GGADPMVPSIGSKSAMDRNQEQVKGSNHRAGIDAILMAPKVPKAMPAVPLASEGEATRRP 65

Query: 62  RGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSG 121
           RGRPAGSKNKPKPPII+TRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSG
Sbjct: 66  RGRPAGSKNKPKPPIIITRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSG 125

Query: 122 CVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVV 181
           CVTNVTLRQPA+SG+IVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGG V
Sbjct: 126 CVTNVTLRQPASSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGGV 185

Query: 182 VGALIASGPVVIMAASFMNATFDRLPLDDDELAAAMQNQHYQNSRHHHLDISDLHGLPPQ 241
           VGALIASGPV +MAASFMNATFDRLPLDDDE+  A+Q+QHYQN RHHH+D+SDL+G+PP 
Sbjct: 186 VGALIASGPVFVMAASFMNATFDRLPLDDDEVTTAVQSQHYQNGRHHHIDMSDLYGIPP- 244

Query: 242 NLLTNGTMPPEIYAWAPGKPMSKT 265
           NLLTNGTM PEIY+WAPG+ +SKT
Sbjct: 245 NLLTNGTMLPEIYSWAPGRTLSKT 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062723|ref|XP_002300879.1| predicted protein [Populus trichocarpa] gi|222842605|gb|EEE80152.1| predicted protein [Populus trichocarpa]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/267 (78%), Positives = 235/267 (88%), Gaps = 3/267 (1%)

Query: 1   MAGGTDLNVHSVATKAAVDRNQELDKGNHQRPGTDAMLMPPRVAKAVSPVSAA-DGETL- 58
           MAG  DL   S+ ++  +DR+Q  +K N+ RP  +A+LM P++ KAV PVS+A DGET+ 
Sbjct: 1   MAGAADLTFPSLGSERIMDRSQGSEKVNNHRPSIEAILMAPKLPKAVPPVSSAPDGETMI 60

Query: 59  RRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILS 118
           RRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDV ESLANFARRKQRGI +LS
Sbjct: 61  RRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVCESLANFARRKQRGISVLS 120

Query: 119 GSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVG 178
           GSGCVTNVTLRQP +SG+IVTLHGRFEILSLLGS+LPPPAP GITGLTIYLAGAQGQVVG
Sbjct: 121 GSGCVTNVTLRQPTSSGAIVTLHGRFEILSLLGSVLPPPAPQGITGLTIYLAGAQGQVVG 180

Query: 179 GVVVGALIASGPVVIMAASFMNATFDRLPLDDDELAAAMQNQHYQNSRHHHLDISDLHGL 238
           G VVGALIASGPVVIMAASFM ATFDRLPLDDDE+ AA+QNQHYQN RHHHLDISDL+G+
Sbjct: 181 GGVVGALIASGPVVIMAASFMKATFDRLPLDDDEITAAVQNQHYQNGRHHHLDISDLYGM 240

Query: 239 PPQNLLTNGTMPPEIYAWAPGKPMSKT 265
            PQNLLTNG + PEIY+W PG+ MSK+
Sbjct: 241 -PQNLLTNGAVTPEIYSWTPGRTMSKS 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499354|ref|XP_003518506.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/249 (82%), Positives = 227/249 (91%), Gaps = 2/249 (0%)

Query: 18  VDRNQELDKGNHQRPGTDAMLMPPRVAKAVSPVS-AADGETLRRPRGRPAGSKNKPKPPI 76
           +DR QE DKGN    GTD  L+ P+V KAVSPVS AA+G+TLRRPRGRPAGSKNKPKPPI
Sbjct: 1   MDRKQEQDKGNSNMSGTDVALISPKVPKAVSPVSSAAEGDTLRRPRGRPAGSKNKPKPPI 60

Query: 77  IVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATSGS 136
           IVTRDSANAL+AHAMEVSSGCDV+ESL+NFARRKQRG+ I +G+GCVTNVTL QP +SG+
Sbjct: 61  IVTRDSANALKAHAMEVSSGCDVNESLSNFARRKQRGLYIFNGTGCVTNVTLCQPGSSGA 120

Query: 137 IVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAA 196
           IVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGG VVGALIASGP+VIMAA
Sbjct: 121 IVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPLVIMAA 180

Query: 197 SFMNATFDRLPLDDDELAAAMQNQHYQNSRHHHLDISDLHGLPPQNLLTNGTMPPEIYAW 256
           SFM+ATFDRLPL+DDELAAAMQNQHYQN R HHLDISDL+ + PQNLL NGTMPPEIY+W
Sbjct: 181 SFMHATFDRLPLEDDELAAAMQNQHYQNGRTHHLDISDLYAM-PQNLLMNGTMPPEIYSW 239

Query: 257 APGKPMSKT 265
           APG+ +SKT
Sbjct: 240 APGQNLSKT 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553603|ref|XP_003545144.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/250 (82%), Positives = 226/250 (90%), Gaps = 3/250 (1%)

Query: 18  VDRNQELDKGNHQRPGTDAMLMPPRVAKAVSPVS--AADGETLRRPRGRPAGSKNKPKPP 75
           +DR QE DKGN    G D  L+ P+V KAVSPVS  AA+G+TLRRPRGRPAGSKNKPKPP
Sbjct: 1   MDRKQEQDKGNSNMSGIDVALISPKVPKAVSPVSSAAAEGDTLRRPRGRPAGSKNKPKPP 60

Query: 76  IIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATSG 135
           IIVTRDSANAL+AHAMEVSSGCDV+ESL NFARRKQRG+ IL+G+GCVTNVTLRQP ++G
Sbjct: 61  IIVTRDSANALKAHAMEVSSGCDVNESLLNFARRKQRGLYILNGTGCVTNVTLRQPGSAG 120

Query: 136 SIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMA 195
           +IVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGG VVGALIASGP+VIMA
Sbjct: 121 AIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPLVIMA 180

Query: 196 ASFMNATFDRLPLDDDELAAAMQNQHYQNSRHHHLDISDLHGLPPQNLLTNGTMPPEIYA 255
           ASFM+ATFDRLPL+DDELAAAMQNQHYQN R HHLDISDL+ + PQNLL NGTMPPEIY+
Sbjct: 181 ASFMHATFDRLPLEDDELAAAMQNQHYQNGRTHHLDISDLYAI-PQNLLMNGTMPPEIYS 239

Query: 256 WAPGKPMSKT 265
           WAPG+  SKT
Sbjct: 240 WAPGRNFSKT 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572333|ref|XP_002527105.1| DNA binding protein, putative [Ricinus communis] gi|223533528|gb|EEF35268.1| DNA binding protein, putative [Ricinus communis]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/273 (78%), Positives = 245/273 (89%), Gaps = 10/273 (3%)

Query: 1   MAGGTDLNVHSVATKAAVDRNQELDKGNHQRPGTDAMLMPPRVAKAVSPVSAA-DGETLR 59
           MAGG DL V  + +K  ++ NQE ++GN++RPG +A+LM P++ K+V PVS+A +GET+R
Sbjct: 1   MAGGADLAVPPIGSKNIMESNQEPNRGNYRRPGIEAILMSPKLPKSVPPVSSAVEGETIR 60

Query: 60  RPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSG 119
           RPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARR+QRGIC+LSG
Sbjct: 61  RPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRRQRGICVLSG 120

Query: 120 SGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGG 179
           SGCVTNVTLRQPA+SG+IVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGG
Sbjct: 121 SGCVTNVTLRQPASSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGG 180

Query: 180 VVVGALIASGPVVIMAASFMNATFDRLPLDDDEL---AAAMQNQHYQNSR-----HHHLD 231
            VVGALIASGPVVIMAASFMNATFDRLPLD+DE+   AAA+Q+QHYQNS+     HHHLD
Sbjct: 181 GVVGALIASGPVVIMAASFMNATFDRLPLDEDEIAAAAAAVQSQHYQNSKLHHHHHHHLD 240

Query: 232 ISDLHGLPPQNLLTNGTMPPEIYAWAPGKPMSK 264
           ISDL G+ PQNLLTNGT+  EIY+WAPG+ +++
Sbjct: 241 ISDLFGV-PQNLLTNGTLRQEIYSWAPGRSITQ 272

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494309|ref|XP_003617443.1| hypothetical protein MTR_5g091630 [Medicago truncatula] gi|355518778|gb|AET00402.1| hypothetical protein MTR_5g091630 [Medicago truncatula]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/255 (80%), Positives = 226/255 (88%), Gaps = 8/255 (3%)

Query: 18  VDRNQELDKGNHQRP----GTDAMLMPPRVAKAVSPVS-AADGETLRRPRGRPAGSKNKP 72
           ++  QE D GN        G D  LM P++ K+VSPVS AA+GETL+RPRGRPAGSKNKP
Sbjct: 1   MEHKQEQDNGNQNNNMSGNGIDVTLMSPKIPKSVSPVSSAAEGETLKRPRGRPAGSKNKP 60

Query: 73  KPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPA 132
           KPPIIVTRDSANAL+AHAMEVSSGCDV+ESL NFARRKQRG+CIL+G+GCVTNVTLRQPA
Sbjct: 61  KPPIIVTRDSANALKAHAMEVSSGCDVNESLLNFARRKQRGLCILNGTGCVTNVTLRQPA 120

Query: 133 TSGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVV 192
           +SG+IVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGG VVGALIASGPVV
Sbjct: 121 SSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPVV 180

Query: 193 IMAASFMNATFDRLPLDDDELAAAMQNQHYQNSR--HHHLDISDLHGLPPQNLLTNGTMP 250
           IMAASFM+ATFDRLPL+DDELAAAMQNQHYQN R   HHLDISDL+ + PQNLL NG MP
Sbjct: 181 IMAASFMHATFDRLPLEDDELAAAMQNQHYQNGRAAQHHLDISDLYAM-PQNLLMNGAMP 239

Query: 251 PEIYAWAPGKPMSKT 265
           PEIY+WAPG+ +SKT
Sbjct: 240 PEIYSWAPGRNLSKT 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085352|ref|XP_002307550.1| predicted protein [Populus trichocarpa] gi|222856999|gb|EEE94546.1| predicted protein [Populus trichocarpa]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 191/232 (82%), Positives = 212/232 (91%), Gaps = 2/232 (0%)

Query: 35  DAMLMPPRVAKAVSPVSAADG-ETLRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEV 93
           +A+L+  ++ KAV P+S+A G ETLRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEV
Sbjct: 2   EAILVASKLPKAVPPISSARGGETLRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEV 61

Query: 94  SSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSI 153
           SSGCDV ESLANFARRKQRGI +LSGSGCVTNVTLRQPA+SG+IVTLHGRFEILSLLGS+
Sbjct: 62  SSGCDVCESLANFARRKQRGISVLSGSGCVTNVTLRQPASSGAIVTLHGRFEILSLLGSV 121

Query: 154 LPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDDDEL 213
           LPPPAP GITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNA+FDRLPLD+D +
Sbjct: 122 LPPPAPQGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNASFDRLPLDEDGI 181

Query: 214 AAAMQNQHYQNSRHHHLDISDLHGLPPQNLLTNGTMPPEIYAWAPGKPMSKT 265
            AA+QNQHYQN R HHLDI DL+G+ PQ LLTNG + PEIY+WAP + MSK+
Sbjct: 182 TAAVQNQHYQNGRRHHLDIPDLYGM-PQKLLTNGAVTPEIYSWAPARTMSKS 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497591|ref|XP_004160444.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA-binding protein ESCAROLA-like [Cucumis sativus]

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 200/278 (71%), Positives = 234/278 (84%), Gaps = 15/278 (5%)

Query: 1   MAGG--TDLNVHSVATKAAVDRNQELDK-------GNHQ-RPGTDAMLMPPRVAKAVSPV 50
           MAGG   D+ VHS+ +K ++  + E +K        NHQ RP  D  L+ P+V   +S V
Sbjct: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPIS-V 59

Query: 51  SAADGETLRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRK 110
           +A   + LRRPRGRPAGSKNKPKPPIIVTRDSANALRAHA+EVS+GCDV+ESL+NFARRK
Sbjct: 60  AAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRK 119

Query: 111 QRGICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLA 170
           QRG+CILSGSGCVTNVTLRQ A+SG+IVTLHGRFEILS+LGSILPPPAP GITGLTIYL+
Sbjct: 120 QRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSMLGSILPPPAPSGITGLTIYLS 179

Query: 171 GAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDDDELAAAMQNQHY-QNSR-HH 228
           GAQGQVVGGVVVGALIASGPVVIMAA+FMNATFDRLP DD+E+AA MQ+QHY QN R HH
Sbjct: 180 GAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVAATMQSQHYGQNGRSHH 239

Query: 229 HLDISDLHGLPPQNLLTNGTMPPEIYAWA-PGKPMSKT 265
           HLD+SDL+G+ PQNL+TN ++PPE+Y+WA  G+ MSKT
Sbjct: 240 HLDVSDLYGV-PQNLITNSSLPPELYSWATAGRTMSKT 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439125|ref|XP_004137338.1| PREDICTED: uncharacterized protein LOC101219306 [Cucumis sativus]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 197/276 (71%), Positives = 232/276 (84%), Gaps = 15/276 (5%)

Query: 1   MAGG--TDLNVHSVATKAAVDRNQELDK-------GNHQ-RPGTDAMLMPPRVAKAVSPV 50
           MAGG   D+ VHS+ +K ++  + E +K        NHQ RP  D  L+ P+V   +S V
Sbjct: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPIS-V 59

Query: 51  SAADGETLRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRK 110
           +A   + LRRPRGRPAGSKNKPKPPIIVTRDSANALRAHA+EVS+GCDV+ESL+NFARRK
Sbjct: 60  AAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRK 119

Query: 111 QRGICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLA 170
           QRG+CILSGSGCVTNVTLRQ A+SG+IVTLHGRFEILS+LGSILPPPAP GITGLTIYL+
Sbjct: 120 QRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSMLGSILPPPAPSGITGLTIYLS 179

Query: 171 GAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDDDELAAAMQNQHY-QNSR-HH 228
           GAQGQVVGGVVVGALIASGPVVIMAA+FMNATFDRLP DD+E+AA MQ+QHY QN R HH
Sbjct: 180 GAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVAATMQSQHYGQNGRSHH 239

Query: 229 HLDISDLHGLPPQNLLTNGTMPPEIYAWAP-GKPMS 263
           HLD+SDL+G+ PQNL+TN ++PPE+Y+WA  G+ M+
Sbjct: 240 HLDVSDLYGV-PQNLITNSSLPPELYSWATAGRTMT 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827997|ref|XP_002881881.1| DNA-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297327720|gb|EFH58140.1| DNA-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 183/267 (68%), Positives = 214/267 (80%), Gaps = 11/267 (4%)

Query: 1   MAGGTDLNVHSVATKAAVDRNQEL-DKGNHQRPGTDAMLMPPRVAKAVSPVSAADGETLR 59
           MAGGT L   SV +K+   RN E  ++GN+     +   +P    KAV PVS+ +GE  +
Sbjct: 1   MAGGTALTPTSVGSKSVPMRNNEAAERGNNNNNNNNLKALP----KAVQPVSSIEGEMAK 56

Query: 60  RPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSG 119
           RPRGRPAGSKNKPKPPIIVT DS N+LRA+A+E+SSGCD+ E+L++FARRKQRG+CILS 
Sbjct: 57  RPRGRPAGSKNKPKPPIIVTHDSPNSLRANAVEISSGCDICETLSDFARRKQRGLCILSA 116

Query: 120 SGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGG 179
           +GCVTNVTLRQPA+SG+IVTLHGR+EILSLLGSILPPPAP GITGLTIYLAG QGQVVGG
Sbjct: 117 NGCVTNVTLRQPASSGAIVTLHGRYEILSLLGSILPPPAPLGITGLTIYLAGPQGQVVGG 176

Query: 180 VVVGALIASGPVVIMAASFMNATFDRLPLDDDELAAAMQN-QHYQNSRHHHLDISDLHGL 238
            VVG LIASGPVV+MAASFMNA FDRLP+DDDE AA+MQN Q+YQN R   LD  D+HGL
Sbjct: 177 GVVGGLIASGPVVLMAASFMNAVFDRLPMDDDE-AASMQNQQYYQNGRSRPLD--DIHGL 233

Query: 239 PPQNLLTNGTMPPEIYAWAPG-KPMSK 264
            PQNLLTNG    +IY+W P  + MSK
Sbjct: 234 -PQNLLTNGNSASDIYSWGPAQRAMSK 259

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2045585	257	TEK "AT2G42940" [Arabidopsis t	0.954	0.984	0.561	1.5e-67
TAIR|locus:2050946	317	AHL22 "AT2G45430" [Arabidopsis	0.777	0.649	0.469	1.8e-48
TAIR|locus:2132639	324	AT4G22810 "AT4G22810" [Arabido	0.788	0.645	0.442	2.8e-43
TAIR|locus:2118051	339	AT4G12050 "AT4G12050" [Arabido	0.807	0.631	0.428	6.6e-42
TAIR|locus:2101916	265	AHL18 "AT3G60870" [Arabidopsis	0.871	0.871	0.413	9.6e-41
TAIR|locus:2063469	285	GIK "GIANT KILLER" [Arabidopsi	0.584	0.543	0.516	1.8e-39
TAIR|locus:2122148	299	AGF1 "AT4G35390" [Arabidopsis	0.630	0.558	0.485	4.8e-39
TAIR|locus:2129490	292	AT4G17800 [Arabidopsis thalian	0.747	0.678	0.427	9.9e-39
TAIR|locus:505006460	281	AHL20 "AT4G14465" [Arabidopsis	0.766	0.722	0.408	7e-38
TAIR|locus:2099956	310	AGF2 "AT-hook protein of GA fe	0.626	0.535	0.476	1.9e-37

TAIR|locus:2045585 TEK "AT2G42940" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 150/267 (56%), Positives = 180/267 (67%)

Query:     1 MAGGTDLNVHSVATKAAVDRNQEL-DKGNHQRPGTDAMLMPPRVAKAVSPVSAADGETLR 59
             MAGGT L   SV +K+   RN E  ++GN      +   +P    KAV PVS+ +GE  +
Sbjct:     1 MAGGTALTPTSVGSKSVPMRNHEATERGN---TNNNLRALP----KAVQPVSSIEGEMAK 53

Query:    60 RPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSG 119
             RPRGRPAGSKNKPKPPIIVT DS N+LRA+A+E+SSGCD+ E+L++FARRKQRG+CILS 
Sbjct:    54 RPRGRPAGSKNKPKPPIIVTHDSPNSLRANAVEISSGCDICETLSDFARRKQRGLCILSA 113

Query:   120 SGCVTNVTLRQPATSGSIVTLHGRFEXXXXXXXXXXXXXXXXXXXXXXYLXXXXXXXXXX 179
             +GCVTNVTLRQPA+SG+IVTLHGR+E                      YL          
Sbjct:   114 NGCVTNVTLRQPASSGAIVTLHGRYEILSLLGSILPPPAPLGITGLTIYLAGPQGQVVGG 173

Query:   180 XXXXXLIASGPVVIMAASFMNATFDRLPLDDDELAAAMQNQ-HYQNSRHHHLDISDLHGL 238
                  LIASGPVV+MAASFMNA FDRLP+DDDE AA+MQNQ +YQN R   LD  D+HGL
Sbjct:   174 GVVGGLIASGPVVLMAASFMNAVFDRLPMDDDE-AASMQNQQYYQNGRSRPLD--DIHGL 230

Query:   239 PPQNLLTNGTMPPEIYAWAPG-KPMSK 264
             P QNLLTNG    +IY+W P  + MSK
Sbjct:   231 P-QNLLTNGNSASDIYSWGPAQRVMSK 256

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0010529 "negative regulation of transposition" evidence=IMP

GO:0031490 "chromatin DNA binding" evidence=IDA

GO:0035067 "negative regulation of histone acetylation" evidence=IMP

GO:1900111 "positive regulation of histone H3-K9 dimethylation" evidence=IMP

TAIR|locus:2050946 AHL22 "AT2G45430" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
 Identities = 100/213 (46%), Positives = 124/213 (58%)

Query:     4 GTDLNVHSVATKAAVDRNQELDKGNHQRPGTDAMLMPPRVAKAVSPVSAADGETLRRPRG 63
             G D++ H +      DR+ ++D   H   G D     P            D    RRPRG
Sbjct:    37 GHDIDQHRIGGLKR-DRDADIDPNEHSSAGKDQST--PGSGGESGGGGGGDNHITRRPRG 93

Query:    64 RPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCV 123
             RPAGSKNKPKPPII+TRDSANAL++H MEV++GCDV ES+  FARR+QRGIC+LSG+G V
Sbjct:    94 RPAGSKNKPKPPIIITRDSANALKSHVMEVANGCDVMESVTVFARRRQRGICVLSGNGAV 153

Query:   124 TNVTLRQPAT----SGSIVTLHGRFEXXXXXXXXXXXXXXXXXXXXXXYLXXXXXXXXXX 179
             TNVT+RQPA+      S+V LHGRFE                      YL          
Sbjct:   154 TNVTIRQPASVPGGGSSVVNLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGG 213

Query:   180 XXXXXLIASGPVVIMAASFMNATFDRLPLDDDE 212
                  L+ASGPVVIMAASF NA ++RLPL++D+
Sbjct:   214 SVVGPLMASGPVVIMAASFGNAAYERLPLEEDD 246

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2132639 AT4G22810 "AT4G22810" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 101/228 (44%), Positives = 134/228 (58%)

Query:    51 SAADGETLRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRK 110
             S  D +  RRPRGRPAGSKNKPKPPII+TRDSANALR H ME+  GCD+ ES+A FARR+
Sbjct:    97 SGGDHQMTRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIGDGCDLVESVATFARRR 156

Query:   111 QRGICILSGSGCVTNVTLRQPATS---GSIVTLHGRFEXXXXXXXXXXXXXXXXXXXXXX 167
             QRG+C++SG+G VTNVT+RQP +    GS+V+LHGRFE                      
Sbjct:   157 QRGVCVMSGTGNVTNVTIRQPGSHPSPGSVVSLHGRFEILSLSGSFLPPPAPPTATGLSV 216

Query:   168 YLXXXXXXXXXXXXXXXLIASGPVVIMAASFMNATFDRLPLDDDEL---------AAAMQ 218
             YL               L+ +GPVV+MAASF NA ++RLPL++DE+           +++
Sbjct:   217 YLAGGQGQVVGGSVVGPLLCAGPVVVMAASFSNAAYERLPLEEDEMQTPVHGGGGGGSLE 276

Query:   219 NQHY--QNSRHHHLDISDLHGLPPQNLLTNGTMPPE---IYAWAPGKP 261
             +     Q  +H    +S   GLPP NLL +  +  +    Y W+ G+P
Sbjct:   277 SPPMMGQQLQHQQQAMSGHQGLPP-NLLGSVQLQQQHDQSY-WSTGRP 322

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118051 AT4G12050 "AT4G12050" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 93/217 (42%), Positives = 126/217 (58%)

Query:     3 GGTDLNVHSVATKAAVDRNQELDKGNHQRPGTDAMLMPPRVAKAVSPVSAADGETLRRPR 62
             GG+ LN  S+      + +  +D   +   G++   M     +  S    +  +  RRPR
Sbjct:    64 GGSILN-RSIKMDRE-ETSDNMDNIANTNSGSEGKEMSLHGGEGGSGGGGSGEQMTRRPR 121

Query:    63 GRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGC 122
             GRPAGSKNKPK PII+TRDSANALR H ME+  GCD+ + +A FARR+QRG+C++SG+G 
Sbjct:   122 GRPAGSKNKPKAPIIITRDSANALRTHVMEIGDGCDIVDCMATFARRRQRGVCVMSGTGS 181

Query:   123 VTNVTLRQPATS-GSIVTLHGRFEXXXXXXXXXXXXXXXXXXXXXXYLXXXXXXXXXXXX 181
             VTNVT+RQP +  GS+V+LHGRFE                      YL            
Sbjct:   182 VTNVTIRQPGSPPGSVVSLHGRFEILSLSGSFLPPPAPPAATGLSVYLAGGQGQVVGGSV 241

Query:   182 XXXLIASGPVVIMAASFMNATFDRLPLDDDELAAAMQ 218
                L+ SGPVV+MAASF NA ++RLPL++DE+   +Q
Sbjct:   242 VGPLLCSGPVVVMAASFSNAAYERLPLEEDEMQTPVQ 278

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101916 AHL18 "AT3G60870" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 100/242 (41%), Positives = 134/242 (55%)

Query:    27 GNHQRPGTDAMLMPPRVAKAVSPV-SAADGETLRRPRGRPAGSKNKPKPPIIVTRDSANA 85
             G  +R   +  + P  + + ++   S  +    RRPRGRPAGSKNKPK PIIVTRDSANA
Sbjct:    26 GRQKRGREEEGVEPNNIGEDLATFPSGEENIKKRRPRGRPAGSKNKPKAPIIVTRDSANA 85

Query:    86 LRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATSGSIVTLHGRFE 145
              R H ME+++ CDV ESLA FARR+QRG+C+L+G+G VTNVT+RQP   G +V+LHGRFE
Sbjct:    86 FRCHVMEITNACDVMESLAVFARRRQRGVCVLTGNGAVTNVTVRQPG--GGVVSLHGRFE 143

Query:   146 XXXXXXXXXXXXXXXXXXXXXXYLXXXXXXXXXXXXXXXLIASGPVVIMAASFMNATFDR 205
                                   YL               L AS PVV+MAASF NA+++R
Sbjct:   144 ILSLSGSFLPPPAPPAASGLKVYLAGGQGQVIGGSVVGPLTASSPVVVMAASFGNASYER 203

Query:   206 LPLDDDELAA------AMQNQHYQNSRHHHLDISDLHGLPPQNLLTNGTMPPEIYAWAPG 259
             LPL+++E         A +    Q  +    D +   G  P NL+ + ++P E Y W   
Sbjct:   204 LPLEEEEETEREIDGNAARAIGTQTQKQLMQDATSFIG-SPSNLINSVSLPGEAY-WGTQ 261

Query:   260 KP 261
             +P
Sbjct:   262 RP 263

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

TAIR|locus:2063469 GIK "GIANT KILLER" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 80/155 (51%), Positives = 103/155 (66%)

Query:    58 LRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICIL 117
             +RRPRGRPAGSKNKPKPP+IVTR+SAN LRAH +EV SGCDV E ++ +ARR+QRGIC+L
Sbjct:    77 MRRPRGRPAGSKNKPKPPVIVTRESANTLRAHILEVGSGCDVFECISTYARRRQRGICVL 136

Query:   118 SGSGCVTNVTLRQPATSGSIVTLHGRFEXXXXXXXXXXXXXXXXXXXXXXYLXXXXXXXX 177
             SG+G VTNV++RQP  +G++VTL G FE                      +L        
Sbjct:   137 SGTGTVTNVSIRQPTAAGAVVTLRGTFEILSLSGSFLPPPAPPGATSLTIFLAGAQGQVV 196

Query:   178 XXXXXXXLIASGPVVIMAASFMNATFDRLPLDDDE 212
                    L+A+GPV++MAASF N  ++RLPLD+ E
Sbjct:   197 GGNVVGELMAAGPVMVMAASFTNVAYERLPLDEHE 231

GO:0005737 "cytoplasm" evidence=ISM

GO:0003677 "DNA binding" evidence=IDA

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005654 "nucleoplasm" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0048440 "carpel development" evidence=IMP

GO:0048653 "anther development" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2122148 AGF1 "AT4G35390" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 82/169 (48%), Positives = 108/169 (63%)

Query:    46 AVSPVSAADGETLRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLAN 105
             A S  +A+   + RRPRGRPAGSKNKPKPP I+TRDS N LR+H +EV+SG D+SE+++ 
Sbjct:    50 ATSSATASGSSSGRRPRGRPAGSKNKPKPPTIITRDSPNVLRSHVLEVTSGSDISEAVST 109

Query:   106 FARRKQRGICILSGSGCVTNVTLRQPAT--SGSIVTLHGRFEXXXXXXXXXXXXXXXXXX 163
             +A R+  G+CI+SG+G VTNVT+RQPA    G ++TLHGRF+                  
Sbjct:   110 YATRRGCGVCIISGTGAVTNVTIRQPAAPAGGGVITLHGRFDILSLTGTALPPPAPPGAG 169

Query:   164 XXXXYLXXXXXXXXXXXXXXXLIASGPVVIMAASFMNATFDRLPLDDDE 212
                 YL               LIASGPVV+MAASF NA +DRLP++++E
Sbjct:   170 GLTVYLAGGQGQVVGGNVAGSLIASGPVVLMAASFANAVYDRLPIEEEE 218

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=IEP

TAIR|locus:2129490 AT4G17800 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 88/206 (42%), Positives = 120/206 (58%)

Query:    59 RRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILS 118
             RRPRGRP GSKNKPKPP+I+TR+SAN LRAH +EV++GCDV + +A +ARR+QRGIC+LS
Sbjct:    82 RRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVTNGCDVFDCVATYARRRQRGICVLS 141

Query:   119 GSGCVTNVTLRQPATSGSIVTLHGRFEXXXXXXXXXXXXXXXXXXXXXXYLXXXXXXXXX 178
             GSG VTNV++RQP+ +G++VTL G FE                      +L         
Sbjct:   142 GSGTVTNVSIRQPSAAGAVVTLQGTFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVG 201

Query:   179 XXXXXXLIASGPVVIMAASFMNATFDRLPLDDDELAAAMQN-QHYQNSRHHHLDISDLHG 237
                   L A+GPV+++AASF N  ++RLPL++DE    +    +   +    +      G
Sbjct:   202 GSVVGELTAAGPVIVIAASFTNVAYERLPLEEDEQQQQLGGGSNGGGNLFPEVAAGGGGG 261

Query:   238 LP----PQNLLTNGTMPPEIYAWAPG 259
             LP    P N+  N  +P E   W PG
Sbjct:   262 LPFFNLPMNMQPNVQLPVE--GW-PG 284

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:505006460 AHL20 "AT4G14465" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 87/213 (40%), Positives = 122/213 (57%)

Query:    59 RRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILS 118
             RRPRGRP GSKNKPK PI VTRDS NALR+H +E+S G DV++++A+F+RR+QRG+C+LS
Sbjct:    67 RRPRGRPPGSKNKPKAPIFVTRDSPNALRSHVLEISDGSDVADTIAHFSRRRQRGVCVLS 126

Query:   119 GSGCVTNVTLRQPATSGSIVTLHGRFEXXXXXXXXXXXXXXXXXXXXXXYLXXXXXXXXX 178
             G+G V NVTLRQ A  G +V+L GRFE                      YL         
Sbjct:   127 GTGSVANVTLRQAAAPGGVVSLQGRFEILSLTGAFLPGPSPPGSTGLTVYLAGVQGQVVG 186

Query:   179 XXXXXXLIASGPVVIMAASFMNATFDRLPLDDDELAAAMQNQHYQNSRHHHL--DISDLH 236
                   L+A G V+++AA+F NAT++RLP++++E     +  H        +  ++ DL 
Sbjct:   187 GSVVGPLLAIGSVMVIAATFSNATYERLPMEEEEDGGGSRQIHGGGDSPPRIGSNLPDLS 246

Query:   237 GL--P----PQNLLTNGT--MPPEIYAWAPGKP 261
             G+  P    P +L+ NG   +  E Y W   +P
Sbjct:   247 GMAGPGYNMPPHLIPNGAGQLGHEPYTWVHARP 279

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2099956 AGF2 "AT-hook protein of GA feedback 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 80/168 (47%), Positives = 110/168 (65%)

Query:    46 AVSPVSAADGETLRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLAN 105
             AV P S + G T RRPRGRP GSKNKPK P++VT++S N+L++H +E+++G DV+ESL  
Sbjct:    76 AVEPGSGS-GSTGRRPRGRPPGSKNKPKSPVVVTKESPNSLQSHVLEIATGADVAESLNA 134

Query:   106 FARRKQRGICILSGSGCVTNVTLRQPATSGSIVTLHGRFEXXXXXXXXXXXXXX-XXXXX 164
             FARR+ RG+ +LSGSG VTNVTLRQPA SG +V+L G+FE                    
Sbjct:   135 FARRRGRGVSVLSGSGLVTNVTLRQPAASGGVVSLRGQFEILSMCGAFLPTSGSPAAAAG 194

Query:   165 XXXYLXXXXXXXXXXXXXXXLIASGPVVIMAASFMNATFDRLPLDDDE 212
                YL               LIASGPV+++AA+F NAT++RLP+++++
Sbjct:   195 LTIYLAGAQGQVVGGGVAGPLIASGPVIVIAATFCNATYERLPIEEEQ 242

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018904001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (1100 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	4e-43
cd11378	113	cd11378, DUF296, Domain of unknown function found	1e-32
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	2e-04

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  142 bits (360), Expect = 4e-43
 Identities = 57/122 (46%), Positives = 71/122 (58%), Gaps = 6/122 (4%)

Query: 86  LRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQP---ATSGSIVTLHG 142
            R H + +  G D+ ESL  FAR++  G  +LSG G V+NVTLRQP   A S  +VTL G
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 143 RFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGG-VVVGALIASGPVVIMAASFMNA 201
           RFEILSL G+I   P       L + LA   GQVVGG +  G + A+G VV+   SF NA
Sbjct: 61  RFEILSLSGTIS--PGGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSFENA 118

Query: 202 TF 203
             
Sbjct: 119 RR 120

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  114 bits (289), Expect = 1e-32
 Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 5/115 (4%)

Query: 87  RAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPAT---SGSIVTLHGR 143
           R   + +  G D+ ESL  FAR +     +LSG G V+N TLR P         VT  GR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 144 FEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASF 198
            EILSL G+I P    P    L + LA + G+V+GG ++GAL+A G V ++    
Sbjct: 61  LEILSLSGNISPDDGKPSG-HLHVSLADSDGRVIGGHLLGALVA-GTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 96  GCDVSESLANFARRKQRGICILSGSGCVTNVTLR---QPATSGSIVTLHGRFEILSLLGS 152
           G D+   L  FA ++     +++  G + +  LR           + ++   E+LSLLG+
Sbjct: 19  GEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGN 78

Query: 153 ILPPPAPPGITG----LTIYLAGAQGQVVGGVVVGA-LIASGPVVIM 194
           I               L   L    G  +GG ++   +  +  V I 
Sbjct: 79  IAL-------DDPFVHLHAALGDENGITLGGHLLEGEVFPTAEVFIR 118

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.96
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.95
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	88.95

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.96  E-value=9.2e-30  Score=207.57  Aligned_cols=118  Identities=31%  Similarity=0.440  Sum_probs=104.6

Q ss_pred             cceEEEEeCCCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccC--CCCceEEeeceEEEEEeeeeecCCCCCCCCc
Q 040216           86 LRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPA--TSGSIVTLHGRFEILSLLGSILPPPAPPGIT  163 (265)
Q Consensus        86 ~r~hVirl~~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~--~~~~~~tleG~fEILSLsGni~~~~~~~~~~  163 (265)
                      ||+|++||++||||+++|.+||+++++.+|++||+|+|++|+|++++  ..+.+.+++|+|||+||+|||...++ .++.
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g-~~~~   79 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG-KPFV   79 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT-EEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC-CCcc
Confidence            68999999999999999999999999999999999999999999984  34678999999999999999998444 3589


Q ss_pred             eEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceee
Q 040216          164 GLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDR  205 (265)
Q Consensus       164 HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~R  205 (265)
                      |+|++|++.||+++||||..+.+ ..++||+|.++....++|
T Consensus        80 HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~~~  120 (120)
T PF03479_consen   80 HLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINFTR  120 (120)
T ss_dssp             EEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEEEE
T ss_pred             eEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCccccC
Confidence            99999999999999999996666 448999999998887776

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.95  E-value=5.9e-27  Score=197.58  Aligned_cols=122  Identities=20%  Similarity=0.278  Sum_probs=114.7

Q ss_pred             ccceEEEEeCCCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccCC---CCceEEeeceEEEEEeeeeecCCCCCCC
Q 040216           85 ALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPAT---SGSIVTLHGRFEILSLLGSILPPPAPPG  161 (265)
Q Consensus        85 ~~r~hVirl~~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~~---~~~~~tleG~fEILSLsGni~~~~~~~~  161 (265)
                      .-|.|++||++|+|+++.|.+||+++++.+++++|+|++++++|++++.   +|.++++.++|||+||.|||+..+   +
T Consensus         8 ~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---p   84 (141)
T COG1661           8 SGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---P   84 (141)
T ss_pred             cceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---C
Confidence            3589999999999999999999999999999999999999999999985   378999999999999999999987   5


Q ss_pred             CceEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216          162 ITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD  210 (265)
Q Consensus       162 ~~HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~  210 (265)
                      +.|||++|++++|+++||||.++.+.. |+||+|.++....+.|.+++.
T Consensus        85 ~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~~  132 (141)
T COG1661          85 FVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDPT  132 (141)
T ss_pred             cEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCCC
Confidence            899999999999999999999998877 999999999999999999873

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=88.95  E-value=0.18  Score=26.84  Aligned_cols=12  Identities=42%  Similarity=0.833  Sum_probs=3.2

Q ss_pred             CCCCCCCCCCCC
Q 040216           59 RRPRGRPAGSKN   70 (265)
Q Consensus        59 ~r~rGRP~GSkn   70 (265)
                      +|+||||+.+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            366777776554

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	2e-32
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	2e-28
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	4e-20
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	1e-13
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	1e-10
3htn_A	149	Putative DNA binding protein; DUF269 family protei	1e-10

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score =  115 bits (290), Expect = 2e-32
 Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 10/158 (6%)

Query: 71  KPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQ-RGICILSGSGCVTNVTLR 129
                + V+  +A+  R +A+ +  G +V   L  F ++ Q R   I   +G +T+V LR
Sbjct: 3   GDPNSMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALR 62

Query: 130 QPATSGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASG 189
                 +  +L G FE++SL G++           L + ++   G ++GG ++       
Sbjct: 63  YAG-QEATTSLTGTFEVISLNGTLEL-----TGEHLHLAVSDPYGVMLGGHMMPGCTVRT 116

Query: 190 PVVIMAASFMNATFDRLPLDD---DELAAAMQNQHYQN 224
            + ++       TF R P      DEL  + + +H+ +
Sbjct: 117 TLELVIGELPALTFSRQPCAISGYDELHISSRLEHHHH 154

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score =  104 bits (261), Expect = 2e-28
 Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 10/147 (6%)

Query: 86  LRAHAMEVSSGCDVSESLANFARRKQ-RGICILSGSGCVTNVTLRQPATSGSIVTLHGRF 144
           +   A+ ++ G D+ + +    ++ +     I S  GC++ + +R   +    + +   F
Sbjct: 2   IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPF 60

Query: 145 EILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFD 204
           EILSL G++           L I +A AQG+V GG ++   + +    +M   +    F 
Sbjct: 61  EILSLSGTLTYQHC-----HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFT 115

Query: 205 RLPLDD---DELAAAMQNQHYQNSRHH 228
           R    +    EL  +     + +  HH
Sbjct: 116 REFDPNTGYSELVVSAAALEHHHHHHH 142

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 83.1 bits (205), Expect = 4e-20
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 87  RAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLR---QPATSGSIVTLHGR 143
           R +   V  G ++   + NF +++     I++G G + N  +    +      ++ L G 
Sbjct: 10  RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGS 69

Query: 144 FEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATF 203
           +E++SL+G++      P      + L   +G V GG +V   +    + +          
Sbjct: 70  YELISLIGNVSLKDGEP-FVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQ--ELKGEKI 126

Query: 204 DRLP 207
           +R P
Sbjct: 127 ERKP 130

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 65.8 bits (160), Expect = 1e-13
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 12/146 (8%)

Query: 87  RAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLR---QPATSGSIVTLHGR 143
           +   + +  G D+   +  F   K      +S  G V +  +    Q         L   
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP 69

Query: 144 FEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATF 203
            EILSL G++    + P    + + L G  G+V GG +  A + +  V ++         
Sbjct: 70  LEILSLSGNVSMKDSKP-FCHIHV-LLGKDGEVYGGHLFSAEVFACEVFVLP--LSGEAP 125

Query: 204 DRLPLDDDELAAAMQNQHYQNSRHHH 229
           +R   D+          H     HHH
Sbjct: 126 ERAF-DEQTGLFLWLEHH----HHHH 146

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 57.3 bits (138), Expect = 1e-10
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 6/129 (4%)

Query: 87  RAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLR--QPATSGSIVTLHGRF 144
             + M +  G +V ++L   AR +        G G ++  T               +   
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 145 EILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFD 204
           E+ ++ GSI      P I      +     Q  GG ++G  + +G   I    +     D
Sbjct: 73  EMANMTGSIAWKEGKPSIH-AHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY-PQRLD 130

Query: 205 RLPLDDDEL 213
           R    D E+
Sbjct: 131 RFV--DPEI 137

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 57.3 bits (138), Expect = 1e-10
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 87  RAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLR---QPATSGSIVTLHGR 143
             + + +++  ++ ++L  F + K      ++G G +  +TLR       +    T   +
Sbjct: 16  NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQ 75

Query: 144 FEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALI-ASGPVVIMAASFMNAT 202
            EI +L G+I        +  L I +  +    + G ++ A+   +G  V+      +  
Sbjct: 76  MEISNLTGNISSMNEQVYLH-LHITVGRSDYSALAGHLLSAIQNGAGEFVVED---YSER 131

Query: 203 FDRLPLDDDELA 214
             R    D  L 
Sbjct: 132 ISRTYNPDLGLN 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.97
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.97
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.97
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.96
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.96
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.95
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	97.49

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.97  E-value=4.2e-30  Score=216.98  Aligned_cols=127  Identities=24%  Similarity=0.361  Sum_probs=114.6

Q ss_pred             EecCCcCccceEEEEeCCCCcHHHHHHHHHHHcCC-cEEEEEeeeeeeeEEEeccCCCCceEEeeceEEEEEeeeeecCC
Q 040216           78 VTRDSANALRAHAMEVSSGCDVSESLANFARRKQR-GICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPP  156 (265)
Q Consensus        78 i~~~s~~~~r~hVirl~~GeDIvesI~~far~~~~-~~~VLSaiGaVsnVtLr~~~~~~~~~tleG~fEILSLsGni~~~  156 (265)
                      ++.++++.+|+|++||++||||+++|.+||+++++ ++||++++|+|++|+|+|++... +++++|+|||+||+|||++.
T Consensus        10 ~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~   88 (154)
T 2hx0_A           10 VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT   88 (154)
T ss_dssp             --CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT
T ss_pred             eccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC
Confidence            45678899999999999999999999999999996 67888999999999999998754 78899999999999999985


Q ss_pred             CCCCCCceEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216          157 PAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD  210 (265)
Q Consensus       157 ~~~~~~~HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~  210 (265)
                           ..|||++|++.||+++||||.+.+++..|+||++.+|.+..++|++|++
T Consensus        89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e  137 (154)
T 2hx0_A           89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAI  137 (154)
T ss_dssp             -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTT
T ss_pred             -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEecCCC
Confidence                 4899999999999999999997555557999999999998999999886

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.97  E-value=2.3e-30  Score=215.44  Aligned_cols=120  Identities=20%  Similarity=0.353  Sum_probs=110.4

Q ss_pred             ceEEEEeCCCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccCCC---CceEEeeceEEEEEeeeeecCCCCCCCCc
Q 040216           87 RAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATS---GSIVTLHGRFEILSLLGSILPPPAPPGIT  163 (265)
Q Consensus        87 r~hVirl~~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~~~---~~~~tleG~fEILSLsGni~~~~~~~~~~  163 (265)
                      ++|++||++||||+++|.+||+++++..|+++++|+|++|+|++++..   |..++++|+|||+||+|||++.+++ ++.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~-p~~   88 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE-PFV   88 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC-cee
Confidence            799999999999999999999999988888899999999999998864   3578999999999999999997654 489


Q ss_pred             eEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216          164 GLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD  210 (265)
Q Consensus       164 HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~  210 (265)
                      |+|++++|.||+++||||..++ .+ ++||++.+|.+..|+|++ ++
T Consensus        89 HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~-~e  132 (143)
T 2dt4_A           89 HAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP-TK  132 (143)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC-CT
T ss_pred             eEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC-CC
Confidence            9999999999999999999877 56 999999999999999999 65

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.97  E-value=1.3e-29  Score=211.34  Aligned_cols=119  Identities=24%  Similarity=0.377  Sum_probs=108.3

Q ss_pred             cceEEEEeCCCCcHHHHHHHHHHHcCC-cEEEEEeeeeeeeEEEeccCCCCceEEeeceEEEEEeeeeecCCCCCCCCce
Q 040216           86 LRAHAMEVSSGCDVSESLANFARRKQR-GICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPPGITG  164 (265)
Q Consensus        86 ~r~hVirl~~GeDIvesI~~far~~~~-~~~VLSaiGaVsnVtLr~~~~~~~~~tleG~fEILSLsGni~~~~~~~~~~H  164 (265)
                      |++|++||++||||+++|.+||+++++ ++||++++|+|++++|++++.. .+++++|+|||+||+|||++.     ..|
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~-----~~H   75 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSV-STLQVSAPFEILSLSGTLTYQ-----HCH   75 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSS-CEEEECSCEEEEEEEEEECSS-----CEE
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCC-ccEecCCcEEEEEeEEEEeCC-----CCE
Confidence            799999999999999999999999996 6788899999999999999875 368899999999999999984     489


Q ss_pred             EEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216          165 LTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD  210 (265)
Q Consensus       165 LHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~  210 (265)
                      ||++++|.||+++||||.+.+++..|+||++.+|.+..|+|++|++
T Consensus        76 lHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e  121 (142)
T 2p6y_A           76 LHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDPN  121 (142)
T ss_dssp             EEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEEETT
T ss_pred             EEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEeeCCC
Confidence            9999999999999999997555577999999999998999999876

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.96  E-value=5.4e-30  Score=215.28  Aligned_cols=121  Identities=17%  Similarity=0.215  Sum_probs=111.0

Q ss_pred             ceEEEEeCCCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccCCC---CceEEeeceEEEEEeeeeecCCCCCCCCc
Q 040216           87 RAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATS---GSIVTLHGRFEILSLLGSILPPPAPPGIT  163 (265)
Q Consensus        87 r~hVirl~~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~~~---~~~~tleG~fEILSLsGni~~~~~~~~~~  163 (265)
                      |.|++||++||||+++|.+||+++++..|+++++|+|++|+|++++..   |..++++|+|||+||+|||++.+++ ++.
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~-p~~   94 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQ-VYL   94 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCC-ceE
Confidence            899999999999999999999999998888899999999999998763   4578999999999999999998665 489


Q ss_pred             eEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216          164 GLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD  210 (265)
Q Consensus       164 HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~  210 (265)
                      |||++|++.||+++||||..+.+ ..|+||+|.++.+ .++|.+|++
T Consensus        95 HlH~sl~~~~G~v~gGHl~~g~V-~~t~Ei~i~~~~~-~~~R~~D~~  139 (149)
T 3htn_A           95 HLHITVGRSDYSALAGHLLSAIQ-NGAGEFVVEDYSE-RISRTYNPD  139 (149)
T ss_dssp             EEEEEEECTTSBEEEEEEEEEEE-EEEEEEEEEECCS-CCEEEEETT
T ss_pred             EEEEEEECCCCCEEeEEeCCCEE-EEEEEEEEEEcCC-eeEEeeCCc
Confidence            99999999999999999998844 5699999999988 799999876

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.96  E-value=5.1e-30  Score=214.05  Aligned_cols=120  Identities=18%  Similarity=0.233  Sum_probs=110.6

Q ss_pred             ceEEEEeCCCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccCCCC---ceEEeeceEEEEEeeeeecCCCCCCCCc
Q 040216           87 RAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATSG---SIVTLHGRFEILSLLGSILPPPAPPGIT  163 (265)
Q Consensus        87 r~hVirl~~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~~~~---~~~tleG~fEILSLsGni~~~~~~~~~~  163 (265)
                      ++|++||++||||+++|.+||+++++..|+++++|+|++++|++++...   .+++++|+|||+||+|||++.+++ ++.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~-p~~   88 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK-PFC   88 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC-cee
Confidence            7999999999999999999999999887777999999999999998753   578999999999999999997664 489


Q ss_pred             eEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216          164 GLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD  210 (265)
Q Consensus       164 HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~  210 (265)
                      |||++|+ .||+++||||.+++|  .|+||++.+|.+..|+|++|++
T Consensus        89 HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e  132 (146)
T 2h6l_A           89 HIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ  132 (146)
T ss_dssp             EEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred             eEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence            9999999 999999999998886  5999999999999999999986

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.95  E-value=1.4e-27  Score=200.04  Aligned_cols=121  Identities=18%  Similarity=0.183  Sum_probs=108.7

Q ss_pred             ceEEEEeCCCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccCCC---CceEEeeceEEEEEeeeeecCCCCCCCCc
Q 040216           87 RAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATS---GSIVTLHGRFEILSLLGSILPPPAPPGIT  163 (265)
Q Consensus        87 r~hVirl~~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~~~---~~~~tleG~fEILSLsGni~~~~~~~~~~  163 (265)
                      +.+++||++|+||+++|.+||+++++..++++++|++++++|++++..   +...+++ ++||+||+|||++.++. ++.
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG~-p~~   90 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEGK-PSI   90 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCCC-ceE
Confidence            779999999999999999999999999999999999999999998864   4567788 89999999999987654 589


Q ss_pred             eEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216          164 GLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD  210 (265)
Q Consensus       164 HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~  210 (265)
                      |||++++|.+|+++||||..+.|...|+||+|..+. ..+.|.+|++
T Consensus        91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~-~~~~R~~D~~  136 (147)
T 3hwu_A           91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP-QRLDRFVDPE  136 (147)
T ss_dssp             EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES-SCCBEEEETT
T ss_pred             EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC-CeEEEEECCc
Confidence            999999999999999999988665459999999875 4899999876

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=97.49  E-value=4.5e-05  Score=46.27  Aligned_cols=17  Identities=71%  Similarity=1.085  Sum_probs=15.0

Q ss_pred             CCCCCCCCCCCCCCCCC
Q 040216           57 TLRRPRGRPAGSKNKPK   73 (265)
Q Consensus        57 ~~~r~rGRP~GSknK~k   73 (265)
                      ..|||||||.|||||.-
T Consensus         3 tpKrpRgRpkGSKNk~~   19 (26)
T 2ezd_A            3 TPKRPRGRPKGSKNKGA   19 (26)
T ss_dssp             SCCCCSSCCTTCCCCSC
T ss_pred             CCcCCCCCcCcccccCc
Confidence            46999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	5e-32
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	1e-21

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score =  112 bits (282), Expect = 5e-32
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 10/137 (7%)

Query: 82  SANALRAHAMEVSSGCDVSESLANFARRKQ-RGICILSGSGCVTNVTLRQPATSGSIVTL 140
           +A+  R +A+ +  G +V   L  F ++ Q R   I   +G +T+V LR         +L
Sbjct: 2   NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSL 60

Query: 141 HGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMN 200
            G FE++SL G++           L + ++   G ++GG ++        + ++      
Sbjct: 61  TGTFEVISLNGTLELTG-----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPA 115

Query: 201 ATFDRLPLDD---DELA 214
            TF R P      DEL 
Sbjct: 116 LTFSRQPCAISGYDELH 132

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 85.4 bits (211), Expect = 1e-21
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 9/129 (6%)

Query: 87  RAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLR---QPATSGSIVTLHGR 143
           +   + +  G D+   +  F   K      +S  G V +  +    Q         L   
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP 69

Query: 144 FEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATF 203
            EILSL G++    + P    + + L G  G+V GG +  A + +  V ++         
Sbjct: 70  LEILSLSGNVSMKDSKPFC-HIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP--LSGEAP 125

Query: 204 DRLPLDDDE 212
           +R    D++
Sbjct: 126 ERAF--DEQ 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.97
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.95

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=3.4e-30  Score=211.63  Aligned_cols=124  Identities=23%  Similarity=0.365  Sum_probs=114.1

Q ss_pred             CcCccceEEEEeCCCCcHHHHHHHHHHHcCC-cEEEEEeeeeeeeEEEeccCCCCceEEeeceEEEEEeeeeecCCCCCC
Q 040216           82 SANALRAHAMEVSSGCDVSESLANFARRKQR-GICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPP  160 (265)
Q Consensus        82 s~~~~r~hVirl~~GeDIvesI~~far~~~~-~~~VLSaiGaVsnVtLr~~~~~~~~~tleG~fEILSLsGni~~~~~~~  160 (265)
                      +.+..|.|++||++||||+++|.+||+++++ +++|++++|++++|+|++|+.. ....++|+|||+||+|||.+.+   
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~-~~~~~~g~~Ei~sl~G~I~~~~---   77 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQE-ATTSLTGTFEVISLNGTLELTG---   77 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCS-SCEEEEEEEEEEEEEEEEETTE---
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCC-CcEEecCcEEEEEEEEEeccCC---
Confidence            4677899999999999999999999999995 7889999999999999999854 5678999999999999998864   


Q ss_pred             CCceEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCChH
Q 040216          161 GITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDDD  211 (265)
Q Consensus       161 ~~~HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~~  211 (265)
                        .|||++|++.||+++||||+++++++.|+||+|.+|.+..++|.+|++.
T Consensus        78 --~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~R~~D~~t  126 (136)
T d2hx0a1          78 --EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAIS  126 (136)
T ss_dssp             --EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTTT
T ss_pred             --CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceEEccCCCC
Confidence              7999999999999999999988888889999999999999999998863

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.95  E-value=1.9e-28  Score=200.40  Aligned_cols=121  Identities=17%  Similarity=0.217  Sum_probs=110.6

Q ss_pred             cceEEEEeCCCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccCCC---CceEEeeceEEEEEeeeeecCCCCCCCC
Q 040216           86 LRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATS---GSIVTLHGRFEILSLLGSILPPPAPPGI  162 (265)
Q Consensus        86 ~r~hVirl~~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~~~---~~~~tleG~fEILSLsGni~~~~~~~~~  162 (265)
                      -|.|++||++||||+++|.+||+++++.+|+++++|++++++|++++..   |..+.++|+|||+||+|||...+++ ++
T Consensus         9 gr~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~-p~   87 (138)
T d2h6la1           9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK-PF   87 (138)
T ss_dssp             CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE-EE
T ss_pred             CCEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCC-cE
Confidence            3899999999999999999999999999999999999999999998764   5678999999999999999988766 48


Q ss_pred             ceEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216          163 TGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD  210 (265)
Q Consensus       163 ~HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~  210 (265)
                      .|+|+++++ +|+++||||..+.+.  ++|+++.++.+..++|.+|++
T Consensus        88 ~HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~~~~~~~R~~D~~  132 (138)
T d2h6la1          88 CHIHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPLSGEAPERAFDEQ  132 (138)
T ss_dssp             EEEEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEECBSCCCBEEECTT
T ss_pred             EEEEEEECC-CCCEEEEEeCccEEE--EEEEEEEEecCCceEEecCCc
Confidence            999999997 799999999988764  579999999999999999876