Citrus Sinensis ID: 040222

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
METKSQNQNIQQKTNTKRANGNNMKRSSSSNSDSPHSPHRFHSPLRSDLGDPDPPDAFASPDASPQKSPINHDDKPNSKAIVAVADKFTQSSPMLEKPAEVKTSVMFNKAVREDGTPSVMKTEPGRVGGGRSGPVASILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSNWGKD
Secondary Structure (PSIPRED)
ccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEHHHHHHHHHHHHHHcHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
metksqnqNIQQKTntkrangnnmkrssssnsdsphsphrfhsplrsdlgdpdppdafaspdaspqkspinhddkpnsKAIVAVADkftqsspmlekpaevKTSVMFNKavredgtpsvmktepgrvgggrsgpvaSILKRSKFEARLMFANLGFRLIEVVLSLISFSVMaadktqgwsgdsfdryREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHViryhlrqpfdFFMDQILAYLLISASSAaatrvddwqsnwgkd
Flexible Loop (DISEMBL)
metksqnqniqqktntkrangnnmkrssssnsdsphspHRFHSPLRSDLGDPDPPDAFASPDASPQkspinhddkpnSKAIVAVADKftqsspmlekpaevktsvmfnkavredgtpsvmktepgrvgggrsgpvASILKRSKFEARLMFANLGFRLIEVVLSLISFSVMaadktqgwsgdsFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISASSAaatrvddwqsnwgkd
Low Complexity Region (SEG)
MEtksqnqniqqktntkRANGNNMKRssssnsdsphsphRFHSPLRSDLGdpdppdafaspdaspQKSPINHDDKPNSKAIVAVADKFTQSSPMLEKPAEVKTSVMFNKAVREDGTPSVMKTEpgrvgggrsgpvasILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQilayllisassaaaTRVDDWQSNWGKD
Disordered region (IsUnstruct)
*****************************************************************************************************************************************ILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAATRVD*********
Disordered Region (DISOPRED)
***************************************************************************************************************************************************LMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSNW***
Disordered Region (DISEMBL)
******************************************SPLRSDLGDPDPPDAFA****************PNSKAIVAVADKFTQSSPMLEKPAEVKTSVMFNKAVREDGTPSVMKTEPGRVGGGRSGPVASILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSNWGKD
Disordered Region (DISPRO)
***************************************************************************************************************************************ASILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISASSA*****DDWQSNWG**
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METKSQNQNIQQKTNTKRANGNNMKRSSSSNSDSPHSPHRFHSPLRSDLGDPDPPDAFASPDASPQKSPINHDDKPNSKAIVAVADKFTQSSPMLEKPAEVKTSVMFNKAVREDGTPSVMKTEPGRVGGGRSGPVASILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSNWGKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q84WP5	283	CASP-like protein At2g363	yes	no	0.637	0.590	0.619	1e-55
D7LIR2	276	CASP-like protein ARALYDR	N/A	no	0.637	0.605	0.601	1e-54
Q501G6	297	CASP-like protein At5g628	no	no	0.866	0.764	0.470	7e-54
D7MMW4	297	CASP-like protein ARALYDR	N/A	no	0.854	0.754	0.461	6e-53
Q9FNE8	270	CASP-like protein At5g403	no	no	0.561	0.544	0.478	3e-34
C5XTX2	452	CASP-like protein Sb04g00	N/A	no	0.343	0.199	0.488	6e-19
A3A2W2	308	CASP-like protein Os02g01	no	no	0.343	0.292	0.5	2e-17
B6UBY6	369	CASP-like protein 16 OS=Z	N/A	no	0.389	0.276	0.470	5e-16
C4JAF2	302	CASP-like protein 14 OS=Z	N/A	no	0.347	0.301	0.472	3e-15
C5XEK4	461	CASP-like protein Sb03g02	N/A	no	0.423	0.240	0.432	6e-15

>sp|Q84WP5|CSPL8_ARATH CASP-like protein At2g36330 OS=Arabidopsis thaliana GN=At2g36330 PE=1 SV=1

 Score =  216 bits (551), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/168 (61%), Positives = 130/168 (77%), Gaps = 1/168 (0%)

Query: 96  EKPAEVKTSVMFNKAVREDG-TPSVMKTEPGRVGGGRSGPVASILKRSKFEARLMFANLG 154
           E P+ +      N++V+E   T    +   GR  G RSG V++IL+RS+ E  + F+ LG
Sbjct: 79  ETPSPIVVVHNHNRSVKEVVPTRKSARVGSGRSSGQRSGAVSAILRRSRREEVVKFSALG 138

Query: 155 FRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYL 214
           FRL EVVL+LISFS+MAADKT+GWSGDSFDRY+EYR+CLSVNV+AFVYS FQA DLAY+L
Sbjct: 139 FRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAYHL 198

Query: 215 AKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSNWGKD 262
            K KH+I +HLR  F+F +DQ+LAYLL+SAS+AA TRVDDW SNWGKD
Sbjct: 199 VKEKHLISHHLRPLFEFIIDQVLAYLLMSASTAAVTRVDDWVSNWGKD 246

Arabidopsis thaliana (taxid: 3702)

>sp|D7LIR2|CSPLI_ARALL CASP-like protein ARALYDRAFT_482607 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_482607 PE=3 SV=1

 Score =  213 bits (542), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/168 (60%), Positives = 127/168 (75%), Gaps = 1/168 (0%)

Query: 96  EKPAEVKTSVMFNKAVREDG-TPSVMKTEPGRVGGGRSGPVASILKRSKFEARLMFANLG 154
           E P+ +      N++V+E   T    +   GR  G RSG V +IL+RS+ E  + F  LG
Sbjct: 72  ETPSPIVVVHNHNRSVKEVVPTRKTARVGSGRSSGQRSGAVLAILRRSRREEIVKFVALG 131

Query: 155 FRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYL 214
           FRL EVVL+LISFS+MAADKT+GWSGDSFDRY+EYR+CLSVNV+AF+Y+ FQA DLAY+L
Sbjct: 132 FRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFIYASFQACDLAYHL 191

Query: 215 AKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSNWGKD 262
            K KH+I +HLR  F+F +DQ+LAYLL+ AS+AA TRVDDW SNWGKD
Sbjct: 192 VKEKHLISHHLRPLFEFIIDQVLAYLLMCASTAAVTRVDDWVSNWGKD 239

Arabidopsis lyrata subsp. lyrata (taxid: 81972)

>sp|Q501G6|CSPLY_ARATH CASP-like protein At5g62820 OS=Arabidopsis thaliana GN=At5g62820 PE=2 SV=1

 Score =  210 bits (535), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 127/270 (47%), Positives = 158/270 (58%), Gaps = 43/270 (15%)

Query: 24  MKRSSSSNSD------SPHSPHRFHSPLRSDLGDPDPPDAFASPDASPQKSPINHDDKPN 77
           MKR++SSNS+      SPHSP RFHSPL SD GD  P   + SP+ SP K         N
Sbjct: 3   MKRTASSNSEAQSYNESPHSPLRFHSPL-SDAGDL-PESRYVSPEGSPFK-------IEN 53

Query: 78  SKAIVAVADKFTQSS------------------------PM-LEKPAEVKTSVMFNKAVR 112
            K+IVA  +K TQ S                        PM         + V+ N  VR
Sbjct: 54  PKSIVA-GNKLTQFSPLPSPIPPPPPQFPPPRRQRNARVPMNSSSDKSPSSMVVHNSWVR 112

Query: 113 EDGTPSVMKTEPGRVGGGRSGPVASILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAA 172
           EDG  +  +     + G  S    + + R++ +  +    LGFR+ EV+L +ISFS+MAA
Sbjct: 113 EDGGQTTTRKAGAPINGEES--TRTTVNRARGDDLVSLTALGFRITEVILCVISFSIMAA 170

Query: 173 DKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFF 232
           DKTQGWSGDS+DRY+EYRYCL+VNVIAFVYS F+A D A Y+AK  ++I       F F 
Sbjct: 171 DKTQGWSGDSYDRYKEYRYCLAVNVIAFVYSAFEACDAACYIAKESYMINCGFHDLFVFS 230

Query: 233 MDQILAYLLISASSAAATRVDDWQSNWGKD 262
           MDQ+LAYLL+SASS AATRVDDW SNWGKD
Sbjct: 231 MDQLLAYLLMSASSCAATRVDDWVSNWGKD 260

Arabidopsis thaliana (taxid: 3702)

>sp|D7MMW4|CSPLJ_ARALL CASP-like protein ARALYDRAFT_919556 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_919556 PE=3 SV=1

 Score =  207 bits (527), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 126/273 (46%), Positives = 160/273 (58%), Gaps = 49/273 (17%)

Query: 24  MKRSSSSNSD------SPHSPHRFHSPLRSDLGDPDPPDAFASPDASPQKSPINHDDKPN 77
           MKR+ SSNS+      SPHSP RFHSPL SD GD  P   + SP+ SP K         N
Sbjct: 3   MKRTVSSNSEAYSYNESPHSPLRFHSPL-SDAGDL-PESRYVSPEGSPFK-------IEN 53

Query: 78  SKAIVAVADKFTQ----------------------------SSPMLEKPAEVKTSVMFNK 109
            K+IVA  +K TQ                            +S + + P+ +   V+ N 
Sbjct: 54  PKSIVA-GNKLTQFSPLPSPIPPPPPQIPPPRRQRNARVPMNSSLDKSPSSM---VVQNS 109

Query: 110 AVREDGTPSVMKTEPGRVGGGRSGPVASILKRSKFEARLMFANLGFRLIEVVLSLISFSV 169
            VREDG  +  +     + G  S   A  + R++ +  +    LGFR+ EV+L +ISFS+
Sbjct: 110 WVREDGQQNTTRKAGAPMNGEESATTA--VNRARRDDLVSVTALGFRITEVILCVISFSI 167

Query: 170 MAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPF 229
           MAADKTQGWSGDS+DRY+EYRYCL+VNVIAFVYS F+A D A Y+AK  +++       F
Sbjct: 168 MAADKTQGWSGDSYDRYKEYRYCLAVNVIAFVYSAFEACDAACYMAKESYMMNCGFHDLF 227

Query: 230 DFFMDQILAYLLISASSAAATRVDDWQSNWGKD 262
            F MDQ+LAYLL+SASS AATRVDDW SNWGKD
Sbjct: 228 VFSMDQLLAYLLMSASSCAATRVDDWVSNWGKD 260

Arabidopsis lyrata subsp. lyrata (taxid: 81972)

>sp|Q9FNE8|CSPLV_ARATH CASP-like protein At5g40300 OS=Arabidopsis thaliana GN=At5g40300 PE=1 SV=1

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 101/163 (61%), Gaps = 16/163 (9%)

Query: 116 TPSVMKTE-PGRVGGGRSGPVASILKR---------------SKFEARLMFANLGFRLIE 159
           TPSV KTE P RV  G      S  +R               SK+ + +  A LGFR+I 
Sbjct: 71  TPSVAKTETPFRVTNGEEEKKVSESRRQLRPSFSSSSSTPRESKWASLIRKALLGFRVIA 130

Query: 160 VVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKH 219
            V  L+SFSVM +D+ +GW+ DSF  Y+E+R+CL+ NVI FVYSGF   DL Y L+    
Sbjct: 131 FVSCLVSFSVMVSDRDKGWAHDSFYNYKEFRFCLAANVIGFVYSGFMICDLVYLLSTSIR 190

Query: 220 VIRYHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSNWGKD 262
             R++LR   +F +DQ+LAYLL SAS++A+ RVDDWQSNWG D
Sbjct: 191 RSRHNLRHFLEFGLDQMLAYLLASASTSASIRVDDWQSNWGAD 233

Arabidopsis thaliana (taxid: 3702)

>sp|C5XTX2|CSPL8_SORBI CASP-like protein Sb04g002820 OS=Sorghum bicolor GN=Sb04g002820 PE=3 SV=1

 Score = 94.7 bits (234), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 58/90 (64%)

Query: 173 DKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFF 232
           D  +GW+ DS+  Y ++RY  +VNVI F+YS FQ   L   + + KH+I +  R  FDF 
Sbjct: 327 DTRKGWARDSYSNYTQFRYSEAVNVIGFIYSVFQFVALVELMRRNKHLIPHPKRDLFDFT 386

Query: 233 MDQILAYLLISASSAAATRVDDWQSNWGKD 262
           MDQ+L YLLIS+SS+A  RV D   NWG D
Sbjct: 387 MDQVLTYLLISSSSSATARVSDLIDNWGSD 416

Sorghum bicolor (taxid: 4558)

>sp|A3A2W2|CSPLO_ORYSJ CASP-like protein Os02g0134500 OS=Oryza sativa subsp. japonica GN=Os02g0134500 PE=2 SV=2

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 58/90 (64%)

Query: 173 DKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFF 232
           D  +G++ DS+  Y + RY  +VNVI FVYS  Q + LA  + + KH+        FDFF
Sbjct: 183 DSRKGFALDSYSNYSQLRYSEAVNVIGFVYSVLQFFVLADLMRRNKHLNPRRKGDYFDFF 242

Query: 233 MDQILAYLLISASSAAATRVDDWQSNWGKD 262
           MDQ+LAYLLIS+SS+A  RV DW  NWG D
Sbjct: 243 MDQVLAYLLISSSSSATARVGDWIDNWGSD 272

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B6UBY6|CSPLG_MAIZE CASP-like protein 16 OS=Zea mays PE=2 SV=1

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 66/102 (64%)

Query: 161 VLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHV 220
           VLSL +FSV+A+ +T GW+GD + R+ +YRY ++VNVI F YS  Q+     +L   +  
Sbjct: 233 VLSLAAFSVIASARTSGWAGDYYARHLQYRYAVAVNVIVFAYSVAQSLGKIRHLVSPRFT 292

Query: 221 IRYHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSNWGKD 262
            R         F+DQ+LAYLL+SASSAAA+R D W S +G D
Sbjct: 293 FRTMSSYYCSLFLDQVLAYLLMSASSAAASRNDLWVSRFGTD 334

Zea mays (taxid: 4577)

>sp|C4JAF2|CSPLE_MAIZE CASP-like protein 14 OS=Zea mays PE=2 SV=1

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 60/91 (65%)

Query: 172 ADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDF 231
           +D  +GW+ DS+  Y ++RY  +VNV+ F+YS FQ   LA  + + KH+I +  R  FDF
Sbjct: 176 SDTRRGWARDSYSNYAQFRYSEAVNVVGFLYSVFQFVALAELMRRNKHLIPHPKRDLFDF 235

Query: 232 FMDQILAYLLISASSAAATRVDDWQSNWGKD 262
            MDQ++AYLLIS+SS+A  R  D   NWG D
Sbjct: 236 TMDQVVAYLLISSSSSATARASDLIENWGSD 266

Zea mays (taxid: 4577)

>sp|C5XEK4|CSPL7_SORBI CASP-like protein Sb03g029220 OS=Sorghum bicolor GN=Sb03g029220 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 68/111 (61%)

Query: 152 NLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLA 211
           ++  RL   VLSL +FSV+A+ +T GW+GD +  + +YRY ++VNVI   YS  Q++   
Sbjct: 316 SVTLRLATAVLSLAAFSVIASARTSGWAGDYYAHHLQYRYAVAVNVIVCAYSIAQSFGEI 375

Query: 212 YYLAKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSNWGKD 262
             L   + + R         F+DQ LAYLL+SASSAAA+R D W S +G D
Sbjct: 376 RRLISPRFIFRSMSSYYCSLFLDQALAYLLMSASSAAASRNDLWVSRFGTD 426

Sorghum bicolor (taxid: 4558)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
255540689	306	conserved hypothetical protein [Ricinus	0.900	0.771	0.642	8e-76
224133518	295	predicted protein [Populus trichocarpa]	0.832	0.738	0.577	1e-64
224119318	282	predicted protein [Populus trichocarpa]	0.786	0.730	0.572	1e-62
449527382	316	PREDICTED: CASP-like protein ARALYDRAFT_	0.862	0.715	0.536	5e-61
449440680	316	PREDICTED: CASP-like protein ARALYDRAFT_	0.862	0.715	0.536	5e-61
225457050	314	PREDICTED: CASP-like protein At2g36330 [	0.847	0.707	0.490	3e-57
357462001	296	hypothetical protein MTR_3g078010 [Medic	0.931	0.824	0.518	1e-56
388511155	288	unknown [Medicago truncatula]	0.870	0.791	0.509	2e-56
357477367	252	hypothetical protein MTR_4g106940 [Medic	0.866	0.900	0.503	2e-55
145360675	283	uncharacterized protein [Arabidopsis tha	0.637	0.590	0.619	6e-54

>gi|255540689|ref|XP_002511409.1| conserved hypothetical protein [Ricinus communis] gi|223550524|gb|EEF52011.1| conserved hypothetical protein [Ricinus communis]

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 167/260 (64%), Positives = 189/260 (72%), Gaps = 24/260 (9%)

Query: 20  NGNNMKRSSSSNS------DSPHSPHRFHSPLRSDLGDPDPPDAFASPDASPQKSPINHD 73
           N +NMKRS+SSNS      +SPHSP R HSPL SD GDP     F SP  SPQKSP    
Sbjct: 17  NTSNMKRSASSNSDSHSHFESPHSPLRLHSPLPSDQGDPHESPPFVSPMNSPQKSP---- 72

Query: 74  DKPNSKAIVAVADKFTQSSPMLE-KP--------AEVKTSVMFNKAVREDGTPSVMKTEP 124
              NS AI+AV DKFTQ +P    KP        A+ K S+  N+AVRE+G P V + +P
Sbjct: 73  PVDNSMAIIAV-DKFTQCTPQPSPKPQENANFSQAQAKASMTVNRAVREEGPPVVERYKP 131

Query: 125 G-RVGG-GRSGPVASILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDS 182
           G R  G G   P A+   RS  E ++  A LGFR+ EVVL LISFSVMAADKTQGWSGDS
Sbjct: 132 GGRTSGVGVVQPAATW--RSGREEKMKVAELGFRISEVVLCLISFSVMAADKTQGWSGDS 189

Query: 183 FDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLI 242
           +DRYREYRYCLSVNVIAFVYSGFQAYDL+Y+LA GKHVI +HLR+ F+FFMDQILAYLLI
Sbjct: 190 YDRYREYRYCLSVNVIAFVYSGFQAYDLSYHLATGKHVIGHHLRRHFNFFMDQILAYLLI 249

Query: 243 SASSAAATRVDDWQSNWGKD 262
           SASS+AATRVDDWQSNWGKD
Sbjct: 250 SASSSAATRVDDWQSNWGKD 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133518|ref|XP_002321591.1| predicted protein [Populus trichocarpa] gi|222868587|gb|EEF05718.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/239 (57%), Positives = 170/239 (71%), Gaps = 21/239 (8%)

Query: 33  DSPHSPHRFHSPLRSDLGDPDPPDAFASPDASPQKSPINHDDKPNSKAIVAVADKFTQSS 92
           +SP SP R+ SPLRSDLGDP     + SP ASP+K       +P  +  VAV DK TQ S
Sbjct: 32  ESPISPLRYDSPLRSDLGDPPESPPYVSPSASPEKP------QPPLQKSVAVTDKSTQYS 85

Query: 93  PMLE--------KPAEVKTSVMFNKAVREDGTPSVMKTEPGRVG-GGRSGPVASILKRSK 143
           P L          P +   +V+ N+AVRE G  + +K    +VG  GRS   AS+++ S+
Sbjct: 86  PALSPIPPDNLAAPPQGMPAVVLNRAVREQGPAAGVK----QVGPEGRS--TASVMRGSR 139

Query: 144 FEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYS 203
            E ++    LGFR+ E+VL LISFSVMAADKT+GWSGDSFDRY+EYRYCL+VNVI F Y+
Sbjct: 140 KEEKMKIGELGFRVSEIVLCLISFSVMAADKTKGWSGDSFDRYKEYRYCLAVNVIGFAYA 199

Query: 204 GFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSNWGKD 262
           GFQAYDL Y++A GKHVIR+HLR  F+ FMDQILAYLL+SASS++ATRVDDWQSNWGKD
Sbjct: 200 GFQAYDLIYHIATGKHVIRHHLRHHFNLFMDQILAYLLVSASSSSATRVDDWQSNWGKD 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119318|ref|XP_002318041.1| predicted protein [Populus trichocarpa] gi|118482435|gb|ABK93140.1| unknown [Populus trichocarpa] gi|222858714|gb|EEE96261.1| predicted protein [Populus trichocarpa]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 135/236 (57%), Positives = 162/236 (68%), Gaps = 30/236 (12%)

Query: 38  PHRFHSPLRSDLGDPDPPDAFASPDASPQKS--PINHDDKPNSKAIVAV-ADKFTQSSPM 94
           P+RF SP RSD GDP     +ASP ASP+KS  P+      NS A+VAV   K TQ SP 
Sbjct: 29  PYRFQSPHRSDYGDPLESPPYASPSASPEKSLSPLQ-----NSMAVVAVDTHKSTQYSPA 83

Query: 95  --------LEKPAEVKTSVMFNKAVREDGTPSVMKTEPGRVGGGRSGPVASILKRSKFEA 146
                   L  P E+    + NK  RE     V++    +VG       AS+ +RS+ E 
Sbjct: 84  PSSFPPDNLSAPPEL----VLNKVARERVADGVVR----KVG------TASVARRSRKEE 129

Query: 147 RLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQ 206
           ++    LGFR+ E+++ LISF+VMAADK QGWSGDSF RY EYRYCL+VNVI FVY+GFQ
Sbjct: 130 KMRTGELGFRVSEIIMCLISFAVMAADKIQGWSGDSFYRYIEYRYCLAVNVIGFVYAGFQ 189

Query: 207 AYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSNWGKD 262
           AYDL+Y LA GKHVIR+HLRQ F+FFMDQILAYLL+SASS+AATRVDDWQSNWGKD
Sbjct: 190 AYDLSYQLATGKHVIRHHLRQHFNFFMDQILAYLLVSASSSAATRVDDWQSNWGKD 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527382|ref|XP_004170690.1| PREDICTED: CASP-like protein ARALYDRAFT_919556-like [Cucumis sativus]

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 146/272 (53%), Positives = 176/272 (64%), Gaps = 46/272 (16%)

Query: 30  SNSDSPHSPHRFHSPLRSDLGDPDPPDAFASPDASPQKSPINHDDKPNSKAIVA--VADK 87
           S+ +SPHSP RFHSPLRSD GDP     +ASPD SP+K P       NSKAIV   V DK
Sbjct: 15  SHMESPHSPLRFHSPLRSDAGDPMETPPYASPDTSPEKLP------DNSKAIVVVDVVDK 68

Query: 88  FTQSSPM------LEKPAE---------VKTSVMFNKAVREDGTPSVMKTEPGRVGGGRS 132
            TQ SP+        KP E           + +MFN+A++E+   SV K  P  VGG  +
Sbjct: 69  STQFSPLPSPYAASRKPLENVNFVGDRSTSSKIMFNRAMKEEVPQSVTKVGPAGVGGEEN 128

Query: 133 -------------------GPV---ASILKRSKFEARLMFANLGFRLIEVVLSLISFSVM 170
                               PV   A + +RSK +A L+ A LGFR+ EV + LISFSVM
Sbjct: 129 GGGGGGGGGAGGGGGGGGRSPVKQMAPMSRRSKDDA-LVKAALGFRVCEVAVCLISFSVM 187

Query: 171 AADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFD 230
           A+DKTQGWSGDSFDRY+EYRYCL+VN+IAFVY+ FQA+DL + L K  H+IR+  R  FD
Sbjct: 188 ASDKTQGWSGDSFDRYKEYRYCLTVNIIAFVYAAFQAFDLVFTLIKKNHMIRHQFRCYFD 247

Query: 231 FFMDQILAYLLISASSAAATRVDDWQSNWGKD 262
           FFMDQ+LAYLLIS+SS+AATRVDDWQSNWGKD
Sbjct: 248 FFMDQVLAYLLISSSSSAATRVDDWQSNWGKD 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440680|ref|XP_004138112.1| PREDICTED: CASP-like protein ARALYDRAFT_919556-like [Cucumis sativus]

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 146/272 (53%), Positives = 176/272 (64%), Gaps = 46/272 (16%)

Query: 30  SNSDSPHSPHRFHSPLRSDLGDPDPPDAFASPDASPQKSPINHDDKPNSKAIVA--VADK 87
           S+ +SPHSP RFHSPLRSD GDP     +ASPD SP+K P       NSKAIV   V DK
Sbjct: 15  SHMESPHSPLRFHSPLRSDAGDPMETPPYASPDTSPEKLP------DNSKAIVVVDVVDK 68

Query: 88  FTQSSPM------LEKPAE---------VKTSVMFNKAVREDGTPSVMKTEPGRVGGGRS 132
            TQ SP+        KP E           + +MFN+A++E+   SV K  P  VGG  +
Sbjct: 69  STQFSPLPSPYAASRKPLENVNFVGDRSTSSKIMFNRAMKEEVPQSVTKVGPVGVGGEEN 128

Query: 133 -------------------GPV---ASILKRSKFEARLMFANLGFRLIEVVLSLISFSVM 170
                               PV   A + +RSK +A L+ A LGFR+ EV + LISFSVM
Sbjct: 129 GGGGGGGGGAGAGGGGGGRSPVKQMAPMSRRSKDDA-LVKAALGFRVCEVAVCLISFSVM 187

Query: 171 AADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFD 230
           A+DKTQGWSGDSFDRY+EYRYCL+VN+IAFVY+ FQA+DL + L K  H+IR+  R  FD
Sbjct: 188 ASDKTQGWSGDSFDRYKEYRYCLTVNIIAFVYAAFQAFDLVFTLIKKNHMIRHQFRCYFD 247

Query: 231 FFMDQILAYLLISASSAAATRVDDWQSNWGKD 262
           FFMDQ+LAYLLIS+SS+AATRVDDWQSNWGKD
Sbjct: 248 FFMDQVLAYLLISSSSSAATRVDDWQSNWGKD 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457050|ref|XP_002279713.1| PREDICTED: CASP-like protein At2g36330 [Vitis vinifera]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 132/269 (49%), Positives = 163/269 (60%), Gaps = 47/269 (17%)

Query: 28  SSSNSDSPHSPHRFHSPLRSDLGDPDPPDAFASPDASPQKSPINHDDKPNSKAIVAVADK 87
           S S  +SPHSP R  SP RSD  +P+PP+           SP+N  +K  S ++V V +K
Sbjct: 22  SQSLMESPHSPLRSESPFRSD--EPEPPEC----------SPVNSPEKHQSNSMVPV-EK 68

Query: 88  FTQSSPMLEK-------------PAE-----VKTSVMFNKAVREDGTPSVMKTEPGRVGG 129
           ++  SP                 P E     + + V FN+AVR++    V K +P     
Sbjct: 69  YSPHSPHRSSLQGLPGQHNPTALPREHAKSPLSSVVTFNRAVRDEMPAVVTKVDPSGGRD 128

Query: 130 GRS----------------GPVASILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAAD 173
           G +                G V SI++RS+ E  +  A LGFR+ EVV  LISFSVMAAD
Sbjct: 129 GFTGGGGRVEDGGRERRPPGAVTSIVRRSRREDMVKRAELGFRVCEVVFCLISFSVMAAD 188

Query: 174 KTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFM 233
           KTQGWSGDSFDRY+EYRYCLS+ VIAFVYSGFQA DLAY+L   KH+   H R   +FFM
Sbjct: 189 KTQGWSGDSFDRYKEYRYCLSMTVIAFVYSGFQACDLAYHLVTQKHMFSNHSRYHLNFFM 248

Query: 234 DQILAYLLISASSAAATRVDDWQSNWGKD 262
           DQ+LAYLL+SASS+AATRVDDWQSNWGKD
Sbjct: 249 DQVLAYLLMSASSSAATRVDDWQSNWGKD 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462001|ref|XP_003601282.1| hypothetical protein MTR_3g078010 [Medicago truncatula] gi|355490330|gb|AES71533.1| hypothetical protein MTR_3g078010 [Medicago truncatula]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 137/264 (51%), Positives = 166/264 (62%), Gaps = 20/264 (7%)

Query: 9   NIQQKTNTKRANGNN---MKRSSSSNSDSPH--SPHRFHSPLRSDLGDPDPPDAFASPD- 62
           N   K + +++ G++   MK+S S  SDS    SP RF SPLR D     P D   SP+ 
Sbjct: 5   NSAMKKSREKSRGSDSPAMKKSWSRGSDSTQFESPARFCSPLRWD-----PTD---SPEY 56

Query: 63  ASPQKSPINHDDKPNSKAIVAVADKFTQSSP----MLEKPAEVKTSVMFNKAVREDGTPS 118
            SP+ SP    +  N  A+VAV DK  Q +P      +KP E   +V+ N++ RE+    
Sbjct: 57  RSPENSPGKMMENSNPMAVVAV-DKVRQLTPGKLTEQQKPPENALAVV-NRSEREEPERQ 114

Query: 119 VMKTEPGRVGGGRSGPVASILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGW 178
           VMK      GG R   V S       E     A LGFRL EVV+ LISFSVMAA+KTQGW
Sbjct: 115 VMKVGTTEEGGERERRVRSDSVGKTAEEVTRKAALGFRLCEVVVCLISFSVMAANKTQGW 174

Query: 179 SGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILA 238
           SGDS+DRY+EYRYCLSVNVI F Y+  QA DLA+ L   KH+I +HLR  F FFMDQ++A
Sbjct: 175 SGDSYDRYKEYRYCLSVNVIGFAYAALQACDLAFQLVTEKHMISHHLRYHFQFFMDQVVA 234

Query: 239 YLLISASSAAATRVDDWQSNWGKD 262
           YLLISASS+AATRVDDWQSNWGKD
Sbjct: 235 YLLISASSSAATRVDDWQSNWGKD 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511155|gb|AFK43639.1| unknown [Medicago truncatula]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 162/265 (61%), Gaps = 37/265 (13%)

Query: 20  NGNNMKRSSSSNSDSPHSPHRFHSPLRSDLGDPDPPDAFASPDASPQKSPINHDDKPNSK 79
           N +     SSS+ DSPHSP RF S   SD GDP     F S + SP+ S   H D  NS+
Sbjct: 3   NASTRNSDSSSHFDSPHSPLRFKSSPLSDGGDP-----FHSTENSPENS---HRD--NSR 52

Query: 80  AIV-------------AVADKFTQSSPMLEKPAEVKTSVMFNKAVREDGTPSVMKTEPGR 126
           AIV             +V D   ++ P+ E+PA     V+ N+AVR D  P+     P  
Sbjct: 53  AIVIIEPSIQHSQVSASVPDSEHRNHPVNEQPA-----VVVNRAVRNDPPPTTTNLGPNV 107

Query: 127 VGGGRSGPVASILKR---------SKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQG 177
             GGR        +R         SK +       LGFR+ EVVL LISFSVMAADKTQG
Sbjct: 108 TRGGREDGGGRSRQRTTTPAVPAWSKSDVMTGKVALGFRISEVVLCLISFSVMAADKTQG 167

Query: 178 WSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQIL 237
           WSGDSFDRY+EYRYCLS+ VI FVY+GFQA +L Y L  GKH++ +HLR  FDF MDQ+L
Sbjct: 168 WSGDSFDRYKEYRYCLSMTVIGFVYAGFQACELGYQLITGKHIVNHHLRFHFDFLMDQVL 227

Query: 238 AYLLISASSAAATRVDDWQSNWGKD 262
           AYLLIS++S+AATRVDDWQSNWGKD
Sbjct: 228 AYLLISSASSAATRVDDWQSNWGKD 252

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477367|ref|XP_003608969.1| hypothetical protein MTR_4g106940 [Medicago truncatula] gi|355510024|gb|AES91166.1| hypothetical protein MTR_4g106940 [Medicago truncatula]

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/264 (50%), Positives = 161/264 (60%), Gaps = 37/264 (14%)

Query: 20  NGNNMKRSSSSNSDSPHSPHRFHSPLRSDLGDPDPPDAFASPDASPQKSPINHDDKPNSK 79
           N +     SSS+ DSPHSP RF S   SD GDP     F S + SP+ S   H D  NS+
Sbjct: 3   NASTRNSDSSSHFDSPHSPLRFKSSPLSDGGDP-----FHSTENSPENS---HRD--NSR 52

Query: 80  AIV-------------AVADKFTQSSPMLEKPAEVKTSVMFNKAVREDGTPSVMKTEPGR 126
           AIV             +V D   ++ P+ E+PA     V+ N+A+R D  P+     P  
Sbjct: 53  AIVIIEPSIQHSQVSASVPDSEHRNHPVNEQPA-----VVVNRAMRNDPPPTTTNLGPNV 107

Query: 127 VGGGRSGPVASILKR---------SKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQG 177
             GGR        +R         SK +       LGFR+ EVVL LISFSVMAADKTQG
Sbjct: 108 TRGGREDGGGRSRQRTTTPAVPAWSKSDVMTGKVALGFRISEVVLCLISFSVMAADKTQG 167

Query: 178 WSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQIL 237
           WSGDSFDRY+EYRYCLS+ VI FVY+GFQA +L Y L  GKH++ +HLR  FDF MDQ+L
Sbjct: 168 WSGDSFDRYKEYRYCLSMTVIGFVYAGFQACELGYQLITGKHIVNHHLRFHFDFLMDQVL 227

Query: 238 AYLLISASSAAATRVDDWQSNWGK 261
           AYLLIS++S+AATRVDDWQSNWGK
Sbjct: 228 AYLLISSASSAATRVDDWQSNWGK 251

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145360675|ref|NP_181174.2| uncharacterized protein [Arabidopsis thaliana] gi|75148783|sp|Q84WP5.1|CSPL8_ARATH RecName: Full=CASP-like protein At2g36330 gi|27754604|gb|AAO22748.1| unknown protein [Arabidopsis thaliana] gi|330254140|gb|AEC09234.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 104/168 (61%), Positives = 130/168 (77%), Gaps = 1/168 (0%)

Query: 96  EKPAEVKTSVMFNKAVREDG-TPSVMKTEPGRVGGGRSGPVASILKRSKFEARLMFANLG 154
           E P+ +      N++V+E   T    +   GR  G RSG V++IL+RS+ E  + F+ LG
Sbjct: 79  ETPSPIVVVHNHNRSVKEVVPTRKSARVGSGRSSGQRSGAVSAILRRSRREEVVKFSALG 138

Query: 155 FRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYL 214
           FRL EVVL+LISFS+MAADKT+GWSGDSFDRY+EYR+CLSVNV+AFVYS FQA DLAY+L
Sbjct: 139 FRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAYHL 198

Query: 215 AKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSNWGKD 262
            K KH+I +HLR  F+F +DQ+LAYLL+SAS+AA TRVDDW SNWGKD
Sbjct: 199 VKEKHLISHHLRPLFEFIIDQVLAYLLMSASTAAVTRVDDWVSNWGKD 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2049500	283	AT2G36330 "AT2G36330" [Arabido	0.839	0.777	0.420	7.5e-41
TAIR|locus:2170703	297	AT5G62820 "AT5G62820" [Arabido	0.595	0.525	0.481	7.3e-38
TAIR|locus:2170603	270	AT5G40300 "AT5G40300" [Arabido	0.709	0.688	0.354	4.5e-27

TAIR|locus:2049500 AT2G36330 "AT2G36330" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 95/226 (42%), Positives = 124/226 (54%)

Query:    43 SPLRSDLGXXXXXXXXXXXXXXXQKSP---INHDDKPNSKAIVAVADKFTQSSP--MLEK 97
             SP  SD                   SP   ++H  +   +   +  +     +P  + E 
Sbjct:    21 SPPPSDTSMAIVAFDNSTTHFSSSPSPPHSLDHSSESEKEDAKSKPESRRNKNPGKVEET 80

Query:    98 PAEVKTSVMFNKAVRED-GTPSVMKTEXXXXXXXXXXXXXXILKRSKFEARLMFANLGFR 156
             P+ +      N++V+E   T    +                IL+RS+ E  + F+ LGFR
Sbjct:    81 PSPIVVVHNHNRSVKEVVPTRKSARVGSGRSSGQRSGAVSAILRRSRREEVVKFSALGFR 140

Query:   157 LIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAK 216
             L EVVL+LISFS+MAADKT+GWSGDSFDRY+EYR+CLSVNV+AFVYS FQA DLAY+L K
Sbjct:   141 LSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAYHLVK 200

Query:   217 GKHVIRYHLRQPFDFFMDQXXXXXXXXXXXXXXTRVDDWQSNWGKD 262
              KH+I +HLR  F+F +DQ              TRVDDW SNWGKD
Sbjct:   201 EKHLISHHLRPLFEFIIDQVLAYLLMSASTAAVTRVDDWVSNWGKD 246

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2170703 AT5G62820 "AT5G62820" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 76/158 (48%), Positives = 94/158 (59%)

Query:   105 VMFNKAVREDGTPSVMKTEXXXXXXXXXXXXXXILKRSKFEARLMFANLGFRLIEVVLSL 164
             V+ N  VREDG  +   T                + R++ +  +    LGFR+ EV+L +
Sbjct:   105 VVHNSWVREDGGQTT--TRKAGAPINGEESTRTTVNRARGDDLVSLTALGFRITEVILCV 162

Query:   165 ISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYH 224
             ISFS+MAADKTQGWSGDS+DRY+EYRYCL+VNVIAFVYS F+A D A Y+AK  ++I   
Sbjct:   163 ISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNVIAFVYSAFEACDAACYIAKESYMINCG 222

Query:   225 LRQPFDFFMDQXXXXXXXXXXXXXXTRVDDWQSNWGKD 262
                 F F MDQ              TRVDDW SNWGKD
Sbjct:   223 FHDLFVFSMDQLLAYLLMSASSCAATRVDDWVSNWGKD 260

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2170603 AT5G40300 "AT5G40300" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 68/192 (35%), Positives = 97/192 (50%)

Query:    73 DDKPNSKAIVAVADKFTQSSP--MLEKPAEVKTSVMFNKAVREDGTPSVMKTEXXXXXXX 130
             +  P+S  + ++ D    SSP  ++  P+  KT   F      +G      +E       
Sbjct:    46 ESPPDSPTLSSIPDSHG-SSPHTIIPTPSVAKTETPFRVT---NGEEEKKVSESRRQLRP 101

Query:   131 XXXXXXXILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYR 190
                      + SK+ + +  A LGFR+I  V  L+SFSVM +D+ +GW+ DSF  Y+E+R
Sbjct:   102 SFSSSSSTPRESKWASLIRKALLGFRVIAFVSCLVSFSVMVSDRDKGWAHDSFYNYKEFR 161

Query:   191 YCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQXXXXXXXXXXXXXXT 250
             +CL+ NVI FVYSGF   DL Y L+      R++LR   +F +DQ               
Sbjct:   162 FCLAANVIGFVYSGFMICDLVYLLSTSIRRSRHNLRHFLEFGLDQMLAYLLASASTSASI 221

Query:   251 RVDDWQSNWGKD 262
             RVDDWQSNWG D
Sbjct:   222 RVDDWQSNWGAD 233


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      262       191   0.00094  110 3  11 22  0.42    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  166 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.04u 0.12s 14.16t   Elapsed:  00:00:00
  Total cpu time:  14.04u 0.12s 14.16t   Elapsed:  00:00:00
  Start:  Fri May 10 08:26:56 2013   End:  Fri May 10 08:26:56 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XV0498 hypothetical protein (295 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
pfam04535	150	pfam04535, DUF588, Domain of unknown function (DUF	3e-31
pfam01284	132	pfam01284, MARVEL, Membrane-associating domain	5e-05

>gnl|CDD|218134 pfam04535, DUF588, Domain of unknown function (DUF588)

 Score =  112 bits (283), Expect = 3e-31
 Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 151 ANLGFRLIEVVLSLISFSVMAADKT-----QGWSGDSFDRYREYRYCLSVNVIAFVYSGF 205
           A L  RL   VL+L +  VM  +K            SF     +RY +  N IA  YS  
Sbjct: 7   AELVLRLAAFVLALAAAVVMGTNKQTKPFFFIQKKASFSDLPAFRYLVVANAIAAGYSLL 66

Query: 206 QAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSN 258
           Q     Y L++ K   +        F +DQ++AYLL++A+SAAA  V   ++ 
Sbjct: 67  QLVLSVYLLSRKKPRTKGLAW--LLFILDQVMAYLLLAAASAAAAIVYLARNG 117

This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices. Length = 150

>gnl|CDD|216411 pfam01284, MARVEL, Membrane-associating domain

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 13/104 (12%)

Query: 153 LGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAY 212
              R++++V ++I   ++A+           +      + + V V +F+ +    Y L  
Sbjct: 7   GILRILQLVFAIIVLGLIAS------LIAGSNPSA-VNFAVFVAVFSFLIA---LYFLLL 56

Query: 213 YLAKGKHVIRYHLRQP-FDFFMDQILAYLLISASSAAATRVDDW 255
           YL    +     +  P  D  +D + A   ++A  A A  +   
Sbjct: 57  YLFGYSYFPS--IAWPLVDLILDALAALFWLAAFIALAAALRGH 98

MARVEL domain-containing proteins are often found in lipid-associating proteins - such as Occludin and MAL family proteins. It may be part of the machinery of membrane apposition events, such as transport vesicle biogenesis. Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
PF04535	149	DUF588: Domain of unknown function (DUF588); Inter	99.93
TIGR01569	154	A_tha_TIGR01569 plant integral membrane protein TI	99.88
PF01284	144	MARVEL: Membrane-associating domain; InterPro: IPR	97.83

>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity

Probab=99.93  E-value=9.7e-26  Score=188.30  Aligned_cols=108  Identities=43%  Similarity=0.532  Sum_probs=99.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCc-----cccccccccceehhHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 040222          148 LMFANLGFRLIEVVLSLISFSVMAADKTQGW-----SGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIR  222 (262)
Q Consensus       148 l~ia~LvLRlla~vfslaSl~VMaTnkqt~~-----~~a~Fsd~~AFrYLVaanaIa~~YSllQl~~~iy~L~~gr~l~~  222 (262)
                      ++.++|+||+++++++++|+++|++|+|+..     .+++|+|+++|+|+|++|+|+|+|+++|++.+++.+.+|+  .+
T Consensus         3 ~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~--~~   80 (149)
T PF04535_consen    3 LRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK--LR   80 (149)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--Cc
Confidence            5678999999999999999999999999753     3689999999999999999999999999999999998877  56


Q ss_pred             cccccceEEechHHHHHHHHHHhhhhhhhhhhhhh
Q 040222          223 YHLRQPFDFFMDQILAYLLISASSAAATRVDDWQS  257 (262)
Q Consensus       223 ~~~~awf~FigDQVlAYLLlSAASAAAaivdd~~s  257 (262)
                      ++...|++|++||+++||++||++||+++.++++.
T Consensus        81 ~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~  115 (149)
T PF04535_consen   81 SKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKK  115 (149)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77889999999999999999999999999988753

It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.

>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569

Probab=99.88  E-value=2.6e-23  Score=176.67  Aligned_cols=98  Identities=24%  Similarity=0.265  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcc-------ccccccccceehhHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Q 040222          153 LGFRLIEVVLSLISFSVMAADKTQGWS-------GDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHL  225 (262)
Q Consensus       153 LvLRlla~vfslaSl~VMaTnkqt~~~-------~a~Fsd~~AFrYLVaanaIa~~YSllQl~~~iy~L~~gr~l~~~~~  225 (262)
                      |+||+++++++++|+++|+||+|+.+.       +++|+|+++|+|+|++|+|+|+|+++|++++++.+.+++..    .
T Consensus         1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~----~   76 (154)
T TIGR01569         1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVF----F   76 (154)
T ss_pred             CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch----h
Confidence            479999999999999999999999853       47999999999999999999999999999999998877754    4


Q ss_pred             ccceEEechHHHHHHHHHHhhhhhhhhhh
Q 040222          226 RQPFDFFMDQILAYLLISASSAAATRVDD  254 (262)
Q Consensus       226 ~awf~FigDQVlAYLLlSAASAAAaivdd  254 (262)
                      ..|++|++||+++|||+||++||+++.+.
T Consensus        77 ~~~~~f~~D~v~~~Ll~sa~sAA~av~~l  105 (154)
T TIGR01569        77 KLIALFFLDLVMLALLSSGTSAAAAVAYV  105 (154)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999654

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.

>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain

Probab=97.83  E-value=9.8e-05  Score=59.08  Aligned_cols=100  Identities=21%  Similarity=0.227  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccceehhHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccce
Q 040222          150 FANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPF  229 (262)
Q Consensus       150 ia~LvLRlla~vfslaSl~VMaTnkqt~~~~a~Fsd~~AFrYLVaanaIa~~YSllQl~~~iy~L~~gr~l~~~~~~awf  229 (262)
                      ....+||++|++++++.+.+++....+... .......+..|.+.+.++..+|++.-++...+. ...   .......++
T Consensus         4 s~~~ilR~lq~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~---~~~~~~~~~   78 (144)
T PF01284_consen    4 SPSGILRILQLVFALIIFGLVASSIATGSQ-IYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS-LKY---RPRIPWPLV   78 (144)
T ss_pred             cHhHHHHHHHHHHHHHHHHHHHHHHhcccc-ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-Hhc---ccccccchh
Confidence            346899999999999999999988643221 345677889999999999999999988887665 111   123455677


Q ss_pred             EEechHHHHHHHHHHhhhhhhhhhh
Q 040222          230 DFFMDQILAYLLISASSAAATRVDD  254 (262)
Q Consensus       230 ~FigDQVlAYLLlSAASAAAaivdd  254 (262)
                      +++.|.+++.|.++++++.+.-..+
T Consensus        79 ~~~~~~v~~il~l~a~~~~a~~~~~  103 (144)
T PF01284_consen   79 EFIFDAVFAILWLAAFIALAAYLSD  103 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8999999999999988887755433

The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00