Citrus Sinensis ID: 040237

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MGLSLSFFSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccccccccccccccEEEEEcccccccccccccccccccccEEcccccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccHHHHHHccccccEEEccccccccccccccccccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccEEccccccccccccccccccccEEEEccEEEccccccccccHHccccccEEEccccccccccccccHccccccEEEEccccccccccccHHHcccccEEEEcccccccccccccccccHHHHHHHHHcccEEEcccccccccccccHHcccccccEEEcccccccc
Coil and Loop (DISEMBL)
MGLSLSFFSIFVLFVFSLIIFNFatanfstassvlpichddERSALLQFKEgliinvpieeshhnypwsyecrpkvaswkqgeaaskvPSTLAAAFSILSILSgnlagndfrypeippeianlsrlsylnlsdsfftgqipSEILELSNLvsldlsgngysggflELGKTSLTNLVQKLTNletlnlgrvlifntpiphnlgnlsslrFLSLQNCLVQG
Flexible Loop (DISEMBL)
MGLSLSFFSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG
Low Complexity Region (SEG)
MGlslsffsifvlfvfsliifNFATANFSTASSVLPICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG
Disordered region (IsUnstruct)
****LSFFSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV**
Disordered Region (DISOPRED)
******F*SIFVLFVFSLIIFNFATANFS***********DERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ*
Disordered Region (DISEMBL)
MGLSLSFFSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKV************PSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG
Disordered Region (DISPRO)
*GLSLSFFSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC****
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLSLSFFSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q6XAT2	967	LRR receptor-like serine/	no	no	0.442	0.100	0.403	3e-08
Q9C9H7	847	Receptor-like protein 12	no	no	0.840	0.217	0.312	5e-08
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.511	0.093	0.358	1e-07
C0LGG8	1038	Probable LRR receptor-lik	no	no	0.794	0.167	0.325	2e-07
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.438	0.087	0.398	3e-07
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.621	0.119	0.339	3e-07
Q00874	372	DNA-damage-repair/tolerat	no	no	0.598	0.352	0.331	4e-07
Q9SYQ8	980	Receptor protein kinase C	no	no	0.579	0.129	0.268	7e-07
Q9SGP2	996	Receptor-like protein kin	no	no	0.447	0.098	0.392	7e-07
O65440	992	Leucine-rich repeat recep	no	no	0.470	0.103	0.360	8e-07

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 12/109 (11%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           N+ GN F    +P E  NL  L+YLNLS + F G+IP+E+  + NL +LDLSGN +SG  
Sbjct: 390 NVHGN-FLSGAVPLEFRNLGSLTYLNLSSNSFKGKIPAELGHIINLDTLDLSGNNFSGSI 448

Query: 165 -LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
            L LG          L +L  LNL R  + N  +P   GNL S++ + +
Sbjct: 449 PLTLG---------DLEHLLILNLSRNHL-NGTLPAEFGNLRSIQIIDV 487

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 40/224 (17%)

Query: 8   FSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIINVPIEESHH--- 64
           FS  ++   SL++        S ASS    C DD+R ALL+F+       PI  S H   
Sbjct: 11  FSSRIIIFLSLLVH-------SLASSSPHFCRDDQRDALLEFRGEF----PINASWHIMN 59

Query: 65  --NYPW--SYEC---RPKVASWKQGEAAS-KVPSTL--------AAAFSILSILSGNLAG 108
               PW  S +C        + K G+  S  +P+T         ++ F +  +   +L  
Sbjct: 60  QWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTN 119

Query: 109 NDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG 168
            +  Y EIP  + NLS L+ +NL  + F G+IP+ I  L+ L  L L+ N  +G      
Sbjct: 120 CNL-YGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEI---- 174

Query: 169 KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
            +SL NL  +L NLE  +  R++     IP ++G+L  LR LSL
Sbjct: 175 PSSLGNL-SRLVNLELFS-NRLV---GKIPDSIGDLKQLRNLSL 213

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 19/131 (14%)

Query: 106 LAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF- 164
           LAGN F   +IPPEI NL  L  L+LS +  TG +P  + EL  L+ LDLS N +SG   
Sbjct: 96  LAGNQFSG-KIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLP 154

Query: 165 ------------LELGKTSLTNLVQ----KLTNLETLNLGRVLIFNTPIPHNLGNLSSLR 208
                       L++   SL+  +     KL+NL  L +G +  F+  IP  +GN+S L+
Sbjct: 155 PSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMG-LNSFSGQIPSEIGNISLLK 213

Query: 209 FLSLQNCLVQG 219
             +  +C   G
Sbjct: 214 NFAAPSCFFNG 224

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGG8|Y5343_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 32/206 (15%)

Query: 15  VFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIINVPIEE-SHHNYPWSYECR 73
           V+ L++      NF + + +LP   D+ ++    F++     V IE  S  +  W++   
Sbjct: 11  VYVLLLIFVCLENFGSNAQLLP--EDEVQTLRTIFRKLQNQTVNIERTSCSDQNWNFVV- 67

Query: 74  PKVASWKQGEAASKVPS---TLAAAFSILSILS-GNLAGNDFRYPEI-PPEIANLSRLSY 128
                    E+AS  P+   T    F+  S+    N+    F  P I PPE  NL+RL  
Sbjct: 68  ---------ESASNSPTSNITCDCTFNASSVCRVTNIQLKSFSLPGIFPPEFGNLTRLRE 118

Query: 129 LNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF-LELGK-TSLTNLVQKLTNLETLN 186
           ++LS +F  G IP+ + ++  L  L + GN  SG F  +LG  T+LT++     NLET N
Sbjct: 119 IDLSRNFLNGTIPTTLSQIP-LEILSVIGNRLSGPFPPQLGDITTLTDV-----NLET-N 171

Query: 187 LGRVLIFNTPIPHNLGNLSSLRFLSL 212
           L     F  P+P NLGNL SL+ L L
Sbjct: 172 L-----FTGPLPRNLGNLRSLKELLL 192

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 57/108 (52%), Gaps = 12/108 (11%)

Query: 106 LAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFL 165
           LA N+F   EIPPEI NL+++   N+S +  TG IP E+     +  LDLSGN +SG   
Sbjct: 506 LANNNF-TGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIA 564

Query: 166 -ELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
            ELG         +L  LE L L    +    IPH+ G+L+ L  L L
Sbjct: 565 QELG---------QLVYLEILRLSDNRL-TGEIPHSFGDLTRLMELQL 602

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 23/159 (14%)

Query: 72  CRP--KVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYL 129
           CR   +V   ++   + + P  L    +ILS+ + +++GN F   EIPP+I NL RL  L
Sbjct: 306 CRTGLQVLDLQENRISGRFPLWLT---NILSLKNLDVSGNLFSG-EIPPDIGNLKRLEEL 361

Query: 130 NLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG------GFLE------LGKTSLTNLVQ 177
            L+++  TG+IP EI +  +L  LD  GN   G      G+++      LG+ S +  V 
Sbjct: 362 KLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVP 421

Query: 178 ----KLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
                L  LE LNLG   + N   P  L  L+SL  L L
Sbjct: 422 SSMVNLQQLERLNLGENNL-NGSFPVELMALTSLSELDL 459

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 23/154 (14%)

Query: 76  VASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSF 135
           +A WK      ++P  + +  S L IL  +LAGN     EIP EI  LS+L+ LNL+++ 
Sbjct: 117 LADWKG--ITGEIPPCITSLAS-LRIL--DLAGNKITG-EIPAEIGKLSKLAVLNLAENQ 170

Query: 136 FTGQIPSEILELSNLVSLDLSGNGYSG------GFLE------LGKTSLTNLVQK----L 179
            +G+IP+ +  L  L  L+L+ NG +G      G L+      LG+  LT  + +    +
Sbjct: 171 MSGEIPASLTSLIELKHLELTENGITGVIPADFGSLKMLSRVLLGRNELTGSIPESISGM 230

Query: 180 TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQ 213
             L  L+L +  I   PIP  +GN+  L  L+L 
Sbjct: 231 ERLADLDLSKNHI-EGPIPEWMGNMKVLSLLNLD 263

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 11/138 (7%)

Query: 82  GEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIP 141
           G      P  +  A   L +L  +   N+F   ++PPE++ L +L YL+   +FF+G+IP
Sbjct: 129 GNLTGTFPGEILKAMVDLEVL--DTYNNNFN-GKLPPEMSELKKLKYLSFGGNFFSGEIP 185

Query: 142 SEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNL 201
               ++ +L  L L+G G SG             + +L NL  + +G    +   +P   
Sbjct: 186 ESYGDIQSLEYLGLNGAGLSG--------KSPAFLSRLKNLREMYIGYYNSYTGGVPPEF 237

Query: 202 GNLSSLRFLSLQNCLVQG 219
           G L+ L  L + +C + G
Sbjct: 238 GGLTKLEILDMASCTLTG 255

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 53/107 (49%), Gaps = 9/107 (8%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           NL+ N F    IPPE  NL+ L  + L++    GQIP  + +LS LV LDL+ N    G 
Sbjct: 186 NLSYNPFSPSRIPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSKLVDLDLALNDLV-GH 244

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLS 211
           +      LTN+VQ    +E  N          IP  LGNL SLR L 
Sbjct: 245 IPPSLGGLTNVVQ----IELYNNS----LTGEIPPELGNLKSLRLLD 283

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score = 53.9 bits (128), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 19/122 (15%)

Query: 116 IPPEIANLS-RLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174
           I PEI+ LS  L +L++S + F+G++P EI ELS L  L++S N + G     G + +T 
Sbjct: 92  ISPEISRLSPSLVFLDISSNSFSGELPKEIYELSGLEVLNISSNVFEGELETRGFSQMTQ 151

Query: 175 LV-----------------QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217
           LV                   LT LE L+LG    F+  IP + G+  SL+FLSL    +
Sbjct: 152 LVTLDAYDNSFNGSLPLSLTTLTRLEHLDLGGN-YFDGEIPRSYGSFLSLKFLSLSGNDL 210

Query: 218 QG 219
           +G
Sbjct: 211 RG 212

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
359485822	993	PREDICTED: receptor-like protein 12-like	0.922	0.203	0.405	7e-28
224140517	979	predicted protein [Populus trichocarpa]	0.931	0.208	0.412	3e-25
224140505	993	predicted protein [Populus trichocarpa]	0.931	0.205	0.400	5e-25
224154826	238	predicted protein [Populus trichocarpa]	0.858	0.789	0.390	2e-24
224128143	923	predicted protein [Populus trichocarpa]	0.858	0.203	0.390	4e-24
359490156	886	PREDICTED: receptor-like protein 12-like	0.785	0.194	0.409	5e-24
224140511	894	predicted protein [Populus trichocarpa]	0.808	0.197	0.431	2e-23
224140509	961	predicted protein [Populus trichocarpa]	0.780	0.177	0.433	2e-22
147866761	859	hypothetical protein VITISV_021527 [Viti	0.936	0.238	0.397	2e-22
224140513	947	predicted protein [Populus trichocarpa]	0.936	0.216	0.325	4e-21

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 132/244 (54%), Gaps = 42/244 (17%)

Query: 6   SFFSIFVLFVFSLIIFNFATANFSTASSVL-PICHDDERSALLQFKEGLIINVPIEESHH 64
           S   +F+L  F  ++ +F     +++SSV  P+CHD+E SALLQFK+  +I+    E  +
Sbjct: 3   SILYLFILMRFLALLSSFHLIVTNSSSSVQQPLCHDNESSALLQFKQSFLIDEYASEDSY 62

Query: 65  NYPWSYECRPKVASWKQGEAASKVPS----------------TLAAA------------F 96
            YP       KVA+WK     S   S                 LA++            F
Sbjct: 63  AYP-------KVATWKSHGEGSDCCSWDGVECDRETGHVIGLHLASSCLYGSINSSSTLF 115

Query: 97  SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEI-LELSNLVSLDL 155
           S++ +   +L+ NDF Y EIP  ++ LSRL  LNLSDS F+GQIPSE+ L LS LV LDL
Sbjct: 116 SLVHLRRLDLSDNDFNYSEIPHGVSQLSRLRSLNLSDSQFSGQIPSEVLLALSKLVFLDL 175

Query: 156 SGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
           SGN      L+L K  L NLVQ LT  + L+L +V I +T IPH L NLSSL  L L+ C
Sbjct: 176 SGN----PMLQLQKHGLRNLVQNLTLFKKLHLSQVNISST-IPHALANLSSLTSLRLREC 230

Query: 216 LVQG 219
            + G
Sbjct: 231 GLHG 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/247 (41%), Positives = 137/247 (55%), Gaps = 43/247 (17%)

Query: 1   MGLSLSFFSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIINVPIE 60
           M   + F ++ +LF+FSL +F+       ++ S+ P+CH+DE  ALLQ KE L+IN    
Sbjct: 1   MASPVCFLTMRMLFLFSLSLFHLRAC--YSSPSMQPLCHEDESYALLQIKESLVIN---- 54

Query: 61  ESHHNYPWSYECRPKVASWK----------------QGEAASKVPSTLAAAFSILSILSG 104
           ES  + P +Y   PKVASW+                 G++   +   L+++    SI S 
Sbjct: 55  ESASSDPSAY---PKVASWRVDGESGDCCSWDGVECDGDSGHVIGLDLSSSCLYGSIDSN 111

Query: 105 N------------LAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS 152
           +            LA NDF   EIP EI NLSRL  LNLS S F+GQIP+EILELS LVS
Sbjct: 112 SSLFRLVLLRRLHLADNDFNKSEIPSEIRNLSRLFDLNLSMSGFSGQIPAEILELSKLVS 171

Query: 153 LDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
           LDL  N      L+L K  L +LV+ LTNLE L+L  V I +  +P  + NLSSL  L L
Sbjct: 172 LDLGVNS-----LKLQKPGLQHLVEALTNLEVLHLTGVNI-SAKVPQIMTNLSSLSSLFL 225

Query: 213 QNCLVQG 219
           ++C +QG
Sbjct: 226 RDCGLQG 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140505|ref|XP_002323623.1| predicted protein [Populus trichocarpa] gi|222868253|gb|EEF05384.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 99/247 (40%), Positives = 135/247 (54%), Gaps = 43/247 (17%)

Query: 1   MGLSLSFFSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIINVPIE 60
           M   + F +I +LF+  L +F+       ++SS+ P+CH+DE  ALLQ KE L IN    
Sbjct: 1   MASPVCFLTIRMLFLVLLSLFHLRAC--YSSSSMQPLCHEDESYALLQLKESLAIN---- 54

Query: 61  ESHHNYPWSYECRPKVASWK----------------QGEAASKVPSTLAAA--------- 95
           ES  + P +Y   PKVASW+                 G++   +   L+++         
Sbjct: 55  ESASSDPSAY---PKVASWRVDGESGDCCSWDGVECDGDSGHVIGLDLSSSCLHGSINSN 111

Query: 96  ---FSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS 152
              F ++ +   NL+GNDF   ++P EI NLSRL  LNLS S F+GQIP+EILELS LVS
Sbjct: 112 SSLFHLVQLRRLNLSGNDFNNSKMPSEIRNLSRLFDLNLSYSNFSGQIPAEILELSKLVS 171

Query: 153 LDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
           LDL  N      L+L K  L +LV+ LTNLE L+L  V I +  +P  + NLSSL  L L
Sbjct: 172 LDLRWNS-----LKLRKPGLQHLVEALTNLEVLHLSGVSI-SAEVPQIMANLSSLSSLFL 225

Query: 213 QNCLVQG 219
             C +QG
Sbjct: 226 SYCGLQG 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224154826|ref|XP_002337526.1| predicted protein [Populus trichocarpa] gi|222839515|gb|EEE77852.1| predicted protein [Populus trichocarpa]

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 119/228 (52%), Gaps = 40/228 (17%)

Query: 23  FATANFSTASSVLPICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWK-Q 81
           F T  F   ++V P+CH  ERSALL F +   I+     S + YP       K ASWK +
Sbjct: 14  FLTLLFLLINTVQPLCHGVERSALLHFMQSFSISNNASISSYAYP-------KTASWKIR 66

Query: 82  GEAAS----------------------------KVPSTLAAAFSILSILSGNLAGNDFRY 113
           GE++                              + ST ++ F ++ +   NL GNDF Y
Sbjct: 67  GESSDCCLWDGVECDEDTGYVIGLDLGGSSLHGSINST-SSLFQLVHLRRLNLGGNDFNY 125

Query: 114 PEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG--FLELGKTS 171
            ++P  +A LS L+YLNLS+S F G++P EI ELS+L SLDL  N  S     LELG   
Sbjct: 126 SQVPSRLALLSSLTYLNLSNSMFYGEVPLEITELSHLTSLDLGRNVDSSARKLLELGSFD 185

Query: 172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
           L  L Q  T LE L+L  V I +T +P  L NLSSL FL+L++C +QG
Sbjct: 186 LRRLAQNFTGLEQLDLSSVNISST-VPDALANLSSLTFLNLEDCNLQG 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128143|ref|XP_002329092.1| predicted protein [Populus trichocarpa] gi|222869761|gb|EEF06892.1| predicted protein [Populus trichocarpa]

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 119/228 (52%), Gaps = 40/228 (17%)

Query: 23  FATANFSTASSVLPICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWK-Q 81
           F T  F   ++V P+CH  ERSALL F +   I+     S + YP       K ASWK +
Sbjct: 14  FLTLLFLLINTVQPLCHGVERSALLHFMQSFSISNNASISSYAYP-------KTASWKIR 66

Query: 82  GEAAS----------------------------KVPSTLAAAFSILSILSGNLAGNDFRY 113
           GE++                              + ST ++ F ++ +   NL GNDF Y
Sbjct: 67  GESSDCCLWDGVECDEDTGYVIGLDLGGSSLHGSINST-SSLFQLVHLRRLNLGGNDFNY 125

Query: 114 PEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG--FLELGKTS 171
            ++P  +A LS L+YLNLS+S F G++P EI ELS+L SLDL  N  S     LELG   
Sbjct: 126 SQVPSRLALLSSLTYLNLSNSMFYGEVPLEITELSHLTSLDLGRNVDSSARKLLELGSFD 185

Query: 172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
           L  L Q  T LE L+L  V I +T +P  L NLSSL FL+L++C +QG
Sbjct: 186 LRRLAQNFTGLEQLDLSSVNISST-VPDALANLSSLTFLNLEDCNLQG 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/215 (40%), Positives = 113/215 (52%), Gaps = 43/215 (20%)

Query: 36  PICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWK---QGEAASKVPS-- 90
           P+CHD ERSALLQFK+  +I+         YP       KVA WK   +GE  S   S  
Sbjct: 12  PLCHDSERSALLQFKQSFLIDGHASGDPSAYP-------KVAMWKSHGEGEEGSDCCSWD 64

Query: 91  --------------TLAAA------------FSILSILSGNLAGNDFRYPEIPPEIANLS 124
                          LA++            FS++ +   +L+ NDF Y +IP  +  LS
Sbjct: 65  GVECDRETGHVIGLHLASSCLYGSINSNSTLFSLVHLRRLDLSDNDFNYSQIPFGVGQLS 124

Query: 125 RLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLET 184
           RL  L+LS   F GQIPSE+L LS LV L+LS N      L+L K  L  LVQ LT+L+ 
Sbjct: 125 RLRSLDLSSDRFAGQIPSELLALSKLVFLNLSAN----PMLQLQKPGLRYLVQNLTHLKE 180

Query: 185 LNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
           L+L +V I +T IPH L NLSSLR L L+ C + G
Sbjct: 181 LHLRQVNISST-IPHELANLSSLRTLFLRECGLHG 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140511|ref|XP_002323626.1| predicted protein [Populus trichocarpa] gi|222868256|gb|EEF05387.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/218 (43%), Positives = 121/218 (55%), Gaps = 41/218 (18%)

Query: 30  TASSVLPICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWK--------- 80
           ++ S+ P+CHDDE  ALLQFKE L+IN    ES    P +Y   PKVASWK         
Sbjct: 28  SSPSMQPLCHDDESYALLQFKESLVIN----ESASYEPSAY---PKVASWKADGERGNCC 80

Query: 81  -------QGEAASKVPSTLAAA------------FSILSILSGNLAGNDFRYPEIPPEIA 121
                   G++   +   L+++            F ++ +   NLA NDF   +IP  I 
Sbjct: 81  SWDGVECDGDSGHVIGLDLSSSCLYGSIDSNSSLFHLVQLRRLNLADNDFNNSKIPSGIR 140

Query: 122 NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTN 181
           NLSRL  LNL+   F+GQIP+EILELS LVSLDL  N      L+L    L +LV+ LTN
Sbjct: 141 NLSRLVDLNLTMDGFSGQIPAEILELSELVSLDLGLNP-----LKLQNPGLQHLVEALTN 195

Query: 182 LETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
           LE L+L  V I +  IP  + NLSSL  LSL+NC +QG
Sbjct: 196 LEVLHLSGVNI-SAKIPQIMTNLSSLSSLSLRNCRLQG 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/212 (43%), Positives = 117/212 (55%), Gaps = 41/212 (19%)

Query: 36  PICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWK-QGEAASKVP----- 89
           P+C+D+E  ALLQFKE L+IN    ES  +Y  S  C PKVASWK  GE+          
Sbjct: 3   PLCNDEESHALLQFKESLVIN----ESASSY--SSAC-PKVASWKVDGESGDCCSWEGVE 55

Query: 90  ----------------------STLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLS 127
                                  + ++ F ++ +   NLA NDF   +IP EI NL RL 
Sbjct: 56  CDRDSGHVIGLDLSSSCLHGSIDSNSSLFHLVQLRRLNLADNDFNNSKIPSEIRNLPRLF 115

Query: 128 YLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNL 187
            LNLS + FTGQIP+EILELS LVSLDL  N      L+L K  L +LV+ LTNLE L+L
Sbjct: 116 DLNLSITGFTGQIPAEILELSKLVSLDLGLNS-----LKLQKPGLQHLVEALTNLEVLHL 170

Query: 188 GRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
             V I +  +P  + NLSSL  L L++C +QG
Sbjct: 171 SEVNI-SAKVPQVMTNLSSLSSLFLRDCGLQG 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866761|emb|CAN80989.1| hypothetical protein VITISV_021527 [Vitis vinifera]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/249 (39%), Positives = 136/249 (54%), Gaps = 44/249 (17%)

Query: 1   MGLSLSFFSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIINVPIE 60
           MG +L  F +F+ F+     F     N S+A    P+CH  E SALLQFK+  +I    +
Sbjct: 1   MGSALYLF-MFMRFLLLPSSFYLMVTNASSAMQH-PLCHXSESSALLQFKQSFLI----D 54

Query: 61  ESHHNYPWSYECRPKVASWK---QGE------------------------AASKVPSTLA 93
           E   + P +Y   PKV++WK   +GE                        A+S +  ++ 
Sbjct: 55  EDASDDPSAY---PKVSTWKSHGEGEESDCCSWDGVECDKETGHVIGLHLASSCLYGSIN 111

Query: 94  AA---FSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNL 150
           ++   FS++ + + +L+ NDF Y  +P ++  LSRL  LNLS S F+GQIPSE+L LS L
Sbjct: 112 SSNTLFSLVHLSTLDLSDNDFNYSXVPHKVGQLSRLRSLNLSGSKFSGQIPSELLALSKL 171

Query: 151 VSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFL 210
           V LDLS N      LEL K  L NLVQ LT+L+TL+L  V I +T IPH L NLSSL  L
Sbjct: 172 VFLDLSRN----PMLELQKPGLRNLVQNLTHLKTLHLNLVNISST-IPHVLANLSSLTSL 226

Query: 211 SLQNCLVQG 219
            L+ C + G
Sbjct: 227 LLRGCGLYG 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140513|ref|XP_002323627.1| predicted protein [Populus trichocarpa] gi|222868257|gb|EEF05388.1| predicted protein [Populus trichocarpa]

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 130/270 (48%), Gaps = 65/270 (24%)

Query: 1   MGLSLSFFSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIINVPIE 60
           M  S+ F ++ +L +F L  F+    +  ++ S+ P+CHD+E  AL+QFKE L+I     
Sbjct: 1   MASSVCFLTMRMLSLFLLSFFHLRACH--SSPSMQPLCHDEESHALMQFKESLVI----- 53

Query: 61  ESHHNYPWSYECRPKVASWK----------------QGEAASKVPSTLAAA--------- 95
             H +  +     PKVASW                  G++   +   L+++         
Sbjct: 54  --HRSASYDPAAYPKVASWSVDRESGDCCSWDGVECDGDSGHVIGLDLSSSCLYGSIDSN 111

Query: 96  ---FSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS 152
              F ++ +   +LA NDF   +IP EI NLSRL  L+LS S F+GQIP+EILELS LVS
Sbjct: 112 SSLFHLVQLRRLDLADNDFNNSKIPSEIRNLSRLFDLDLSYSSFSGQIPAEILELSKLVS 171

Query: 153 LDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNL---------------GRVLI----- 192
           LDL  N      L+L K  L +LV+ L NL  L++               G  L      
Sbjct: 172 LDLGWNS-----LKLQKPGLEHLVKALINLRFLSIQHNPYLSGYFPEIHWGSQLQTLFLA 226

Query: 193 ---FNTPIPHNLGNLSSLRFLSLQNCLVQG 219
              F+  +P ++GNL SL+   + +C   G
Sbjct: 227 GTSFSGKLPESIGNLKSLKEFDVGDCNFSG 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.849	0.182	0.32	7.1e-16
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.575	0.126	0.379	6.1e-12
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.570	0.132	0.376	5.2e-11
TAIR|locus:2015504	890	AT1G62950 [Arabidopsis thalian	0.470	0.115	0.410	6.2e-11
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.817	0.211	0.326	7.4e-11
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.456	0.104	0.427	1.4e-10
TAIR|locus:2182855	967	ERL2 "ERECTA-like 2" [Arabidop	0.506	0.114	0.365	1.8e-10
TAIR|locus:2046535	740	RLP28 "receptor like protein 2	0.767	0.227	0.292	2.7e-10
UNIPROTKB|Q5Z9N5	994	P0481E08.42 "Os06g0717200 prot	0.506	0.111	0.359	5.1e-10
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.502	0.107	0.422	5.3e-10

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 7.1e-16, P = 7.1e-16
 Identities = 64/200 (32%), Positives = 100/200 (50%)

Query:    32 SSVLPICHDDERSALLQFKE--GLIINVPIEESHHNYPWS-YECRPKVASWKQGEAAS-- 86
             S+   +CH D++ ALL FK   G++ +           W    C  K  +    + +S  
Sbjct:    68 SATQHLCHSDQKDALLDFKNEFGMVDSKSWVNKSDCCSWDGITCDAKSGNVIGLDLSSIF 127

Query:    87 ---KVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSE 143
                ++ S  ++ F +  +   NLA N+F    IP E   L+ L  L+LS S  +GQIP  
Sbjct:   128 LYGQLKSN-SSLFKLRHLRDLNLANNNFNNSPIPAEFDKLTGLERLDLSQSSLSGQIPIN 186

Query:   144 ILELSNLVSLDLSGNGYSGG----FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPH 199
             +L+L+ LVSLDLS + + G     +L + K+ L  L + L NL  L++  V I ++ IP 
Sbjct:   187 LLQLTKLVSLDLSSSDFFGDESFHYLSIDKSFLPLLARNLRNLRELDMSYVKI-SSEIPE 245

Query:   200 NLGNLSSLRFLSLQNCLVQG 219
                N+ SLR L+L  C + G
Sbjct:   246 EFSNIRSLRSLNLNGCNLFG 265

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 6.1e-12, P = 6.1e-12
 Identities = 49/129 (37%), Positives = 72/129 (55%)

Query:    93 AAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS 152
             ++ F +  + S NLA N+F    IP E +   RL  LNLS S F+G I  ++L+L+NLVS
Sbjct:   117 SSLFRLQHLQSVNLAYNNFTNSPIPAEFSKFMRLERLNLSRSSFSGHISIKLLQLTNLVS 176

Query:   153 LDLSGN-GYSGGFLELGKTSLTNLVQ-KLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFL 210
             LDLS +  YS   L + K    +L+     NL  L++  V I ++ IP     + SLR L
Sbjct:   177 LDLSSSFPYSPSSLSIEKPLFLHLLALNFMNLRELDMSSVDI-SSAIPIEFSYMWSLRSL 235

Query:   211 SLQNCLVQG 219
             +L+ C + G
Sbjct:   236 TLKGCNLLG 244

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 52/138 (37%), Positives = 77/138 (55%)

Query:    75 KVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDS 134
             +V    Q +   ++PS++     + S+   +L+ N F    IP  I NLSRL+ L+LS +
Sbjct:   128 RVLDLTQNDLDGEIPSSIGNLSHLTSL---HLSYNQF-LGLIPSSIENLSRLTSLHLSSN 183

Query:   135 FFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN 194
              F+GQIPS I  LS+L SL+LS N +SG       +S+ NL    +NL  L+L     F 
Sbjct:   184 QFSGQIPSSIGNLSHLTSLELSSNQFSGQI----PSSIGNL----SNLTFLSLPSNDFFG 235

Query:   195 TPIPHNLGNLSSLRFLSL 212
               IP ++GNL+ L +L L
Sbjct:   236 Q-IPSSIGNLARLTYLYL 252

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2015504 AT1G62950 [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 6.2e-11, P = 6.2e-11
 Identities = 46/112 (41%), Positives = 64/112 (57%)

Query:   108 GNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLEL 167
             G++F   ++P E+ NL  L  LNL +    G+IP ++     L+ LD+SGNG  G   E+
Sbjct:   345 GDNFIDGKLPLELGNLEYLQVLNLHNLNLVGEIPEDLSNCRLLLELDVSGNGLEG---EI 401

Query:   168 GKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
              K    NL+  LTNLE L+L R  I    IP NLG+LS ++FL L   L+ G
Sbjct:   402 PK----NLLN-LTNLEILDLHRNRISGN-IPPNLGSLSRIQFLDLSENLLSG 447

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 67/205 (32%), Positives = 101/205 (49%)

Query:    29 STASSVLPICHDDERSALLQFKEGLIINVPIEESHH-NYPW--SYEC---RPKVASWKQG 82
             S ASS    C DD+R ALL+F+    IN      +    PW  S +C        + K G
Sbjct:    25 SLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSG 84

Query:    83 EAAS-KVPSTL--------AAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSD 133
             +  S  +P+T         ++ F +  +   +L   +  Y EIP  + NLS L+ +NL  
Sbjct:    85 QVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNL-YGEIPSSLGNLSHLTLVNLYF 143

Query:   134 SFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIF 193
             + F G+IP+ I  L+ L  L L+ N  +G   E+  +SL NL  +L NLE  +  R++  
Sbjct:   144 NKFVGEIPASIGNLNQLRHLILANNVLTG---EI-PSSLGNL-SRLVNLELFS-NRLV-- 195

Query:   194 NTPIPHNLGNLSSLRFLSL-QNCLV 217
                IP ++G+L  LR LSL  N L+
Sbjct:   196 -GKIPDSIGDLKQLRNLSLASNNLI 219

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 47/110 (42%), Positives = 64/110 (58%)

Query:   105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
             +L+ N F   +I   I NLSRL+YLNL D+ F+GQ PS I  LS+L  LDLS N + G F
Sbjct:   151 DLSSNHFS-GQILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDLSYNRFFGQF 209

Query:   165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
                      + +  L++L TL+L     F+  IP ++GNLS+L  L L N
Sbjct:   210 --------PSSIGGLSHLTTLSLFSNK-FSGQIPSSIGNLSNLTTLDLSN 250

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2182855 ERL2 "ERECTA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 46/126 (36%), Positives = 69/126 (54%)

Query:    88 VPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILEL 147
             +PS +++  ++      N+ GN F    +P E  NL  L+YLNLS + F G+IP+E+  +
Sbjct:   376 IPSNISSCAALNQF---NVHGN-FLSGAVPLEFRNLGSLTYLNLSSNSFKGKIPAELGHI 431

Query:   148 SNLVSLDLSGNGYSGGF-LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSS 206
              NL +LDLSGN +SG   L LG          L +L  LNL R  + N  +P   GNL S
Sbjct:   432 INLDTLDLSGNNFSGSIPLTLGD---------LEHLLILNLSRNHL-NGTLPAEFGNLRS 481

Query:   207 LRFLSL 212
             ++ + +
Sbjct:   482 IQIIDV 487

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2046535 RLP28 "receptor like protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 52/178 (29%), Positives = 76/178 (42%)

Query:    35 LPICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAASKVPSTLAA 94
             L  C   +  A  QFK     +      H N  W       V   +     S   +  ++
Sbjct:    36 LVACRSHQIQAFTQFKNEFDTHRCNHSDHSNGVWCDNSTGVVTKLQLNACLSGTLNPNSS 95

Query:    95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLD 154
              F    +   NL+ N+F     P E  NL+++  L+LS + FTGQ+PS    LS L  L 
Sbjct:    96 LFWFHQLRFLNLSHNNFTSTSFPSEFGNLNKVEVLDLSFNSFTGQVPSSFSNLSQLTELH 155

Query:   155 LSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
             LS N  +GGF +         VQ LTNL  L+      F+  +P +L  +  L +L+L
Sbjct:   156 LSNNQLTGGFPQ---------VQNLTNLSHLDFENNK-FSGTVPSSLLMMPFLSYLNL 203

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

UNIPROTKB|Q5Z9N5 P0481E08.42 "Os06g0717200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 156 (60.0 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 46/128 (35%), Positives = 71/128 (55%)

Query:    87 KVPSTLA--AAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEI 144
             ++P  +    A   LS+ S N +G       +PPEI NL  LS LN+S +  TG IP E+
Sbjct:   475 RIPPAIGNLPALQTLSLESNNFSG------ALPPEIGNLKNLSRLNVSGNALTGAIPDEL 528

Query:   145 LELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNL 204
             +  ++L ++DLS NG+SG   E    S+T+L  K+  L TLN+ R  +    +P  + N+
Sbjct:   529 IRCASLAAVDLSRNGFSGEIPE----SITSL--KI--LCTLNVSRNRLTGE-LPPEMSNM 579

Query:   205 SSLRFLSL 212
             +SL  L +
Sbjct:   580 TSLTTLDV 587

GO:0010080 "regulation of floral meristem growth" evidence=IMP

GO:0048833 "specification of floral organ number" evidence=IMP

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 5.3e-10, P = 5.3e-10
 Identities = 52/123 (42%), Positives = 68/123 (55%)

Query:    99 LSIL-SGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSG 157
             LS L S NLA N F +  IP E+ NL RL YLN+S++ F G IP  +   S+L +LDLS 
Sbjct:   104 LSFLRSLNLADNFF-HGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSS 162

Query:   158 NGYSGGF-LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCL 216
             N    G  LE G  SL+ LV        L+LGR  +     P +LGNL+SL+ L      
Sbjct:   163 NHLEQGVPLEFG--SLSKLV-------LLSLGRNNLTGK-FPASLGNLTSLQMLDFIYNQ 212

Query:   217 VQG 219
             ++G
Sbjct:   213 IEG 215

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029123001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (983 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.7 bits (142), Expect = 4e-10
 Identities = 43/114 (37%), Positives = 53/114 (46%), Gaps = 15/114 (13%)

Query: 99  LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGN 158
           L ++  NL G       IP  + NL  L YL L  +  +G IP  I  L  L+SLDLS N
Sbjct: 241 LDLVYNNLTG------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Query: 159 GYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
             SG   E        LV +L NLE L+L     F   IP  L +L  L+ L L
Sbjct: 295 SLSGEIPE--------LVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQL 339

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 19/125 (15%)

Query: 96  FSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDL 155
           FS L +L  +L GN     +IP  + NL+ L +L L+ +   GQIP E+ ++ +L  + L
Sbjct: 163 FSSLKVL--DLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219

Query: 156 SGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNT---PIPHNLGNLSSLRFLSL 212
             N  SG         +   +  LT+L  L+    L++N    PIP +LGNL +L++L L
Sbjct: 220 GYNNLSGE--------IPYEIGGLTSLNHLD----LVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 213 -QNCL 216
            QN L
Sbjct: 268 YQNKL 272

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 17/108 (15%)

Query: 116 IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG----GFLELGKTS 171
           +P ++ +LS L  L LS++  +G+IP E+     LVSLDLS N  SG     F E+   S
Sbjct: 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550

Query: 172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
             +L Q   + E             IP NLGN+ SL  +++ +  + G
Sbjct: 551 QLDLSQNQLSGE-------------IPKNLGNVESLVQVNISHNHLHG 585

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 12/113 (10%)

Query: 100 SILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG 159
           S+   NL+ N+F    IP    ++  L  L+LS++  +G+IP++I   S+L  LDL GN 
Sbjct: 119 SLRYLNLSNNNFTGS-IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175

Query: 160 YSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
             G         + N +  LT+LE L L         IP  LG + SL+++ L
Sbjct: 176 LVG--------KIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYL 219

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 4/75 (5%)

Query: 88  VPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILEL 147
           +P+ ++    + SI   NL+GN  R   IPP + +++ L  L+LS + F G IP  + +L
Sbjct: 434 IPNDISKLRHLQSI---NLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 148 SNLVSLDLSGNGYSG 162
           ++L  L+L+GN  SG
Sbjct: 490 TSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 9/84 (10%)

Query: 129 LNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLG 188
           L L +    G IP++I +L +L S++LSGN   G        SL +    +T+LE L+L 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI----PPSLGS----ITSLEVLDLS 474

Query: 189 RVLIFNTPIPHNLGNLSSLRFLSL 212
               FN  IP +LG L+SLR L+L
Sbjct: 475 YNS-FNGSIPESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 19/149 (12%)

Query: 81  QGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQI 140
           Q + +  +P ++   FS+  ++S +L+ N     EIP  +  L  L  L+L  + FTG+I
Sbjct: 269 QNKLSGPIPPSI---FSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Query: 141 PSEILELSNLVSLDLSGNGYSGGF-LELGK-TSLTNLVQKLTNL-----ETL----NLGR 189
           P  +  L  L  L L  N +SG     LGK  +LT L     NL     E L    NL +
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384

Query: 190 VLIFNTP----IPHNLGNLSSLRFLSLQN 214
           +++F+      IP +LG   SLR + LQ+
Sbjct: 385 LILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 12/99 (12%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELS-NLVSLDLSGNGYSGGFLELGKTSLT 173
           +I   I  L  +  +NLS++  +G IP +I   S +L  L+LS N ++G        S+ 
Sbjct: 84  KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG--------SIP 135

Query: 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
                + NLETL+L   +  +  IP+++G+ SSL+ L L
Sbjct: 136 R--GSIPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDL 171

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 14/134 (10%)

Query: 86  SKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEIL 145
            ++P +L A  S+  +    L  N F   E+P E   L  + +L++S++   G+I S   
Sbjct: 394 GEIPKSLGACRSLRRV---RLQDNSFS-GELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449

Query: 146 ELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLS 205
           ++ +L  L L+ N + GG  +   +           LE L+L R   F+  +P  LG+LS
Sbjct: 450 DMPSLQMLSLARNKFFGGLPDSFGSK---------RLENLDLSRNQ-FSGAVPRKLGSLS 499

Query: 206 SLRFLSLQNCLVQG 219
            L  L L    + G
Sbjct: 500 ELMQLKLSENKLSG 513

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 8/77 (10%)

Query: 88  VPSTLAAAFSILSI-LSGN-LAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEIL 145
           VP  L +   ++ + LS N L+G      EIP E+++  +L  L+LS +  +GQIP+   
Sbjct: 491 VPRKLGSLSELMQLKLSENKLSG------EIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 146 ELSNLVSLDLSGNGYSG 162
           E+  L  LDLS N  SG
Sbjct: 545 EMPVLSQLDLSQNQLSG 561

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174
           ++P  ++NLS L+ L+LS +  +  +P EI  LS L  LDLS N             L +
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI---------IELLS 226

Query: 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217
            +  L NL  L L    + +  +P ++GNLS+L  L L N  +
Sbjct: 227 SLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQI 267

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.82
PLN03150	623	hypothetical protein; Provisional	99.74
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.42
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.34
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.29
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.21
PLN03150	623	hypothetical protein; Provisional	99.2
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.18
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.09
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.01
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.99
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.92
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.84
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.82
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.79
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.69
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.67
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.58
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.55
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.55
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.54
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.54
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.34
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.33
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.27
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.26
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.24
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.23
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.16
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.15
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.05
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.96
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.94
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.91
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.84
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.8
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.68
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.59
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.44
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.35
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.32
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.16
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.14
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.83
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.75
PRK15386	426	type III secretion protein GogB; Provisional	96.72
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.5
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.45
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.22
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.75
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.2
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.19
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.19
PRK15386	426	type III secretion protein GogB; Provisional	94.44
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.38
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.41
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.3
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.42
smart00370	26	LRR Leucine-rich repeats, outliers.	91.42
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.63
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	88.38
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.08

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.82  E-value=2.5e-19  Score=170.35  Aligned_cols=168  Identities=33%  Similarity=0.504  Sum_probs=110.0

Q ss_pred             CHHHHHHHHHHHhcCccCCCCcccCCCCCCCccCCCCcccccCCCCCC-------------Cccccccc-cccCCCCCEe
Q 040237           39 HDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAAS-------------KVPSTLAA-AFSILSILSG  104 (219)
Q Consensus        39 ~~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~c~-------------~l~g~lp~-l~~l~~L~~L  104 (219)
                      +++|+.||++||+++.++..     ....|....  .+|.|. |+.|.             ++.|.+++ +..+++|++|
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~-----~~~~w~~~~--~~c~w~-gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L   98 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLK-----YLSNWNSSA--DVCLWQ-GITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTI   98 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcc-----cCCCCCCCC--CCCcCc-ceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEE
Confidence            36899999999999965432     245675332  678998 77772             34566666 8888899999


Q ss_pred             ecCCCCCCCCCCchhhc-CCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcccc-C--------------
Q 040237          105 NLAGNDFRYPEIPPEIA-NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLEL-G--------------  168 (219)
Q Consensus       105 ~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~-~--------------  168 (219)
                      ++++|++.+. +|..+. .+++|++|++++|++++.+|.  +.+++|++|++++|.+++.+|.. +              
T Consensus        99 ~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~  175 (968)
T PLN00113         99 NLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV  175 (968)
T ss_pred             ECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence            9999988875 777654 677777777777766655543  23445555555555543322100 0              


Q ss_pred             -CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          169 -KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       169 -~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                       .+.+|..++++++|++|++++|.+.+ .+|..++++++|++|++++|+++
T Consensus       176 l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        176 LVGKIPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             ccccCChhhhhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEECcCCccC
Confidence             22456666667777777777777666 66667777777777777777664

>PLN03150 hypothetical protein; Provisional

Probab=99.74  E-value=3.7e-17  Score=148.61  Aligned_cols=158  Identities=27%  Similarity=0.386  Sum_probs=128.5

Q ss_pred             CCCCHHHHHHHHHHHhcCccCCCCcccCCCCCCCcc-CCCCcccccCCCCCCCccccccccccCCCCCEeecCCCCCCCC
Q 040237           36 PICHDDERSALLQFKEGLIINVPIEESHHNYPWSYE-CRPKVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYP  114 (219)
Q Consensus        36 ~~~~~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~~-~~~~~~~W~~~~~c~~l~g~lp~l~~l~~L~~L~L~~n~l~~~  114 (219)
                      ..+.++|+.||+++|+.+..+..       .+|..+ |.+..+.|. |+.|..-..     .....++.|+|++|.+.+.
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~-------~~W~g~~C~p~~~~w~-Gv~C~~~~~-----~~~~~v~~L~L~~n~L~g~  433 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR-------FGWNGDPCVPQQHPWS-GADCQFDST-----KGKWFIDGLGLDNQGLRGF  433 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc-------CCCCCCCCCCcccccc-cceeeccCC-----CCceEEEEEECCCCCcccc
Confidence            35678899999999999865421       257654 445556899 788842110     1112467899999999996


Q ss_pred             CCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCC
Q 040237          115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN  194 (219)
Q Consensus       115 ~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~  194 (219)
                       +|..+..+++|+.|++++|.+.|.+|..++.+++|+.|++++|+++|        .+|..++++++|++|++++|.+++
T Consensus       434 -ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg--------~iP~~l~~L~~L~~L~Ls~N~l~g  504 (623)
T PLN03150        434 -IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG--------SIPESLGQLTSLRILNLNGNSLSG  504 (623)
T ss_pred             -CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC--------CCchHHhcCCCCCEEECcCCcccc
Confidence             99999999999999999999999999999999999999999999965        678889999999999999999999


Q ss_pred             CCcChhhcCC-CCCCEeeccccc
Q 040237          195 TPIPHNLGNL-SSLRFLSLQNCL  216 (219)
Q Consensus       195 ~~~p~~l~~l-~~L~~L~ls~N~  216 (219)
                       .+|..++.+ .++..+++.+|.
T Consensus       505 -~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        505 -RVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             -cCChHHhhccccCceEEecCCc
Confidence             899888764 467788888875

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.58  E-value=5.8e-15  Score=140.65  Aligned_cols=118  Identities=31%  Similarity=0.435  Sum_probs=60.2

Q ss_pred             ccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC
Q 040237           90 STLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG  168 (219)
Q Consensus        90 g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~  168 (219)
                      +.+|. +..+++|++|++++|.+.+. +|..+.++++|++|++++|.+.+.+|..++++.+|+.|++++|.+++      
T Consensus       154 ~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------  226 (968)
T PLN00113        154 GEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG------  226 (968)
T ss_pred             ccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC------
Confidence            34444 55555555555555555543 55555555555555555555555555555555555555555555543      


Q ss_pred             CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          169 KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       169 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                        .+|..++++++|++|++++|.+++ .+|..++++++|++|++++|++
T Consensus       227 --~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        227 --EIPYEIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKL  272 (968)
T ss_pred             --cCChhHhcCCCCCEEECcCceecc-ccChhHhCCCCCCEEECcCCee
Confidence              334444444444445444444444 4444444444444444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.42  E-value=6.9e-15  Score=110.86  Aligned_cols=123  Identities=26%  Similarity=0.353  Sum_probs=103.6

Q ss_pred             cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCC-cccc-
Q 040237           91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG-FLEL-  167 (219)
Q Consensus        91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~-~~~~-  167 (219)
                      .+|+ +..+.+|+.|++.+|+++  ++|..++.++.|+.|++..|++. .+|..|+.++.|+.||+.+|++... +|+- 
T Consensus        47 ~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnf  123 (264)
T KOG0617|consen   47 VVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNF  123 (264)
T ss_pred             ecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcch
Confidence            4566 999999999999999998  68999999999999999999998 8999999999999999999987642 2210 


Q ss_pred             --------------CCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          168 --------------GKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       168 --------------~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                                    ....+|..++++++|+.|.+..|.+-  ++|..++.+.+|++|++.+|+++
T Consensus       124 f~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll--~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  124 FYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             hHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh--hCcHHHHHHHHHHHHhcccceee
Confidence                          01347888889999999999988884  48999999999999999998764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.34  E-value=2.2e-14  Score=108.17  Aligned_cols=113  Identities=29%  Similarity=0.446  Sum_probs=94.1

Q ss_pred             ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcc
Q 040237           92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTS  171 (219)
Q Consensus        92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~  171 (219)
                      +|.+..+.+++.|.++.|.++  .+|+.+..+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++.         .
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~---------~   93 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN---------I   93 (264)
T ss_pred             cccccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh---------c
Confidence            444777889999999999999  58999999999999999999999 99999999999999999999974         5


Q ss_pred             ccHHHhcCCCCCEEeccCccCCCCC-----------------------cChhhcCCCCCCEeeccccc
Q 040237          172 LTNLVQKLTNLETLNLGRVLIFNTP-----------------------IPHNLGNLSSLRFLSLQNCL  216 (219)
Q Consensus       172 ~p~~l~~l~~L~~L~l~~N~l~~~~-----------------------~p~~l~~l~~L~~L~ls~N~  216 (219)
                      +|..|+.++.|+.||+.+|+++...                       +|..++++++|+.|.++.|.
T Consensus        94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen   94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc
Confidence            7888888888888888888776543                       44555666666666666664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.29  E-value=1.1e-12  Score=110.23  Aligned_cols=110  Identities=31%  Similarity=0.412  Sum_probs=75.2

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccc-c
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSL-T  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~-p  173 (219)
                      +..+++|..|++++|-+.  .+|..++.+..|+.||++.|+|. .+|..+..+..++.+-.++|++         +.+ |
T Consensus       431 l~~l~kLt~L~L~NN~Ln--~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi---------~~vd~  498 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNLLN--DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQI---------GSVDP  498 (565)
T ss_pred             HHhhhcceeeecccchhh--hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccc---------cccCh
Confidence            555555555555555555  35555555555555555555555 5555555555555554455554         234 4


Q ss_pred             HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +.+++|.+|..||+.+|.+  +.+|+.+++|.+|++|++++|+|.
T Consensus       499 ~~l~nm~nL~tLDL~nNdl--q~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  499 SGLKNMRNLTTLDLQNNDL--QQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHhhhhhhcceeccCCCch--hhCChhhccccceeEEEecCCccC
Confidence            4599999999999999999  559999999999999999999885

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.21  E-value=2.5e-11  Score=93.21  Aligned_cols=110  Identities=31%  Similarity=0.369  Sum_probs=32.2

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhc-CCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIA-NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p  173 (219)
                      +.+..++++|+|++|.++.  + +.++ .+.+|+.|++++|.++ .++ .+..+++|++|++++|+++         .+.
T Consensus        15 ~~n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~---------~i~   80 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS---------SIS   80 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS------------S-C
T ss_pred             ccccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC---------ccc
Confidence            4445566777777776662  2 3444 4667777777777776 443 4556677777777777763         233


Q ss_pred             HHH-hcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          174 NLV-QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       174 ~~l-~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +.+ ..+++|++|++++|++....--..+..+++|+.|++.+|+++
T Consensus        81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            333 356677777777777654222244556677777777777653

>PLN03150 hypothetical protein; Provisional

Probab=99.20  E-value=4e-11  Score=109.38  Aligned_cols=86  Identities=35%  Similarity=0.538  Sum_probs=80.9

Q ss_pred             CCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCC
Q 040237          125 RLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNL  204 (219)
Q Consensus       125 ~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l  204 (219)
                      .++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|        .+|..++.+++|+.|++++|++++ .+|..++++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g--------~iP~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L  489 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG--------NIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQL  489 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC--------cCChHHhCCCCCCEEECCCCCCCC-CCchHHhcC
Confidence            36789999999999999999999999999999999965        688889999999999999999999 899999999


Q ss_pred             CCCCEeecccccccC
Q 040237          205 SSLRFLSLQNCLVQG  219 (219)
Q Consensus       205 ~~L~~L~ls~N~l~G  219 (219)
                      ++|++|++++|+++|
T Consensus       490 ~~L~~L~Ls~N~l~g  504 (623)
T PLN03150        490 TSLRILNLNGNSLSG  504 (623)
T ss_pred             CCCCEEECcCCcccc
Confidence            999999999999876

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.18  E-value=2.3e-12  Score=108.37  Aligned_cols=119  Identities=30%  Similarity=0.409  Sum_probs=103.6

Q ss_pred             CCCCCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhh-cCCCCcEEEccCCCC
Q 040237           83 EAASKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEIL-ELSNLVSLDLSGNGY  160 (219)
Q Consensus        83 ~~c~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~-~l~~L~~L~Ls~N~l  160 (219)
                      ++|.+.-+.+|+ ++.+.+|.-|+++.|.+.  .+| +|.++..|.++++..|.+. .+|.+.. .++++..||+..|++
T Consensus       189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~--~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl  264 (565)
T KOG0472|consen  189 DCNSNLLETLPPELGGLESLELLYLRRNKIR--FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL  264 (565)
T ss_pred             ccchhhhhcCChhhcchhhhHHHHhhhcccc--cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc
Confidence            345677888888 999999999999999988  466 7888899999999999988 8888765 889999999999997


Q ss_pred             CCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          161 SGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       161 ~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      .         ++|+.+..+++|++||+++|.+++  +|.+++++ .|+.|.+.||.+
T Consensus       265 k---------e~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  265 K---------EVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             c---------cCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeeehhhcCCch
Confidence            4         689999999999999999999987  89999999 899999999976

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.09  E-value=2.6e-11  Score=110.76  Aligned_cols=117  Identities=21%  Similarity=0.333  Sum_probs=99.7

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCC
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG  163 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~  163 (219)
                      +.++...-+ +.+.++|+.|+|++|++.  .+|+ .+.++..|+.|++|+|+++ .+|..+..+..|++|...+|++.  
T Consensus       369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~--  443 (1081)
T KOG0618|consen  369 NHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL--  443 (1081)
T ss_pred             Ccccccchhhhccccceeeeeecccccc--cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee--
Confidence            456655545 899999999999999998  4776 5889999999999999999 99999999999999999999973  


Q ss_pred             ccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccc
Q 040237          164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCL  216 (219)
Q Consensus       164 ~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~  216 (219)
                             .+| .+..++.|+.+|++.|+++...+|..... ++|++||+++|.
T Consensus       444 -------~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  444 -------SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             -------ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence                   567 78899999999999999976456654443 799999999995

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.01  E-value=6.8e-11  Score=104.67  Aligned_cols=111  Identities=27%  Similarity=0.363  Sum_probs=59.1

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..++.|+.+.++.|++....+|+.+..+..|+.||||.|++. ..|..+-.-.++..|+||+|++.         ++|.
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie---------tIPn  143 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE---------TIPN  143 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc---------cCCc
Confidence            3445555555555555543335555555555555555555555 55555555555555555555542         3432


Q ss_pred             -HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          175 -LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       175 -~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                       .+-++.-|-+||+++|.+.  .+|+.+.++..|++|++++|.+
T Consensus       144 ~lfinLtDLLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  144 SLFINLTDLLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             hHHHhhHhHhhhccccchhh--hcCHHHHHHhhhhhhhcCCChh
Confidence             2345555555555555552  3555555555555555555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.99  E-value=3.5e-11  Score=106.47  Aligned_cols=117  Identities=23%  Similarity=0.246  Sum_probs=56.4

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccc--------
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLE--------  166 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~--------  166 (219)
                      +-.+.+|..+|++.|++.  .+|+.+-++++|+.|+||+|+++ .+.-..+...+|++|++|.|+++.. |.        
T Consensus       218 ld~l~NL~dvDlS~N~Lp--~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL  293 (1255)
T KOG0444|consen  218 LDDLHNLRDVDLSENNLP--IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVL-PDAVCKLTKL  293 (1255)
T ss_pred             hhhhhhhhhccccccCCC--cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccc-hHHHhhhHHH
Confidence            445555555555555554  34555555555555555555554 3333333344444444444444310 00        


Q ss_pred             ---------cCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          167 ---------LGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       167 ---------~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                               +.-..+|..++.+..|+++..++|.+  +.+|..+.++.+|+.|.++.|++
T Consensus       294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             HHHHhccCcccccCCccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccccce
Confidence                     00123555555555555555555555  23555555555555555555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.98  E-value=5.3e-11  Score=104.39  Aligned_cols=121  Identities=22%  Similarity=0.128  Sum_probs=66.6

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccc--------
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLE--------  166 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~--------  166 (219)
                      |..+.++++|+|+.|+++.. --..+.+++.|+.|+++.|.+...-++.|.-.++|++|+|++|+++...++        
T Consensus       265 Fy~l~kme~l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  265 FYGLEKMEHLNLETNRLQAV-NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             eeeecccceeecccchhhhh-hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence            55566666666666666532 223455666666666666666644556666666666666666666421100        


Q ss_pred             ----cCC---ccc-cHHHhcCCCCCEEeccCccCCCCCcC---hhhcCCCCCCEeecccccc
Q 040237          167 ----LGK---TSL-TNLVQKLTNLETLNLGRVLIFNTPIP---HNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       167 ----~~~---~~~-p~~l~~l~~L~~L~l~~N~l~~~~~p---~~l~~l~~L~~L~ls~N~l  217 (219)
                          ++.   ..+ ...+..+++|+.|||.+|.++. .+-   ..|..|++|+.|++.+|++
T Consensus       344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~gNql  404 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTGNQL  404 (873)
T ss_pred             hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecCcee
Confidence                000   011 1224455666666666666654 222   2355566677777766665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.92  E-value=2.4e-09  Score=82.25  Aligned_cols=105  Identities=24%  Similarity=0.262  Sum_probs=53.2

Q ss_pred             cc-cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhh-hcCCCCcEEEccCCCCCCCccccCCccc
Q 040237           95 AF-SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEI-LELSNLVSLDLSGNGYSGGFLELGKTSL  172 (219)
Q Consensus        95 l~-~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~-~~l~~L~~L~Ls~N~l~g~~~~~~~~~~  172 (219)
                      +. .+.+|+.|++++|.++.  + +.+..+++|++|++++|.++ .++..+ ..+++|+.|++++|++..      ... 
T Consensus        37 L~~~l~~L~~L~Ls~N~I~~--l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~------l~~-  105 (175)
T PF14580_consen   37 LGATLDKLEVLDLSNNQITK--L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISD------LNE-  105 (175)
T ss_dssp             --TT-TT--EEE-TTS--S-----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---S------CCC-
T ss_pred             hhhhhcCCCEEECCCCCCcc--c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCC------hHH-
Confidence            44 47789999999999994  4 46888999999999999999 665555 468999999999999853      122 


Q ss_pred             cHHHhcCCCCCEEeccCccCCCCCcC----hhhcCCCCCCEeec
Q 040237          173 TNLVQKLTNLETLNLGRVLIFNTPIP----HNLGNLSSLRFLSL  212 (219)
Q Consensus       173 p~~l~~l~~L~~L~l~~N~l~~~~~p----~~l~~l~~L~~L~l  212 (219)
                      -..++.+++|++|++.+|.++. . +    ..+..+|+|+.||-
T Consensus       106 l~~L~~l~~L~~L~L~~NPv~~-~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  106 LEPLSSLPKLRVLSLEGNPVCE-K-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             CGGGGG-TT--EEE-TT-GGGG-S-TTHHHHHHHH-TT-SEETT
T ss_pred             hHHHHcCCCcceeeccCCcccc-h-hhHHHHHHHHcChhheeCC
Confidence            3557789999999999999976 2 3    34668899999874

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.87  E-value=3.5e-08  Score=91.47  Aligned_cols=98  Identities=23%  Similarity=0.380  Sum_probs=64.1

Q ss_pred             CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhc
Q 040237           99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK  178 (219)
Q Consensus        99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~  178 (219)
                      ++++.|++++|.++  .+|..+.  ++|++|++++|+++ .+|..+.  .+|+.|++++|.++         .+|..+. 
T Consensus       199 ~~L~~L~Ls~N~Lt--sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~---------~LP~~l~-  261 (754)
T PRK15370        199 EQITTLILDNNELK--SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT---------ELPERLP-  261 (754)
T ss_pred             cCCcEEEecCCCCC--cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC---------cCChhHh-
Confidence            35777777777777  3666543  47777777777777 5665543  35777777777763         3444443 


Q ss_pred             CCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       179 l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                       .+|+.|++++|+++.  +|..+.  ++|++|++++|+|+
T Consensus       262 -s~L~~L~Ls~N~L~~--LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        262 -SALQSLDLFHNKISC--LPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             -CCCCEEECcCCccCc--cccccC--CCCcEEECCCCccc
Confidence             467778887777754  565443  46777777777765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.84  E-value=2.8e-10  Score=104.17  Aligned_cols=108  Identities=27%  Similarity=0.382  Sum_probs=96.9

Q ss_pred             cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchh-hhcCCCCcEEEccCCCCCCCccccCCccccHH
Q 040237           97 SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSE-ILELSNLVSLDLSGNGYSGGFLELGKTSLTNL  175 (219)
Q Consensus        97 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~-~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~  175 (219)
                      .++.|+.|++.+|.++.. +-+.+.++++|+.|+|++|++. .+|+. +.++..|+.|+||+|+++         .+|..
T Consensus       357 ~~~~Lq~LylanN~Ltd~-c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~---------~Lp~t  425 (1081)
T KOG0618|consen  357 NHAALQELYLANNHLTDS-CFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT---------TLPDT  425 (1081)
T ss_pred             hhHHHHHHHHhcCccccc-chhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh---------hhhHH
Confidence            466789999999999986 6667899999999999999998 78874 688999999999999985         79999


Q ss_pred             HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       176 l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +.++..|+.|...+|++..  +| .+..++.|+.+|++.|+++
T Consensus       426 va~~~~L~tL~ahsN~l~~--fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  426 VANLGRLHTLRAHSNQLLS--FP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             HHhhhhhHHHhhcCCceee--ch-hhhhcCcceEEecccchhh
Confidence            9999999999999999955  77 8999999999999999875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.82  E-value=2.3e-09  Score=89.61  Aligned_cols=114  Identities=22%  Similarity=0.311  Sum_probs=71.2

Q ss_pred             CCEeecCCCCCCCCC---CchhhcCC-CCCCEEEcccCCCCCC----CchhhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237          101 ILSGNLAGNDFRYPE---IPPEIANL-SRLSYLNLSDSFFTGQ----IPSEILELSNLVSLDLSGNGYSGGFLELGKTSL  172 (219)
Q Consensus       101 L~~L~L~~n~l~~~~---~p~~l~~l-~~L~~L~Ls~n~l~g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~  172 (219)
                      |++|++++|++....   +...+..+ ++|+.|++++|.+++.    ++..+..+.+|+.|++++|.+++.    ....+
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l  185 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA----GIRAL  185 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH----HHHHH
Confidence            777777777665211   22344555 6777777777777642    233455566777777777776431    01124


Q ss_pred             cHHHhcCCCCCEEeccCccCCCC---CcChhhcCCCCCCEeeccccccc
Q 040237          173 TNLVQKLTNLETLNLGRVLIFNT---PIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       173 p~~l~~l~~L~~L~l~~N~l~~~---~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +..+...++|++|++++|.+++.   .++..+..+++|++|++++|+++
T Consensus       186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            44555667888888888887641   13345567788888888888775

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.79  E-value=4.3e-09  Score=87.94  Aligned_cols=119  Identities=24%  Similarity=0.239  Sum_probs=76.8

Q ss_pred             cccC-CCCCEeecCCCCCCCC---CCchhhcCCCCCCEEEcccCCCCCC----CchhhhcCCCCcEEEccCCCCCCCccc
Q 040237           95 AFSI-LSILSGNLAGNDFRYP---EIPPEIANLSRLSYLNLSDSFFTGQ----IPSEILELSNLVSLDLSGNGYSGGFLE  166 (219)
Q Consensus        95 l~~l-~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~~  166 (219)
                      +..+ ++|+++++++|.+++.   .++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++.   
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~---  208 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE---  208 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH---
Confidence            4445 7788888888887742   1233456677888888888887742    333455566888888888877431   


Q ss_pred             cCCccccHHHhcCCCCCEEeccCccCCCCCcChhhc-----CCCCCCEeeccccccc
Q 040237          167 LGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLG-----NLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       167 ~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~-----~l~~L~~L~ls~N~l~  218 (219)
                       +...+...+..+++|++|++++|.+++ .....+.     ..+.|++|++++|.++
T Consensus       209 -~~~~l~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         209 -GASALAETLASLKSLEVLNLGDNNLTD-AGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             -HHHHHHHHhcccCCCCEEecCCCcCch-HHHHHHHHHHhccCCCceEEEccCCCCC
Confidence             012344556677788888888888765 2222221     1367888888888775

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.76  E-value=5.5e-09  Score=91.97  Aligned_cols=119  Identities=26%  Similarity=0.256  Sum_probs=72.6

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccc--cC----
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLE--LG----  168 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~--~~----  168 (219)
                      +.++++|+++++..|.++  .+|.......+++.|+|.+|.++..-..++..++.|+.+|||.|.++.. +.  +.    
T Consensus        98 f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i-~~~sfp~~~n  174 (873)
T KOG4194|consen   98 FYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEI-PKPSFPAKVN  174 (873)
T ss_pred             HhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcc-cCCCCCCCCC
Confidence            666777777777777776  4666555555666666666666644444555566666666666655321 10  00    


Q ss_pred             -----------CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          169 -----------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       169 -----------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                                 ..--...|.++.+|..|.|++|.++. ..+..|.++++|+.|+|..|+|
T Consensus       175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             ceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhccccce
Confidence                       00011235566677778888888766 3345677788888888888876

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.75  E-value=5.1e-09  Score=66.37  Aligned_cols=59  Identities=39%  Similarity=0.534  Sum_probs=36.8

Q ss_pred             CCcEEEccCCCCCCCccccCCcccc-HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          149 NLVSLDLSGNGYSGGFLELGKTSLT-NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       149 ~L~~L~Ls~N~l~g~~~~~~~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      +|++|++++|+++         .+| ..+..+++|++|++++|.++. ..|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~---------~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLT---------EIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTES---------EECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCC---------ccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCcC
Confidence            4566666666653         233 345666667777777776655 3445667777777777777764

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.75  E-value=1.4e-08  Score=94.01  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             CCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          181 NLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       181 ~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      +|+.|++++|+++.  +|..+.++++|+.|++++|+|+|
T Consensus       423 ~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        423 GLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             hhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCc
Confidence            46677788888754  88889999999999999999976

>PLN03210 Resistant to P

Probab=98.69  E-value=8.8e-08  Score=93.26  Aligned_cols=107  Identities=25%  Similarity=0.365  Sum_probs=72.7

Q ss_pred             cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHH
Q 040237           97 SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLV  176 (219)
Q Consensus        97 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l  176 (219)
                      ...+|++|++.+|.+.  .++..+..+++|++++++++.....+| .+..+++|+.|++++|..        ...+|..+
T Consensus       609 ~~~~L~~L~L~~s~l~--~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~--------L~~lp~si  677 (1153)
T PLN03210        609 RPENLVKLQMQGSKLE--KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSS--------LVELPSSI  677 (1153)
T ss_pred             CccCCcEEECcCcccc--ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCC--------ccccchhh
Confidence            3466777777777766  366666777777777777665444666 366677777777777654        33567777


Q ss_pred             hcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccc
Q 040237          177 QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCL  216 (219)
Q Consensus       177 ~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~  216 (219)
                      +++++|+.|++++|.... .+|..+ ++++|++|++++|.
T Consensus       678 ~~L~~L~~L~L~~c~~L~-~Lp~~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        678 QYLNKLEDLDMSRCENLE-ILPTGI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             hccCCCCEEeCCCCCCcC-ccCCcC-CCCCCCEEeCCCCC
Confidence            888888888888765444 566554 56777777777663

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.67  E-value=9e-09  Score=65.24  Aligned_cols=58  Identities=36%  Similarity=0.474  Sum_probs=30.4

Q ss_pred             CCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCC
Q 040237          100 SILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG  159 (219)
Q Consensus       100 ~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~  159 (219)
                      +|++|++++|+++.  +| ..+..+++|++|++++|.+...-|..|..+++|+++++++|+
T Consensus         2 ~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555666655552  33 345555555555555555553333345555555555555554

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.65  E-value=4.4e-09  Score=86.10  Aligned_cols=117  Identities=27%  Similarity=0.321  Sum_probs=69.6

Q ss_pred             CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc--c-ccCC------
Q 040237           99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF--L-ELGK------  169 (219)
Q Consensus        99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~--~-~~~~------  169 (219)
                      +.|+++|+++|.++  .+.++..-.+.++.|+++.|.+. .+ ..+..+++|+.||+|+|.++.-.  . .++.      
T Consensus       284 q~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh--hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            34566666666665  35555555666666666666665 22 23555566666666666543200  0 0000      


Q ss_pred             -c---cccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          170 -T---SLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       170 -~---~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                       +   .--..+..+-+|..||+.+|++....--..++++|-|+++.+.+|.+.|
T Consensus       360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence             0   1123456667888899999888541223568889999999999998764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.63  E-value=5.1e-08  Score=90.42  Aligned_cols=100  Identities=20%  Similarity=0.347  Sum_probs=58.8

Q ss_pred             CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhc-------------------CCCCcEEEccCCC
Q 040237           99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILE-------------------LSNLVSLDLSGNG  159 (219)
Q Consensus        99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~-------------------l~~L~~L~Ls~N~  159 (219)
                      .+|+.|++++|++.  .+|..+.  ++|++|++++|+++ .+|..+..                   .++|+.|++++|.
T Consensus       262 s~L~~L~Ls~N~L~--~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~  336 (754)
T PRK15370        262 SALQSLDLFHNKIS--CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA  336 (754)
T ss_pred             CCCCEEECcCCccC--ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCc
Confidence            36778888888777  3666553  46777777777776 44443221                   1234444444444


Q ss_pred             CCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          160 YSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       160 l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      ++         .+|..+.  ++|+.|++++|+++.  +|..+.  ++|++|++++|+++
T Consensus       337 Lt---------~LP~~l~--~sL~~L~Ls~N~L~~--LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        337 LT---------SLPASLP--PELQVLDVSKNQITV--LPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             cc---------cCChhhc--CcccEEECCCCCCCc--CChhhc--CCcCEEECCCCcCC
Confidence            42         2333222  467777777777754  565443  46777777777664

>PLN03210 Resistant to P

Probab=98.58  E-value=2.8e-07  Score=89.82  Aligned_cols=115  Identities=24%  Similarity=0.371  Sum_probs=64.2

Q ss_pred             CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcccc----------
Q 040237           98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLEL----------  167 (219)
Q Consensus        98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~----------  167 (219)
                      .++|+.|++++|..... +|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|..-..+|..          
T Consensus       777 ~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls  854 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLS  854 (1153)
T ss_pred             cccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECC
Confidence            34556666666554443 55556666666666665554333455443 4455555555554322211110          


Q ss_pred             --CCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccc
Q 040237          168 --GKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC  215 (219)
Q Consensus       168 --~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N  215 (219)
                        ....+|..+..+++|+.|++++|+--. .+|..+..+++|+.+++++|
T Consensus       855 ~n~i~~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCCccChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCC
Confidence              012467777777888888887744323 46666777777777777766

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.55  E-value=6.9e-09  Score=90.97  Aligned_cols=103  Identities=24%  Similarity=0.338  Sum_probs=67.6

Q ss_pred             CCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCC
Q 040237          101 ILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLT  180 (219)
Q Consensus       101 L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~  180 (219)
                      |+.|.+++|+++  .+|+.++.+..|..||.+.|.+. .+|++++.+.+|+.+++..|.+         ..+|..+..+ 
T Consensus       145 Lkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l---------~~lp~El~~L-  211 (722)
T KOG0532|consen  145 LKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHL---------EDLPEELCSL-  211 (722)
T ss_pred             ceeEEEecCccc--cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhh---------hhCCHHHhCC-
Confidence            333444444444  24445555555555555555555 5555555666666666665554         2577777744 


Q ss_pred             CCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          181 NLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       181 ~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      .|..||++.|+++.  +|-.|.+|+.|++|-|.+|.+.
T Consensus       212 pLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  212 PLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ceeeeecccCceee--cchhhhhhhhheeeeeccCCCC
Confidence            47889999999966  8999999999999999999874

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.55  E-value=1.8e-08  Score=82.49  Aligned_cols=68  Identities=25%  Similarity=0.253  Sum_probs=56.5

Q ss_pred             CchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCC
Q 040237          116 IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN  194 (219)
Q Consensus       116 ~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~  194 (219)
                      .-..+...+.|+++|+++|.++ .+-.++.-.+.++.|++|+|.+.          .-+.++.+++|+.||+++|.++.
T Consensus       276 ~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~----------~v~nLa~L~~L~~LDLS~N~Ls~  343 (490)
T KOG1259|consen  276 ALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR----------TVQNLAELPQLQLLDLSGNLLAE  343 (490)
T ss_pred             eEEecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee----------eehhhhhcccceEeecccchhHh
Confidence            3345556788999999999999 77788888999999999999983          33458889999999999998754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.54  E-value=5.3e-07  Score=83.70  Aligned_cols=112  Identities=23%  Similarity=0.259  Sum_probs=60.5

Q ss_pred             cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC-
Q 040237           91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG-  168 (219)
Q Consensus        91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~-  168 (219)
                      .+|+ +.  .+|+.|++.+|+++  .+|..   +++|++|++++|+++ .+|..   .++|+.|++++|.++. +|... 
T Consensus       215 sLP~~l~--~~L~~L~L~~N~Lt--~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~~-Lp~lp~  282 (788)
T PRK15387        215 TLPDCLP--AHITTLVIPDNNLT--SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLTH-LPALPS  282 (788)
T ss_pred             cCCcchh--cCCCEEEccCCcCC--CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchhh-hhhchh
Confidence            3555 33  35677777777766  35542   456677777777666 44532   2344455555554432 01000 


Q ss_pred             -----------CccccHHHhcCCCCCEEeccCccCCCCCcChh---hc-------------CC-CCCCEeecccccccC
Q 040237          169 -----------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHN---LG-------------NL-SSLRFLSLQNCLVQG  219 (219)
Q Consensus       169 -----------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~---l~-------------~l-~~L~~L~ls~N~l~G  219 (219)
                                 ...+|.   ..++|+.|++++|++++  +|..   +.             .+ .+|++|++++|+|++
T Consensus       283 ~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~--Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~  356 (788)
T PRK15387        283 GLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS  356 (788)
T ss_pred             hcCEEECcCCccccccc---cccccceeECCCCcccc--CCCCcccccccccccCccccccccccccceEecCCCccCC
Confidence                       012232   23678889999888866  4431   11             11 267788888887763

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.54  E-value=1.6e-08  Score=88.76  Aligned_cols=114  Identities=27%  Similarity=0.368  Sum_probs=70.4

Q ss_pred             cccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcccc
Q 040237           89 PSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLEL  167 (219)
Q Consensus        89 ~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~  167 (219)
                      ...+|+ +.++..|.+++++.|+++  .+|..++.++ |+.|-+++|+++ .+|..++....|..+|.+.|.+-      
T Consensus       110 ~r~ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~------  179 (722)
T KOG0532|consen  110 IRTIPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ------  179 (722)
T ss_pred             ceecchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh------
Confidence            344555 666666666666666666  3566555554 566666666666 66666666666666666666642      


Q ss_pred             CCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          168 GKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       168 ~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                         .+|..++.+.+|+.|.+..|.+..  +|.++..| .|..||++.|+++
T Consensus       180 ---slpsql~~l~slr~l~vrRn~l~~--lp~El~~L-pLi~lDfScNkis  224 (722)
T KOG0532|consen  180 ---SLPSQLGYLTSLRDLNVRRNHLED--LPEELCSL-PLIRLDFSCNKIS  224 (722)
T ss_pred             ---hchHHhhhHHHHHHHHHhhhhhhh--CCHHHhCC-ceeeeecccCcee
Confidence               566666666666666666666644  56666644 3666666666653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.41  E-value=1.7e-07  Score=81.07  Aligned_cols=107  Identities=36%  Similarity=0.506  Sum_probs=72.6

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCC-CCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLS-RLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~-~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p  173 (219)
                      +..++.++.+++.+|.+.  .+|+....++ +|+.|++++|.+. .+|..+..++.|+.|++++|+++         .+|
T Consensus       112 ~~~~~~l~~L~l~~n~i~--~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~---------~l~  179 (394)
T COG4886         112 LLELTNLTSLDLDNNNIT--DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS---------DLP  179 (394)
T ss_pred             hhcccceeEEecCCcccc--cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh---------hhh
Confidence            445566777777777777  4666666664 7777777777777 66666777777777777777764         455


Q ss_pred             HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccc
Q 040237          174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC  215 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N  215 (219)
                      ...+..+.|+.|++++|++..  +|........|+++.+++|
T Consensus       180 ~~~~~~~~L~~L~ls~N~i~~--l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         180 KLLSNLSNLNNLDLSGNKISD--LPPEIELLSALEELDLSNN  219 (394)
T ss_pred             hhhhhhhhhhheeccCCcccc--CchhhhhhhhhhhhhhcCC
Confidence            555566777777777777754  6665544555666666666

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.34  E-value=2.7e-07  Score=79.76  Aligned_cols=70  Identities=30%  Similarity=0.409  Sum_probs=48.1

Q ss_pred             cccccc-cccCC-CCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCC
Q 040237           89 PSTLAA-AFSIL-SILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYS  161 (219)
Q Consensus        89 ~g~lp~-l~~l~-~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~  161 (219)
                      .-.+++ ...+. +|++|++++|.+.  .+|..+..+++|+.|+++.|++. .+|...+.++.|+.+++++|+++
T Consensus       128 i~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         128 ITDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             cccCccccccchhhcccccccccchh--hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc
Confidence            344555 44453 7888888888877  46666777777777777777777 66665556677777777777654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.33  E-value=5.6e-07  Score=84.91  Aligned_cols=106  Identities=32%  Similarity=0.268  Sum_probs=74.9

Q ss_pred             CCCCCEeecCCCC--CCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHH
Q 040237           98 ILSILSGNLAGND--FRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL  175 (219)
Q Consensus        98 l~~L~~L~L~~n~--l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~  175 (219)
                      .+.|++|-+.+|.  +... .+..|..++.|++||+++|.-.+.+|.+++.+.+|++|+++...++         .+|..
T Consensus       544 ~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~---------~LP~~  613 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS---------HLPSG  613 (889)
T ss_pred             CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc---------ccchH
Confidence            3457777777775  3321 2334777888888888877666688888888888888888887763         67888


Q ss_pred             HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccc
Q 040237          176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN  214 (219)
Q Consensus       176 l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~  214 (219)
                      ++++.+|.+|++..+.... .+|.....|.+|++|.+..
T Consensus       614 l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  614 LGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             HHHHHhhheeccccccccc-cccchhhhcccccEEEeec
Confidence            8888888888887766544 4555566677888877654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=2.4e-08  Score=89.89  Aligned_cols=108  Identities=25%  Similarity=0.281  Sum_probs=85.2

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchh-hhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSE-ILELSNLVSLDLSGNGYSGGFLELGKTSLT  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~-~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p  173 (219)
                      +.-++.++.|+|+.|.++.  + +.+..+++|++||++.|.+. .+|.- ...+ +|+.|++++|.++          --
T Consensus       183 Lqll~ale~LnLshNk~~~--v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~----------tL  247 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTK--V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT----------TL  247 (1096)
T ss_pred             HHHHHHhhhhccchhhhhh--h-HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH----------hh
Confidence            6778899999999999984  3 48889999999999999998 66652 2333 4999999999873          33


Q ss_pred             HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      ..+.++.+|+.||+++|-+.+-.--..++.+..|+.|.|.||.+
T Consensus       248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            56788999999999999887622224466778899999999976

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.27  E-value=1.3e-07  Score=69.23  Aligned_cols=92  Identities=20%  Similarity=0.287  Sum_probs=73.7

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcC-CCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIAN-LSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~-l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p  173 (219)
                      +....+|...+|++|.+.  .+|+.+.. .+.++.+++++|.++ .+|.++..++.|+.++++.|.+.         ..|
T Consensus        49 l~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~---------~~p  116 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN---------AEP  116 (177)
T ss_pred             HhCCceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc---------cch
Confidence            666778888899999998  57877664 458889999999998 88999999999999999999875         456


Q ss_pred             HHHhcCCCCCEEeccCccCCCCCcChh
Q 040237          174 NLVQKLTNLETLNLGRVLIFNTPIPHN  200 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~  200 (219)
                      ..+..+.++-.|+..+|..  .++|..
T Consensus       117 ~vi~~L~~l~~Lds~~na~--~eid~d  141 (177)
T KOG4579|consen  117 RVIAPLIKLDMLDSPENAR--AEIDVD  141 (177)
T ss_pred             HHHHHHHhHHHhcCCCCcc--ccCcHH
Confidence            6666678888888888876  346644

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.26  E-value=1.3e-07  Score=79.82  Aligned_cols=112  Identities=26%  Similarity=0.302  Sum_probs=67.6

Q ss_pred             CCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccC-CCCCCCccc-----cC----
Q 040237          100 SILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSG-NGYSGGFLE-----LG----  168 (219)
Q Consensus       100 ~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~-N~l~g~~~~-----~~----  168 (219)
                      .-.+++|..|.++.  +|+ .|..+++|+.|||+.|.++-.-|..|..+..+..|.+.+ |+++.. |.     +.    
T Consensus        68 ~tveirLdqN~I~~--iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l-~k~~F~gL~slqr  144 (498)
T KOG4237|consen   68 ETVEIRLDQNQISS--IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL-PKGAFGGLSSLQR  144 (498)
T ss_pred             cceEEEeccCCccc--CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh-hhhHhhhHHHHHH
Confidence            45667788888873  554 677888888888888888866677788887777766655 665321 10     00    


Q ss_pred             --------CccccHHHhcCCCCCEEeccCccCCCCCcCh-hhcCCCCCCEeeccccc
Q 040237          169 --------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPH-NLGNLSSLRFLSLQNCL  216 (219)
Q Consensus       169 --------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~-~l~~l~~L~~L~ls~N~  216 (219)
                              .-...+.+..++++..|.+.+|.+..  ++. .+..+..++++.+..|.
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~--i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS--ICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhh--hccccccchhccchHhhhcCc
Confidence                    01123345555556666666665532  443 45555566666555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.24  E-value=1.4e-07  Score=69.06  Aligned_cols=104  Identities=19%  Similarity=0.217  Sum_probs=84.7

Q ss_pred             CCCEeecCCCCCCCCCCch---hhcCCCCCCEEEcccCCCCCCCchhhhcC-CCCcEEEccCCCCCCCccccCCccccHH
Q 040237          100 SILSGNLAGNDFRYPEIPP---EIANLSRLSYLNLSDSFFTGQIPSEILEL-SNLVSLDLSGNGYSGGFLELGKTSLTNL  175 (219)
Q Consensus       100 ~L~~L~L~~n~l~~~~~p~---~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l-~~L~~L~Ls~N~l~g~~~~~~~~~~p~~  175 (219)
                      .+-.++|+.+.+.  .+++   .+....+|+..++++|.+. ..|..|... +..+.+++++|.++         .+|..
T Consensus        28 E~h~ldLssc~lm--~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis---------dvPeE   95 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM--YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS---------DVPEE   95 (177)
T ss_pred             Hhhhcccccchhh--HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh---------hchHH
Confidence            3456778888775  2554   4556778888899999999 788877654 58999999999985         68999


Q ss_pred             HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       176 l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      +..++.|+.|+++.|.+..  .|..+..+.++..|+..+|.+
T Consensus        96 ~Aam~aLr~lNl~~N~l~~--~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   96 LAAMPALRSLNLRFNPLNA--EPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             HhhhHHhhhcccccCcccc--chHHHHHHHhHHHhcCCCCcc
Confidence            9999999999999999966  787777788898898888764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.23  E-value=1.5e-06  Score=51.24  Aligned_cols=37  Identities=46%  Similarity=0.524  Sum_probs=21.9

Q ss_pred             CCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCC
Q 040237          149 NLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN  194 (219)
Q Consensus       149 ~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~  194 (219)
                      +|++|++++|+++         .+|..++++++|+.|++++|.++.
T Consensus         2 ~L~~L~l~~N~i~---------~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT---------DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S---------SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc---------ccCchHhCCCCCCEEEecCCCCCC
Confidence            5666666666653         355556666666666666666644

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.16  E-value=1.4e-07  Score=79.71  Aligned_cols=105  Identities=22%  Similarity=0.219  Sum_probs=69.3

Q ss_pred             CCccccccc--cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEccc-CCCCCCCch-hhhcCCCCcEEEccCCCCC
Q 040237           86 SKVPSTLAA--AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSD-SFFTGQIPS-EILELSNLVSLDLSGNGYS  161 (219)
Q Consensus        86 ~~l~g~lp~--l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~-n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~  161 (219)
                      ++....+|+  |..+++|+.|||++|.++.. -|+.|.+++++..|-+.+ |+++ .+|. .|.++..++.|.+.-|.++
T Consensus        76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~  153 (498)
T KOG4237|consen   76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHIN  153 (498)
T ss_pred             cCCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhc
Confidence            455667787  99999999999999999965 677899999888877666 8887 5554 3555555555544444322


Q ss_pred             CCc-------cccC--------CccccH-HHhcCCCCCEEeccCccC
Q 040237          162 GGF-------LELG--------KTSLTN-LVQKLTNLETLNLGRVLI  192 (219)
Q Consensus       162 g~~-------~~~~--------~~~~p~-~l~~l~~L~~L~l~~N~l  192 (219)
                      -..       +...        ...++. .+..+..++.+.+..|.+
T Consensus       154 Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  154 CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence            110       0000        113333 466777888888887764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.15  E-value=8.3e-08  Score=86.57  Aligned_cols=104  Identities=27%  Similarity=0.291  Sum_probs=83.4

Q ss_pred             CCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcC
Q 040237          100 SILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL  179 (219)
Q Consensus       100 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l  179 (219)
                      .|...+.+.|.+.  ....++.-++.++.|||+.|+++ .. +.+..+++|+.||+++|.++         .+|..-..-
T Consensus       165 ~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~-~v-~~Lr~l~~LkhLDlsyN~L~---------~vp~l~~~g  231 (1096)
T KOG1859|consen  165 KLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFT-KV-DNLRRLPKLKHLDLSYNCLR---------HVPQLSMVG  231 (1096)
T ss_pred             hHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhh-hh-HHHHhcccccccccccchhc---------cccccchhh
Confidence            4667788889888  46778889999999999999998 33 37899999999999999985         344322222


Q ss_pred             CCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          180 TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       180 ~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      ..|..|.+.+|.++.   -..+.++++|+.||+++|-++|
T Consensus       232 c~L~~L~lrnN~l~t---L~gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  232 CKLQLLNLRNNALTT---LRGIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             hhheeeeecccHHHh---hhhHHhhhhhhccchhHhhhhc
Confidence            359999999999855   3457889999999999997764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.10  E-value=3.5e-06  Score=49.62  Aligned_cols=35  Identities=40%  Similarity=0.583  Sum_probs=17.5

Q ss_pred             CCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCC
Q 040237          125 RLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGY  160 (219)
Q Consensus       125 ~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l  160 (219)
                      +|++|++++|+++ .+|+.+.+|++|++|++++|++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            4455555555555 4444455555555555555554

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.08  E-value=2.7e-06  Score=80.34  Aligned_cols=108  Identities=31%  Similarity=0.415  Sum_probs=83.7

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      |..++.|++||+++|.-.+. +|+.++.+-+|++|+++++.+. .+|..+.++..|.+|++..+.-.        ..+|.
T Consensus       567 f~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l--------~~~~~  636 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRL--------ESIPG  636 (889)
T ss_pred             HhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccc--------ccccc
Confidence            67799999999999876664 9999999999999999999999 99999999999999999988642        23456


Q ss_pred             HHhcCCCCCEEeccCccCCC-CCcChhhcCCCCCCEeec
Q 040237          175 LVQKLTNLETLNLGRVLIFN-TPIPHNLGNLSSLRFLSL  212 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~-~~~p~~l~~l~~L~~L~l  212 (219)
                      ....+.+|++|.+..-.... ...-..+.++..|+.+..
T Consensus       637 i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  637 ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            66679999999997654221 122234445555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=1.1e-06  Score=75.28  Aligned_cols=114  Identities=24%  Similarity=0.211  Sum_probs=59.3

Q ss_pred             ccCCCCCEeecCCCCCCCCCCchh-hcCCCCCCEEEcccCCCCCC-------------------------CchhhhcCCC
Q 040237           96 FSILSILSGNLAGNDFRYPEIPPE-IANLSRLSYLNLSDSFFTGQ-------------------------IPSEILELSN  149 (219)
Q Consensus        96 ~~l~~L~~L~L~~n~l~~~~~p~~-l~~l~~L~~L~Ls~n~l~g~-------------------------lp~~~~~l~~  149 (219)
                      ..+++|+.|+++.|.+... ..+. -..+++|+.|.++.|.++..                         -......+..
T Consensus       169 eqLp~Le~LNls~Nrl~~~-~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~  247 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSNF-ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT  247 (505)
T ss_pred             HhcccchhcccccccccCC-ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence            3466666667766666532 2111 11344555555555555421                         1111223345


Q ss_pred             CcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChh-----hcCCCCCCEeecccccc
Q 040237          150 LVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHN-----LGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       150 L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~-----l~~l~~L~~L~ls~N~l  217 (219)
                      |++|||++|++-.       ...-...++++.|+.|+++.+.+.....|+.     ...+++|++|+++.|++
T Consensus       248 L~~LdLs~N~li~-------~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  248 LQELDLSNNNLID-------FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             HhhccccCCcccc-------cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            5666666665421       0111335566677777777766655444543     34567777777777776

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.96  E-value=2.3e-06  Score=74.70  Aligned_cols=107  Identities=28%  Similarity=0.270  Sum_probs=70.4

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..++++..+++.+|.+..  +...+..+.+|++|++++|.++...  .+..+..|+.|++++|.++.          ..
T Consensus        91 l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~----------~~  156 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD----------IS  156 (414)
T ss_pred             cccccceeeeeccccchhh--cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh----------cc
Confidence            6667777888888887773  4444677788888888888877332  35566667788888887642          22


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChh-hcCCCCCCEeecccccc
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~-l~~l~~L~~L~ls~N~l  217 (219)
                      .+..+.+|+.+++++|.+..  +... ...+.+++.+.+.+|.+
T Consensus       157 ~~~~l~~L~~l~l~~n~i~~--ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  157 GLESLKSLKLLDLSYNRIVD--IENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             CCccchhhhcccCCcchhhh--hhhhhhhhccchHHHhccCCch
Confidence            34446777777777777755  2221 45566777777777654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.94  E-value=2.2e-06  Score=74.78  Aligned_cols=106  Identities=32%  Similarity=0.311  Sum_probs=85.0

Q ss_pred             cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHH
Q 040237           97 SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLV  176 (219)
Q Consensus        97 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l  176 (219)
                      .+..++.++++.|.+..  +-..+..+++|+.+++..|.+. .+...+..+.+|++|++++|.++.          -..+
T Consensus        70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~----------i~~l  136 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK----------LEGL  136 (414)
T ss_pred             HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccc----------ccch
Confidence            46677777888888773  3455888999999999999998 555447889999999999999853          1335


Q ss_pred             hcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          177 QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       177 ~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      ..++.|+.|++++|.+..   ...+..++.|+.+++++|+++
T Consensus       137 ~~l~~L~~L~l~~N~i~~---~~~~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  137 STLTLLKELNLSGNLISD---ISGLESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             hhccchhhheeccCcchh---ccCCccchhhhcccCCcchhh
Confidence            677779999999999966   345666899999999999875

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=1.9e-06  Score=73.69  Aligned_cols=89  Identities=26%  Similarity=0.234  Sum_probs=53.1

Q ss_pred             cccCCCCCEeecCCCCCCCC-CCchhhcCCCCCCEEEcccCCCCCCCchhh-hcCCCCcEEEccCCCCCCCccccCCccc
Q 040237           95 AFSILSILSGNLAGNDFRYP-EIPPEIANLSRLSYLNLSDSFFTGQIPSEI-LELSNLVSLDLSGNGYSGGFLELGKTSL  172 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~-~~l~~L~~L~Ls~N~l~g~~~~~~~~~~  172 (219)
                      ...+++++.|||+.|-+..- .+-.....+++|+.|+++.|++.-...... ..+++|+.|.+++|.++.       ..+
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~-------k~V  214 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW-------KDV  214 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH-------HHH
Confidence            44577778888888766521 022345577888888888887763333222 245677777888777752       223


Q ss_pred             cHHHhcCCCCCEEeccCc
Q 040237          173 TNLVQKLTNLETLNLGRV  190 (219)
Q Consensus       173 p~~l~~l~~L~~L~l~~N  190 (219)
                      ...+..+++|+.|++..|
T Consensus       215 ~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  215 QWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             HHHHHhCCcHHHhhhhcc
Confidence            333444555555555555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.84  E-value=2.2e-05  Score=72.55  Aligned_cols=113  Identities=21%  Similarity=0.219  Sum_probs=77.3

Q ss_pred             cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHH
Q 040237           97 SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLV  176 (219)
Q Consensus        97 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l  176 (219)
                      -++.|+.|.+.+-.+...++-.-..++++|..||+|+.+++ .+ ..++.+.+|+.|.+.+=.+.       ....-..+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e-------~~~~l~~L  216 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFE-------SYQDLIDL  216 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCC-------chhhHHHH
Confidence            46788888888877764333444557888888899888887 44 57788888888877765553       11223456


Q ss_pred             hcCCCCCEEeccCccCCCCC-cCh----hhcCCCCCCEeeccccccc
Q 040237          177 QKLTNLETLNLGRVLIFNTP-IPH----NLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       177 ~~l~~L~~L~l~~N~l~~~~-~p~----~l~~l~~L~~L~ls~N~l~  218 (219)
                      -++++|++||+|........ +..    .-..+|.|+.||.|++.++
T Consensus       217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            77899999999977654411 111    1235789999999987654

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.80  E-value=2.2e-05  Score=45.95  Aligned_cols=41  Identities=27%  Similarity=0.472  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHhcCccCCCCcccCCCCCCCccCCCCcccccCCCCC
Q 040237           40 DDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAA   85 (219)
Q Consensus        40 ~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~c   85 (219)
                      ++|++||++||+++..++.    ..+..|........|+|. |+.|
T Consensus         2 ~~d~~aLl~~k~~l~~~~~----~~l~~W~~~~~~~~C~W~-GV~C   42 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPS----GVLSSWNPSSDSDPCSWS-GVTC   42 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-----CCCTT--TT--S-CCCST-TEEE
T ss_pred             cHHHHHHHHHHHhcccccC----cccccCCCcCCCCCeeec-cEEe
Confidence            6899999999999986432    356778876434788898 7666

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.68  E-value=2.9e-05  Score=62.42  Aligned_cols=118  Identities=23%  Similarity=0.245  Sum_probs=76.2

Q ss_pred             CCCCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccC--CCCCCCchhhhcCCCCcEEEccCCCC
Q 040237           84 AASKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDS--FFTGQIPSEILELSNLVSLDLSGNGY  160 (219)
Q Consensus        84 ~c~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n--~l~g~lp~~~~~l~~L~~L~Ls~N~l  160 (219)
                      .|....|.+.. .-.+..|+.+++.+..++..   ..+..|++|++|+++.|  ++.+.++.-.-.+++|++++++.|++
T Consensus        27 ~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   27 NARSGAGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             hhhhcCCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            34555555665 45566677777777766632   45677889999999999  66666665566679999999999987


Q ss_pred             CCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcC--hhhcCCCCCCEee
Q 040237          161 SGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIP--HNLGNLSSLRFLS  211 (219)
Q Consensus       161 ~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~l~~l~~L~~L~  211 (219)
                      .-      ..++ ..+..+.+|..|++.+|..+...-+  ..+.-+++|++||
T Consensus       104 ~~------lstl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  104 KD------LSTL-RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             cc------cccc-chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            31      1112 2355667788888888776541111  2345567777765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.59  E-value=0.00013  Score=56.92  Aligned_cols=106  Identities=27%  Similarity=0.213  Sum_probs=76.4

Q ss_pred             CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHh
Q 040237           98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQ  177 (219)
Q Consensus        98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~  177 (219)
                      +.....+|+++|.+..   -+.+..++.|.+|.+.+|+++..-|.--..+++|..|.+.+|++..      .+.+ +.+.
T Consensus        41 ~d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~------l~dl-~pLa  110 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE------LGDL-DPLA  110 (233)
T ss_pred             ccccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh------hhhc-chhc
Confidence            3456778999998873   2568889999999999999984334333445789999999998742      1122 3366


Q ss_pred             cCCCCCEEeccCccCCCCCc---ChhhcCCCCCCEeeccc
Q 040237          178 KLTNLETLNLGRVLIFNTPI---PHNLGNLSSLRFLSLQN  214 (219)
Q Consensus       178 ~l~~L~~L~l~~N~l~~~~~---p~~l~~l~~L~~L~ls~  214 (219)
                      .+++|++|.+-+|.+.. .-   -..+..+++|+.||.++
T Consensus       111 ~~p~L~~Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  111 SCPKLEYLTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCccceeeecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence            78899999999998865 11   12466789999998754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.44  E-value=0.00012  Score=61.20  Aligned_cols=122  Identities=20%  Similarity=0.211  Sum_probs=69.0

Q ss_pred             cccCCCCCEeecCCCCCCCCCCc---hhhcCCCCCCEEEcccCCCCCCCch-h-------------hhcCCCCcEEEccC
Q 040237           95 AFSILSILSGNLAGNDFRYPEIP---PEIANLSRLSYLNLSDSFFTGQIPS-E-------------ILELSNLVSLDLSG  157 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p---~~l~~l~~L~~L~Ls~n~l~g~lp~-~-------------~~~l~~L~~L~Ls~  157 (219)
                      +...++|++++||.|.+....++   .-+.+...|++|.|.+|.+. +... .             .+.-+.|+.+..++
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            44566899999999988654222   23556778888888888775 2111 1             12235677777777


Q ss_pred             CCCCCCc------------------------cccCCccccHHHhcCCCCCEEeccCccCCC---CCcChhhcCCCCCCEe
Q 040237          158 NGYSGGF------------------------LELGKTSLTNLVQKLTNLETLNLGRVLIFN---TPIPHNLGNLSSLRFL  210 (219)
Q Consensus       158 N~l~g~~------------------------~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~---~~~p~~l~~l~~L~~L  210 (219)
                      |++...-                        .+.+...+-..+..+++|++||+..|-|+.   ..+...+..++.|+.+
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            7653210                        000001123445666777777777776643   0123445556667777


Q ss_pred             ecccccc
Q 040237          211 SLQNCLV  217 (219)
Q Consensus       211 ~ls~N~l  217 (219)
                      ++++|.+
T Consensus       247 ~l~dcll  253 (382)
T KOG1909|consen  247 NLGDCLL  253 (382)
T ss_pred             ccccccc
Confidence            7766655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.35  E-value=0.00011  Score=59.10  Aligned_cols=95  Identities=27%  Similarity=0.307  Sum_probs=64.4

Q ss_pred             CchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCC
Q 040237          116 IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNT  195 (219)
Q Consensus       116 ~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~  195 (219)
                      +..-...+..|+.+.+.+..++ ++ ..+..+++|+.|.++.|.+..      .+.++.....+++|+++++++|++...
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~------~~~l~vl~e~~P~l~~l~ls~Nki~~l  106 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRV------SGGLEVLAEKAPNLKVLNLSGNKIKDL  106 (260)
T ss_pred             cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccc------cccceehhhhCCceeEEeecCCccccc
Confidence            4444445666777777666665 22 356788999999999995432      234555556679999999999998641


Q ss_pred             CcChhhcCCCCCCEeeccccccc
Q 040237          196 PIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       196 ~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      .--..+..+.+|..|++.+|..+
T Consensus       107 stl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  107 STLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             cccchhhhhcchhhhhcccCCcc
Confidence            11123456677888898888654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.32  E-value=0.00013  Score=67.49  Aligned_cols=110  Identities=25%  Similarity=0.288  Sum_probs=79.1

Q ss_pred             CCCCCEeecCCCCCCCCCCchhhc-CCCCCCEEEcccCCCCCC-CchhhhcCCCCcEEEccCCCCCCCccccCCccccHH
Q 040237           98 ILSILSGNLAGNDFRYPEIPPEIA-NLSRLSYLNLSDSFFTGQ-IPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL  175 (219)
Q Consensus        98 l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~g~-lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~  175 (219)
                      -.+|++|++++...-....|..++ .+|.|+.|.+.+-.+... .-....++++|..||+|+.+++         .+ ..
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~---------nl-~G  190 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS---------NL-SG  190 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc---------Cc-HH
Confidence            357889999886643323555555 589999999988776522 2334467899999999999873         22 67


Q ss_pred             HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       176 l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      ++++++|+.|.+.+=.+.....-..+.+|++|+.||+|....
T Consensus       191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            889999999998876664311224677899999999998653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.16  E-value=0.00024  Score=59.49  Aligned_cols=120  Identities=21%  Similarity=0.225  Sum_probs=82.4

Q ss_pred             cccCCCCCEeecCCCCCCCC---CCchhhcCCCCCCEEEcccCCCCCC----CchhhhcCCCCcEEEccCCCCCCCcccc
Q 040237           95 AFSILSILSGNLAGNDFRYP---EIPPEIANLSRLSYLNLSDSFFTGQ----IPSEILELSNLVSLDLSGNGYSGGFLEL  167 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~~~  167 (219)
                      ...-+.|+++..+.|++...   .+...+...+.|+.+.++.|.+...    +-..+..+++|+.||+..|.|+-+    
T Consensus       153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e----  228 (382)
T KOG1909|consen  153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE----  228 (382)
T ss_pred             cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH----
Confidence            34456677888877777532   0223455667888888888887522    223567899999999999987521    


Q ss_pred             CCccccHHHhcCCCCCEEeccCccCCCCC---cChhh-cCCCCCCEeeccccccc
Q 040237          168 GKTSLTNLVQKLTNLETLNLGRVLIFNTP---IPHNL-GNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       168 ~~~~~p~~l~~l~~L~~L~l~~N~l~~~~---~p~~l-~~l~~L~~L~ls~N~l~  218 (219)
                      +...+...+..++.|+.++++++.+....   +-..+ ...++|+.+.+.+|.++
T Consensus       229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            12235566778889999999999987511   11222 24689999999999875

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.14  E-value=0.00088  Score=52.33  Aligned_cols=103  Identities=22%  Similarity=0.270  Sum_probs=71.6

Q ss_pred             CCEeecCCCCCCCCCCchhhc-CCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcC
Q 040237          101 ILSGNLAGNDFRYPEIPPEIA-NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL  179 (219)
Q Consensus       101 L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l  179 (219)
                      =+.+++++..+.   .-..++ -+.+...+|+++|.+. .++ .+..++.|.+|.+++|+++.        .-|..-.-+
T Consensus        21 e~e~~LR~lkip---~ienlg~~~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~--------I~p~L~~~~   87 (233)
T KOG1644|consen   21 ERELDLRGLKIP---VIENLGATLDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITR--------IDPDLDTFL   87 (233)
T ss_pred             cccccccccccc---chhhccccccccceecccccchh-hcc-cCCCccccceEEecCCccee--------eccchhhhc
Confidence            455666666543   112233 2456778999999986 433 57788999999999999853        223333345


Q ss_pred             CCCCEEeccCccCCCCCcC--hhhcCCCCCCEeeccccccc
Q 040237          180 TNLETLNLGRVLIFNTPIP--HNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       180 ~~L~~L~l~~N~l~~~~~p--~~l~~l~~L~~L~ls~N~l~  218 (219)
                      ++|..|.+.+|.+..  +.  .-+..+|+|++|.+-+|+++
T Consensus        88 p~l~~L~LtnNsi~~--l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   88 PNLKTLILTNNSIQE--LGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             cccceEEecCcchhh--hhhcchhccCCccceeeecCCchh
Confidence            789999999999854  32  34667899999999998764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=9.4e-05  Score=60.97  Aligned_cols=119  Identities=29%  Similarity=0.265  Sum_probs=69.5

Q ss_pred             ccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccC-CCCCC-CchhhhcCCCCcEEEccCCCCCCCcc--------
Q 040237           96 FSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDS-FFTGQ-IPSEILELSNLVSLDLSGNGYSGGFL--------  165 (219)
Q Consensus        96 ~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~g~-lp~~~~~l~~L~~L~Ls~N~l~g~~~--------  165 (219)
                      ..+.+|+.+.+.++++... +-..+..-.+|+.++++.+ .++.. .---+.++..|..|+++.+.++.+.-        
T Consensus       207 s~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            3455666666666666653 5556666777777777764 34311 11124667778888887776543210        


Q ss_pred             -------------ccCCccccHHHhcCCCCCEEeccCcc-CCCCCcChhhcCCCCCCEeeccccc
Q 040237          166 -------------ELGKTSLTNLVQKLTNLETLNLGRVL-IFNTPIPHNLGNLSSLRFLSLQNCL  216 (219)
Q Consensus       166 -------------~~~~~~~p~~l~~l~~L~~L~l~~N~-l~~~~~p~~l~~l~~L~~L~ls~N~  216 (219)
                                   ++....+.....++++|.+||+++|. ++. .....+.+++.|++|.++.|.
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhc
Confidence                         00011222334567888888888765 433 444566677777777777653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.75  E-value=0.00062  Score=56.28  Aligned_cols=87  Identities=31%  Similarity=0.324  Sum_probs=49.4

Q ss_pred             cCCCCCEeecCCCCCCCC-CCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHH
Q 040237           97 SILSILSGNLAGNDFRYP-EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL  175 (219)
Q Consensus        97 ~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~  175 (219)
                      ..+.++++||.+|.++.= ++-..+.+|+.|++|+++.|.+...|-..--...+|+.+.|.+..+.       -......
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~-------w~~~~s~  141 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS-------WTQSTSS  141 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC-------hhhhhhh
Confidence            345667777777766510 02233556777777777777766433221134556777766666552       1233445


Q ss_pred             HhcCCCCCEEeccCc
Q 040237          176 VQKLTNLETLNLGRV  190 (219)
Q Consensus       176 l~~l~~L~~L~l~~N  190 (219)
                      +..++.++.|.++.|
T Consensus       142 l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  142 LDDLPKVTELHMSDN  156 (418)
T ss_pred             hhcchhhhhhhhccc
Confidence            566666677766666

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.72  E-value=0.0069  Score=52.64  Aligned_cols=31  Identities=29%  Similarity=0.340  Sum_probs=18.0

Q ss_pred             CCCEEeccCccCCCCCcChhhcCCCCCCEeecccc
Q 040237          181 NLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC  215 (219)
Q Consensus       181 ~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N  215 (219)
                      +|++|++++|....  +|..+.  .+|++|+++.|
T Consensus       157 SLk~L~Is~c~~i~--LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNII--LPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCccc--Cccccc--ccCcEEEeccc
Confidence            67777777766432  343332  36666766554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.00024  Score=58.09  Aligned_cols=84  Identities=18%  Similarity=0.111  Sum_probs=40.9

Q ss_pred             CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhc
Q 040237           99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK  178 (219)
Q Consensus        99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~  178 (219)
                      .+.+.|+.=++.+...   +....|+.|++|.|+-|+++ .+. .+..|++|++|.|..|.+..      . .--.-+.+
T Consensus        19 ~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIs-sL~-pl~rCtrLkElYLRkN~I~s------l-dEL~YLkn   86 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKIS-SLA-PLQRCTRLKELYLRKNCIES------L-DELEYLKN   86 (388)
T ss_pred             HHhhhhcccCCCccHH---HHHHhcccceeEEeeccccc-cch-hHHHHHHHHHHHHHhccccc------H-HHHHHHhc
Confidence            3444555555554421   23345555666666666555 221 24455556666666655421      0 01122455


Q ss_pred             CCCCCEEeccCccCCC
Q 040237          179 LTNLETLNLGRVLIFN  194 (219)
Q Consensus       179 l~~L~~L~l~~N~l~~  194 (219)
                      +++|+.|.|..|.-.+
T Consensus        87 lpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   87 LPSLRTLWLDENPCCG  102 (388)
T ss_pred             CchhhhHhhccCCccc
Confidence            5566666665555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.46  E-value=0.0085  Score=49.15  Aligned_cols=66  Identities=17%  Similarity=0.180  Sum_probs=48.8

Q ss_pred             cccCCCCCEeecCCCCCCCCCCch----hhcCCCCCCEEEcccCCCCC----CCchhh---------hcCCCCcEEEccC
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPP----EIANLSRLSYLNLSDSFFTG----QIPSEI---------LELSNLVSLDLSG  157 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~----~l~~l~~L~~L~Ls~n~l~g----~lp~~~---------~~l~~L~~L~Ls~  157 (219)
                      +..+++|+.++|+.|.|... .|+    .+++-+.|.+|.+++|.+..    ++...+         ..-+.|+......
T Consensus        88 Llkcp~l~~v~LSDNAfg~~-~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSE-FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HhcCCcceeeeccccccCcc-cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            67789999999999999875 554    46678999999999998852    222111         1346788888888


Q ss_pred             CCCC
Q 040237          158 NGYS  161 (219)
Q Consensus       158 N~l~  161 (219)
                      |++.
T Consensus       167 NRle  170 (388)
T COG5238         167 NRLE  170 (388)
T ss_pred             chhc
Confidence            8874

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.00087  Score=55.41  Aligned_cols=86  Identities=24%  Similarity=0.324  Sum_probs=44.2

Q ss_pred             CCCCCCEEEcccCCCCC--CCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcCh
Q 040237          122 NLSRLSYLNLSDSFFTG--QIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPH  199 (219)
Q Consensus       122 ~l~~L~~L~Ls~n~l~g--~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~  199 (219)
                      ..+.++.+|+.+|.++.  .+..-+.+++.|++|+++.|++...|     +++|   ....+|+.|-+.+..+.=...-.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-----~~lp---~p~~nl~~lVLNgT~L~w~~~~s  140 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-----KSLP---LPLKNLRVLVLNGTGLSWTQSTS  140 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-----ccCc---ccccceEEEEEcCCCCChhhhhh
Confidence            34566666666666652  12223455666666666666664321     1222   22345666666555443212334


Q ss_pred             hhcCCCCCCEeecccc
Q 040237          200 NLGNLSSLRFLSLQNC  215 (219)
Q Consensus       200 ~l~~l~~L~~L~ls~N  215 (219)
                      .+..+|.++.|+++.|
T Consensus       141 ~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  141 SLDDLPKVTELHMSDN  156 (418)
T ss_pred             hhhcchhhhhhhhccc
Confidence            4455566666666655

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.0011  Score=54.96  Aligned_cols=111  Identities=26%  Similarity=0.260  Sum_probs=65.3

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcC-CCCCCEEEcccCC--C-CCCCchhhhcCCCCcEEEccCCCCCCCccccCCc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIAN-LSRLSYLNLSDSF--F-TGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT  170 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~-l~~L~~L~Ls~n~--l-~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~  170 (219)
                      +.+++.|.+|+++.+.+..+.+.-.+.. -.+|+.|+++++.  + ...+..-..++++|..|||+.|.--       ..
T Consensus       256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l-------~~  328 (419)
T KOG2120|consen  256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML-------KN  328 (419)
T ss_pred             HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc-------Cc
Confidence            4555666666666665543211111111 2345555555532  1 1122223457899999999988531       12


Q ss_pred             cccHHHhcCCCCCEEeccCccCCCCCcCh---hhcCCCCCCEeecccc
Q 040237          171 SLTNLVQKLTNLETLNLGRVLIFNTPIPH---NLGNLSSLRFLSLQNC  215 (219)
Q Consensus       171 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p~---~l~~l~~L~~L~ls~N  215 (219)
                      ..-..+.+++.|++|.++.++.   .+|.   .+...|+|.+||+.++
T Consensus       329 ~~~~~~~kf~~L~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  329 DCFQEFFKFNYLQHLSLSRCYD---IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hHHHHHHhcchheeeehhhhcC---CChHHeeeeccCcceEEEEeccc
Confidence            3445677889999999998875   3454   3567789999988764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.75  E-value=0.0024  Score=31.49  Aligned_cols=17  Identities=53%  Similarity=0.804  Sum_probs=7.6

Q ss_pred             CCEEEcccCCCCCCCchh
Q 040237          126 LSYLNLSDSFFTGQIPSE  143 (219)
Q Consensus       126 L~~L~Ls~n~l~g~lp~~  143 (219)
                      |++||+++|+++ .+|+.
T Consensus         2 L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             ESEEEETSSEES-EEGTT
T ss_pred             ccEEECCCCcCE-eCChh
Confidence            344444444444 44443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.20  E-value=0.027  Score=46.29  Aligned_cols=125  Identities=22%  Similarity=0.279  Sum_probs=69.9

Q ss_pred             cccccccccCCCCCEeecCCCCCCCC---CCchhhcCCCCCCEEEcccCCC---CCCCch-------hhhcCCCCcEEEc
Q 040237           89 PSTLAAAFSILSILSGNLAGNDFRYP---EIPPEIANLSRLSYLNLSDSFF---TGQIPS-------EILELSNLVSLDL  155 (219)
Q Consensus        89 ~g~lp~l~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l---~g~lp~-------~~~~l~~L~~L~L  155 (219)
                      .|.+..+..+..+..++|++|-+...   .+...+.+-++|+..+++.--.   ...+|+       .+-.|++|+..+|
T Consensus        20 k~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L   99 (388)
T COG5238          20 KGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL   99 (388)
T ss_pred             hHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence            33333355688899999999987632   1233455566777766654211   112333       2345677888888


Q ss_pred             cCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCC---CCcChh---------hcCCCCCCEeecccccc
Q 040237          156 SGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN---TPIPHN---------LGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       156 s~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~---~~~p~~---------l~~l~~L~~L~ls~N~l  217 (219)
                      |.|-+.-.+|    ..+-+.++.-+.|.+|.+++|.+.-   ..+...         ..+-|.|+.+....|++
T Consensus       100 SDNAfg~~~~----e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238         100 SDNAFGSEFP----EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cccccCcccc----hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            8887643222    1223445566677788887776532   011111         12335677777766665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.19  E-value=0.007  Score=29.77  Aligned_cols=19  Identities=32%  Similarity=0.454  Sum_probs=10.3

Q ss_pred             CCEEeccCccCCCCCcChhhc
Q 040237          182 LETLNLGRVLIFNTPIPHNLG  202 (219)
Q Consensus       182 L~~L~l~~N~l~~~~~p~~l~  202 (219)
                      |++||+++|+++  .+|..++
T Consensus         2 L~~Ldls~n~l~--~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT--SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES--EEGTTTT
T ss_pred             ccEEECCCCcCE--eCChhhc
Confidence            556666666654  2554444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.19  E-value=0.0014  Score=53.76  Aligned_cols=84  Identities=30%  Similarity=0.173  Sum_probs=64.9

Q ss_pred             CCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhc
Q 040237          123 LSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLG  202 (219)
Q Consensus       123 l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~  202 (219)
                      +.+.+.|+..++.++. + ....+|+.|+.|.||-|+++          --..+..+++|++|+|..|.|.+..--.-+.
T Consensus        18 l~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIs----------sL~pl~rCtrLkElYLRkN~I~sldEL~YLk   85 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKIS----------SLAPLQRCTRLKELYLRKNCIESLDELEYLK   85 (388)
T ss_pred             HHHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccc----------cchhHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence            5567788888888873 2 24568999999999999984          2355788999999999999996621124567


Q ss_pred             CCCCCCEeeccccccc
Q 040237          203 NLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       203 ~l~~L~~L~ls~N~l~  218 (219)
                      ++++|+.|.|..|.=.
T Consensus        86 nlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCC  101 (388)
T ss_pred             cCchhhhHhhccCCcc
Confidence            8999999999888643

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.44  E-value=0.052  Score=47.30  Aligned_cols=73  Identities=16%  Similarity=0.257  Sum_probs=41.1

Q ss_pred             CCCCEeecCCC-CCCCCCCchhhcCCCCCCEEEcccCCC--CCCCchhhhcC------------------CCCcEEEccC
Q 040237           99 LSILSGNLAGN-DFRYPEIPPEIANLSRLSYLNLSDSFF--TGQIPSEILEL------------------SNLVSLDLSG  157 (219)
Q Consensus        99 ~~L~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~n~l--~g~lp~~~~~l------------------~~L~~L~Ls~  157 (219)
                      .+|++|++++| .+.  .+|+.      |+.|+++.+..  -+.+|..+..+                  ++|++|++++
T Consensus        94 ~nLe~L~Ls~Cs~L~--sLP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~  165 (426)
T PRK15386         94 EGLEKLTVCHCPEIS--GLPES------VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTG  165 (426)
T ss_pred             hhhhheEccCccccc--ccccc------cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecC
Confidence            46777777777 333  25543      45555554432  12455544333                  3678888887


Q ss_pred             CCCCCCccccCCccccHHHhcCCCCCEEeccCc
Q 040237          158 NGYSGGFLELGKTSLTNLVQKLTNLETLNLGRV  190 (219)
Q Consensus       158 N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N  190 (219)
                      |...         .+|..+-  .+|+.|+++.+
T Consensus       166 c~~i---------~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        166 CSNI---------ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CCcc---------cCccccc--ccCcEEEeccc
Confidence            7642         1222221  47888998876

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.38  E-value=0.00099  Score=53.29  Aligned_cols=86  Identities=16%  Similarity=0.141  Sum_probs=48.5

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +......+.||++.|++-  .+-..+.-++.+..+|++.|.+. .+|..+++...++.+++..|..+         ..|.
T Consensus        38 i~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~---------~~p~  105 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS---------QQPK  105 (326)
T ss_pred             hhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh---------hCCc
Confidence            445555666666666554  13344555555666666666655 55666666555555555555542         4555


Q ss_pred             HHhcCCCCCEEeccCccC
Q 040237          175 LVQKLTNLETLNLGRVLI  192 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l  192 (219)
                      .++..+.+++++.-+|.+
T Consensus       106 s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  106 SQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             cccccCCcchhhhccCcc
Confidence            555666666666555554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.41  E-value=0.047  Score=24.99  Aligned_cols=9  Identities=33%  Similarity=0.379  Sum_probs=3.0

Q ss_pred             CEEEcccCC
Q 040237          127 SYLNLSDSF  135 (219)
Q Consensus       127 ~~L~Ls~n~  135 (219)
                      +.|++++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.30  E-value=0.18  Score=35.92  Aligned_cols=58  Identities=16%  Similarity=0.265  Sum_probs=23.3

Q ss_pred             cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccC
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSG  157 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~  157 (219)
                      +.++++|+.+.+.. .+.  .+++ .+...++++.+++..+ +. .++. .+..+.+++.+.+.+
T Consensus         8 F~~~~~l~~i~~~~-~~~--~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIK--KIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             TTT-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS
T ss_pred             HhCCCCCCEEEECC-Cee--EeChhhccccccccccccccc-cc-ccceeeeecccccccccccc
Confidence            44555566666553 233  1322 3555556666666553 33 2222 344555566666644

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.53  E-value=0.0033  Score=50.36  Aligned_cols=87  Identities=20%  Similarity=0.159  Sum_probs=58.6

Q ss_pred             hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcC
Q 040237          119 EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIP  198 (219)
Q Consensus       119 ~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p  198 (219)
                      .+......+.||++.|++- .+-..++.+..+..++++.|.+         ..+|..++....+..+++.+|+.+.  .|
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~---------~~~~~d~~q~~e~~~~~~~~n~~~~--~p  104 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI---------KFLPKDAKQQRETVNAASHKNNHSQ--QP  104 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH---------hhChhhHHHHHHHHHHHhhccchhh--CC
Confidence            3556667777777777765 4445566667777777777764         2456666776777777777777644  67


Q ss_pred             hhhcCCCCCCEeecccccc
Q 040237          199 HNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       199 ~~l~~l~~L~~L~ls~N~l  217 (219)
                      .+++..+.++++++.+|.|
T Consensus       105 ~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  105 KSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             ccccccCCcchhhhccCcc
Confidence            7777777777777776665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.42  E-value=0.23  Score=25.11  Aligned_cols=14  Identities=29%  Similarity=0.434  Sum_probs=6.8

Q ss_pred             CCCCEEEcccCCCC
Q 040237          124 SRLSYLNLSDSFFT  137 (219)
Q Consensus       124 ~~L~~L~Ls~n~l~  137 (219)
                      ++|++|++++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34445555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.42  E-value=0.23  Score=25.11  Aligned_cols=14  Identities=29%  Similarity=0.434  Sum_probs=6.8

Q ss_pred             CCCCEEEcccCCCC
Q 040237          124 SRLSYLNLSDSFFT  137 (219)
Q Consensus       124 ~~L~~L~Ls~n~l~  137 (219)
                      ++|++|++++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34445555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.63  E-value=0.28  Score=43.01  Aligned_cols=37  Identities=32%  Similarity=0.397  Sum_probs=17.5

Q ss_pred             CCCCCEEeccCcc-CCCCCcChhhcCCCCCCEeecccc
Q 040237          179 LTNLETLNLGRVL-IFNTPIPHNLGNLSSLRFLSLQNC  215 (219)
Q Consensus       179 l~~L~~L~l~~N~-l~~~~~p~~l~~l~~L~~L~ls~N  215 (219)
                      +++|+.|.+.++. +++..+-.....++.|++|+++++
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            4555555554444 333223233334455555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=88.38  E-value=1.1  Score=31.76  Aligned_cols=95  Identities=19%  Similarity=0.241  Sum_probs=48.6

Q ss_pred             cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCc-hhhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIP-SEILELSNLVSLDLSGNGYSGGFLELGKTSL  172 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp-~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~  172 (219)
                      +.+++.++.+.+.++ +..  ++. .+...+.++.+.+.. .+. .++ ..+..+.+++.+++..+ +.         .+
T Consensus        31 F~~~~~l~~i~~~~~-~~~--i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~---------~i   95 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN-LTS--IGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-IT---------EI   95 (129)
T ss_dssp             TTT-TT-SEEEESST-TSC--E-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--B---------EE
T ss_pred             ccccccccccccccc-ccc--cceeeeecccccccccccc-ccc-ccccccccccccccccccCcc-cc---------EE
Confidence            777888999999885 552  444 577787899999976 443 233 35667899999999765 31         23


Q ss_pred             -cHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCC
Q 040237          173 -TNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSL  207 (219)
Q Consensus       173 -p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L  207 (219)
                       ...+.+. +++.+.+.. .+.. .-...|.+.++|
T Consensus        96 ~~~~f~~~-~l~~i~~~~-~~~~-i~~~~F~~~~~l  128 (129)
T PF13306_consen   96 GSSSFSNC-NLKEINIPS-NITK-IEENAFKNCTKL  128 (129)
T ss_dssp             HTTTTTT--T--EEE-TT-B-SS-----GGG-----
T ss_pred             chhhhcCC-CceEEEECC-CccE-ECCccccccccC
Confidence             3345665 888888875 3322 122445555554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.08  E-value=0.51  Score=23.29  Aligned_cols=14  Identities=29%  Similarity=0.375  Sum_probs=7.2

Q ss_pred             CCCCEeeccccccc
Q 040237          205 SSLRFLSLQNCLVQ  218 (219)
Q Consensus       205 ~~L~~L~ls~N~l~  218 (219)
                      ++|++|++++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            45666666666653

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	219
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-04
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-04
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-04

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 116 IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL 175
           IPP IA L++L YL ++ +  +G IP  + ++  LV+LD S N  SG  L    +SL NL
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNL 151
Query: 176 V 176
           V
Sbjct: 152 V 152

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF-LELGK 169
           EIP  ++N + L++++LS++  TG+IP  I  L NL  L LS N +SG    ELG 
Sbjct: 478 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF-LELGK 169
           EIP  ++N + L++++LS++  TG+IP  I  L NL  L LS N +SG    ELG 
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 83.4 bits (207), Expect = 2e-19
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 45/190 (23%)

Query: 37  ICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAASK------VPS 90
           +C+  ++ ALLQ K+ L             P        ++SW              +  
Sbjct: 2   LCNPQDKQALLQIKKDL-----------GNP------TTLSSWLPTTDCCNRTWLGVLCD 44

Query: 91  TLAAAFSILSILSGNLAGNDFR-YPEIPPEIANLSRLSYLNLSDS-FFTGQIPSEILELS 148
           T    + + ++   +L+G +      IP  +ANL  L++L +       G IP  I +L+
Sbjct: 45  TDTQTYRVNNL---DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 149 NLVSLDLSGNGYSGGF-LELGKTSLTNLVQKLTNLETLNLGRVLIFNT---PIPHNLGNL 204
            L  L ++    SG     L          ++  L TL+      +N     +P ++ +L
Sbjct: 102 QLHYLYITHTNVSGAIPDFLS---------QIKTLVTLDFS----YNALSGTLPPSISSL 148

Query: 205 SSLRFLSLQN 214
            +L  ++   
Sbjct: 149 PNLVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.0 bits (180), Expect = 2e-15
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 12/102 (11%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF-LELGKTSLT 173
            IPP IA L++L YL ++ +  +G IP  + ++  LV+LD S N  SG     +      
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS----- 146

Query: 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSL-RFLSLQN 214
                L NL  +        +  IP + G+ S L   +++  
Sbjct: 147 ----SLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISR 183

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 17/101 (16%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174
           +IPP  ANL+ L++++LS +   G          N   + L+ N  +    ++G      
Sbjct: 189 KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG------ 241

Query: 175 LVQKLTNLETLNLGRVLIFNT---PIPHNLGNLSSLRFLSL 212
                 NL  L+L      N     +P  L  L  L  L++
Sbjct: 242 ---LSKNLNGLDLRN----NRIYGTLPQGLTQLKFLHSLNV 275

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.4 bits (163), Expect = 3e-13
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 18/119 (15%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLV-SLDLSGNGYSGG 163
           + + N      +PP I++L  L  +    +  +G IP      S L  S+ +S N  +G 
Sbjct: 131 DFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNT---PIPHNLGNLSSLRFLSLQNCLVQG 219
                  +  NL     NL  ++L R    N          G+  + + + L    +  
Sbjct: 190 IPP----TFANL-----NLAFVDLSR----NMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 115 EIPPEIANLSRLSYLNLSDSF----FTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT 170
           +I  ++ N + LS    +       + G +     +   + +LDLSG      +      
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY------ 66

Query: 171 SLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
            + + +  L  L  L +G +     PIP  +  L+ L +L + +  V G
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 118 PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG 162
            ++     L+ L+L ++   G +P  + +L  L SL++S N   G
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGN 158
            +P  +  L  L  LN+S +   G+IP     L        + N
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 16/117 (13%)

Query: 118 PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF----------LEL 167
           P + + S L +L++S +  +G     I   + L  L++S N + G            L L
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL 276

Query: 168 GKTSLT-----NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
            +   T      L      L  L+L     F   +P   G+ S L  L+L +    G
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSNNFSG 332

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.9 bits (185), Expect = 6e-16
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 15/103 (14%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174
           +IPP ++N S L  L+LS ++ +G IPS +  LS L  L L  N   G   +     L  
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ----ELMY 464

Query: 175 LVQKLTNLETLNLGRVLIFNT---PIPHNLGNLSSLRFLSLQN 214
               +  LETL L      N     IP  L N ++L ++SL N
Sbjct: 465 ----VKTLETLILDF----NDLTGEIPSGLSNCTNLNWISLSN 499

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.6 bits (184), Expect = 9e-16
 Identities = 40/222 (18%), Positives = 65/222 (29%), Gaps = 62/222 (27%)

Query: 30  TASSVLPICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEA----- 84
           +  +        E   L+ FK+ L                      +  W   +      
Sbjct: 1   SFQASPSQSLYREIHQLISFKDVLPDK-----------------NLLPDWSSNKNPCTFD 43

Query: 85  -----ASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQ 139
                  KV S        + + S  L      +  +   + +L+ L  L LS+S   G 
Sbjct: 44  GVTCRDDKVTS--------IDLSSKPLNVG---FSAVSSSLLSLTGLESLFLSNSHINGS 92

Query: 140 IPSEILELSNLVSLDLSGNGYSGGF---LELGK-TSLTNL---------------VQKLT 180
           +       ++L SLDLS N  SG       LG  + L  L                 KL 
Sbjct: 93  VS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151

Query: 181 NLETLNLGRVLIFNTPIPHNL---GNLSSLRFLSLQNCLVQG 219
           +LE L+L      +               L+ L++    + G
Sbjct: 152 SLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKISG 192

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.0 bits (180), Expect = 3e-15
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 19/132 (14%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILE---LSNLVSLDLSGNGYS 161
           N++ N   +P        L+ L  L+LS +  +G      +       L  L +SGN  S
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191

Query: 162 GGFLELGK-TSLTNL-------------VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSL 207
           G  +++ +  +L  L             +   + L+ L++      +      +   + L
Sbjct: 192 GD-VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK-LSGDFSRAISTCTEL 249

Query: 208 RFLSLQNCLVQG 219
           + L++ +    G
Sbjct: 250 KLLNISSNQFVG 261

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.4 bits (168), Expect = 9e-14
 Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 15/129 (11%)

Query: 87  KVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILE 146
            +PS+L +  S L  L   L  N     EIP E+  +  L  L L  +  TG+IPS +  
Sbjct: 433 TIPSSLGS-LSKLRDL--KLWLNML-EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 147 LSNLVSLDLSGNGYSGGF-LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLS 205
            +NL  + LS N  +G     +G         +L NL  L L     F+  IP  LG+  
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIG---------RLENLAILKLSNNS-FSGNIPAELGDCR 538

Query: 206 SLRFLSLQN 214
           SL +L L  
Sbjct: 539 SLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 3e-13
 Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 17/120 (14%)

Query: 105 NLAGNDFRYPEIPPEIA-NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163
           +LA N F    IP  ++     L+ L+LS + F G +P      S L SL LS N +SG 
Sbjct: 275 SLAENKFTGE-IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNT---PIPHNLGNLS-SLRFLSLQNCLVQG 219
                     + + K+  L+ L+L     FN     +P +L NLS SL  L L +    G
Sbjct: 334 LPM-------DTLLKMRGLKVLDLS----FNEFSGELPESLTNLSASLLTLDLSSNNFSG 382

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 14/135 (10%)

Query: 87  KVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIAN--LSRLSYLNLSDSFFTGQIPSEI 144
           ++P +L    + L  L  +L+ N+F  P I P +     + L  L L ++ FTG+IP  +
Sbjct: 358 ELPESLTNLSASLLTL--DLSSNNFSGP-ILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 145 LELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNL 204
              S LVSL LS N  SG        ++ + +  L+ L  L L   +     IP  L  +
Sbjct: 415 SNCSELVSLHLSFNYLSG--------TIPSSLGSLSKLRDLKLWLNM-LEGEIPQELMYV 465

Query: 205 SSLRFLSLQNCLVQG 219
            +L  L L    + G
Sbjct: 466 KTLETLILDFNDLTG 480

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG--------FLE 166
           EIP  I  L  L+ L LS++ F+G IP+E+ +  +L+ LDL+ N ++G           +
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564

Query: 167 LGKTSLTNL----VQKLTNLETLNL-GRVLIFNTPIPHNLGNLSSLRFLSLQN 214
           +    +       ++     +  +  G +L F       L  LS+    ++ +
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 12/104 (11%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF-LELGKTSLT 173
               ++  LS  +  N++   + G          +++ LD+S N  SG    E+G     
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG----- 653

Query: 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL-QNCL 216
                +  L  LNLG     +  IP  +G+L  L  L L  N L
Sbjct: 654 ----SMPYLFILNLGHND-ISGSIPDEVGDLRGLNILDLSSNKL 692

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174
            IP EI ++  L  LNL  +  +G IP E+ +L  L  LDLS N   G   +    +++ 
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ----AMSA 702

Query: 175 LVQKLTNLETLNL 187
               LT L  ++L
Sbjct: 703 ----LTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 18/128 (14%)

Query: 99  LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGN 158
           L+IL   L+ N F    IP E+ +   L +L+L+ + F G IP+ + + S  ++ +    
Sbjct: 516 LAIL--KLSNNSF-SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572

Query: 159 GYSGGFLELGKTSLTNL--------------VQKLTNLETLNLGRVLIFNTPIPHNLGNL 204
                    G     +               + +L+     N+    ++         N 
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR-VYGGHTSPTFDNN 631

Query: 205 SSLRFLSL 212
            S+ FL +
Sbjct: 632 GSMMFLDM 639

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.2 bits (177), Expect = 6e-15
 Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 2/117 (1%)

Query: 99  LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGN 158
           +     N       Y       +NL  L+ + L +     Q+P  + +L  L SL+++ N
Sbjct: 467 VDWEDANSDYAKQ-YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525

Query: 159 GYSGGFLELGK-TSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
                       T L +       ++   +G   +   P   +L  +  L  L   +
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 20/118 (16%)

Query: 119 EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT----- 173
           ++ N  R++ L+L+     G++P  I +L+ L  L    +  +      G   LT     
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 174 ------------NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
                         +     L   +L +  I   P    +  +     +SL++  +  
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP---EMKPIKKDSRISLKDTQIGN 432

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 4e-09
 Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 35/128 (27%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTG-------------------QIPSEILELSNLVSLDL 155
            I   I  L++L  +  ++S FT                            L +L  ++L
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498

Query: 156 SGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGR--------VLIFNTPIPHNLGNLSSL 207
                           L + +  L  L++LN+          +    T +  +      +
Sbjct: 499 YNCPNMT--------QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 208 RFLSLQNC 215
           +   +   
Sbjct: 551 QIFYMGYN 558

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 5e-09
 Identities = 25/196 (12%), Positives = 53/196 (27%), Gaps = 27/196 (13%)

Query: 41  DERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAASKVPSTLAAAFSILS 100
            +  AL    E L       ++   Y  +        +W   +                 
Sbjct: 269 KDYKALKAIWEALD-----GKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNG 323

Query: 101 ILSG-NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG 159
            ++G +LAG   +   +P  I  L+ L  L+      T        E       +   + 
Sbjct: 324 RVTGLSLAGFGAKG-RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 160 YSGGFLELGKTSLTNL------------------VQKLTNLETLNLGRVLIFN--TPIPH 199
               + ++       L                  ++K + +   +     + N  T I  
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 200 NLGNLSSLRFLSLQNC 215
            +  L+ L+ +   N 
Sbjct: 443 AIQRLTKLQIIYFANS 458

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 15/119 (12%), Positives = 38/119 (31%), Gaps = 21/119 (17%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNL------SDSFFTGQIPSEILELSNLVSLDLSGN 158
           +++ N F     P +  N S+L    +        +    Q P+ I    +L+ L +  N
Sbjct: 759 DVSYNCFS--SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816

Query: 159 GYSGGFLELGKTSLTNL-VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCL 216
                        +  +  +    L  L++      +  +      + +  ++ L +  
Sbjct: 817 ------------DIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 1/99 (1%)

Query: 116 IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL 175
              +       S + LS +             S + ++ LS N  +    E         
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN 723

Query: 176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
            +    L T++L    + +         L  L  + +  
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY 762

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 7e-08
 Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 24/123 (19%)

Query: 102 LSGN----LAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSE--ILELSNLVSLDL 155
           ++ N     A     +  +  +     ++    +  +      P+   + ++  L  LD 
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDC 580

Query: 156 SGNGYSGGFLELGKTSLTNL--VQKLTNLETLNLGRVLIFNTPIPHNLG-NLSSLRFLSL 212
             N             + +L        L  L L    I    IP +       +  L  
Sbjct: 581 VHN------------KVRHLEAFGTNVKLTDLKLDYNQI--EEIPEDFCAFTDQVEGLGF 626

Query: 213 QNC 215
            + 
Sbjct: 627 SHN 629

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 18/133 (13%), Positives = 30/133 (22%), Gaps = 28/133 (21%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSGG 163
           +   N               +L+ L L  +    +IP +       +  L  S N     
Sbjct: 579 DCVHNKV---RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI 634

Query: 164 FLELGKTSLTNL----------------------VQKLTNLETLNLGRVLIFNTPIPHNL 201
                  S+  +                        K  N  T+ L    I         
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-QKFPTELF 693

Query: 202 GNLSSLRFLSLQN 214
              S +  + L N
Sbjct: 694 ATGSPISTIILSN 706

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 20/104 (19%)

Query: 118 PEIANLSRLSYLNLSDSFFTG------QIPSEILELSNLVSLDLSGNGYSGGFLELGKTS 171
           PE+  + + S ++L D+           I   I  L+ L  +  + +             
Sbjct: 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS------------P 459

Query: 172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
            T     +   +  +             +  NL  L  + L NC
Sbjct: 460 FTYDNIAVDWEDANSDY--AKQYENEELSWSNLKDLTDVELYNC 501

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 19/140 (13%), Positives = 41/140 (29%), Gaps = 21/140 (15%)

Query: 86  SKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS--- 142
            ++P    A    +  L    + N  +Y        ++  +  ++ S +    +  +   
Sbjct: 608 EEIPEDFCAFTDQVEGL--GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 143 --EILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGR------VLIFN 194
             +  +  N  ++ LS N              T L    + + T+ L             
Sbjct: 666 SMDDYKGINASTVTLSYNEIQK--------FPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 195 TPIPHNLGNLSSLRFLSLQN 214
            P   N  N   L  + L+ 
Sbjct: 718 KPKDGNYKNTYLLTTIDLRF 737

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 12/99 (12%), Positives = 34/99 (34%)

Query: 116 IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL 175
              +  NL  L+ + + +     ++P+ +  L  +  ++++ N    G            
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
                 ++ + +G   +   P+  +L  +  L  L    
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 1/101 (0%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174
            + P       +S +NLS++  +          S L S++L GN  +       K    N
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
             +    L +++L    +           L  L  + L   
Sbjct: 484 F-KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 29/204 (14%), Positives = 58/204 (28%), Gaps = 28/204 (13%)

Query: 39  HDDERSALLQFKEGLIIN----VPIEESHHNYPWSY--ECRPKVASWKQGEAASKVPSTL 92
            D      L      I +      I ++ +   WS         A+W   +      +  
Sbjct: 14  DDAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQP 73

Query: 93  AAAFSILSILSG-NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQ----IPSEILEL 147
             + +    ++G +L G       +P  I  L+ L  L L             P  I   
Sbjct: 74  GVSLNSNGRVTGLSLEGFGAS-GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN 132

Query: 148 SNLVSLDLSGNGYSGGFL-ELGKTSLTNLVQ-------------KLTNLETLNLGRVLIF 193
            +          Y   F+    +   ++L++             K + +   +     + 
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

Query: 194 N--TPIPHNLGNLSSLRFLSLQNC 215
           N  T +   +  L+ LR   + N 
Sbjct: 193 NNITFVSKAVMRLTKLRQFYMGNS 216

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 17/114 (14%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
            +  N+ +   +   +  + +L  L    +   G++P        L SL+L+ N      
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN------ 363

Query: 165 LELGKTSLT----NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
                  +T    N       +E L+     +   P   +  ++S +  +    
Sbjct: 364 ------QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 14/100 (14%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174
            +   +  L++L    + +S F  +   E  E  N                         
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-------------EDL 243

Query: 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
               L +L  + +       T +P  L  L  ++ +++  
Sbjct: 244 KWDNLKDLTDVEVYN-CPNLTKLPTFLKALPEMQLINVAC 282

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 24/139 (17%), Positives = 40/139 (28%), Gaps = 31/139 (22%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTG-------QIPSEILELSNLVSLDLS 156
           NL+ N     + P E+ +  S LS +NL  +  T                   L S+DL 
Sbjct: 439 NLSNNQIS--KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 157 GNGYSGGFLELGKTSLTNL----------------VQKLTNLETLNLGRVLI-----FNT 195
            N  +    +   T+L  L                    + L+   +             
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 196 PIPHNLGNLSSLRFLSLQN 214
             P  +    SL  L + +
Sbjct: 557 EWPEGITLCPSLTQLQIGS 575

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 13/117 (11%), Positives = 34/117 (29%), Gaps = 15/117 (12%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
               N        P   +  +L+ LNL+ +  T    +       + +L  + N      
Sbjct: 336 ECLYNQLE--GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN------ 387

Query: 165 LELGKTSLTNLVQKLTNLETLNL------GRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
            +L         + ++ +  ++               P+        ++  ++L N 
Sbjct: 388 -KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 22/115 (19%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDS------FFTGQIPSEILELSNLVSLDLSGN 158
           +L+ N F   + P +  N S L    + +           + P  I    +L  L +  N
Sbjct: 519 DLSYNSFS--KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

Query: 159 GYSGGFLELGKTSLTNLVQK-LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
                        +  + +K   N+  L++      +  + + +          L
Sbjct: 577 ------------DIRKVNEKITPNISVLDIKDNPNISIDLSY-VCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 18/93 (19%), Positives = 27/93 (29%), Gaps = 11/93 (11%)

Query: 130 NLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGR 189
           N     +  Q    +     +  L L G G SG         + + + +LT LE L LG 
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASG--------RVPDAIGQLTELEVLALGS 114

Query: 190 ---VLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
               +      P  +    S           Q 
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 9/115 (7%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           +L+  + +         +LS LS L L+ +            LS+L  L       +   
Sbjct: 58  DLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-- 114

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
                      +  L  L+ LN+   LI +  +P    NL++L  L L +  +Q 
Sbjct: 115 ------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           +   ++ +         +L  L YL++S +            LS+L  L ++GN +   F
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
           L        ++  +L NL  L+L +  +     P    +LSSL+ L++ +
Sbjct: 462 LP-------DIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSH 503

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 11/112 (9%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEIL-ELSNLVSLDLSGNGYSGG 163
           +L+ N      +      L +L +L+   S         +   L NL+ LD+S       
Sbjct: 379 DLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV- 435

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
                  +   +   L++LE L +         +P     L +L FL L  C
Sbjct: 436 -------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
            L GN  +        + LS L  L   ++         I  L  L  L+++ N      
Sbjct: 82  ILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF- 139

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQ 213
                  L      LTNLE L+L       +    +L  L  +  L+L 
Sbjct: 140 ------KLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLS 181

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 13/114 (11%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNL----VSLDLSGNGY 160
           N+A N  +  ++P   +NL+ L +L+LS +       +++  L  +    +SLDLS N  
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 161 SGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
           +                K   L  L L         +   +  L+ L    L  
Sbjct: 190 NFIQPGAF---------KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 10/111 (9%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
            +AGN F+   +P     L  L++L+LS        P+    LS+L  L++S N +    
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-- 508

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNL-SSLRFLSLQN 214
                   T   + L +L+ L+     I  T     L +  SSL FL+L  
Sbjct: 509 ------LDTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 11/106 (10%)

Query: 116 IPPEIANLSRLSYLNLSDSF--FTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT 173
                 +L  L +L+LS +   F G         ++L  LDLS NG           +++
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV---------ITMS 389

Query: 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
           +    L  LE L+     +          +L +L +L + +   + 
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 8/116 (6%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSD-SFFTGQIPSEILELSNLVSLDLSGNGYSGG 163
                +         I +L  L  LN++     + ++P     L+NL  LDLS N     
Sbjct: 106 VAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS- 163

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
              +  T L  L Q      +L+L    +    I         L  L+L+N     
Sbjct: 164 ---IYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLHKLTLRNNFDSL 214

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 95  AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILE---LSNLV 151
           AF  + +    L  N      +   I  L+ L    L    F  +   E  +   L  L 
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 152 SLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLS 211
           +L +     +  +L+     + +L   LTN+ + +L  V I       +       + L 
Sbjct: 256 NLTIEEFRLA--YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLE 310

Query: 212 LQNC 215
           L NC
Sbjct: 311 LVNC 314

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 17/116 (14%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           +L        E   + +      +L L +  F      ++  L  L      G       
Sbjct: 288 SLVSVTI---ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE- 343

Query: 165 LELGKTSLTNLVQKLTNLETLNLGR-VLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
                         L +LE L+L R  L F      +    +SL++L L    V  
Sbjct: 344 ------------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 6e-11
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 2/111 (1%)

Query: 105 NLAGNDFRY-PEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163
            L     +     P     L  L+ L+LS++         +  L  L  LDL  N  +  
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
           +           ++ L++L  LNL      +        +L  L+ + L  
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGL 569

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 10/111 (9%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           ++  N       P     L  L  LNL  +  +          +NL  L L  N      
Sbjct: 55  DVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-- 111

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
             +             NL TL+L    + +T        L +L+ L L N 
Sbjct: 112 --IKNNPFVK----QKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNN 155

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 10/110 (9%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           NL  N  R           S+L+ L++  +  +   P    +L  L  L+L  N      
Sbjct: 31  NLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN----EL 85

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
            +L   +        TNL  L+L    I      +      +L  L L +
Sbjct: 86  SQLSDKTFAF----CTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSH 130

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 28/121 (23%), Positives = 40/121 (33%), Gaps = 8/121 (6%)

Query: 95  AFSILSILSG-NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSL 153
           AFS L  L   +L  N+        E   L  +  + LS + +     +    + +L  L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 154 DLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQ 213
            L               S  +  Q L NL  L+L    I        L  L  L  L LQ
Sbjct: 460 MLRRVALKNV------DSSPSPFQPLRNLTILDLSNNNI-ANINDDMLEGLEKLEILDLQ 512

Query: 214 N 214
           +
Sbjct: 513 H 513

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 3/116 (2%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           +L+ N+          A L +L Y  L  +         +  L N+  L+L  +      
Sbjct: 254 DLSYNNLNVV-GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 165 LELGKTSLTNLV-QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
                  + +   Q L  LE LN+    I      +    L +L++LSL N     
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDI-PGIKSNMFTGLINLKYLSLSNSFTSL 367

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 13/114 (11%)

Query: 105 NLAGNDFRYPEIPPE-IANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSG 162
           NL  N     +I  +  + L  L  L+L  +    ++  +    L N+  + LS N Y  
Sbjct: 387 NLTKNKIS--KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 163 GFLELGKTSLTNLVQKLTNLETLNLGRVLI-FNTPIPHNLGNLSSLRFLSLQNC 215
               L + S   +     +L+ L L RV +      P     L +L  L L N 
Sbjct: 445 ----LTRNSFALV----PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 27/142 (19%), Positives = 41/142 (28%), Gaps = 24/142 (16%)

Query: 102 LSGNLAGNDFRYPEI----PPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSG 157
           L  +          +          L  L +LN+ D+   G   +    L NL  L LS 
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 158 NGYSGG------FLELGKTSLTNL--------------VQKLTNLETLNLGRVLIFNTPI 197
           +  S        F+ L  + L  L                 L +LE L+LG   I     
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 198 PHNLGNLSSLRFLSLQNCLVQG 219
                 L ++  + L       
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 30/137 (21%), Positives = 43/137 (31%), Gaps = 23/137 (16%)

Query: 105 NLAGNDFRY-PEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG- 162
            L+ N  +       +I   S L  L LS +      P     +  L  L L+       
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210

Query: 163 ----GFLELGKTSLTNLV----------------QKLTNLETLNLGRVLIFNTPIPHNLG 202
                 LEL  TS+ NL                  K TNL  L+L    + N     +  
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL-NVVGNDSFA 269

Query: 203 NLSSLRFLSLQNCLVQG 219
            L  L +  L+   +Q 
Sbjct: 270 WLPQLEYFFLEYNNIQH 286

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 19/142 (13%)

Query: 88  VPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANL--SRLSYLNLSDSFFTGQIPSEIL 145
           +   L    +  SI + +L+ +             L  + L+ L+LS +           
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTT-SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 146 ELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLI--------FNTPI 197
            L  L    L  N        L   SL      L N+  LNL R                
Sbjct: 270 WLPQLEYFFLEYN----NIQHLFSHSLHG----LFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 198 PHNLGNLSSLRFLSLQNCLVQG 219
             +   L  L  L++++  + G
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPG 343

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 11/118 (9%)

Query: 105 NLAGNDFRYPEIPPEI---ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYS 161
           +L+ +      +  E       S L  LNL+ +  +         L +L  LDL  N   
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN--- 415

Query: 162 GGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
               E+G+       + L N+  + L           ++   + SL+ L L+   ++ 
Sbjct: 416 ----EIGQELTGQEWRGLENIFEIYLSYNKY-LQLTRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 27/120 (22%), Positives = 40/120 (33%), Gaps = 18/120 (15%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTG--QIPSEILELSNLVSLDLSGNGYSG 162
            L+ N +         A +  L  L L           PS    L NL  LDLS N  + 
Sbjct: 436 YLSYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 163 GFLELGKTSLTNLVQKLTNLETLNLGR-------VLIFNTPIPHNLGNLSSLRFLSLQNC 215
                      ++++ L  LE L+L                  + L  LS L  L+L++ 
Sbjct: 495 --------INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 8/99 (8%)

Query: 116 IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL 175
               +  LS L  LNL  + F         +L  L  +DL  N  +     L  +   N 
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT----LPASVFNN- 582

Query: 176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
                +L++LNL + LI +           +L  L ++ 
Sbjct: 583 ---QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 15/116 (12%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEI--LELSNLVSLDLSGNGYSG 162
           +L+ N             L  L  L LS++        E+     S+L  L+LS N    
Sbjct: 127 DLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN---- 181

Query: 163 GFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLG---NLSSLRFLSLQNC 215
              E            +  L  L L  V +    +   L      +S+R LSL N 
Sbjct: 182 QIKEFSPGCFHA----IGRLFGLFLNNVQL-GPSLTEKLCLELANTSIRNLSLSNS 232

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 125 RLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLET 184
                + S    T Q+P ++   +N+  L+L+ N        L   + T      + L +
Sbjct: 5   SHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQ----LRRLPAANFTRY----SQLTS 53

Query: 185 LNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
           L++G   I +   P     L  L+ L+LQ+  +  
Sbjct: 54  LDVGFNTI-SKLEPELCQKLPMLKVLNLQHNELSQ 87

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.2 bits (144), Expect = 9e-11
 Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 26/134 (19%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLS---------DSFFTGQIPSEILELSNLVSLDL 155
            LA N  R   +P  IA+L+RL  L++          +   +     E   L NL SL L
Sbjct: 133 TLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 156 SGNGYSG-----------GFLELGKTSLTNL---VQKLTNLETLNLGRVLIFNTPIPHNL 201
              G                L++  + L+ L   +  L  LE L+L          P   
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL-RNYPPIF 249

Query: 202 GNLSSLRFLSLQNC 215
           G  + L+ L L++C
Sbjct: 250 GGRAPLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.2 bits (144), Expect = 9e-11
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 27/125 (21%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG-----YSGGFL---- 165
           + P +   LS L ++ +  +    ++P  + + + L +L L+ N       S   L    
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153

Query: 166 ---------------ELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFL 210
                           L  T  +   Q L NL++L L    I    +P ++ NL +L+ L
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--RSLPASIANLQNLKSL 211

Query: 211 SLQNC 215
            ++N 
Sbjct: 212 KIRNS 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 17/115 (14%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
            +  +      + P I +L +L  L+L         P      + L  L L         
Sbjct: 212 KIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC------ 263

Query: 165 LELGKTSLTNL---VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCL 216
                ++L  L   + +LT LE L+L   +   + +P  +  L +   + +   L
Sbjct: 264 -----SNLLTLPLDIHRLTQLEKLDLRGCVNL-SRLPSLIAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174
             PP     + L  L L D      +P +I  L+ L  LDL G            + L +
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL--------SRLPS 295

Query: 175 LVQKLTNLETLNLGRVLIFNTP 196
           L+ +L     + +   L     
Sbjct: 296 LIAQLPANCIILVPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 11/112 (9%), Positives = 23/112 (20%), Gaps = 15/112 (13%)

Query: 117 PPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL- 175
                + S    L    S         + +     + D +    +          +    
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 176 ------------VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
                                L L  V +     P     LS L+ +++   
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAA 114

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 10/112 (8%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           +L        E+P  +  LS L  L LS + F            +L  L + GN      
Sbjct: 284 DLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL-- 339

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPI-PHNLGNLSSLRFLSLQNC 215
                   T  ++ L NL  L+L    I  +      L NLS L+ L+L   
Sbjct: 340 -----ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           +LA    +  +      NL  L  LNLS S            L  L  L+L GN +  G 
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
           ++      TN +Q L  LE L L    + +    H   +L  +  + L +
Sbjct: 466 IQ-----KTNSLQTLGRLEILVLSFCDLSSID-QHAFTSLKMMNHVDLSH 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 12/112 (10%)

Query: 105 NLAGNDFRYPEIPPE-IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163
           +L         I  +   +  RL  L L+ +       + +     L  L         G
Sbjct: 63  DLTRCQIY--WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT----G 116

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
              +    L N       LE+L LG   I +            L+ L  QN 
Sbjct: 117 ISSIDFIPLHN----QKTLESLYLGSNHISSIK-LPKGFPTEKLKVLDFQNN 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 24/141 (17%)

Query: 99  LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEI--LELSNLVSLDLS 156
            + LS NL GND     I P   + +    LN   +     I   +    + +L      
Sbjct: 179 ATNLSLNLNGNDIA--GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 157 GNGYS----GGFLELGKTSLTNLV--------------QKLTNLETLNLGRVLIFNTPIP 198
                      F  L + S+ ++                  + L+ L+L    +  + +P
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL--SELP 294

Query: 199 HNLGNLSSLRFLSLQNCLVQG 219
             L  LS+L+ L L     + 
Sbjct: 295 SGLVGLSTLKKLVLSANKFEN 315

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 10/117 (8%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFT--GQIPSEILELSNLVSLDLSGNGYSG 162
           ++ GN  R       + NL  L  L+LS            ++  LS+L SL+LS N    
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 163 GFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
               L   +          LE L+L    +          NL  L+ L+L + L+  
Sbjct: 391 ----LKTEAFKEC----PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 31/131 (23%), Positives = 43/131 (32%), Gaps = 20/131 (15%)

Query: 105 NLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGN----- 158
           +L+ +D    +    ++ NLS L  LNLS +           E   L  LDL+       
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415

Query: 159 GYSGGF--------LELGKTSLTNL----VQKLTNLETLNLG--RVLIFNTPIPHNLGNL 204
                F        L L  + L          L  L+ LNL        N    ++L  L
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 205 SSLRFLSLQNC 215
             L  L L  C
Sbjct: 476 GRLEILVLSFC 486

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 12/109 (11%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163
            L  N      +     +    L +L    +  +      +     L SL L  N  S  
Sbjct: 87  VLTANPLI--FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS- 143

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
              +              L+ L+     I       ++ +L     LSL
Sbjct: 144 ---IKLPKGFP----TEKLKVLDFQNNAIHYLS-KEDMSSLQQATNLSL 184

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 12/111 (10%)

Query: 105 NLAGNDFRYPEIPPE-IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163
             + N      I     + L  L++L+L+                 L +L L+ N     
Sbjct: 39  EFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN----P 92

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
            + + +T+L+        L+ L   +  I ++     L N  +L  L L +
Sbjct: 93  LIFMAETALSG----PKALKHLFFIQTGI-SSIDFIPLHNQKTLESLYLGS 138

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 11/119 (9%)

Query: 97  SILSILSGNLAGNDFRY-PEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDL 155
           +I S+  G     D         E      +  +NL   +F     +     S L  LDL
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 156 SGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
           +             + L + +  L+ L+ L L            +  N  SL  LS++ 
Sbjct: 286 TATHL---------SELPSGLVGLSTLKKLVLSANKF-ENLCQISASNFPSLTHLSIKG 334

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 12/112 (10%)

Query: 105 NLAGNDFRY--PEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG 162
           NL GN F     +    +  L RL  L LS    +         L  +  +DLS N    
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN---- 510

Query: 163 GFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
                   +L++L         LNL    I +  +P  L  LS  R ++L+ 
Sbjct: 511 RLTSSSIEALSHL-----KGIYLNLASNHI-SIILPSLLPILSQQRTINLRQ 556

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG-GFLELGKTSLT 173
           E+P E  N+   +    + S +    P    E   +    L          LEL    L+
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
           +L +   +LE+L      +  T +P    +L SL   +   
Sbjct: 85  SLPELPPHLESLVASCNSL--TELPELPQSLKSLLVDNNNL 123

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 24/126 (19%), Positives = 37/126 (29%), Gaps = 32/126 (25%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS---------------EILELSN 149
             + N     E+P    +L  L   N +    +   P                E+   S 
Sbjct: 97  VASCNSLT--ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSF 154

Query: 150 LVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRF 209
           L  +D+  N            SL  L     +LE +  G   +    +P  L NL  L  
Sbjct: 155 LKIIDVDNN------------SLKKLPDLPPSLEFIAAGNNQL--EELP-ELQNLPFLTA 199

Query: 210 LSLQNC 215
           +   N 
Sbjct: 200 IYADNN 205

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF-----LELGK 169
           E  PE+ NL  L+ +   ++     +P     L  L   D               L++ +
Sbjct: 228 EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE 286

Query: 170 TSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSL 207
              + L +   NL  LN     I    +     +L  L
Sbjct: 287 NIFSGLSELPPNLYYLNASSNEI--RSLCDLPPSLEEL 322

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 22/110 (20%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           ++  N  +  ++P    +L    ++   ++        E+  L  L ++    N      
Sbjct: 159 DVDNNSLK--KLPDLPPSLE---FIAAGNNQLE--ELPELQNLPFLTAIYADNN------ 205

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
                 SL  L     +LE++  G  ++        L NL  L  +   N
Sbjct: 206 ------SLKKLPDLPLSLESIVAGNNIL---EELPELQNLPFLTTIYADN 246

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 23/131 (17%)

Query: 105 NLAGNDFRYPEIPPE-IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGN----- 158
           +L+ N   +     +     + L YL+LS +     + S  L L  L  LD   +     
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 159 GYSGGFLELGKTSLTNL--------------VQKLTNLETLNLGRVLIFNTPIPHNLGNL 204
                FL L   +L  L                 L++LE L +         +P     L
Sbjct: 412 SEFSVFLSL--RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 205 SSLRFLSLQNC 215
            +L FL L  C
Sbjct: 470 RNLTFLDLSQC 480

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 11/112 (9%)

Query: 105 NLAGNDFRYPEIPPE-IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163
           +L+  + +   I      +LS LS L L+ +            LS+L  L       +  
Sbjct: 58  DLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-- 113

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
                 +     +  L  L+ LN+   LI +  +P    NL++L  L L + 
Sbjct: 114 ------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 13/113 (11%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNL----VSLDLSGNGY 160
           N+A N  +  ++P   +NL+ L +L+LS +       +++  L  +    +SLDLS N  
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 161 SGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQ 213
                      +     K   L  L L         +   +  L+ L    L 
Sbjct: 190 ---------NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 13/103 (12%)

Query: 115 EIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSGGFLELGKTSL 172
                I   LS L  L ++ + F      +I   L NL  LDLS               L
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE---------QL 485

Query: 173 TNLV-QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
           +      L++L+ LN+    + + P       L+SL+ + L  
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 25/143 (17%)

Query: 89  PSTLAAAFSILSIL-SGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILEL 147
              +   F+ L+ + S +L        +          L  +N     F        L+L
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKL 324

Query: 148 SNLVSLDLSGNGYSGGFLELGKTSLTNL----------------VQKLTNLETLNLGRVL 191
            +L  L  + N     F E+   SL  L                    T+L+ L+L    
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 192 IFNTPIPHNLGNLSSLRFLSLQN 214
           +    +  N   L  L  L  Q+
Sbjct: 385 V--ITMSSNFLGLEQLEHLDFQH 405

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 1/125 (0%)

Query: 95  AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSL- 153
           AF  + +    L  N      +   I  L+ L    L    F  +   E  + S L  L 
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 154 DLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQ 213
           +L+   +   +L+     + +L   LTN+ + +L  V I              L  ++ +
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 214 NCLVQ 218
                
Sbjct: 316 FGQFP 320

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 11/111 (9%)

Query: 105 NLAGNDFRYPEIPPE-IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163
           +L+  +     I  +    L  LS L L+ +      P     L++L +L          
Sbjct: 62  DLSRCEIE--TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET----K 115

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
              L    +      L  L+ LN+    I +  +P    NL++L  + L  
Sbjct: 116 LASLESFPIGQ----LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           +   +  +         +L +L YL++S +          L L++L +L ++GN +    
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
           L        N+    TNL  L+L +  +           L  L+ L++ +
Sbjct: 465 LS-------NVFANTTNLTFLDLSKCQL-EQISWGVFDTLHRLQLLNMSH 506

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 11/112 (9%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSGG 163
           +L+ N      +      L  L +L+   S             L  L+ LD+S       
Sbjct: 382 DLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK-- 437

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
                      +   LT+L TL +      +  + +   N ++L FL L  C
Sbjct: 438 ------IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
            +AGN F+   +    AN + L++L+LS              L  L  L++S N      
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN----NL 509

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
           L L  +        L +L TL+     I  T          SL F +L N
Sbjct: 510 LFLDSSHYNQ----LYSLSTLDCSFNRI-ETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNL----VSLDLSGNGY 160
           N+A N     ++P   +NL+ L +++LS ++      +++  L       +SLD+S N  
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN-- 191

Query: 161 SGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
               +      + +   +   L  L L      +  +   L NL+ L    L     + 
Sbjct: 192 ---PI----DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 11/109 (10%)

Query: 105 NLAGNDFRYPEIPPE-IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163
            L GN  +     P   + L+ L  L   ++         I +L  L  L+++ N     
Sbjct: 86  ILTGNPIQ--SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS- 142

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
                   L      LTNL  ++L    I  T   ++L  L     ++L
Sbjct: 143 ------CKLPAYFSNLTNLVHVDLSYNYI-QTITVNDLQFLRENPQVNL 184

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 23/143 (16%)

Query: 90  STLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSN 149
             L          S ++     +  + P    +L  L  L L+ +   G I  + + L +
Sbjct: 298 KYLEDVPKHFKWQSLSIIRCQLK--QFPT--LDLPFLKSLTLTMN--KGSISFKKVALPS 351

Query: 150 LVSLDLSGNG----YSGGFLELGKTSLTNL-------------VQKLTNLETLNLGRVLI 192
           L  LDLS N         + +LG  SL +L                L  L+ L+     +
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTL 411

Query: 193 FNTPIPHNLGNLSSLRFLSLQNC 215
                     +L  L +L +   
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYT 434

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 16/130 (12%)

Query: 98  ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSF--FTGQIPSEILELSNLVSLDL 155
           +  ++ G            P  +  L  ++      ++         +   L+N+ ++ L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 156 SGN----------GYSGGFLELGKTSLTNLV-QKLTNLETLNLGRVLIFNTPIPHNLGNL 204
           +G            +    L + +  L       L  L++L L         I      L
Sbjct: 293 AGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG---SISFKKVAL 349

Query: 205 SSLRFLSLQN 214
            SL +L L  
Sbjct: 350 PSLSYLDLSR 359

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 6e-09
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 86  SKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEIL 145
             V ++       L +L   L               NL  L  L+L  S     +  +  
Sbjct: 37  RTVTASSFPFLEQLQLL--ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAF 93

Query: 146 E-LSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNL 204
           + L +L  L L   G S   L+          + L  L  L+L +  I +  +  + G L
Sbjct: 94  QGLFHLFELRLYFCGLSDAVLK------DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147

Query: 205 SSLRFLSLQNC 215
           +SL+ +   + 
Sbjct: 148 NSLKSIDFSSN 158

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSGG 163
           +L+ N     +I   +  +  L  L L+ + F+     +      +L  L L  N     
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM---- 462

Query: 164 FLELGKTSLT-NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
                +T L  ++ + L++L+ L L    + + P P    +L++LR LSL + 
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP-PGVFSHLTALRGLSLNSN 514

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 12/113 (10%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163
           +L+        +   +   L  L  LNL+ +            L NL  L+LS N     
Sbjct: 272 DLSHGFVFS--LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN----L 325

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCL 216
             EL  ++       L  +  ++L +  I           L  L+ L L++  
Sbjct: 326 LGELYSSNFYG----LPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNA 373

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 21/125 (16%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGY--- 160
           +L  N      I  +    L +L  L+L D+  T      I  + ++  + LSGN     
Sbjct: 344 DLQKNHIAI--IQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTL 396

Query: 161 -----SGGFLELGKTSLTNL-----VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFL 210
                +   + L +  L NL     + ++ +L+ L L +    +           SL  L
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456

Query: 211 SLQNC 215
            L   
Sbjct: 457 FLGEN 461

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 13/108 (12%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILE-----LSNLVSLDLSGNG 159
            L  N F         +    L  L L ++       +E+       LS+L  L L+ N 
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN- 490

Query: 160 YSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSL 207
                  L     ++    LT L  L+L    +          NL  L
Sbjct: 491 ---YLNSLPPGVFSH----LTALRGLSLNSNRLTVLSHNDLPANLEIL 531

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 14/98 (14%)

Query: 120 IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL 179
           I+ LS L  L +     T      +  L++L  LD+S +           + LT +   L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-------AHDDSILTKI-NTL 135

Query: 180 TNLETLNLGRVLIFNTPI--PHNLGNLSSLRFLSLQNC 215
             + +++L      N  I     L  L  L+ L++Q  
Sbjct: 136 PKVNSIDLSY----NGAITDIMPLKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 13/110 (11%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
            + G D    +IP  ++ L+ L+ L++S S     I ++I  L  + S+DLS NG     
Sbjct: 94  RIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI--- 149

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
                T +  L + L  L++LN+    + +      + +   L  L   +
Sbjct: 150 -----TDIMPL-KTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 120 IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL 179
           I     +  L +++   T    + I  LSNL  L + G        ++    + NL   L
Sbjct: 62  IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGK-------DVTSDKIPNL-SGL 111

Query: 180 TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
           T+L  L++      ++ +   +  L  +  + L   
Sbjct: 112 TSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 119 EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK 178
             A ++ L+Y+ L++   T    + I    N+  L ++             T+   +   
Sbjct: 39  TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHA---------TNYNPI-SG 86

Query: 179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
           L+NLE L +    + +  IP NL  L+SL  L + + 
Sbjct: 87  LSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHS 122

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 1e-08
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 14/110 (12%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           +LA  D     +   +  L  +++L+LS +     +P  +  L  L  L  S N      
Sbjct: 447 HLAHKDL---TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN------ 496

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
             L   ++  +   L  L+ L L    +  +     L +   L  L+LQ 
Sbjct: 497 -AL--ENVDGV-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 20/142 (14%)

Query: 93  AAAFSILSILSG-NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNL 150
              F  L+ L+  +L+ N   +     +     + L YL+LS +     + S  L L  L
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL 103

Query: 151 VSLDLSGN-----GYSGGF--------LELGKTSLTNLV----QKLTNLETLNLGRVLIF 193
             LD   +          F        L++  T            L++LE L +      
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 194 NTPIPHNLGNLSSLRFLSLQNC 215
              +P     L +L FL L  C
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQC 185

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 115 EIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSGGFLELGKTSL 172
                I   LS L  L ++ + F      +I   L NL  LDLS         +L  T+ 
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC----QLEQLSPTAF 195

Query: 173 TNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
            +    L++L+ LN+     F+         L+SL+ L    
Sbjct: 196 NS----LSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSL 232

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174
            +P  I   S  + L L  +           +L+ L  L LS NG S  F      S   
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFG 76

Query: 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
                T+L+ L+L    +    +  N   L  L  L  Q+ 
Sbjct: 77  ----TTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHS 111

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 7e-08
 Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 16/109 (14%)

Query: 118 PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG----------GFLEL 167
             +ANL+++  LNL  +       S +  ++ L  L ++ +                L L
Sbjct: 126 SPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSL 184

Query: 168 GKTSLTNL--VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
               + ++  +  LT+L         I +      + N++ L  L + N
Sbjct: 185 NYNQIEDISPLASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGN 230

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 18/100 (18%)

Query: 118 PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQ 177
             ++NL +L+ L +  +  T    S +  L+NL  L L+ +           + ++ L  
Sbjct: 82  SPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNI---------SDISPL-A 129

Query: 178 KLTNLETLNLGRVLIFNTPI--PHNLGNLSSLRFLSLQNC 215
            LT + +LNLG     N  +     L N++ L +L++   
Sbjct: 130 NLTKMYSLNLG----ANHNLSDLSPLSNMTGLNYLTVTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 17/99 (17%)

Query: 118 PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL-- 175
             +ANLS+L++L +  +  +    + + +L+ L  L++  N             ++++  
Sbjct: 237 SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN------------QISDISV 282

Query: 176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
           +  L+ L +L L    +        +G L++L  L L  
Sbjct: 283 LNNLSQLNSLFLNNNQL-GNEDMEVIGGLTNLTTLFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 15/98 (15%)

Query: 120 IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL 179
            A+L+      L  +  T  +     EL ++  L ++G             S+  + + L
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV---------ASIQGI-EYL 65

Query: 180 TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217
           TNLE LNL    I +      L NL  L  L +    +
Sbjct: 66  TNLEYLNLNGNQITDIS---PLSNLVKLTNLYIGTNKI 100

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 14/73 (19%)

Query: 117 PPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL- 175
              + NLS+L+ L L+++    +    I  L+NL +L LS N             +T++ 
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN------------HITDIR 327

Query: 176 -VQKLTNLETLNL 187
            +  L+ +++ + 
Sbjct: 328 PLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 21/116 (18%)

Query: 118 PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG----------GFLEL 167
             +A+L+ L Y     +  T   P  +  ++ L SL +  N  +            +LE+
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEI 250

Query: 168 GKTSLTNL--VQKLTNLETLNLGRVLIFNTPI--PHNLGNLSSLRFLSLQNCLVQG 219
           G   ++++  V+ LT L+ LN+G     +  I     L NLS L  L L N  +  
Sbjct: 251 GTNQISDINAVKDLTKLKMLNVG-----SNQISDISVLNNLSQLNSLFLNNNQLGN 301

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 13/98 (13%)

Query: 117 PPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLV 176
              + +L++L  LN+  +  +    S +  LS L SL L+ N       +LG   +  + 
Sbjct: 258 INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNN-------QLGNEDMEVI- 307

Query: 177 QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
             LTNL TL L +  I +      L +LS +      N
Sbjct: 308 GGLTNLTTLFLSQNHITDIR---PLASLSKMDSADFAN 342

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 10/111 (9%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163
            L  +      I  +   +L  L +L+LSD+  +    S    LS+L  L+L GN Y   
Sbjct: 56  ILKSSRIN--TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-- 111

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
                   +T+L   LTNL+TL +G V  F+     +   L+SL  L ++ 
Sbjct: 112 -----TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 15/131 (11%)

Query: 90  STLAAAFSILSILSG-NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQI---PSEI 144
             L+  +S+L  +    +  +      +P     +L  L +L+LS++    +     +  
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVF--LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 145 LELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNL 204
               +L +L LS N        + KT    ++  L NL +L++ R      P+P +    
Sbjct: 358 GAWPSLQTLVLSQNHLR----SMQKTG--EILLTLKNLTSLDISRNTF--HPMPDSCQWP 409

Query: 205 SSLRFLSLQNC 215
             +RFL+L + 
Sbjct: 410 EKMRFLNLSST 420

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 14/120 (11%)

Query: 105 NLAGNDFRY-PEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG---- 159
            L+ N  R   +    +  L  L+ L++S + F   +P        +  L+LS  G    
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV 425

Query: 160 -----YSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
                 +   L++   +L +    L  L+ L + R  +    +P        L  + +  
Sbjct: 426 KTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL--KTLPDA-SLFPVLLVMKISR 482

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 105 NLAGNDFRYPEIPPE-IANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSG 162
           +L+ N      I    +   + L  L L  S     I  +    L +L  LDLS N    
Sbjct: 32  DLSFNKIT--YIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDN---- 84

Query: 163 GFLELGKTSLTNL----VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
                    L++L       L++L+ LNL         +     NL++L+ L + N 
Sbjct: 85  --------HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 12/96 (12%)

Query: 122 NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLV-QKLT 180
               +  L++   +    + +    L  +  + +  +             +     Q L 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV---------FLVPCSFSQHLK 334

Query: 181 NLETLNLGRVLIFNTPIPHN--LGNLSSLRFLSLQN 214
           +LE L+L   L+    + ++   G   SL+ L L  
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 19/118 (16%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG-- 162
           +++ N      +P   + L +L   N   +     +P+     S L  L +SGN  +   
Sbjct: 187 SVSDNQLA--SLPTLPSELYKLWAYNNRLT----SLPALP---SGLKELIVSGNRLTSLP 237

Query: 163 ------GFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
                   L +    LT+L    + L +L++ R  +  T +P +L +LSS   ++L+ 
Sbjct: 238 VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQL--TRLPESLIHLSSETTVNLEG 293

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 20/129 (15%)

Query: 89  PSTLAAAFSILSI-LSGNLAGNDFRYPEIPPEI--ANLSRLSYLNLSDSFFTGQIPSEIL 145
           P   A   ++ S       A        +  ++     +  + LN+ +S  T  +P  + 
Sbjct: 2   PVDPAEYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP 60

Query: 146 ELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLS 205
             +++ +L +  N            +LT+L      L TL +    +  T +P     L 
Sbjct: 61  --AHITTLVIPDN------------NLTSLPALPPELRTLEVSGNQL--TSLPVLPPGLL 104

Query: 206 SLRFLSLQN 214
            L   S   
Sbjct: 105 ELSIFSNPL 113

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 9e-07
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 23/109 (21%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
            ++GN      +P     L  LS  +   +     +P+     S L  L + GN      
Sbjct: 87  EVSGNQLT--SLPVLPPGLLELSIFSNPLT----HLPA---LPSGLCKLWIFGN------ 131

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQ 213
                  LT+L      L+ L++    +    +P     L  L   + Q
Sbjct: 132 ------QLTSLPVLPPGLQELSVSDNQL--ASLPALPSELCKLWAYNNQ 172

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 23/109 (21%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           +++ N      +P   + L +L      ++  T  +P      S L  L +S N      
Sbjct: 147 SVSDNQLA--SLPALPSELCKL---WAYNNQLT-SLPMLP---SGLQELSVSDN------ 191

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQ 213
            +L   SL  L  +L  L   N        T +P     L  L     +
Sbjct: 192 -QL--ASLPTLPSELYKLWAYNNR-----LTSLPALPSGLKELIVSGNR 232

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           +L  N+          A+   L +LNL  +F    +  +++  + L +LDLS N      
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSN------ 201

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
            +L    +    Q    +  ++L    +    I   L    +L    L+ 
Sbjct: 202 -KL--AFMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 21/123 (17%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGN------ 158
           NL+ N         ++ +LS L  L+L++++       E+L   ++ +L  + N      
Sbjct: 64  NLSSNVLYET---LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVS 115

Query: 159 ---GYSGGFLELGKTSLTNL----VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLS 211
              G     + L    +T L        + ++ L+L    I          +  +L  L+
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 212 LQN 214
           LQ 
Sbjct: 176 LQY 178

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 11/99 (11%)

Query: 116 IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL 175
           I     N +R     ++DS     + S      N+  LDLSGN  S    ++    L   
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS----QISAADLAP- 56

Query: 176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
               T LE LNL   +++ T    +L +LS+LR L L N
Sbjct: 57  ---FTKLELLNLSSNVLYETL---DLESLSTLRTLDLNN 89

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 14/113 (12%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           +L+ N      + PE  + + +++++L ++     I   +    NL   DL GN      
Sbjct: 197 DLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN------ 247

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217
                 +L +   K   ++T+           +        ++  L       
Sbjct: 248 -GFHCGTLRDFFSKNQRVQTVAKQT----VKKLTGQNEEECTVPTLGHYGAYC 295

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 31/130 (23%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           + A N+     +            + L+++  T     +    S +  LDL  N      
Sbjct: 105 HAANNNIS--RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN------ 154

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFN--------------------TPIPHNLGNL 204
            E+   +   L      LE LNL    I++                      +     + 
Sbjct: 155 -EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSA 213

Query: 205 SSLRFLSLQN 214
           + + ++SL+N
Sbjct: 214 AGVTWISLRN 223

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 14/119 (11%)

Query: 105 NLAGNDFRYPEIPPE-IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGN----- 158
           +L+GN     +I    +A  ++L  LNLS +        ++  LS L +LDL+ N     
Sbjct: 40  DLSGNPLS--QISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQEL 95

Query: 159 --GYSGGFLELGKTSLTNL-VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
             G S   L     +++ +   +    + + L    I       + G  S +++L L+ 
Sbjct: 96  LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKL 153

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           +L  N+          A+   L +LNL  +F    +  +++  + L +LDLS N      
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSN------ 201

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
            +L    +    Q    +  ++L    +    I   L    +L    L+ 
Sbjct: 202 -KL--AFMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 19/130 (14%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           +L+ N      + PE  + + +++++L ++     I   +    NL   DL GNG+  G 
Sbjct: 197 DLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 165 LELGKTSLTNLV---------------QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRF 209
           L    +    +                ++ T     + G     + P P     L +L+ 
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF-ADRLIALKR 312

Query: 210 LSLQNCLVQG 219
                   QG
Sbjct: 313 KEHALLSGQG 322

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 120 IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL 179
             N +R     ++DS     + S      N+  LDLSGN       ++    L       
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN----PLSQISAADLAP----F 57

Query: 180 TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
           T LE LNL   +++ T    +L +LS+LR L L N
Sbjct: 58  TKLELLNLSSNVLYETL---DLESLSTLRTLDLNN 89

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 21/123 (17%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG-- 162
           NL+ N         ++ +LS L  L+L++++       E+L   ++ +L  + N  S   
Sbjct: 64  NLSSNVLYET---LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVS 115

Query: 163 -------GFLELGKTSLTNL----VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLS 211
                    + L    +T L        + ++ L+L    I          +  +L  L+
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 212 LQN 214
           LQ 
Sbjct: 176 LQY 178

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 31/130 (23%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           + A N+     +            + L+++  T     +    S +  LDL  N      
Sbjct: 105 HAANNNIS--RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN------ 154

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTP--------------------IPHNLGNL 204
            E+   +   L      LE LNL    I++                      +     + 
Sbjct: 155 -EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSA 213

Query: 205 SSLRFLSLQN 214
           + + ++SL+N
Sbjct: 214 AGVTWISLRN 223

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 14/119 (11%)

Query: 105 NLAGNDFRYPEIPPE-IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGN----- 158
           +L+GN     +I    +A  ++L  LNLS +        ++  LS L +LDL+ N     
Sbjct: 40  DLSGNPLS--QISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQEL 95

Query: 159 --GYSGGFLELGKTSLTNL-VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
             G S   L     +++ +   +    + + L    I       + G  S +++L L+ 
Sbjct: 96  LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKL 153

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 18/123 (14%)

Query: 93  AAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILE-LSNLV 151
                 L+IL   L  N+         + N   L  ++LS +    +I       +  L 
Sbjct: 228 GPVNVELTIL--KLQHNNLTDT---AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLE 281

Query: 152 SLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLS 211
            L +S N        L   +L    Q +  L+ L+L    +    +  N      L  L 
Sbjct: 282 RLYISNN-------RL--VALNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLY 330

Query: 212 LQN 214
           L +
Sbjct: 331 LDH 333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 21/124 (16%)

Query: 86  SKVPSTLAAAFSILSILSGNLAGNDF-RYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEI 144
           S   +   +A+         L G +      +  E   +++ S L L+    +  +P  +
Sbjct: 23  SGTYADYFSAWDKWEKQ--ALPGENRNEAVSLLKEC-LINQFSELQLNRLNLS-SLPDNL 78

Query: 145 LELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNL 204
                +  L+++ N            +L +L +   +LE L+     +  + +P    +L
Sbjct: 79  P--PQITVLEITQN------------ALISLPELPASLEYLDACDNRL--STLPELPASL 122

Query: 205 SSLR 208
             L 
Sbjct: 123 KHLD 126

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 23/104 (22%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
            +  N      +P   A+L    YL+  D+  +  +P      ++L  LD+  N      
Sbjct: 86  EITQNALI--SLPELPASLE---YLDACDNRLS-TLPELP---ASLKHLDVDNN------ 130

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLR 208
                  LT L +    LE +N     +  T +P    +L  L 
Sbjct: 131 ------QLTMLPELPALLEYINADNNQL--TMLPELPTSLEVLS 166

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 22/123 (17%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG-- 162
           ++  N      +P   A L    Y+N  ++  T  +P      ++L  L +  N  +   
Sbjct: 126 DVDNNQLT--MLPELPALLE---YINADNNQLT-MLPELP---TSLEVLSVRNNQLTFLP 176

Query: 163 ------GFLELGKTSLTNL---VQKLTNLETLNLGRVLIFN--TPIPHNLGNLSSLRFLS 211
                   L++    L +L     +  + E   +      N  T IP N+ +L     + 
Sbjct: 177 ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTII 236

Query: 212 LQN 214
           L++
Sbjct: 237 LED 239

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 118 PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQ 177
             + NL++L  + ++++       + +  L+NL  L L  N           T +  L +
Sbjct: 84  TPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI---------TDIDPL-K 131

Query: 178 KLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCL 216
            LTNL  L L    I +      L  L+SL+ LS  N +
Sbjct: 132 NLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFGNQV 167

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 17/114 (14%)

Query: 118 PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG----------GFLEL 167
             +  L+ L  L+L+ +         +  L+NL  LDL+ N  S             L+L
Sbjct: 215 TPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272

Query: 168 GKTSLTNL--VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219
           G   ++N+  +  LT L  L L    + +      + NL +L +L+L    +  
Sbjct: 273 GANQISNISPLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISD 323

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 16/99 (16%)

Query: 117 PPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLV 176
              ++ L+ L  L+  +          +  L+ L  LD+S N           + ++ L 
Sbjct: 149 ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKV---------SDISVL- 195

Query: 177 QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
            KLTNLE+L      I +      LG L++L  LSL   
Sbjct: 196 AKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGN 231

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 17/111 (15%)

Query: 117 PPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG----------GFLE 166
                +L +++ L              +  L+NL  ++ S N  +             + 
Sbjct: 39  TVSQTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL 96

Query: 167 LGKTSLTNL--VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
           +    + ++  +  LTNL  L L    I +      L NL++L  L L + 
Sbjct: 97  MNNNQIADITPLANLTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSN 144

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 19/100 (19%)

Query: 118 PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL-- 175
             I+NL  L+YL L  +  +   P  +  L+ L  L    N             ++++  
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK------------VSDVSS 348

Query: 176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
           +  LTN+  L+ G   I +      L NL+ +  L L + 
Sbjct: 349 LANLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQ 385

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 36/141 (25%), Positives = 46/141 (32%), Gaps = 22/141 (15%)

Query: 93  AAAFSILSILSG-NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSN 149
           AA+F     L+   L  N      I       L+ L  L+LSD+     +       L  
Sbjct: 49  AASFRACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106

Query: 150 LVSLDLSGNGYS----GGF--------LELGKTSLTNL----VQKLTNLETLNLGRVLIF 193
           L +L L   G      G F        L L   +L  L     + L NL  L L    I 
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 194 NTPIPHNLGNLSSLRFLSLQN 214
           + P       L SL  L L  
Sbjct: 167 SVP-ERAFRGLHSLDRLLLHQ 186

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 29/144 (20%)

Query: 93  AAAFSILSILSG-NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSN 149
            A F  L  L   +L     +  E+ P +   L+ L YL L D+     +P +    L N
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGN 154

Query: 150 LVSLDLSGNGYS----GGFLELGKTSLTNLV--------------QKLTNLETLNLGRVL 191
           L  L L GN  S      F  L   SL  L+              + L  L TL L    
Sbjct: 155 LTHLFLHGNRISSVPERAFRGL--HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 192 IFNTPIPHN-LGNLSSLRFLSLQN 214
           +  + +P   L  L +L++L L +
Sbjct: 213 L--SALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 17/118 (14%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSG 162
            L GN      +P         L+ L L  +    +I +     L+ L  LDLS N    
Sbjct: 38  FLHGNRIS--HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQL- 93

Query: 163 GFLELGKTSLTNLV-QKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRFLSLQNCLVQ 218
                   S+       L  L TL+L R  +    +       L++L++L LQ+  +Q
Sbjct: 94  -------RSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQ 142

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 21/109 (19%)

Query: 120 IANLSRLSYLNLSDSFFTGQIP--SEILELSNLVSLDLSGNGYS--GGF--------LEL 167
           I  L  ++ L L+ +    ++     +  L NL  L L  N                L L
Sbjct: 61  IQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116

Query: 168 GKTSLTNL--VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
               ++++  +  L  LE+L LG   I +      L  L+ L  LSL++
Sbjct: 117 EHNGISDINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLED 162

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 16/101 (15%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174
           +I P     +     NL     T  +     EL+++  +  + +            S+  
Sbjct: 13  QIFP-DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI---------KSVQG 60

Query: 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
           + Q L N+  L L    + +      L NL +L +L L   
Sbjct: 61  I-QYLPNVTKLFLNGNKLTDIK---PLTNLKNLGWLFLDEN 97

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 15/95 (15%)

Query: 120 IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL 179
           + +L +L  L+L  +  +  I   ++ L  L SL L  N           T +T L  +L
Sbjct: 105 LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKI---------TDITVL-SRL 152

Query: 180 TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
           T L+TL+L    I +      L  L+ L+ L L  
Sbjct: 153 TKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSK 184

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 16/113 (14%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSG 162
            L  N  +   IP  +   LS L+ L++S++     +   + + L NL SL++  N    
Sbjct: 86  GLRSNRLK--LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDN---- 138

Query: 163 GFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRFLSLQN 214
             + +   + +     L +LE L L +  +  T IP   L +L  L  L L++
Sbjct: 139 DLVYISHRAFSG----LNSLEQLTLEKCNL--TSIPTEALSHLHGLIVLRLRH 185

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 22/116 (18%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163
            L   +     I       L RL  L +S   +   +    L   NL SL ++       
Sbjct: 182 RLRHLNIN--AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC----- 234

Query: 164 FLELGKTSLTNL----VQKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRFLSLQN 214
                  +LT +    V+ L  L  LNL    I  + I  + L  L  L+ + L  
Sbjct: 235 -------NLTAVPYLAVRHLVYLRFLNLSYNPI--STIEGSMLHELLRLQEIQLVG 281

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 33/130 (25%), Positives = 46/130 (35%), Gaps = 23/130 (17%)

Query: 93  AAAFSILSILSG-NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSN 149
              F+    L    L  N      + P    NL  L  L L  +     IP  +   LSN
Sbjct: 49  QDEFASFPHLEELELNENIVS--AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSN 105

Query: 150 LVSLDLSGNGYSGGFLELGKTSLTNL----VQKLTNLETLNLGRVLIFNTPIPHNLGNLS 205
           L  LD+S N             +  L     Q L NL++L +G   +           L+
Sbjct: 106 LTKLDISEN------------KIVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLN 152

Query: 206 SLRFLSLQNC 215
           SL  L+L+ C
Sbjct: 153 SLEQLTLEKC 162

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 16/125 (12%)

Query: 93  AAAFSILSILSGNLAGNDFRYPEIPPE-IANLSRLSYLNLSDSFFTGQIPSEILE-LSNL 150
                 L++ S ++   +     +P   + +L  L +LNLS +  +  I   +L  L  L
Sbjct: 218 PNCLYGLNLTSLSITHCNLT--AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRL 274

Query: 151 VSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNL-GNLSSLRF 209
             + L G   +     +   +       L  L  LN+    +  T +  ++  ++ +L  
Sbjct: 275 QEIQLVGGQLA----VVEPYAFRG----LNYLRVLNVSGNQL--TTLEESVFHSVGNLET 324

Query: 210 LSLQN 214
           L L +
Sbjct: 325 LILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 14/113 (12%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSG 162
            +  ND     I     + L+ L  L L     T  IP+E L  L  L+ L L       
Sbjct: 134 EVGDNDLV--YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN--- 187

Query: 163 GFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
               +   S   L      L+ L +      +T +  N     +L  LS+ +C
Sbjct: 188 -INAIRDYSFKRL----YRLKVLEISHWPYLDT-MTPNCLYGLNLTSLSITHC 234

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 19/119 (15%)

Query: 105 NLAGNDFRYPEIPPEIA--NLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYS 161
           +L+ N+     +  E     L+ L  L LS +     I SE    + NL  LDLS N   
Sbjct: 45  DLSHNNLS--RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN--- 98

Query: 162 GGFLELGKTSLTNLV-QKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRFLSLQNCLVQ 218
                L   +L   +   L  LE L L    I    +  N   +++ L+ L L    + 
Sbjct: 99  ----HL--HTLDEFLFSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQKLYLSQNQIS 149

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 21/117 (17%)

Query: 105 NLAGNDFRYPEIPPE-IANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSG 162
           +L+ N     E+     + L  L +L +        I +     LS+L+ L L  N    
Sbjct: 36  DLSLNSIA--ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN---- 89

Query: 163 GFLELGKTSLTNL----VQKLTNLETLNLGRVLIFNTPIPHNL-GNLSSLRFLSLQN 214
                       L       L NLE L L +  +    +  N    L+SL  L L++
Sbjct: 90  --------QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 8/125 (6%)

Query: 93  AAAFSILSILSG-NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNL 150
           AA+   L+ L+   L+ N      +     AN   L  L+L+++    ++P  + +   +
Sbjct: 209 AASLKGLNNLAKLGLSFNSIS--AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265

Query: 151 VSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNL-GNLSSLRF 209
             + L  N  S   +            K  +   ++L    +    I  +    +     
Sbjct: 266 QVVYLHNNNIS--AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 210 LSLQN 214
           + L N
Sbjct: 324 VQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 26/129 (20%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG---- 159
            L  N  +   I       + +LSY+ ++D+  T  IP  +    +L  L L GN     
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKV 207

Query: 160 YSGGFLELGKTSLTNLV--------------QKLTNLETLNLGRVLIFNTPIPHNLGNLS 205
            +     L   +L  L                   +L  L+L    +    +P  L +  
Sbjct: 208 DAASLKGL--NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPGGLADHK 263

Query: 206 SLRFLSLQN 214
            ++ + L N
Sbjct: 264 YIQVVYLHN 272

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 16/126 (12%)

Query: 93  AAAFSILSILSG-NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNL 150
              F  L  L    L  N     +I P   A L +L  L LS +    ++P ++     L
Sbjct: 69  DGDFKNLKNLHTLILINNKIS--KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTL 123

Query: 151 VSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRF 209
             L +  N  +    ++ K+    L      +  + LG   + ++ I +     +  L +
Sbjct: 124 QELRVHENEIT----KVRKSVFNGL----NQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 210 LSLQNC 215
           + + + 
Sbjct: 176 IRIADT 181

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 39/144 (27%), Positives = 50/144 (34%), Gaps = 30/144 (20%)

Query: 93  AAAFSILSILSG-NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSN 149
             +F  L  L    L+ N  R   I       L+ L+ L L D+  T  IP+     LS 
Sbjct: 81  VNSFKHLRHLEILQLSRNHIR--TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSK 137

Query: 150 LVSLDLSGNG----YSGGFLELGKTSLTNLV---------------QKLTNLETLNLGRV 190
           L  L L  N      S  F  +   SL  L                + L+NL  LNL   
Sbjct: 138 LKELWLRNNPIESIPSYAFNRI--PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 191 LIFNTPIPHNLGNLSSLRFLSLQN 214
            +    IP+ L  L  L  L L  
Sbjct: 196 NL--REIPN-LTPLIKLDELDLSG 216

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 19/115 (16%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSG 162
            L  N      IP      +  L  L+L +      I     E LSNL  L+L+      
Sbjct: 142 WLRNNPIE--SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC---- 195

Query: 163 GFLELGKTSLTNL--VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
                   +L  +  +  L  L+ L+L    +     P +   L  L+ L +   
Sbjct: 196 --------NLREIPNLTPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQS 241

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 115 EIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT 173
            I       LS L YLNL+      +IP+ +  L  L  LDLSGN        +   S  
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGN----HLSAIRPGSFQ 228

Query: 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
                L +L+ L + +  I      +   NL SL  ++L +
Sbjct: 229 G----LMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAH 264

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 86  SKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEIL 145
           S +   LA  FS   +   +L+ +      +   ++  S+L  L+L     +  I + + 
Sbjct: 80  SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139

Query: 146 ELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGR-VLIFNTPIPHNLG-N 203
           + SNLV L+LSG           + +L  L+   + L+ LNL          +   +   
Sbjct: 140 KNSNLVRLNLSGC------SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193

Query: 204 LSSLRFLSLQNC 215
             ++  L+L   
Sbjct: 194 SETITQLNLSGY 205

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 16/123 (13%)

Query: 93  AAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILE-LSNLV 151
             AF  L +    ++        IP ++     L+ L+L  +     I  E L   S L 
Sbjct: 166 PGAFDGLKLNYLRISEAKLT--GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLY 220

Query: 152 SLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLS 211
            L L  N        +   SL+ L      L  L+L    +  + +P  L +L  L+ + 
Sbjct: 221 RLGLGHNQIR----MIENGSLSFL----PTLRELHLDNNKL--SRVPAGLPDLKLLQVVY 270

Query: 212 LQN 214
           L  
Sbjct: 271 LHT 273

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 14/112 (12%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163
            L  N     +I  +  + L +L  L +S +    +IP  +   S+LV L +  N     
Sbjct: 84  VLVNNKIS--KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-- 136

Query: 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
             ++ K   + L     N+  + +G   + N+       +   L +L +   
Sbjct: 137 --KVPKGVFSGL----RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 5/102 (4%)

Query: 115 EIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT 173
            I     + L  L  L+L ++  + ++P+ + +L  L  + L  N  +   + +      
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT--KVGVNDFCPV 287

Query: 174 NLVQKLTNLETLNLGRVLIFNTPIPHNL-GNLSSLRFLSLQN 214
               K      ++L    +    +       ++    +   N
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 17/109 (15%)

Query: 118 PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG----------GFLEL 167
             + NL++++ L LS +       S I  L ++ +LDL+    +             L L
Sbjct: 79  APLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 168 GKTSLTNL--VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
               +TN+  +  LTNL+ L++G   + +      L NLS L  L   +
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKADD 182

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 41/144 (28%), Positives = 52/144 (36%), Gaps = 30/144 (20%)

Query: 93  AAAFSILSILSG-NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSN 149
           A  F  L  L    L  N  R  +I       L+ L+ L L D++ T  IPS   E LS 
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIR--QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSK 148

Query: 150 LVSLDLSGNGYS----GGFLELGKTSLTNLV---------------QKLTNLETLNLGRV 190
           L  L L  N         F  +   SL  L                + L NL+ LNLG  
Sbjct: 149 LRELWLRNNPIESIPSYAFNRV--PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 191 LIFNTPIPHNLGNLSSLRFLSLQN 214
            I    +P+ L  L  L  L +  
Sbjct: 207 NI--KDMPN-LTPLVGLEELEMSG 227

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 25/116 (21%), Positives = 37/116 (31%), Gaps = 21/116 (18%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSG 162
            L  N      IP      +  L  L+L +      I     E L NL  L+L       
Sbjct: 153 WLRNNPIE--SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC---- 206

Query: 163 GFLELGKTSLTNL--VQKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRFLSLQNC 215
                   ++ ++  +  L  LE L +         I       LSSL+ L + N 
Sbjct: 207 --------NIKDMPNLTPLVGLEELEMSGNHF--PEIRPGSFHGLSSLKKLWVMNS 252

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 31/134 (23%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNG--- 159
           NL  N+ +   I  +   +L  L  L L  +    QI       L++L +L+L  N    
Sbjct: 81  NLMENNIQ--MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTV 137

Query: 160 -YSGGFLELGKTSLTNLV--------------QKLTNLETLNLGRVLIFN--TPIPHN-L 201
             SG F  L  + L  L                ++ +L  L+LG          I     
Sbjct: 138 IPSGAFEYL--SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE---LKKLEYISEGAF 192

Query: 202 GNLSSLRFLSLQNC 215
             L +L++L+L  C
Sbjct: 193 EGLFNLKYLNLGMC 206

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 14/102 (13%)

Query: 115 EIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT 173
            I       L  L YLNL        +P+ +  L  L  L++SGN +     E+   S  
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP----EIRPGSFH 239

Query: 174 NLVQKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRFLSLQN 214
                L++L+ L +    +  + I  N    L+SL  L+L +
Sbjct: 240 G----LSSLKKLWVMNSQV--SLIERNAFDGLASLVELNLAH 275

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 9/103 (8%)

Query: 117 PPEIANLSRLSYLNLSDSFFTGQIPSEI----LELSNLVSLDLSGNGYSGGFLELGKTSL 172
             ++     LS L+LSD+   G+         L+   L  L L   G     +E      
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-----METPSGVC 220

Query: 173 TNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
           + L      L+ L+L    + +     +    S L  L+L   
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 122 NLSRLSYLNLSDSFFTGQIPSEILEL--SNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL 179
            +S L  L L +   TG  P  +LE    +L  L+L    ++     L +          
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ----WLK 148

Query: 180 TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
             L+ L++ +    N      +    +L  L L +
Sbjct: 149 PGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSD 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 32/140 (22%), Positives = 44/140 (31%), Gaps = 27/140 (19%)

Query: 95  AFSILSILSG-NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVS 152
               L +L   +L+ N  +   +P     L  L+ L++S +  T  +P   L  L  L  
Sbjct: 72  VDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE 128

Query: 153 LDLSGNGYS----GGFLELGKTSLTNLV--------------QKLTNLETLNLGRVLIFN 194
           L L GN       G         L  L                 L NL+TL L    +  
Sbjct: 129 LYLKGNELKTLPPGLLTPT--PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-- 184

Query: 195 TPIPHNLGNLSSLRFLSLQN 214
             IP        L F  L  
Sbjct: 185 YTIPKGFFGSHLLPFAFLHG 204

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 14/113 (12%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS-EILE-LSNLVSLDLSGNGYSG 162
            L  +     ++         L +L+  +      + S   L  L+ L  L+LS N  SG
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINV----GLTSIANLPKLNKLKKLELSDNRVSG 78

Query: 163 GFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
           G        L  L +K  NL  LNL    I +      L  L +L+ L L NC
Sbjct: 79  G--------LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 13/103 (12%)

Query: 116 IPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSGGFLELGKTSLT 173
           I      +LS LS L L+ +     +       LS+L  L                 SL 
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL---------ASLE 116

Query: 174 NLV-QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
           N     L  L+ LN+   LI +  +P    NL++L  L L + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 32/113 (28%), Positives = 42/113 (37%), Gaps = 14/113 (12%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS-EILE-LSNLVSLDLSGNGYSG 162
            L        +I    A    L +L+L +      + S   L  L  L  L+LS N   G
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINV----GLISVSNLPKLPKLKKLELSENRIFG 85

Query: 163 GFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
           G        L  L +KL NL  LNL    + +      L  L  L+ L L NC
Sbjct: 86  G--------LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 6/97 (6%)

Query: 120 IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL 179
               + L             +P + + L     L   G         +G   +  L    
Sbjct: 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG------LSYMGPNEMPILFPFA 292

Query: 180 TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCL 216
             +  L+L   L+        +    +L  L  +N +
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI 329

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 11/102 (10%)

Query: 122 NLSRLSYLNLSD-SFFTGQIPSEILE-----LSNLVSLDLSGNGYSGGFLELGKTSLTNL 175
           NL     + L      T       +         L                L    L+ +
Sbjct: 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG-----GLTDLGLSYI 458

Query: 176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217
            Q   N+  + LG V   +  +        +L+ L ++ C  
Sbjct: 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 20/118 (16%), Positives = 30/118 (25%), Gaps = 7/118 (5%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSG----NGY 160
           +L        +    I     L  L   +      +         L  L +       G 
Sbjct: 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGM 358

Query: 161 SGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN---TPIPHNLGNLSSLRFLSLQNC 215
                 + +  L  L Q    LE + +    I N     I   L NL   R + L   
Sbjct: 359 EDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 15/96 (15%)

Query: 120 IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL 179
              L+     NL     T        ELS + + +   +            SL  + Q  
Sbjct: 15  DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNI---------QSLAGM-QFF 62

Query: 180 TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
           TNL+ L+L    I +      L +L+ L  LS+   
Sbjct: 63  TNLKELHLSHNQISDLS---PLKDLTKLEELSVNRN 95

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 117 PPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL- 175
             +I +LS+L  L +S +       S       L  LDLS N             L  + 
Sbjct: 38  TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN------------KLVKIS 85

Query: 176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
                NL+ L+L        PI    GN+S L+FL L   
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 19/97 (19%)

Query: 120 IANLSRLSYLNLSDSFFTGQIP--SEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQ 177
           +ANL  L +L L ++    ++   S + +L  L SL L  NG          + +  L  
Sbjct: 86  LANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGI---------SDINGL-V 131

Query: 178 KLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
            L  LE+L LG   I +      L  L+ L  LSL++
Sbjct: 132 HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLED 165

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 15/96 (15%)

Query: 120 IANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL 179
               +     NL     T  +     EL+++  +  + +            S+  + Q L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI---------KSVQGI-QYL 67

Query: 180 TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
            N+  L L    + +      L NL +L +L L   
Sbjct: 68  PNVTKLFLNGNKLTDIK---PLANLKNLGWLFLDEN 100

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 7/113 (6%)

Query: 105 NLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSG 162
            +  +D +     P+   ++  +S+L L        +    ++  S++  L+L       
Sbjct: 180 EIDASDLQ--SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT 236

Query: 163 GFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
                  T  TN + K      + +    +F   +   L  +S L  L     
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRN 287

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 32/183 (17%), Positives = 54/183 (29%), Gaps = 49/183 (26%)

Query: 39  HDDERS----ALLQFKEGLIINVPIEESHH-NYPWSYECRPKVASWKQGEAASKVPSTLA 93
                +      L  K+  ++   +EE    NY +           K      + PS + 
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS------PIK---TEQRQPSMMT 109

Query: 94  AAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSL 153
             +    I   +   ND           N+SRL            ++   +LEL    ++
Sbjct: 110 RMY----IEQRDRLYND--NQVFAKY--NVSRLQPYL--------KLRQALLELRPAKNV 153

Query: 154 DLSGNGYSGGFLELGKTSLTNLVQKLTNLET--------LNLGRVLIFNTP--IPHNLGN 203
            + G     G    GKT +   V     ++         LNL      N+P  +   L  
Sbjct: 154 LIDG---VLGS---GKTWVALDVCLSYKVQCKMDFKIFWLNLKNC---NSPETVLEMLQK 204

Query: 204 LSS 206
           L  
Sbjct: 205 LLY 207

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 11/99 (11%)

Query: 117 PPEIANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSGGFLELGKTSLTNL 175
             E   L+    +   +S    ++P+ +L+    +  L+L+         E+   +    
Sbjct: 38  GFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE----EIDTYAFAY- 91

Query: 176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
                 ++ L +G   I   P PH   N+  L  L L+ 
Sbjct: 92  ---AHTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLER 126

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 23/125 (18%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYS--- 161
           + + N      +   +     L+ L L  +  T      +L    LV +DLS N      
Sbjct: 211 DASHNSIN--VVRGPV--NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIM 264

Query: 162 -GGFLELGK-----------TSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRF 209
              F+++ +            +L    Q +  L+ L+L    +    +  N      L  
Sbjct: 265 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLEN 322

Query: 210 LSLQN 214
           L L +
Sbjct: 323 LYLDH 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 39.2 bits (90), Expect = 6e-04
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 122 NLSRLSYLNLSDSFFTGQIPSEILE---LSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK 178
               L +L + D+     +    LE   L  L ++D+S    +      G   L + V K
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE----GARLLLDHVDK 305

Query: 179 LTNLETLNL 187
           + +L+ +N+
Sbjct: 306 IKHLKFINM 314

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 15/113 (13%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSGG 163
            L  N+F   E       L +L  +N S++  T  I     E  S +  + L+ N     
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN----- 91

Query: 164 FLELGKTSLTNLV-QKLTNLETLNLGRVLIFNTPIPHNL-GNLSSLRFLSLQN 214
              L   ++ + + + L +L+TL L    I  T + ++    LSS+R LSL +
Sbjct: 92  --RL--ENVQHKMFKGLESLKTLMLRSNRI--TCVGNDSFIGLSSVRLLSLYD 138

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 38.7 bits (90), Expect = 9e-04
 Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 122 NLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLT 180
           +   L  L+LS    T ++   I      +  L ++  G            + +++    
Sbjct: 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-------DSDLGMHHVLSGCD 481

Query: 181 NLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
           +L  L +      +  +  N   L ++R L + +C
Sbjct: 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.81
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.68
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.68
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.67
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.65
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.63
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.62
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.6
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.6
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.59
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.59
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.59
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.59
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.58
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.58
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.57
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.57
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.57
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.56
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.55
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.54
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.54
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.54
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.53
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.53
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.53
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.53
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.52
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.52
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.52
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.52
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.51
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.51
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.51
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.5
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.5
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.5
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.5
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.49
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.49
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.48
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.47
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.47
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.46
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.45
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.44
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.44
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.44
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.44
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.43
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.43
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.43
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.43
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.42
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.42
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.41
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.41
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.41
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.41
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.4
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.4
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.36
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.36
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.35
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.34
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.31
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.29
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.26
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.25
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.2
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.99
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.97
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.89
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.83
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.77
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.52
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.43
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.27
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.25
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.24
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.2
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.11
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.02
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.75
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.34
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.23
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.14
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.83
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.76
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.68
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.66
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.97
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.93
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.45
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.04
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.48

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.4e-24  Score=180.57  Aligned_cols=165  Identities=26%  Similarity=0.439  Sum_probs=136.2

Q ss_pred             CCCHHHHHHHHHHHhcCccCCCCcccCCCCCCCccCCCCcccccCCCCCC----------------Cccc--cccc-ccc
Q 040237           37 ICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAAS----------------KVPS--TLAA-AFS   97 (219)
Q Consensus        37 ~~~~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~c~----------------~l~g--~lp~-l~~   97 (219)
                      .|.++|++||++||+++.++.      .+.+|..+..++.+.|. |+.|.                .+.|  .+|+ +..
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~------~l~~W~~~~~~C~~~w~-gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~   74 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT------TLSSWLPTTDCCNRTWL-GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN   74 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG------GGTTCCTTSCTTTTCST-TEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGG
T ss_pred             CCCHHHHHHHHHHHHhcCCcc------cccCCCCCCCCCcCCCc-ceEeCCCCCCceEEEEECCCCCccCCcccChhHhC
Confidence            499999999999999996542      35677654322223499 66663                3556  7787 999


Q ss_pred             CCCCCEeecCC-CCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHH
Q 040237           98 ILSILSGNLAG-NDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLV  176 (219)
Q Consensus        98 l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l  176 (219)
                      +++|++|++++ |.+.+. +|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++        .+|..+
T Consensus        75 l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--------~~p~~~  145 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG--------TLPPSI  145 (313)
T ss_dssp             CTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES--------CCCGGG
T ss_pred             CCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC--------cCChHH
Confidence            99999999995 889886 99999999999999999999999999999999999999999999854        567778


Q ss_pred             hcCCCCCEEeccCccCCCCCcChhhcCCC-CCCEeeccccccc
Q 040237          177 QKLTNLETLNLGRVLIFNTPIPHNLGNLS-SLRFLSLQNCLVQ  218 (219)
Q Consensus       177 ~~l~~L~~L~l~~N~l~~~~~p~~l~~l~-~L~~L~ls~N~l~  218 (219)
                      ..+++|++|++++|.+++ .+|..+.+++ +|++|++++|+++
T Consensus       146 ~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          146 SSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             GGCTTCCEEECCSSCCEE-ECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             hcCCCCCeEECcCCcccC-cCCHHHhhhhhcCcEEECcCCeee
Confidence            888888888888888887 7888888887 8888888888775

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=1.2e-20  Score=157.86  Aligned_cols=170  Identities=18%  Similarity=0.288  Sum_probs=122.1

Q ss_pred             CCHHHHHHHHHHHhcCccCCCCcccCCCCCCCc--cCCCCcccccCCCCC----------------------CCcccccc
Q 040237           38 CHDDERSALLQFKEGLIINVPIEESHHNYPWSY--ECRPKVASWKQGEAA----------------------SKVPSTLA   93 (219)
Q Consensus        38 ~~~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~--~~~~~~~~W~~~~~c----------------------~~l~g~lp   93 (219)
                      +..+|++||++||+.+..++.    .+...|..  ++.+..|.|. |+.|                      +.+. .+|
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~----~~~~~w~~~~~~~~~~~~~~-g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp   97 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRN----RWHSAWRQANSNNPQIETRT-GRALKATADLLEDATQPGRVALELRSVPLP-QFP   97 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCT----THHHHHHHHTTTCTTSCCSH-HHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred             cCchHHHHHHHHHHhccCCch----hhhhhhcccccccccccccC-CcchhhhHHHHhcccccceeEEEccCCCch-hcC
Confidence            456899999999998865443    23345641  2345788897 4444                      2333 577


Q ss_pred             c-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC----
Q 040237           94 A-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG----  168 (219)
Q Consensus        94 ~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~----  168 (219)
                      + +..+++|++|++++|.+.  .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..-    
T Consensus        98 ~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~  174 (328)
T 4fcg_A           98 DQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD  174 (328)
T ss_dssp             SCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred             hhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence            7 888999999999999988  38888889999999999999988 888888899999999999888777665311    


Q ss_pred             --------------------CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          169 --------------------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       169 --------------------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                                          ...+|..++++++|++|++++|.+++  +|..+..+++|++|++++|++.
T Consensus       175 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~  242 (328)
T 4fcg_A          175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTAL  242 (328)
T ss_dssp             -CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTC
T ss_pred             chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcch
Confidence                                11456666666777777777776654  5556666666777776666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=6.3e-21  Score=172.67  Aligned_cols=177  Identities=12%  Similarity=0.155  Sum_probs=132.5

Q ss_pred             CCHHHHHHHHHHHhcCccCCCCccc---CCCCCCCccCCCCcccc---cCCCCC-------------CCccccccc-ccc
Q 040237           38 CHDDERSALLQFKEGLIINVPIEES---HHNYPWSYECRPKVASW---KQGEAA-------------SKVPSTLAA-AFS   97 (219)
Q Consensus        38 ~~~~~~~aL~~~k~~l~~~~~~~~~---~~~~~w~~~~~~~~~~W---~~~~~c-------------~~l~g~lp~-l~~   97 (219)
                      ...+|++||.++++++.++.+...+   .....|..+  ..+|.|   . |+.|             +++.|.+|+ +++
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~--~~~c~w~~~~-GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~  103 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN--KELDMWGAQP-GVSLNSNGRVTGLSLEGFGASGRVPDAIGQ  103 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS--SCGGGTTCCT-TEEECTTCCEEEEECTTSCCEEEECGGGGG
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC--CCcccccCCC-CeEEcCCCCEEEEEecCcccCCcCChHHhc
Confidence            3467999999999999877543221   223467754  378999   6 7777             457788888 999


Q ss_pred             CCCCCEeecCCCCC------CC----------------------------------------------------------
Q 040237           98 ILSILSGNLAGNDF------RY----------------------------------------------------------  113 (219)
Q Consensus        98 l~~L~~L~L~~n~l------~~----------------------------------------------------------  113 (219)
                      +++|++|++++|.+      .+                                                          
T Consensus       104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l  183 (636)
T 4eco_A          104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL  183 (636)
T ss_dssp             CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred             CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence            99999999998854      00                                                          


Q ss_pred             ------------CCCchhhcCCCCCCEEEcccCCCCCC-----------------Cchhhh--cCCCCcEEEccCCCCCC
Q 040237          114 ------------PEIPPEIANLSRLSYLNLSDSFFTGQ-----------------IPSEIL--ELSNLVSLDLSGNGYSG  162 (219)
Q Consensus       114 ------------~~~p~~l~~l~~L~~L~Ls~n~l~g~-----------------lp~~~~--~l~~L~~L~Ls~N~l~g  162 (219)
                                  ..+|+.++++++|++|++++|.++|.                 +|..++  ++++|++|++++|.+.|
T Consensus       184 ~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~  263 (636)
T 4eco_A          184 KDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT  263 (636)
T ss_dssp             CTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred             hhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence                        01677788899999999999999875                 888888  89999999999998887


Q ss_pred             CccccC-----------------Cc-cccHHHhcC------CCCCEEeccCccCCCCCcCh--hhcCCCCCCEeeccccc
Q 040237          163 GFLELG-----------------KT-SLTNLVQKL------TNLETLNLGRVLIFNTPIPH--NLGNLSSLRFLSLQNCL  216 (219)
Q Consensus       163 ~~~~~~-----------------~~-~~p~~l~~l------~~L~~L~l~~N~l~~~~~p~--~l~~l~~L~~L~ls~N~  216 (219)
                      .+|..-                 .+ .+|..++++      ++|++|++++|.++.  +|.  .++++++|++|++++|+
T Consensus       264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~--ip~~~~l~~l~~L~~L~L~~N~  341 (636)
T 4eco_A          264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--FPVETSLQKMKKLGMLECLYNQ  341 (636)
T ss_dssp             SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS--CCCHHHHTTCTTCCEEECCSCC
T ss_pred             cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc--cCchhhhccCCCCCEEeCcCCc
Confidence            666310                 12 466767665      788888888888764  777  78888888888888888


Q ss_pred             ccC
Q 040237          217 VQG  219 (219)
Q Consensus       217 l~G  219 (219)
                      ++|
T Consensus       342 l~g  344 (636)
T 4eco_A          342 LEG  344 (636)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=7.7e-21  Score=177.09  Aligned_cols=176  Identities=15%  Similarity=0.112  Sum_probs=121.7

Q ss_pred             CCCCCHHHHHHHHHHHhcCccCCCCcccCCCCCCCccCCCCcccc------------cCCCCC-------------CCcc
Q 040237           35 LPICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASW------------KQGEAA-------------SKVP   89 (219)
Q Consensus        35 ~~~~~~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~~~~~~~~~W------------~~~~~c-------------~~l~   89 (219)
                      .+.+..+|++||++||+++.++.|     ...+|..+..++.|+|            . |+.|             +++.
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~~W-----~~~~~~~~~~~~~C~W~~~~~~~~w~~~~-GV~C~~~~~V~~L~Ls~~~L~  336 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGKNW-----RYYSGTINNTIHSLNWNFNKELDMWGDQP-GVDLDNNGRVTGLSLAGFGAK  336 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGGGC-----CCCCSSCSSCCCCCSCCCSSCGGGTTCCT-TEEECTTSCEEEEECTTTCCE
T ss_pred             ccccchHHHHHHHHHHHHcCCCCC-----CcCCCcccccCCccccccccccccccCcC-ceEecCCCCEEEEECccCCCC
Confidence            334567899999999999976521     1111111233345788            5 6666             4577


Q ss_pred             ccccc-cccCCCCCEeec-CCCCCCCC-----------------------------------------------------
Q 040237           90 STLAA-AFSILSILSGNL-AGNDFRYP-----------------------------------------------------  114 (219)
Q Consensus        90 g~lp~-l~~l~~L~~L~L-~~n~l~~~-----------------------------------------------------  114 (219)
                      |.+|+ ++++++|++|+| ++|.+.|.                                                     
T Consensus       337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~  416 (876)
T 4ecn_A          337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP  416 (876)
T ss_dssp             EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred             CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence            88888 999999999999 66643221                                                     


Q ss_pred             ----------------------CCchhhcCCCCCCEEEcccCCCCC-----------------CCchhhh--cCCCCcEE
Q 040237          115 ----------------------EIPPEIANLSRLSYLNLSDSFFTG-----------------QIPSEIL--ELSNLVSL  153 (219)
Q Consensus       115 ----------------------~~p~~l~~l~~L~~L~Ls~n~l~g-----------------~lp~~~~--~l~~L~~L  153 (219)
                                            .+|+.+.++++|++|++++|.++|                 .+|..++  ++++|++|
T Consensus       417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L  496 (876)
T 4ecn_A          417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV  496 (876)
T ss_dssp             CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred             cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence                                  067778888899999999999887                 3888876  88899999


Q ss_pred             EccCCCCCCCcccc-----------------CCc-cccHHHhcCC-------CCCEEeccCccCCCCCcCh--hhcCCCC
Q 040237          154 DLSGNGYSGGFLEL-----------------GKT-SLTNLVQKLT-------NLETLNLGRVLIFNTPIPH--NLGNLSS  206 (219)
Q Consensus       154 ~Ls~N~l~g~~~~~-----------------~~~-~~p~~l~~l~-------~L~~L~l~~N~l~~~~~p~--~l~~l~~  206 (219)
                      ++++|.+.|.+|..                 -.+ .+|..+++++       +|++|++++|.++  .+|.  .++++++
T Consensus       497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~  574 (876)
T 4ecn_A          497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVK  574 (876)
T ss_dssp             EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTT
T ss_pred             ECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCC
Confidence            99988887765521                 011 3555555444       6777777777765  3666  7777777


Q ss_pred             CCEeeccccccc
Q 040237          207 LRFLSLQNCLVQ  218 (219)
Q Consensus       207 L~~L~ls~N~l~  218 (219)
                      |++|++++|+++
T Consensus       575 L~~L~Ls~N~l~  586 (876)
T 4ecn_A          575 LGLLDCVHNKVR  586 (876)
T ss_dssp             CCEEECTTSCCC
T ss_pred             CCEEECCCCCcc
Confidence            777777777664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.81  E-value=1.8e-20  Score=172.89  Aligned_cols=168  Identities=17%  Similarity=0.129  Sum_probs=99.3

Q ss_pred             CCHHHHHHHHHHHhcCccCCCCcccCCCCCCCccCCCCcccccCCCCC------------CCcccc---ccc-cccCCCC
Q 040237           38 CHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAA------------SKVPST---LAA-AFSILSI  101 (219)
Q Consensus        38 ~~~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~c------------~~l~g~---lp~-l~~l~~L  101 (219)
                      ..++|++||++||+++.++.      .+.+|..+.  .+|+|. |+.|            .++.|.   +|+ +.++++|
T Consensus         9 ~~~~~~~all~~k~~~~~~~------~l~~W~~~~--~~C~w~-gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L   79 (768)
T 3rgz_A            9 SLYREIHQLISFKDVLPDKN------LLPDWSSNK--NPCTFD-GVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL   79 (768)
T ss_dssp             CHHHHHHHHHHHHTTCSCTT------SSTTCCTTS--CGGGST-TEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred             CCHHHHHHHHHHHhhCCCcc------cccCCCCCC--CCcCCc-ceEECCCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence            35789999999999998543      366786433  689999 7777            335565   555 5555555


Q ss_pred             CEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch--hhhcCCCCcEEEccCCCCCCCccccC-----------
Q 040237          102 LSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS--EILELSNLVSLDLSGNGYSGGFLELG-----------  168 (219)
Q Consensus       102 ~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~--~~~~l~~L~~L~Ls~N~l~g~~~~~~-----------  168 (219)
                      +.++++.+.+.  .+|+.+..+++|++|++++|.++|.+|.  .++++++|++|++++|.+++.+|...           
T Consensus        80 ~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  157 (768)
T 3rgz_A           80 ESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD  157 (768)
T ss_dssp             CEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred             cccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence            55555555443  2344555555555555555555555555  55555555555555555543222100           


Q ss_pred             ------CccccHH---HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          169 ------KTSLTNL---VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       169 ------~~~~p~~---l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                            .+..|..   +.++++|++|++++|.+++ .+|.  ..+++|++|++++|+++|
T Consensus       158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~--~~l~~L~~L~Ls~n~l~~  214 (768)
T 3rgz_A          158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISG-DVDV--SRCVNLEFLDVSSNNFST  214 (768)
T ss_dssp             CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEES-CCBC--TTCTTCCEEECCSSCCCS
T ss_pred             CCCCccCCcCChhhhhhccCCCCCEEECCCCcccc-cCCc--ccCCcCCEEECcCCcCCC
Confidence                  1123333   4566666666666666655 3332  566777777777776653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=1.9e-17  Score=131.67  Aligned_cols=112  Identities=21%  Similarity=0.192  Sum_probs=70.7

Q ss_pred             cccCCCCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p  173 (219)
                      +..+++|++|++++|.+..  +| ..+..+++|++|++++|++++..+..+..+++|++|++++|+++         .+|
T Consensus        60 ~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~---------~lp  128 (229)
T 3e6j_A           60 FDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT---------ELP  128 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------SCC
T ss_pred             hhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc---------ccC
Confidence            5555566666666666553  33 23455666666666666665333334455666666666666553         466


Q ss_pred             HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      ..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++
T Consensus       129 ~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          129 RGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCcc
Confidence            667777888888888888866 34456777788888888888765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.74  E-value=4.6e-18  Score=156.82  Aligned_cols=88  Identities=30%  Similarity=0.447  Sum_probs=69.5

Q ss_pred             CCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhc
Q 040237          123 LSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLG  202 (219)
Q Consensus       123 l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~  202 (219)
                      +++|++||+++|+++|.+|..++.+++|+.|++++|.++|        .+|..++++++|++||+++|+++| .+|..+.
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--------~ip~~l~~L~~L~~LdLs~N~l~g-~ip~~l~  701 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG--------SIPDEVGDLRGLNILDLSSNKLDG-RIPQAMS  701 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCEE-CCCGGGG
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC--------CCChHHhCCCCCCEEECCCCcccC-cCChHHh
Confidence            3456666666666666677677777777777777777644        678888999999999999999998 8899999


Q ss_pred             CCCCCCEeecccccccC
Q 040237          203 NLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       203 ~l~~L~~L~ls~N~l~G  219 (219)
                      ++++|++|++++|+++|
T Consensus       702 ~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          702 ALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             GCCCCSEEECCSSEEEE
T ss_pred             CCCCCCEEECcCCcccc
Confidence            99999999999998875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=1.8e-17  Score=131.07  Aligned_cols=124  Identities=16%  Similarity=0.073  Sum_probs=104.1

Q ss_pred             CCccccccc--cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCC
Q 040237           86 SKVPSTLAA--AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG  163 (219)
Q Consensus        86 ~~l~g~lp~--l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~  163 (219)
                      +.+++..+.  +..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ 
T Consensus        42 N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-  119 (220)
T 2v70_A           42 NEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-  119 (220)
T ss_dssp             SCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC-
T ss_pred             CcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe-
Confidence            344444444  78899999999999999864 45578999999999999999997767778999999999999999854 


Q ss_pred             ccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       164 ~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                             ..|..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++
T Consensus       120 -------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          120 -------VGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             -------BCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             -------ECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcCCcC
Confidence                   446678889999999999999988 668889999999999999998763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=1.9e-17  Score=128.17  Aligned_cols=132  Identities=20%  Similarity=0.125  Sum_probs=110.6

Q ss_pred             CcccccCCCCCCC-ccccccc-cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCc
Q 040237           75 KVASWKQGEAASK-VPSTLAA-AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLV  151 (219)
Q Consensus        75 ~~~~W~~~~~c~~-l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~  151 (219)
                      +.|.|. ..+|.+ --+.+|. +..  ++++|++++|.+.+. .+. .+..+++|++|++++|.+++..|..+..+++|+
T Consensus         6 C~C~~~-~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   81 (192)
T 1w8a_A            6 CHCEGT-TVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             SEEETT-EEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CEECCC-EEEcCCCCcCcCccCCCC--CCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence            667786 566632 2356676 433  899999999999853 333 489999999999999999988899999999999


Q ss_pred             EEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          152 SLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       152 ~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      +|++++|++++        ..+..+..+++|++|++++|++++ ..|..+..+++|++|++++|++++
T Consensus        82 ~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           82 ELQLGENKIKE--------ISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EEECCSCCCCE--------ECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             EEECCCCcCCc--------cCHHHhcCCCCCCEEECCCCcCCe-eCHHHhhcCCCCCEEEeCCCCccC
Confidence            99999999954        345567889999999999999998 778899999999999999999875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=1e-16  Score=125.11  Aligned_cols=115  Identities=23%  Similarity=0.218  Sum_probs=83.4

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|++|++++|+++.. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++        ..+.
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~  118 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS--------LPDG  118 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTT
T ss_pred             hcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc--------cCHh
Confidence            66777888888888877742 33346777888888888888774444456777888888888887743        2234


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      .+..+++|++|++++|.+++ ..+..+..+++|++|++++|++.+
T Consensus       119 ~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          119 VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             HhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeec
Confidence            46778888888888888877 444557888888888888887754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.71  E-value=2e-17  Score=137.27  Aligned_cols=135  Identities=21%  Similarity=0.407  Sum_probs=116.5

Q ss_pred             CcccccCCCCCCC--ccccccc-cccCCCCCEeecCCCCCCC--CCCchhhcCCCCCCEEEccc-CCCCCCCchhhhcCC
Q 040237           75 KVASWKQGEAASK--VPSTLAA-AFSILSILSGNLAGNDFRY--PEIPPEIANLSRLSYLNLSD-SFFTGQIPSEILELS  148 (219)
Q Consensus        75 ~~~~W~~~~~c~~--l~g~lp~-l~~l~~L~~L~L~~n~l~~--~~~p~~l~~l~~L~~L~Ls~-n~l~g~lp~~~~~l~  148 (219)
                      ...+|..+.+|..  ..|.... .....++++|++++|.+.+  . +|+.+..+++|++|++++ |.+.+.+|..+.+++
T Consensus        23 ~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~  101 (313)
T 1ogq_A           23 TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT  101 (313)
T ss_dssp             GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT
T ss_pred             cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCC
Confidence            4678976555433  6665443 2223689999999999997  6 899999999999999995 999999999999999


Q ss_pred             CCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          149 NLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       149 ~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      +|++|++++|.+++        .+|..+.++++|++|++++|.+++ .+|..+..+++|++|++++|+++|
T Consensus       102 ~L~~L~Ls~n~l~~--------~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~  163 (313)
T 1ogq_A          102 QLHYLYITHTNVSG--------AIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISG  163 (313)
T ss_dssp             TCSEEEEEEECCEE--------ECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             CCCEEECcCCeeCC--------cCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCCCCeEECcCCcccC
Confidence            99999999999943        678889999999999999999998 899999999999999999999863

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=9.8e-17  Score=126.78  Aligned_cols=113  Identities=19%  Similarity=0.144  Sum_probs=86.9

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGYSGGFLELGKTSLT  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p  173 (219)
                      +..+++|++|++++|.+.+. .|..+..+++|++|++++|.++ .+|. .+..+++|++|++++|.+++        ..|
T Consensus        52 ~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~--------~~~  121 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINC--------LRV  121 (220)
T ss_dssp             STTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC--------CCT
T ss_pred             hhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCE--------eCH
Confidence            67778888888888888764 5677888888888888888887 4444 45778888888888888753        345


Q ss_pred             HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      ..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++
T Consensus       122 ~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          122 DAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             HHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCcC
Confidence            667788888888888888877 45566888888888888888764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.68  E-value=4.2e-16  Score=118.70  Aligned_cols=133  Identities=18%  Similarity=0.078  Sum_probs=105.1

Q ss_pred             CcccccCCCCCCCc-cccccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEE
Q 040237           75 KVASWKQGEAASKV-PSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSL  153 (219)
Q Consensus        75 ~~~~W~~~~~c~~l-~g~lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L  153 (219)
                      +.|+|. ++.|.+. ...+|. ...+++++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus         5 C~C~~~-~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (177)
T 2o6r_A            5 CSCSGT-EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL   81 (177)
T ss_dssp             CEEETT-EEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CEeCCC-EEEecCCCCccCCC-CCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence            667887 6666432 233444 2236899999999999953 44567899999999999999995555567899999999


Q ss_pred             EccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          154 DLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       154 ~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      ++++|.+++        ..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++|
T Consensus        82 ~l~~N~l~~--------~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           82 YLHENKLQS--------LPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             ECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ECCCCCccc--------cCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeec
Confidence            999999964        334457889999999999999987 444556889999999999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.68  E-value=5.4e-16  Score=124.56  Aligned_cols=115  Identities=20%  Similarity=0.153  Sum_probs=70.7

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|++|++++|.++.. .+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++        ..+.
T Consensus        79 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~  149 (251)
T 3m19_A           79 FDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS--------IPAG  149 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTT
T ss_pred             hccCCcCCEEECCCCccccc-ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc--------cCHH
Confidence            55555666666666665532 33345556666666666666653333334556666666666666532        2233


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      .++.+++|++|++++|.+++ ..+..+..+++|++|++++|++++
T Consensus       150 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          150 AFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             HcCcCcCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCceeC
Confidence            56777788888888888776 445567777888888888887753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.67  E-value=8.3e-16  Score=123.46  Aligned_cols=124  Identities=20%  Similarity=0.195  Sum_probs=105.4

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      +.+.+..+. +..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++  
T Consensus        45 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--  121 (251)
T 3m19_A           45 TGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS--  121 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--
T ss_pred             CCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC--
Confidence            445555555 88999999999999999975 66678999999999999999996666678999999999999999853  


Q ss_pred             cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                            ..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|++++
T Consensus       122 ------~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A          122 ------LPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             ------CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ------cChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCc
Confidence                  233446889999999999999987 455579999999999999999864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.67  E-value=2.4e-16  Score=131.75  Aligned_cols=109  Identities=25%  Similarity=0.348  Sum_probs=56.9

Q ss_pred             CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHh
Q 040237           98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQ  177 (219)
Q Consensus        98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~  177 (219)
                      +++|++|++++|.++  .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+        .+|..++
T Consensus       182 l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~--------~~p~~~~  250 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR--------NYPPIFG  250 (328)
T ss_dssp             STTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCC--------BCCCCTT
T ss_pred             CCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchh--------hhHHHhc
Confidence            344444444444443  24444444444444444444444 234444444555555555544432        3445555


Q ss_pred             cCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          178 KLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       178 ~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      .+++|++|++++|.+.+ .+|..+.++++|++|++++|++.
T Consensus       251 ~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          251 GRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             CCCCCCEEECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTC
T ss_pred             CCCCCCEEECCCCCchh-hcchhhhcCCCCCEEeCCCCCch
Confidence            66666666666666665 56666666666666666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=5.9e-16  Score=119.96  Aligned_cols=130  Identities=20%  Similarity=0.158  Sum_probs=107.2

Q ss_pred             CcccccCCCCCCC-ccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcE
Q 040237           75 KVASWKQGEAASK-VPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS  152 (219)
Q Consensus        75 ~~~~W~~~~~c~~-l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~  152 (219)
                      +.|.|. .+.|.+ --..+|. +.  +++++|++++|.++  .+|..+..+++|++|++++|.+++..+..|..+++|++
T Consensus         8 C~C~~~-~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~   82 (193)
T 2wfh_A            8 CTCLDT-VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT   82 (193)
T ss_dssp             CEEETT-EEECTTSCCSSCCSCCC--TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEeCCC-EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence            455565 556633 2345665 43  58999999999998  48899999999999999999999766778999999999


Q ss_pred             EEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          153 LDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       153 L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      |++++|.+++        ..+..+..+++|++|++++|.++. ..+..+..+++|++|++++|++.
T Consensus        83 L~Ls~N~l~~--------i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           83 LILSYNRLRC--------IPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             EECCSSCCCB--------CCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EECCCCccCE--------eCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCee
Confidence            9999999954        345568899999999999999977 44456889999999999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.65  E-value=1.8e-15  Score=122.91  Aligned_cols=115  Identities=23%  Similarity=0.212  Sum_probs=72.9

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++        ..+.
T Consensus       105 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~  175 (272)
T 3rfs_A          105 FDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--------LPEG  175 (272)
T ss_dssp             TTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTT
T ss_pred             hcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc--------cCHH
Confidence            55566666666666666542 33345566666666666666664434445566666666666666542        2334


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      .++.+++|++|++++|.+++ ..|..+..+++|++|++++|+++|
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             HhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccc
Confidence            45677888888888888877 555667778888888888887754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.64  E-value=2.9e-15  Score=121.52  Aligned_cols=121  Identities=21%  Similarity=0.202  Sum_probs=61.8

Q ss_pred             cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcccc-C----
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLEL-G----  168 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~-~----  168 (219)
                      +..+++|++|++++|.++.  +|. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.. .    
T Consensus        57 ~~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  134 (270)
T 2o6q_A           57 FHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK  134 (270)
T ss_dssp             SSSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hcCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence            5555666666666666552  333 2355555666666655555333334455555555555555554321100 0    


Q ss_pred             ----------Ccccc-HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          169 ----------KTSLT-NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       169 ----------~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                                ...+| ..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++
T Consensus       135 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCC
Confidence                      00122 224555666666666666655 33344556666666666666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.64  E-value=2.6e-16  Score=142.38  Aligned_cols=130  Identities=15%  Similarity=0.197  Sum_probs=99.0

Q ss_pred             CCCccccccc-cccCCCCCEeecCCCCCCCCC-----------------Cchhhc--CCCCCCEEEcccCCCCCCCchhh
Q 040237           85 ASKVPSTLAA-AFSILSILSGNLAGNDFRYPE-----------------IPPEIA--NLSRLSYLNLSDSFFTGQIPSEI  144 (219)
Q Consensus        85 c~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~-----------------~p~~l~--~l~~L~~L~Ls~n~l~g~lp~~~  144 (219)
                      |+.++| +|+ +.++++|++|++++|.+++ .                 +|+.+.  ++++|++|++++|.+.+.+|..+
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l  269 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL  269 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCG-GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCcccc-ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence            456666 666 7777777777777777774 1                 666666  77777777777777777777777


Q ss_pred             hcCCCCcEEEccCCC-CCC-Ccccc-------------C--------CccccH--HHhcCCCCCEEeccCccCCCCCcCh
Q 040237          145 LELSNLVSLDLSGNG-YSG-GFLEL-------------G--------KTSLTN--LVQKLTNLETLNLGRVLIFNTPIPH  199 (219)
Q Consensus       145 ~~l~~L~~L~Ls~N~-l~g-~~~~~-------------~--------~~~~p~--~l~~l~~L~~L~l~~N~l~~~~~p~  199 (219)
                      +++++|++|++++|+ ++| .+|..             .        ...+|.  .++++++|++|++++|.++| .+| 
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g-~ip-  347 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLP-  347 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE-ECC-
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc-chh-
Confidence            777777777777776 666 44310             0        125777  89999999999999999998 799 


Q ss_pred             hhcCCCCCCEeeccccccc
Q 040237          200 NLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       200 ~l~~l~~L~~L~ls~N~l~  218 (219)
                      .+..+++|++|++++|+++
T Consensus       348 ~~~~l~~L~~L~L~~N~l~  366 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQIT  366 (636)
T ss_dssp             CCEEEEEESEEECCSSEEE
T ss_pred             hhCCCCCCCEEECCCCccc
Confidence            8999999999999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1.6e-15  Score=114.46  Aligned_cols=121  Identities=22%  Similarity=0.216  Sum_probs=103.8

Q ss_pred             Ccc-ccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237           87 KVP-STLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        87 ~l~-g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      .+. +.+|. +..+++|++|++++|.++.  + ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. 
T Consensus        35 ~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-  110 (168)
T 2ell_A           35 KSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI-  110 (168)
T ss_dssp             BCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSS-
T ss_pred             CCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcc-
Confidence            354 67888 7899999999999999984  5 7789999999999999999977888888899999999999998641 


Q ss_pred             cccCCccccHHHhcCCCCCEEeccCccCCCCCcC---hhhcCCCCCCEeeccccccc
Q 040237          165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIP---HNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p---~~l~~l~~L~~L~ls~N~l~  218 (219)
                            ..+..+..+++|++|++++|.+++ ..+   ..+..+++|++|++++|.+.
T Consensus       111 ------~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          111 ------STLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ------GGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ------hhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh
Confidence                  122678899999999999999987 333   37889999999999999764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.63  E-value=2.9e-15  Score=118.98  Aligned_cols=131  Identities=18%  Similarity=0.141  Sum_probs=109.6

Q ss_pred             CcccccCCCCCCC-ccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcE
Q 040237           75 KVASWKQGEAASK-VPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS  152 (219)
Q Consensus        75 ~~~~W~~~~~c~~-l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~  152 (219)
                      +.|+|. +++|.+ --..+|. +.  ++|++|++++|.+.+. .|..+..+++|++|++++|+++...+..+..+++|++
T Consensus        17 ~~Cs~~-~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~   92 (229)
T 3e6j_A           17 CSCSGT-TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV   92 (229)
T ss_dssp             CEEETT-EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEeCC-EeEccCCCcCccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence            678898 677744 2455665 43  8899999999999975 6788999999999999999998444456789999999


Q ss_pred             EEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          153 LDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       153 L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      |++++|.+++        ..+..+..+++|++|++++|.++.  +|..+..+++|++|++++|++++
T Consensus        93 L~Ls~N~l~~--------l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~  149 (229)
T 3e6j_A           93 LDLGTNQLTV--------LPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKS  149 (229)
T ss_dssp             EECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCC
T ss_pred             EECCCCcCCc--------cChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCc
Confidence            9999999854        234457889999999999999965  89999999999999999999864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.63  E-value=1.6e-15  Score=119.78  Aligned_cols=131  Identities=22%  Similarity=0.187  Sum_probs=109.0

Q ss_pred             CcccccCCCCCCCc-cccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcE
Q 040237           75 KVASWKQGEAASKV-PSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS  152 (219)
Q Consensus        75 ~~~~W~~~~~c~~l-~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~  152 (219)
                      +.|.|. .++|.+. -..+|. +.  +++++|++++|+++.. .+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus         9 C~C~~~-~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~   84 (220)
T 2v9t_B            9 CTCSNN-IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS   84 (220)
T ss_dssp             SEEETT-EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred             CEECCC-EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence            566776 6677432 234555 43  6899999999999963 4457899999999999999999777889999999999


Q ss_pred             EEccCCCCCCCccccCCcccc-HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          153 LDLSGNGYSGGFLELGKTSLT-NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       153 L~Ls~N~l~g~~~~~~~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      |++++|.+++         +| ..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++
T Consensus        85 L~Ls~N~l~~---------l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~  142 (220)
T 2v9t_B           85 LVLYGNKITE---------LPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQT  142 (220)
T ss_dssp             EECCSSCCCC---------CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EECCCCcCCc---------cCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCE
Confidence            9999999853         34 346889999999999999988 677889999999999999999864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.62  E-value=4.4e-15  Score=120.65  Aligned_cols=118  Identities=21%  Similarity=0.198  Sum_probs=96.4

Q ss_pred             ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcc
Q 040237           92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTS  171 (219)
Q Consensus        92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~  171 (219)
                      ++.+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++        .
T Consensus        78 ~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------~  148 (272)
T 3rfs_A           78 ISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--------L  148 (272)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------C
T ss_pred             chhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc--------c
Confidence            34488888999999999998864 45567889999999999999986666667889999999999998853        2


Q ss_pred             ccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       172 ~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      .+..++.+++|++|++++|.+++ ..+..+..+++|++|++++|++++
T Consensus       149 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          149 PKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCcCCc
Confidence            34456888999999999999987 556667899999999999998864

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.62  E-value=1.8e-15  Score=130.87  Aligned_cols=124  Identities=23%  Similarity=0.135  Sum_probs=108.0

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      +.+.+..|. +..+++|++|++++|.+.+. .|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++  
T Consensus       285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--  361 (455)
T 3v47_A          285 SKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA--  361 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE--
T ss_pred             ccccccchhhcccCCCCCEEECCCCccccc-ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc--
Confidence            455666666 88999999999999999975 67789999999999999999997778889999999999999999853  


Q ss_pred             cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                            ..|..+..+++|++|++++|++++ ..+..+..+++|++|++++|++++
T Consensus       362 ------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          362 ------LGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             ------ECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ------cChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCccc
Confidence                  457788999999999999999987 445567899999999999999875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1.8e-15  Score=111.86  Aligned_cols=117  Identities=23%  Similarity=0.233  Sum_probs=96.6

Q ss_pred             Ccc-ccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237           87 KVP-STLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        87 ~l~-g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      .+. +.+|. +..+++|++|++++|.+++  + ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. 
T Consensus        28 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~-  103 (149)
T 2je0_A           28 RSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL-  103 (149)
T ss_dssp             BCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH-
T ss_pred             cCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh-
Confidence            455 67777 7889999999999999884  4 6788899999999999999977888888899999999999998531 


Q ss_pred             cccCCccccHHHhcCCCCCEEeccCccCCCCCcC---hhhcCCCCCCEeeccc
Q 040237          165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIP---HNLGNLSSLRFLSLQN  214 (219)
Q Consensus       165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p---~~l~~l~~L~~L~ls~  214 (219)
                            ..+..++.+++|++|++++|.+++ ..+   ..+..+++|++|++++
T Consensus       104 ------~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          104 ------STIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ------HHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred             ------HHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence                  234678889999999999999977 333   4788899999998864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=2.5e-15  Score=111.12  Aligned_cols=112  Identities=26%  Similarity=0.277  Sum_probs=97.7

Q ss_pred             cCCCCCEeecCCCCCC-CCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHH
Q 040237           97 SILSILSGNLAGNDFR-YPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL  175 (219)
Q Consensus        97 ~l~~L~~L~L~~n~l~-~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~  175 (219)
                      ..+++++|++++|.+. +. +|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++        .+|..
T Consensus        15 ~~~~l~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~--------~~~~~   83 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGK-LEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG--------GLEVL   83 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTB-CCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS--------CTHHH
T ss_pred             CCccCeEEEccCCcCChhH-HHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc--------hHHHH
Confidence            3468999999999998 54 888889999999999999999955  678899999999999999954        47888


Q ss_pred             HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       176 l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      +..+++|++|++++|.+++...+..+..+++|++|++++|++++
T Consensus        84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence            88899999999999999771133789999999999999999864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=2.3e-15  Score=116.70  Aligned_cols=111  Identities=22%  Similarity=0.304  Sum_probs=77.6

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCC-CCCCccccCCcccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG-YSGGFLELGKTSLT  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~-l~g~~~~~~~~~~p  173 (219)
                      +..+++|++|++++|.+++. .|..+..+++|++|++++|.+++..|..+..+++|++|++++|. ++         .+|
T Consensus        84 l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~---------~~~  153 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT---------DIM  153 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGG-GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC---------CCG
T ss_pred             hhcCCCCCEEEeECCccCcc-cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc---------ccH
Confidence            66677777777777777653 56667777777777777777776667777777777777777776 42         333


Q ss_pred             HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                       .+..+++|++|++++|.+++  ++ .+..+++|++|++++|++.+
T Consensus       154 -~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          154 -PLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             -GGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECBC----
T ss_pred             -hhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeCcccCC
Confidence             46777788888888888765  44 57777888888888887753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.61  E-value=2.3e-15  Score=134.54  Aligned_cols=115  Identities=23%  Similarity=0.218  Sum_probs=80.3

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      |.++++|++|+|++|++++. .|..|.++++|++|++++|++++..+..|.++++|++|++++|++++        ..+.
T Consensus        72 f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~--------l~~~  142 (635)
T 4g8a_A           72 FFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--------LENF  142 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC--------STTC
T ss_pred             HhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC--------CChh
Confidence            66777777777777777642 33457777777777777777774444456777777777777777643        1223


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      .++++++|++|++++|.+++..+|..+..+++|++|++++|+++
T Consensus       143 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            46777888888888888765456777778888888888888765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.60  E-value=6.9e-15  Score=113.93  Aligned_cols=115  Identities=21%  Similarity=0.174  Sum_probs=100.7

Q ss_pred             cccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCc
Q 040237           91 TLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT  170 (219)
Q Consensus        91 ~lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~  170 (219)
                      .+|.+..+++|++|++++|.+.   .++.+..+++|++|++++|.+++..|..+..+++|++|++++|.++        .
T Consensus        58 ~l~~l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~--------~  126 (197)
T 4ezg_A           58 DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD--------D  126 (197)
T ss_dssp             CCTTGGGCTTCSEEEEESCCCS---CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCB--------G
T ss_pred             ChHHHhcCCCCCEEEccCCCCC---cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccC--------c
Confidence            4556888999999999999776   3457899999999999999999878888999999999999999984        3


Q ss_pred             cccHHHhcCCCCCEEeccCcc-CCCCCcChhhcCCCCCCEeecccccccC
Q 040237          171 SLTNLVQKLTNLETLNLGRVL-IFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       171 ~~p~~l~~l~~L~~L~l~~N~-l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      ..+..++.+++|++|++++|. +..  +| .+..+++|++|++++|++++
T Consensus       127 ~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          127 SILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             GGHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTBCCCC
T ss_pred             HhHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCCCCcC
Confidence            567889999999999999998 644  66 68999999999999999864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.60  E-value=3.4e-15  Score=134.02  Aligned_cols=119  Identities=18%  Similarity=0.078  Sum_probs=101.1

Q ss_pred             ccccc--cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcccc
Q 040237           90 STLAA--AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLEL  167 (219)
Q Consensus        90 g~lp~--l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~  167 (219)
                      +.+|+  +..+++|++|++++|.+.+. .|..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++     
T Consensus        64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----  137 (597)
T 3oja_B           64 RKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-----  137 (597)
T ss_dssp             SEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----
T ss_pred             CCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-----
Confidence            45666  67889999999999999864 56689999999999999999997777778999999999999999853     


Q ss_pred             CCccccH-HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          168 GKTSLTN-LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       168 ~~~~~p~-~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                          +|. .++++++|++|++++|.+++ ..|..+..+++|++|++++|.+++
T Consensus       138 ----l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          138 ----LPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             ----CCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             ----CCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCC
Confidence                443 35889999999999999988 667788999999999999998764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=3.9e-15  Score=112.26  Aligned_cols=110  Identities=29%  Similarity=0.318  Sum_probs=97.3

Q ss_pred             cCCCCCEeecCCCCCC-CCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHH
Q 040237           97 SILSILSGNLAGNDFR-YPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL  175 (219)
Q Consensus        97 ~l~~L~~L~L~~n~l~-~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~  175 (219)
                      ..++|++|++++|.+. +. +|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++        .+|..
T Consensus        22 ~~~~L~~L~l~~n~l~~~~-i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~--------~~~~~   90 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGK-IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG--------GLDML   90 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTB-CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCS--------CCCHH
T ss_pred             CcccCCEEECCCCCCChhh-HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCch--------HHHHH
Confidence            3478999999999998 54 888889999999999999999854  678899999999999999954        47788


Q ss_pred             HhcCCCCCEEeccCccCCCCCcC--hhhcCCCCCCEeecccccccC
Q 040237          176 VQKLTNLETLNLGRVLIFNTPIP--HNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       176 l~~l~~L~~L~l~~N~l~~~~~p--~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      +.++++|++|++++|.+++  +|  ..+..+++|++|++++|++++
T Consensus        91 ~~~l~~L~~L~Ls~N~l~~--~~~~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A           91 AEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             HHHCTTCCEEECBSSSCCS--SGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred             HhhCCCCCEEeccCCccCc--chhHHHHhcCCCCCEEEeeCCcCcc
Confidence            8889999999999999977  44  789999999999999999864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.60  E-value=4.4e-15  Score=120.62  Aligned_cols=123  Identities=21%  Similarity=0.186  Sum_probs=83.6

Q ss_pred             Cccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 040237           87 KVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFL  165 (219)
Q Consensus        87 ~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~  165 (219)
                      .+++..+. +..+++|++|++++|.+... .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++   
T Consensus        39 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---  114 (276)
T 2z62_A           39 PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS---  114 (276)
T ss_dssp             CCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC---
T ss_pred             cccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccc---
Confidence            34443333 67777788888888877743 34467777788888888887776555667777788888887777743   


Q ss_pred             ccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          166 ELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       166 ~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                           ..+..++.+++|++|++++|.+.+..+|..+.++++|++|++++|+++
T Consensus       115 -----~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          115 -----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             -----STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             -----cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence                 122235667777777777777765335677777777777777777664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.59  E-value=4.1e-15  Score=133.09  Aligned_cols=125  Identities=17%  Similarity=0.149  Sum_probs=101.5

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      +.+++..+. +.++++|++|++++|.+++. .|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++  
T Consensus        42 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--  118 (606)
T 3vq2_A           42 NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS--  118 (606)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCC--
T ss_pred             CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccc--
Confidence            445555554 88899999999999998864 56778899999999999999987778889999999999999998854  


Q ss_pred             cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                            ..+..++++++|++|++++|.+.+..+|..++++++|++|++++|++++
T Consensus       119 ------~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A          119 ------LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             ------SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             ------ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence                  2234578888999999999988753578889999999999999988753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=2.8e-15  Score=137.61  Aligned_cols=111  Identities=26%  Similarity=0.341  Sum_probs=101.9

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+..|+.|+|++|.+.  .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++         .+|.
T Consensus       220 ~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~---------~lp~  287 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT---------SLPA  287 (727)
T ss_dssp             --CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS---------SCCS
T ss_pred             hccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC---------ccCh
Confidence            788999999999999998  48988889999999999999999 99999999999999999999984         5788


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      .++++++|++|+|++|.++.  +|..++++++|++|++++|+|+|
T Consensus       288 ~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             SGGGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCCS
T ss_pred             hhcCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCccCC
Confidence            89999999999999999954  89889999999999999999975

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.59  E-value=9.8e-15  Score=119.07  Aligned_cols=121  Identities=21%  Similarity=0.163  Sum_probs=54.7

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccc-cC-----
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLE-LG-----  168 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~-~~-----  168 (219)
                      +..+++|++|++++|.+.+. .|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+. +.     
T Consensus       101 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (285)
T ss_dssp             TTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hcCCcCCCEEECCCCcCCEE-CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence            44455555555555555432 334444555555555555555433333344555555555555544321000 00     


Q ss_pred             ----------CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          169 ----------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       169 ----------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                                .+..|..+..+++|++|++++|.+++ ..+..+..+++|++|++++|++
T Consensus       180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCE
T ss_pred             CEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCc
Confidence                      11123344444555555555555544 2223345555555555555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.59  E-value=7.2e-15  Score=119.89  Aligned_cols=91  Identities=21%  Similarity=0.140  Sum_probs=57.0

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|++|++++|.++.. .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++        ..+.
T Consensus       149 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~  219 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA--------LPTE  219 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC--------CCHH
T ss_pred             hccCCCccEEECCCCccccc-CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc--------CCHH
Confidence            44555555555555555531 22235555566666666666555555556666666666666666532        3346


Q ss_pred             HHhcCCCCCEEeccCccCCC
Q 040237          175 LVQKLTNLETLNLGRVLIFN  194 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~  194 (219)
                      .+..+++|++|++++|.+..
T Consensus       220 ~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          220 ALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             HHTTCTTCCEEECCSSCEEC
T ss_pred             HcccCcccCEEeccCCCccC
Confidence            68999999999999999976

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.59  E-value=9.5e-15  Score=110.85  Aligned_cols=61  Identities=21%  Similarity=0.194  Sum_probs=27.8

Q ss_pred             CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCC
Q 040237           99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGY  160 (219)
Q Consensus        99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l  160 (219)
                      +++++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus        30 ~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           30 TTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            4444455555544432 333444444555555555544422222334444455555554444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.59  E-value=6.6e-15  Score=116.23  Aligned_cols=132  Identities=19%  Similarity=0.111  Sum_probs=108.5

Q ss_pred             CcccccCCCCCCC-ccccccc-cccCCCCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCc
Q 040237           75 KVASWKQGEAASK-VPSTLAA-AFSILSILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLV  151 (219)
Q Consensus        75 ~~~~W~~~~~c~~-l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~  151 (219)
                      +.|.|. ..+|.+ --..+|. +.  ..+++|++++|.+++. .| ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus         9 C~C~~~-~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   84 (220)
T 2v70_A            9 CRCEGT-TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVL-EATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN   84 (220)
T ss_dssp             CEEETT-EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEE-CCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CEECCC-EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCcc-CchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence            567777 566632 2344665 43  3568999999999964 34 3588999999999999999976677899999999


Q ss_pred             EEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          152 SLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       152 ~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      +|++++|.+++        ..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++
T Consensus        85 ~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~  143 (220)
T 2v70_A           85 EILLTSNRLEN--------VQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITT  143 (220)
T ss_dssp             EEECCSSCCCC--------CCGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCC
T ss_pred             EEECCCCccCc--------cCHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECCCCcCCE
Confidence            99999999954        445668899999999999999998 678889999999999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.59  E-value=4.8e-15  Score=126.11  Aligned_cols=118  Identities=19%  Similarity=0.068  Sum_probs=98.2

Q ss_pred             ccccc--cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcccc
Q 040237           90 STLAA--AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLEL  167 (219)
Q Consensus        90 g~lp~--l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~  167 (219)
                      +.+|+  +..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++      
T Consensus        58 ~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------  130 (390)
T 3o6n_A           58 RKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS------  130 (390)
T ss_dssp             SEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------
T ss_pred             hhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC------
Confidence            44666  67889999999999999854 4558899999999999999999777777899999999999999885      


Q ss_pred             CCccccHH-HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          168 GKTSLTNL-VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       168 ~~~~~p~~-l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                         .+|.. ++++++|++|++++|.+.+ ..|..+..+++|++|++++|+++
T Consensus       131 ---~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          131 ---SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             ---CCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCS
T ss_pred             ---cCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCC
Confidence               34444 5788999999999999877 56677888999999999998875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.58  E-value=1.8e-14  Score=112.25  Aligned_cols=133  Identities=17%  Similarity=0.103  Sum_probs=105.9

Q ss_pred             CcccccCCCCCCCc-cccccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEE
Q 040237           75 KVASWKQGEAASKV-PSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSL  153 (219)
Q Consensus        75 ~~~~W~~~~~c~~l-~g~lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L  153 (219)
                      +.|.|. ++.|.+. ...+|. ...+++++|++++|+++.. .+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus         5 C~C~~~-~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (208)
T 2o6s_A            5 CSCSGT-TVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL   81 (208)
T ss_dssp             CEEETT-EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CEECCC-EEEecCCCccCCCC-CCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEE
Confidence            667898 6777442 223443 2246899999999999953 44568899999999999999995545567899999999


Q ss_pred             EccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          154 DLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       154 ~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      ++++|.+++        ..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|++++
T Consensus        82 ~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           82 NLSTNQLQS--------LPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             ECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ECCCCcCCc--------cCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccce
Confidence            999999853        233457889999999999999987 555668899999999999998864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.58  E-value=2.3e-14  Score=116.24  Aligned_cols=114  Identities=22%  Similarity=0.235  Sum_probs=73.8

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|++|++++|.++.. .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++        ..+.
T Consensus       105 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~  175 (270)
T 2o6q_A          105 FDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR--------VPEG  175 (270)
T ss_dssp             TTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--------CCTT
T ss_pred             cccccCCCEEECCCCccCee-CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE--------eChh
Confidence            44455555555555555532 33344555555555555555553323335555666666666665532        2234


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      .+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          176 AFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             HhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCee
Confidence            57889999999999999987 44556889999999999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=1.9e-15  Score=140.85  Aligned_cols=128  Identities=19%  Similarity=0.235  Sum_probs=97.8

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCC-----------------CCCchhhc--CCCCCCEEEcccCCCCCCCchhhh
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRY-----------------PEIPPEIA--NLSRLSYLNLSDSFFTGQIPSEIL  145 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~-----------------~~~p~~l~--~l~~L~~L~Ls~n~l~g~lp~~~~  145 (219)
                      +.++| +|+ +.++++|++|++++|.+++                 . +|+.++  ++++|++|++++|.+.+.+|..++
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~-iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY-ENEELSWSNLKDLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH-TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc-CChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence            45666 666 7777777777777777775                 2 666666  777777777777777777777777


Q ss_pred             cCCCCcEEEccCCC-CCC-Cccc--------------cC--------CccccH--HHhcCCCCCEEeccCccCCCCCcCh
Q 040237          146 ELSNLVSLDLSGNG-YSG-GFLE--------------LG--------KTSLTN--LVQKLTNLETLNLGRVLIFNTPIPH  199 (219)
Q Consensus       146 ~l~~L~~L~Ls~N~-l~g-~~~~--------------~~--------~~~~p~--~l~~l~~L~~L~l~~N~l~~~~~p~  199 (219)
                      ++++|+.|++++|+ ++| .+|.              +.        ...+|.  .++++++|++|++++|.++  .+| 
T Consensus       513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-  589 (876)
T 4ecn_A          513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLE-  589 (876)
T ss_dssp             GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC--BCC-
T ss_pred             CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc--cch-
Confidence            77777777777776 666 3331              10        126787  8999999999999999996  488 


Q ss_pred             hhcCCCCCCEeeccccccc
Q 040237          200 NLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       200 ~l~~l~~L~~L~ls~N~l~  218 (219)
                      .++.+++|++|++++|+++
T Consensus       590 ~~~~L~~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYNQIE  608 (876)
T ss_dssp             CCCTTSEESEEECCSSCCS
T ss_pred             hhcCCCcceEEECcCCccc
Confidence            8999999999999999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.57  E-value=4.7e-15  Score=122.09  Aligned_cols=123  Identities=24%  Similarity=0.281  Sum_probs=86.8

Q ss_pred             ccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccc
Q 040237           88 VPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLE  166 (219)
Q Consensus        88 l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~  166 (219)
                      +.+..+. +..+++|++|++++|.+.+..+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++    
T Consensus       138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----  213 (306)
T 2z66_A          138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS----  213 (306)
T ss_dssp             CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB----
T ss_pred             CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc----
Confidence            3344444 66677777777777776641156667777777777777777776556677777777777777777643    


Q ss_pred             cCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCC-CCCEeecccccccC
Q 040237          167 LGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLS-SLRFLSLQNCLVQG  219 (219)
Q Consensus       167 ~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~-~L~~L~ls~N~l~G  219 (219)
                          ..+..+..+++|++|++++|.+++ ..|..+..++ +|++|++++|++++
T Consensus       214 ----~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          214 ----LDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             ----CCSGGGTTCTTCCEEECTTSCCCB-CSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             ----cChhhccCcccCCEeECCCCCCcc-cCHHHHHhhhccCCEEEccCCCeec
Confidence                223456778888888888888887 6777777774 88888888888753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.57  E-value=9.8e-15  Score=123.35  Aligned_cols=122  Identities=20%  Similarity=0.209  Sum_probs=90.9

Q ss_pred             Cccccccc-cc-cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237           87 KVPSTLAA-AF-SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        87 ~l~g~lp~-l~-~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      .+++..+. +. .+++|++|++++|+++.. .+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++  
T Consensus        50 ~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--  126 (361)
T 2xot_A           50 NLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV--  126 (361)
T ss_dssp             CCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--
T ss_pred             CCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE--
Confidence            33433333 54 788888888888888853 44568888888888888888885555567888888888888888742  


Q ss_pred             cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhh----cCCCCCCEeecccccccC
Q 040237          165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNL----GNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l----~~l~~L~~L~ls~N~l~G  219 (219)
                            ..|..+..+++|++|++++|.+++  +|..+    ..+++|++|++++|+|++
T Consensus       127 ------~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A          127 ------VDRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             ------ECTTTTTTCTTCCEEECCSSCCCS--CCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             ------ECHHHhCCcccCCEEECCCCcCCe--eCHHHhcCcccCCcCCEEECCCCCCCc
Confidence                  345678888899999999999876  56543    568899999999998763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.57  E-value=1.1e-14  Score=125.94  Aligned_cols=124  Identities=20%  Similarity=0.151  Sum_probs=101.2

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCC-chhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCC
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEI-PPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG  163 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~-p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~  163 (219)
                      +.+.+..|. +.++++|++|++++|.+.+. + +..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ 
T Consensus        40 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-  117 (455)
T 3v47_A           40 NSIAELNETSFSRLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG-  117 (455)
T ss_dssp             SCCCEECTTTTSSCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBT-
T ss_pred             CccCcCChhHhccCccccEEECcCCcccce-ECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCc-
Confidence            445555565 88899999999999988754 5 4568889999999999999987778889999999999999998854 


Q ss_pred             ccccCCccccHH--HhcCCCCCEEeccCccCCCCCcChh-hcCCCCCCEeecccccccC
Q 040237          164 FLELGKTSLTNL--VQKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       164 ~~~~~~~~~p~~--l~~l~~L~~L~l~~N~l~~~~~p~~-l~~l~~L~~L~ls~N~l~G  219 (219)
                             ..+..  ++.+++|++|++++|.+++ ..|.. +.++++|++|++++|++++
T Consensus       118 -------~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A          118 -------AVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             -------HHHHSSTTTTCTTCCEEECCSSBCCS-CCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             -------cccCcccccCcccCCEEECCCCccCc-cCcccccCCCCcccEEeCCCCcccc
Confidence                   34444  7888999999999999987 55655 7889999999999998764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=2.7e-14  Score=108.77  Aligned_cols=101  Identities=24%  Similarity=0.230  Sum_probs=47.2

Q ss_pred             EeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH-HHhcCCC
Q 040237          103 SGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN-LVQKLTN  181 (219)
Q Consensus       103 ~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~-~l~~l~~  181 (219)
                      .+++++|++.  .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|++++         +|. .+..+++
T Consensus        16 ~l~~~~n~l~--~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------i~~~~~~~l~~   82 (174)
T 2r9u_A           16 LVNCQNIRLA--SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA---------IPTGVFDKLTQ   82 (174)
T ss_dssp             EEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------CCTTTTTTCTT
T ss_pred             EEEeCCCCCC--ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc---------cChhHhCCcch
Confidence            4455555544  2444332  445555555555554444445555555555555555432         221 2344455


Q ss_pred             CCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          182 LETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       182 L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      |++|++++|++++ ..+..+..+++|++|++++|++
T Consensus        83 L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           83 LTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCB
T ss_pred             hhEEECCCCccce-eCHHHhccccCCCEEEeCCCCc
Confidence            5555555555544 2222344555555555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.56  E-value=1.9e-14  Score=118.15  Aligned_cols=113  Identities=22%  Similarity=0.182  Sum_probs=77.9

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      ...+++|++|++++|.+.  .+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++        ..+.
T Consensus        73 ~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--------~~~~  142 (290)
T 1p9a_G           73 DGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT--------LPPG  142 (290)
T ss_dssp             CSCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC--------CCTT
T ss_pred             CCCCCcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc--------cChh
Confidence            345566666666666666  366666777777777777777774444567777777777777777643        2234


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      .+..+++|++|++++|++++ ..+..+..+++|++|++++|+++
T Consensus       143 ~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          143 LLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred             hcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCC
Confidence            45677888888888888866 33345677888888888888775

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.55  E-value=1.6e-14  Score=125.35  Aligned_cols=129  Identities=23%  Similarity=0.162  Sum_probs=85.0

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      +++.+..+. +.++++|++|++++|.+.+. .|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus        85 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  163 (452)
T 3zyi_A           85 NNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP  163 (452)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC
T ss_pred             CcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC
Confidence            344444455 77888888888888888764 5567888888888888888888444445777888888888888775321


Q ss_pred             ccc----------------CCcccc-HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          165 LEL----------------GKTSLT-NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       165 ~~~----------------~~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +..                ....++ ..+..+++|++|++++|.+++  +| .+..+++|++|++++|+++
T Consensus       164 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-NLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--CC-CCTTCTTCCEEECTTSCCS
T ss_pred             HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--cc-cccccccccEEECcCCcCc
Confidence            100                011122 235566677777777777755  34 3666777777777777664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.54  E-value=2.2e-14  Score=126.15  Aligned_cols=108  Identities=26%  Similarity=0.221  Sum_probs=76.9

Q ss_pred             CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhc
Q 040237           99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK  178 (219)
Q Consensus        99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~  178 (219)
                      +++++|++++|.+.+. .|..+..+++|++|++++|++++..|..+..+++|++|++++|.++         .+|..  .
T Consensus        21 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------~lp~~--~   88 (520)
T 2z7x_B           21 QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV---------KISCH--P   88 (520)
T ss_dssp             TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC---------EEECC--C
T ss_pred             ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee---------ecCcc--c
Confidence            6777777777777754 4566777777777777777777666677777777777777777764         34443  5


Q ss_pred             CCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       179 l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +++|++|++++|.+++..+|..++++++|++|++++|+++
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             cCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence            6777777777777765345677777777777777777664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.54  E-value=4.5e-14  Score=115.95  Aligned_cols=116  Identities=21%  Similarity=0.212  Sum_probs=90.2

Q ss_pred             cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCC
Q 040237           91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGK  169 (219)
Q Consensus        91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~  169 (219)
                      .+|. +..+++|++|++++|++++. .|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++       
T Consensus        91 ~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------  162 (290)
T 1p9a_G           91 SLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-------  162 (290)
T ss_dssp             SCCCCTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-------
T ss_pred             cCchhhccCCCCCEEECCCCcCccc-CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-------
Confidence            5666 77888888888888888853 44568888888888888888885555556788888888888888753       


Q ss_pred             cccc-HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          170 TSLT-NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       170 ~~~p-~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                        +| ..+..+++|++|++++|.++.  +|..+..+++|+++++++|++.
T Consensus       163 --l~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          163 --LPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             --CCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCCBC
T ss_pred             --cCHHHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCCcc
Confidence              33 345678888888888888864  7888888888888888888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.54  E-value=2e-14  Score=128.43  Aligned_cols=110  Identities=22%  Similarity=0.188  Sum_probs=95.1

Q ss_pred             CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhc
Q 040237           99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK  178 (219)
Q Consensus        99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~  178 (219)
                      +++++|+|++|+++.. .+..|.++++|++|++++|++++..|..|.++++|++|+|++|++++        -.+..+.+
T Consensus        52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--------l~~~~f~~  122 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--------LALGAFSG  122 (635)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--------ECGGGGTT
T ss_pred             cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--------CCHHHhcC
Confidence            4789999999999953 44579999999999999999996556679999999999999999853        23456899


Q ss_pred             CCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       179 l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +++|++|++++|++++ ..+..++++++|++|++++|+++
T Consensus       123 L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~  161 (635)
T 4g8a_A          123 LSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ  161 (635)
T ss_dssp             CTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCC
T ss_pred             CCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccc
Confidence            9999999999999987 44567999999999999999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.54  E-value=3.4e-14  Score=127.02  Aligned_cols=105  Identities=22%  Similarity=0.221  Sum_probs=92.5

Q ss_pred             CCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcC
Q 040237          100 SILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL  179 (219)
Q Consensus       100 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l  179 (219)
                      .|+.|++++|.+++  +|. +..+++|++|++++|.++ .+|..++.+++|+.|++++|.+++         +| .++.+
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~---------lp-~l~~l  507 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN---------VD-GVANL  507 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC---------CG-GGTTC
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC---------Cc-ccCCC
Confidence            47789999999984  776 899999999999999999 889999999999999999999853         56 78899


Q ss_pred             CCCCEEeccCccCCCCCc-ChhhcCCCCCCEeecccccccC
Q 040237          180 TNLETLNLGRVLIFNTPI-PHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       180 ~~L~~L~l~~N~l~~~~~-p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      ++|++|++++|.+++ .. |..++.+++|+.|++++|+++|
T Consensus       508 ~~L~~L~Ls~N~l~~-~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          508 PRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             SSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCcEEECCCCCCCC-CCCcHHHhcCCCCCEEEecCCcCCC
Confidence            999999999999988 44 8899999999999999998864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.53  E-value=3.8e-14  Score=122.57  Aligned_cols=128  Identities=23%  Similarity=0.147  Sum_probs=81.0

Q ss_pred             Cccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 040237           87 KVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFL  165 (219)
Q Consensus        87 ~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~  165 (219)
                      .+.+..+. +.++++|++|++++|.+... .+..+..+++|++|++++|+++...+..+..+++|++|++++|.+++..+
T Consensus        75 ~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  153 (440)
T 3zyj_A           75 QIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS  153 (440)
T ss_dssp             CCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT
T ss_pred             cCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH
Confidence            33433334 77777777777777777753 44567777777777777777774434456777777777777777643111


Q ss_pred             cc----------------CCcccc-HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          166 EL----------------GKTSLT-NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       166 ~~----------------~~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      ..                ....++ ..+.++++|++|++++|.++.  +| .+..+++|++|++++|+++
T Consensus       154 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCTTCSSCCEEECTTSCCC
T ss_pred             HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccCCCcccCEEECCCCccC
Confidence            00                011222 245667777777777777754  45 3667777888888887765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.53  E-value=5.5e-15  Score=122.37  Aligned_cols=112  Identities=20%  Similarity=0.159  Sum_probs=64.2

Q ss_pred             CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCC--Cchhh--hcCCCCcEEEccCCCCCCCccccCCcccc-
Q 040237           99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQ--IPSEI--LELSNLVSLDLSGNGYSGGFLELGKTSLT-  173 (219)
Q Consensus        99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~--lp~~~--~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p-  173 (219)
                      ++|++|++++|.+.+. .|..+..+++|++|++++|++.+.  +|..+  ..+++|++|++++|.+++      ...++ 
T Consensus       149 ~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~  221 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET------PSGVCS  221 (312)
T ss_dssp             TTCCEEEEESCSCCCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC------HHHHHH
T ss_pred             CCCcEEEeeCCCCccc-hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc------hHHHHH
Confidence            5555555555555542 334555555555555555555433  22333  455556666666555532      11222 


Q ss_pred             HHHhcCCCCCEEeccCccCCCCCcC-hhhcCCCCCCEeeccccccc
Q 040237          174 NLVQKLTNLETLNLGRVLIFNTPIP-HNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~~~~~p-~~l~~l~~L~~L~ls~N~l~  218 (219)
                      ..+..+++|++|++++|.+++ ..| ..+..+++|++|++++|+++
T Consensus       222 ~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          222 ALAAARVQLQGLDLSHNSLRD-AAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             HHHHTTCCCSEEECTTSCCCS-SCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             HHHhcCCCCCEEECCCCcCCc-ccchhhhhhcCCCCEEECCCCccC
Confidence            234566778888888888776 443 44556778888888888765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.53  E-value=1.6e-14  Score=118.89  Aligned_cols=122  Identities=16%  Similarity=0.218  Sum_probs=64.9

Q ss_pred             cccCCCCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCC-cccc-C---
Q 040237           95 AFSILSILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG-FLEL-G---  168 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~-~~~~-~---  168 (219)
                      +..+++|++|++++|.+.+. .+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. +|.. .   
T Consensus        97 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  175 (306)
T 2z66_A           97 FLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  175 (306)
T ss_dssp             EETCTTCCEEECTTSEEESS-TTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             cCCCCCCCEEECCCCccccc-ccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence            55555555555555555432 11 2444555555555555555444444444455555555555544320 0000 0   


Q ss_pred             ------------CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          169 ------------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       169 ------------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                                  ....|..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++
T Consensus       176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCC
T ss_pred             CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCc
Confidence                        11234556667777777777777765 34445667777777777777665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.53  E-value=1.5e-14  Score=127.83  Aligned_cols=123  Identities=27%  Similarity=0.279  Sum_probs=79.4

Q ss_pred             Cccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 040237           87 KVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFL  165 (219)
Q Consensus        87 ~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~  165 (219)
                      .+++..|. +.++++|++|++++|++.+. .|..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++.  
T Consensus        37 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--  113 (549)
T 2z81_A           37 KITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL--  113 (549)
T ss_dssp             CCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS--
T ss_pred             ccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc--
Confidence            34444444 77777777888877777754 556677777788888887777765555677777788888877777531  


Q ss_pred             ccCCccccHHHhcCCCCCEEeccCccCCCCCcC-hhhcCCCCCCEeeccccccc
Q 040237          166 ELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIP-HNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       166 ~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~l~~l~~L~~L~ls~N~l~  218 (219)
                           ..|..++++++|++|++++|.+.+ .+| ..+.++++|++|++++|+++
T Consensus       114 -----~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A          114 -----GVTSLFPNLTNLQTLRIGNVETFS-EIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             -----CSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCC
T ss_pred             -----chhhhhhccCCccEEECCCCcccc-ccCHhhhhcccccCeeeccCCccc
Confidence                 233445566666666666665433 343 35566666666666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.52  E-value=3.8e-14  Score=125.30  Aligned_cols=116  Identities=22%  Similarity=0.187  Sum_probs=101.3

Q ss_pred             cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCC
Q 040237           91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGK  169 (219)
Q Consensus        91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~  169 (219)
                      .+|+ +.  +++++|++++|++++. .|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++       
T Consensus        19 ~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-------   88 (549)
T 2z81_A           19 SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-------   88 (549)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-------
T ss_pred             cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-------
Confidence            4565 43  7899999999999975 67789999999999999999998777889999999999999999954       


Q ss_pred             ccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          170 TSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       170 ~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                       ..|..++++++|++|++++|.+++..+|..++++++|++|++++|++
T Consensus        89 -~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~  135 (549)
T 2z81_A           89 -LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET  135 (549)
T ss_dssp             -CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred             -cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcc
Confidence             45566999999999999999998634678899999999999999973

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.52  E-value=3.2e-14  Score=124.00  Aligned_cols=112  Identities=27%  Similarity=0.226  Sum_probs=55.2

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|++|++++|.+.+. .|..+.++++|++|++++|.++...+..+..+++|++|++++|.+++        ..+.
T Consensus        52 ~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~  122 (477)
T 2id5_A           52 FASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI--------LLDY  122 (477)
T ss_dssp             TTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE--------ECTT
T ss_pred             ccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc--------CChh
Confidence            55566666666666665543 45555666666666666666553222234555666666666665532        2233


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccc
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCL  216 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~  216 (219)
                      .+..+++|++|++++|.+.+ ..|..+..+++|++|++++|+
T Consensus       123 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~  163 (477)
T 2id5_A          123 MFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCN  163 (477)
T ss_dssp             TTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCC
T ss_pred             HccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCc
Confidence            33444444444444444433 223334444444444444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.52  E-value=5.9e-14  Score=127.26  Aligned_cols=121  Identities=24%  Similarity=0.155  Sum_probs=78.8

Q ss_pred             Cccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCCCCCc
Q 040237           87 KVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        87 ~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      .+++..+. +.++++|++|++++|.+.+. .|..+.++++|++|++++|.++ .+|. .+..+++|++|++++|.+++  
T Consensus        36 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~--  111 (680)
T 1ziw_A           36 QLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQK--  111 (680)
T ss_dssp             CCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCC--
T ss_pred             CCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCc--
Confidence            34443333 66777777777777777654 5666777777777777777776 3443 46777777777777777643  


Q ss_pred             cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                            ..|..++++++|++|++++|.+++ ..|..+.++++|++|++++|+++
T Consensus       112 ------~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A          112 ------IKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             ------CCSCTTTTCTTCCEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCC
T ss_pred             ------cChhHccccCCCCEEECCCCcccc-cCchhhcccccCCEEEccCCccc
Confidence                  223456666777777777777766 55566666777777777776654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.52  E-value=4.6e-14  Score=108.99  Aligned_cols=105  Identities=23%  Similarity=0.267  Sum_probs=91.2

Q ss_pred             CEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCC
Q 040237          102 LSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLT  180 (219)
Q Consensus       102 ~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~  180 (219)
                      +++++++|+++  .+|..+..  ++++|++++|.+++..+. .+..+++|++|++++|.+++        ..|..+..++
T Consensus        11 ~~l~~s~~~l~--~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~   78 (192)
T 1w8a_A           11 TTVDCTGRGLK--EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--------IEPNAFEGAS   78 (192)
T ss_dssp             TEEECTTSCCS--SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC--------BCTTTTTTCT
T ss_pred             CEEEcCCCCcC--cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC--------cCHhHcCCcc
Confidence            78999999997  58876654  999999999999955554 48999999999999999964        4577889999


Q ss_pred             CCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          181 NLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       181 ~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      +|++|++++|.+++ ..|..+..+++|++|++++|++++
T Consensus        79 ~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~  116 (192)
T 1w8a_A           79 HIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             TCCEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCE
T ss_pred             cCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCe
Confidence            99999999999988 666779999999999999999864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.52  E-value=4.4e-14  Score=125.25  Aligned_cols=124  Identities=21%  Similarity=0.181  Sum_probs=91.7

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      +.+++..+. +.++++|++|++++|++.+. .|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++. 
T Consensus        38 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-  115 (570)
T 2z63_A           38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-  115 (570)
T ss_dssp             CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS-
T ss_pred             CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccC-
Confidence            344444444 78888888888888888753 456688888888888888888866667788888888888888887531 


Q ss_pred             cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                             .+..++++++|++|++++|.+.+..+|..++++++|++|++++|+++
T Consensus       116 -------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          116 -------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             -------TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             -------CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence                   11236778888888888888765346778888888888888888764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.52  E-value=1.7e-14  Score=129.08  Aligned_cols=113  Identities=18%  Similarity=0.173  Sum_probs=47.1

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCC-CchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQ-IPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~-lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p  173 (219)
                      +..+++|++|++++|.+.+. .|..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|.+++        ..|
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~  490 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKID-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ--------ISW  490 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE--------ECT
T ss_pred             hhccccCCEEECcCCCCCcc-chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc--------cCh
Confidence            33344444444444444332 333344444444444444444331 33333444444444444444322        223


Q ss_pred             HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      ..+..+++|++|++++|++++ ..|..+.++++|++|++++|++
T Consensus       491 ~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          491 GVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             TTTTTCTTCCEEECCSSCCSC-EEGGGTTTCTTCCEEECTTSCC
T ss_pred             hhhcccccCCEEECCCCcCCC-cCHHHccCCCcCCEEECCCCcC
Confidence            334444444444444444444 3344444444444444444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.51  E-value=8.3e-14  Score=123.94  Aligned_cols=108  Identities=25%  Similarity=0.239  Sum_probs=64.7

Q ss_pred             CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhc
Q 040237           99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK  178 (219)
Q Consensus        99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~  178 (219)
                      +++++|++++|.+.+. .|..+..+++|++|++++|.+++..|..+..+++|++|++++|.++         .+|..  .
T Consensus        52 ~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------~lp~~--~  119 (562)
T 3a79_B           52 PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ---------NISCC--P  119 (562)
T ss_dssp             TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC---------EECSC--C
T ss_pred             CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC---------ccCcc--c
Confidence            5666666666666643 3455666666666666666666555556666666666666666653         23333  5


Q ss_pred             CCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       179 l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +++|++|++++|.+++..+|..++++++|++|++++|+++
T Consensus       120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence            5666666666666654233456666666666666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.51  E-value=3.6e-14  Score=132.17  Aligned_cols=124  Identities=20%  Similarity=0.183  Sum_probs=81.3

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCC-chhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCC
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEI-PPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG  163 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~-p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~  163 (219)
                      +.+++..|. +.++++|++|++++|...+. + |..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus        34 N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  112 (844)
T 3j0a_A           34 NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA  112 (844)
T ss_dssp             CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred             CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence            334444444 77777777777777755543 4 55677777777777777777766677777777777777777777542


Q ss_pred             ccccCCccccHH--HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          164 FLELGKTSLTNL--VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       164 ~~~~~~~~~p~~--l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                              +|..  ++++++|++|++++|.+++...+..++++++|++|++++|+++
T Consensus       113 --------~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A          113 --------VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             --------CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             --------cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence                    2222  5667777777777777766222356677777777777777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.51  E-value=4.7e-14  Score=119.14  Aligned_cols=132  Identities=20%  Similarity=0.086  Sum_probs=105.6

Q ss_pred             CcccccCCCCCCCc-cccccc-cccCCCCCEeecCCCCCCCCCCchhhc-CCCCCCEEEcccCCCCCCCchhhhcCCCCc
Q 040237           75 KVASWKQGEAASKV-PSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIA-NLSRLSYLNLSDSFFTGQIPSEILELSNLV  151 (219)
Q Consensus        75 ~~~~W~~~~~c~~l-~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~  151 (219)
                      +.|.+. .+.|.+. -..+|. +.  ..++.|++++|++++. .+..+. .+++|++|++++|++++..|..+..+++|+
T Consensus        16 C~C~~~-~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   91 (361)
T 2xot_A           16 CLCASN-ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR   91 (361)
T ss_dssp             CEEETT-EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CEECCC-EEEeCCCCcCccCccCC--CCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence            455665 5666331 233555 33  4589999999999964 445566 899999999999999966667899999999


Q ss_pred             EEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          152 SLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       152 ~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      +|++++|++++        ..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++
T Consensus        92 ~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A           92 YLDLSSNHLHT--------LDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             EEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             EEECCCCcCCc--------CCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCe
Confidence            99999999853        334568899999999999999987 567889999999999999999863

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.51  E-value=2.6e-14  Score=126.76  Aligned_cols=115  Identities=21%  Similarity=0.220  Sum_probs=77.9

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCC-CCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFT-GQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~-g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p  173 (219)
                      +..+++|++|++++|.+.+. .|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|+++        +..|
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~--------~~~~  487 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--------QLSP  487 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--------EECT
T ss_pred             hhcCCCCCEEeCcCCccccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc--------cCCh
Confidence            45555666666666655543 5555566666666666666665 345656666666666666666663        2346


Q ss_pred             HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      ..+..+++|++|++++|.+++ ..|..+.++++|++|++++|+++|
T Consensus       488 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          488 TAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hhhhcccCCCEEeCCCCcCCC-CCHHHhhcccCCcEEEecCCcccC
Confidence            677788888888888888877 556677888888888888888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.51  E-value=4.9e-14  Score=126.09  Aligned_cols=123  Identities=17%  Similarity=0.167  Sum_probs=86.0

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      +.+++..|. +.++++|++|++++|.+... .|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++  
T Consensus        43 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--  119 (606)
T 3t6q_A           43 NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS--  119 (606)
T ss_dssp             CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC--
T ss_pred             CccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc--
Confidence            344544454 77888888888888888764 67778888888888888888887777778888888888888888753  


Q ss_pred             cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                            ..+..++++++|++|++++|.+.+..+|..+ .+++|++|++++|+++
T Consensus       120 ------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~  166 (606)
T 3t6q_A          120 ------IDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIH  166 (606)
T ss_dssp             ------GGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCC
T ss_pred             ------CCcchhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCccc
Confidence                  2234456677777777777777652223333 3677777777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.50  E-value=2.4e-14  Score=120.26  Aligned_cols=66  Identities=24%  Similarity=0.256  Sum_probs=42.5

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCC
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYS  161 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~  161 (219)
                      +..+++|++|++++|.+++. .|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  137 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK  137 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS
T ss_pred             hccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc
Confidence            66667777777777776643 4455666777777777777776332333666777777777777664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.50  E-value=4.6e-14  Score=114.54  Aligned_cols=114  Identities=23%  Similarity=0.158  Sum_probs=72.8

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++       ..+|.
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~l~~  143 (276)
T 2z62_A           72 YQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-------FKLPE  143 (276)
T ss_dssp             TTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-------CCCCG
T ss_pred             ccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce-------ecCch
Confidence            67777788888887777753 44567777777777777777775444456777777777777777642       13566


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCC----Eeecccccc
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLR----FLSLQNCLV  217 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~----~L~ls~N~l  217 (219)
                      .++.+++|++|++++|.+++ ..+..+..+++|+    +|++++|++
T Consensus       144 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~l~l~L~ls~n~l  189 (276)
T 2z62_A          144 YFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPM  189 (276)
T ss_dssp             GGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCEEEECCSSCC
T ss_pred             hhccCCCCCEEECCCCCCCc-CCHHHhhhhhhccccceeeecCCCcc
Confidence            67777777777777777655 3333343333333    444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.50  E-value=1.6e-14  Score=119.54  Aligned_cols=125  Identities=18%  Similarity=0.128  Sum_probs=74.0

Q ss_pred             Cccccccc-c--ccCCCCCEeecCCCCCCCCCCchhhcCC-----CCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCC
Q 040237           87 KVPSTLAA-A--FSILSILSGNLAGNDFRYPEIPPEIANL-----SRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGN  158 (219)
Q Consensus        87 ~l~g~lp~-l--~~l~~L~~L~L~~n~l~~~~~p~~l~~l-----~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N  158 (219)
                      .+.+.+|. +  ..+++|++|++++|.+++  +|..+..+     ++|++|++++|++.+..|..+..+++|++|++++|
T Consensus       106 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  183 (312)
T 1wwl_A          106 EVTGTAPPPLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN  183 (312)
T ss_dssp             BCBSCCCCCSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred             cccchhHHHHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence            34455555 3  556666666666666653  34444444     66666666666666554556666666666666666


Q ss_pred             CCCCCccccCCccccHHH--hcCCCCCEEeccCccCCCC-CcC-hhhcCCCCCCEeecccccccC
Q 040237          159 GYSGGFLELGKTSLTNLV--QKLTNLETLNLGRVLIFNT-PIP-HNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       159 ~l~g~~~~~~~~~~p~~l--~~l~~L~~L~l~~N~l~~~-~~p-~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      ++.|.      ..++..+  +.+++|++|++++|.+++. .++ ..+..+++|++|++++|++++
T Consensus       184 ~l~~~------~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          184 PELGE------RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             TTCHH------HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             CcCcc------hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence            65331      1133444  6777788888888877630 122 233567788888888887754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.50  E-value=1.5e-13  Score=106.40  Aligned_cols=103  Identities=26%  Similarity=0.315  Sum_probs=91.1

Q ss_pred             CEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCC
Q 040237          102 LSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTN  181 (219)
Q Consensus       102 ~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~  181 (219)
                      +.+++++|.++  .+|..+.  +++++|++++|.++ .+|..+..+++|+.|++++|.+++        ..+..+..+++
T Consensus        13 ~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~--------i~~~~f~~l~~   79 (193)
T 2wfh_A           13 TVVRCSNKGLK--VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST--------LSNQSFSNMTQ   79 (193)
T ss_dssp             TEEECTTSCCS--SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC--------CCTTTTTTCTT
T ss_pred             CEEEcCCCCCC--cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE--------eCHhHccCCCC
Confidence            67999999998  5887654  68999999999999 889999999999999999999954        34566889999


Q ss_pred             CCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          182 LETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       182 L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      |++|++++|.+++ ..|..+..+++|++|++++|+++
T Consensus        80 L~~L~Ls~N~l~~-i~~~~f~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           80 LLTLILSYNRLRC-IPPRTFDGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             CCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCEEECCCCccCE-eCHHHhCCCCCCCEEECCCCCCC
Confidence            9999999999988 56678999999999999999986

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.49  E-value=1.6e-13  Score=114.08  Aligned_cols=111  Identities=20%  Similarity=0.245  Sum_probs=73.9

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|++|++++|.+.  .+|..+.  ++|++|++++|.+++..|..+..+++|+.|++++|.+++        ..+.
T Consensus       167 ~~~l~~L~~L~l~~n~l~--~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~  234 (330)
T 1xku_A          167 FQGMKKLSYIRIADTNIT--TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA--------VDNG  234 (330)
T ss_dssp             GGGCTTCCEEECCSSCCC--SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE--------ECTT
T ss_pred             ccCCCCcCEEECCCCccc--cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce--------eChh
Confidence            445555555555555554  2443332  566666666666665556677777778888888777743        3344


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      .+..+++|++|++++|.++.  +|..+..+++|++|++++|++++
T Consensus       235 ~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          235 SLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             TGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSCCCC
T ss_pred             hccCCCCCCEEECCCCcCcc--CChhhccCCCcCEEECCCCcCCc
Confidence            56777888888888888754  77777788888888888887753

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.49  E-value=2.3e-13  Score=113.15  Aligned_cols=118  Identities=16%  Similarity=0.151  Sum_probs=65.7

Q ss_pred             CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC----------
Q 040237           99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG----------  168 (219)
Q Consensus        99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~----------  168 (219)
                      +.+++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++. +|...          
T Consensus        52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~~L~~L~l~  129 (330)
T 1xku_A           52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVH  129 (330)
T ss_dssp             TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEEECC
T ss_pred             CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhcccccEEECC
Confidence            3556666666666542 33355666666666666666665445556666666666666665542 11100          


Q ss_pred             ----CccccHHHhcCCCCCEEeccCccCCCC-CcChhhcCCCCCCEeeccccccc
Q 040237          169 ----KTSLTNLVQKLTNLETLNLGRVLIFNT-PIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       169 ----~~~~p~~l~~l~~L~~L~l~~N~l~~~-~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                          ....+..+.++++|++|++++|.+... ..+..+.++++|++|++++|+++
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence                112234466677777777777766420 23455666666666666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.48  E-value=1.2e-13  Score=119.38  Aligned_cols=111  Identities=22%  Similarity=0.180  Sum_probs=70.1

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +.++++|++|++++|+++  .+| .+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++        ..+.
T Consensus       181 ~~~l~~L~~L~L~~n~l~--~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~  249 (440)
T 3zyj_A          181 FEGLSNLRYLNLAMCNLR--EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV--------IERN  249 (440)
T ss_dssp             TTTCSSCCEEECTTSCCS--SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--------ECTT
T ss_pred             hhcccccCeecCCCCcCc--ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE--------EChh
Confidence            445555555555555555  243 35556666666666666665555566666666666666666632        3345


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      .+..+++|++|++++|++++ ..+..+..+++|+.|++++|++
T Consensus       250 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          250 AFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             SSTTCTTCCEEECTTSCCCC-CCTTTTSSCTTCCEEECCSSCE
T ss_pred             hhcCCCCCCEEECCCCCCCc-cChhHhccccCCCEEEcCCCCc
Confidence            56677778888888887776 4445667777888888887765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.48  E-value=1.3e-13  Score=121.32  Aligned_cols=131  Identities=18%  Similarity=0.171  Sum_probs=94.9

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCC--CCCchhhcCCCCCCEEEcccCCCCCCCchh-hhcCCCCcEEEccCCCCC
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRY--PEIPPEIANLSRLSYLNLSDSFFTGQIPSE-ILELSNLVSLDLSGNGYS  161 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~--~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~-~~~l~~L~~L~Ls~N~l~  161 (219)
                      +.+.+.+|. +..+++|++|++++|.+.+  . +|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.++
T Consensus       334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~  412 (520)
T 2z7x_B          334 NLLTDTVFENCGHLTELETLILQMNQLKELSK-IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT  412 (520)
T ss_dssp             SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH-HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred             CccChhhhhhhccCCCCCEEEccCCccCcccc-chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence            445665666 7788888888888888874  2 4556778888888888888887656654 566777777777777776


Q ss_pred             CCccccC-------------CccccHHHhcCCCCCEEeccCccCCCCCcChh-hcCCCCCCEeecccccccC
Q 040237          162 GGFLELG-------------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       162 g~~~~~~-------------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~-l~~l~~L~~L~ls~N~l~G  219 (219)
                      +.+|..-             ...+|..+..+++|++|++++|+++.  +|.. +..+++|++|++++|++++
T Consensus       413 ~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          413 DTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS--VPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             GGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc--cCHHHhccCCcccEEECcCCCCcc
Confidence            5433110             12567777788888888888888865  6655 7788888889998888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.48  E-value=1.8e-13  Score=122.35  Aligned_cols=72  Identities=24%  Similarity=0.152  Sum_probs=40.0

Q ss_pred             cccccc-cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCC
Q 040237           89 PSTLAA-AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYS  161 (219)
Q Consensus        89 ~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~  161 (219)
                      .+..|. +..+++|++|++++|.+.+. .|. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.++
T Consensus       389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  462 (606)
T 3t6q_A          389 LSLKTEAFKECPQLELLDLAFTRLKVK-DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP  462 (606)
T ss_dssp             EEECTTTTTTCTTCSEEECTTCCEECC-TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred             CcCCHHHhcCCccCCeEECCCCcCCCc-ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence            333343 55566666666666665543 332 3555666666666666665555555555566666666666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=9.5e-14  Score=105.58  Aligned_cols=113  Identities=19%  Similarity=0.197  Sum_probs=91.7

Q ss_pred             cccccccCC-CCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCC
Q 040237           91 TLAAAFSIL-SILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGK  169 (219)
Q Consensus        91 ~lp~l~~l~-~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~  169 (219)
                      .++.+..+. +|++|++++|.+++  + +.+..+++|++|++++|.+++..|..+..+++|++|++++|.++        
T Consensus        33 ~i~~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~--------  101 (176)
T 1a9n_A           33 VIENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV--------  101 (176)
T ss_dssp             SCCCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC--------
T ss_pred             hhHHhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC--------
Confidence            345555555 99999999999984  4 67889999999999999998443344589999999999999984        


Q ss_pred             ccccH--HHhcCCCCCEEeccCccCCCCCcChh----hcCCCCCCEeecccccc
Q 040237          170 TSLTN--LVQKLTNLETLNLGRVLIFNTPIPHN----LGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       170 ~~~p~--~l~~l~~L~~L~l~~N~l~~~~~p~~----l~~l~~L~~L~ls~N~l  217 (219)
                       .+|.  .+..+++|++|++++|.++.  +|..    +..+++|++||+++|.+
T Consensus       102 -~~~~~~~l~~l~~L~~L~l~~N~i~~--~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          102 -ELGDLDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             -CGGGGGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETTEECCH
T ss_pred             -cchhhHhhhcCCCCCEEEecCCCCCC--cHhHHHHHHHHCCccceeCCCcCCH
Confidence             3454  68889999999999999965  6664    88999999999998864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.47  E-value=2.6e-13  Score=123.00  Aligned_cols=125  Identities=21%  Similarity=0.138  Sum_probs=105.0

Q ss_pred             CCCCCCc-cccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCC
Q 040237           82 GEAASKV-PSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG  159 (219)
Q Consensus        82 ~~~c~~l-~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~  159 (219)
                      .++|.+. -..+|. +.  +++++|++++|.+++. .+..+..+++|++|++++|.+++..|..+.++++|++|++++|.
T Consensus         8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             EEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             eeECCCCCccccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            4566432 234565 43  6899999999999974 55679999999999999999998889999999999999999999


Q ss_pred             CCCCccccCCccccH-HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          160 YSGGFLELGKTSLTN-LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       160 l~g~~~~~~~~~~p~-~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      +++         +|. .++++++|++|++++|.+++ ..|..+.++++|++|++++|++++
T Consensus        85 l~~---------l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~  135 (680)
T 1ziw_A           85 LSQ---------LSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSS  135 (680)
T ss_dssp             CCC---------CCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSC
T ss_pred             cCc---------cChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccc
Confidence            853         444 58899999999999999987 556789999999999999998864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1.7e-13  Score=104.24  Aligned_cols=108  Identities=19%  Similarity=0.207  Sum_probs=91.8

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCC-CCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANL-SRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l-~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p  173 (219)
                      +..+.+|++|++++|.++  .+|. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.++         .+|
T Consensus        15 ~~~~~~L~~L~l~~n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~---------~~~   80 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP--VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC---------RIG   80 (176)
T ss_dssp             EECTTSCEEEECTTSCCC--SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC---------EEC
T ss_pred             cCCcCCceEEEeeCCCCc--hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc---------ccC
Confidence            667889999999999998  3665 4444 4999999999999954  57889999999999999985         344


Q ss_pred             -HHHhcCCCCCEEeccCccCCCCCcCh--hhcCCCCCCEeeccccccc
Q 040237          174 -NLVQKLTNLETLNLGRVLIFNTPIPH--NLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       174 -~~l~~l~~L~~L~l~~N~l~~~~~p~--~l~~l~~L~~L~ls~N~l~  218 (219)
                       ..+..+++|++|++++|.+..  +|.  .+..+++|++|++++|+++
T Consensus        81 ~~~~~~l~~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           81 EGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             SCHHHHCTTCCEEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cchhhcCCCCCEEECCCCcCCc--chhhHhhhcCCCCCEEEecCCCCC
Confidence             445899999999999999955  776  8899999999999999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.47  E-value=1.3e-13  Score=120.19  Aligned_cols=121  Identities=21%  Similarity=0.247  Sum_probs=85.8

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCC
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG  163 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~  163 (219)
                      +.+.+..|. +.++++|++|++++|.++.  +|. .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++ 
T Consensus        66 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-  142 (477)
T 2id5_A           66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKL--IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-  142 (477)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCS--CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-
T ss_pred             CccCEeChhhhhCCccCCEEECCCCcCCc--cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce-
Confidence            344555555 8889999999999998884  454 57888999999999999887777788888888888888888743 


Q ss_pred             ccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       164 ~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                             ..+..+..+++|++|++++|.+++ ..+..+.++++|+.|++++|++
T Consensus       143 -------~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          143 -------ISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             -------ECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCC
T ss_pred             -------eChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcC
Confidence                   234445566666666666666655 3334455666666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.47  E-value=2.2e-13  Score=118.14  Aligned_cols=111  Identities=22%  Similarity=0.155  Sum_probs=69.8

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +.++++|++|++++|+++.  +| .+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++        ..+.
T Consensus       192 ~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~  260 (452)
T 3zyi_A          192 FEGLFNLKYLNLGMCNIKD--MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL--------IERN  260 (452)
T ss_dssp             TTTCTTCCEEECTTSCCSS--CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE--------ECTT
T ss_pred             ccCCCCCCEEECCCCcccc--cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce--------ECHH
Confidence            4445555555555555552  33 35556666666666666665556666666666666666666632        3345


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      .+..+++|++|++++|++++ ..+..+..+++|++|++++|++
T Consensus       261 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          261 AFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCSC-CCTTSSTTCTTCCEEECCSSCE
T ss_pred             HhcCCCCCCEEECCCCcCCc-cChHHhccccCCCEEEccCCCc
Confidence            56677777777777777766 4445566777777777777765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.46  E-value=4.5e-14  Score=116.73  Aligned_cols=114  Identities=16%  Similarity=0.106  Sum_probs=64.3

Q ss_pred             cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCC--Cch--hhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237           97 SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQ--IPS--EILELSNLVSLDLSGNGYSGGFLELGKTSL  172 (219)
Q Consensus        97 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~--lp~--~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~  172 (219)
                      .+++|++|++++|.+.+. .|..+..+++|++|++++|++.+.  ++.  .+..+++|++|++++|+++.      ....
T Consensus       143 ~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------l~~~  215 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET------PTGV  215 (310)
T ss_dssp             BCSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC------HHHH
T ss_pred             hccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc------hHHH
Confidence            344444444444444432 333444444444444444444321  111  11344444444444444421      0111


Q ss_pred             cH-HHhcCCCCCEEeccCccCCCCCcChhhcCC---CCCCEeeccccccc
Q 040237          173 TN-LVQKLTNLETLNLGRVLIFNTPIPHNLGNL---SSLRFLSLQNCLVQ  218 (219)
Q Consensus       173 p~-~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l---~~L~~L~ls~N~l~  218 (219)
                      +. .++.+++|++|++++|.+++ ..|..+..+   ++|++|++++|+++
T Consensus       216 ~~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          216 CAALAAAGVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             HHHHHHHTCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             HHHHHhcCCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCC
Confidence            22 25788999999999999988 668777776   69999999999886

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.45  E-value=5.4e-13  Score=108.02  Aligned_cols=107  Identities=20%  Similarity=0.304  Sum_probs=53.8

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch--------------------hhhcCCCCcEEE
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS--------------------EILELSNLVSLD  154 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~--------------------~~~~l~~L~~L~  154 (219)
                      +..+++|++|++++|.+++  +++ +..+++|++|++++|++++ +|.                    .+..+++|+.|+
T Consensus        59 l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~  134 (263)
T 1xeu_A           59 MQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILS  134 (263)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEE
T ss_pred             HhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCC-cCccccCcccEEEccCCccCCChhhcCcccccEEE
Confidence            4445555555555555552  333 4555555555555555542 222                    344555555555


Q ss_pred             ccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          155 LSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       155 Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +++|++++         ++ .+..+++|++|++++|.+++  + ..+..+++|++|++++|+++
T Consensus       135 Ls~N~i~~---------~~-~l~~l~~L~~L~L~~N~i~~--~-~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          135 IRNNKLKS---------IV-MLGFLSKLEVLDLHGNEITN--T-GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CTTSCCCB---------CG-GGGGCTTCCEEECTTSCCCB--C-TTSTTCCCCCEEEEEEEEEE
T ss_pred             CCCCcCCC---------Ch-HHccCCCCCEEECCCCcCcc--h-HHhccCCCCCEEeCCCCccc
Confidence            55555432         22 34555555555555555544  2 44555555666666555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.45  E-value=1.4e-13  Score=120.81  Aligned_cols=118  Identities=19%  Similarity=0.122  Sum_probs=80.6

Q ss_pred             Cccccccc-cccCCCCCEeecCCCCCCCCCCchhhc-CCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237           87 KVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIA-NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        87 ~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      .+++..|. +..+++|++|++++|.+.+. .|..+. .+++|++|++++|.+++. |. ...+++|+.|++++|.++   
T Consensus       131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~---  204 (487)
T 3oja_A          131 KITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA---  204 (487)
T ss_dssp             CCCSGGGBCGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC---
T ss_pred             CCCCCCchhhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCC---
Confidence            34444444 66666677777777766654 455554 566777777777766633 32 234667777777777764   


Q ss_pred             cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                            .+|..+..+++|+.|++++|.+++  +|..+..+++|+.|++++|+++
T Consensus       205 ------~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          205 ------FMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             ------EECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBC
T ss_pred             ------CCCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCc
Confidence                  355557788888888888888866  7877888888888888888775

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.44  E-value=2e-13  Score=127.08  Aligned_cols=122  Identities=23%  Similarity=0.252  Sum_probs=94.4

Q ss_pred             ccccccc--cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchh--hhcCCCCcEEEccCCCCCCC
Q 040237           88 VPSTLAA--AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSE--ILELSNLVSLDLSGNGYSGG  163 (219)
Q Consensus        88 l~g~lp~--l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~--~~~l~~L~~L~Ls~N~l~g~  163 (219)
                      ..+.+++  +.++++|++|++++|.+.+. .|..+.++++|++|++++|.+++.+|..  +..+++|++|++++|.+++.
T Consensus        60 ~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~  138 (844)
T 3j0a_A           60 TPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL  138 (844)
T ss_dssp             CCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred             CccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence            4566644  88999999999999999875 6888999999999999999998777665  88899999999999988642


Q ss_pred             ccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCC--CCCCEeeccccccc
Q 040237          164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNL--SSLRFLSLQNCLVQ  218 (219)
Q Consensus       164 ~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l--~~L~~L~ls~N~l~  218 (219)
                             ..+..++++++|++|++++|.+++ ..|..+..+  ++|+.|++++|.++
T Consensus       139 -------~~~~~~~~L~~L~~L~Ls~N~i~~-~~~~~l~~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          139 -------YLHPSFGKLNSLKSIDFSSNQIFL-VCEHELEPLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             -------CCCGGGGTCSSCCEEEEESSCCCC-CCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred             -------ccchhHhhCCCCCEEECCCCcCCe-eCHHHcccccCCccceEECCCCccc
Confidence                   234567888888888888888877 566666555  55666666665543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.44  E-value=1.2e-12  Score=108.16  Aligned_cols=107  Identities=27%  Similarity=0.387  Sum_probs=72.7

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|++|++++|.+.+  ++ .+..+++|++|++++|.+++ +|. +..+++|++|++++|.+++         ++.
T Consensus        81 ~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~---------~~~  146 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN---------ISP  146 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC---------CGG
T ss_pred             HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc---------Ccc
Confidence            5666666777777766663  33 46666777777777777663 443 6667777777777776643         222


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                       ++.+++|++|++++|.+++  ++. +..+++|++|++++|++++
T Consensus       147 -l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          147 -LAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             -GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             -ccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCccCc
Confidence             6777888888888888866  444 7788888888888887753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.44  E-value=1.2e-13  Score=115.94  Aligned_cols=122  Identities=18%  Similarity=0.123  Sum_probs=92.1

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCch--hhhcCCCCcEEEccCCCCC
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPS--EILELSNLVSLDLSGNGYS  161 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~--~~~~l~~L~~L~Ls~N~l~  161 (219)
                      +.+++..+. +..+++|++|++++|.++.  +|. .+..+++|++|++++|.++ .+|.  .+..+++|++|++++|...
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A           86 NGINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             CccCccCHhhcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccc
Confidence            445555555 8899999999999999985  555 4899999999999999998 5665  6888999999999999532


Q ss_pred             CCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          162 GGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       162 g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +       ...+..++.+++|++|++++|.+++ ..|..+..+++|++|++++|+++
T Consensus       163 ~-------~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          163 T-------KIQRKDFAGLTFLEELEIDASDLQS-YEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             C-------EECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTTCSEEEEEEEECSCST
T ss_pred             c-------ccCHHHccCCCCCCEEECCCCCcCc-cCHHHHhccccCCeecCCCCccc
Confidence            1       1224556777777777777777766 55667777777777777766653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.44  E-value=1.6e-12  Score=107.45  Aligned_cols=108  Identities=29%  Similarity=0.347  Sum_probs=65.4

Q ss_pred             ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcc
Q 040237           92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTS  171 (219)
Q Consensus        92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~  171 (219)
                      ++.+..+++|++|++++|.+++  ++. +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++         
T Consensus       100 ~~~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~---------  165 (308)
T 1h6u_A          100 VSAIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD---------  165 (308)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC---------
T ss_pred             chhhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC---------
Confidence            3447777788888888888774  443 7777777777777777773 333 6677777777777777653         


Q ss_pred             ccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       172 ~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      ++. +..+++|++|++++|.+++  ++. +..+++|++|++++|++
T Consensus       166 ~~~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          166 LTP-LANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             CGG-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCC
T ss_pred             Chh-hcCCCCCCEEECCCCccCc--Chh-hcCCCCCCEEEccCCcc
Confidence            122 4445555555555555543  222 44444455555554444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.44  E-value=5.2e-13  Score=119.37  Aligned_cols=113  Identities=22%  Similarity=0.218  Sum_probs=96.6

Q ss_pred             CCccccccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 040237           86 SKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFL  165 (219)
Q Consensus        86 ~~l~g~lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~  165 (219)
                      +.+++ +|.+..+++|++|++++|.++  .+|..+..+++|++|++++|.+++ +| .++.+++|+.|++++|.+++   
T Consensus       451 n~l~~-lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~---  522 (567)
T 1dce_A          451 KDLTV-LCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ---  522 (567)
T ss_dssp             SCCSS-CCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS---
T ss_pred             CCCCC-CcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCC---
Confidence            34554 666899999999999999999  499999999999999999999995 78 89999999999999999964   


Q ss_pred             ccCCccc-cHHHhcCCCCCEEeccCccCCCCCcCh---hhcCCCCCCEeec
Q 040237          166 ELGKTSL-TNLVQKLTNLETLNLGRVLIFNTPIPH---NLGNLSSLRFLSL  212 (219)
Q Consensus       166 ~~~~~~~-p~~l~~l~~L~~L~l~~N~l~~~~~p~---~l~~l~~L~~L~l  212 (219)
                           .. |..++.+++|+.|++++|.+++ ..|.   .+..+++|+.|++
T Consensus       523 -----~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          523 -----SAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -----SSTTGGGGGCTTCCEEECTTSGGGG-SSSCTTHHHHHCTTCSEEEC
T ss_pred             -----CCCcHHHhcCCCCCEEEecCCcCCC-CccHHHHHHHHCcccCccCC
Confidence                 33 7889999999999999999987 4332   2345899999874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.43  E-value=1.6e-12  Score=106.60  Aligned_cols=106  Identities=25%  Similarity=0.319  Sum_probs=70.3

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|++|++++|.+..  +| .+..+++|++|++++|.+++ + +.+..+++|+.|++++|.+++         + .
T Consensus        86 l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~---------~-~  150 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD---------I-T  150 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC---------C-G
T ss_pred             cccCCCCCEEECCCCcCCC--Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc---------c-h
Confidence            5566666666666666652  33 36666666666666666663 3 345666667777777666642         2 4


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      .+..+++|++|++++|.+++  ++. +..+++|++|++++|+++
T Consensus       151 ~l~~l~~L~~L~L~~N~l~~--~~~-l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          151 VLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             GGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC
T ss_pred             hhccCCCCCEEEccCCcccc--chh-hcCCCccCEEECCCCcCC
Confidence            56777888888888888866  333 777888888888888775

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.43  E-value=3.7e-13  Score=119.71  Aligned_cols=132  Identities=17%  Similarity=0.212  Sum_probs=93.4

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCC-CCchhhcCCCCCCEEEcccCCCCCCCchh-hhcCCCCcEEEccCCCCCC
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYP-EIPPEIANLSRLSYLNLSDSFFTGQIPSE-ILELSNLVSLDLSGNGYSG  162 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~-~~~l~~L~~L~Ls~N~l~g  162 (219)
                      +.+.+.+|. +..+++|++|++++|.+++. .+|..+..+++|++|++++|.+++.+|.. +..+++|++|++++|.+++
T Consensus       363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  442 (562)
T 3a79_B          363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG  442 (562)
T ss_dssp             SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred             CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence            455666666 78888888888888888742 02355778888888888888888656653 5667777777777777765


Q ss_pred             CccccC-------------CccccHHHhcCCCCCEEeccCccCCCCCcChh-hcCCCCCCEeecccccccC
Q 040237          163 GFLELG-------------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       163 ~~~~~~-------------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~-l~~l~~L~~L~ls~N~l~G  219 (219)
                      .+|..-             ...+|..+..+++|++|++++|+++.  +|.. +..+++|++|++++|++++
T Consensus       443 ~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          443 SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS--VPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             GGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC--CCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             chhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC--CCHHHHhcCCCCCEEEecCCCcCC
Confidence            433110             12466666677888888888888865  6655 7788888888888888764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.43  E-value=1.1e-12  Score=99.51  Aligned_cols=106  Identities=20%  Similarity=0.176  Sum_probs=88.6

Q ss_pred             CCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCC
Q 040237          101 ILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLT  180 (219)
Q Consensus       101 L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~  180 (219)
                      .+.+++++++++  .+|..+  .++|++|++++|++++..+..+..+++|++|++++|.+++        ..+..+..++
T Consensus         9 ~~~l~~~~~~l~--~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~   76 (177)
T 2o6r_A            9 GTEIRCNSKGLT--SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--------LPDGVFDKLT   76 (177)
T ss_dssp             TTEEECCSSCCS--SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--------CCTTTTTTCT
T ss_pred             CCEEEecCCCCc--cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--------eChhHccCCC
Confidence            578999999988  477654  3799999999999996555567899999999999999853        2334568899


Q ss_pred             CCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          181 NLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       181 ~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      +|++|++++|.+++ ..+..+..+++|++|++++|++++
T Consensus        77 ~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~  114 (177)
T 2o6r_A           77 KLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKS  114 (177)
T ss_dssp             TCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccCEEECCCCCccc-cCHHHhhCCcccCEEECcCCcceE
Confidence            99999999999988 555668899999999999999864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.43  E-value=2.6e-13  Score=112.46  Aligned_cols=110  Identities=19%  Similarity=0.145  Sum_probs=75.3

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhh-cCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l-~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p  173 (219)
                      +..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++ +|. ...+++|++|++++|.++         .+|
T Consensus       140 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~---------~l~  207 (317)
T 3o53_A          140 EGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLA---------FMG  207 (317)
T ss_dssp             TGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCC---------EEC
T ss_pred             hhccCCCCEEECCCCCCCcc-cHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcCC---------cch
Confidence            55566666666666666643 33333 356666666666666652 232 224666777777777663         355


Q ss_pred             HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      ..+..+++|++|++++|.+++  +|..+..+++|++|++++|+++
T Consensus       208 ~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          208 PEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCB
T ss_pred             hhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCcc
Confidence            668888899999999998865  7888888899999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.43  E-value=8.1e-13  Score=118.56  Aligned_cols=119  Identities=19%  Similarity=0.194  Sum_probs=93.4

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCCCCC
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGYSGG  163 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~g~  163 (219)
                      +.+.+..|. +..+++|++|++++|.+.+. .|..+..+++|++|++++|.++ .+|. .++.+++|++|++++|.+++ 
T Consensus        85 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~-  161 (597)
T 3oja_B           85 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-  161 (597)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB-
T ss_pred             CCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC-
Confidence            445555554 89999999999999999975 6667899999999999999999 5555 46899999999999999854 


Q ss_pred             ccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       164 ~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                             ..|..++.+++|++|++++|.+++  ++  +..+++|++|++++|.++
T Consensus       162 -------~~~~~~~~l~~L~~L~L~~N~l~~--~~--~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          162 -------IEDDTFQATTSLQNLQLSSNRLTH--VD--LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             -------CCTTTTTTCTTCCEEECTTSCCSB--CC--GGGCTTCSEEECCSSCCS
T ss_pred             -------CChhhhhcCCcCcEEECcCCCCCC--cC--hhhhhhhhhhhcccCccc
Confidence                   455678889999999999999976  33  344556666555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.42  E-value=6.1e-13  Score=110.76  Aligned_cols=127  Identities=13%  Similarity=0.066  Sum_probs=80.8

Q ss_pred             CcccccCCCCCCCc-cccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcE
Q 040237           75 KVASWKQGEAASKV-PSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS  152 (219)
Q Consensus        75 ~~~~W~~~~~c~~l-~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~  152 (219)
                      +.|.|. ...|.+. -..+|. +  .+++++|++++|.+... .|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus        31 c~c~l~-~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  106 (332)
T 2ft3_A           31 CHCHLR-VVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK  106 (332)
T ss_dssp             CEEETT-EEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred             CcccCC-EEECCCCCccccCCCC--CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence            445666 4555321 224454 3  25788888888888753 4557788888888888888888666777888888888


Q ss_pred             EEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          153 LDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       153 L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      |++++|.++.         +|..+.  ++|++|++++|.+.+ ..+..+.++++|++|++++|++
T Consensus       107 L~L~~n~l~~---------l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          107 LYISKNHLVE---------IPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             EECCSSCCCS---------CCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCC
T ss_pred             EECCCCcCCc---------cCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCcc
Confidence            8888887752         222222  456666666666654 3334455666666666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.42  E-value=2.1e-12  Score=105.95  Aligned_cols=108  Identities=24%  Similarity=0.274  Sum_probs=66.5

Q ss_pred             cccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237           93 AAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSL  172 (219)
Q Consensus        93 p~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~  172 (219)
                      +.+..+++|++|++++|.+..  + +.+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++         +
T Consensus       106 ~~l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~---------~  171 (291)
T 1h6t_A          106 SSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD---------I  171 (291)
T ss_dssp             GGGTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC---------C
T ss_pred             hhhccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc---------c
Confidence            336666666677776666663  3 3466666666777766666632  456666667777776666643         2


Q ss_pred             cHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          173 TNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       173 p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +. +..+++|++|++++|.+++  +|. +..+++|+.|++++|+++
T Consensus       172 ~~-l~~l~~L~~L~L~~N~i~~--l~~-l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          172 VP-LAGLTKLQNLYLSKNHISD--LRA-LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             GG-GTTCTTCCEEECCSSCCCB--CGG-GTTCTTCSEEEEEEEEEE
T ss_pred             hh-hcCCCccCEEECCCCcCCC--Chh-hccCCCCCEEECcCCccc
Confidence            22 5666666677776666654  332 666666666666666653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.41  E-value=1.8e-13  Score=108.77  Aligned_cols=111  Identities=15%  Similarity=0.112  Sum_probs=57.9

Q ss_pred             cccCCCCCEeecCCCC-CCCCCCchhhcCCCCCCEEEccc-CCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237           95 AFSILSILSGNLAGND-FRYPEIPPEIANLSRLSYLNLSD-SFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSL  172 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~-n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~  172 (219)
                      +..+++|++|++++|. ++.. .+..+..+++|++|++++ |.+++..+..+..+++|++|++++|.+++         +
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~---------l  120 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM---------F  120 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS---------C
T ss_pred             ccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc---------c
Confidence            5556666666666665 5431 223456666666666665 66663333455566666666666666543         2


Q ss_pred             cHHHhcCCCCC---EEeccCc-cCCCCCcChhhcCCCCCC-Eeecccccc
Q 040237          173 TNLVQKLTNLE---TLNLGRV-LIFNTPIPHNLGNLSSLR-FLSLQNCLV  217 (219)
Q Consensus       173 p~~l~~l~~L~---~L~l~~N-~l~~~~~p~~l~~l~~L~-~L~ls~N~l  217 (219)
                      |. +..+++|+   +|++++| .+++ ..+..+..+++|+ +|++++|++
T Consensus       121 p~-~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C          121 PD-LTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             CC-CTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSCCC
T ss_pred             cc-cccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCCCC
Confidence            22 33444444   5555555 4433 2223344455555 555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.41  E-value=2.2e-13  Score=108.26  Aligned_cols=120  Identities=13%  Similarity=0.138  Sum_probs=97.0

Q ss_pred             CCCCccccccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCC-CCCCCchhhhcCCCCcEEEccC-CCCC
Q 040237           84 AASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSF-FTGQIPSEILELSNLVSLDLSG-NGYS  161 (219)
Q Consensus        84 ~c~~l~g~lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~g~lp~~~~~l~~L~~L~Ls~-N~l~  161 (219)
                      .|.+ -..+|.  -..++++|++++|++++. .+..+..+++|++|++++|+ ++...+..+..+++|++|++++ |.++
T Consensus        19 ~c~~-l~~ip~--~~~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~   94 (239)
T 2xwt_C           19 TCKD-IQRIPS--LPPSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT   94 (239)
T ss_dssp             EECS-CSSCCC--CCTTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred             EccC-ccccCC--CCCcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence            4876 344565  334899999999999953 34478999999999999997 8744445789999999999998 9884


Q ss_pred             CCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCC---Eeecccc-ccc
Q 040237          162 GGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLR---FLSLQNC-LVQ  218 (219)
Q Consensus       162 g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~---~L~ls~N-~l~  218 (219)
                      +        ..+..+..+++|++|++++|.+++  +|. +..+++|+   +|++++| +++
T Consensus        95 ~--------i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~  144 (239)
T 2xwt_C           95 Y--------IDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMT  144 (239)
T ss_dssp             E--------ECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred             E--------cCHHHhCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchh
Confidence            2        223567889999999999999976  776 88888888   9999999 764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.41  E-value=4e-14  Score=129.99  Aligned_cols=99  Identities=27%  Similarity=0.290  Sum_probs=90.3

Q ss_pred             cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCC
Q 040237           91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGK  169 (219)
Q Consensus        91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~  169 (219)
                      .+|+ +..+++|++|+|++|.++  .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++        
T Consensus       238 ~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~--------  306 (727)
T 4b8c_D          238 NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT--------  306 (727)
T ss_dssp             CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC--------
T ss_pred             CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC--------
Confidence            6776 779999999999999999  49999999999999999999999 89999999999999999999984        


Q ss_pred             ccccHHHhcCCCCCEEeccCccCCCCCcChhhc
Q 040237          170 TSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLG  202 (219)
Q Consensus       170 ~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~  202 (219)
                       .+|..++++++|++|+|++|.+++ .+|..+.
T Consensus       307 -~lp~~~~~l~~L~~L~L~~N~l~~-~~p~~~~  337 (727)
T 4b8c_D          307 -TLPWEFGNLCNLQFLGVEGNPLEK-QFLKILT  337 (727)
T ss_dssp             -CCCSSTTSCTTCCCEECTTSCCCS-HHHHHHH
T ss_pred             -ccChhhhcCCCccEEeCCCCccCC-CChHHHh
Confidence             577789999999999999999998 7776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.41  E-value=2.3e-13  Score=112.37  Aligned_cols=120  Identities=18%  Similarity=0.147  Sum_probs=76.0

Q ss_pred             Cccccccc-cccCCCCCEeecCCCCCCCC-CCc--hhhcCCCCCCEEEcccCCCCCCCch----hhhcCCCCcEEEccCC
Q 040237           87 KVPSTLAA-AFSILSILSGNLAGNDFRYP-EIP--PEIANLSRLSYLNLSDSFFTGQIPS----EILELSNLVSLDLSGN  158 (219)
Q Consensus        87 ~l~g~lp~-l~~l~~L~~L~L~~n~l~~~-~~p--~~l~~l~~L~~L~Ls~n~l~g~lp~----~~~~l~~L~~L~Ls~N  158 (219)
                      .+.+..+. +..+++|++|++++|++.+. .++  ..+..+++|++|++++|+++ .+|.    .+..+++|++|++++|
T Consensus       156 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          156 HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTS
T ss_pred             CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCC
Confidence            34444444 67777788888887776531 011  22356777777888887776 3333    2466777888888888


Q ss_pred             CCCCCccccCCccccHHHhcC---CCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          159 GYSGGFLELGKTSLTNLVQKL---TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       159 ~l~g~~~~~~~~~~p~~l~~l---~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      .+++        ..|..+..+   ++|++|++++|+++.  +|..+.  ++|++|++++|+++|
T Consensus       235 ~l~~--------~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          235 SLRA--------TVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             CCCC--------CCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCCC--SCCSCEECCSCCCCS
T ss_pred             CCCc--------cchhhHHhccCcCcCCEEECCCCCCCc--hhhhhc--CCCCEEECCCCcCCC
Confidence            7754        234444444   577788888777754  666553  677778888777764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=5.2e-15  Score=114.72  Aligned_cols=111  Identities=23%  Similarity=0.220  Sum_probs=95.3

Q ss_pred             ccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCc
Q 040237           92 LAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT  170 (219)
Q Consensus        92 lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~  170 (219)
                      +|. +..+++|++|++++|.+.+  +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++        
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~--------  107 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS--------  107 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC--------
T ss_pred             hhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc--------
Confidence            344 7889999999999999984  67 8889999999999999998 788888888999999999999853        


Q ss_pred             cccHHHhcCCCCCEEeccCccCCCCCcC--hhhcCCCCCCEeeccccccc
Q 040237          171 SLTNLVQKLTNLETLNLGRVLIFNTPIP--HNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       171 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~l~~l~~L~~L~ls~N~l~  218 (219)
                       +| .+..+++|++|++++|.+++  ++  ..+..+++|++|++++|+++
T Consensus       108 -l~-~~~~l~~L~~L~l~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          108 -LS-GIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             -HH-HHHHHHHSSEEEESEEECCC--HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             -CC-ccccCCCCCEEECCCCcCCc--hhHHHHHhcCCCCCEEEecCCccc
Confidence             44 57888999999999999976  44  47888999999999999874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.41  E-value=1e-12  Score=109.98  Aligned_cols=107  Identities=18%  Similarity=0.109  Sum_probs=62.1

Q ss_pred             cccccCCCCCCCc--cccccccccCCCCCEeecCC-CCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcE
Q 040237           76 VASWKQGEAASKV--PSTLAAAFSILSILSGNLAG-NDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS  152 (219)
Q Consensus        76 ~~~W~~~~~c~~l--~g~lp~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~  152 (219)
                      .|+|. .++|.+.  -..+|.+..+++|++|+|++ |.+.+. .+..+..+++|++|+|++|++++..|..|..+++|+.
T Consensus         7 ~C~~~-~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~   84 (347)
T 2ifg_A            7 PHGSS-GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (347)
T ss_dssp             CSSSS-CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             cccCC-EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence            45665 4555321  12244455666677777764 666643 3345666777777777777776655556666677777


Q ss_pred             EEccCCCCCCCccccCCccccH-HHhcCCCCCEEeccCccCCC
Q 040237          153 LDLSGNGYSGGFLELGKTSLTN-LVQKLTNLETLNLGRVLIFN  194 (219)
Q Consensus       153 L~Ls~N~l~g~~~~~~~~~~p~-~l~~l~~L~~L~l~~N~l~~  194 (219)
                      |+|++|++++         +|. .+..++ |+.|++.+|.+..
T Consensus        85 L~l~~N~l~~---------~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           85 LNLSFNALES---------LSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             EECCSSCCSC---------CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             EeCCCCccce---------eCHHHcccCC-ceEEEeeCCCccC
Confidence            7777776643         222 223333 6667776666643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.40  E-value=1.8e-12  Score=110.15  Aligned_cols=117  Identities=20%  Similarity=0.208  Sum_probs=89.3

Q ss_pred             Cccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchh-hhcCCCCcEEEccCCCCCCCc
Q 040237           87 KVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSE-ILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        87 ~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~-~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      .+.+..+. +..+++|++|++++|.+.+. .|..+..+++|++|++++|.++ .+|.. +..+++|++|++++|.+++  
T Consensus        80 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~--  155 (390)
T 3o6n_A           80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER--  155 (390)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB--
T ss_pred             cccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCc--
Confidence            34444444 88999999999999999864 5667899999999999999998 66655 5889999999999999853  


Q ss_pred             cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                            ..+..++.+++|++|++++|.+++  ++  +..+++|++|++++|.+
T Consensus       156 ------~~~~~~~~l~~L~~L~l~~n~l~~--~~--~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          156 ------IEDDTFQATTSLQNLQLSSNRLTH--VD--LSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             ------CCTTTTSSCTTCCEEECCSSCCSB--CC--GGGCTTCSEEECCSSCC
T ss_pred             ------cChhhccCCCCCCEEECCCCcCCc--cc--cccccccceeecccccc
Confidence                  345567888999999999999876  32  34455555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.40  E-value=1.1e-12  Score=106.20  Aligned_cols=118  Identities=19%  Similarity=0.246  Sum_probs=91.4

Q ss_pred             ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC---
Q 040237           92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG---  168 (219)
Q Consensus        92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~---  168 (219)
                      ++.+..+++|++|++++|.+.  .+| .+..+++|++|++++|.++ .+|. +..+++|++|++++|++++. +...   
T Consensus        34 ~~~~~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~l-~~~~~~~  107 (263)
T 1xeu_A           34 LVSQKELSGVQNFNGDNSNIQ--SLA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNL-NGIPSAC  107 (263)
T ss_dssp             EECHHHHTTCSEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSCC-TTCCCSS
T ss_pred             ccchhhcCcCcEEECcCCCcc--cch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCCc-CccccCc
Confidence            335677899999999999998  466 7899999999999999999 4555 89999999999999998762 2111   


Q ss_pred             ----------CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          169 ----------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       169 ----------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                                ...+ +.+..+++|++|++++|++++  ++ .+..+++|++|++++|++++
T Consensus       108 L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          108 LSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCB
T ss_pred             ccEEEccCCccCCC-hhhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcc
Confidence                      0112 246777888888888888866  44 57778888888888887753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.40  E-value=3.4e-12  Score=106.50  Aligned_cols=108  Identities=25%  Similarity=0.303  Sum_probs=59.8

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|++|++++|.+..  + +.+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++        ...+.
T Consensus       239 ~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~--------~~~~~  305 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLG--------NEDME  305 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCC--------GGGHH
T ss_pred             hhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCC--------CcChh
Confidence            3444445555555544442  2 234455555555555555542 22 3455555555555555552        24456


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      .++.+++|++|++++|.+++ ..|  +..+++|++|++++|+|+
T Consensus       306 ~l~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQNHITD-IRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHHTCTTCSEEECCSSSCCC-CGG--GGGCTTCSEESSSCC---
T ss_pred             HhhccccCCEEEccCCcccc-ccC--hhhhhccceeehhhhccc
Confidence            67777777777777777766 333  667777777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.39  E-value=1.4e-12  Score=108.53  Aligned_cols=120  Identities=18%  Similarity=0.254  Sum_probs=86.0

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      +.+.+..+. +..+++|++|++++|.+++. .|..+..+++|++|++++|.+. .+|..+.  ++|++|++++|.+++  
T Consensus        64 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~--  137 (332)
T 2ft3_A           64 NDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK--  137 (332)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC--
T ss_pred             CcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc--
Confidence            344444454 88899999999999998864 6788899999999999999988 6776654  788888998888753  


Q ss_pred             cccCCccccHHHhcCCCCCEEeccCccCCC-CCcChhhcCCCCCCEeeccccccc
Q 040237          165 LELGKTSLTNLVQKLTNLETLNLGRVLIFN-TPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~-~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                            ..+..+..+++|++|++++|.++. ...|..+..+ +|++|++++|+++
T Consensus       138 ------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          138 ------VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             ------CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             ------cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence                  223456778888888888887742 0344555555 5666666655543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.38  E-value=3.8e-13  Score=118.08  Aligned_cols=109  Identities=18%  Similarity=0.106  Sum_probs=79.0

Q ss_pred             CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhh-cCCCCcEEEccCCCCCCCccccCCccccHHH
Q 040237           98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEIL-ELSNLVSLDLSGNGYSGGFLELGKTSLTNLV  176 (219)
Q Consensus        98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~-~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l  176 (219)
                      +++|++|++++|.+.+. .|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++         +|. .
T Consensus       119 l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~---------~~~-~  187 (487)
T 3oja_A          119 GQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---------VKG-Q  187 (487)
T ss_dssp             CSSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE---------EEC-C
T ss_pred             cCCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc---------ccc-c
Confidence            35566666666666653 455677777777777777777766666665 67777888887777753         222 2


Q ss_pred             hcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          177 QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       177 ~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      ..+++|++|++++|.+++  +|..+..+++|+.|++++|++++
T Consensus       188 ~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          188 VVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             CCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCE
T ss_pred             ccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcc
Confidence            357888999999998876  66668888999999999998763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.37  E-value=2.3e-12  Score=97.58  Aligned_cols=105  Identities=25%  Similarity=0.250  Sum_probs=90.6

Q ss_pred             CCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCC
Q 040237          101 ILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLT  180 (219)
Q Consensus       101 L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~  180 (219)
                      .+++++++|.++  .+|..+.  +++++|++++|.+++..|..+..+++|++|++++|++++        ..+..+..++
T Consensus        11 ~~~l~~s~n~l~--~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------l~~~~f~~l~   78 (170)
T 3g39_A           11 GTTVDCSGKSLA--SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--------LPAGVFDKLT   78 (170)
T ss_dssp             TTEEECTTSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--------CCTTTTTTCT
T ss_pred             CCEEEeCCCCcC--ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--------cChhhccCCC
Confidence            467999999998  4787664  899999999999997778889999999999999999964        2334568899


Q ss_pred             CCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          181 NLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       181 ~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +|++|++++|++++ ..+..+..+++|++|++++|+++
T Consensus        79 ~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           79 QLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             TCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCEEECCCCccCE-eCHHHhcCCCCCCEEEeCCCCCC
Confidence            99999999999987 44557999999999999999886

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.36  E-value=4.9e-12  Score=105.57  Aligned_cols=109  Identities=23%  Similarity=0.364  Sum_probs=85.0

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|++|++++|.+..  ++. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++         + +
T Consensus       217 ~~~~~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~---------~-~  281 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITD--LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD---------I-S  281 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC---------C-G
T ss_pred             hhcCCcCCEEEccCCccCC--Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC---------C-h
Confidence            5667777778887777774  444 7777888888888887773 3 357777888888888887743         2 3


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      .+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++
T Consensus       282 ~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          282 VLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             GGGGCTTCSEEECCSSCCCG-GGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             hhcCCCCCCEEECcCCcCCC-cChhHhhccccCCEEEccCCcccc
Confidence            47788999999999999987 677889999999999999998864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.36  E-value=6.3e-12  Score=113.12  Aligned_cols=107  Identities=24%  Similarity=0.342  Sum_probs=76.4

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|+.|+|++|.+.+  +| .+..+++|++|++++|.+.+ + +.+..+++|+.|++++|.+++         + .
T Consensus        83 l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~---------l-~  147 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD---------I-T  147 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC---------C-G
T ss_pred             hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC---------c-h
Confidence            6666777777777777663  33 56677777777777777763 3 346677777777777777643         2 4


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      .+..+++|+.|+|++|.+.+ ..|  +..+++|++|++++|+|++
T Consensus       148 ~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          148 VLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             GGGSCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCB
T ss_pred             hhcccCCCCEEECcCCcCCC-chh--hccCCCCCEEECcCCCCCC
Confidence            57788888888888888877 434  7888888888888888763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.35  E-value=7.5e-12  Score=112.62  Aligned_cols=109  Identities=25%  Similarity=0.280  Sum_probs=77.3

Q ss_pred             ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcc
Q 040237           92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTS  171 (219)
Q Consensus        92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~  171 (219)
                      ++.+..+++|++|++++|.+..  + +.+..+++|+.|++++|.+++.  ..+..+++|+.|+|++|.+++        .
T Consensus       102 l~~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~--------~  168 (605)
T 1m9s_A          102 LSSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD--------I  168 (605)
T ss_dssp             CTTSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC--------C
T ss_pred             ChhhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC--------c
Confidence            3446777778888888887773  3 3477777888888888877743  467777788888888887753        2


Q ss_pred             ccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       172 ~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      .|  +..+++|+.|+|++|.+++  +| .+..+++|+.|++++|+++
T Consensus       169 ~~--l~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          169 VP--LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEECCSEEEE
T ss_pred             hh--hccCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEccCCcCc
Confidence            22  6777778888888887765  33 4777778888888777764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.34  E-value=2.2e-13  Score=113.15  Aligned_cols=117  Identities=21%  Similarity=0.233  Sum_probs=77.7

Q ss_pred             ccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccC-CCCCC-CchhhhcCCCCcEEEccCC-CCCCCcccc
Q 040237           92 LAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDS-FFTGQ-IPSEILELSNLVSLDLSGN-GYSGGFLEL  167 (219)
Q Consensus        92 lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~g~-lp~~~~~l~~L~~L~Ls~N-~l~g~~~~~  167 (219)
                      ++. +..+++|++|++++|.+.+. .+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++     
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-----  183 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE-----  183 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH-----
T ss_pred             HHHHHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh-----
Confidence            444 66677777777777766653 5666667777777777777 55542 5555666777777777777 6632     


Q ss_pred             CCccccHHHhcCC-CCCEEeccCc--cCCCCCcChhhcCCCCCCEeeccccc
Q 040237          168 GKTSLTNLVQKLT-NLETLNLGRV--LIFNTPIPHNLGNLSSLRFLSLQNCL  216 (219)
Q Consensus       168 ~~~~~p~~l~~l~-~L~~L~l~~N--~l~~~~~p~~l~~l~~L~~L~ls~N~  216 (219)
                        ..++..+..++ +|++|++++|  .+++..+|..+.++++|++|++++|.
T Consensus       184 --~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          184 --KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             --HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             --HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence              12566677777 7888888777  45421466666777788888887776

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.34  E-value=4.8e-12  Score=110.22  Aligned_cols=107  Identities=17%  Similarity=0.203  Sum_probs=83.3

Q ss_pred             CccccccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccc
Q 040237           87 KVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLE  166 (219)
Q Consensus        87 ~l~g~lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~  166 (219)
                      .+++ +|.+..+++|++|++++|.+++  +|  +..+++|++|++++|.+++ +|  ++.+++|++|++++|.+++    
T Consensus        53 ~l~~-~~~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~----  120 (457)
T 3bz5_A           53 SITD-MTGIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK----  120 (457)
T ss_dssp             CCCC-CTTGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC----
T ss_pred             Cccc-ChhhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe----
Confidence            3444 3557788888888888888885  44  7788888888888888885 44  7788888888888888753    


Q ss_pred             cCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccc
Q 040237          167 LGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCL  216 (219)
Q Consensus       167 ~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~  216 (219)
                           ++  ++.+++|++|++++|.+++  ++  ++++++|++|++++|+
T Consensus       121 -----l~--~~~l~~L~~L~l~~N~l~~--l~--l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          121 -----LD--VSQNPLLTYLNCARNTLTE--ID--VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             -----CC--CTTCTTCCEEECTTSCCSC--CC--CTTCTTCCEEECTTCS
T ss_pred             -----ec--CCCCCcCCEEECCCCccce--ec--cccCCcCCEEECCCCC
Confidence                 33  6778888889998888877  43  7788888888888884

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.32  E-value=1.5e-12  Score=107.92  Aligned_cols=108  Identities=19%  Similarity=0.120  Sum_probs=78.1

Q ss_pred             CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhh-hcCCCCcEEEccCCCCCCCccccCCccccHHH
Q 040237           98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEI-LELSNLVSLDLSGNGYSGGFLELGKTSLTNLV  176 (219)
Q Consensus        98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~-~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l  176 (219)
                      +++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++         ++. .
T Consensus       119 ~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~---------~~~-~  187 (317)
T 3o53_A          119 GQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---------VKG-Q  187 (317)
T ss_dssp             CSSCEEEECCSSCCCSG-GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE---------EEC-C
T ss_pred             cCCCCEEECCCCCCCCc-cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc---------ccc-c
Confidence            45566667777776643 34466777788888888888776555555 367788888888887743         222 2


Q ss_pred             hcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          177 QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       177 ~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      ..+++|++|++++|.+++  +|..+..+++|++|++++|+++
T Consensus       188 ~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          188 VVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             CCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCC
T ss_pred             cccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCccc
Confidence            347889999999999866  6777888999999999999875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.31  E-value=1.4e-11  Score=107.23  Aligned_cols=115  Identities=25%  Similarity=0.284  Sum_probs=63.1

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC------
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG------  168 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~------  168 (219)
                      +..+++|++|++++|.+.+  ++. +..+++|++|++++|++.+. +. +..+++|+.|++++|.+++..+-..      
T Consensus       261 ~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~  335 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISN--ISP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQR  335 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCE
T ss_pred             hhcCCCCCEEECCCCccCc--ccc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchhhccCccCCE
Confidence            5566666666666666663  333 55666666666666666632 22 5556666666666666544211000      


Q ss_pred             -------CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          169 -------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       169 -------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                             ...+ ..+..+++|++|++++|.+++ ..|  +..+++|++|++++|+++
T Consensus       336 L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          336 LFFYNNKVSDV-SSLANLTNINWLSAGHNQISD-LTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             EECCSSCCCCC-GGGTTCTTCCEEECCSSCCCB-CGG--GTTCTTCCEEECCCEEEE
T ss_pred             eECCCCccCCc-hhhccCCCCCEEeCCCCccCc-cch--hhcCCCCCEEeccCCccc
Confidence                   0011 235556666666666666655 333  556666666666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.30  E-value=1e-12  Score=109.21  Aligned_cols=122  Identities=27%  Similarity=0.376  Sum_probs=94.6

Q ss_pred             Cccccccc-cccCCCCCEeecCCC-CCCCCCCchhhcCCCCCCEEEcccC-CCCCC-CchhhhcCC-CCcEEEccCC--C
Q 040237           87 KVPSTLAA-AFSILSILSGNLAGN-DFRYPEIPPEIANLSRLSYLNLSDS-FFTGQ-IPSEILELS-NLVSLDLSGN--G  159 (219)
Q Consensus        87 ~l~g~lp~-l~~l~~L~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~g~-lp~~~~~l~-~L~~L~Ls~N--~  159 (219)
                      .+++..+. +..+++|++|++++| .+++..++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .
T Consensus       129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~  208 (336)
T 2ast_B          129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN  208 (336)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence            34555565 788999999999999 6764225667888999999999999 88754 577788888 9999999998  4


Q ss_pred             CCCCccccCCccccHHHhcCCCCCEEeccCcc-CCCCCcChhhcCCCCCCEeeccccc
Q 040237          160 YSGGFLELGKTSLTNLVQKLTNLETLNLGRVL-IFNTPIPHNLGNLSSLRFLSLQNCL  216 (219)
Q Consensus       160 l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~-l~~~~~p~~l~~l~~L~~L~ls~N~  216 (219)
                      ++       ...++..+.++++|++|++++|. +++ ..+..+.++++|++|++++|.
T Consensus       209 ~~-------~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          209 LQ-------KSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             SC-------HHHHHHHHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTCT
T ss_pred             CC-------HHHHHHHHhhCCCCCEEeCCCCCcCCH-HHHHHHhCCCCCCEeeCCCCC
Confidence            43       23567777888888888888888 666 566778888888888888873

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=1.4e-11  Score=93.61  Aligned_cols=101  Identities=17%  Similarity=0.082  Sum_probs=82.2

Q ss_pred             CCCCCC-ccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCC
Q 040237           82 GEAASK-VPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG  159 (219)
Q Consensus        82 ~~~c~~-l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~  159 (219)
                      ..+|.+ .-+.+|. +.  ++|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus        16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCCCccCCCcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            345532 3456776 53  8999999999999975 67789999999999999999995444456899999999999999


Q ss_pred             CCCCccccCCcccc-HHHhcCCCCCEEeccCccCCC
Q 040237          160 YSGGFLELGKTSLT-NLVQKLTNLETLNLGRVLIFN  194 (219)
Q Consensus       160 l~g~~~~~~~~~~p-~~l~~l~~L~~L~l~~N~l~~  194 (219)
                      +++         +| ..+..+++|++|++++|.+..
T Consensus        93 l~~---------l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           93 LKS---------IPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCC---------CCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             cce---------eCHHHhccccCCCEEEeCCCCccc
Confidence            853         34 348889999999999999976

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.29  E-value=3.7e-11  Score=104.53  Aligned_cols=109  Identities=25%  Similarity=0.325  Sum_probs=78.7

Q ss_pred             ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcc
Q 040237           92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTS  171 (219)
Q Consensus        92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~  171 (219)
                      ++.+..+++|++|++++|.+.+  +++ +..+++|++|++++|.+++ +|. +..+++|+.|++++|++++..       
T Consensus       236 ~~~l~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~-------  303 (466)
T 1o6v_A          236 IGTLASLTNLTDLDLANNQISN--LAP-LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDIS-------  303 (466)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCG-------
T ss_pred             chhhhcCCCCCEEECCCCcccc--chh-hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCch-------
Confidence            4458889999999999999985  444 8999999999999999995 444 889999999999999987531       


Q ss_pred             ccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       172 ~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                        . +..+++|++|++++|.+++ ..|  +..+++|++|++++|+++
T Consensus       304 --~-~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          304 --P-ISNLKNLTYLTLYFNNISD-ISP--VSSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             --G-GGGCTTCSEEECCSSCCSC-CGG--GGGCTTCCEEECCSSCCC
T ss_pred             --h-hcCCCCCCEEECcCCcCCC-chh--hccCccCCEeECCCCccC
Confidence              1 4555566666666666555 222  444455555555555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.29  E-value=2.7e-12  Score=108.22  Aligned_cols=114  Identities=22%  Similarity=0.333  Sum_probs=48.5

Q ss_pred             CCCEeecCCCCCCCCCCchhhcCC-----CCCCEEEcccCCCCCCCchhhhc----C-CCCcEEEccCCCCCCCccccCC
Q 040237          100 SILSGNLAGNDFRYPEIPPEIANL-----SRLSYLNLSDSFFTGQIPSEILE----L-SNLVSLDLSGNGYSGGFLELGK  169 (219)
Q Consensus       100 ~L~~L~L~~n~l~~~~~p~~l~~l-----~~L~~L~Ls~n~l~g~lp~~~~~----l-~~L~~L~Ls~N~l~g~~~~~~~  169 (219)
                      +|++|++++|.+... .+..+..+     ++|++|++++|.+++..+..+..    + ++|++|++++|.+++..    .
T Consensus        52 ~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~----~  126 (362)
T 3goz_A           52 SVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS----S  126 (362)
T ss_dssp             TCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC----H
T ss_pred             ceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH----H
Confidence            455555555544432 33333332     44555555555544333332222    2 44555555555442210    0


Q ss_pred             ccccHHHhcC-CCCCEEeccCccCCCC---CcChhhcCCC-CCCEeeccccccc
Q 040237          170 TSLTNLVQKL-TNLETLNLGRVLIFNT---PIPHNLGNLS-SLRFLSLQNCLVQ  218 (219)
Q Consensus       170 ~~~p~~l~~l-~~L~~L~l~~N~l~~~---~~p~~l~~l~-~L~~L~ls~N~l~  218 (219)
                      ..+...+..+ ++|++|++++|.+++.   .++..+..++ +|++|++++|+++
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence            0111222232 3566666666655430   1222333443 5666666666553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.29  E-value=7.1e-12  Score=112.00  Aligned_cols=35  Identities=17%  Similarity=0.149  Sum_probs=30.7

Q ss_pred             CEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          183 ETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       183 ~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      +.|++++|.++.  +|..+..+++|++|++++|+++|
T Consensus       210 ~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          210 IFFRCRENRITH--IPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             EEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCH
T ss_pred             eEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCC
Confidence            899999999865  88888889999999999999864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.28  E-value=5.8e-14  Score=108.76  Aligned_cols=110  Identities=23%  Similarity=0.250  Sum_probs=91.9

Q ss_pred             cccCCCCCEeecCCCCCCCCCCch------hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPP------EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG  168 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~------~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~  168 (219)
                      +.....++.++++.+.+.+. +|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++       
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~-~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-------   83 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGM-IPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-------   83 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBC-CTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-------
T ss_pred             HHhcccccCcchheeEeccc-cCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-------
Confidence            44455666667777766664 554      89999999999999999995 78 8899999999999999984       


Q ss_pred             CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          169 KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       169 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                        .+|..+..+++|++|++++|.+++  +| .+..+++|++|++++|++++
T Consensus        84 --~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A           84 --KIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             --SCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEEESEEECCC
T ss_pred             --cccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEEECCCCcCCc
Confidence              467777778999999999999977  56 68889999999999999863

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.26  E-value=2e-11  Score=102.07  Aligned_cols=104  Identities=14%  Similarity=0.112  Sum_probs=88.1

Q ss_pred             CEeecCCC-CCCCCCCchhhcCCCCCCEEEccc-CCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcC
Q 040237          102 LSGNLAGN-DFRYPEIPPEIANLSRLSYLNLSD-SFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL  179 (219)
Q Consensus       102 ~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~-n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l  179 (219)
                      ..++++++ +++  .+|. +..+++|++|+|++ |.+++..|..|..+++|+.|+|++|++++        ..|..+.++
T Consensus        11 ~~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--------~~~~~~~~l   79 (347)
T 2ifg_A           11 SGLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--------VAPDAFHFT   79 (347)
T ss_dssp             SCEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--------ECTTGGGSC
T ss_pred             CEEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce--------eCHHHhcCC
Confidence            35688888 888  4899 99999999999996 99997666789999999999999999954        456678999


Q ss_pred             CCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          180 TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       180 ~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      ++|++|+|++|++++ ..+..+..++ |+.|++.+|++.
T Consensus        80 ~~L~~L~l~~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           80 PRLSRLNLSFNALES-LSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCCEEECCSSCCSC-CCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cCCCEEeCCCCccce-eCHHHcccCC-ceEEEeeCCCcc
Confidence            999999999999987 3344455554 999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.26  E-value=2.4e-12  Score=109.28  Aligned_cols=120  Identities=22%  Similarity=0.210  Sum_probs=71.8

Q ss_pred             cccCCCCCEeecCCCCCCCCC----CchhhcCCCCCCEEEcccCCCC----CCCchhhhcCCCCcEEEccCCCCCCCccc
Q 040237           95 AFSILSILSGNLAGNDFRYPE----IPPEIANLSRLSYLNLSDSFFT----GQIPSEILELSNLVSLDLSGNGYSGGFLE  166 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~----~p~~l~~l~~L~~L~Ls~n~l~----g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~  166 (219)
                      +..+++|++|++++|.+....    +|..+..+++|++|++++|.++    +.+|..+..+++|+.|++++|.+++.   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~---  259 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR---  259 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH---
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh---
Confidence            445566666666666655110    2225556666777777777664    35566666667777777777766321   


Q ss_pred             cCCccccHHHhc--CCCCCEEeccCccCCCCC----cChhh-cCCCCCCEeecccccccC
Q 040237          167 LGKTSLTNLVQK--LTNLETLNLGRVLIFNTP----IPHNL-GNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       167 ~~~~~~p~~l~~--l~~L~~L~l~~N~l~~~~----~p~~l-~~l~~L~~L~ls~N~l~G  219 (219)
                       +...++..+..  +++|++|++++|.+++ .    +|..+ .++++|++|++++|++++
T Consensus       260 -~~~~l~~~l~~~~~~~L~~L~L~~n~i~~-~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          260 -GAAAVVDAFSKLENIGLQTLRLQYNEIEL-DAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             -HHHHHHHHHHTCSSCCCCEEECCSSCCBH-HHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             -hHHHHHHHHhhccCCCeEEEECcCCcCCH-HHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence             00124555533  6777777777777754 2    55555 456777777777777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.25  E-value=4.7e-11  Score=103.97  Aligned_cols=104  Identities=15%  Similarity=0.151  Sum_probs=81.9

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|++|++++|.+++  +|  +..+++|++|++++|++++ +|  ++.+++|++|++++|++++         ++ 
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~---------l~-  143 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE---------ID-  143 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC---------CC-
T ss_pred             cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce---------ec-
Confidence            7778888888888888885  43  7788888888888888885 55  7788888888888888854         22 


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                       ++++++|++|++++|...+ .+  .+..+++|++|++++|++++
T Consensus       144 -l~~l~~L~~L~l~~n~~~~-~~--~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          144 -VSHNTQLTELDCHLNKKIT-KL--DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             -CTTCTTCCEEECTTCSCCC-CC--CCTTCTTCCEEECCSSCCCC
T ss_pred             -cccCCcCCEEECCCCCccc-cc--ccccCCcCCEEECCCCccce
Confidence             6678888888888886555 45  36778888888888888764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.25  E-value=1.2e-11  Score=110.50  Aligned_cols=104  Identities=23%  Similarity=0.283  Sum_probs=62.5

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      +++++ +|. +.  ++|++|++++|.++  .+|   ..+++|++|++++|.+++ +|. +..  +|+.|++++|.+++  
T Consensus        69 n~L~~-lp~~l~--~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~--  134 (571)
T 3cvr_A           69 LNLSS-LPDNLP--PQITVLEITQNALI--SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM--  134 (571)
T ss_dssp             SCCSC-CCSCCC--TTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC--
T ss_pred             CCCCc-cCHhHc--CCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC--
Confidence            34444 665 42  67888888888887  367   456788888888888875 666 543  77777777777754  


Q ss_pred             cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                             +|.   .+++|++|++++|.+++  +|.   .+++|++|++++|+++
T Consensus       135 -------lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A          135 -------LPE---LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLT  173 (571)
T ss_dssp             -------CCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCS
T ss_pred             -------CCC---cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCC
Confidence                   222   34445555555555543  333   2344444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.23  E-value=4.4e-12  Score=107.66  Aligned_cols=122  Identities=20%  Similarity=0.227  Sum_probs=63.5

Q ss_pred             ccCCCCCEeecCCCCCCCC---CCchhhcCCCCCCEEEcccCCCCCCCchh----hhcC---------CCCcEEEccCCC
Q 040237           96 FSILSILSGNLAGNDFRYP---EIPPEIANLSRLSYLNLSDSFFTGQIPSE----ILEL---------SNLVSLDLSGNG  159 (219)
Q Consensus        96 ~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~----~~~l---------~~L~~L~Ls~N~  159 (219)
                      ..+++|++|++++|.+...   .+|..+..+++|++|++++|.+++..+..    +..+         ++|++|++++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            4667777777777776641   04555666666666666666664322222    2222         566666666666


Q ss_pred             CCC-Cccc----------cC---------C--c---cccHHHhcCCCCCEEeccCccCC----CCCcChhhcCCCCCCEe
Q 040237          160 YSG-GFLE----------LG---------K--T---SLTNLVQKLTNLETLNLGRVLIF----NTPIPHNLGNLSSLRFL  210 (219)
Q Consensus       160 l~g-~~~~----------~~---------~--~---~~p~~l~~l~~L~~L~l~~N~l~----~~~~p~~l~~l~~L~~L  210 (219)
                      ++. .++.          +.         .  +   ..+..+..+++|++|++++|.++    + .+|..+..+++|++|
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-ALAIALKSWPNLREL  249 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH-HHHHHGGGCTTCCEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH-HHHHHHccCCCcCEE
Confidence            541 1110          00         0  0   01114445555666666655553    2 345555556666666


Q ss_pred             eccccccc
Q 040237          211 SLQNCLVQ  218 (219)
Q Consensus       211 ~ls~N~l~  218 (219)
                      ++++|+++
T Consensus       250 ~L~~n~i~  257 (386)
T 2ca6_A          250 GLNDCLLS  257 (386)
T ss_dssp             ECTTCCCC
T ss_pred             ECCCCCCc
Confidence            66666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.20  E-value=1e-10  Score=101.81  Aligned_cols=64  Identities=14%  Similarity=0.224  Sum_probs=39.4

Q ss_pred             ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCC
Q 040237           92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG  162 (219)
Q Consensus        92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g  162 (219)
                      +|.+..+++|++|++++|.+++  +|..+   .+|++|++++|.+++ +| .+..+++|++|++++|.+++
T Consensus       146 lp~~~~l~~L~~L~l~~N~l~~--lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          146 LPELQNSSFLKIIDVDNNSLKK--LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             CCCCTTCTTCCEEECCSSCCSC--CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             CcccCCCCCCCEEECCCCcCcc--cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence            4445666666666666666653  44322   366666666666663 45 46677777777777777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.13  E-value=2.3e-10  Score=103.22  Aligned_cols=78  Identities=29%  Similarity=0.297  Sum_probs=56.2

Q ss_pred             CCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcC
Q 040237          124 SRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGN  203 (219)
Q Consensus       124 ~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~  203 (219)
                      ++|++|++++|.++ .+|   ..+++|+.|++++|.++         .+|.   .+++|+.|++++|.++.  +|..+.+
T Consensus       221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~---------~lp~---~~~~L~~L~Ls~N~L~~--lp~~l~~  282 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT---------SLPM---LPSGLLSLSVYRNQLTR--LPESLIH  282 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS---------CCCC---CCTTCCEEECCSSCCCS--CCGGGGG
T ss_pred             CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC---------cCCc---ccccCcEEeCCCCCCCc--CCHHHhh
Confidence            45555566666555 244   33456666666666653         3444   56789999999999965  8999999


Q ss_pred             CCCCCEeecccccccC
Q 040237          204 LSSLRFLSLQNCLVQG  219 (219)
Q Consensus       204 l~~L~~L~ls~N~l~G  219 (219)
                      +++|+.|++++|+++|
T Consensus       283 l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          283 LSSETTVNLEGNPLSE  298 (622)
T ss_dssp             SCTTCEEECCSCCCCH
T ss_pred             ccccCEEEecCCCCCC
Confidence            9999999999999864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.11  E-value=3e-10  Score=98.82  Aligned_cols=98  Identities=24%  Similarity=0.323  Sum_probs=55.3

Q ss_pred             CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhc
Q 040237           99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK  178 (219)
Q Consensus        99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~  178 (219)
                      ++|++|++++|.+.+  +|..   .++|++|++++|.+++ +| .++.+++|++|++++|.+++         +|..   
T Consensus       111 ~~L~~L~l~~n~l~~--l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~---------lp~~---  171 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK---------LPDL---  171 (454)
T ss_dssp             TTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC---------CCCC---
T ss_pred             CCCcEEECCCCccCc--ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc---------cCCC---
Confidence            566666666666653  3321   1567777777777763 66 46677777777777777653         1111   


Q ss_pred             CCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       179 l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      ..+|++|++++|.+++  +| .++++++|++|++++|+++
T Consensus       172 ~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          172 PPSLEFIAAGNNQLEE--LP-ELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             CTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCS
T ss_pred             cccccEEECcCCcCCc--Cc-cccCCCCCCEEECCCCcCC
Confidence            1245555555555544  34 3455555555555555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.09  E-value=3e-10  Score=102.50  Aligned_cols=61  Identities=21%  Similarity=0.260  Sum_probs=45.4

Q ss_pred             cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCC
Q 040237           91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG  162 (219)
Q Consensus        91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g  162 (219)
                      .+|. +.  ++|++|++++|.++  .+|.   .+++|++|++++|+++ .+|.   .+++|++|++++|.+++
T Consensus        54 ~lp~~l~--~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~  115 (622)
T 3g06_A           54 TLPDCLP--AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH  115 (622)
T ss_dssp             CCCSCCC--TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC
T ss_pred             ccChhhC--CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC
Confidence            5565 43  68888888888887  3666   5678888888888887 5665   56778888888887754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.08  E-value=9.7e-11  Score=98.66  Aligned_cols=127  Identities=20%  Similarity=0.180  Sum_probs=98.9

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCCc----hhhcCCC-CCCEEEcccCCCCCCCchhhhcC-----CCCcEEE
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIP----PEIANLS-RLSYLNLSDSFFTGQIPSEILEL-----SNLVSLD  154 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p----~~l~~l~-~L~~L~Ls~n~l~g~lp~~~~~l-----~~L~~L~  154 (219)
                      ++++|.+|. +...++|++|++++|.++.. .+    ..+..++ +|++|++++|.+++..+..+..+     ++|++|+
T Consensus         8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~   86 (362)
T 3goz_A            8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN   86 (362)
T ss_dssp             CTTCCHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred             ccchHHHHHHHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence            467788888 56666799999999999864 44    6678888 99999999999998878777775     9999999


Q ss_pred             ccCCCCCCCccccCCccccHHHhcC-CCCCEEeccCccCCCCCcChhh----cC-CCCCCEeeccccccc
Q 040237          155 LSGNGYSGGFLELGKTSLTNLVQKL-TNLETLNLGRVLIFNTPIPHNL----GN-LSSLRFLSLQNCLVQ  218 (219)
Q Consensus       155 Ls~N~l~g~~~~~~~~~~p~~l~~l-~~L~~L~l~~N~l~~~~~p~~l----~~-l~~L~~L~ls~N~l~  218 (219)
                      +++|.+++..+    ..+...+..+ ++|++|++++|.+++ ..+..+    .. .++|++|++++|+++
T Consensus        87 Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           87 LSGNFLSYKSS----DELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             CCSSCGGGSCH----HHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             CcCCcCChHHH----HHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            99999854211    1222345555 899999999999987 444443    34 369999999999986

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.04  E-value=3.6e-11  Score=103.85  Aligned_cols=115  Identities=21%  Similarity=0.135  Sum_probs=63.8

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhc-----CCCCCCEEEcccCCCCCC----CchhhhcCCCCcEEEccCCCCCCCcc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIA-----NLSRLSYLNLSDSFFTGQ----IPSEILELSNLVSLDLSGNGYSGGFL  165 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~-----~l~~L~~L~Ls~n~l~g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~  165 (219)
                      +..+++|++|++++|.+... .+..+.     ..++|++|++++|.+++.    +|..+..+++|++|++++|.+++   
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~---  355 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDE-GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED---  355 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH---
T ss_pred             HhhCCCcceEECCCCCCchH-HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc---
Confidence            44455555555555554321 111121     124555566665555533    34445556667777777666532   


Q ss_pred             ccCCccccHHHh----c-CCCCCEEeccCccCCC---CCcChhhcCCCCCCEeeccccccc
Q 040237          166 ELGKTSLTNLVQ----K-LTNLETLNLGRVLIFN---TPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       166 ~~~~~~~p~~l~----~-l~~L~~L~l~~N~l~~---~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                           ..+..+.    . .++|++|++++|.+++   ..+|..+..+++|++|++++|+++
T Consensus       356 -----~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          356 -----AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             -----HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             -----ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence                 2222222    2 5677788888777752   035666777788888888888765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.99  E-value=2.7e-10  Score=95.58  Aligned_cols=106  Identities=15%  Similarity=0.062  Sum_probs=75.9

Q ss_pred             CcccccCCCCCCC--ccccccc-cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCch-hhhcCCC
Q 040237           75 KVASWKQGEAASK--VPSTLAA-AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPS-EILELSN  149 (219)
Q Consensus        75 ~~~~W~~~~~c~~--l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~  149 (219)
                      +.|+|. .+.|.+  ++ .+|. +  .+++++|++++|+++  .+|+ .+.++++|++|++++|++.+.+|. .|.++++
T Consensus         7 C~C~~~-~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~   80 (350)
T 4ay9_X            7 CHCSNR-VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   80 (350)
T ss_dssp             SEEETT-EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS--EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred             cEeeCC-EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC--CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence            446665 567732  33 4555 4  257889999999998  3665 588999999999999998766665 4677877


Q ss_pred             CcE-EEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCC
Q 040237          150 LVS-LDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN  194 (219)
Q Consensus       150 L~~-L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~  194 (219)
                      +++ +.++.|+++.        ..|..+..+++|++|++++|.+..
T Consensus        81 l~~~l~~~~N~l~~--------l~~~~f~~l~~L~~L~l~~n~l~~  118 (350)
T 4ay9_X           81 LHEIRIEKANNLLY--------INPEAFQNLPNLQYLLISNTGIKH  118 (350)
T ss_dssp             CCEEEEEEETTCCE--------ECTTSBCCCTTCCEEEEEEECCSS
T ss_pred             hhhhhcccCCcccc--------cCchhhhhcccccccccccccccc
Confidence            765 5566677742        235567788888888888888765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.97  E-value=2e-10  Score=99.16  Aligned_cols=46  Identities=22%  Similarity=0.223  Sum_probs=28.5

Q ss_pred             ccHHHhcCCCCCEEeccCccCCCCCcChhhcC-----CCCCCEeeccccccc
Q 040237          172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGN-----LSSLRFLSLQNCLVQ  218 (219)
Q Consensus       172 ~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~-----l~~L~~L~ls~N~l~  218 (219)
                      ++..+..+++|++|++++|.+++ ..+..+..     .++|++|++++|+++
T Consensus       333 l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          333 FSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHHHHCSSCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHHhhCCCccEEEccCCcccc-ccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            45556666777777777777655 33333322     557777777777664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.95  E-value=8.2e-10  Score=92.62  Aligned_cols=103  Identities=16%  Similarity=0.179  Sum_probs=84.5

Q ss_pred             CEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCCCCCccccCCcccc-HHHhcC
Q 040237          102 LSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGYSGGFLELGKTSLT-NLVQKL  179 (219)
Q Consensus       102 ~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p-~~l~~l  179 (219)
                      ++++.++++++  ++|..+  .+++++|++++|+++ .+|. .|.++++|++|++++|++.+        .+| ..+.++
T Consensus        12 ~~v~C~~~~Lt--~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~--------~i~~~~f~~L   78 (350)
T 4ay9_X           12 RVFLCQESKVT--EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE--------VIEADVFSNL   78 (350)
T ss_dssp             TEEEEESTTCC--SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCC--------EECTTSBCSC
T ss_pred             CEEEecCCCCC--ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCC--------ccChhHhhcc
Confidence            57889999998  588876  378999999999999 6665 68999999999999999844        344 346788


Q ss_pred             CCCCE-EeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          180 TNLET-LNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       180 ~~L~~-L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +++++ +.+.+|++.. ..|..+..+++|++|++++|+++
T Consensus        79 ~~l~~~l~~~~N~l~~-l~~~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           79 PKLHEIRIEKANNLLY-INPEAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             TTCCEEEEEEETTCCE-ECTTSBCCCTTCCEEEEEEECCS
T ss_pred             hhhhhhhcccCCcccc-cCchhhhhccccccccccccccc
Confidence            88765 6666788977 45678899999999999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.89  E-value=2.7e-10  Score=101.35  Aligned_cols=127  Identities=17%  Similarity=0.096  Sum_probs=81.8

Q ss_pred             CCccccccc-ccc-CCCCCEeecC----CCCCCCCC----CchhhcCCCCCCEEEcccC--CCCCCCchhhhc-CCCCcE
Q 040237           86 SKVPSTLAA-AFS-ILSILSGNLA----GNDFRYPE----IPPEIANLSRLSYLNLSDS--FFTGQIPSEILE-LSNLVS  152 (219)
Q Consensus        86 ~~l~g~lp~-l~~-l~~L~~L~L~----~n~l~~~~----~p~~l~~l~~L~~L~Ls~n--~l~g~lp~~~~~-l~~L~~  152 (219)
                      +.+++..+. +.. +++|++|+++    .|.+++..    ++..+..+++|++|+++.+  .+++..+..+.. +++|++
T Consensus       388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~  467 (592)
T 3ogk_B          388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW  467 (592)
T ss_dssp             SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred             CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence            344443333 333 6667777774    45555310    2223555777777777643  355444444443 778888


Q ss_pred             EEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          153 LDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       153 L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      |++++|.+++       ..++..+..+++|++|++++|.+++..++..+..+++|++|++++|++++
T Consensus       468 L~L~~n~l~~-------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          468 MLLGYVGESD-------EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             EEECSCCSSH-------HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             eeccCCCCCH-------HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            8888887742       24566678889999999999988762355556678899999999998763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.83  E-value=4.6e-10  Score=95.25  Aligned_cols=117  Identities=17%  Similarity=0.154  Sum_probs=75.9

Q ss_pred             cCCCCCEeecCCCCCCCCCCchhh-----cCCCCCCEEEcccCCCCC----CCchhhhcCCCCcEEEccCCCCCCCcccc
Q 040237           97 SILSILSGNLAGNDFRYPEIPPEI-----ANLSRLSYLNLSDSFFTG----QIPSEILELSNLVSLDLSGNGYSGGFLEL  167 (219)
Q Consensus        97 ~l~~L~~L~L~~n~l~~~~~p~~l-----~~l~~L~~L~Ls~n~l~g----~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~  167 (219)
                      .+.+|++|++++|.++.. -...+     ...++|++|++++|.++.    .++..+..+++|++|++++|.++..    
T Consensus       124 ~L~~L~~L~Ls~n~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~----  198 (372)
T 3un9_A          124 VFLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE----  198 (372)
T ss_dssp             HHHTEEEEECCSSCCCHH-HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH----
T ss_pred             HHHhccHhhcCCCCCCHH-HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH----
Confidence            455677777777776532 11222     245778888888887763    2344456677888888888877420    


Q ss_pred             CCccccHHHhcCCCCCEEeccCccCCCC---CcChhhcCCCCCCEeeccccccc
Q 040237          168 GKTSLTNLVQKLTNLETLNLGRVLIFNT---PIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       168 ~~~~~p~~l~~l~~L~~L~l~~N~l~~~---~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +...+...+...++|++|++++|.+++.   .++..+...++|++|++++|.|+
T Consensus       199 g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          199 GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            0113455667777888888888888651   13344556688888888888875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.77  E-value=6.7e-10  Score=94.26  Aligned_cols=117  Identities=15%  Similarity=0.102  Sum_probs=84.9

Q ss_pred             CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhh-----hcCCCCcEEEccCCCCCCCccccCCccc
Q 040237           98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEI-----LELSNLVSLDLSGNGYSGGFLELGKTSL  172 (219)
Q Consensus        98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~-----~~l~~L~~L~Ls~N~l~g~~~~~~~~~~  172 (219)
                      ..+|++|++++|.+....+......+++|++|++++|.++......+     ...++|+.|++++|.++..    +...+
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~----~~~~l  175 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA----GVAVL  175 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH----HHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChH----HHHHH
Confidence            36899999999988642122223346788999999999875433333     2467899999999988421    01235


Q ss_pred             cHHHhcCCCCCEEeccCccCCCC---CcChhhcCCCCCCEeeccccccc
Q 040237          173 TNLVQKLTNLETLNLGRVLIFNT---PIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       173 p~~l~~l~~L~~L~l~~N~l~~~---~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +..+...++|++|++++|.+++.   .++..+...++|++|++++|.++
T Consensus       176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            66678889999999999998651   13556777889999999999885

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.74  E-value=3.5e-09  Score=81.07  Aligned_cols=124  Identities=17%  Similarity=0.122  Sum_probs=93.1

Q ss_pred             ccccc-cccCCCCCEeecCCC-CCCCC---CCchhhcCCCCCCEEEcccCCCCCC----CchhhhcCCCCcEEEccCCCC
Q 040237           90 STLAA-AFSILSILSGNLAGN-DFRYP---EIPPEIANLSRLSYLNLSDSFFTGQ----IPSEILELSNLVSLDLSGNGY  160 (219)
Q Consensus        90 g~lp~-l~~l~~L~~L~L~~n-~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~g~----lp~~~~~l~~L~~L~Ls~N~l  160 (219)
                      ..+.. +...+.|++|++++| .+...   .+...+...++|++|++++|.+...    +...+...+.|++|++++|.+
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            33444 677899999999999 88631   1345677789999999999999742    344566678999999999998


Q ss_pred             CCCccccCCccccHHHhcCCCCCEEec--cCccCCCCC----cChhhcCCCCCCEeeccccccc
Q 040237          161 SGGFLELGKTSLTNLVQKLTNLETLNL--GRVLIFNTP----IPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       161 ~g~~~~~~~~~~p~~l~~l~~L~~L~l--~~N~l~~~~----~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +..    +...+...+...++|++|++  ++|.+.. .    +...+...++|++|++++|.+.
T Consensus       106 ~~~----g~~~l~~~L~~n~~L~~L~L~~~~N~i~~-~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          106 SGS----GILALVEALQSNTSLIELRIDNQSQPLGN-NVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CHH----HHHHHHHGGGGCSSCCEEECCCCSSCCCH-HHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CHH----HHHHHHHHHHhCCCceEEEecCCCCCCCH-HHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            421    11124566778889999999  8899875 3    3455666789999999999873

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.70  E-value=4.1e-09  Score=93.72  Aligned_cols=115  Identities=15%  Similarity=0.083  Sum_probs=78.0

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcC-CCCCCEEEcc----cCCCCCC-----CchhhhcCCCCcEEEccCCC--CCC
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIAN-LSRLSYLNLS----DSFFTGQ-----IPSEILELSNLVSLDLSGNG--YSG  162 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~-l~~L~~L~Ls----~n~l~g~-----lp~~~~~l~~L~~L~Ls~N~--l~g  162 (219)
                      ...+++|++|+++.+.+++. .+..+.. +++|++|+++    .|.+++.     ++..+..+++|+.|+++.+.  ++ 
T Consensus       374 ~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~-  451 (592)
T 3ogk_B          374 AQGCQELEYMAVYVSDITNE-SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT-  451 (592)
T ss_dssp             HHHCTTCSEEEEEESCCCHH-HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC-
T ss_pred             HhhCccCeEEEeecCCccHH-HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc-
Confidence            44567777777776766653 4444544 7777777775    5566642     33345667788888886432  42 


Q ss_pred             CccccCCccccHHH-hcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          163 GFLELGKTSLTNLV-QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       163 ~~~~~~~~~~p~~l-~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                             ...+..+ ..+++|++|++++|.+++..++..+..+++|++|++++|+++
T Consensus       452 -------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          452 -------DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             -------HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred             -------HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence                   2233333 458899999999999876345666788999999999999875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.54  E-value=9.3e-09  Score=91.34  Aligned_cols=114  Identities=16%  Similarity=0.192  Sum_probs=77.1

Q ss_pred             cCCCCCEeecC--C----CCCCCCC----CchhhcCCCCCCEEEcccCCCCCCCchhhhc-CCCCcEEEccCCCCCCCcc
Q 040237           97 SILSILSGNLA--G----NDFRYPE----IPPEIANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSGGFL  165 (219)
Q Consensus        97 ~l~~L~~L~L~--~----n~l~~~~----~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~-l~~L~~L~Ls~N~l~g~~~  165 (219)
                      .+++|++|+++  +    +.++...    ++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++   
T Consensus       395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~---  470 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD---  470 (594)
T ss_dssp             HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH---
T ss_pred             hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH---
Confidence            57788888888  3    4444210    122255678888888876 565554555555 7889999999998743   


Q ss_pred             ccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          166 ELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       166 ~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                          ..++.....+++|++|++++|.+++..+......+++|++|++++|+++
T Consensus       471 ----~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          471 ----LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             ----HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             ----HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence                1233333678999999999999865122234556889999999998764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.52  E-value=1.3e-07  Score=76.48  Aligned_cols=82  Identities=27%  Similarity=0.309  Sum_probs=60.2

Q ss_pred             cCCCCCCEEEcccCCCCC--CCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcC
Q 040237          121 ANLSRLSYLNLSDSFFTG--QIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIP  198 (219)
Q Consensus       121 ~~l~~L~~L~Ls~n~l~g--~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p  198 (219)
                      .++++|+.|+|++|++++  .+|..+..+++|+.|+|++|.+++.      ..+ ..+..+ +|++|++++|.+.+ .+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~------~~l-~~l~~l-~L~~L~L~~Npl~~-~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE------REL-DKIKGL-KLEELWLDGNSLCD-TFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG------GGG-GGGTTS-CCSEEECTTSTTGG-GCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc------hhh-hhcccC-CcceEEccCCcCcc-ccC
Confidence            357889999999999886  4556777889999999999988641      111 223333 88999999999877 665


Q ss_pred             h-------hhcCCCCCCEee
Q 040237          199 H-------NLGNLSSLRFLS  211 (219)
Q Consensus       199 ~-------~l~~l~~L~~L~  211 (219)
                      .       .+..+++|+.||
T Consensus       238 ~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          238 DQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             SHHHHHHHHHHHCTTCCEES
T ss_pred             cchhHHHHHHHHCcccCeEC
Confidence            2       366788888876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.43  E-value=3.4e-07  Score=74.07  Aligned_cols=89  Identities=24%  Similarity=0.309  Sum_probs=66.4

Q ss_pred             ccCCCCCEeecCCCCCCCC-CCchhhcCCCCCCEEEcccCCCCCCCchhhhcCC--CCcEEEccCCCCCCCccccCCccc
Q 040237           96 FSILSILSGNLAGNDFRYP-EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELS--NLVSLDLSGNGYSGGFLELGKTSL  172 (219)
Q Consensus        96 ~~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~--~L~~L~Ls~N~l~g~~~~~~~~~~  172 (219)
                      .++++|+.|+|++|.+.+. .+|..+..+++|+.|+|++|++++.  ..+..+.  +|++|++++|.+++.+|... ...
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~-~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQS-TYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHH-HHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcch-hHH
Confidence            4688999999999999962 0446677899999999999999954  3444444  99999999999965433110 112


Q ss_pred             cHHHhcCCCCCEEec
Q 040237          173 TNLVQKLTNLETLNL  187 (219)
Q Consensus       173 p~~l~~l~~L~~L~l  187 (219)
                      ...+..+++|+.||=
T Consensus       244 ~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          244 SAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHCTTCCEESS
T ss_pred             HHHHHHCcccCeECC
Confidence            345788999999863

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.27  E-value=4e-07  Score=80.78  Aligned_cols=114  Identities=18%  Similarity=0.135  Sum_probs=59.2

Q ss_pred             cCCCCCEeecCCCCCCCCCCchhhc-CCCCCCEEEcccC-CCCCC-CchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237           97 SILSILSGNLAGNDFRYPEIPPEIA-NLSRLSYLNLSDS-FFTGQ-IPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT  173 (219)
Q Consensus        97 ~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n-~l~g~-lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p  173 (219)
                      .+++|++|++++|.+.+. .+..+. .+++|++|++++| .++.. ++.....+++|++|++++|.+++..    ...++
T Consensus       103 ~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~----~~~l~  177 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS----GHWLS  177 (594)
T ss_dssp             HCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC----GGGGG
T ss_pred             hCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc----hHHHH
Confidence            455666666666665543 333443 4666666666666 33321 3333445666777777666654310    01122


Q ss_pred             HHHhcCCCCCEEeccCcc--CCCCCcChhhcCCCCCCEeecccc
Q 040237          174 NLVQKLTNLETLNLGRVL--IFNTPIPHNLGNLSSLRFLSLQNC  215 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~--l~~~~~p~~l~~l~~L~~L~ls~N  215 (219)
                      .....+++|++|++++|.  ++...++..+.++++|++|++++|
T Consensus       178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            223345567777776665  211012222344567777777666

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.25  E-value=1.7e-06  Score=71.53  Aligned_cols=101  Identities=14%  Similarity=0.112  Sum_probs=81.0

Q ss_pred             CCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCc-EEEccCCCCCCCccccCCccc-cH
Q 040237           98 ILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLV-SLDLSGNGYSGGFLELGKTSL-TN  174 (219)
Q Consensus        98 l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~-~L~Ls~N~l~g~~~~~~~~~~-p~  174 (219)
                      +++|+++++++|+++  .+|+ .|.++++|+.++++.| +...-+..|..+.+|+ .+++.+ .++         .+ +.
T Consensus       225 ~~~L~~l~L~~n~i~--~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~---------~I~~~  291 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT--TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT---------AIEFG  291 (329)
T ss_dssp             CTTCCEEECTTBCCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC---------EECTT
T ss_pred             cCCCeEEECCCCCcc--eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce---------EEchh
Confidence            789999999999988  3665 6889999999999998 6633344688999999 999988 442         34 46


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeec
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL  212 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~l  212 (219)
                      .|.++++|+.+++++|.+.. --+..|.++++|+.+..
T Consensus       292 aF~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          292 AFMGCDNLRYVLATGDKITT-LGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTTCTTEEEEEECSSCCCE-ECTTTTCTTCCCCEEEC
T ss_pred             hhhCCccCCEEEeCCCccCc-cchhhhcCCcchhhhcc
Confidence            78899999999999999866 33457889999998863

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.24  E-value=5.3e-07  Score=68.80  Aligned_cols=98  Identities=15%  Similarity=0.128  Sum_probs=74.5

Q ss_pred             chhhcCCCCCCEEEcccC-CCCCC----CchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCcc
Q 040237          117 PPEIANLSRLSYLNLSDS-FFTGQ----IPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVL  191 (219)
Q Consensus       117 p~~l~~l~~L~~L~Ls~n-~l~g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~  191 (219)
                      ...+...+.|++|++++| .+...    +...+...++|++|+|++|.+...    +...+...+...++|++|++++|.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~----g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP----VAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH----HHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH----HHHHHHHHHHhCCCcCEEECcCCc
Confidence            345677899999999999 88742    344566778999999999998421    112345667777899999999999


Q ss_pred             CCCC---CcChhhcCCCCCCEeec--cccccc
Q 040237          192 IFNT---PIPHNLGNLSSLRFLSL--QNCLVQ  218 (219)
Q Consensus       192 l~~~---~~p~~l~~l~~L~~L~l--s~N~l~  218 (219)
                      +.+.   .+...+...++|++|++  ++|.++
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            9761   14566777889999999  889875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.20  E-value=3.4e-06  Score=69.78  Aligned_cols=83  Identities=18%  Similarity=0.229  Sum_probs=57.4

Q ss_pred             CCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCCCCCccccCCccc-cHHHhcCCCCC-EEeccCccCCCCCcCh
Q 040237          123 LSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGYSGGFLELGKTSL-TNLVQKLTNLE-TLNLGRVLIFNTPIPH  199 (219)
Q Consensus       123 l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~-p~~l~~l~~L~-~L~l~~N~l~~~~~p~  199 (219)
                      +++|+++++++|+++ .+|+ .|..+.+|+.+++.+| ++         .+ +..|.++.+|+ .+++.+ .++. --+.
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~---------~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~  291 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LK---------TIGQRVFSNCGRLAGTLELPA-SVTA-IEFG  291 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CC---------EECTTTTTTCTTCCEEEEECT-TCCE-ECTT
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cc---------eehHHHhhCChhccEEEEEcc-cceE-Echh
Confidence            567777777777777 4444 5677777888877776 42         23 34577788888 888877 5543 2246


Q ss_pred             hhcCCCCCCEeeccccccc
Q 040237          200 NLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       200 ~l~~l~~L~~L~ls~N~l~  218 (219)
                      .|.++++|+.+++++|+++
T Consensus       292 aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          292 AFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             TTTTCTTEEEEEECSSCCC
T ss_pred             hhhCCccCCEEEeCCCccC
Confidence            7888888888888777653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.12  E-value=9.3e-07  Score=74.63  Aligned_cols=64  Identities=14%  Similarity=0.317  Sum_probs=40.7

Q ss_pred             cCCCCcEEEccCCCCCCCccccCCccccHHHh---cCCCCCEEeccCccCCCCC----cChhhcCCCCCCEeeccccccc
Q 040237          146 ELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQ---KLTNLETLNLGRVLIFNTP----IPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       146 ~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~---~l~~L~~L~l~~N~l~~~~----~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      .+++|+.|++++|.+..        ..+..+.   .+++|++|+++.|.+.+ .    ++..+.++++|+.|++++|.++
T Consensus       250 ~~p~Lr~L~L~~~~i~~--------~~~~~la~a~~~~~L~~LdLs~n~L~d-~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQN--------VVVEMFLESDILPQLETMDISAGVLTD-EGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTHH--------HHHHHHHHCSSGGGCSEEECCSSCCBH-HHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCCCch--------HHHHHHHhCccCCCCCEEECCCCCCCh-HHHHHHHhhcccCCcceEEECCCCcCC
Confidence            35667777777666521        1222232   46778888888888765 2    3334456688888888888765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.11  E-value=1.4e-06  Score=73.50  Aligned_cols=120  Identities=17%  Similarity=0.145  Sum_probs=76.0

Q ss_pred             cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhh--cCCCCcEEEccC--CCCCCCcc
Q 040237           91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEIL--ELSNLVSLDLSG--NGYSGGFL  165 (219)
Q Consensus        91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~--~l~~L~~L~Ls~--N~l~g~~~  165 (219)
                      .+.+ +..+++|+.|++++|.-.  .++. + .+++|++|++..+.+.......+.  .+++|+.|+|+.  |...|...
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~  238 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD  238 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh
Confidence            3445 667788999998887311  2444 3 378899999988877643333443  689999999864  22211100


Q ss_pred             ccCCccccHHH--hcCCCCCEEeccCccCCCCCcChhh---cCCCCCCEeeccccccc
Q 040237          166 ELGKTSLTNLV--QKLTNLETLNLGRVLIFNTPIPHNL---GNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       166 ~~~~~~~p~~l--~~l~~L~~L~l~~N~l~~~~~p~~l---~~l~~L~~L~ls~N~l~  218 (219)
                         ...+...+  ..+++|++|++.+|.+.+ ..+..+   ..+++|++|+++.|.++
T Consensus       239 ---~~~l~~~l~~~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          239 ---MNVFRPLFSKDRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             ---GGGTGGGSCTTTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             ---HHHHHHHHhcCCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCC
Confidence               00111222  347899999999998865 333333   35789999999999875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.02  E-value=3.7e-06  Score=63.70  Aligned_cols=95  Identities=11%  Similarity=0.119  Sum_probs=65.9

Q ss_pred             cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCC-CCCCCchhhhcC----CCCcEEEccCCC-CCCC
Q 040237           91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSF-FTGQIPSEILEL----SNLVSLDLSGNG-YSGG  163 (219)
Q Consensus        91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~g~lp~~~~~l----~~L~~L~Ls~N~-l~g~  163 (219)
                      .+|. ...--.|++||++++.++.. --..+..+++|++|+|+++. ++..--..+..+    ++|++|++++|. +|. 
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD-  129 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD-  129 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH-
T ss_pred             cCCcccCCCceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH-
Confidence            4454 32335799999999987743 22457889999999999985 664433445554    379999999985 531 


Q ss_pred             ccccCCccccHHHhcCCCCCEEeccCcc-CCC
Q 040237          164 FLELGKTSLTNLVQKLTNLETLNLGRVL-IFN  194 (219)
Q Consensus       164 ~~~~~~~~~p~~l~~l~~L~~L~l~~N~-l~~  194 (219)
                             .--..+.++++|++|+++++. +++
T Consensus       130 -------~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          130 -------KGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             -------HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             -------HHHHHHhcCCCCCEEECCCCCCCCc
Confidence                   223456788999999999875 544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.75  E-value=2.2e-05  Score=59.42  Aligned_cols=85  Identities=11%  Similarity=0.092  Sum_probs=63.7

Q ss_pred             CCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCC-CCCCccccCCccccHHHhcC----CCCCEEeccCcc-CCCCC
Q 040237          123 LSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG-YSGGFLELGKTSLTNLVQKL----TNLETLNLGRVL-IFNTP  196 (219)
Q Consensus       123 l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~-l~g~~~~~~~~~~p~~l~~l----~~L~~L~l~~N~-l~~~~  196 (219)
                      -..|+.||++++.++..--..+..+++|+.|+|++|. ++        ..--..++.+    ++|++|++++|. +++ .
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It--------D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD-~  130 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE--------DGCLERLSQLENLQKSMLEMEIISCGNVTD-K  130 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC--------HHHHHHHHTCHHHHHHCCEEEEESCTTCCH-H
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC--------HHHHHHHHhcccccCCCCEEEcCCCCcCCH-H
Confidence            3579999999999876555567889999999999985 53        2222345554    379999999975 776 3


Q ss_pred             cChhhcCCCCCCEeeccccc
Q 040237          197 IPHNLGNLSSLRFLSLQNCL  216 (219)
Q Consensus       197 ~p~~l~~l~~L~~L~ls~N~  216 (219)
                      --..+.++++|++|+++++.
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCT
T ss_pred             HHHHHhcCCCCCEEECCCCC
Confidence            33557789999999999875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.34  E-value=0.0001  Score=56.76  Aligned_cols=123  Identities=9%  Similarity=0.021  Sum_probs=84.4

Q ss_pred             cccc-cccCCCCCEeecCCC-CCCCC---CCchhhcCCCCCCEEEcccCCCCC----CCchhhhcCCCCcEEEccCCCCC
Q 040237           91 TLAA-AFSILSILSGNLAGN-DFRYP---EIPPEIANLSRLSYLNLSDSFFTG----QIPSEILELSNLVSLDLSGNGYS  161 (219)
Q Consensus        91 ~lp~-l~~l~~L~~L~L~~n-~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~g----~lp~~~~~l~~L~~L~Ls~N~l~  161 (219)
                      .+.. +.+-+.|++|+|++| .+...   .+-+.+..-+.|+.|+|++|.+..    .+...+..-..|+.|+|++|.+.
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3444 566788999999986 66521   134567778899999999999974    33445666789999999999985


Q ss_pred             CCccccCCccccHHHhcCCCCCEEeccCc---cCCC---CCcChhhcCCCCCCEeecccccc
Q 040237          162 GGFLELGKTSLTNLVQKLTNLETLNLGRV---LIFN---TPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       162 g~~~~~~~~~~p~~l~~l~~L~~L~l~~N---~l~~---~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      ..    +...+-+.+..-+.|++|++++|   .+..   +.+...+..-+.|+.|+++.|.+
T Consensus       112 ~~----Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          112 PE----LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HH----HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HH----HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            31    11123445666678999999865   3332   01334556667899999988754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.23  E-value=0.00084  Score=57.16  Aligned_cols=115  Identities=12%  Similarity=0.136  Sum_probs=64.8

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcc-------cc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFL-------EL  167 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~-------~~  167 (219)
                      +.++.+|+.+++++|+++  .++.......+|+.+.+..+ +...-...|..+.+|+.+++..|- +. +.       .+
T Consensus       176 F~~c~~L~~l~l~~n~l~--~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l-~~-I~~~aF~~~~L  250 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKIT--KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENV-ST-IGQEAFRESGI  250 (401)
T ss_dssp             TTTCTTCCEEECTTSCCS--EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTC-CE-ECTTTTTTCCC
T ss_pred             hhCcccCCeeecCCCcce--EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCc-cC-ccccccccCCc
Confidence            667777888888777766  34543333466666666633 442223346666677777765541 00 00       00


Q ss_pred             C-------Cccc-cHHHhcCCCCCEEeccCccCCC---CCc-ChhhcCCCCCCEeeccc
Q 040237          168 G-------KTSL-TNLVQKLTNLETLNLGRVLIFN---TPI-PHNLGNLSSLRFLSLQN  214 (219)
Q Consensus       168 ~-------~~~~-p~~l~~l~~L~~L~l~~N~l~~---~~~-p~~l~~l~~L~~L~ls~  214 (219)
                      .       ...+ ...|.++++|+.+++.+|.+..   ..+ +..|..+++|+.+++..
T Consensus       251 ~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          251 TTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE  309 (401)
T ss_dssp             SEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred             cEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence            0       0112 3446677788888887776541   013 35677778888887764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.14  E-value=0.00094  Score=56.85  Aligned_cols=55  Identities=16%  Similarity=0.134  Sum_probs=24.6

Q ss_pred             CCCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCC-----CCCchhhhcCCCCcEEEcc
Q 040237           99 LSILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFT-----GQIPSEILELSNLVSLDLS  156 (219)
Q Consensus        99 ~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~-----g~lp~~~~~l~~L~~L~Ls  156 (219)
                      .+|+.+.+. ++++.  ++ ..+.++++|+.+++.+|.+.     ..-+..|..+.+|+.+++.
T Consensus       248 ~~L~~i~lp-~~i~~--I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          248 SGITTVKLP-NGVTN--IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             CCCSEEEEE-TTCCE--ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             CCccEEEeC-CCccE--EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            455555552 22331  22 24555555555555554432     0112234455555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.83  E-value=0.0028  Score=45.16  Aligned_cols=55  Identities=16%  Similarity=0.268  Sum_probs=35.8

Q ss_pred             EeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCC
Q 040237          103 SGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGY  160 (219)
Q Consensus       103 ~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l  160 (219)
                      .++.++++++-..+|..+.  +++++|+|++|+++ .+|. .|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence            5666777665111554432  45777888888887 4444 466777888888888865

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.76  E-value=0.002  Score=45.93  Aligned_cols=55  Identities=22%  Similarity=0.300  Sum_probs=25.9

Q ss_pred             EEEcccCCCC-CCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccC
Q 040237          128 YLNLSDSFFT-GQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLI  192 (219)
Q Consensus       128 ~L~Ls~n~l~-g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l  192 (219)
                      .++-+++.++ ..+|..+.  .+++.|+|++|+++.        --+..+..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~--------l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTA--------LPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSS--------CCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCc--------cChhhhhhccccCEEEecCCCe
Confidence            4555555554 23443221  245566666665531        1122344555555666655544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.68  E-value=0.0013  Score=50.57  Aligned_cols=93  Identities=12%  Similarity=0.105  Sum_probs=67.3

Q ss_pred             hhcCCCCCCEEEcccC-CCCC----CCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCC
Q 040237          119 EIANLSRLSYLNLSDS-FFTG----QIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIF  193 (219)
Q Consensus       119 ~l~~l~~L~~L~Ls~n-~l~g----~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~  193 (219)
                      .+.+-+.|++|+|++| .+..    .+...+..-..|+.|+|++|.+..    .+...+.+.+..-+.|++|+|+.|.|.
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd----~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD----SEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH----HHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh----HHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3456689999999986 7653    234456667899999999999842    112345566777789999999999997


Q ss_pred             CC---CcChhhcCCCCCCEeecccc
Q 040237          194 NT---PIPHNLGNLSSLRFLSLQNC  215 (219)
Q Consensus       194 ~~---~~p~~l~~l~~L~~L~ls~N  215 (219)
                      +.   .+-..+..-+.|++|++++|
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCC
Confidence            51   13345566678999999865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.66  E-value=0.055  Score=45.38  Aligned_cols=103  Identities=17%  Similarity=0.223  Sum_probs=57.4

Q ss_pred             cccCCCCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCCCCCc-hhhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFTGQIP-SEILELSNLVSLDLSGNGYSGGFLELGKTSL  172 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~g~lp-~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~  172 (219)
                      +.++..|+.+.+..+-..   +. ..+.+++.|+.+.+.. .+. .++ ..|..+.+|+.+++..+ ++         .+
T Consensus       261 F~~c~~L~~i~lp~~~~~---I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~---------~I  325 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS---IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-IT---------QI  325 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE---ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CC---------EE
T ss_pred             eeecccccEEecccccce---ecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-cc---------Ee
Confidence            555667777776554332   22 3455666777776653 333 233 24566677777776554 21         22


Q ss_pred             -cHHHhcCCCCCEEeccCccCCCCCcC-hhhcCCCCCCEeecccc
Q 040237          173 -TNLVQKLTNLETLNLGRVLIFNTPIP-HNLGNLSSLRFLSLQNC  215 (219)
Q Consensus       173 -p~~l~~l~~L~~L~l~~N~l~~~~~p-~~l~~l~~L~~L~ls~N  215 (219)
                       ...|.++.+|+.+.+..+ ++.  +. ..|.++.+|+.+++.++
T Consensus       326 ~~~aF~~C~~L~~i~ip~s-v~~--I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          326 LDDAFAGCEQLERIAIPSS-VTK--IPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CTTTTTTCTTCCEEEECTT-CCB--CCGGGGTTCTTCCEEEESSC
T ss_pred             hHhHhhCCCCCCEEEECcc-cCE--EhHhHhhCCCCCCEEEECCc
Confidence             234666677777776543 322  33 45666677777766654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.97  E-value=0.067  Score=44.42  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=53.9

Q ss_pred             cccCCCCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCCCCCc-hhhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFTGQIP-SEILELSNLVSLDLSGNGYSGGFLELGKTSL  172 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~g~lp-~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~  172 (219)
                      +.++..|+.+.+..+ ++  .+. ..+.+...|+.+.+..+ +. .++ ..|..+.+|+.+.+.++.++         .+
T Consensus       236 f~~~~~L~~i~lp~~-v~--~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~---------~I  301 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VT--SIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIE---------TL  301 (379)
T ss_dssp             TTTCSSCCEEEECTT-CC--EECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCC---------EE
T ss_pred             ccCCccceEEEcCCC-cc--EeCccccceeehhcccccccc-ce-eccccccccccccccccccccccc---------ee
Confidence            344555666555443 22  122 23445566666666433 32 222 24566677777777665542         22


Q ss_pred             -cHHHhcCCCCCEEeccCccCCCCCcC-hhhcCCCCCCEeeccc
Q 040237          173 -TNLVQKLTNLETLNLGRVLIFNTPIP-HNLGNLSSLRFLSLQN  214 (219)
Q Consensus       173 -p~~l~~l~~L~~L~l~~N~l~~~~~p-~~l~~l~~L~~L~ls~  214 (219)
                       ...+.++.+|+.+.+..+ +.  .+. ..|.++.+|+.+.+..
T Consensus       302 ~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          302 EPRVFMDCVKLSSVTLPTA-LK--TIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCCCCCCT
T ss_pred             hhhhhcCCCCCCEEEcCcc-cc--EEHHHHhhCCCCCCEEEECC
Confidence             234666777777777543 32  233 3466666666666543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.93  E-value=0.052  Score=45.51  Aligned_cols=105  Identities=10%  Similarity=0.159  Sum_probs=69.0

Q ss_pred             cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccc-
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSL-  172 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~-  172 (219)
                      +.++..|+.+.+.. .++  .+++ .+.++.+|+.+++..+ ++..-...|..+.+|+.+.+..+ ++         .+ 
T Consensus       284 F~~c~~L~~i~l~~-~i~--~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~---------~I~  349 (394)
T 4gt6_A          284 FMNCPALQDIEFSS-RIT--ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT---------KIP  349 (394)
T ss_dssp             TTTCTTCCEEECCT-TCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC---------BCC
T ss_pred             cccccccccccCCC-ccc--ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC---------EEh
Confidence            67789999999864 444  2544 5888999999999865 44222346889999999999765 32         33 


Q ss_pred             cHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          173 TNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       173 p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      ...|.++.+|+.+++.++...   + ..+.....|+.+.+..|.+
T Consensus       350 ~~aF~~C~~L~~i~~~~~~~~---~-~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          350 ESAFSNCTALNNIEYSGSRSQ---W-NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             GGGGTTCTTCCEEEESSCHHH---H-HTCBCCCCC----------
T ss_pred             HhHhhCCCCCCEEEECCceee---h-hhhhccCCCCEEEeCCCCE
Confidence            456889999999999887542   1 3456677888888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.45  E-value=0.052  Score=45.50  Aligned_cols=103  Identities=16%  Similarity=0.087  Sum_probs=56.3

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccc-c
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSL-T  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~-p  173 (219)
                      +..+..++.+....+.+.    ...+..+.+|+.+.+..+ +...-...|..+.+|+.+++..+ ++         .+ .
T Consensus       272 F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~---------~I~~  336 (394)
T 4fs7_A          272 FYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE---------EIGK  336 (394)
T ss_dssp             TTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC---------EECT
T ss_pred             cccccccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc---------EEhH
Confidence            455566666655443221    123556667777776544 33122234666777777776543 21         23 2


Q ss_pred             HHHhcCCCCCEEeccCccCCCCCcC-hhhcCCCCCCEeecccc
Q 040237          174 NLVQKLTNLETLNLGRVLIFNTPIP-HNLGNLSSLRFLSLQNC  215 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~~~~~p-~~l~~l~~L~~L~ls~N  215 (219)
                      ..|.++.+|+.+++..+ +..  ++ ..|.++++|+.+++..+
T Consensus       337 ~aF~~c~~L~~i~lp~~-l~~--I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          337 RSFRGCTSLSNINFPLS-LRK--IGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCE--ECTTTBTTCTTCCEEEEEGG
T ss_pred             HhccCCCCCCEEEECcc-ccE--ehHHHhhCCCCCCEEEECCC
Confidence            34666777777777654 322  32 45666777777766543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.04  E-value=0.13  Score=43.14  Aligned_cols=59  Identities=12%  Similarity=0.144  Sum_probs=27.5

Q ss_pred             cccCCCCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCCCCC-chhhhcCCCCcEEEccCC
Q 040237           95 AFSILSILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFTGQI-PSEILELSNLVSLDLSGN  158 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~g~l-p~~~~~l~~L~~L~Ls~N  158 (219)
                      +..+.+|+.+.+.++ ++  .++ ..+.++++|+.+++..+ ++ .+ ...|.++.+|+.+.+..+
T Consensus       293 F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred             ccccccccccccccc-cc--eechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc
Confidence            444555555555433 22  122 23455555555555432 33 22 224555555555555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.48  E-value=0.51  Score=38.99  Aligned_cols=107  Identities=10%  Similarity=0.040  Sum_probs=68.2

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc-
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT-  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p-  173 (219)
                      +.....++.+.+..+ +... -...+.....|+.+.+..+ ++..-...+..+.+|+.+.+..+ +         ..++ 
T Consensus       213 f~~~~~l~~i~~~~~-~~~i-~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i---------~~i~~  279 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTL-GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V---------KTVPY  279 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEE-CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C---------SEECT
T ss_pred             cccccccceeeeccc-eeEE-ccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-c---------eeccc
Confidence            344555666666443 2210 1234667778888887665 33122335677788888888654 2         1233 


Q ss_pred             HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccc
Q 040237          174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC  215 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N  215 (219)
                      ..+..+.+|+.+.+.++.+.. --...|.++.+|+.+.+..+
T Consensus       280 ~aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             TTTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCTT
T ss_pred             cccccccccccccccccccce-ehhhhhcCCCCCCEEEcCcc
Confidence            357788999999998887754 22367888999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	219
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.2 bits (113), Expect = 2e-07
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGN 158
            +P  +  L  L  LN+S +   G+IP +   L        + N
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 127 SYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLN 186
           + L+L ++   G +P  + +L  L SL++S N   G   + G          L   +   
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG---------NLQRFDVSA 297

Query: 187 L 187
            
Sbjct: 298 Y 298

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 22/129 (17%)

Query: 37  ICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAASKVPS---TLA 93
           +C+  ++ ALLQ K+ L             P        ++SW                 
Sbjct: 2   LCNPQDKQALLQIKKDL-----------GNP------TTLSSWLPTTDCCNRTWLGVLCD 44

Query: 94  AAFSILSILSGNLAGNDFRYP-EIPPEIANLSRLSYLNLSDS-FFTGQIPSEILELSNLV 151
                  + + +L+G +   P  IP  +ANL  L++L +       G IP  I +L+ L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 152 SLDLSGNGY 160
            L ++    
Sbjct: 105 YLYITHTNV 113

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 6e-06
 Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 14/132 (10%)

Query: 62  SHHNYPWSYECRPKVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFR---YPEIPP 118
           S               +  +     ++   L    S+L +L   LA  D        +  
Sbjct: 334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL--WLADCDVSDSSCSSLAA 391

Query: 119 EIANLSRLSYLNLSDSFFTGQIPSEILE-----LSNLVSLDLSGNGYSGGFLELGKTSLT 173
            +     L  L+LS++        +++E        L  L L    +S    +     L 
Sbjct: 392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR----LQ 447

Query: 174 NLVQKLTNLETL 185
            L +   +L  +
Sbjct: 448 ALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 4e-05
 Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 9/122 (7%)

Query: 99  LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQ----IPSEILELSNLVSLD 154
           L I S ++   +         +  L +   + L D   T      I S +     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 155 LSGNGYSG-GFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQ 213
           L  N     G   + +     L      ++ L+L    +           L +L  L   
Sbjct: 62  LRSNELGDVGVHCVLQ----GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 117

Query: 214 NC 215
           + 
Sbjct: 118 HL 119

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 15/93 (16%)

Query: 122 NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTN 181
           NL  L+YL L  +  +   P  +  L+ L  L  + N  S          +++L   LTN
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD---------VSSL-ANLTN 352

Query: 182 LETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
           +  L+ G   I +   P  L NL+ +  L L +
Sbjct: 353 INWLSAGHNQI-SDLTP--LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 15/83 (18%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
            L  N+         +++L++L  L  +++  +    S +  L+N+  L    N  S   
Sbjct: 313 TLYFNNISDI---SPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQIS-DL 366

Query: 165 LELGKTSLTNLVQKLTNLETLNL 187
             L           LT +  L L
Sbjct: 367 TPLA---------NLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGN 158
             A N          +ANL+ +++L+   +  +   P  +  L+ +  L L+  
Sbjct: 335 FFANNKV---SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 15/95 (15%)

Query: 121 ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLT 180
             L+      L  +  T  +     +L  + +L     G           S+  + + L 
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI---------KSIDGV-EYLN 66

Query: 181 NLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
           NL  +N     + +      L NL+ L  + + N 
Sbjct: 67  NLTQINFSNNQLTDIT---PLKNLTKLVDILMNNN 98

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 31/191 (16%), Positives = 68/191 (35%), Gaps = 42/191 (21%)

Query: 63  HHNYPWSYECRPKVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIAN 122
             N         K+ + +   A +   S +     + ++   +L GN  +       +A+
Sbjct: 183 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK---DIGTLAS 239

Query: 123 LSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG-------------------- 162
           L+ L+ L+L+++  +   P  +  L+ L  L L  N  S                     
Sbjct: 240 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297

Query: 163 ------------GFLELGKTSLTNL--VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLR 208
                        +L L   +++++  V  LT L+ L      + +     +L NL+++ 
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD---VSSLANLTNIN 354

Query: 209 FLSLQNCLVQG 219
           +LS  +  +  
Sbjct: 355 WLSAGHNQISD 365

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 5e-05
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 18/88 (20%)

Query: 122 NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTN 181
               L  LN+S++    ++P+       L  L  S N             L  + +   N
Sbjct: 282 LPPSLEELNVSNNKLI-ELPALP---PRLERLIASFN------------HLAEVPELPQN 325

Query: 182 LETLNLGRVLIFNTPIPHNLGNLSSLRF 209
           L+ L++    +     P    ++  LR 
Sbjct: 326 LKQLHVEYNPL--REFPDIPESVEDLRM 351

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 6e-05
 Identities = 21/111 (18%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
           +L G +   P++   + +   ++      SF    +  E      +  +DLS +      
Sbjct: 6   DLTGKNLH-PDVTGRLLSQGVIA-FRCPRSFMDQPLA-EHFSPFRVQHMDLSNS------ 56

Query: 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215
             +  ++L  ++ + + L+ L+L  + + + PI + L   S+L  L+L  C
Sbjct: 57  -VIEVSTLHGILSQCSKLQNLSLEGLRL-SDPIVNTLAKNSNLVRLNLSGC 105

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 12/83 (14%)

Query: 121 ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLT 180
             L+    +    S  T  +     +L  + +L   G G          T++  + Q L 
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGV---------TTIEGV-QYLN 63

Query: 181 NLETLNLGRVLIFNTPIPHNLGN 203
           NL  L L    I +     NL  
Sbjct: 64  NLIGLELKDNQITDLAPLKNLTK 86

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 15/100 (15%)

Query: 128 YLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLV----------- 176
            L+L+    T  +   + +L  +  LDLS N        L       ++           
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 177 --QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214
               L  L+ L L    +  +     L +   L  L+LQ 
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 99

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 126 LSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETL 185
           L    ++       + + +LE  ++  + LSGN             L+  +    +LE  
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIG----TEAARWLSENIASKKDLEIA 64

Query: 186 NL 187
             
Sbjct: 65  EF 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.47
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.44
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.42
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.41
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.37
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.31
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.31
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.3
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.29
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.28
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.25
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.16
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.15
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.13
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.06
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.98
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.97
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.82
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.62
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.51
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.35
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.24
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.21
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.98
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.42
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.44

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=1.1e-24  Score=178.87  Aligned_cols=166  Identities=27%  Similarity=0.443  Sum_probs=123.2

Q ss_pred             CCCHHHHHHHHHHHhcCccCCCCcccCCCCCCCccCCCCcccccCCCCCC----------------Cccc--cccc-ccc
Q 040237           37 ICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAAS----------------KVPS--TLAA-AFS   97 (219)
Q Consensus        37 ~~~~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~c~----------------~l~g--~lp~-l~~   97 (219)
                      .|.++|++||++||+++.++.      .+..|..+..++.++|. |+.|.                ++.|  .+|+ +.+
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~------~l~sW~~~~d~C~~~w~-gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~   74 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT------TLSSWLPTTDCCNRTWL-GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN   74 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG------GGTTCCTTSCTTTTCST-TEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGG
T ss_pred             CCCHHHHHHHHHHHHHCCCCC------cCCCCCCCCCCCCCcCC-CeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhc
Confidence            599999999999999998753      25667654432444799 77772                3334  3556 777


Q ss_pred             CCCCCEeecCC-CCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHH
Q 040237           98 ILSILSGNLAG-NDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLV  176 (219)
Q Consensus        98 l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l  176 (219)
                      +++|++|++++ |++.|. +|+.++++++|++|++++|++.+..|..+..+.+|+.++++.|.+.        ..+|..+
T Consensus        75 L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~--------~~~p~~l  145 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS--------GTLPPSI  145 (313)
T ss_dssp             CTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE--------SCCCGGG
T ss_pred             Cccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhccccccccccc--------ccCchhh
Confidence            77777777775 677765 7777777777777777777777767777777777777777777763        3567778


Q ss_pred             hcCCCCCEEeccCccCCCCCcChhhcCCCCC-CEeecccccccC
Q 040237          177 QKLTNLETLNLGRVLIFNTPIPHNLGNLSSL-RFLSLQNCLVQG  219 (219)
Q Consensus       177 ~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L-~~L~ls~N~l~G  219 (219)
                      +++++++++++++|.+.+ .+|..+..+..+ +.+++++|+++|
T Consensus       146 ~~l~~L~~l~l~~n~l~~-~ip~~~~~l~~l~~~l~~~~n~l~~  188 (313)
T d1ogqa_         146 SSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             GGCTTCCEEECCSSCCEE-ECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             ccCcccceeecccccccc-ccccccccccccccccccccccccc
Confidence            888888888888888887 788888777765 778888887653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.69  E-value=2.4e-17  Score=134.52  Aligned_cols=136  Identities=21%  Similarity=0.401  Sum_probs=116.8

Q ss_pred             CcccccCCCCCC--Cccccccc-cccCCCCCEeecCCCCCCCC-CCchhhcCCCCCCEEEccc-CCCCCCCchhhhcCCC
Q 040237           75 KVASWKQGEAAS--KVPSTLAA-AFSILSILSGNLAGNDFRYP-EIPPEIANLSRLSYLNLSD-SFFTGQIPSEILELSN  149 (219)
Q Consensus        75 ~~~~W~~~~~c~--~l~g~lp~-l~~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~L~Ls~-n~l~g~lp~~~~~l~~  149 (219)
                      ...+|..+.+|.  ...|.... -..-.++++|+++++++.+. .+|+.++++++|++|++++ |.++|.+|+.++++++
T Consensus        23 ~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~  102 (313)
T d1ogqa_          23 TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ  102 (313)
T ss_dssp             GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTT
T ss_pred             cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccc
Confidence            578897665554  36776655 44455799999999999873 2789999999999999997 8999999999999999


Q ss_pred             CcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          150 LVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       150 L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      |++|++++|++++        ..+..+..+.+|++++++.|.+.+ .+|..+.+++.++++++++|.++|
T Consensus       103 L~~L~Ls~N~l~~--------~~~~~~~~~~~L~~l~l~~N~~~~-~~p~~l~~l~~L~~l~l~~n~l~~  163 (313)
T d1ogqa_         103 LHYLYITHTNVSG--------AIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISG  163 (313)
T ss_dssp             CSEEEEEEECCEE--------ECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             cchhhhccccccc--------cccccccchhhhcccccccccccc-cCchhhccCcccceeecccccccc
Confidence            9999999999954        556778889999999999999998 899999999999999999998764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=9.9e-17  Score=122.32  Aligned_cols=131  Identities=21%  Similarity=0.158  Sum_probs=107.7

Q ss_pred             CcccccCCCCCCC--ccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCc
Q 040237           75 KVASWKQGEAASK--VPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLV  151 (219)
Q Consensus        75 ~~~~W~~~~~c~~--l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~  151 (219)
                      +.|+|. .++|.+  ++ .+|+ +.  +++++|+|++|.++....+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus         6 C~C~~~-~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_           6 CHCEGT-TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             SEEETT-EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CEEcCC-EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccc
Confidence            556677 677843  33 4565 43  68999999999998641345688999999999999999988888899999999


Q ss_pred             EEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          152 SLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       152 ~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +|++++|++++        ..+..|.++++|++|+|++|++++ ..|..|..+++|+++++++|.+.
T Consensus        82 ~L~Ls~N~l~~--------l~~~~F~~l~~L~~L~L~~N~l~~-i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          82 ELQLGENKIKE--------ISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSCCCCE--------ECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBC
T ss_pred             eeeeccccccc--------cCHHHHhCCCcccccccCCccccc-cCHHHhcCCcccccccccccccc
Confidence            99999999853        334568899999999999999987 55677889999999999999875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.1e-15  Score=108.69  Aligned_cols=103  Identities=22%  Similarity=0.224  Sum_probs=73.8

Q ss_pred             CEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCC
Q 040237          102 LSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTN  181 (219)
Q Consensus       102 ~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~  181 (219)
                      ++|++++|+++  .++ .+..+++|++|++++|.++ .+|+.++.+++|+.|++++|.+++         +| .+..+++
T Consensus         1 R~L~Ls~n~l~--~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~---------l~-~~~~l~~   66 (124)
T d1dcea3           1 RVLHLAHKDLT--VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN---------VD-GVANLPR   66 (124)
T ss_dssp             SEEECTTSCCS--SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC---------CG-GGTTCSS
T ss_pred             CEEEcCCCCCC--CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc---------cC-ccccccc
Confidence            46778888877  344 4777788888888888887 677777778888888888887742         33 3677778


Q ss_pred             CCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          182 LETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       182 L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      |++|++++|+++.......+..+++|++|++++|+++
T Consensus        67 L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          67 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            8888888888765112245677778888888887764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.1e-14  Score=106.46  Aligned_cols=109  Identities=21%  Similarity=0.216  Sum_probs=74.1

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc-
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT-  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p-  173 (219)
                      +.+...+++|++++|+++  .++..+..+++|++|++++|.++ .++ .+..+++|++|++++|+++         .++ 
T Consensus        14 ~~n~~~lr~L~L~~n~I~--~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~---------~l~~   80 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC---------RIGE   80 (162)
T ss_dssp             EECTTSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC---------EECS
T ss_pred             ccCcCcCcEEECCCCCCC--ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc---------CCCc
Confidence            556667777777777777  36655566777777777777776 443 4667777777777777764         233 


Q ss_pred             HHHhcCCCCCEEeccCccCCCCCcC--hhhcCCCCCCEeeccccccc
Q 040237          174 NLVQKLTNLETLNLGRVLIFNTPIP--HNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~~~~~p--~~l~~l~~L~~L~ls~N~l~  218 (219)
                      ..+..+++|++|++++|+++.  ++  ..+..+++|++|++++|+++
T Consensus        81 ~~~~~l~~L~~L~L~~N~i~~--~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          81 GLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CHHHHCTTCCEEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccccccccccceeccccccc--cccccccccccccchhhcCCCccc
Confidence            334567777777777777754  33  35667777777777777654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.3e-13  Score=110.66  Aligned_cols=111  Identities=19%  Similarity=0.116  Sum_probs=63.9

Q ss_pred             CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHh
Q 040237           98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQ  177 (219)
Q Consensus        98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~  177 (219)
                      ..+|+.+++++|+++.. .+..+..+++|++|++++|++++..+..+..+++|+++++++|+++        +..|..+.
T Consensus       128 ~~~L~~l~l~~N~l~~i-~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~--------~i~~~~f~  198 (284)
T d1ozna_         128 LAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA--------HVHPHAFR  198 (284)
T ss_dssp             CTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------EECTTTTT
T ss_pred             hcccchhhhcccccccc-ChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc--------ccChhHhh
Confidence            33344444444444321 1223444444555555555544333334444555555555555442        23466777


Q ss_pred             cCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          178 KLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       178 ~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      .+++|++|++++|.+.+ ..|..+..+++|++|++++|++.
T Consensus       199 ~l~~L~~L~l~~N~i~~-~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         199 DLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhhccccccccccccc-ccccccccccccCEEEecCCCCC
Confidence            78888888888888877 55677778888888888888765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.46  E-value=1e-13  Score=105.18  Aligned_cols=106  Identities=23%  Similarity=0.249  Sum_probs=90.9

Q ss_pred             CCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCC-chhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcC
Q 040237          101 ILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQI-PSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL  179 (219)
Q Consensus       101 L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~l-p~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l  179 (219)
                      .+.++.++++++  .+|+.+.  +++++|++++|++++.+ +..|..+++|+.|++++|.+++        ..+..+..+
T Consensus        10 ~~~v~Cs~~~L~--~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~--------~~~~~~~~~   77 (192)
T d1w8aa_          10 GTTVDCTGRGLK--EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--------IEPNAFEGA   77 (192)
T ss_dssp             TTEEECTTSCCS--SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC--------BCTTTTTTC
T ss_pred             CCEEEEeCCCcC--ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccc--------ccccccccc
Confidence            467999999999  5888764  78999999999998655 4467899999999999999853        456778889


Q ss_pred             CCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          180 TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       180 ~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      ++|++|++++|+++. ..|..|.++++|++|++++|+|++
T Consensus        78 ~~L~~L~Ls~N~l~~-l~~~~F~~l~~L~~L~L~~N~l~~  116 (192)
T d1w8aa_          78 SHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             TTCCEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCE
T ss_pred             cccceeeeccccccc-cCHHHHhCCCcccccccCCccccc
Confidence            999999999999987 556778999999999999999863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=3.5e-13  Score=95.37  Aligned_cols=109  Identities=23%  Similarity=0.260  Sum_probs=87.9

Q ss_pred             cccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCc
Q 040237           91 TLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT  170 (219)
Q Consensus        91 ~lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~  170 (219)
                      .++.+..+++|++|++++|.++  .+|+.+..+++|++|++++|.++ .+| .+..+++|+.+++++|+++..       
T Consensus        12 ~l~~l~~l~~L~~L~ls~N~l~--~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~-------   80 (124)
T d1dcea3          12 VLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQS-------   80 (124)
T ss_dssp             SCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSS-------
T ss_pred             CCcccccCCCCCEEECCCCccC--cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCC-------
Confidence            3445888999999999999998  58888999999999999999999 566 589999999999999998631       


Q ss_pred             cccHHHhcCCCCCEEeccCccCCCC-CcC-hhhcCCCCCCEe
Q 040237          171 SLTNLVQKLTNLETLNLGRVLIFNT-PIP-HNLGNLSSLRFL  210 (219)
Q Consensus       171 ~~p~~l~~l~~L~~L~l~~N~l~~~-~~p-~~l~~l~~L~~L  210 (219)
                      .....++.+++|+++++++|.+++. ..+ .....+|+|+.+
T Consensus        81 ~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          81 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            1224578899999999999998651 123 334457788765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.7e-13  Score=107.24  Aligned_cols=115  Identities=23%  Similarity=0.219  Sum_probs=100.4

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +.++++|++|++++|.+... .+..+...++|+.+++++|.+++..+..+..+++|+.|++++|++++        ..+.
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~--------l~~~  171 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--------VPER  171 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--------ECTT
T ss_pred             hcccccCCEEecCCcccccc-cccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc--------cchh
Confidence            88999999999999999854 45568889999999999999995555678889999999999999843        3456


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      .+..+++|+++++++|++++ ..|..|..+++|++|++++|++++
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             hhccccccchhhhhhccccc-cChhHhhhhhhccccccccccccc
Confidence            77899999999999999988 778999999999999999999864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=9.1e-13  Score=104.73  Aligned_cols=116  Identities=22%  Similarity=0.211  Sum_probs=74.4

Q ss_pred             cccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhh------------------------hc
Q 040237           91 TLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEI------------------------LE  146 (219)
Q Consensus        91 ~lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~------------------------~~  146 (219)
                      .++.+..+++|++|++++|+++.  ++..+..+++|++|++++|.+....+..+                        ..
T Consensus        69 ~l~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~  146 (266)
T d1p9ag_          69 KLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP  146 (266)
T ss_dssp             EEECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             ccccccccccccccccccccccc--cccccccccccccccccccccceeeccccccccccccccccccccceeccccccc
Confidence            34445566677777777776663  44555556666666666555543333333                        44


Q ss_pred             CCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          147 LSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       147 l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +++++.+++++|++++        ..+..+..+++|++|++++|+++.  +|+.+..+++|+.|++++|++.
T Consensus       147 l~~l~~l~l~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~L~~--lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         147 TPKLEKLSLANNNLTE--------LPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTCCEEECTTSCCSC--------CCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccchhcccccccccc--------cCccccccccccceeecccCCCcc--cChhHCCCCCCCEEEecCCCCC
Confidence            4555555555555532        234457778888888888888854  7888888888888888888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.2e-13  Score=105.00  Aligned_cols=128  Identities=22%  Similarity=0.154  Sum_probs=100.3

Q ss_pred             CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237           86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF  164 (219)
Q Consensus        86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~  164 (219)
                      +.+++..+. +.++++|++|++++|+++  .+|. +..+++|++|++++|+++ ..+..+..+++|+++++++|.+.+..
T Consensus        41 N~i~~l~~~~f~~l~~L~~L~L~~N~l~--~l~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~  116 (266)
T d1p9ag_          41 NLLYTFSLATLMPYTRLTQLNLDRAELT--KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLP  116 (266)
T ss_dssp             SCCSEEEGGGGTTCTTCCEEECTTSCCC--EEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCC
T ss_pred             CcCCCcCHHHhhcccccccccccccccc--cccc-cccccccccccccccccc-ccccccccccccccccccccccceee
Confidence            344443334 899999999999999998  3654 578999999999999998 56778889999999999999876532


Q ss_pred             cccC---------------Cccc-cHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          165 LELG---------------KTSL-TNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       165 ~~~~---------------~~~~-p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +...               ...+ +..+..+++++.+++++|++++ ..+..+..+++|++|++++|+|+
T Consensus       117 ~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccccccccccccceeccccccccccchhcccccccccc-cCccccccccccceeecccCCCc
Confidence            2110               1123 3345678899999999999988 55677889999999999999885

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.3e-12  Score=94.65  Aligned_cols=89  Identities=17%  Similarity=0.079  Sum_probs=54.2

Q ss_pred             cccCCCCCEeecCCCC-CCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237           95 AFSILSILSGNLAGND-FRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p  173 (219)
                      +..++++++|++++|+ ++.. -+..|.++++|+.|++++|+++..-|..|..+++|++|+|++|+++         .+|
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~---------~l~   96 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE---------SLS   96 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS---------CCC
T ss_pred             ccCccccCeeecCCCcccccc-CchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc---------ccC
Confidence            6666677777776543 5532 2345666777777777777776444555667777777777777764         233


Q ss_pred             HHHhcCCCCCEEeccCccCC
Q 040237          174 NLVQKLTNLETLNLGRVLIF  193 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N~l~  193 (219)
                      .......+|++|++++|.+.
T Consensus        97 ~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          97 WKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             STTTCSCCCCEEECCSSCCC
T ss_pred             hhhhccccccccccCCCccc
Confidence            33333345677777777663

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=1.8e-11  Score=92.97  Aligned_cols=107  Identities=27%  Similarity=0.365  Sum_probs=63.7

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +.++++|++|++++|.+..  ++ .+..++.|++++++++.... + ..+..+++|+.+++++|++.         .+ +
T Consensus        80 l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~---------~~-~  144 (199)
T d2omxa2          80 LKNLTKLVDILMNNNQIAD--IT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLELSSNTIS---------DI-S  144 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC---------CC-G
T ss_pred             ccCCccccccccccccccc--cc-cccccccccccccccccccc-c-cccchhhhhHHhhhhhhhhc---------cc-c
Confidence            4444444444444444431  22 24444555555555444442 1 12445555555555555542         22 3


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      .+..++++++|++.+|++++  ++ .+.++++|++|++++|+++.
T Consensus       145 ~l~~~~~L~~L~l~~n~l~~--l~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         145 ALSGLTSLQQLNFSSNQVTD--LK-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccccccccccC--Cc-cccCCCCCCEEECCCCCCCC
Confidence            46778888899998888866  43 47889999999999998763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=3.7e-14  Score=108.52  Aligned_cols=111  Identities=23%  Similarity=0.234  Sum_probs=92.5

Q ss_pred             ccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCc
Q 040237           92 LAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT  170 (219)
Q Consensus        92 lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~  170 (219)
                      ++. +..+++|++|++++|+++  .++ .+..+++|++|++++|.++ .+|.....+++|+.|++++|.++         
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~--~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~---------  106 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE--KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA---------  106 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES--CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC---------
T ss_pred             hhhHHhcccccceeECcccCCC--Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc---------
Confidence            344 788999999999999998  365 5889999999999999998 67766666778999999999984         


Q ss_pred             cccHHHhcCCCCCEEeccCccCCCCCcC--hhhcCCCCCCEeeccccccc
Q 040237          171 SLTNLVQKLTNLETLNLGRVLIFNTPIP--HNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       171 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~l~~l~~L~~L~ls~N~l~  218 (219)
                      .+ +.+..+++|++|++++|.++.  ++  ..+..+++|++|++++|+++
T Consensus       107 ~l-~~~~~l~~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         107 SL-SGIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CH-HHHHHHHHSSEEEESEEECCC--HHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cc-ccccccccccccccccchhcc--ccccccccCCCccceeecCCCccc
Confidence            23 347788999999999999966  44  46889999999999999763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.6e-12  Score=94.17  Aligned_cols=109  Identities=17%  Similarity=0.176  Sum_probs=88.6

Q ss_pred             ccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC
Q 040237           90 STLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG  168 (219)
Q Consensus        90 g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~  168 (219)
                      ..++. +..+++|+.|++++|.++  .++ .+..+++|++|++++|+++...+..+..+++|+.|++++|+++.      
T Consensus        31 ~~i~~~~~~l~~L~~L~Ls~N~i~--~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~------  101 (162)
T d1a9na_          31 PVIENLGATLDQFDAIDFSDNEIR--KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE------  101 (162)
T ss_dssp             CSCCCGGGGTTCCSEEECCSSCCC--EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC------
T ss_pred             CccCccccccccCCEEECCCCCCC--ccC-CcccCcchhhhhcccccccCCCccccccccccccceeccccccc------
Confidence            34455 577899999999999998  354 58899999999999999994444456789999999999999853      


Q ss_pred             Ccccc--HHHhcCCCCCEEeccCccCCCCCcC----hhhcCCCCCCEeec
Q 040237          169 KTSLT--NLVQKLTNLETLNLGRVLIFNTPIP----HNLGNLSSLRFLSL  212 (219)
Q Consensus       169 ~~~~p--~~l~~l~~L~~L~l~~N~l~~~~~p----~~l~~l~~L~~L~l  212 (219)
                         ++  ..+..+++|+++++++|.++.  .|    ..+..+++|++||-
T Consensus       102 ---~~~l~~l~~l~~L~~L~l~~N~i~~--~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         102 ---LGDLDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             ---GGGGGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETT
T ss_pred             ---cccccccccccccchhhcCCCcccc--ccchHHHHHHHCCCcCeeCC
Confidence               22  457889999999999999965  44    35788999999883

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=1.6e-11  Score=93.26  Aligned_cols=110  Identities=25%  Similarity=0.374  Sum_probs=87.4

Q ss_pred             ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcc
Q 040237           92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTS  171 (219)
Q Consensus        92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~  171 (219)
                      +..+..+++|++|++++|.+++  +++ +.++++|++|++++|.+. .++ .+..+++|+.+++++|....         
T Consensus        55 l~~l~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~---------  120 (199)
T d2omxa2          55 IDGVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD---------  120 (199)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC---------
T ss_pred             ccccccCCCcCcCccccccccC--ccc-ccCCcccccccccccccc-ccc-cccccccccccccccccccc---------
Confidence            3447778899999999999884  444 888999999999999887 555 47888999999999887632         


Q ss_pred             ccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       172 ~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                       ...+..+++|+.|++++|.+..  ++ .+..+++|+.|++++|++++
T Consensus       121 -~~~~~~l~~L~~L~l~~n~l~~--~~-~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         121 -IDPLKNLTNLNRLELSSNTISD--IS-ALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             -CGGGTTCTTCSEEECCSSCCCC--CG-GGTTCTTCSEEECCSSCCCC
T ss_pred             -ccccchhhhhHHhhhhhhhhcc--cc-cccccccccccccccccccC
Confidence             2346788899999999998855  43 57888999999999998763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.30  E-value=9.5e-12  Score=100.26  Aligned_cols=108  Identities=19%  Similarity=0.103  Sum_probs=62.9

Q ss_pred             CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHh
Q 040237           98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQ  177 (219)
Q Consensus        98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~  177 (219)
                      .+++++|++++|..... .+..+..++.+++|++++|.+.+..+..+..+++|++|++++|+++         .+|..+.
T Consensus       170 ~~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~---------~lp~~l~  239 (305)
T d1xkua_         170 PPSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV---------KVPGGLA  239 (305)
T ss_dssp             CTTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS---------SCCTTTT
T ss_pred             CCccCEEECCCCcCCCC-ChhHhhccccccccccccccccccccccccccccceeeeccccccc---------ccccccc
Confidence            34555555555555543 4455666666666666666666544555566666666666666653         3555566


Q ss_pred             cCCCCCEEeccCccCCCCCcCh-------hhcCCCCCCEeecccccc
Q 040237          178 KLTNLETLNLGRVLIFNTPIPH-------NLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       178 ~l~~L~~L~l~~N~l~~~~~p~-------~l~~l~~L~~L~ls~N~l  217 (219)
                      .+++|++|++++|+++.  ++.       ....+.+|+.|++++|++
T Consensus       240 ~l~~L~~L~Ls~N~i~~--i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         240 DHKYIQVVYLHNNNISA--IGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             TCSSCCEEECCSSCCCC--CCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cccCCCEEECCCCccCc--cChhhccCcchhcccCCCCEEECCCCcC
Confidence            66666666666666654  221       223445666666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=1.9e-11  Score=93.77  Aligned_cols=115  Identities=29%  Similarity=0.350  Sum_probs=71.6

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC------
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG------  168 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~------  168 (219)
                      +..+++|++|++++|.+++  ++ .+..+++|++|++++|+++ .+| .+..+++|+.+++++|.+.. ++.+.      
T Consensus        64 l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~-~~~l~~l~~l~  137 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLE  137 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCC
T ss_pred             HhhCCCCCEEeCCCccccC--cc-ccccCcccccccccccccc-ccc-cccccccccccccccccccc-ccccccccccc
Confidence            5566667777777776663  33 3566667777777777666 344 35666666666666665432 11100      


Q ss_pred             -------CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          169 -------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       169 -------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                             .-.-+..+..+++|+++++++|++++  ++ .+.++++|++|++++|+++
T Consensus       138 ~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~--i~-~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISD--IV-PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccccccccccc--cc-cccCCCCCCEEECCCCCCC
Confidence                   00112345667788888888888865  43 3777888888888888775

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.28  E-value=3.3e-11  Score=92.37  Aligned_cols=113  Identities=27%  Similarity=0.245  Sum_probs=75.4

Q ss_pred             cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC--------
Q 040237           97 SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG--------  168 (219)
Q Consensus        97 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~--------  168 (219)
                      .+.+|++|++++|.++.  ++ .+..+++|++|++++|++++ ++ .+..+++|++|++++|++++ ++.+.        
T Consensus        44 ~L~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LSSLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCC--ch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-ccccccccccccc
Confidence            46689999999999984  44 48889999999999999994 55 46889999999999999864 11100        


Q ss_pred             -----CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          169 -----KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       169 -----~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                           ...-...+..+++++.+++++|.+++   +..+..+++|+++++++|+++
T Consensus       118 ~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~---~~~~~~l~~L~~l~l~~n~l~  169 (210)
T d1h6ta2         118 SLEHNGISDINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQIS  169 (210)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccccccccc---ccccccccccccccccccccc
Confidence                 00011223344444444444444433   233555677777777777665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.25  E-value=1.5e-11  Score=99.10  Aligned_cols=110  Identities=20%  Similarity=0.238  Sum_probs=96.8

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN  174 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~  174 (219)
                      +..+++|+++++++|.+.  .+|..+  +++|++|++++|...+..+..+..++.++.|++++|.+++        ..+.
T Consensus       146 ~~~l~~L~~l~l~~n~l~--~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~--------~~~~  213 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNIT--TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA--------VDNG  213 (305)
T ss_dssp             GGGCTTCCEEECCSSCCC--SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE--------ECTT
T ss_pred             cccccccCccccccCCcc--ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccc--------cccc
Confidence            778899999999999988  466543  6899999999999998888899999999999999999853        3456


Q ss_pred             HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      .+..+++|++|++++|.++.  +|..+.++++|++|++++|+|+
T Consensus       214 ~~~~l~~L~~L~L~~N~L~~--lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         214 SLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccccceeeecccccccc--cccccccccCCCEEECCCCccC
Confidence            78889999999999999965  8889999999999999999986

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=1.2e-10  Score=95.90  Aligned_cols=108  Identities=25%  Similarity=0.303  Sum_probs=68.7

Q ss_pred             cccccCCCCCEeecCCCCCCCCC-------------------CchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEE
Q 040237           93 AAAFSILSILSGNLAGNDFRYPE-------------------IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSL  153 (219)
Q Consensus        93 p~l~~l~~L~~L~L~~n~l~~~~-------------------~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L  153 (219)
                      +++..+++|++++++++.+.+..                   -...+..++++++|++++|++++ ++ .+..+++|+.|
T Consensus       257 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~-l~-~l~~l~~L~~L  334 (384)
T d2omza2         257 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-IS-PVSSLTKLQRL  334 (384)
T ss_dssp             GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC-CG-GGGGCTTCCEE
T ss_pred             CcccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCC-Cc-ccccCCCCCEE
Confidence            34666677777777777665320                   01234555667777777777764 33 26667777777


Q ss_pred             EccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccc
Q 040237          154 DLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC  215 (219)
Q Consensus       154 ~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N  215 (219)
                      ++++|++++         ++ .++++++|++|++++|++++  +++ +.++++|+.|++++|
T Consensus       335 ~L~~n~l~~---------l~-~l~~l~~L~~L~l~~N~l~~--l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         335 FFANNKVSD---------VS-SLANLTNINWLSAGHNQISD--LTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCCC---------CG-GGGGCTTCCEEECCSSCCCB--CGG-GTTCTTCSEEECCCE
T ss_pred             ECCCCCCCC---------Ch-hHcCCCCCCEEECCCCcCCC--Chh-hccCCCCCEeeCCCC
Confidence            777777642         22 46677777777777777766  332 677777777777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-10  Score=85.47  Aligned_cols=107  Identities=13%  Similarity=0.057  Sum_probs=86.5

Q ss_pred             CCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCC-CCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhc
Q 040237          100 SILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSF-FTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK  178 (219)
Q Consensus       100 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~  178 (219)
                      ....++.+++++.  .+|..+..+++|++|++++|+ ++..-+..|..+++|+.|++++|+++.        --+..+..
T Consensus         9 ~~~~l~c~~~~~~--~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~--------i~~~~f~~   78 (156)
T d2ifga3           9 GSSGLRCTRDGAL--DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--------VAPDAFHF   78 (156)
T ss_dssp             SSSCEECCSSCCC--TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--------ECTTGGGS
T ss_pred             CCCeEEecCCCCc--cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCC--------cccccccc
Confidence            3455778888877  478889999999999998764 774445578999999999999999842        33567899


Q ss_pred             CCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       179 l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +++|++|++++|+++.  +|.......+|++|++++|++.
T Consensus        79 l~~L~~L~Ls~N~l~~--l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          79 TPRLSRLNLSFNALES--LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSCCCEEECCSSCCSC--CCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccccceeccCCCCcc--cChhhhccccccccccCCCccc
Confidence            9999999999999966  6665555568999999999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.13  E-value=3.6e-10  Score=92.89  Aligned_cols=112  Identities=25%  Similarity=0.359  Sum_probs=86.3

Q ss_pred             ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCc--------------------hhhhcCCCCc
Q 040237           92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIP--------------------SEILELSNLV  151 (219)
Q Consensus        92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp--------------------~~~~~l~~L~  151 (219)
                      ++.+..+++|+.+++++|.+++  ++ .+..+++|++++++++.+.+..+                    ..+..+++++
T Consensus       234 ~~~l~~l~~L~~L~l~~n~l~~--~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~  310 (384)
T d2omza2         234 IGTLASLTNLTDLDLANNQISN--LA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT  310 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCC--CG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCS
T ss_pred             cchhhcccccchhccccCccCC--CC-cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccC
Confidence            4447889999999999999985  44 37889999999999988874221                    2244556666


Q ss_pred             EEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237          152 SLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG  219 (219)
Q Consensus       152 ~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G  219 (219)
                      .+++++|++++         ++ .+..+++|++|++++|.+++  ++ .+.++++|++|++++|++++
T Consensus       311 ~L~ls~n~l~~---------l~-~l~~l~~L~~L~L~~n~l~~--l~-~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         311 YLTLYFNNISD---------IS-PVSSLTKLQRLFFANNKVSD--VS-SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             EEECCSSCCSC---------CG-GGGGCTTCCEEECCSSCCCC--CG-GGGGCTTCCEEECCSSCCCB
T ss_pred             eEECCCCCCCC---------Cc-ccccCCCCCEEECCCCCCCC--Ch-hHcCCCCCCEEECCCCcCCC
Confidence            66666666643         22 37789999999999999976  54 68899999999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=1.4e-09  Score=83.75  Aligned_cols=40  Identities=28%  Similarity=0.336  Sum_probs=23.3

Q ss_pred             HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       176 l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      ++++++|+.|++++|++++  ++. +.++++|++|++++|+++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~--l~~-l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCC
T ss_pred             hcccccceecccCCCccCC--Chh-hcCCCCCCEEECcCCcCC
Confidence            4556666666666666644  332 555666666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=2.1e-11  Score=92.90  Aligned_cols=90  Identities=23%  Similarity=0.282  Sum_probs=76.5

Q ss_pred             CCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCC
Q 040237          115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN  194 (219)
Q Consensus       115 ~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~  194 (219)
                      .+|..+..+++|++|++++|+++ .++ .+..+++|+.|++++|.++         .+|.....+++|++|++++|.++.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~---------~i~~~~~~~~~L~~L~l~~N~i~~  107 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK---------KIENLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC---------SCSSHHHHHHHCCEEECSEEECCC
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc---------cccccccccccccccccccccccc
Confidence            47788999999999999999998 665 5889999999999999984         355555556689999999999976


Q ss_pred             CCcChhhcCCCCCCEeeccccccc
Q 040237          195 TPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       195 ~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                        + +.+..+++|++|++++|+++
T Consensus       108 --l-~~~~~l~~L~~L~L~~N~i~  128 (198)
T d1m9la_         108 --L-SGIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             --H-HHHHHHHHSSEEEESEEECC
T ss_pred             --c-ccccccccccccccccchhc
Confidence              4 45788899999999999886

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.97  E-value=2.6e-09  Score=82.19  Aligned_cols=108  Identities=24%  Similarity=0.321  Sum_probs=81.2

Q ss_pred             ccccccCCCCCEeecCCCCCCCC-------------------CCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcE
Q 040237           92 LAAAFSILSILSGNLAGNDFRYP-------------------EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS  152 (219)
Q Consensus        92 lp~l~~l~~L~~L~L~~n~l~~~-------------------~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~  152 (219)
                      ++.+..+++|++++++++...+.                   .....+..+++|++|++++|.+.+. + .+..+++|+.
T Consensus       100 i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~  177 (227)
T d1h6ua2         100 VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-T-PLANLSKLTT  177 (227)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCE
T ss_pred             cccccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc-h-hhccccccee
Confidence            44466677777777776654421                   0112356678899999999988743 3 3789999999


Q ss_pred             EEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccc
Q 040237          153 LDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN  214 (219)
Q Consensus       153 L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~  214 (219)
                      |++++|++++         ++ .+.++++|++|++++|++++  ++ .+.++++|+.|++++
T Consensus       178 L~Ls~n~l~~---------l~-~l~~l~~L~~L~Ls~N~lt~--i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         178 LKADDNKISD---------IS-PLASLPNLIEVHLKNNQISD--VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             EECCSSCCCC---------CG-GGGGCTTCCEEECTTSCCCB--CG-GGTTCTTCCEEEEEE
T ss_pred             cccCCCccCC---------Ch-hhcCCCCCCEEECcCCcCCC--Cc-ccccCCCCCEEEeeC
Confidence            9999999853         33 37889999999999999976  55 388999999999974

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.82  E-value=1.3e-08  Score=81.95  Aligned_cols=96  Identities=22%  Similarity=0.233  Sum_probs=70.4

Q ss_pred             CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhc
Q 040237           99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK  178 (219)
Q Consensus        99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~  178 (219)
                      .++++|++++++++  .+|+.   +++|++|++++|+++ .+|..   +.+|+.|++++|+++.         ++.   -
T Consensus        38 ~~l~~LdLs~~~L~--~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~---------l~~---l   96 (353)
T d1jl5a_          38 RQAHELELNNLGLS--SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA---------LSD---L   96 (353)
T ss_dssp             HTCSEEECTTSCCS--CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC---------CCS---C
T ss_pred             cCCCEEEeCCCCCC--CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch---------hhh---h
Confidence            46788899888887  47753   467888899988888 77764   3578888888888752         221   1


Q ss_pred             CCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237          179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       179 l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      .+.|++|++++|.+..  +|. ++.+++|++|++++|.++
T Consensus        97 p~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_          97 PPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCS
T ss_pred             cccccccccccccccc--ccc-hhhhccceeecccccccc
Confidence            1358888888888855  664 567888888888887664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=8.6e-09  Score=79.65  Aligned_cols=128  Identities=16%  Similarity=0.133  Sum_probs=88.5

Q ss_pred             cccccCCCCCC--Cccccccc-cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCch-hhhcCCCC
Q 040237           76 VASWKQGEAAS--KVPSTLAA-AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPS-EILELSNL  150 (219)
Q Consensus        76 ~~~W~~~~~c~--~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L  150 (219)
                      -|... .+.|.  +++ .+|+ +.  +++++|++++|+++.  +|. .+.++++|++|++++|.+...+|. .+..++.+
T Consensus         7 ~C~~~-~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l   80 (242)
T d1xwdc1           7 HCSNR-VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   80 (242)
T ss_dssp             EECSS-EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCE--ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTC
T ss_pred             CCcCC-EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCc--cChhHhhccchhhhhhhccccccceeecccccccccc
Confidence            34443 55663  333 5665 32  578999999999984  665 688999999999999998765544 57789999


Q ss_pred             cEEEccC-CCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237          151 VSLDLSG-NGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       151 ~~L~Ls~-N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      +++.+.. |.+.        ...+..+..+++|+++++++|.+........+..+..+..+...++++
T Consensus        81 ~~l~~~~~n~l~--------~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l  140 (242)
T d1xwdc1          81 HEIRIEKANNLL--------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI  140 (242)
T ss_dssp             CEEEEECCTTCC--------EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTC
T ss_pred             cccccccccccc--------ccccccccccccccccccchhhhccccccccccccccccccccccccc
Confidence            9998765 5552        234556788999999999999986512223344455555555555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.8e-09  Score=90.07  Aligned_cols=115  Identities=19%  Similarity=0.224  Sum_probs=73.0

Q ss_pred             CCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCC----CCchhhhcCCCCcEEEccCCCCCCCccccCCccccHH
Q 040237          100 SILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTG----QIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL  175 (219)
Q Consensus       100 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g----~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~  175 (219)
                      .|++||++.|+++...+.+-+..++++++|+|++|.++.    .++..+..+++|++|++++|.++..    +...+...
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~----~~~~l~~~   78 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV----GVHCVLQG   78 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH----HHHHHHHT
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChH----HHHHHHHH
Confidence            577888888887743234456667888888888887762    2344566778888888888876310    00011222


Q ss_pred             Hhc-CCCCCEEeccCccCCCCC---cChhhcCCCCCCEeeccccccc
Q 040237          176 VQK-LTNLETLNLGRVLIFNTP---IPHNLGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       176 l~~-l~~L~~L~l~~N~l~~~~---~p~~l~~l~~L~~L~ls~N~l~  218 (219)
                      +.. ..+|++|++++|++++..   ++..+..+++|++|++++|.++
T Consensus        79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            221 246888888888876511   3455667788888888888763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.5e-08  Score=79.37  Aligned_cols=119  Identities=27%  Similarity=0.293  Sum_probs=74.0

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccC-CCCCC-CchhhhcCCCCcEEEccCCC-CCCC-c------
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDS-FFTGQ-IPSEILELSNLVSLDLSGNG-YSGG-F------  164 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~g~-lp~~~~~l~~L~~L~Ls~N~-l~g~-~------  164 (219)
                      +..+++|++|+++++.+... .+..+..+++|++|+++++ .++.. +..-...+++|++|+++++. ++.. +      
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~  145 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  145 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             HHhCCCcccccccccCCCcH-HHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcc
Confidence            66777888888888877654 5666777788888888774 44421 12223457777777777642 2211 0      


Q ss_pred             --cccC------------CccccHHHhcCCCCCEEeccCc-cCCCCCcChhhcCCCCCCEeecccc
Q 040237          165 --LELG------------KTSLTNLVQKLTNLETLNLGRV-LIFNTPIPHNLGNLSSLRFLSLQNC  215 (219)
Q Consensus       165 --~~~~------------~~~~p~~l~~l~~L~~L~l~~N-~l~~~~~p~~l~~l~~L~~L~ls~N  215 (219)
                        +...            ...+.....++++|++|++++| .+++ .....+.++++|++|++++|
T Consensus       146 ~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd-~~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         146 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTC
T ss_pred             cccccchhhhcccccccccccccccccccccccccccccccCCCc-hhhhhhcccCcCCEEECCCC
Confidence              0000            0112333456788888888875 4665 55667777888888888874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=9.2e-08  Score=73.62  Aligned_cols=18  Identities=11%  Similarity=0.159  Sum_probs=9.9

Q ss_pred             hcCCCCCCEeeccccccc
Q 040237          201 LGNLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       201 l~~l~~L~~L~ls~N~l~  218 (219)
                      +.++++|++|++++|+++
T Consensus       197 f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         197 FHGASGPVILDISRTRIH  214 (242)
T ss_dssp             TTTSCCCSEEECTTSCCC
T ss_pred             hcCCCCCCEEECCCCcCC
Confidence            455555555555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.1e-08  Score=81.45  Aligned_cols=89  Identities=27%  Similarity=0.378  Sum_probs=67.2

Q ss_pred             cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCC-CCCCCccccCCcccc
Q 040237           95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGN-GYSGGFLELGKTSLT  173 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N-~l~g~~~~~~~~~~p  173 (219)
                      ......|++|+++++.+....+...+..+++|++|+++++.+++..+..+.++++|+.|+++++ .++.       ..+.
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd-------~~l~  114 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE-------FALQ  114 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-------HHHH
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccc-------cccc
Confidence            3345689999999998774324556788999999999999998878888999999999999996 4431       1233


Q ss_pred             HHHhcCCCCCEEeccCc
Q 040237          174 NLVQKLTNLETLNLGRV  190 (219)
Q Consensus       174 ~~l~~l~~L~~L~l~~N  190 (219)
                      .....+++|++|+++++
T Consensus       115 ~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2         115 TLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             HHHHHCTTCCEEECCCC
T ss_pred             hhhHHHHhccccccccc
Confidence            33456677777777764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.5e-08  Score=74.19  Aligned_cols=84  Identities=25%  Similarity=0.156  Sum_probs=63.1

Q ss_pred             hhhcCCCCCCEEEcccCCCCCC--CchhhhcCCCCcEEEccCCCCCCCccccCCccccH-HHhcCCCCCEEeccCccCCC
Q 040237          118 PEIANLSRLSYLNLSDSFFTGQ--IPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN-LVQKLTNLETLNLGRVLIFN  194 (219)
Q Consensus       118 ~~l~~l~~L~~L~Ls~n~l~g~--lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~-~l~~l~~L~~L~l~~N~l~~  194 (219)
                      .....+++|++|++++|+++..  ++..+..+++|+.|++++|.++.         +++ ......+|+.+++++|.+..
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~---------l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS---------ERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC---------GGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc---------chhhhhhhccccceeecCCCCcCc
Confidence            3445789999999999999842  34557789999999999999852         332 23344579999999999976


Q ss_pred             CCcC-------hhhcCCCCCCEee
Q 040237          195 TPIP-------HNLGNLSSLRFLS  211 (219)
Q Consensus       195 ~~~p-------~~l~~l~~L~~L~  211 (219)
                       ...       ..+..+|+|+.||
T Consensus       130 -~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         130 -TFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             -SSSSHHHHHHHHHTTSTTCCEET
T ss_pred             -CcccchhHHHHHHHHCCCCCEEC
Confidence             433       2356789999887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.35  E-value=1.4e-07  Score=76.64  Aligned_cols=120  Identities=23%  Similarity=0.227  Sum_probs=82.8

Q ss_pred             cccCCCCCEeecCCCCCCCCC----CchhhcCCCCCCEEEcccCCCCCC----CchhhhcCCCCcEEEccCCCCCCCccc
Q 040237           95 AFSILSILSGNLAGNDFRYPE----IPPEIANLSRLSYLNLSDSFFTGQ----IPSEILELSNLVSLDLSGNGYSGGFLE  166 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~----~p~~l~~l~~L~~L~Ls~n~l~g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~~  166 (219)
                      +.....++++++++|.+....    +...+...++|++|++++|.++..    +...+..+++|++|++++|.+++.   
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~---  258 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR---  258 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH---
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch---
Confidence            556788999999999876310    223466788999999999988632    344567889999999999988431   


Q ss_pred             cCCccccHHHhcC--CCCCEEeccCccCCCC---CcChhhc-CCCCCCEeeccccccc
Q 040237          167 LGKTSLTNLVQKL--TNLETLNLGRVLIFNT---PIPHNLG-NLSSLRFLSLQNCLVQ  218 (219)
Q Consensus       167 ~~~~~~p~~l~~l--~~L~~L~l~~N~l~~~---~~p~~l~-~l~~L~~L~ls~N~l~  218 (219)
                       +...+-..+...  ..|++|++++|+++..   .+...+. +.++|++|++++|+++
T Consensus       259 -g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         259 -GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             -HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             -hhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence             011233344433  5799999999988651   1233342 5778999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.25  E-value=2.7e-06  Score=67.98  Aligned_cols=101  Identities=18%  Similarity=0.145  Sum_probs=67.2

Q ss_pred             CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHh
Q 040237           98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQ  177 (219)
Q Consensus        98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~  177 (219)
                      .++|++|++++|+++  .+|+.   +.+|+.|++++|+++ .++. +  .+.|++|++++|.++         .+|. ++
T Consensus        57 ~~~L~~L~Ls~N~l~--~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n~l~---------~lp~-~~  117 (353)
T d1jl5a_          57 PPHLESLVASCNSLT--ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNNQLE---------KLPE-LQ  117 (353)
T ss_dssp             CTTCSEEECCSSCCS--SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSSCCS---------SCCC-CT
T ss_pred             CCCCCEEECCCCCCc--ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccccccccc---------cccc-hh
Confidence            357888899999888  47754   457888888888877 4442 1  145888888888874         3443 46


Q ss_pred             cCCCCCEEeccCccCCCC-----------------CcChhhcCCCCCCEeecccccc
Q 040237          178 KLTNLETLNLGRVLIFNT-----------------PIPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       178 ~l~~L~~L~l~~N~l~~~-----------------~~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      .+++|++|++++|.+...                 ..+..+..++.++.+++++|.+
T Consensus       118 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         118 NSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             TCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             hhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccc
Confidence            778888888888776541                 0112234556667777766654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.8e-07  Score=67.12  Aligned_cols=90  Identities=23%  Similarity=0.278  Sum_probs=64.8

Q ss_pred             cccCCCCCEeecCCCCCCCCC-CchhhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237           95 AFSILSILSGNLAGNDFRYPE-IPPEIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGYSGGFLELGKTSL  172 (219)
Q Consensus        95 l~~l~~L~~L~L~~n~l~~~~-~p~~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~  172 (219)
                      ...+++|++|++++|+++... ++..+..+++|+.|++++|.++ .+++ ......+|+.+++++|+++..+... ....
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~-~~y~  138 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQ-STYI  138 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSH-HHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccc-hhHH
Confidence            456899999999999998421 2345778999999999999999 5554 3445567999999999986432100 0012


Q ss_pred             cHHHhcCCCCCEEe
Q 040237          173 TNLVQKLTNLETLN  186 (219)
Q Consensus       173 p~~l~~l~~L~~L~  186 (219)
                      ...+..+++|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence            23467789999886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.21  E-value=2.8e-07  Score=74.74  Aligned_cols=117  Identities=17%  Similarity=0.168  Sum_probs=77.0

Q ss_pred             cCCCCCEeecCCCCCCCC---CCchhhcCCCCCCEEEcccCCCCCC-----CchhhhcCCCCcEEEccCCCCCCCccccC
Q 040237           97 SILSILSGNLAGNDFRYP---EIPPEIANLSRLSYLNLSDSFFTGQ-----IPSEILELSNLVSLDLSGNGYSGGFLELG  168 (219)
Q Consensus        97 ~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~g~-----lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~  168 (219)
                      ..+.|+.+++++|.+...   .+...+...+.+++|+++.|.+...     +...+..+++|+.|++++|.++..    +
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~----g  231 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL----G  231 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH----H
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccc----c
Confidence            345666777777666421   0223455678899999999887632     223356778899999999886320    0


Q ss_pred             CccccHHHhcCCCCCEEeccCccCCCCC----cChhhcC--CCCCCEeeccccccc
Q 040237          169 KTSLTNLVQKLTNLETLNLGRVLIFNTP----IPHNLGN--LSSLRFLSLQNCLVQ  218 (219)
Q Consensus       169 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~----~p~~l~~--l~~L~~L~ls~N~l~  218 (219)
                      ...+...+..+++|++|++++|.+++ .    +-..+..  .+.|++|++++|+++
T Consensus       232 ~~~L~~~l~~~~~L~~L~Ls~n~i~~-~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         232 SSALAIALKSWPNLRELGLNDCLLSA-RGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHHHHGGGCTTCCEEECTTCCCCH-HHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             cccccccccccccchhhhhhcCccCc-hhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            11245567788899999999998875 3    2223333  357999999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.4e-07  Score=75.14  Aligned_cols=90  Identities=18%  Similarity=0.033  Sum_probs=40.1

Q ss_pred             CCCCCEEEcccCCCCCC----Cchhhh-cCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCc
Q 040237          123 LSRLSYLNLSDSFFTGQ----IPSEIL-ELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPI  197 (219)
Q Consensus       123 l~~L~~L~Ls~n~l~g~----lp~~~~-~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~  197 (219)
                      .++|++|++++|.+++.    ++..+. ....|++|++++|.++..    +...+.+.+...++|++|++++|+++. .-
T Consensus       339 ~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~----~~~~l~~~l~~~~~L~~L~Ls~N~i~~-~g  413 (460)
T d1z7xw1         339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS----SCSSLAATLLANHSLRELDLSNNCLGD-AG  413 (460)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH----HHHHHHHHHHHCCCCCEEECCSSSCCH-HH
T ss_pred             ccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH----HHHHHHHHHhcCCCCCEEECCCCcCCH-HH
Confidence            34555566655555421    222222 234455666666555310    001233444455556666666665543 21


Q ss_pred             C----hhhc-CCCCCCEeecccccc
Q 040237          198 P----HNLG-NLSSLRFLSLQNCLV  217 (219)
Q Consensus       198 p----~~l~-~l~~L~~L~ls~N~l  217 (219)
                      .    ..+. +...|+.|++.+|.+
T Consensus       414 ~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         414 ILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             HHHHHHHHHhCCCccCEEECCCCCC
Confidence            1    1122 222455666655554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.98  E-value=4.6e-06  Score=60.73  Aligned_cols=117  Identities=9%  Similarity=-0.021  Sum_probs=81.5

Q ss_pred             ccCCCCCEeecCCC-CCCCCC---CchhhcCCCCCCEEEcccCCCCC----CCchhhhcCCCCcEEEccCCCCCCCcccc
Q 040237           96 FSILSILSGNLAGN-DFRYPE---IPPEIANLSRLSYLNLSDSFFTG----QIPSEILELSNLVSLDLSGNGYSGGFLEL  167 (219)
Q Consensus        96 ~~l~~L~~L~L~~n-~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~g----~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~  167 (219)
                      .+.++|++|+|+++ .+....   +-..+...+.|++|++++|.+..    .+...+...+.|+.|++++|.++..    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~----   87 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE----   87 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH----
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH----
Confidence            45688999999974 454211   22356678899999999999873    2334566778999999999988531    


Q ss_pred             CCccccHHHhcCCCCCEEeccCccCCCC------CcChhhcCCCCCCEeeccccc
Q 040237          168 GKTSLTNLVQKLTNLETLNLGRVLIFNT------PIPHNLGNLSSLRFLSLQNCL  216 (219)
Q Consensus       168 ~~~~~p~~l~~l~~L~~L~l~~N~l~~~------~~p~~l~~l~~L~~L~ls~N~  216 (219)
                      +...+-..+...++|++|++++|.+...      .+...+..-++|+.|+++.+.
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            0112344566778899999999876431      134455567889999988764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.56  E-value=2.6e-05  Score=56.56  Aligned_cols=93  Identities=12%  Similarity=0.120  Sum_probs=66.7

Q ss_pred             cCCCCCCEEEcccC-CCCCC----CchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCC
Q 040237          121 ANLSRLSYLNLSDS-FFTGQ----IPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNT  195 (219)
Q Consensus       121 ~~l~~L~~L~Ls~n-~l~g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~  195 (219)
                      .+.+.|++|+++++ .++..    +-..+...+.|+.|++++|.+...    +...+...+...+.|++|++++|.+++.
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~----~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDS----EARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHH----HHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchh----HHHHHhhhhhhcccccceeeehhhcchH
Confidence            35689999999974 45422    223456678899999999987421    1123456677789999999999998751


Q ss_pred             C---cChhhcCCCCCCEeecccccc
Q 040237          196 P---IPHNLGNLSSLRFLSLQNCLV  217 (219)
Q Consensus       196 ~---~p~~l~~l~~L~~L~ls~N~l  217 (219)
                      .   +-..+..-++|++|++++|.+
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCcC
Confidence            1   234566778999999998864

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.42  E-value=1.8e-05  Score=57.15  Aligned_cols=118  Identities=16%  Similarity=0.123  Sum_probs=80.5

Q ss_pred             cccCCCCCEeecCC-CCCCCCC---CchhhcCCCCCCEEEcccCCCCCC----CchhhhcCCCCcEEEccCCCCCCCccc
Q 040237           95 AFSILSILSGNLAG-NDFRYPE---IPPEIANLSRLSYLNLSDSFFTGQ----IPSEILELSNLVSLDLSGNGYSGGFLE  166 (219)
Q Consensus        95 l~~l~~L~~L~L~~-n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~~  166 (219)
                      ..+.+.|++|++++ +.++...   +-..+...++|++|++++|.++..    +-..+.....++.+++++|.++..   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~---   89 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS---   89 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH---
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch---
Confidence            45678999999997 4554221   223456789999999999988743    223456678999999999987421   


Q ss_pred             cCCccccHHHhcCCCCCEEecc--CccCCC---CCcChhhcCCCCCCEeeccccc
Q 040237          167 LGKTSLTNLVQKLTNLETLNLG--RVLIFN---TPIPHNLGNLSSLRFLSLQNCL  216 (219)
Q Consensus       167 ~~~~~~p~~l~~l~~L~~L~l~--~N~l~~---~~~p~~l~~l~~L~~L~ls~N~  216 (219)
                       +...+...+...++|+.+++.  +|.+..   ..+...+...+.|++|+++.++
T Consensus        90 -g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          90 -GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             -HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             -hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence             011244556777889876664  566643   1244556678899999998775

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.44  E-value=0.0006  Score=48.73  Aligned_cols=95  Identities=16%  Similarity=0.142  Sum_probs=65.1

Q ss_pred             hhcCCCCCCEEEccc-CCCCCC----CchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCC
Q 040237          119 EIANLSRLSYLNLSD-SFFTGQ----IPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIF  193 (219)
Q Consensus       119 ~l~~l~~L~~L~Ls~-n~l~g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~  193 (219)
                      ...+.+.|++|++++ +.++..    +-..+...++|+.|++++|.++..    +...+-..+...++++.+++++|.+.
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~----~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP----VAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH----HHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHH----HHHHHHHHHhhcccchhhhhcccccc
Confidence            345678999999997 456522    223455789999999999987421    11224455677899999999999886


Q ss_pred             CC---CcChhhcCCCCCCEeec--ccccc
Q 040237          194 NT---PIPHNLGNLSSLRFLSL--QNCLV  217 (219)
Q Consensus       194 ~~---~~p~~l~~l~~L~~L~l--s~N~l  217 (219)
                      ..   .+...+...++|+.+++  ++|++
T Consensus        88 ~~g~~~l~~~l~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          88 GSGILALVEALQSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred             chhHHHHHHHHHhCccccEEeeccCCCcC
Confidence            51   13355677788987555  55665